RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6341
(465 letters)
>d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow
(Bos taurus) [TaxId: 9913]}
Length = 258
Score = 106 bits (264), Expect = 1e-26
Identities = 108/190 (56%), Positives = 125/190 (65%), Gaps = 13/190 (6%)
Query: 2 KWILSLLREREIGIPPEQSLETAKAIKERYSYICPDIAKEFAKYDADPGKWMRNLFYSPT 61
+I LLR+RE+GIPPEQSLETAKA+KERYSY+CPD+ KEF KYD D KW++ T
Sbjct: 42 YFIQQLLRDREVGIPPEQSLETAKAVKERYSYVCPDLVKEFNKYDTDGSKWIK----QYT 97
Query: 62 SWKKSPSDRPSIPFFTQNFQFKSFLF--SFSNPDFTTPISEIVDTVIQNCPIDVRRPLYH 119
SI + F F F+NPDFT PISE+VD VIQNCPIDVRRPLY
Sbjct: 98 GINAISKKEFSIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCPIDVRRPLYK 157
Query: 120 NIVLSGGSTMFRDFGRRLQRDIKRVVDARLKLSETLSGGYIKVTEVSRKFQGRRLHWYGH 179
NIVLSGGSTMFRDFGRRLQRD+KR VDARLKLSE LSGG +K + + H
Sbjct: 158 NIVLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEELSGGRLKPKPI-------DVQVITH 210
Query: 180 VERRDESYIG 189
+R + G
Sbjct: 211 HMQRYAVWFG 220
Score = 68.6 bits (167), Expect = 9e-14
Identities = 50/85 (58%), Positives = 56/85 (65%), Gaps = 25/85 (29%)
Query: 252 RTLTGIVVDSGDGVTHVIPV-------------------------SLLREREIGIPPEQS 286
RTLTG V+DSGDGVTHVIPV LLR+RE+GIPPEQS
Sbjct: 1 RTLTGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLRDREVGIPPEQS 60
Query: 287 LETAKAIKERYSYICPDIAKEFAKY 311
LETAKA+KERYSY+CPD+ KEF KY
Sbjct: 61 LETAKAVKERYSYVCPDLVKEFNKY 85
>d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow
(Bos taurus) [TaxId: 9913]}
Length = 190
Score = 81.3 bits (200), Expect = 2e-18
Identities = 37/161 (22%), Positives = 61/161 (37%), Gaps = 9/161 (5%)
Query: 2 KWILSLLREREIGIPPEQSLETAKAIKERYSYICPDIAKEFAKYDADPGKWMRNLFYSPT 61
++++ LL R ET + IKE+ Y+ +I +E
Sbjct: 38 RYLIKLLLLRGYAFNHSADFETVRMIKEKLCYVGYNIEQEQKLALETTVLVESYTLPDGR 97
Query: 62 SWKKSPSDRPSIPFFTQNFQFKSFLFSFSNPDFTTPISEIVDTVIQNCPIDVRRPLYHNI 121
K F F+ L + +E++ IQ ID R Y +I
Sbjct: 98 IIKVGGER-----FEAPEALFQPHLINVEGVGV----AELLFNTIQAADIDTRSEFYKHI 148
Query: 122 VLSGGSTMFRDFGRRLQRDIKRVVDARLKLSETLSGGYIKV 162
VLSGGSTM+ RL+R++K++ R+ + K+
Sbjct: 149 VLSGGSTMYPGLPSRLERELKQLYLERVLKGDVEKLSKFKI 189
Score = 48.6 bits (115), Expect = 2e-07
Identities = 27/101 (26%), Positives = 38/101 (37%), Gaps = 25/101 (24%)
Query: 256 GIVVDSGDGVTHVIPV-------------------------SLLREREIGIPPEQSLETA 290
G+VVDSGDGVTH+ PV LL R ET
Sbjct: 1 GVVVDSGDGVTHICPVYEGFSLPHLTRRLDIAGRDITRYLIKLLLLRGYAFNHSADFETV 60
Query: 291 KAIKERYSYICPDIAKEFAKYVRNKVWKQPKLSRNDTLIFV 331
+ IKE+ Y+ +I +E + V + + +I V
Sbjct: 61 RMIKEKLCYVGYNIEQEQKLALETTVLVESYTLPDGRIIKV 101
>d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]}
Length = 225
Score = 70.5 bits (172), Expect = 1e-14
Identities = 41/153 (26%), Positives = 65/153 (42%), Gaps = 15/153 (9%)
Query: 2 KWILSLLREREIGIPPEQSLETAKAIKERYSYICPDIAKEFAKYDADPGKWMRNLFYSPT 61
+++ +L ER E + IKE+ Y+ D E A S +
Sbjct: 41 DYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAA------------SSS 88
Query: 62 SWKKSPS--DRPSIPFFTQNFQFKSFLFSFSNPDFTTP-ISEIVDTVIQNCPIDVRRPLY 118
S +KS D I + F+ LF S + I E I C ID+R+ LY
Sbjct: 89 SLEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLY 148
Query: 119 HNIVLSGGSTMFRDFGRRLQRDIKRVVDARLKL 151
N V+SGG+TM+ R+Q++I + + +K+
Sbjct: 149 ANNVMSGGTTMYPGIADRMQKEITALAPSTMKI 181
Score = 59.3 bits (143), Expect = 1e-10
Identities = 35/158 (22%), Positives = 55/158 (34%), Gaps = 29/158 (18%)
Query: 252 RTLTGIVVDSGDGVTHVIPV-------------------------SLLREREIGIPPEQS 286
RT TGIV+DSGDGVTH +P+ +L ER
Sbjct: 1 RT-TGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAE 59
Query: 287 LETAKAIKERYSYICPDIAKEFAKYVRNKVWKQPKLSRNDTLIFVPILLRSLPKQSLETA 346
E + IKE+ Y+ D E A + ++ + +I + P+ + +
Sbjct: 60 REIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPS 119
Query: 347 KAIKERYSYICPDIAKEFAKYDADPGKWMRNSYSIVLT 384
E I K D D K + + V++
Sbjct: 120 FIGMESAG-IHETTYNSIMKCDIDIRKDLYA--NNVMS 154
>d1k8ka1 c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 158
Score = 55.8 bits (134), Expect = 5e-10
Identities = 31/46 (67%), Positives = 33/46 (71%), Gaps = 5/46 (10%)
Query: 206 PKKRWKDCVNQDLEIMFESFNVPGLYIAVQAVLALAASWKSRPIEE 251
P+ R EIMFESFNVPGLYIAVQAVLALAASW SR + E
Sbjct: 118 PENREYTA-----EIMFESFNVPGLYIAVQAVLALAASWTSRQVGE 158
>d2fxua1 c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId: 9913]}
Length = 140
Score = 47.8 bits (113), Expect = 2e-07
Identities = 17/25 (68%), Positives = 23/25 (92%)
Query: 219 EIMFESFNVPGLYIAVQAVLALAAS 243
+IMFE+FNVP +Y+A+QAVL+L AS
Sbjct: 115 QIMFETFNVPAMYVAIQAVLSLYAS 139
>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine
reductase) {Nematode (Caenorhabditis elegans) [TaxId:
6239]}
Length = 235
Score = 32.5 bits (73), Expect = 0.076
Identities = 7/38 (18%), Positives = 16/38 (42%), Gaps = 7/38 (18%)
Query: 235 QAVLALAASWKSRPIEERTLTG--IVVDSGDGVTHVIP 270
+ +L SRP +G + + + +G + + P
Sbjct: 202 EHLLKWTTETSSRPS-----SGALLKITTENGTSTITP 234
>d2gyck1 d.41.4.2 (K:3-133) Ribosomal protein L16p {Escherichia coli
[TaxId: 562]}
Length = 131
Score = 30.9 bits (70), Expect = 0.12
Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 6/92 (6%)
Query: 154 TLSGGYIKVT--EVSRKFQGRRLHWYGHVERRDESYIGKRVERMEVRGRKGRGRPKKRWK 211
+ G + E +R+ R + G + R + + VR KG+G + W
Sbjct: 33 AVGRGRLTARQIEAARRAMTRAVKRQGKIWIRVFPDKPITEKPLAVRMGKGKGNVEY-WV 91
Query: 212 DCVNQDLEIMFESFNVPGLYIAVQAVLALAAS 243
+ ++++E VP +A +A LAA+
Sbjct: 92 ALIQPG-KVLYEMDGVP-EELAREA-FKLAAA 120
>d1p1la_ d.58.5.2 (A:) Cut A1 {Archaeon Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 102
Score = 27.5 bits (61), Expect = 1.1
Identities = 8/49 (16%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 331 VPILLRSLPKQSLETAKAIKERYSYICPDI-AKEFAKYDADPGKWMRNS 378
+++++ ++ E +K +SY P I A + + W+ +
Sbjct: 52 FAMIVKTRSEKFAEVRDEVKAMHSYTTPCICAIPIERGLKEFLDWIDET 100
>d1nzaa_ d.58.5.2 (A:) Cut A1 {Thermus thermophilus [TaxId: 274]}
Length = 103
Score = 27.4 bits (61), Expect = 1.3
Identities = 9/49 (18%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 331 VPILLRSLPKQSLETAKAIKERYSYICPDI-AKEFAKYDADPGKWMRNS 378
+ +L+++ + + +K + Y P+I A A+ + + W+R +
Sbjct: 53 LLLLVKTTTHAFPKLKERVKALHPYTVPEIVALPIAEGNREYLDWLREN 101
>d1tf5a1 a.162.1.1 (A:227-348) Pre-protein crosslinking domain of
SecA {Bacillus subtilis [TaxId: 1423]}
Length = 122
Score = 27.6 bits (61), Expect = 1.3
Identities = 17/99 (17%), Positives = 38/99 (38%), Gaps = 12/99 (12%)
Query: 133 FGRRLQRDIKRVVDARLKLSETLSGGYIKVTE---VSRKFQGRRLHWYGHVE-------- 181
F R L+ + D + K + G K + + F + + H+
Sbjct: 14 FVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVA 73
Query: 182 -RRDESYIGKRVERMEVRGRKGRGRPKKRWKDCVNQDLE 219
++D Y+ + + + V GR +R+ + ++Q +E
Sbjct: 74 MQKDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIE 112
>d2af7a1 a.152.1.2 (A:1-119) Gamma-carboxymuconolactone
decarboxylase, CMD {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 119
Score = 27.1 bits (60), Expect = 2.1
Identities = 10/48 (20%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 288 ETAKAIKERYSYICPDIAKEFAKYVRNKVWKQPKLSRNDT-LIFVPIL 334
++ AI++ + PD+A+ A++ V+ + L L+ + L
Sbjct: 17 KSYTAIRDELEDVAPDLARFVAEFAYGDVYSRGVLDLKTRELLTLAAL 64
>d1eyqa_ d.36.1.1 (A:) Chalcone isomerase {Alfalfa (Medicago sativa)
[TaxId: 3879]}
Length = 212
Score = 28.0 bits (62), Expect = 2.3
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 219 EIMFESFNVPGLYIAVQAVLALAASWKSRPIEE 251
E F F G+Y+ AV +LAA WK + EE
Sbjct: 38 EGNFIKFTAIGVYLEDIAVASLAAKWKGKSSEE 70
>d2zdra2 c.1.10.6 (A:2-281) Capsule biosynthesis protein SiaC,
N-terminal domain {Neisseria meningitidis [TaxId: 487]}
Length = 280
Score = 28.0 bits (61), Expect = 2.5
Identities = 13/74 (17%), Positives = 24/74 (32%), Gaps = 1/74 (1%)
Query: 12 EIGIPPEQSLETAKAIKERYSYICPDIAKEFAKYDADPGKWMRNLFYSPTSWKKSPSDRP 71
EIGI E SL+TA + + ++ K + + P + S +
Sbjct: 24 EIGINHEGSLKTAFEMVDAAYNAGAEVVK-HQTHIVEDEMSDEAKQVIPGNADVSIYEIM 82
Query: 72 SIPFFTQNFQFKSF 85
+ + K
Sbjct: 83 ERCALNEEDEIKLK 96
>d2zfha1 d.58.5.2 (A:63-169) Mammalian CutA-like protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 107
Score = 26.7 bits (59), Expect = 2.5
Identities = 5/49 (10%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 331 VPILLRSLPKQSLETAKAIKERYSYICPDI-AKEFAKYDADPGKWMRNS 378
V +++++ ++ + Y ++ A + + +W+R
Sbjct: 57 VLMMIKTQSSLVPALTDFVRSVHPYEVAEVIALPVEQGNFPYLQWVRQV 105
>d1l8na2 d.92.2.2 (A:4-142) alpha-D-glucuronidase, N-terminal domain
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 139
Score = 27.2 bits (60), Expect = 2.7
Identities = 7/47 (14%), Positives = 21/47 (44%)
Query: 112 DVRRPLYHNIVLSGGSTMFRDFGRRLQRDIKRVVDARLKLSETLSGG 158
R + IV S +F+ LQ+ ++ +++ ++ + ++
Sbjct: 14 QYSRLRFEEIVAKRTSPIFQAAVEELQKGLRSMMEIEPQVVQEVNET 60
>d1r5pa_ c.47.1.15 (A:) Circadian oscillation regulator KaiB
{Cyanobacterium (Nostoc sp.) pcc 7120 [TaxId: 1180]}
Length = 90
Score = 26.2 bits (58), Expect = 3.2
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 316 VWKQPKLSRNDTLIFVPILLRSLP 339
V K P+L+ D ++ P L + LP
Sbjct: 41 VLKNPQLAEEDKILATPTLSKILP 64
>d1ukua_ d.58.5.2 (A:) Cut A1 {Archaeon Pyrococcus horikoshii
[TaxId: 53953]}
Length = 102
Score = 25.9 bits (57), Expect = 4.1
Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 331 VPILLRSLPKQSLETAKAIKERYSYICPDI-AKEFAKYDADPGKWMRNS 378
V +L++ E + IKE + Y P I + + D KW+
Sbjct: 51 VGAILKTREDLWEELKERIKELHPYDVPAIIRIDVDDVNEDYLKWLIEE 99
>d1kr4a_ d.58.5.2 (A:) Hypothetical protein TM1056 {Thermotoga
maritima [TaxId: 2336]}
Length = 110
Score = 25.5 bits (56), Expect = 6.9
Identities = 7/49 (14%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 331 VPILLRSLPKQSLETAKAIKERYSYICPDI-AKEFAKYDADPGKWMRNS 378
+ ++ ++ E + +++ + Y P I + + W+R S
Sbjct: 58 WAAIFKTTEEKEKELYEELRKLHPYETPAIFTLKVENILTEYMNWLRES 106
>d1naqa_ d.58.5.2 (A:) Cut A1 {Escherichia coli [TaxId: 562]}
Length = 106
Score = 25.1 bits (55), Expect = 8.5
Identities = 9/49 (18%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 331 VPILLRSLPKQSLETAKAIKERYSYICPDI-AKEFAKYDADPGKWMRNS 378
V ++L++ + +K + Y P++ D D W+ S
Sbjct: 56 VQMILKTTVSHQQALLECLKSHHPYQTPELLVLPVTHGDTDYLSWLNAS 104
>d1v2ba_ d.107.1.2 (A:) Oxygen-evolving enhancer protein PsbP
{Common tobacco (Nicotiana tabacum) [TaxId: 4097]}
Length = 171
Score = 25.8 bits (56), Expect = 8.8
Identities = 16/106 (15%), Positives = 33/106 (31%), Gaps = 7/106 (6%)
Query: 129 MFRDFGRRLQRDIKRVVDARLKLSETLSGGYIKVTEVS-RKFQGRRLHWYGHVERRDESY 187
L R E+ + V E S + G++ ++ + R +
Sbjct: 65 FLSQVDYLLGRQAYSGKTDSEGGFESDAVAIANVLETSTAEVGGKQYYYLSILTRTADGN 124
Query: 188 IGKRVERMEVRGRKGR------GRPKKRWKDCVNQDLEIMFESFNV 227
G + + + G+ KRW + +E SF++
Sbjct: 125 EGGKHQLVTATVNDGKLYICKAQAGDKRWFKGAKKFVENTATSFSL 170
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.137 0.426
Gapped
Lambda K H
0.267 0.0652 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,891,057
Number of extensions: 94825
Number of successful extensions: 304
Number of sequences better than 10.0: 1
Number of HSP's gapped: 301
Number of HSP's successfully gapped: 30
Length of query: 465
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 377
Effective length of database: 1,199,356
Effective search space: 452157212
Effective search space used: 452157212
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.1 bits)