BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6344
(142 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2NZT|A Chain A, Crystal Structure Of Human Hexokinase Ii
pdb|2NZT|B Chain B, Crystal Structure Of Human Hexokinase Ii
Length = 902
Score = 148 bits (373), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 72/140 (51%), Positives = 97/140 (69%), Gaps = 3/140 (2%)
Query: 6 KIREHCKDLVLSDEQLREVMSKLLLAINKGLDKNTNKEAVVKCFPTYVQDLPNGKEKGKF 65
K+ ++ + LSDE L E+ + + KGL T+ A VK PT+V+ P+G E G+F
Sbjct: 7 KVDQYLYHMRLSDETLLEISKRFRKEMEKGLGATTHPTAAVKMLPTFVRSTPDGTEHGEF 66
Query: 66 LALDLGGTNFRVLIIYLEENHFK---MESKVYSIPQDIMTGSGTQLFDHIAECLADFMRD 122
LALDLGGTNFRVL + + +N + ME+++Y+IP+DIM GSGTQLFDHIAECLA+FM
Sbjct: 67 LALDLGGTNFRVLWVKVTDNGLQKVEMENQIYAIPEDIMRGSGTQLFDHIAECLANFMDK 126
Query: 123 NDVASERLPLGFTFSFPLTQ 142
+ ++LPLGFTFSFP Q
Sbjct: 127 LQIKDKKLPLGFTFSFPCHQ 146
Score = 138 bits (347), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 70/143 (48%), Positives = 94/143 (65%), Gaps = 6/143 (4%)
Query: 3 VRGKIREHCKDLVLSDEQLREVMSKLLLAINKGLDKNTNKEAVVKCFPTYVQDLPNGKEK 62
R K EH L LS +QL EV ++ + + +GL K T+ A VK PTYV P+G EK
Sbjct: 455 ARQKTLEH---LQLSHDQLLEVKRRMKVEMERGLSKETHASAPVKMLPTYVCATPDGTEK 511
Query: 63 GKFLALDLGGTNFRVLIIYLEENHF---KMESKVYSIPQDIMTGSGTQLFDHIAECLADF 119
G FLALDLGGTNFRVL++ + + +M +K+Y+IPQ++M G+G +LFDHI +C+ADF
Sbjct: 512 GDFLALDLGGTNFRVLLVRVRNGKWGGVEMHNKIYAIPQEVMHGTGDELFDHIVQCIADF 571
Query: 120 MRDNDVASERLPLGFTFSFPLTQ 142
+ + LPLGFTFSFP Q
Sbjct: 572 LEYMGMKGVSLPLGFTFSFPCQQ 594
>pdb|1DGK|N Chain N, Mutant Monomer Of Recombinant Human Hexokinase Type I With
Glucose And Adp In The Active Site
Length = 917
Score = 139 bits (349), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 67/142 (47%), Positives = 97/142 (68%), Gaps = 7/142 (4%)
Query: 6 KIREHCKDLVLSDEQLREVMSKLLLAINKGLDKNTNKEAVVKCFPTYVQDLPNGKEKGKF 65
KI ++ + LSDE L ++M++ + GL ++ N A VK PT+V+ +P+G EKG F
Sbjct: 21 KIDKYLYAMRLSDETLIDIMTRFRKEMKNGLSRDFNPTATVKMLPTFVRSIPDGSEKGDF 80
Query: 66 LALDLGGTNFRVLIIYLEENHFK-----MESKVYSIPQDIMTGSGTQLFDHIAECLADFM 120
+ALDLGG++FR+L + + NH K MES+VY P++I+ GSG+QLFDH+AECL DFM
Sbjct: 81 IALDLGGSSFRILRVQV--NHEKNQNVHMESEVYDTPENIVHGSGSQLFDHVAECLGDFM 138
Query: 121 RDNDVASERLPLGFTFSFPLTQ 142
+ ++LP+GFTFSFP Q
Sbjct: 139 EKRKIKDKKLPVGFTFSFPCQQ 160
Score = 125 bits (313), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 61/140 (43%), Positives = 89/140 (63%), Gaps = 3/140 (2%)
Query: 6 KIREHCKDLVLSDEQLREVMSKLLLAINKGLDKNTNKEAVVKCFPTYVQDLPNGKEKGKF 65
+I E L+ + L EV ++ + GL K T+ AVVK P++V+ P+G E G F
Sbjct: 469 QIEETLAHFHLTKDMLLEVKKRMRAEMELGLRKQTHNNAVVKMLPSFVRRTPDGTENGDF 528
Query: 66 LALDLGGTNFRVLIIYL---EENHFKMESKVYSIPQDIMTGSGTQLFDHIAECLADFMRD 122
LALDLGG NFRVL++ + ++ +M +K+Y+IP +IM G+G +LFDHI C++DF+
Sbjct: 529 LALDLGGANFRVLLVKIRSGKKRTVEMHNKIYAIPIEIMQGTGEELFDHIVSCISDFLDY 588
Query: 123 NDVASERLPLGFTFSFPLTQ 142
+ R+PLGFTFSFP Q
Sbjct: 589 MGIKGPRMPLGFTFSFPCQQ 608
>pdb|1CZA|N Chain N, Mutant Monomer Of Recombinant Human Hexokinase Type I
Complexed With Glucose, Glucose-6-Phosphate, And Adp
Length = 917
Score = 139 bits (349), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 67/142 (47%), Positives = 97/142 (68%), Gaps = 7/142 (4%)
Query: 6 KIREHCKDLVLSDEQLREVMSKLLLAINKGLDKNTNKEAVVKCFPTYVQDLPNGKEKGKF 65
KI ++ + LSDE L ++M++ + GL ++ N A VK PT+V+ +P+G EKG F
Sbjct: 21 KIDKYLYAMRLSDETLIDIMTRFRKEMKNGLSRDFNPTATVKMLPTFVRSIPDGSEKGDF 80
Query: 66 LALDLGGTNFRVLIIYLEENHFK-----MESKVYSIPQDIMTGSGTQLFDHIAECLADFM 120
+ALDLGG++FR+L + + NH K MES+VY P++I+ GSG+QLFDH+AECL DFM
Sbjct: 81 IALDLGGSSFRILRVQV--NHEKNQNVHMESEVYDTPENIVHGSGSQLFDHVAECLGDFM 138
Query: 121 RDNDVASERLPLGFTFSFPLTQ 142
+ ++LP+GFTFSFP Q
Sbjct: 139 EKRKIKDKKLPVGFTFSFPCQQ 160
Score = 127 bits (318), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 90/140 (64%), Gaps = 3/140 (2%)
Query: 6 KIREHCKDLVLSDEQLREVMSKLLLAINKGLDKNTNKEAVVKCFPTYVQDLPNGKEKGKF 65
+I E L+ + L EV ++ + GL K T+ AVVK P++V+ P+G E G F
Sbjct: 469 QIEETLAHFHLTKDMLLEVKKRMRAEMELGLRKQTHNNAVVKMLPSFVRRTPDGTENGDF 528
Query: 66 LALDLGGTNFRVLIIYL---EENHFKMESKVYSIPQDIMTGSGTQLFDHIAECLADFMRD 122
LALDLGGTNFRVL++ + ++ +M +K+Y+IP +IM G+G +LFDHI C++DF+
Sbjct: 529 LALDLGGTNFRVLLVKIRSGKKRTVEMHNKIYAIPIEIMQGTGEELFDHIVSCISDFLDY 588
Query: 123 NDVASERLPLGFTFSFPLTQ 142
+ R+PLGFTFSFP Q
Sbjct: 589 MGIKGPRMPLGFTFSFPCQQ 608
>pdb|1HKB|A Chain A, Crystal Structure Of Recombinant Human Brain Hexokinase
Type I Complexed With Glucose And Glucose-6-Phosphate
pdb|1HKB|B Chain B, Crystal Structure Of Recombinant Human Brain Hexokinase
Type I Complexed With Glucose And Glucose-6-Phosphate
Length = 917
Score = 139 bits (349), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 67/142 (47%), Positives = 97/142 (68%), Gaps = 7/142 (4%)
Query: 6 KIREHCKDLVLSDEQLREVMSKLLLAINKGLDKNTNKEAVVKCFPTYVQDLPNGKEKGKF 65
KI ++ + LSDE L ++M++ + GL ++ N A VK PT+V+ +P+G EKG F
Sbjct: 21 KIDKYLYAMRLSDETLIDIMTRFRKEMKNGLSRDFNPTATVKMLPTFVRSIPDGSEKGDF 80
Query: 66 LALDLGGTNFRVLIIYLEENHFK-----MESKVYSIPQDIMTGSGTQLFDHIAECLADFM 120
+ALDLGG++FR+L + + NH K MES+VY P++I+ GSG+QLFDH+AECL DFM
Sbjct: 81 IALDLGGSSFRILRVQV--NHEKNQNVHMESEVYDTPENIVHGSGSQLFDHVAECLGDFM 138
Query: 121 RDNDVASERLPLGFTFSFPLTQ 142
+ ++LP+GFTFSFP Q
Sbjct: 139 EKRKIKDKKLPVGFTFSFPCQQ 160
Score = 127 bits (318), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 90/140 (64%), Gaps = 3/140 (2%)
Query: 6 KIREHCKDLVLSDEQLREVMSKLLLAINKGLDKNTNKEAVVKCFPTYVQDLPNGKEKGKF 65
+I E L+ + L EV ++ + GL K T+ AVVK P++V+ P+G E G F
Sbjct: 469 QIEETLAHFHLTKDMLLEVKKRMRAEMELGLRKQTHNNAVVKMLPSFVRRTPDGTENGDF 528
Query: 66 LALDLGGTNFRVLIIYL---EENHFKMESKVYSIPQDIMTGSGTQLFDHIAECLADFMRD 122
LALDLGGTNFRVL++ + ++ +M +K+Y+IP +IM G+G +LFDHI C++DF+
Sbjct: 529 LALDLGGTNFRVLLVKIRSGKKRTVEMHNKIYAIPIEIMQGTGEELFDHIVSCISDFLDY 588
Query: 123 NDVASERLPLGFTFSFPLTQ 142
+ R+PLGFTFSFP Q
Sbjct: 589 MGIKGPRMPLGFTFSFPCQQ 608
>pdb|1HKC|A Chain A, Recombinant Human Hexokinase Type I Complexed With Glucose
And Phosphate
pdb|1QHA|A Chain A, Human Hexokinase Type I Complexed With Atp Analogue
Amp-Pnp
pdb|1QHA|B Chain B, Human Hexokinase Type I Complexed With Atp Analogue
Amp-Pnp
Length = 917
Score = 139 bits (349), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 67/142 (47%), Positives = 97/142 (68%), Gaps = 7/142 (4%)
Query: 6 KIREHCKDLVLSDEQLREVMSKLLLAINKGLDKNTNKEAVVKCFPTYVQDLPNGKEKGKF 65
KI ++ + LSDE L ++M++ + GL ++ N A VK PT+V+ +P+G EKG F
Sbjct: 21 KIDKYLYAMRLSDETLIDIMTRFRKEMKNGLSRDFNPTATVKMLPTFVRSIPDGSEKGDF 80
Query: 66 LALDLGGTNFRVLIIYLEENHFK-----MESKVYSIPQDIMTGSGTQLFDHIAECLADFM 120
+ALDLGG++FR+L + + NH K MES+VY P++I+ GSG+QLFDH+AECL DFM
Sbjct: 81 IALDLGGSSFRILRVQV--NHEKNQNVHMESEVYDTPENIVHGSGSQLFDHVAECLGDFM 138
Query: 121 RDNDVASERLPLGFTFSFPLTQ 142
+ ++LP+GFTFSFP Q
Sbjct: 139 EKRKIKDKKLPVGFTFSFPCQQ 160
Score = 127 bits (318), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 90/140 (64%), Gaps = 3/140 (2%)
Query: 6 KIREHCKDLVLSDEQLREVMSKLLLAINKGLDKNTNKEAVVKCFPTYVQDLPNGKEKGKF 65
+I E L+ + L EV ++ + GL K T+ AVVK P++V+ P+G E G F
Sbjct: 469 QIEETLAHFHLTKDMLLEVKKRMRAEMELGLRKQTHNNAVVKMLPSFVRRTPDGTENGDF 528
Query: 66 LALDLGGTNFRVLIIYL---EENHFKMESKVYSIPQDIMTGSGTQLFDHIAECLADFMRD 122
LALDLGGTNFRVL++ + ++ +M +K+Y+IP +IM G+G +LFDHI C++DF+
Sbjct: 529 LALDLGGTNFRVLLVKIRSGKKRTVEMHNKIYAIPIEIMQGTGEELFDHIVSCISDFLDY 588
Query: 123 NDVASERLPLGFTFSFPLTQ 142
+ R+PLGFTFSFP Q
Sbjct: 589 MGIKGPRMPLGFTFSFPCQQ 608
>pdb|1BG3|A Chain A, Rat Brain Hexokinase Type I Complex With Glucose And
Inhibitor Glucose-6-Phosphate
pdb|1BG3|B Chain B, Rat Brain Hexokinase Type I Complex With Glucose And
Inhibitor Glucose-6-Phosphate
Length = 918
Score = 132 bits (333), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 65/140 (46%), Positives = 91/140 (65%), Gaps = 3/140 (2%)
Query: 6 KIREHCKDLVLSDEQLREVMSKLLLAINKGLDKNTNKEAVVKCFPTYVQDLPNGKEKGKF 65
+I E LS + L EV +L + GL K TN +A VK P++V+ +P+G E G F
Sbjct: 469 QIEETLAHFRLSKQTLMEVKKRLRTEMEMGLRKETNSKATVKMLPSFVRSIPDGTEHGDF 528
Query: 66 LALDLGGTNFRVLIIYL---EENHFKMESKVYSIPQDIMTGSGTQLFDHIAECLADFMRD 122
LALDLGGTNFRVL++ + ++ +M +K+YSIP +IM G+G +LFDHI C++DF+
Sbjct: 529 LALDLGGTNFRVLLVKIRSGKKRTVEMHNKIYSIPLEIMQGTGDELFDHIVSCISDFLDY 588
Query: 123 NDVASERLPLGFTFSFPLTQ 142
+ R+PLGFTFSFP Q
Sbjct: 589 MGIKGPRMPLGFTFSFPCHQ 608
Score = 131 bits (330), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 65/142 (45%), Positives = 97/142 (68%), Gaps = 7/142 (4%)
Query: 6 KIREHCKDLVLSDEQLREVMSKLLLAINKGLDKNTNKEAVVKCFPTYVQDLPNGKEKGKF 65
KI ++ + LSDE L +++++ + GL ++ N A VK PT+V+ +P+G EKG F
Sbjct: 21 KIDKYLYAMRLSDEILIDILTRFKKEMKNGLSRDYNPTASVKMLPTFVRSIPDGSEKGDF 80
Query: 66 LALDLGGTNFRVLIIYLEENHFK-----MESKVYSIPQDIMTGSGTQLFDHIAECLADFM 120
+ALDLGG++FR+L + + NH K MES++Y P++I+ GSGTQLFDH+A+CL DFM
Sbjct: 81 IALDLGGSSFRILRVQV--NHEKNQNVSMESEIYDTPENIVHGSGTQLFDHVADCLGDFM 138
Query: 121 RDNDVASERLPLGFTFSFPLTQ 142
+ ++LP+GFTFSFP Q
Sbjct: 139 EKKKIKDKKLPVGFTFSFPCRQ 160
>pdb|4DCH|A Chain A, Insights Into Glucokinase Activation Mechanism:
Observation Of Multiple Distinct Protein Conformations
Length = 473
Score = 131 bits (329), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 98/140 (70%), Gaps = 5/140 (3%)
Query: 6 KIREHCKDLVLSDEQLREVMSKLLLAINKGLDKNTNKEAVVKCFPTYVQDLPNGKEKGKF 65
K+ + + L +E L++VM ++ +++GL T++EA VK PTYV+ P G E G F
Sbjct: 15 KVEQILAEFQLQEEDLKKVMRRMQKEMDRGLRLETHEEASVKMLPTYVRSTPEGSEVGDF 74
Query: 66 LALDLGGTNFRVLIIYL---EENHFKMESK--VYSIPQDIMTGSGTQLFDHIAECLADFM 120
L+LDLGGTNFRV+++ + EE + +++K +YSIP+D MTG+ LFD+I+EC++DF+
Sbjct: 75 LSLDLGGTNFRVMLVKVGEGEEGQWSVKTKHQMYSIPEDAMTGTAEMLFDYISECISDFL 134
Query: 121 RDNDVASERLPLGFTFSFPL 140
+ + ++LPLGFTFSFP+
Sbjct: 135 DKHQMKHKKLPLGFTFSFPV 154
>pdb|3F9M|A Chain A, Human Pancreatic Glucokinase In Complex With Glucose And
Activator Showing A Mobile Flap
pdb|3FGU|A Chain A, Catalytic Complex Of Human Glucokinase
pdb|3ID8|A Chain A, Ternary Complex Of Human Pancreatic Glucokinase
Crystallized With Activator, Glucose And Amp-Pnp
pdb|3IDH|A Chain A, Human Pancreatic Glucokinase In Complex With Glucose
pdb|3VEV|A Chain A, Glucokinase In Complex With An Activator And Glucose
pdb|3VF6|A Chain A, Glucokinase In Complex With Glucose And Activator
Length = 470
Score = 131 bits (329), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 98/140 (70%), Gaps = 5/140 (3%)
Query: 6 KIREHCKDLVLSDEQLREVMSKLLLAINKGLDKNTNKEAVVKCFPTYVQDLPNGKEKGKF 65
K+ + + L +E L++VM ++ +++GL T++EA VK PTYV+ P G E G F
Sbjct: 20 KVEQILAEFQLQEEDLKKVMRRMQKEMDRGLRLETHEEASVKMLPTYVRSTPEGSEVGDF 79
Query: 66 LALDLGGTNFRVLIIYL---EENHFKMESK--VYSIPQDIMTGSGTQLFDHIAECLADFM 120
L+LDLGGTNFRV+++ + EE + +++K +YSIP+D MTG+ LFD+I+EC++DF+
Sbjct: 80 LSLDLGGTNFRVMLVKVGEGEEGQWSVKTKHQMYSIPEDAMTGTAEMLFDYISECISDFL 139
Query: 121 RDNDVASERLPLGFTFSFPL 140
+ + ++LPLGFTFSFP+
Sbjct: 140 DKHQMKHKKLPLGFTFSFPV 159
>pdb|3S41|A Chain A, Glucokinase In Complex With Activator And Glucose
pdb|4DHY|A Chain A, Crystal Structure Of Human Glucokinase In Complex With
Glucose And Activator
Length = 469
Score = 131 bits (329), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 98/140 (70%), Gaps = 5/140 (3%)
Query: 6 KIREHCKDLVLSDEQLREVMSKLLLAINKGLDKNTNKEAVVKCFPTYVQDLPNGKEKGKF 65
K+ + + L +E L++VM ++ +++GL T++EA VK PTYV+ P G E G F
Sbjct: 19 KVEQILAEFQLQEEDLKKVMRRMQKEMDRGLRLETHEEASVKMLPTYVRSTPEGSEVGDF 78
Query: 66 LALDLGGTNFRVLIIYL---EENHFKMESK--VYSIPQDIMTGSGTQLFDHIAECLADFM 120
L+LDLGGTNFRV+++ + EE + +++K +YSIP+D MTG+ LFD+I+EC++DF+
Sbjct: 79 LSLDLGGTNFRVMLVKVGEGEEGQWSVKTKHQMYSIPEDAMTGTAEMLFDYISECISDFL 138
Query: 121 RDNDVASERLPLGFTFSFPL 140
+ + ++LPLGFTFSFP+
Sbjct: 139 DKHQMKHKKLPLGFTFSFPV 158
>pdb|3QIC|A Chain A, The Structure Of Human Glucokinase E339k Mutation
Length = 470
Score = 131 bits (329), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 98/140 (70%), Gaps = 5/140 (3%)
Query: 6 KIREHCKDLVLSDEQLREVMSKLLLAINKGLDKNTNKEAVVKCFPTYVQDLPNGKEKGKF 65
K+ + + L +E L++VM ++ +++GL T++EA VK PTYV+ P G E G F
Sbjct: 20 KVEQILAEFQLQEEDLKKVMRRMQKEMDRGLRLETHEEASVKMLPTYVRSTPEGSEVGDF 79
Query: 66 LALDLGGTNFRVLIIYL---EENHFKMESK--VYSIPQDIMTGSGTQLFDHIAECLADFM 120
L+LDLGGTNFRV+++ + EE + +++K +YSIP+D MTG+ LFD+I+EC++DF+
Sbjct: 80 LSLDLGGTNFRVMLVKVGEGEEGQWSVKTKHQMYSIPEDAMTGTAEMLFDYISECISDFL 139
Query: 121 RDNDVASERLPLGFTFSFPL 140
+ + ++LPLGFTFSFP+
Sbjct: 140 DKHQMKHKKLPLGFTFSFPV 159
>pdb|3FR0|A Chain A, Human Glucokinase In Complex With 2-Amino Benzamide
Activator
pdb|3A0I|X Chain X, Human Glucokinase In Complex With A Synthetic Activator
pdb|3GOI|A Chain A, Human Glucokinase In Complex With A Synthetic Activator
Length = 455
Score = 130 bits (327), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 61/130 (46%), Positives = 94/130 (72%), Gaps = 5/130 (3%)
Query: 16 LSDEQLREVMSKLLLAINKGLDKNTNKEAVVKCFPTYVQDLPNGKEKGKFLALDLGGTNF 75
L +E L++VM ++ +++GL T++EA VK PTYV+ P G E G FL+LDLGGTNF
Sbjct: 15 LQEEDLKKVMRRMQKEMDRGLRLETHEEASVKMLPTYVRSTPEGSEVGDFLSLDLGGTNF 74
Query: 76 RVLIIYL---EENHFKMESK--VYSIPQDIMTGSGTQLFDHIAECLADFMRDNDVASERL 130
RV+++ + EE + +++K +YSIP+D MTG+ LFD+I+EC++DF+ + + ++L
Sbjct: 75 RVMLVKVGEGEEGQWSVKTKHQMYSIPEDAMTGTAEMLFDYISECISDFLDKHQMKHKKL 134
Query: 131 PLGFTFSFPL 140
PLGFTFSFP+
Sbjct: 135 PLGFTFSFPV 144
>pdb|1V4S|A Chain A, Crystal Structure Of Human Glucokinase
pdb|3VEY|A Chain A, Glucokinase In Complex With Glucose And Atpgs
Length = 455
Score = 130 bits (327), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 61/130 (46%), Positives = 94/130 (72%), Gaps = 5/130 (3%)
Query: 16 LSDEQLREVMSKLLLAINKGLDKNTNKEAVVKCFPTYVQDLPNGKEKGKFLALDLGGTNF 75
L +E L++VM ++ +++GL T++EA VK PTYV+ P G E G FL+LDLGGTNF
Sbjct: 15 LQEEDLKKVMRRMQKEMDRGLRLETHEEASVKMLPTYVRSTPEGSEVGDFLSLDLGGTNF 74
Query: 76 RVLIIYL---EENHFKMESK--VYSIPQDIMTGSGTQLFDHIAECLADFMRDNDVASERL 130
RV+++ + EE + +++K +YSIP+D MTG+ LFD+I+EC++DF+ + + ++L
Sbjct: 75 RVMLVKVGEGEEGQWSVKTKHQMYSIPEDAMTGTAEMLFDYISECISDFLDKHQMKHKKL 134
Query: 131 PLGFTFSFPL 140
PLGFTFSFP+
Sbjct: 135 PLGFTFSFPV 144
>pdb|1V4T|A Chain A, Crystal Structure Of Human Glucokinase
pdb|3H1V|X Chain X, Human Glucokinase In Complex With A Synthetic Activator
Length = 451
Score = 130 bits (327), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 61/130 (46%), Positives = 94/130 (72%), Gaps = 5/130 (3%)
Query: 16 LSDEQLREVMSKLLLAINKGLDKNTNKEAVVKCFPTYVQDLPNGKEKGKFLALDLGGTNF 75
L +E L++VM ++ +++GL T++EA VK PTYV+ P G E G FL+LDLGGTNF
Sbjct: 11 LQEEDLKKVMRRMQKEMDRGLRLETHEEASVKMLPTYVRSTPEGSEVGDFLSLDLGGTNF 70
Query: 76 RVLIIYL---EENHFKMESK--VYSIPQDIMTGSGTQLFDHIAECLADFMRDNDVASERL 130
RV+++ + EE + +++K +YSIP+D MTG+ LFD+I+EC++DF+ + + ++L
Sbjct: 71 RVMLVKVGEGEEGQWSVKTKHQMYSIPEDAMTGTAEMLFDYISECISDFLDKHQMKHKKL 130
Query: 131 PLGFTFSFPL 140
PLGFTFSFP+
Sbjct: 131 PLGFTFSFPV 140
>pdb|3IMX|A Chain A, Crystal Structure Of Human Glucokinase In Complex With A
Synthetic Activator
Length = 455
Score = 130 bits (327), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 61/130 (46%), Positives = 94/130 (72%), Gaps = 5/130 (3%)
Query: 16 LSDEQLREVMSKLLLAINKGLDKNTNKEAVVKCFPTYVQDLPNGKEKGKFLALDLGGTNF 75
L +E L++VM ++ +++GL T++EA VK PTYV+ P G E G FL+LDLGGTNF
Sbjct: 15 LQEEDLKKVMRRMQKEMDRGLRLETHEEASVKMLPTYVRSTPEGSEVGDFLSLDLGGTNF 74
Query: 76 RVLIIYL---EENHFKMESK--VYSIPQDIMTGSGTQLFDHIAECLADFMRDNDVASERL 130
RV+++ + EE + +++K +YSIP+D MTG+ LFD+I+EC++DF+ + + ++L
Sbjct: 75 RVMLVKVGEGEEGQWSVKTKHQMYSIPEDAMTGTAEMLFDYISECISDFLDKHQMKHKKL 134
Query: 131 PLGFTFSFPL 140
PLGFTFSFP+
Sbjct: 135 PLGFTFSFPV 144
>pdb|1BDG|A Chain A, Hexokinase From Schistosoma Mansoni Complexed With Glucose
Length = 451
Score = 124 bits (310), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 63/139 (45%), Positives = 90/139 (64%), Gaps = 2/139 (1%)
Query: 6 KIREHCKDLVLSDEQLREVMSKLLLAINKGLDKNTNKEAVVKCFPTYVQDLPNGKEKGKF 65
K+ E K LS E+ ++ ++ GL K+TN+++ +K FP+YV PNG E G F
Sbjct: 11 KVVEILKPFDLSVVDYEEICDRMGESMRLGLQKSTNEKSSIKMFPSYVTKTPNGTETGNF 70
Query: 66 LALDLGGTNFRVLIIYLE--ENHFKMESKVYSIPQDIMTGSGTQLFDHIAECLADFMRDN 123
LALDLGGTN+RVL + LE +++ + Y IP + M+GSGT+LF +IAE LADF+ +N
Sbjct: 71 LALDLGGTNYRVLSVTLEGKGKSPRIQERTYCIPAEKMSGSGTELFKYIAETLADFLENN 130
Query: 124 DVASERLPLGFTFSFPLTQ 142
+ ++ LGFTFSFP Q
Sbjct: 131 GMKDKKFDLGFTFSFPCVQ 149
>pdb|3HM8|A Chain A, Crystal Structure Of The C-Terminal Hexokinase Domain Of
Human Hk3
pdb|3HM8|B Chain B, Crystal Structure Of The C-Terminal Hexokinase Domain Of
Human Hk3
pdb|3HM8|C Chain C, Crystal Structure Of The C-Terminal Hexokinase Domain Of
Human Hk3
pdb|3HM8|D Chain D, Crystal Structure Of The C-Terminal Hexokinase Domain Of
Human Hk3
Length = 445
Score = 121 bits (303), Expect = 2e-28, Method: Composition-based stats.
Identities = 57/127 (44%), Positives = 86/127 (67%), Gaps = 4/127 (3%)
Query: 16 LSDEQLREVMSKLLLAINKGLDKNTNKEAVVKCFPTYVQDLPNGKEKGKFLALDLGGTNF 75
L+ +QL V +++ A+ KGL + + ++ PT+V+ P+G E+G FLALDLGGTNF
Sbjct: 15 LNHDQLAAVQAQMRKAMAKGL---RGEASSLRMLPTFVRATPDGSERGDFLALDLGGTNF 71
Query: 76 RVLIIYLEENHFKMESKVYSIPQDIMTGSGTQLFDHIAECLADFMRDNDVASERLPLGFT 135
RVL++ + ++ S++YSIP+ + GSG QLFDHI +C+ DF + ++ + LPLGFT
Sbjct: 72 RVLLVRVTTG-VQITSEIYSIPETVAQGSGQQLFDHIVDCIVDFQQKQGLSGQSLPLGFT 130
Query: 136 FSFPLTQ 142
FSFP Q
Sbjct: 131 FSFPCRQ 137
>pdb|3O08|A Chain A, Crystal Structure Of Dimeric Klhxk1 In Crystal Form I
pdb|3O08|B Chain B, Crystal Structure Of Dimeric Klhxk1 In Crystal Form I
pdb|3O1B|A Chain A, Crystal Structure Of Dimeric Klhxk1 In Crystal Form Ii
pdb|3O1W|A Chain A, Crystal Structure Of Dimeric Klhxk1 In Crystal Form Iii
pdb|3O1W|B Chain B, Crystal Structure Of Dimeric Klhxk1 In Crystal Form Iii
pdb|3O4W|A Chain A, Crystal Structure Of Dimeric Klhxk1 In Crystal Form Iv
pdb|3O4W|B Chain B, Crystal Structure Of Dimeric Klhxk1 In Crystal Form Iv
pdb|3O5B|A Chain A, Crystal Structure Of Dimeric Klhxk1 In Crystal Form Vii
With Glucose Bound (Open State)
pdb|3O5B|B Chain B, Crystal Structure Of Dimeric Klhxk1 In Crystal Form Vii
With Glucose Bound (Open State)
pdb|3O6W|A Chain A, Crystal Structure Of Monomeric Klhxk1 In Crystal Form Viii
(Open State)
pdb|3O6W|B Chain B, Crystal Structure Of Monomeric Klhxk1 In Crystal Form Viii
(Open State)
pdb|3O80|A Chain A, Crystal Structure Of Monomeric Klhxk1 In Crystal Form Ix
(Open State)
pdb|3O8M|A Chain A, Crystal Structure Of Monomeric Klhxk1 In Crystal Form Xi
With Glucose Bound (Closed State)
Length = 485
Score = 105 bits (261), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 55/132 (41%), Positives = 79/132 (59%), Gaps = 6/132 (4%)
Query: 14 LVLSDEQLREVMSKLLLAINKGLDKNTNKEAVVKCFPTYVQDLPNGKEKGKFLALDLGGT 73
+S E++R ++ + ++KGL K K + P +V + P GKE G FLALDLGGT
Sbjct: 34 FTVSSEKMRSIVKHFISELDKGLSK---KGGNIPMIPGWVVEYPTGKETGDFLALDLGGT 90
Query: 74 NFRVLIIYLEENH-FKMESKVYSIPQDIMTGSGTQLFDHIAECLADFMRD--NDVASERL 130
N RV+++ L NH F Y +P + TG+ QL+ IA+CL +F+ + D SE L
Sbjct: 91 NLRVVLVKLGGNHDFDTTQNKYRLPDHLRTGTSEQLWSFIAKCLKEFVDEWYPDGVSEPL 150
Query: 131 PLGFTFSFPLTQ 142
PLGFTFS+P +Q
Sbjct: 151 PLGFTFSYPASQ 162
>pdb|3B8A|X Chain X, Crystal Structure Of Yeast Hexokinase Pi In Complex With
Glucose
Length = 485
Score = 95.5 bits (236), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 52/133 (39%), Positives = 76/133 (57%), Gaps = 7/133 (5%)
Query: 14 LVLSDEQLREVMSKLLLAINKGLDKNTNKEAVVKCFPTYVQDLPNGKEKGKFLALDLGGT 73
+ E LR+V+ + +NKGL T K + P +V + P GKE G +LA+DLGGT
Sbjct: 34 FTVDSETLRKVVKHFIDELNKGL---TKKGGNIPMIPGWVMEFPTGKESGNYLAIDLGGT 90
Query: 74 NFRVLIIYLEENH-FKMESKVYSIPQDI-MTGSGTQLFDHIAECLADFMRDNDV--ASER 129
N RV+++ L NH F Y +P D+ T +L+ IA+ L DFM + ++ +
Sbjct: 91 NLRVVLVKLSGNHTFDTTQSKYKLPHDMRTTKHQEELWSFIADSLKDFMVEQELLNTKDT 150
Query: 130 LPLGFTFSFPLTQ 142
LPLGFTFS+P +Q
Sbjct: 151 LPLGFTFSYPASQ 163
>pdb|1IG8|A Chain A, Crystal Structure Of Yeast Hexokinase Pii With The Correct
Amino Acid Sequence
Length = 486
Score = 82.0 bits (201), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 73/141 (51%), Gaps = 7/141 (4%)
Query: 6 KIREHCKDLVLSDEQLREVMSKLLLAINKGLDKNTNKEAVVKCFPTYVQDLPNGKEKGKF 65
+I K + E L+ V + + KGL K K + P +V D P GKE G F
Sbjct: 26 QIENFEKIFTVPTETLQAVTKHFISELEKGLSK---KGGNIPMIPGWVMDFPTGKESGDF 82
Query: 66 LALDLGGTNFRVLIIYL-EENHFKMESKVYSIPQDIMTGSGT-QLFDHIAECLADFMRDN 123
LA+DLGGTN RV+++ L + F Y +P + T +L++ IA+ L F+ +
Sbjct: 83 LAIDLGGTNLRVVLVKLGGDRTFDTTQSKYRLPDAMRTTQNPDELWEFIADSLKAFIDEQ 142
Query: 124 --DVASERLPLGFTFSFPLTQ 142
SE +PLGFTFSFP +Q
Sbjct: 143 FPQGISEPIPLGFTFSFPASQ 163
>pdb|2QCV|A Chain A, Crystal Structure Of A Putative
5-Dehydro-2-Deoxygluconokinase (Iolc) From Bacillus
Halodurans C-125 At 1.90 A Resolution
Length = 332
Score = 31.2 bits (69), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 8 REHCKDLVLSDEQLREVM---SKLLLAINKGLDKNTNKEAVVKCF 49
R+ DL LS E++ E SKLLL L K+ ++EAV+K
Sbjct: 118 RQDVADLYLSPEEVNEAYIRRSKLLLVSGTALSKSPSREAVLKAI 162
>pdb|3GW7|A Chain A, Crystal Structure Of A Metal-Dependent Phosphohydrolase
With Conserved Hd Domain (Yedj) From Escherichia Coli In
Complex With Nickel Ions. Northeast Structural Genomics
Consortium Target Er63
pdb|3GW7|B Chain B, Crystal Structure Of A Metal-Dependent Phosphohydrolase
With Conserved Hd Domain (Yedj) From Escherichia Coli In
Complex With Nickel Ions. Northeast Structural Genomics
Consortium Target Er63
Length = 239
Score = 29.3 bits (64), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 85 NHFKMESKVYSIPQDIMTGSGTQLFDHIAECLADFM 120
+HF ++K+ +PQ + T G QL H A L +FM
Sbjct: 172 DHF--QTKLLKLPQTMQTARGKQLAQHNAHFLVEFM 205
>pdb|1UDE|A Chain A, Crystal Structure Of The Inorganic Pyrophosphatase From
The Hyperthermophilic Archaeon Pyrococcus Horikoshii Ot3
pdb|1UDE|B Chain B, Crystal Structure Of The Inorganic Pyrophosphatase From
The Hyperthermophilic Archaeon Pyrococcus Horikoshii Ot3
pdb|1UDE|C Chain C, Crystal Structure Of The Inorganic Pyrophosphatase From
The Hyperthermophilic Archaeon Pyrococcus Horikoshii Ot3
Length = 195
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 26/49 (53%)
Query: 50 PTYVQDLPNGKEKGKFLALDLGGTNFRVLIIYLEENHFKMESKVYSIPQ 98
PTY + + G F +D G +++VL + +E+ +FK + +P+
Sbjct: 96 PTYPLTIIEARPIGLFKMIDSGDKDYKVLAVPVEDPYFKDWKDISDVPK 144
>pdb|3EO3|A Chain A, Crystal Structure Of The N-Acetylmannosamine Kinase
Domain Of Human Gne Protein
pdb|3EO3|B Chain B, Crystal Structure Of The N-Acetylmannosamine Kinase
Domain Of Human Gne Protein
pdb|3EO3|C Chain C, Crystal Structure Of The N-Acetylmannosamine Kinase
Domain Of Human Gne Protein
Length = 333
Score = 27.7 bits (60), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/18 (61%), Positives = 15/18 (83%)
Query: 66 LALDLGGTNFRVLIIYLE 83
LA+DLGGTN RV I+ ++
Sbjct: 23 LAVDLGGTNLRVAIVSMK 40
>pdb|2YHW|A Chain A, High-Resolution Crystal Structures Of
N-Acetylmannosamine Kinase: Insights About Substrate
Specificity, Activity And Inhibitor Modelling
Length = 343
Score = 27.7 bits (60), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/18 (61%), Positives = 15/18 (83%)
Query: 66 LALDLGGTNFRVLIIYLE 83
LA+DLGGTN RV I+ ++
Sbjct: 33 LAVDLGGTNLRVAIVSMK 50
>pdb|2YHY|A Chain A, Structure Of N-Acetylmannosamine Kinase In Complex With
N- Acetylmannosamine And Adp
pdb|2YI1|A Chain A, Crystal Structure Of N-Acetylmannosamine Kinase In
Complex With N-Acetyl Mannosamine 6-Phosphate And Adp
Length = 343
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/18 (61%), Positives = 15/18 (83%)
Query: 66 LALDLGGTNFRVLIIYLE 83
LA+DLGGTN RV I+ ++
Sbjct: 33 LAVDLGGTNLRVAIVSMK 50
>pdb|2YHX|A Chain A, Sequencing A Protein By X-Ray Crystallography. Ii.
Refinement Of Yeast Hexokinase B Co-Ordinates And
Sequence At 2.1 Angstroms Resolution
Length = 457
Score = 27.3 bits (59), Expect = 2.6, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 50 PTYVQDLPNGKEKGKFLALDLGGTNFRVLIIYL 82
P +V +G + G FLA+ +GG + V++I L
Sbjct: 48 PGWVLKQVSGAQAGSFLAIVMGGGDLEVILISL 80
>pdb|1PAF|A Chain A, The 2.5 Angstroms Structure Of Pokeweed Antiviral
Protein
pdb|1PAF|B Chain B, The 2.5 Angstroms Structure Of Pokeweed Antiviral
Protein
pdb|1PAG|A Chain A, The 2.5 Angstroms Structure Of Pokeweed Antiviral
Protein
pdb|1PAG|B Chain B, The 2.5 Angstroms Structure Of Pokeweed Antiviral
Protein
pdb|1QCG|A Chain A, Low Temperature Structure Of Pokeweed Antiviral Protein
pdb|1QCG|B Chain B, Low Temperature Structure Of Pokeweed Antiviral Protein
pdb|1QCI|A Chain A, Low Temperature Structure Of Pokeweed Antiviral Protein
Complexed With Adenine
pdb|1QCI|B Chain B, Low Temperature Structure Of Pokeweed Antiviral Protein
Complexed With Adenine
pdb|1QCJ|A Chain A, Low Temperature Complex Of Pokeweed Antiviral Protein
With Pteoric Acid
pdb|1QCJ|B Chain B, Low Temperature Complex Of Pokeweed Antiviral Protein
With Pteoric Acid
pdb|1D6A|A Chain A, Structure Of Pokeweed Antiviral Protein Complexed With
Guanine
pdb|1D6A|B Chain B, Structure Of Pokeweed Antiviral Protein Complexed With
Guanine
Length = 262
Score = 27.3 bits (59), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 38 KNTNKEAVVKCFPTYVQDLPNGKEKGKFLALDLGGTNFRVLIIYLEENHF 87
+N K+ +KC+ + LPN K++ ++L G+N + + + L N+
Sbjct: 24 RNEAKDPSLKCYG--IPMLPNTNTNPKYVLVELQGSNKKTITLMLRRNNL 71
>pdb|1HKG|A Chain A, Structural Dynamics Of Yeast Hexokinase During Catalysis
Length = 457
Score = 27.3 bits (59), Expect = 3.2, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 50 PTYVQDLPNGKEKGKFLALDLGGTNFRVLIIYL 82
P +V G + G FLA+ +GG + V++I L
Sbjct: 48 PGWVLKQVXGSQAGSFLAIVMGGGDLEVILIXL 80
>pdb|3M1M|A Chain A, Crystal Structure Of The Primase-Polymerase From
Sulfolobus Islandicus
Length = 335
Score = 26.9 bits (58), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 23/37 (62%)
Query: 41 NKEAVVKCFPTYVQDLPNGKEKGKFLALDLGGTNFRV 77
+K+ V+K + Y ++P+ +EK +FL + G N+ +
Sbjct: 29 SKKPVLKEWQKYSHEMPSDEEKQRFLKMIEEGYNYAI 65
>pdb|1GMX|A Chain A, Escherichia Coli Glpe Sulfurtransferase
Length = 108
Score = 26.9 bits (58), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 13/28 (46%)
Query: 97 PQDIMTGSGTQLFDHIAECLADFMRDND 124
PQ G Q F + L FMRDND
Sbjct: 29 PQSFAMGHAVQAFHLTNDTLGAFMRDND 56
>pdb|1NF2|A Chain A, X-Ray Crystal Structure Of Tm0651 From Thermotoga Maritima
pdb|1NF2|B Chain B, X-Ray Crystal Structure Of Tm0651 From Thermotoga Maritima
pdb|1NF2|C Chain C, X-Ray Crystal Structure Of Tm0651 From Thermotoga Maritima
Length = 268
Score = 26.9 bits (58), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 45 VVKCFPTYVQDLPNGKEKGKFL 66
V K FPTY++ +P +KGK L
Sbjct: 174 VFKSFPTYLEIVPKNVDKGKAL 195
>pdb|1GN0|A Chain A, Escherichia Coli Glpe Sulfurtransferase Soaked With Kcn
Length = 108
Score = 26.9 bits (58), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 13/28 (46%)
Query: 97 PQDIMTGSGTQLFDHIAECLADFMRDND 124
PQ G Q F + L FMRDND
Sbjct: 29 PQSFAMGHAVQAFHLTNDTLGAFMRDND 56
>pdb|1BA0|A Chain A, Heat-Shock Cognate 70kd Protein 44kd Atpase N-Terminal
1nge 3
Length = 386
Score = 26.6 bits (57), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 19/71 (26%)
Query: 21 LREVMSKLLLAINKGLDKNTNKEAVVKCFPTYVQDLPNGKEKGKFLALDLGGTNFRVLII 80
LR + AI GLDK E V F DLGG F+V I+
Sbjct: 170 LRIINEPTAAAIAYGLDKKVGAERNVLIF-------------------DLGGGTFKVSIL 210
Query: 81 YLEENHFKMES 91
+E+ F+++S
Sbjct: 211 TIEDGIFEVKS 221
>pdb|1GIK|A Chain A, Pokeweed Antiviral Protein From Seeds
pdb|1J1Q|A Chain A, Structure Of Pokeweed Antiviral Protein From Seeds
(Pap-S1)
pdb|1J1R|A Chain A, Structure Of Pokeweed Antiviral Protein From Seeds
(Pap-S1) Complexed With Adenine
pdb|1J1S|A Chain A, Pokeweed Antiviral Protein From Seeds (Pap-S1) Complexed
With Formycin
Length = 261
Score = 26.6 bits (57), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 38 KNTNKEAVVKCFPTYVQDLPNGKEKGKFLALDLGGTNFRVLIIYLEENHFKMESKVYSIP 97
+N K+ +KC+ + LPN K+L + L G + + + + L N+ + YS P
Sbjct: 24 RNEAKDPSLKCYG--IPMLPNTNSTIKYLLVKLQGASLKTITLMLRRNNLYVMG--YSDP 79
Query: 98 QD 99
D
Sbjct: 80 YD 81
>pdb|1RO0|A Chain A, Bifunctional Dna PrimasePOLYMERASE DOMAIN OF ORF904 FROM
The Archaeal Plasmid Prn1- Triple Mutant F50mL107ML110M
Semet Remote
pdb|1RO2|A Chain A, Bifunctional Dna PrimasePOLYMERASE DOMAIN OF ORF904 FROM
The Archaeal Plasmid Prn1- Triple Mutant F50mL107ML110M
Manganese Soak
Length = 216
Score = 26.6 bits (57), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 23/37 (62%)
Query: 41 NKEAVVKCFPTYVQDLPNGKEKGKFLALDLGGTNFRV 77
+K+ V+K + Y ++P+ +EK +FL + G N+ +
Sbjct: 25 SKKPVLKEWQKYSHEMPSDEEKQRFLKMIEEGYNYAI 61
>pdb|2Q8W|A Chain A, Crystal Structure Of Pap-S1aci, A Pokeweed Antiviral
Protein From Seeds Of Phytolacca Acinosa
Length = 261
Score = 26.6 bits (57), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 38 KNTNKEAVVKCFPTYVQDLPNGKEKGKFLALDLGGTNFRVLIIYLEENHFKMESKVYSIP 97
+N K+ +KC+ + LPN K+L + L G + + + + L N+ + YS P
Sbjct: 24 RNEAKDPSLKCYG--IPMLPNTNSTIKYLLVKLQGASLKTITLILRRNNLYVMG--YSDP 79
Query: 98 QD 99
D
Sbjct: 80 YD 81
>pdb|1RNI|A Chain A, Bifunctional Dna PrimasePOLYMERASE DOMAIN OF ORF904 FROM
THE ARCHAEAL Plasmid Prn1
Length = 216
Score = 26.6 bits (57), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 23/37 (62%)
Query: 41 NKEAVVKCFPTYVQDLPNGKEKGKFLALDLGGTNFRV 77
+K+ V+K + Y ++P+ +EK +FL + G N+ +
Sbjct: 25 SKKPVLKEWQKYSHEMPSDEEKQRFLKMIEEGYNYAI 61
>pdb|1TWL|A Chain A, Inorganic Pyrophosphatase From Pyrococcus Furiosus
Pfu-264096-001
Length = 186
Score = 26.6 bits (57), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/84 (21%), Positives = 36/84 (42%), Gaps = 7/84 (8%)
Query: 22 REVMSKLLLAINKGLDKNTNKE-------AVVKCFPTYVQDLPNGKEKGKFLALDLGGTN 74
R + S ++ G+ T E V+ P Y + + G F +D G +
Sbjct: 52 RVLYSPFFYPVDYGIIPRTWYEDDDPFDIMVIMREPVYPLTIIEARPIGLFKMIDSGDKD 111
Query: 75 FRVLIIYLEENHFKMESKVYSIPQ 98
++VL + +E+ +FK + +P+
Sbjct: 112 YKVLAVPVEDPYFKDWKDIDDVPK 135
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,322,535
Number of Sequences: 62578
Number of extensions: 178695
Number of successful extensions: 453
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 385
Number of HSP's gapped (non-prelim): 47
length of query: 142
length of database: 14,973,337
effective HSP length: 89
effective length of query: 53
effective length of database: 9,403,895
effective search space: 498406435
effective search space used: 498406435
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)