Query psy6344
Match_columns 142
No_of_seqs 116 out of 701
Neff 7.0
Searched_HMMs 46136
Date Sat Aug 17 00:00:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6344.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6344hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00349 Hexokinase_1: Hexokin 100.0 1.5E-49 3.3E-54 307.4 13.9 140 3-142 3-145 (206)
2 PLN02914 hexokinase 100.0 1.8E-45 3.9E-50 313.9 14.9 138 3-142 37-182 (490)
3 PLN02405 hexokinase 100.0 2.2E-45 4.8E-50 314.0 15.1 138 3-142 37-182 (497)
4 PLN02596 hexokinase-like 100.0 2.5E-45 5.5E-50 313.0 14.5 137 4-142 39-183 (490)
5 PLN02362 hexokinase 100.0 3.4E-45 7.3E-50 313.6 14.6 138 3-142 37-182 (509)
6 PTZ00107 hexokinase; Provision 100.0 9.8E-45 2.1E-49 308.3 14.3 140 3-142 7-166 (464)
7 KOG1369|consensus 100.0 3.6E-41 7.7E-46 285.1 13.5 140 2-142 26-168 (474)
8 COG5026 Hexokinase [Carbohydra 100.0 4.9E-37 1.1E-41 255.9 13.1 139 2-142 16-158 (466)
9 PF00370 FGGY_N: FGGY family o 97.3 0.0025 5.4E-08 49.7 9.1 59 65-123 2-63 (245)
10 PRK09698 D-allose kinase; Prov 97.0 0.0054 1.2E-07 49.2 8.9 68 62-139 3-70 (302)
11 PRK13311 N-acetyl-D-glucosamin 96.9 0.0058 1.3E-07 48.2 8.3 51 65-121 2-52 (256)
12 smart00732 YqgFc Likely ribonu 96.9 0.0066 1.4E-07 40.6 7.3 48 64-118 2-49 (99)
13 COG1940 NagC Transcriptional r 96.9 0.0093 2E-07 48.1 9.3 71 61-139 4-75 (314)
14 PRK12408 glucokinase; Provisio 96.8 0.0026 5.6E-08 52.5 5.4 25 58-82 10-35 (336)
15 TIGR01314 gntK_FGGY gluconate 96.8 0.0087 1.9E-07 51.7 8.8 59 65-123 2-63 (505)
16 TIGR00744 ROK_glcA_fam ROK fam 96.6 0.012 2.7E-07 47.3 8.2 66 66-139 1-66 (318)
17 PF00480 ROK: ROK family; Int 96.6 0.0076 1.7E-07 44.4 6.5 60 67-139 1-60 (179)
18 PRK10939 autoinducer-2 (AI-2) 96.5 0.017 3.7E-07 50.1 8.7 73 64-137 4-81 (520)
19 PRK13310 N-acetyl-D-glucosamin 96.5 0.018 3.9E-07 46.2 8.3 51 65-122 2-53 (303)
20 PRK00292 glk glucokinase; Prov 96.5 0.0093 2E-07 48.4 6.5 19 64-82 3-21 (316)
21 TIGR01311 glycerol_kin glycero 96.4 0.02 4.4E-07 49.3 8.5 60 65-124 3-65 (493)
22 TIGR01234 L-ribulokinase L-rib 96.4 0.022 4.7E-07 49.7 8.6 60 65-124 3-77 (536)
23 PLN02295 glycerol kinase 96.3 0.026 5.6E-07 48.9 8.7 60 65-124 2-64 (512)
24 PRK09557 fructokinase; Reviewe 96.3 0.027 5.9E-07 45.2 8.3 51 65-122 2-53 (301)
25 PTZ00288 glucokinase 1; Provis 96.3 0.02 4.3E-07 48.8 7.6 55 64-120 27-82 (405)
26 TIGR01315 5C_CHO_kinase FGGY-f 96.2 0.03 6.6E-07 48.9 8.7 60 65-124 2-64 (541)
27 PRK00047 glpK glycerol kinase; 96.2 0.027 5.8E-07 48.6 8.1 61 64-124 6-69 (498)
28 PRK15027 xylulokinase; Provisi 96.2 0.035 7.5E-07 47.7 8.7 59 65-123 2-63 (484)
29 COG1070 XylB Sugar (pentulose 96.0 0.048 1E-06 47.3 8.9 60 64-123 5-68 (502)
30 PTZ00294 glycerol kinase-like 96.0 0.047 1E-06 47.2 8.8 60 64-123 3-65 (504)
31 PRK05082 N-acetylmannosamine k 96.0 0.052 1.1E-06 43.3 8.4 52 65-121 3-54 (291)
32 PRK10331 L-fuculokinase; Provi 95.9 0.052 1.1E-06 46.5 8.5 59 64-122 3-66 (470)
33 PRK14101 bifunctional glucokin 95.6 0.021 4.6E-07 50.9 5.2 20 63-82 18-37 (638)
34 TIGR01312 XylB D-xylulose kina 95.5 0.063 1.4E-06 45.7 7.7 71 66-137 1-74 (481)
35 TIGR02628 fuculo_kin_coli L-fu 95.5 0.076 1.6E-06 45.5 8.1 58 65-122 3-65 (465)
36 PRK04123 ribulokinase; Provisi 95.2 0.15 3.3E-06 44.5 9.1 61 64-124 4-74 (548)
37 PRK13321 pantothenate kinase; 95.1 0.11 2.3E-06 41.3 7.3 48 65-118 2-49 (256)
38 TIGR00749 glk glucokinase, pro 94.9 0.051 1.1E-06 44.2 5.0 17 66-82 1-17 (316)
39 PF02685 Glucokinase: Glucokin 93.8 0.24 5.3E-06 40.8 6.7 47 66-118 1-48 (316)
40 PRK13318 pantothenate kinase; 93.8 0.34 7.3E-06 38.4 7.4 17 65-81 2-18 (258)
41 TIGR02627 rhamnulo_kin rhamnul 93.1 0.41 8.9E-06 40.8 7.2 55 66-121 1-63 (454)
42 smart00842 FtsA Cell division 92.5 0.96 2.1E-05 33.9 7.8 56 65-121 1-57 (187)
43 TIGR01175 pilM type IV pilus a 91.3 2.1 4.6E-05 34.8 9.1 61 64-125 4-66 (348)
44 PLN02669 xylulokinase 91.0 1.3 2.8E-05 39.1 8.1 62 55-120 3-81 (556)
45 TIGR00241 CoA_E_activ CoA-subs 90.4 1.3 2.8E-05 34.7 6.8 47 65-123 2-48 (248)
46 PF01869 BcrAD_BadFG: BadF/Bad 88.9 2 4.2E-05 33.9 6.9 58 66-126 1-58 (271)
47 PRK13411 molecular chaperone D 87.9 2.1 4.5E-05 38.6 7.1 30 62-91 185-214 (653)
48 TIGR02350 prok_dnaK chaperone 87.8 2.1 4.6E-05 37.8 7.0 30 62-91 182-211 (595)
49 TIGR01174 ftsA cell division p 87.7 4.3 9.4E-05 33.6 8.5 56 65-121 2-58 (371)
50 CHL00094 dnaK heat shock prote 87.6 2.1 4.6E-05 38.2 6.9 31 63-93 187-217 (621)
51 PF00012 HSP70: Hsp70 protein; 87.5 1.7 3.7E-05 37.9 6.2 32 61-92 186-217 (602)
52 PRK00290 dnaK molecular chaper 86.6 2.1 4.7E-05 38.1 6.4 29 63-91 185-213 (627)
53 COG1069 AraB Ribulose kinase [ 86.2 3 6.4E-05 37.0 6.8 76 64-140 4-83 (544)
54 PRK13410 molecular chaperone D 86.0 3.1 6.6E-05 37.7 7.1 52 62-116 186-239 (668)
55 KOG2517|consensus 85.6 4.3 9.4E-05 35.8 7.6 61 62-122 5-69 (516)
56 PTZ00186 heat shock 70 kDa pre 85.2 3.3 7.2E-05 37.4 7.0 29 63-91 212-240 (657)
57 COG0837 Glk Glucokinase [Carbo 83.8 2.7 5.9E-05 34.8 5.3 19 64-82 7-25 (320)
58 PLN03184 chloroplast Hsp70; Pr 81.1 7.9 0.00017 35.1 7.7 31 62-92 223-253 (673)
59 PRK05183 hscA chaperone protei 81.1 7.8 0.00017 34.7 7.6 29 62-90 200-228 (616)
60 TIGR01991 HscA Fe-S protein as 78.8 11 0.00024 33.6 7.8 29 62-90 180-208 (599)
61 PTZ00009 heat shock 70 kDa pro 78.7 10 0.00022 34.2 7.6 30 62-91 193-222 (653)
62 PRK09472 ftsA cell division pr 78.2 27 0.00058 29.6 9.6 55 64-118 9-67 (420)
63 PRK15080 ethanolamine utilizat 77.5 11 0.00024 29.9 6.8 61 57-121 18-78 (267)
64 PRK01433 hscA chaperone protei 75.9 14 0.00031 33.0 7.6 30 61-90 191-220 (595)
65 PF11104 PilM_2: Type IV pilus 75.3 14 0.0003 30.2 7.0 60 67-126 1-61 (340)
66 PF14574 DUF4445: Domain of un 75.0 4.5 9.6E-05 34.7 4.1 21 66-86 4-25 (412)
67 COG0443 DnaK Molecular chapero 73.8 16 0.00034 32.6 7.4 25 61-85 170-194 (579)
68 COG2971 Predicted N-acetylgluc 73.5 17 0.00038 29.9 7.0 59 64-125 6-64 (301)
69 TIGR00555 panK_eukar pantothen 73.0 9.5 0.0002 31.0 5.3 18 65-82 2-19 (279)
70 COG3734 DgoK 2-keto-3-deoxy-ga 72.5 3.6 7.9E-05 33.8 2.8 21 62-82 4-24 (306)
71 PTZ00400 DnaK-type molecular c 72.3 16 0.00035 33.0 7.1 27 64-90 227-253 (663)
72 TIGR03123 one_C_unchar_1 proba 72.2 3.1 6.8E-05 34.5 2.4 21 62-82 127-147 (318)
73 COG0554 GlpK Glycerol kinase [ 70.4 15 0.00032 32.4 6.1 72 63-135 5-81 (499)
74 TIGR02707 butyr_kinase butyrat 69.8 13 0.00027 31.2 5.5 55 65-124 2-60 (351)
75 PRK13324 pantothenate kinase; 66.7 27 0.00058 28.0 6.7 47 65-116 2-48 (258)
76 TIGR00671 baf pantothenate kin 65.2 33 0.00071 27.0 6.9 45 66-116 2-46 (243)
77 PF01968 Hydantoinase_A: Hydan 64.7 7.1 0.00015 31.6 3.0 18 64-81 78-95 (290)
78 cd00529 RuvC_resolvase Hollida 61.3 57 0.0012 23.7 7.1 26 64-89 1-26 (154)
79 COG0145 HyuA N-methylhydantoin 60.7 8.2 0.00018 35.2 2.9 62 19-81 209-296 (674)
80 PRK10753 transcriptional regul 60.2 23 0.00049 23.6 4.4 39 1-39 1-39 (90)
81 PF09907 DUF2136: Uncharacteri 60.0 12 0.00027 24.5 3.0 22 63-84 36-58 (76)
82 KOG3281|consensus 59.4 9.7 0.00021 30.7 2.8 33 44-77 147-179 (273)
83 PF11215 DUF3010: Protein of u 59.0 44 0.00095 24.5 6.0 54 65-118 3-59 (138)
84 PF14450 FtsA: Cell division p 58.6 24 0.00052 24.4 4.5 18 65-82 1-18 (120)
85 TIGR00987 himA integration hos 58.6 23 0.0005 23.7 4.3 39 1-39 2-40 (96)
86 PRK13320 pantothenate kinase; 58.0 11 0.00025 29.7 3.1 17 65-81 4-20 (244)
87 PRK10664 transcriptional regul 57.2 28 0.00061 23.2 4.5 39 1-39 1-39 (90)
88 PTZ00186 heat shock 70 kDa pre 56.1 15 0.00033 33.3 3.8 34 44-81 12-45 (657)
89 smart00411 BHL bacterial (prok 55.5 31 0.00067 22.4 4.4 38 1-38 1-38 (90)
90 PF02075 RuvC: Crossover junct 55.5 77 0.0017 23.0 6.9 55 65-119 1-57 (149)
91 PRK13317 pantothenate kinase; 55.2 12 0.00026 30.2 2.8 19 64-82 3-21 (277)
92 COG3894 Uncharacterized metal- 55.0 20 0.00043 32.0 4.2 31 56-86 157-188 (614)
93 TIGR03123 one_C_unchar_1 proba 54.8 12 0.00025 31.1 2.7 17 66-82 1-17 (318)
94 PRK00039 ruvC Holliday junctio 51.9 88 0.0019 23.2 6.8 56 64-119 3-60 (164)
95 PRK13410 molecular chaperone D 50.9 15 0.00033 33.3 3.0 20 63-82 2-21 (668)
96 TIGR03286 methan_mark_15 putat 50.4 14 0.0003 31.7 2.5 23 59-81 140-162 (404)
97 PRK00290 dnaK molecular chaper 50.3 16 0.00035 32.6 3.1 18 64-81 3-20 (627)
98 PF05402 PqqD: Coenzyme PQQ sy 49.8 38 0.00083 20.6 4.0 33 2-34 31-63 (68)
99 PRK13326 pantothenate kinase; 49.7 66 0.0014 25.8 6.2 18 64-81 7-24 (262)
100 PRK00199 ihfB integration host 48.7 47 0.001 22.0 4.5 39 1-39 1-40 (94)
101 PTZ00009 heat shock 70 kDa pro 48.7 18 0.00039 32.6 3.1 19 63-81 4-22 (653)
102 PF03309 Pan_kinase: Type III 48.3 22 0.00048 27.0 3.2 17 65-81 1-17 (206)
103 PRK00285 ihfA integration host 48.3 41 0.0009 22.5 4.2 39 1-39 3-41 (99)
104 PF00012 HSP70: Hsp70 protein; 47.1 19 0.00041 31.4 3.0 17 65-81 1-17 (602)
105 PRK13411 molecular chaperone D 47.0 19 0.00042 32.4 3.1 19 63-81 2-20 (653)
106 PRK05183 hscA chaperone protei 46.9 20 0.00044 32.1 3.1 19 63-81 19-37 (616)
107 PTZ00400 DnaK-type molecular c 46.7 19 0.00041 32.6 3.0 19 63-81 41-59 (663)
108 PF00216 Bac_DNA_binding: Bact 46.4 31 0.00068 22.2 3.3 39 1-39 1-39 (90)
109 PRK11678 putative chaperone; P 45.1 30 0.00066 29.8 3.8 20 63-82 209-228 (450)
110 TIGR02350 prok_dnaK chaperone 45.0 21 0.00046 31.6 3.0 17 65-81 2-18 (595)
111 KOG1903|consensus 45.0 16 0.00034 27.9 1.8 69 49-118 45-132 (217)
112 TIGR03706 exo_poly_only exopol 44.7 1.5E+02 0.0033 23.7 7.7 57 65-121 2-63 (300)
113 PF05378 Hydant_A_N: Hydantoin 44.3 22 0.00048 26.6 2.6 17 66-82 2-18 (176)
114 CHL00094 dnaK heat shock prote 43.5 23 0.00051 31.6 3.0 18 64-81 3-20 (621)
115 TIGR00988 hip integration host 43.5 64 0.0014 21.2 4.5 39 1-39 1-40 (94)
116 PRK11538 ribosome-associated p 43.3 68 0.0015 22.1 4.7 42 16-72 43-84 (105)
117 COG0776 HimA Bacterial nucleoi 42.9 56 0.0012 22.3 4.2 38 1-38 2-39 (94)
118 TIGR02148 Fibro_Slime fibro-sl 42.5 14 0.0003 25.2 1.1 10 66-75 38-47 (90)
119 PF06406 StbA: StbA protein; 42.4 30 0.00064 28.2 3.2 21 61-81 162-182 (318)
120 PTZ00297 pantothenate kinase; 41.2 73 0.0016 31.9 6.1 56 22-82 987-1058(1452)
121 PRK01742 tolB translocation pr 41.2 71 0.0015 26.9 5.4 64 11-77 135-198 (429)
122 COG0849 ftsA Cell division ATP 40.8 1.6E+02 0.0035 25.4 7.5 58 64-122 7-65 (418)
123 PF13941 MutL: MutL protein 40.4 45 0.00099 29.1 4.2 19 64-82 1-19 (457)
124 COG5146 PanK Pantothenate kina 40.4 57 0.0012 26.6 4.4 48 65-120 20-67 (342)
125 PTZ00378 hypothetical protein; 40.4 48 0.001 29.5 4.3 61 59-119 275-342 (518)
126 PRK04792 tolB translocation pr 39.7 91 0.002 26.5 5.9 63 12-77 150-212 (448)
127 PRK13331 pantothenate kinase; 38.1 41 0.00089 26.9 3.4 20 62-81 6-25 (251)
128 TIGR00904 mreB cell shape dete 37.9 1.5E+02 0.0033 23.9 6.7 20 64-83 151-170 (333)
129 PRK10854 exopolyphosphatase; P 37.5 2.5E+02 0.0055 24.5 8.4 58 64-121 12-74 (513)
130 PRK13927 rod shape-determining 36.9 1.2E+02 0.0025 24.5 5.9 19 65-83 150-168 (334)
131 COG4972 PilM Tfp pilus assembl 36.9 1.3E+02 0.0028 25.5 6.1 62 64-125 11-73 (354)
132 TIGR01991 HscA Fe-S protein as 35.9 32 0.0007 30.7 2.7 16 66-81 2-17 (599)
133 PLN02666 5-oxoprolinase 35.3 33 0.00072 33.7 2.8 17 64-80 315-331 (1275)
134 PF02268 TFIIA_gamma_N: Transc 35.3 70 0.0015 19.2 3.3 36 2-37 14-49 (49)
135 PLN03184 chloroplast Hsp70; Pr 35.1 45 0.00097 30.3 3.5 18 64-81 40-57 (673)
136 PF06992 Phage_lambda_P: Repli 34.7 52 0.0011 26.2 3.4 56 7-63 160-215 (233)
137 PRK13929 rod-share determining 34.5 32 0.0007 28.1 2.3 15 64-78 5-19 (335)
138 TIGR00904 mreB cell shape dete 34.3 33 0.00072 27.8 2.3 14 66-79 5-18 (333)
139 PF06723 MreB_Mbl: MreB/Mbl pr 33.9 40 0.00087 28.0 2.8 16 64-79 2-17 (326)
140 TIGR02261 benz_CoA_red_D benzo 33.8 1.5E+02 0.0032 23.9 5.9 18 65-82 3-20 (262)
141 COG1077 MreB Actin-like ATPase 33.7 52 0.0011 27.7 3.3 53 57-116 148-200 (342)
142 KOG0100|consensus 33.6 87 0.0019 27.6 4.8 28 64-91 226-253 (663)
143 PRK11031 guanosine pentaphosph 33.4 2.4E+02 0.0052 24.6 7.6 57 64-121 7-69 (496)
144 PRK00109 Holliday junction res 32.6 98 0.0021 22.2 4.3 20 62-81 3-22 (138)
145 PRK13928 rod shape-determining 32.6 35 0.00077 27.7 2.2 15 66-80 6-20 (336)
146 COG0799 Uncharacterized homolo 32.3 1.2E+02 0.0027 21.4 4.7 42 16-72 43-84 (115)
147 PF04848 Pox_A22: Poxvirus A22 31.8 1E+02 0.0022 22.7 4.3 20 65-84 3-23 (143)
148 PRK13927 rod shape-determining 31.1 45 0.00097 26.9 2.6 15 65-79 7-21 (334)
149 PF05372 Delta_lysin: Delta ly 31.0 57 0.0012 16.7 2.0 15 106-120 10-24 (25)
150 PF12078 DUF3557: Domain of un 30.4 50 0.0011 23.4 2.5 13 130-142 142-154 (154)
151 TIGR01201 HU_rel DNA-binding p 30.3 1E+02 0.0022 22.4 4.1 39 1-39 31-69 (145)
152 PRK03629 tolB translocation pr 30.0 1.6E+02 0.0035 24.8 5.9 63 12-77 131-193 (429)
153 PF11405 Inhibitor_I67: Bromel 30.0 30 0.00065 19.5 1.0 13 60-72 23-35 (41)
154 COG1521 Pantothenate kinase ty 29.3 2.1E+02 0.0046 22.9 6.1 17 65-81 2-18 (251)
155 PF03630 Fumble: Fumble ; Int 29.1 58 0.0013 27.2 3.0 18 65-82 2-19 (341)
156 TIGR02259 benz_CoA_red_A benzo 29.1 46 0.001 28.9 2.4 19 64-82 3-21 (432)
157 PRK13929 rod-share determining 29.0 2.2E+02 0.0048 23.1 6.4 21 64-84 151-171 (335)
158 PF11687 DUF3284: Domain of un 28.9 79 0.0017 22.1 3.3 35 102-137 8-45 (120)
159 COG0443 DnaK Molecular chapero 28.9 57 0.0012 29.1 3.1 21 63-83 5-25 (579)
160 PRK13322 pantothenate kinase; 28.3 59 0.0013 25.7 2.8 17 65-81 2-18 (246)
161 PF08338 DUF1731: Domain of un 28.2 15 0.00034 21.7 -0.4 11 129-139 28-38 (48)
162 PF01548 DEDD_Tnp_IS110: Trans 26.8 1.5E+02 0.0032 20.6 4.4 45 65-115 1-45 (144)
163 cd00012 ACTIN Actin; An ubiqui 26.7 1.2E+02 0.0026 24.8 4.5 37 44-82 125-162 (371)
164 PRK11678 putative chaperone; P 26.5 56 0.0012 28.2 2.5 17 65-81 2-18 (450)
165 KOG0102|consensus 26.3 1.1E+02 0.0023 27.8 4.1 32 59-90 208-239 (640)
166 PRK13930 rod shape-determining 25.9 56 0.0012 26.3 2.3 14 66-79 11-24 (335)
167 PF02933 CDC48_2: Cell divisio 25.9 1.6E+02 0.0035 17.9 4.8 26 62-87 21-47 (64)
168 COG4820 EutJ Ethanolamine util 24.3 2.2E+02 0.0047 22.8 5.2 25 58-82 24-48 (277)
169 PF04534 Herpes_UL56: Herpesvi 23.9 56 0.0012 25.0 1.8 27 44-72 18-44 (198)
170 PF09159 Ydc2-catalyt: Mitocho 23.8 84 0.0018 25.3 2.9 18 65-82 1-18 (274)
171 PF09373 PMBR: Pseudomurein-bi 23.7 1.3E+02 0.0029 16.1 3.1 19 15-33 4-22 (33)
172 KOG0103|consensus 23.7 1.9E+02 0.0042 26.8 5.4 62 54-116 186-248 (727)
173 PF02816 Alpha_kinase: Alpha-k 23.4 1.9E+02 0.0042 21.1 4.7 44 18-61 45-89 (189)
174 PF10296 DUF2404: Putative int 23.4 2.2E+02 0.0048 18.6 4.5 45 23-82 16-60 (91)
175 PRK01433 hscA chaperone protei 23.2 79 0.0017 28.3 2.9 19 63-81 19-37 (595)
176 TIGR03192 benz_CoA_bzdQ benzoy 22.9 82 0.0018 25.9 2.7 18 64-81 33-50 (293)
177 PRK13928 rod shape-determining 21.9 1.2E+02 0.0026 24.6 3.5 19 65-83 149-167 (336)
178 COG2967 ApaG Uncharacterized p 21.0 91 0.002 22.4 2.3 26 55-80 90-115 (126)
179 PF06723 MreB_Mbl: MreB/Mbl pr 21.0 3.6E+02 0.0078 22.3 6.2 48 45-96 123-175 (326)
180 cd07394 MPP_Vps29 Homo sapiens 20.9 3.3E+02 0.0072 20.0 5.5 29 62-90 146-174 (178)
181 PF00022 Actin: Actin; InterP 20.9 1E+02 0.0022 25.2 3.0 16 65-80 6-21 (393)
182 PF00022 Actin: Actin; InterP 20.7 1.4E+02 0.0031 24.4 3.8 36 44-81 124-160 (393)
183 cd00897 UGPase_euk Eukaryotic 20.7 1.9E+02 0.0042 23.7 4.5 58 76-139 3-62 (300)
184 KOG1405|consensus 20.6 80 0.0017 27.3 2.2 56 16-80 384-439 (484)
185 cd02988 Phd_like_VIAF Phosduci 20.2 32 0.00068 26.2 -0.2 31 45-76 149-180 (192)
186 TIGR02373 photo_yellow photoac 20.1 1.9E+02 0.0042 20.8 3.8 36 105-140 58-99 (124)
No 1
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=100.00 E-value=1.5e-49 Score=307.45 Aligned_cols=140 Identities=45% Similarity=0.890 Sum_probs=125.4
Q ss_pred hHHHHHHhcccCccCHHHHHHHHHHHHHHHHHhhccCCCCCcccceeccccccCCCCCccccEEEEecCCceEEEEEEEe
Q psy6344 3 VRGKIREHCKDLVLSDEQLREVMSKLLLAINKGLDKNTNKEAVVKCFPTYVQDLPNGKEKGKFLALDLGGTNFRVLIIYL 82 (142)
Q Consensus 3 ~~~~~~~~~~~f~l~~~~L~~i~~~f~~em~~gL~~~~~~~s~~~Mlps~v~~~P~G~E~G~fLalDlGGTnlRv~~V~L 82 (142)
..+++++++++|.+|+++|++|+++|++||++||+++++..+.++||||||+.+|+|+|+|+|||||+|||||||++|+|
T Consensus 3 ~~~~v~~~~~~f~~s~~~L~~i~~~f~~em~~gL~~~~~~~~~l~MlPs~v~~~P~G~E~G~~LalDlGGTnlRv~~V~L 82 (206)
T PF00349_consen 3 LQQAVQKLLQQFTLSDEQLQEISDRFLEEMEKGLAKSSSSMSSLKMLPSYVTSLPTGNEKGDFLALDLGGTNLRVALVEL 82 (206)
T ss_dssp HHHHHHHHHGGGS--HHHHHHHHHHHHHHHHHHHSTTTGCG-SS-EEEESEESSTTSTTEEEEEEEEESSSSEEEEEEEE
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHccCCCCceeeeccccccccCCCCCCCceEEEEeecCcEEEEEEEEE
Confidence 35789999999999999999999999999999999876444569999999999999999999999999999999999999
Q ss_pred -cCceEEEEEEEeecCCCccCCChhHHHHHHHHHHHHHhhhcCC--CCCccceEEEEecccCC
Q psy6344 83 -EENHFKMESKVYSIPQDIMTGSGTQLFDHIAECLADFMRDNDV--ASERLPLGFTFSFPLTQ 142 (142)
Q Consensus 83 -g~~~~~~~~~~~~ip~~~~~~~~~~lFd~ia~~i~~fl~~~~~--~~~~l~lGfTFSFP~~Q 142 (142)
|++.+++.+++|.||++++.+++++||||||+||++|+++++. .++++++||||||||+|
T Consensus 83 ~g~~~~~~~~~~~~ip~~~~~~~~~~lFd~ia~~i~~f~~~~~~~~~~~~l~lGfTFSFP~~q 145 (206)
T PF00349_consen 83 SGNGKVEIEQEKYKIPEELMNGSGEELFDFIADCIAEFLKEHNLESRDEKLPLGFTFSFPVEQ 145 (206)
T ss_dssp ESSSEEEEEEEEEE--HHHHTSBHHHHHHHHHHHHHHHHHHTTTTSTTSEEEEEEEEESSEEE
T ss_pred cCCCCceeeeccccCChHHhcCCcccHHHHHHHHHHHHHHHhcccccccccceEEEEEEEEEe
Confidence 8778889999999999999999999999999999999998765 57899999999999987
No 2
>PLN02914 hexokinase
Probab=100.00 E-value=1.8e-45 Score=313.94 Aligned_cols=138 Identities=39% Similarity=0.600 Sum_probs=126.3
Q ss_pred hHHHHHHhcccCccCHHHHHHHHHHHHHHHHHhhccCCCCCcccceeccccccCCCCCccccEEEEecCCceEEEEEEEe
Q psy6344 3 VRGKIREHCKDLVLSDEQLREVMSKLLLAINKGLDKNTNKEAVVKCFPTYVQDLPNGKEKGKFLALDLGGTNFRVLIIYL 82 (142)
Q Consensus 3 ~~~~~~~~~~~f~l~~~~L~~i~~~f~~em~~gL~~~~~~~s~~~Mlps~v~~~P~G~E~G~fLalDlGGTnlRv~~V~L 82 (142)
..+.++++.++|.++.+.|++|+++|.+||++||++++ +|+++||||||..+|+|+|+|+|||||+|||||||++|+|
T Consensus 37 ~~~~~~~~~~~f~~~~~~L~~i~~~f~~em~~GL~~~~--~s~l~MlpTyv~~lPtG~E~G~fLAlDlGGTNfRV~~V~L 114 (490)
T PLN02914 37 VAPILTKLQKDCATPLPVLRHVADAMAADMRAGLAVDG--GGDLKMILSYVDSLPSGNEKGLFYALDLGGTNFRVLRVQL 114 (490)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhccCC--CCCcceeccccCCCCCCCeeeEEEEEecCCceEEEEEEEe
Confidence 46788999999999999999999999999999999752 4899999999999999999999999999999999999999
Q ss_pred -cCc--eEEEEEEEeecCCCccCCChhHHHHHHHHHHHHHhhhcCC-----CCCccceEEEEecccCC
Q psy6344 83 -EEN--HFKMESKVYSIPQDIMTGSGTQLFDHIAECLADFMRDNDV-----ASERLPLGFTFSFPLTQ 142 (142)
Q Consensus 83 -g~~--~~~~~~~~~~ip~~~~~~~~~~lFd~ia~~i~~fl~~~~~-----~~~~l~lGfTFSFP~~Q 142 (142)
|++ .+++.+++|.||++++.+++++||||||+||++|+++++. .++.+||||||||||+|
T Consensus 115 ~g~~~~~~~~~~~~~~ip~~l~~gt~~eLFdfIA~~i~~fl~~~~~~~~~~~~~~l~LGfTFSFP~~Q 182 (490)
T PLN02914 115 GGKDERVIATEFEQVSIPQELMFGTSEELFDFIASGLANFVAKEGGKFHLPEGRKREIGFTFSFPVKQ 182 (490)
T ss_pred cCCCCceeeeeEEEecCChhhccCCHHHHHHHHHHHHHHHHHhccccccCCccccccceeeEeeeeec
Confidence 643 5778899999999999999999999999999999988652 23579999999999998
No 3
>PLN02405 hexokinase
Probab=100.00 E-value=2.2e-45 Score=313.96 Aligned_cols=138 Identities=41% Similarity=0.642 Sum_probs=125.7
Q ss_pred hHHHHHHhcccCccCHHHHHHHHHHHHHHHHHhhccCCCCCcccceeccccccCCCCCccccEEEEecCCceEEEEEEEe
Q psy6344 3 VRGKIREHCKDLVLSDEQLREVMSKLLLAINKGLDKNTNKEAVVKCFPTYVQDLPNGKEKGKFLALDLGGTNFRVLIIYL 82 (142)
Q Consensus 3 ~~~~~~~~~~~f~l~~~~L~~i~~~f~~em~~gL~~~~~~~s~~~Mlps~v~~~P~G~E~G~fLalDlGGTnlRv~~V~L 82 (142)
....++++.++|.+|.++|++|+++|.+||++||++++ +|+++||||||+.+|+|+|+|+|||||||||||||++|+|
T Consensus 37 ~~~~l~~~~~~f~~~~~~L~~v~~~f~~em~~GL~~~~--~s~l~MlpSyv~~lPtG~E~G~flAlDlGGTNfRV~~V~L 114 (497)
T PLN02405 37 AMEILKEFEEDCATPIGKLRQVADAMTVEMHAGLASEG--GSKLKMLISYVDNLPSGDEKGLFYALDLGGTNFRVLRVLL 114 (497)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhccCC--CCCcceeccccccCCCCCcceeEEEEecCCceEEEEEEEE
Confidence 35668899999999999999999999999999999753 4899999999999999999999999999999999999999
Q ss_pred -cCc--eEEEEEEEeecCCCccCCChhHHHHHHHHHHHHHhhhcCC-----CCCccceEEEEecccCC
Q psy6344 83 -EEN--HFKMESKVYSIPQDIMTGSGTQLFDHIAECLADFMRDNDV-----ASERLPLGFTFSFPLTQ 142 (142)
Q Consensus 83 -g~~--~~~~~~~~~~ip~~~~~~~~~~lFd~ia~~i~~fl~~~~~-----~~~~l~lGfTFSFP~~Q 142 (142)
|++ .+++.+++|.||+++|.+++++||||||+||++|+++++. .++.+||||||||||+|
T Consensus 115 ~g~~~~~~~~~~~~~~ip~~~~~gt~~~LFdfIA~~i~~fl~~~~~~~~~~~~~~l~LGfTFSFPv~Q 182 (497)
T PLN02405 115 GGKDGRVVKQEFEEVSIPPHLMTGSSDALFDFIAAALAKFVATEGEDFHLPPGRQRELGFTFSFPVKQ 182 (497)
T ss_pred cCCCCceeEEEEEEeecChhhccCCHHHHHHHHHHHHHHHHHhcccccccCcccccccceeEeeeecc
Confidence 643 5677889999999999999999999999999999988653 23579999999999998
No 4
>PLN02596 hexokinase-like
Probab=100.00 E-value=2.5e-45 Score=313.00 Aligned_cols=137 Identities=30% Similarity=0.507 Sum_probs=124.7
Q ss_pred HHHHHHhcccCccCHHHHHHHHHHHHHHHHHhhccCCCCCcccceeccccccCCCCCccccEEEEecCCceEEEEEEEe-
Q psy6344 4 RGKIREHCKDLVLSDEQLREVMSKLLLAINKGLDKNTNKEAVVKCFPTYVQDLPNGKEKGKFLALDLGGTNFRVLIIYL- 82 (142)
Q Consensus 4 ~~~~~~~~~~f~l~~~~L~~i~~~f~~em~~gL~~~~~~~s~~~Mlps~v~~~P~G~E~G~fLalDlGGTnlRv~~V~L- 82 (142)
...+++++++|.++.++|++|+++|.+||++||+++ ..|+++||||||+++|+|+|+|+|||||+|||||||++|+|
T Consensus 39 ~~~l~~~~~~f~~~~~~L~~i~~~f~~em~~GL~~~--~~s~l~MlpTyv~~lPtG~E~G~yLAlDlGGTNfRV~~V~L~ 116 (490)
T PLN02596 39 QRILRKFARECATPVSKLWEVADALVSDMTASLTAE--ETTTLNMLVSYVASLPSGDEKGLYYGLNLRGSNFLLLRARLG 116 (490)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhccC--CCCCCceecccCCCCCCCCcceEEEEEeeCCceEEEEEEEEc
Confidence 456889999999999999999999999999999874 24899999999999999999999999999999999999999
Q ss_pred cCc--eEEEEEEEeecCCCccCCChhHHHHHHHHHHHHHhhhcCCC-----CCccceEEEEecccCC
Q psy6344 83 EEN--HFKMESKVYSIPQDIMTGSGTQLFDHIAECLADFMRDNDVA-----SERLPLGFTFSFPLTQ 142 (142)
Q Consensus 83 g~~--~~~~~~~~~~ip~~~~~~~~~~lFd~ia~~i~~fl~~~~~~-----~~~l~lGfTFSFP~~Q 142 (142)
|++ ..++.+++|.||++++.+++++||||||+||++|+++++.. ++.+||||||||||+|
T Consensus 117 g~~~~~~~~~~~~~~Ip~~l~~~t~~eLFd~IA~~i~~fl~~~~~~~~~~~~~~l~lGfTFSFP~~Q 183 (490)
T PLN02596 117 GKNEPISDLYREEISIPSNVLNGTSQELFDYIALELAKFVAEHPGDEADTPERVKKLGFTVSYPVDQ 183 (490)
T ss_pred CCCCceEEEEEEEecCChHhhcCCHHHHHHHHHHHHHHHHHhhccccccCcccccccceEEeeeeee
Confidence 653 36778899999999999999999999999999999886532 2569999999999998
No 5
>PLN02362 hexokinase
Probab=100.00 E-value=3.4e-45 Score=313.56 Aligned_cols=138 Identities=37% Similarity=0.614 Sum_probs=124.7
Q ss_pred hHHHHHHhcccCccCHHHHHHHHHHHHHHHHHhhccCCCCCcccceeccccccCCCCCccccEEEEecCCceEEEEEEEe
Q psy6344 3 VRGKIREHCKDLVLSDEQLREVMSKLLLAINKGLDKNTNKEAVVKCFPTYVQDLPNGKEKGKFLALDLGGTNFRVLIIYL 82 (142)
Q Consensus 3 ~~~~~~~~~~~f~l~~~~L~~i~~~f~~em~~gL~~~~~~~s~~~Mlps~v~~~P~G~E~G~fLalDlGGTnlRv~~V~L 82 (142)
..+.++++.++|.++.++|++|+++|.+||++||++++ +|+++||||||+++|+|+|+|+|||||||||||||++|+|
T Consensus 37 ~~~~l~~~~~~f~~~~~~L~~v~~~f~~em~~GL~~~~--~s~l~MlPTyv~~lPtG~E~G~fLAlDlGGTNfRV~~V~L 114 (509)
T PLN02362 37 VVGVLKELEEACETPVGRLRQVVDAMAVEMHAGLASEG--GSKLKMLLTFVDDLPTGSEIGTYYALDLGGTNFRVLRVQL 114 (509)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhccCC--CCCCceecCccCCCCCCCcceeEEEEecCCceEEEEEEEe
Confidence 46678999999999999999999999999999999752 4899999999999999999999999999999999999999
Q ss_pred -cCceEEE--EEEEeecCCCccCCChhHHHHHHHHHHHHHhhhcCCC-----CCccceEEEEecccCC
Q psy6344 83 -EENHFKM--ESKVYSIPQDIMTGSGTQLFDHIAECLADFMRDNDVA-----SERLPLGFTFSFPLTQ 142 (142)
Q Consensus 83 -g~~~~~~--~~~~~~ip~~~~~~~~~~lFd~ia~~i~~fl~~~~~~-----~~~l~lGfTFSFP~~Q 142 (142)
|++.+.+ .+++|+||++++.+++++||||||+||++|+++++.. ++.++|||||||||+|
T Consensus 115 ~g~~~~~~~~~~~~~~Ip~~l~~~~~~eLFd~IA~~i~~fl~~~~~~~~~~~~~~l~LGfTFSFPv~Q 182 (509)
T PLN02362 115 GGQRSSILSQDVERHPIPQHLMNSTSEVLFDFIASSLKQFVEKEENGSEFSQVRRRELGFTFSFPVKQ 182 (509)
T ss_pred cCCCcceeeceeEEEecChhhccCCHHHHHHHHHHHHHHHHHhcCccccccccccccceeEEeeeecc
Confidence 6655554 3478999999999999999999999999999887532 2569999999999998
No 6
>PTZ00107 hexokinase; Provisional
Probab=100.00 E-value=9.8e-45 Score=308.29 Aligned_cols=140 Identities=35% Similarity=0.669 Sum_probs=127.7
Q ss_pred hHHHHHHhcccCccCHHHHHHHHHHHHHHHHHhhccC-CC------CCcccceeccccccCCCCCccccEEEEecCCceE
Q psy6344 3 VRGKIREHCKDLVLSDEQLREVMSKLLLAINKGLDKN-TN------KEAVVKCFPTYVQDLPNGKEKGKFLALDLGGTNF 75 (142)
Q Consensus 3 ~~~~~~~~~~~f~l~~~~L~~i~~~f~~em~~gL~~~-~~------~~s~~~Mlps~v~~~P~G~E~G~fLalDlGGTnl 75 (142)
..+++++++++|.++.++|++|+++|.+||++||+++ +| .+|+++||||||+.+|+|+|+|+|||||||||||
T Consensus 7 ~~~~~~~~~~~f~~~~~~L~~i~~~f~~em~~GL~~~~~~~~~~~~~~s~l~Mlps~v~~lPtG~E~G~fLAlDlGGTN~ 86 (464)
T PTZ00107 7 QRVRLASLVNQFTMSKEKLKELVDYFLYELVEGLEAHRRHRNLWIPNECSFKMLDSCVYNLPTGKEKGVYYAIDFGGTNF 86 (464)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCccccccccCCCCCCCccceEEEEecCCceE
Confidence 3567899999999999999999999999999999976 11 2589999999999999999999999999999999
Q ss_pred EEEEEEe-cCceEEEEEEEeecCCCccCC---------ChhHHHHHHHHHHHHHhhhcC-C--CCCccceEEEEecccCC
Q psy6344 76 RVLIIYL-EENHFKMESKVYSIPQDIMTG---------SGTQLFDHIAECLADFMRDND-V--ASERLPLGFTFSFPLTQ 142 (142)
Q Consensus 76 Rv~~V~L-g~~~~~~~~~~~~ip~~~~~~---------~~~~lFd~ia~~i~~fl~~~~-~--~~~~l~lGfTFSFP~~Q 142 (142)
|||+|+| |++.+++.+++|.||+.++.+ ++++||||||+||++|+++++ . .++.+||||||||||+|
T Consensus 87 RV~~V~L~g~~~~~~~~~~~~ip~~~~~~~~~~~~k~~t~~~lFd~IA~~i~~fl~~~~~~~~~~~~l~lGfTFSFP~~Q 166 (464)
T PTZ00107 87 RAVRVSLRGGGKMERTQSKFSLPKSALLGEKGLLDKKATATDLFDHIAKSIKKMMEENGDPEDLNKPVPVGFTFSFPCTQ 166 (464)
T ss_pred EEEEEEeCCCCceeeEEEEEeCCHHHhccccccccccCCHHHHHHHHHHHHHHHHHhccccccccccccceeEEeeeeec
Confidence 9999999 777888899999999999988 899999999999999998875 2 23579999999999998
No 7
>KOG1369|consensus
Probab=100.00 E-value=3.6e-41 Score=285.08 Aligned_cols=140 Identities=52% Similarity=0.885 Sum_probs=127.0
Q ss_pred chHHHHHHhcccCccCHHHHHHHHHHHHHHHHHhhccCCCCCcccceeccccccCCCCCccccEEEEecCCceEEEEEEE
Q psy6344 2 SVRGKIREHCKDLVLSDEQLREVMSKLLLAINKGLDKNTNKEAVVKCFPTYVQDLPNGKEKGKFLALDLGGTNFRVLIIY 81 (142)
Q Consensus 2 ~~~~~~~~~~~~f~l~~~~L~~i~~~f~~em~~gL~~~~~~~s~~~Mlps~v~~~P~G~E~G~fLalDlGGTnlRv~~V~ 81 (142)
++++.++++++.|.++.++|++|+++|.+||.+||++..+. +.++|+||||..+|+|+|+|.|||||||||||||++|+
T Consensus 26 ~~~~~l~~~~~~f~l~~~~L~~v~~~~~~em~~gL~~~~~g-~~~~mlpt~V~~lP~G~E~G~~lalDLGGTn~Rv~~v~ 104 (474)
T KOG1369|consen 26 AVSRQLEELLALFQLPDEQLREVVDAFREEMERGLAKKTHG-SAVKMLPTYVPDLPDGTEKGKFLALDLGGTNFRVLLVK 104 (474)
T ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCC-cccccchhhcccCCCCCcCCCEEEEecCCCceEEEEEE
Confidence 45778899999999999999999999999999999965532 34999999999999999999999999999999999999
Q ss_pred e-cCc-eEEEEEEEeecCCCccCCChhHHHHHHHHHHHHHhhhcCCCCCc-cceEEEEecccCC
Q psy6344 82 L-EEN-HFKMESKVYSIPQDIMTGSGTQLFDHIAECLADFMRDNDVASER-LPLGFTFSFPLTQ 142 (142)
Q Consensus 82 L-g~~-~~~~~~~~~~ip~~~~~~~~~~lFd~ia~~i~~fl~~~~~~~~~-l~lGfTFSFP~~Q 142 (142)
| |++ .+.+..++|.||.++|.+++++||||||+|+++|+.+++..+.+ +|+||||||||+|
T Consensus 105 L~g~~~~~~~~~~~~~ip~~~m~gt~~~Lfd~Ia~~l~~F~~~~~~~~~~~l~lgFTFSfP~~Q 168 (474)
T KOG1369|consen 105 LGGGRTSVRMYNKIYAIPEEIMQGTGEELFDFIARCLADFLDKMGLKGASKLPLGFTFSFPCRQ 168 (474)
T ss_pred ecCCcccceeeeeeEecCHHHHcCchHHHHHHHHHHHHHHHHHhccccccccccceEEeeeeee
Confidence 9 555 45667789999999999999999999999999999998765555 9999999999998
No 8
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.9e-37 Score=255.88 Aligned_cols=139 Identities=35% Similarity=0.677 Sum_probs=127.8
Q ss_pred chHHHHHHhcccCccCHHHHHHHHHHHHHHHHHhhccCCCCCcccceeccccccCCCCCccccEEEEecCCceEEEEEEE
Q psy6344 2 SVRGKIREHCKDLVLSDEQLREVMSKLLLAINKGLDKNTNKEAVVKCFPTYVQDLPNGKEKGKFLALDLGGTNFRVLIIY 81 (142)
Q Consensus 2 ~~~~~~~~~~~~f~l~~~~L~~i~~~f~~em~~gL~~~~~~~s~~~Mlps~v~~~P~G~E~G~fLalDlGGTnlRv~~V~ 81 (142)
.+...+++++++|.++.++|.++.+.|.+||++||+..+ ++.++|+|+||...|+|+|+|.|||||+||||||||+|+
T Consensus 16 ~l~~~~~~~~~~~~~p~e~l~~v~~~Fieel~kgL~~~~--G~~l~MIP~~v~~~p~g~e~g~~LaiD~GGTnlRvc~V~ 93 (466)
T COG5026 16 ALEQAVEELVESFTVPTEDLREVVKAFIEELEKGLQPKS--GDFLPMIPTWVAPLPTGNESGSVLAIDLGGTNLRVCLVV 93 (466)
T ss_pred HHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHhccCCCC--CCccccccccccCCCCCCCCCCEEEEecCCceEEEEEEE
Confidence 467789999999999999999999999999999999432 244999999999999999999999999999999999999
Q ss_pred e-cCceEEEEEEEeecCCCccCC-ChhHHHHHHHHHHHHHhhhcCCC--CCccceEEEEecccCC
Q psy6344 82 L-EENHFKMESKVYSIPQDIMTG-SGTQLFDHIAECLADFMRDNDVA--SERLPLGFTFSFPLTQ 142 (142)
Q Consensus 82 L-g~~~~~~~~~~~~ip~~~~~~-~~~~lFd~ia~~i~~fl~~~~~~--~~~l~lGfTFSFP~~Q 142 (142)
| |++++.+.+.++.+|.+.... +.++||++||++++.|+++++.. ..++++|||||||++|
T Consensus 94 l~g~gt~~~~~sks~lp~e~~~~~~~~~l~~~iadrl~~fi~~~~~~~~~~~l~~gfTFSYP~~q 158 (466)
T COG5026 94 LGGDGTFDIEQSKSFLPVECRDSESRDELFGFIADRLAAFIKEQHPSGYGSKLPIGFTFSYPLNQ 158 (466)
T ss_pred eCCCCCcccccCcccCchhhccCCChHHHHHHHHHHHHHHHHHhCchhccCcceeeEEEeccccc
Confidence 9 899999999999999999977 78999999999999999987752 4689999999999998
No 9
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=97.27 E-value=0.0025 Score=49.67 Aligned_cols=59 Identities=17% Similarity=0.419 Sum_probs=41.6
Q ss_pred EEEEecCCceEEEEEEEecCceEEEEEEEeec--C-CCccCCChhHHHHHHHHHHHHHhhhc
Q psy6344 65 FLALDLGGTNFRVLIIYLEENHFKMESKVYSI--P-QDIMTGSGTQLFDHIAECLADFMRDN 123 (142)
Q Consensus 65 fLalDlGGTnlRv~~V~Lg~~~~~~~~~~~~i--p-~~~~~~~~~~lFd~ia~~i~~fl~~~ 123 (142)
||+||+|.|+.|+++++-.++.+...++.+.. | +....-+.+++++.+.+++.+.++..
T Consensus 2 ~lgiDiGTts~K~~l~d~~g~iv~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~ 63 (245)
T PF00370_consen 2 YLGIDIGTTSVKAVLFDEDGKIVASASRPYPYYTPEPGWAEQDPDEIWEAICEALKELLSQA 63 (245)
T ss_dssp EEEEEECSSEEEEEEEETTSCEEEEEEEEETEBCSSTTEEEE-HHHHHHHHHHHHHHHHHHC
T ss_pred EEEEEEcccceEEEEEeCCCCEEEEEEEeeeeccccccccccChHHHHHHHHHHHHHHHhhc
Confidence 79999999999999999633344344444433 2 22223467999999999999988764
No 10
>PRK09698 D-allose kinase; Provisional
Probab=97.01 E-value=0.0054 Score=49.18 Aligned_cols=68 Identities=21% Similarity=0.390 Sum_probs=44.9
Q ss_pred cccEEEEecCCceEEEEEEEecCceEEEEEEEeecCCCccCCChhHHHHHHHHHHHHHhhhcCCCCCccceEEEEecc
Q psy6344 62 KGKFLALDLGGTNFRVLIIYLEENHFKMESKVYSIPQDIMTGSGTQLFDHIAECLADFMRDNDVASERLPLGFTFSFP 139 (142)
Q Consensus 62 ~G~fLalDlGGTnlRv~~V~Lg~~~~~~~~~~~~ip~~~~~~~~~~lFd~ia~~i~~fl~~~~~~~~~l~lGfTFSFP 139 (142)
.+.++++|+|||++|++++.+.+.. +.+..+..|.. .+.+ .++.+++.|.+++++.+ . -.+|+.+++|
T Consensus 3 ~~~~lgidig~t~i~~~l~d~~g~i--~~~~~~~~~~~---~~~~-~~~~l~~~i~~~~~~~~--~--~i~gigia~p 70 (302)
T PRK09698 3 KNVVLGIDMGGTHIRFCLVDAEGEI--LHCEKKRTAEV---IAPD-LVSGLGEMIDEYLRRFN--A--RCHGIVMGFP 70 (302)
T ss_pred ccEEEEEEcCCcEEEEEEEcCCCCE--EEEEEeCCccc---cchH-HHHHHHHHHHHHHHHcC--C--CeeEEEEeCC
Confidence 3568999999999999999993222 23444555432 2233 49999999999987643 2 2345555555
No 11
>PRK13311 N-acetyl-D-glucosamine kinase; Provisional
Probab=96.94 E-value=0.0058 Score=48.19 Aligned_cols=51 Identities=16% Similarity=0.249 Sum_probs=36.7
Q ss_pred EEEEecCCceEEEEEEEecCceEEEEEEEeecCCCccCCChhHHHHHHHHHHHHHhh
Q psy6344 65 FLALDLGGTNFRVLIIYLEENHFKMESKVYSIPQDIMTGSGTQLFDHIAECLADFMR 121 (142)
Q Consensus 65 fLalDlGGTnlRv~~V~Lg~~~~~~~~~~~~ip~~~~~~~~~~lFd~ia~~i~~fl~ 121 (142)
|+++|+|||++|++++++.+.. +.++.++.|. .+.+++.+.+++.+.++..
T Consensus 2 ~lgidiggt~i~~~l~d~~g~i--~~~~~~~~~~----~~~~~~~~~i~~~i~~~~~ 52 (256)
T PRK13311 2 YYGFDMGGTKIELGVFDENLQR--IWHKRVPTPR----EDYPQLLQILRDLTEEADT 52 (256)
T ss_pred EEEEEECCCcEEEEEECCCCCE--EEEEEecCCC----cCHHHHHHHHHHHHHHHHh
Confidence 7999999999999999993222 2344455542 2357889999888887643
No 12
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=96.90 E-value=0.0066 Score=40.56 Aligned_cols=48 Identities=10% Similarity=0.053 Sum_probs=30.2
Q ss_pred cEEEEecCCceEEEEEEEecCceEEEEEEEeecCCCccCCChhHHHHHHHHHHHH
Q psy6344 64 KFLALDLGGTNFRVLIIYLEENHFKMESKVYSIPQDIMTGSGTQLFDHIAECLAD 118 (142)
Q Consensus 64 ~fLalDlGGTnlRv~~V~Lg~~~~~~~~~~~~ip~~~~~~~~~~lFd~ia~~i~~ 118 (142)
.+|+||+|||+.+++++.-.+.... ......+. +..++++.+++.+.+
T Consensus 2 ~ilgiD~Ggt~i~~a~~d~~g~~~~--~~~~~~~~-----~~~~~~~~l~~~i~~ 49 (99)
T smart00732 2 RVLGLDPGRKGIGVAVVDETGKLAD--PLEVIPRT-----NKEADAARLKKLIKK 49 (99)
T ss_pred cEEEEccCCCeEEEEEECCCCCEec--CEEEEEec-----CcchHHHHHHHHHHH
Confidence 4899999999999999976222111 11111111 245778888777766
No 13
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=96.88 E-value=0.0093 Score=48.10 Aligned_cols=71 Identities=20% Similarity=0.351 Sum_probs=48.8
Q ss_pred ccccEEEEecCCceEEEEEEEe-cCceEEEEEEEeecCCCccCCChhHHHHHHHHHHHHHhhhcCCCCCccceEEEEecc
Q psy6344 61 EKGKFLALDLGGTNFRVLIIYL-EENHFKMESKVYSIPQDIMTGSGTQLFDHIAECLADFMRDNDVASERLPLGFTFSFP 139 (142)
Q Consensus 61 E~G~fLalDlGGTnlRv~~V~L-g~~~~~~~~~~~~ip~~~~~~~~~~lFd~ia~~i~~fl~~~~~~~~~l~lGfTFSFP 139 (142)
+...+++||+|||+++++++.+ |+ . +..+....|.... .+++.+-|++.|.+++...+ ...-.+|+.++-|
T Consensus 4 ~~~~~lgidIggt~i~~~l~d~~g~-~--l~~~~~~~~~~~~---~~~~~~~i~~~i~~~~~~~~--~~~~~iGIgi~~p 75 (314)
T COG1940 4 EAMTVLGIDIGGTKIKVALVDLDGE-I--LLRERIPTPTPDP---EEAILEAILALVAELLKQAQ--GRVAIIGIGIPGP 75 (314)
T ss_pred cCcEEEEEEecCCEEEEEEECCCCc-E--EEEEEEecCCCCc---hhHHHHHHHHHHHHHHHhcC--CcCceEEEEeccc
Confidence 3457899999999999999999 44 2 2444455554322 25888888888888887653 2234566666655
No 14
>PRK12408 glucokinase; Provisional
Probab=96.79 E-value=0.0026 Score=52.48 Aligned_cols=25 Identities=32% Similarity=0.559 Sum_probs=20.7
Q ss_pred CCCccc-cEEEEecCCceEEEEEEEe
Q psy6344 58 NGKEKG-KFLALDLGGTNFRVLIIYL 82 (142)
Q Consensus 58 ~G~E~G-~fLalDlGGTnlRv~~V~L 82 (142)
+|-|++ .||++|+||||.|+++|+-
T Consensus 10 ~~~~~~~~~L~~DIGGT~i~~al~d~ 35 (336)
T PRK12408 10 VAVPRPESFVAADVGGTHVRVALVCA 35 (336)
T ss_pred ccCcccccEEEEEcChhhhheeEEec
Confidence 444555 4999999999999999986
No 15
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=96.79 E-value=0.0087 Score=51.69 Aligned_cols=59 Identities=12% Similarity=0.263 Sum_probs=40.3
Q ss_pred EEEEecCCceEEEEEEEecCceEEEEEEEee--cCC-CccCCChhHHHHHHHHHHHHHhhhc
Q psy6344 65 FLALDLGGTNFRVLIIYLEENHFKMESKVYS--IPQ-DIMTGSGTQLFDHIAECLADFMRDN 123 (142)
Q Consensus 65 fLalDlGGTnlRv~~V~Lg~~~~~~~~~~~~--ip~-~~~~~~~~~lFd~ia~~i~~fl~~~ 123 (142)
+|+||+|+|+.|++++...++.....+..|+ .|. .-...+.+++++.+.+++.+.+++.
T Consensus 2 ~lgiDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~ 63 (505)
T TIGR01314 2 MIGVDIGTTSTKAVLFEENGKIVAKSSIGYPLYTPASGMAEENPEEIFEAVLVTIREVSINL 63 (505)
T ss_pred EEEEeccccceEEEEEcCCCCEEEEEEeecccccCCCCCeeeCHHHHHHHHHHHHHHHHHhC
Confidence 6899999999999999973333333333333 221 1223457889999999999987654
No 16
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=96.63 E-value=0.012 Score=47.34 Aligned_cols=66 Identities=17% Similarity=0.287 Sum_probs=45.2
Q ss_pred EEEecCCceEEEEEEEecCceEEEEEEEeecCCCccCCChhHHHHHHHHHHHHHhhhcCCCCCccceEEEEecc
Q psy6344 66 LALDLGGTNFRVLIIYLEENHFKMESKVYSIPQDIMTGSGTQLFDHIAECLADFMRDNDVASERLPLGFTFSFP 139 (142)
Q Consensus 66 LalDlGGTnlRv~~V~Lg~~~~~~~~~~~~ip~~~~~~~~~~lFd~ia~~i~~fl~~~~~~~~~l~lGfTFSFP 139 (142)
+++|+|||++|++++++.+.. +.+..+..+ .+.+++.+.|.+.|.+++++.+... .-.+|..++.|
T Consensus 1 lgidig~t~~~~~l~d~~g~i--~~~~~~~~~-----~~~~~~~~~l~~~i~~~~~~~~~~~-~~i~gIgva~p 66 (318)
T TIGR00744 1 IGVDIGGTTIKLGVVDEEGNI--LSKWKVPTD-----TTPETIVDAIASAVDSFIQHIAKVG-HEIVAIGIGAP 66 (318)
T ss_pred CEEEeCCCEEEEEEECCCCCE--EEEEEeCCC-----CCHHHHHHHHHHHHHHHHHhcCCCc-cceEEEEEecc
Confidence 589999999999999993222 223334333 1368899999999999998754322 22456666665
No 17
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=96.63 E-value=0.0076 Score=44.44 Aligned_cols=60 Identities=28% Similarity=0.530 Sum_probs=44.2
Q ss_pred EEecCCceEEEEEEEecCceEEEEEEEeecCCCccCCChhHHHHHHHHHHHHHhhhcCCCCCccceEEEEecc
Q psy6344 67 ALDLGGTNFRVLIIYLEENHFKMESKVYSIPQDIMTGSGTQLFDHIAECLADFMRDNDVASERLPLGFTFSFP 139 (142)
Q Consensus 67 alDlGGTnlRv~~V~Lg~~~~~~~~~~~~ip~~~~~~~~~~lFd~ia~~i~~fl~~~~~~~~~l~lGfTFSFP 139 (142)
+||+|+|++|++++.+.+.. +.++.+++| .+.+++.+.|++.+.+++.+.+. . |+.+|.|
T Consensus 1 gidig~~~i~~~l~d~~g~i--i~~~~~~~~-----~~~~~~~~~l~~~i~~~~~~~~~---~---gIgi~~p 60 (179)
T PF00480_consen 1 GIDIGGTSIRIALVDLDGEI--IYSESIPTP-----TSPEELLDALAELIERLLADYGR---S---GIGISVP 60 (179)
T ss_dssp EEEEESSEEEEEEEETTSCE--EEEEEEEHH-----SSHHHHHHHHHHHHHHHHHHHTC---E---EEEEEES
T ss_pred CEEECCCEEEEEEECCCCCE--EEEEEEECC-----CCHHHHHHHHHHHHHHHHhhccc---c---cEEEecc
Confidence 58999999999999993322 345566666 44689999999999998876531 1 5555555
No 18
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=96.49 E-value=0.017 Score=50.13 Aligned_cols=73 Identities=14% Similarity=0.213 Sum_probs=47.0
Q ss_pred cEEEEecCCceEEEEEEEecCceEEEEEEEeecC-----CCccCCChhHHHHHHHHHHHHHhhhcCCCCCccceEEEEe
Q psy6344 64 KFLALDLGGTNFRVLIIYLEENHFKMESKVYSIP-----QDIMTGSGTQLFDHIAECLADFMRDNDVASERLPLGFTFS 137 (142)
Q Consensus 64 ~fLalDlGGTnlRv~~V~Lg~~~~~~~~~~~~ip-----~~~~~~~~~~lFd~ia~~i~~fl~~~~~~~~~l~lGfTFS 137 (142)
-+|+||+|.|+.|+++++..++.....+..|..+ ..-..-+.+++++-+.++|.+.+++.+.... -..|+.+|
T Consensus 4 ~~lgID~GTts~Ka~l~d~~G~~l~~~~~~~~~~~~~~~~g~~Eqd~~~~w~~~~~~l~~~~~~~~~~~~-~I~aI~~s 81 (520)
T PRK10939 4 YLMALDAGTGSIRAVIFDLNGNQIAVGQAEWRHLAVPDVPGSMEFDLEKNWQLACQCIRQALQKAGIPAS-DIAAVSAT 81 (520)
T ss_pred EEEEEecCCCceEEEEECCCCCEEEEEeccccccCCCCCCCCeeECHHHHHHHHHHHHHHHHHHcCCCcc-ceEEEEEE
Confidence 3789999999999999998434444444444322 1122335789999999999998765432221 13455555
No 19
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=96.49 E-value=0.018 Score=46.25 Aligned_cols=51 Identities=20% Similarity=0.300 Sum_probs=37.3
Q ss_pred EEEEecCCceEEEEEEEe-cCceEEEEEEEeecCCCccCCChhHHHHHHHHHHHHHhhh
Q psy6344 65 FLALDLGGTNFRVLIIYL-EENHFKMESKVYSIPQDIMTGSGTQLFDHIAECLADFMRD 122 (142)
Q Consensus 65 fLalDlGGTnlRv~~V~L-g~~~~~~~~~~~~ip~~~~~~~~~~lFd~ia~~i~~fl~~ 122 (142)
++++|+|||++|++++.+ ++ . +.+..+..|. .+.+++.+.|++.+.++...
T Consensus 2 ~lgidig~t~i~~~l~d~~g~-i--~~~~~~~~~~----~~~~~~~~~i~~~i~~~~~~ 53 (303)
T PRK13310 2 YYGFDIGGTKIELGVFNEKLE-L--QWEERVPTPR----DSYDAFLDAVCELVAEADQR 53 (303)
T ss_pred eEEEEeCCCcEEEEEECCCCc-E--EEEEEecCCC----cCHHHHHHHHHHHHHHHHhh
Confidence 689999999999999999 43 2 2333444442 24678999999998887643
No 20
>PRK00292 glk glucokinase; Provisional
Probab=96.46 E-value=0.0093 Score=48.36 Aligned_cols=19 Identities=37% Similarity=0.410 Sum_probs=17.8
Q ss_pred cEEEEecCCceEEEEEEEe
Q psy6344 64 KFLALDLGGTNFRVLIIYL 82 (142)
Q Consensus 64 ~fLalDlGGTnlRv~~V~L 82 (142)
.+|++|+||||+|++++++
T Consensus 3 ~~lgiDIGgT~i~~~l~~~ 21 (316)
T PRK00292 3 PALVGDIGGTNARFALCDW 21 (316)
T ss_pred eEEEEEcCccceEEEEEec
Confidence 3799999999999999998
No 21
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=96.39 E-value=0.02 Score=49.26 Aligned_cols=60 Identities=18% Similarity=0.422 Sum_probs=41.3
Q ss_pred EEEEecCCceEEEEEEEecCceEEEEEEEeec--CCC-ccCCChhHHHHHHHHHHHHHhhhcC
Q psy6344 65 FLALDLGGTNFRVLIIYLEENHFKMESKVYSI--PQD-IMTGSGTQLFDHIAECLADFMRDND 124 (142)
Q Consensus 65 fLalDlGGTnlRv~~V~Lg~~~~~~~~~~~~i--p~~-~~~~~~~~lFd~ia~~i~~fl~~~~ 124 (142)
+|+||+|+|+.|++++...++.....+..+.. |.. ....+.+++++.+.+++.+.+.+.+
T Consensus 3 ~lgiDiGtt~iKa~l~d~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~~~~~~~~ 65 (493)
T TIGR01311 3 ILAIDQGTTSSRAIVFDKDGNIVAIHQKEFTQIFPKPGWVEHDPMEIWESVLSCIAEALAKAG 65 (493)
T ss_pred EEEEecCCCceEEEEECCCCCEEEEEeeeccccCCCCCcEeeCHHHHHHHHHHHHHHHHHHcC
Confidence 68999999999999999733444333433332 221 1122568899999999999887644
No 22
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=96.37 E-value=0.022 Score=49.68 Aligned_cols=60 Identities=12% Similarity=0.240 Sum_probs=43.8
Q ss_pred EEEEecCCceEEEEEEE-ecCceEEEEEEEee-------cC-------CCccCCChhHHHHHHHHHHHHHhhhcC
Q psy6344 65 FLALDLGGTNFRVLIIY-LEENHFKMESKVYS-------IP-------QDIMTGSGTQLFDHIAECLADFMRDND 124 (142)
Q Consensus 65 fLalDlGGTnlRv~~V~-Lg~~~~~~~~~~~~-------ip-------~~~~~~~~~~lFd~ia~~i~~fl~~~~ 124 (142)
+|+||+|.|+.|++++. ..++.+...++.|+ .| .....-+.+++++-+.+++.+.+++.+
T Consensus 3 ~lgiD~GTss~Ka~l~d~~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~~~~~~~~~~ 77 (536)
T TIGR01234 3 AIGVDFGTLSGRALAVDVATGEEIATAVEWYRHWVKGQFLPKTGAKLPNDQALQHPADYIEVLEAAIPTVLAELG 77 (536)
T ss_pred EEEEecCCCceEEEEEECCCCcEeeeeeeccccccccccCCCccccCCCCccccCHHHHHHHHHHHHHHHHHHcC
Confidence 78999999999999999 74444444555554 23 223344578999999999999876643
No 23
>PLN02295 glycerol kinase
Probab=96.30 E-value=0.026 Score=48.93 Aligned_cols=60 Identities=17% Similarity=0.303 Sum_probs=42.6
Q ss_pred EEEEecCCceEEEEEEEecCceEEEEEEEeec--CC-CccCCChhHHHHHHHHHHHHHhhhcC
Q psy6344 65 FLALDLGGTNFRVLIIYLEENHFKMESKVYSI--PQ-DIMTGSGTQLFDHIAECLADFMRDND 124 (142)
Q Consensus 65 fLalDlGGTnlRv~~V~Lg~~~~~~~~~~~~i--p~-~~~~~~~~~lFd~ia~~i~~fl~~~~ 124 (142)
+|+||+|.|+.|++++...++.+...+..|.+ |+ .....+.+++|+-+.++|.+.+++.+
T Consensus 2 vlgID~GTts~Ka~l~d~~G~~~~~~~~~~~~~~~~~G~~Eqdp~~~w~~~~~~i~~~~~~~~ 64 (512)
T PLN02295 2 VGAIDQGTTSTRFIIYDRDARPVASHQVEFTQIYPQAGWVEHDPMEILESVLTCIAKALEKAA 64 (512)
T ss_pred EEEEecCCCceEEEEECCCCCEEEEEeecccccCCCCCcEeeCHHHHHHHHHHHHHHHHHHcC
Confidence 68999999999999999833333334444432 32 22334678999999999999887654
No 24
>PRK09557 fructokinase; Reviewed
Probab=96.30 E-value=0.027 Score=45.21 Aligned_cols=51 Identities=24% Similarity=0.289 Sum_probs=36.9
Q ss_pred EEEEecCCceEEEEEEEe-cCceEEEEEEEeecCCCccCCChhHHHHHHHHHHHHHhhh
Q psy6344 65 FLALDLGGTNFRVLIIYL-EENHFKMESKVYSIPQDIMTGSGTQLFDHIAECLADFMRD 122 (142)
Q Consensus 65 fLalDlGGTnlRv~~V~L-g~~~~~~~~~~~~ip~~~~~~~~~~lFd~ia~~i~~fl~~ 122 (142)
+|++|+|||++|++++++ ++ . +....+..|. .+.+++.+.|++.+.+++..
T Consensus 2 ~lgidig~t~~~~~l~d~~g~-i--~~~~~~~~~~----~~~~~~~~~i~~~i~~~~~~ 53 (301)
T PRK09557 2 RIGIDLGGTKIEVIALDDAGE-E--LFRKRLPTPR----DDYQQTIEAIATLVDMAEQA 53 (301)
T ss_pred EEEEEECCCcEEEEEECCCCC-E--EEEEEecCCC----CCHHHHHHHHHHHHHHHHhh
Confidence 689999999999999999 43 2 2334444442 24578889998888887654
No 25
>PTZ00288 glucokinase 1; Provisional
Probab=96.25 E-value=0.02 Score=48.77 Aligned_cols=55 Identities=20% Similarity=0.257 Sum_probs=33.8
Q ss_pred cEEEEecCCceEEEEEEEe-cCceEEEEEEEeecCCCccCCChhHHHHHHHHHHHHHh
Q psy6344 64 KFLALDLGGTNFRVLIIYL-EENHFKMESKVYSIPQDIMTGSGTQLFDHIAECLADFM 120 (142)
Q Consensus 64 ~fLalDlGGTnlRv~~V~L-g~~~~~~~~~~~~ip~~~~~~~~~~lFd~ia~~i~~fl 120 (142)
.+|++|+||||.|+++.+. ..+.-........++ ++..+..++.+++++.+....
T Consensus 27 ~~~~~DiGgt~~R~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~ 82 (405)
T PTZ00288 27 IFVGCDVGGTNARVGFAREVQHDDSGVHIIYVRFN--VTKTDIRELLEFFDEVLQKLK 82 (405)
T ss_pred eEEEEEecCCceEEEEEeccCCCCCceeEEEEecc--cccccHHHHHHHHHHHHHHHH
Confidence 5799999999999999998 222111222233333 223334677777777666633
No 26
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=96.21 E-value=0.03 Score=48.92 Aligned_cols=60 Identities=15% Similarity=0.381 Sum_probs=41.7
Q ss_pred EEEEecCCceEEEEEEEecCceEEEEEEEeec--CC-CccCCChhHHHHHHHHHHHHHhhhcC
Q psy6344 65 FLALDLGGTNFRVLIIYLEENHFKMESKVYSI--PQ-DIMTGSGTQLFDHIAECLADFMRDND 124 (142)
Q Consensus 65 fLalDlGGTnlRv~~V~Lg~~~~~~~~~~~~i--p~-~~~~~~~~~lFd~ia~~i~~fl~~~~ 124 (142)
||+||+|+|+.|++++...++.....++.|.. |. .....+.+++++-+.+++.+.+++.+
T Consensus 2 ~lgID~GTts~Ka~l~d~~G~i~~~~~~~~~~~~~~~g~~eqdp~~~~~~~~~~i~~~~~~~~ 64 (541)
T TIGR01315 2 YIGVDVGTGSARACIIDSTGDILALAAQNIKTWTPSSGLEGQSSVYIWQAICNCVKQVLAESK 64 (541)
T ss_pred EEEEEecCcCEEEEEEcCCCCEEEEEEeeeeeccCCCCcccCCHHHHHHHHHHHHHHHHHHcC
Confidence 78999999999999999733333333333432 22 22334578899999999999887644
No 27
>PRK00047 glpK glycerol kinase; Provisional
Probab=96.18 E-value=0.027 Score=48.58 Aligned_cols=61 Identities=21% Similarity=0.318 Sum_probs=42.5
Q ss_pred cEEEEecCCceEEEEEEEecCceEEEEEEEeec--CCC-ccCCChhHHHHHHHHHHHHHhhhcC
Q psy6344 64 KFLALDLGGTNFRVLIIYLEENHFKMESKVYSI--PQD-IMTGSGTQLFDHIAECLADFMRDND 124 (142)
Q Consensus 64 ~fLalDlGGTnlRv~~V~Lg~~~~~~~~~~~~i--p~~-~~~~~~~~lFd~ia~~i~~fl~~~~ 124 (142)
-+|+||+|+|+.|++++...++.....++.|.+ |.. ....+.+++++-+.+++.+.+++.+
T Consensus 6 ~~lgiD~GTts~Ka~l~d~~g~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~ 69 (498)
T PRK00047 6 YILALDQGTTSSRAIIFDHDGNIVSVAQKEFTQIFPQPGWVEHDPNEIWASQLSVIAEALAKAG 69 (498)
T ss_pred EEEEEecCCCceEEEEECCCCCEEEEEeeeccccCCCCCeEeeCHHHHHHHHHHHHHHHHHHcC
Confidence 378999999999999999833444444444532 321 1123578999999999999876543
No 28
>PRK15027 xylulokinase; Provisional
Probab=96.16 E-value=0.035 Score=47.74 Aligned_cols=59 Identities=10% Similarity=0.279 Sum_probs=42.3
Q ss_pred EEEEecCCceEEEEEEEecCceEEEEEEEeec--C-CCccCCChhHHHHHHHHHHHHHhhhc
Q psy6344 65 FLALDLGGTNFRVLIIYLEENHFKMESKVYSI--P-QDIMTGSGTQLFDHIAECLADFMRDN 123 (142)
Q Consensus 65 fLalDlGGTnlRv~~V~Lg~~~~~~~~~~~~i--p-~~~~~~~~~~lFd~ia~~i~~fl~~~ 123 (142)
||+||+|.|+.|++++...++.....++.|.+ | .....-+.+++++.+.+++++.+++.
T Consensus 2 ~lgID~GTts~Ka~l~d~~G~vva~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~l~~~~ 63 (484)
T PRK15027 2 YIGIDLGTSGVKVILLNEQGEVVASQTEKLTVSRPHPLWSEQDPEQWWQATDRAMKALGDQH 63 (484)
T ss_pred EEEEEecccceEEEEEcCCCCEEEEEeecccccCCCCCccccCHHHHHHHHHHHHHHHHHhC
Confidence 89999999999999999733333334455543 2 22233457889999999999987653
No 29
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=96.00 E-value=0.048 Score=47.28 Aligned_cols=60 Identities=15% Similarity=0.255 Sum_probs=43.2
Q ss_pred cEEEEecCCceEEEEEEEe-cCceEEEEEEEeecC--C-CccCCChhHHHHHHHHHHHHHhhhc
Q psy6344 64 KFLALDLGGTNFRVLIIYL-EENHFKMESKVYSIP--Q-DIMTGSGTQLFDHIAECLADFMRDN 123 (142)
Q Consensus 64 ~fLalDlGGTnlRv~~V~L-g~~~~~~~~~~~~ip--~-~~~~~~~~~lFd~ia~~i~~fl~~~ 123 (142)
-||+||+|.|+.|+++++. ++.........+.+. . .-..-+.++++..+.++|...+++.
T Consensus 5 ~~lgIDiGTt~~Kavl~d~~~~~~~~~~~~~~~~~~~~~g~~e~d~~~~w~~~~~ai~~l~~~~ 68 (502)
T COG1070 5 YVLGIDIGTTSVKAVLFDEDGGEVVATARFENPVSTPQPGWAEQDPDELWQAILEALRQLLEES 68 (502)
T ss_pred EEEEEEcCCCcEEEEEEeCCCCeEEEEeeccccccCCCCCCcccCHHHHHHHHHHHHHHHHHhc
Confidence 5799999999999999999 444433333333332 1 1223467999999999999988764
No 30
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=95.99 E-value=0.047 Score=47.18 Aligned_cols=60 Identities=13% Similarity=0.232 Sum_probs=41.8
Q ss_pred cEEEEecCCceEEEEEEEecCceEEEEEEEeec--C-CCccCCChhHHHHHHHHHHHHHhhhc
Q psy6344 64 KFLALDLGGTNFRVLIIYLEENHFKMESKVYSI--P-QDIMTGSGTQLFDHIAECLADFMRDN 123 (142)
Q Consensus 64 ~fLalDlGGTnlRv~~V~Lg~~~~~~~~~~~~i--p-~~~~~~~~~~lFd~ia~~i~~fl~~~ 123 (142)
-+|+||+|.|+.|+++++..++.+...+..+.+ | +.....+.+++|+-+.+++.+.+++.
T Consensus 3 ~~lgiDiGTts~Ka~l~d~~G~~v~~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~ 65 (504)
T PTZ00294 3 YIGSIDQGTTSTRFIIFDEKGNVVSSHQIPHEQITPHPGWLEHDPEEILRNVYKCMNEAIKKL 65 (504)
T ss_pred EEEEEecCCCceEEEEECCCCCEEEEEEEeecccCCCCCeEeeCHHHHHHHHHHHHHHHHHHc
Confidence 378999999999999999833444444444432 2 22223457889999999999987654
No 31
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=95.98 E-value=0.052 Score=43.34 Aligned_cols=52 Identities=15% Similarity=0.273 Sum_probs=37.2
Q ss_pred EEEEecCCceEEEEEEEecCceEEEEEEEeecCCCccCCChhHHHHHHHHHHHHHhh
Q psy6344 65 FLALDLGGTNFRVLIIYLEENHFKMESKVYSIPQDIMTGSGTQLFDHIAECLADFMR 121 (142)
Q Consensus 65 fLalDlGGTnlRv~~V~Lg~~~~~~~~~~~~ip~~~~~~~~~~lFd~ia~~i~~fl~ 121 (142)
++++|+|||++|++++.+.+.. +....++.|.. .+.+++.+.|++.+.++..
T Consensus 3 ~lgvdig~~~i~~~l~dl~g~i--~~~~~~~~~~~---~~~~~~~~~i~~~i~~~~~ 54 (291)
T PRK05082 3 TLAIDIGGTKIAAALVGEDGQI--RQRRQIPTPAS---QTPEALRQALSALVSPLQA 54 (291)
T ss_pred EEEEEECCCEEEEEEEcCCCcE--EEEEEecCCCC---CCHHHHHHHHHHHHHHhhh
Confidence 7999999999999999993222 23344455432 2457789999998888753
No 32
>PRK10331 L-fuculokinase; Provisional
Probab=95.88 E-value=0.052 Score=46.48 Aligned_cols=59 Identities=20% Similarity=0.252 Sum_probs=40.3
Q ss_pred cEEEEecCCceEEEEEEEecCceEEEEEEEeec----CC-CccCCChhHHHHHHHHHHHHHhhh
Q psy6344 64 KFLALDLGGTNFRVLIIYLEENHFKMESKVYSI----PQ-DIMTGSGTQLFDHIAECLADFMRD 122 (142)
Q Consensus 64 ~fLalDlGGTnlRv~~V~Lg~~~~~~~~~~~~i----p~-~~~~~~~~~lFd~ia~~i~~fl~~ 122 (142)
-+|+||+|.|+.|++++...++.....+..+.. |. ....-+.+++++.+.+++.+.+++
T Consensus 3 ~~lgID~GTt~~Ka~l~d~~G~~~~~~~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~~~~~ 66 (470)
T PRK10331 3 VILVLDCGATNVRAIAVDRQGKIVARASTPNASDIAAENSDWHQWSLDAILQRFADCCRQINSE 66 (470)
T ss_pred eEEEEecCCCceEEEEEcCCCcEEEEEecccccccCCCCCCCcccCHHHHHHHHHHHHHHHHHh
Confidence 378999999999999999833333333333321 11 122335788999999999997764
No 33
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=95.59 E-value=0.021 Score=50.86 Aligned_cols=20 Identities=40% Similarity=0.426 Sum_probs=17.8
Q ss_pred ccEEEEecCCceEEEEEEEe
Q psy6344 63 GKFLALDLGGTNFRVLIIYL 82 (142)
Q Consensus 63 G~fLalDlGGTnlRv~~V~L 82 (142)
|-+|++|+||||.|++++.-
T Consensus 18 ~~~L~iDIGGT~ir~al~~~ 37 (638)
T PRK14101 18 GPRLLADVGGTNARFALETG 37 (638)
T ss_pred CCEEEEEcCchhheeeeecC
Confidence 56999999999999999853
No 34
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=95.55 E-value=0.063 Score=45.66 Aligned_cols=71 Identities=15% Similarity=0.265 Sum_probs=44.9
Q ss_pred EEEecCCceEEEEEEEecCceEEEEEEEeec--C-CCccCCChhHHHHHHHHHHHHHhhhcCCCCCccceEEEEe
Q psy6344 66 LALDLGGTNFRVLIIYLEENHFKMESKVYSI--P-QDIMTGSGTQLFDHIAECLADFMRDNDVASERLPLGFTFS 137 (142)
Q Consensus 66 LalDlGGTnlRv~~V~Lg~~~~~~~~~~~~i--p-~~~~~~~~~~lFd~ia~~i~~fl~~~~~~~~~l~lGfTFS 137 (142)
|+||+|.|++|++++.+.+..+...+..+.. | +.....+.+++++.+++++.+++++.+... .-..|+.+|
T Consensus 1 lgIDiGtt~ik~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~l~~~i~~~~~~~~~~~-~~I~gIgvs 74 (481)
T TIGR01312 1 LGIDLGTSGVKALLVDEQGEVIASGSAPHTVISPHPGWSEQDPEDWWDATEEAIKELLEQASEMG-QDIKGIGIS 74 (481)
T ss_pred CceeecCcceEEEEECCCCCEEEEEeecccccCCCCCCeeeCHHHHHHHHHHHHHHHHHhcCCCc-ccEEEEEEe
Confidence 5899999999999999833333223333321 1 111234578899999999999987754322 123455554
No 35
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=95.51 E-value=0.076 Score=45.46 Aligned_cols=58 Identities=21% Similarity=0.313 Sum_probs=40.2
Q ss_pred EEEEecCCceEEEEEEEecCceEEEEEEEeec----C-CCccCCChhHHHHHHHHHHHHHhhh
Q psy6344 65 FLALDLGGTNFRVLIIYLEENHFKMESKVYSI----P-QDIMTGSGTQLFDHIAECLADFMRD 122 (142)
Q Consensus 65 fLalDlGGTnlRv~~V~Lg~~~~~~~~~~~~i----p-~~~~~~~~~~lFd~ia~~i~~fl~~ 122 (142)
+|+||+|.|+.|+++++..++.....+..+.. | +....-+.+++|+.+.+++++.+.+
T Consensus 3 ilgiD~GTss~K~~l~d~~g~~va~~~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~l~~~ 65 (465)
T TIGR02628 3 ILVLDCGATNLRAIAINRQGKIVASASTPNATKQAIENNDYHIWDLEAIWQKLADCCQQINSE 65 (465)
T ss_pred EEEEecCCCcEEEEEEcCCCCEEEEEecccccCCCCCCCCceeeCHHHHHHHHHHHHHHHHhh
Confidence 68999999999999999833333333333331 2 1222346789999999999998753
No 36
>PRK04123 ribulokinase; Provisional
Probab=95.20 E-value=0.15 Score=44.48 Aligned_cols=61 Identities=10% Similarity=0.231 Sum_probs=41.3
Q ss_pred cEEEEecCCceEEEEEEEe-cCceEEEEEEEeec--------CC-CccCCChhHHHHHHHHHHHHHhhhcC
Q psy6344 64 KFLALDLGGTNFRVLIIYL-EENHFKMESKVYSI--------PQ-DIMTGSGTQLFDHIAECLADFMRDND 124 (142)
Q Consensus 64 ~fLalDlGGTnlRv~~V~L-g~~~~~~~~~~~~i--------p~-~~~~~~~~~lFd~ia~~i~~fl~~~~ 124 (142)
.||+||+|.|+.|++++.. +++.....+..|.. |. ....-+.+++++-+.++|.+.+++.+
T Consensus 4 ~~lgiD~GTts~Ka~l~d~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~i~~~~~~~~ 74 (548)
T PRK04123 4 YVIGLDFGTDSVRALLVDCATGEELATAVVEYPHWVKGRYLDLPPNQALQHPLDYIESLEAAIPAVLKEAG 74 (548)
T ss_pred EEEEEecCCCceEEEEEECCCCcEeEEEEeeccccccccccCCCCCceeeCHHHHHHHHHHHHHHHHHHcC
Confidence 4789999999999999995 55444334444431 21 11223467889999999999776543
No 37
>PRK13321 pantothenate kinase; Reviewed
Probab=95.13 E-value=0.11 Score=41.29 Aligned_cols=48 Identities=17% Similarity=0.317 Sum_probs=30.2
Q ss_pred EEEEecCCceEEEEEEEecCceEEEEEEEeecCCCccCCChhHHHHHHHHHHHH
Q psy6344 65 FLALDLGGTNFRVLIIYLEENHFKMESKVYSIPQDIMTGSGTQLFDHIAECLAD 118 (142)
Q Consensus 65 fLalDlGGTnlRv~~V~Lg~~~~~~~~~~~~ip~~~~~~~~~~lFd~ia~~i~~ 118 (142)
+|+||+|||++|+++++ ++ + +.. .|++|-... .+.+++...+.+.+.+
T Consensus 2 iL~IDIGnT~ik~gl~~-~~-~--i~~-~~~~~T~~~-~~~~~~~~~l~~l~~~ 49 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFD-GD-R--LLR-SFRLPTDKS-RTSDELGILLLSLFRH 49 (256)
T ss_pred EEEEEECCCeEEEEEEE-CC-E--EEE-EEEEecCCC-CCHHHHHHHHHHHHHH
Confidence 68999999999999998 44 2 222 355544322 2246666666665543
No 38
>TIGR00749 glk glucokinase, proteobacterial type. This model represents glucokinase of E. coli and close homologs, mostly from other proteobacteria, presumed to have equivalent function. This glucokinase is more closely related to a number of uncharacterized paralogs than to the glucokinase glcK (fromerly yqgR) of Bacillus subtilis and its closest homologs, so the two sets are represented by separate models.
Probab=94.88 E-value=0.051 Score=44.19 Aligned_cols=17 Identities=41% Similarity=0.618 Sum_probs=15.8
Q ss_pred EEEecCCceEEEEEEEe
Q psy6344 66 LALDLGGTNFRVLIIYL 82 (142)
Q Consensus 66 LalDlGGTnlRv~~V~L 82 (142)
|++|+||||.|+++|+-
T Consensus 1 l~~DIGGT~i~~glvd~ 17 (316)
T TIGR00749 1 LVGDIGGTNARLALCEI 17 (316)
T ss_pred CeEecCcceeeEEEEec
Confidence 68999999999999986
No 39
>PF02685 Glucokinase: Glucokinase; InterPro: IPR003836 Glucokinases 2.7.1.2 from EC are found in invertebrates and microorganisms and are highly specific for glucose. These enzymes phosphorylate glucose using ATP as a donor to give glucose-6-phosphate and ADP [].; GO: 0004340 glucokinase activity, 0005524 ATP binding, 0006096 glycolysis, 0051156 glucose 6-phosphate metabolic process; PDB: 1SZ2_B 1Q18_B 2Q2R_B.
Probab=93.80 E-value=0.24 Score=40.79 Aligned_cols=47 Identities=26% Similarity=0.427 Sum_probs=30.0
Q ss_pred EEEecCCceEEEEEEEecCceEE-EEEEEeecCCCccCCChhHHHHHHHHHHHH
Q psy6344 66 LALDLGGTNFRVLIIYLEENHFK-MESKVYSIPQDIMTGSGTQLFDHIAECLAD 118 (142)
Q Consensus 66 LalDlGGTnlRv~~V~Lg~~~~~-~~~~~~~ip~~~~~~~~~~lFd~ia~~i~~ 118 (142)
|+-|+||||-|+++++.++...+ ...+.|+-.+ ...|-+.|++.+.+
T Consensus 1 Lv~DIGGTn~Rlal~~~~~~~~~~~~~~~~~~~~------~~s~~~~l~~~l~~ 48 (316)
T PF02685_consen 1 LVADIGGTNTRLALAEPDGGPLQLIDIRRYPSAD------FPSFEDALADYLAE 48 (316)
T ss_dssp EEEEEETTEEEEEEEECTCGG-EEEEEEEEEGCC------CCHHHHHHHHHHHH
T ss_pred CeEEeCcccEEEEEEEcCCCCccccccEEEecCC------cCCHHHHHHHHHHh
Confidence 68899999999999999433322 2344444333 34566666665554
No 40
>PRK13318 pantothenate kinase; Reviewed
Probab=93.80 E-value=0.34 Score=38.37 Aligned_cols=17 Identities=35% Similarity=0.430 Sum_probs=16.2
Q ss_pred EEEEecCCceEEEEEEE
Q psy6344 65 FLALDLGGTNFRVLIIY 81 (142)
Q Consensus 65 fLalDlGGTnlRv~~V~ 81 (142)
+|+||+|||++|+++++
T Consensus 2 iL~IDIGnT~iK~al~d 18 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYE 18 (258)
T ss_pred EEEEEECCCcEEEEEEE
Confidence 68999999999999998
No 41
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=93.07 E-value=0.41 Score=40.78 Aligned_cols=55 Identities=20% Similarity=0.241 Sum_probs=36.0
Q ss_pred EEEecCCceEEEEEEEe-cC-ceEEEEEEEeecCCC-c-----cCCChhHHHHHHHHHHHHHhh
Q psy6344 66 LALDLGGTNFRVLIIYL-EE-NHFKMESKVYSIPQD-I-----MTGSGTQLFDHIAECLADFMR 121 (142)
Q Consensus 66 LalDlGGTnlRv~~V~L-g~-~~~~~~~~~~~ip~~-~-----~~~~~~~lFd~ia~~i~~fl~ 121 (142)
||||+|.|+.|++++.. ++ ++..+.. .++.++. . ..-+.+++++.+.+++++...
T Consensus 1 ~aiD~Gtt~~k~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~ 63 (454)
T TIGR02627 1 VAVDLGASSGRVMLASYENECQKLTLEE-IHRFKNGLVSQNGHECWDIDALEQEIRLGLNKVDA 63 (454)
T ss_pred CcEeccCCchheEEEEEcCCCceEEEEE-EEeCCCCCEeECCEEEEehHHHHHHHHHHHHHHhc
Confidence 68999999999999999 44 3332212 1222221 1 122456899999999999754
No 42
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=92.51 E-value=0.96 Score=33.90 Aligned_cols=56 Identities=14% Similarity=0.270 Sum_probs=35.3
Q ss_pred EEEEecCCceEEEEEEEe-cCceEEEEEEEeecCCCccCCChhHHHHHHHHHHHHHhh
Q psy6344 65 FLALDLGGTNFRVLIIYL-EENHFKMESKVYSIPQDIMTGSGTQLFDHIAECLADFMR 121 (142)
Q Consensus 65 fLalDlGGTnlRv~~V~L-g~~~~~~~~~~~~ip~~~~~~~~~~lFd~ia~~i~~fl~ 121 (142)
|.+||+|-++++++..+. +++.+++......-+..+..|.-.+ .+-++++|.+-++
T Consensus 1 ~~~lDIGs~~ik~vv~~~~~~~~~~i~g~~~~~s~gi~~G~I~d-~~~~~~~I~~ai~ 57 (187)
T smart00842 1 IVGLDIGTSKIKALVAEVDEDGEINVIGVGEVPSRGIRKGVIVD-IEAAARAIREAVE 57 (187)
T ss_pred CEEEEeccceEEEEEEEEcCCCCEEEEEEEEecCCCccCcEEEC-HHHHHHHHHHHHH
Confidence 579999999999999999 6667777655544334455553222 2333444444443
No 43
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=91.28 E-value=2.1 Score=34.81 Aligned_cols=61 Identities=21% Similarity=0.492 Sum_probs=36.9
Q ss_pred cEEEEecCCceEEEEEEEecCceEEEEE-EEeecCCCcc-CCChhHHHHHHHHHHHHHhhhcCC
Q psy6344 64 KFLALDLGGTNFRVLIIYLEENHFKMES-KVYSIPQDIM-TGSGTQLFDHIAECLADFMRDNDV 125 (142)
Q Consensus 64 ~fLalDlGGTnlRv~~V~Lg~~~~~~~~-~~~~ip~~~~-~~~~~~lFd~ia~~i~~fl~~~~~ 125 (142)
.+++||+|.+++|++.++-.++.+++.. ....+|.... .+.-.+ .+-+++.|.+.+++.+.
T Consensus 4 ~~vgiDIg~~~Ik~v~~~~~~~~~~v~~~~~~~~p~~~i~~g~i~d-~~~~~~~l~~~~~~~~~ 66 (348)
T TIGR01175 4 LLVGIDIGSTSVKVAQLKRSGDRYKLEHYAVEPLPAGIFTEGHIVE-YQAVAEALKELLSELGI 66 (348)
T ss_pred cEEEEEeccCeEEEEEEEecCCceEEEEEEEEECCCCcccCCCccC-HHHHHHHHHHHHHHcCC
Confidence 5899999999999998887334555543 3456776543 332111 23455566665555443
No 44
>PLN02669 xylulokinase
Probab=91.04 E-value=1.3 Score=39.11 Aligned_cols=62 Identities=13% Similarity=0.233 Sum_probs=38.8
Q ss_pred cCCCCCccccEEEEecCCceEEEEEEEecCceEEEEEEEeec--CC-----CccCCChh----------HHHHHHHHHHH
Q psy6344 55 DLPNGKEKGKFLALDLGGTNFRVLIIYLEENHFKMESKVYSI--PQ-----DIMTGSGT----------QLFDHIAECLA 117 (142)
Q Consensus 55 ~~P~G~E~G~fLalDlGGTnlRv~~V~Lg~~~~~~~~~~~~i--p~-----~~~~~~~~----------~lFd~ia~~i~ 117 (142)
++|.+. -||+||+|.|++|+++++..++.+...+..|.+ |. .+.. +.+ ..++-+..++.
T Consensus 3 ~~~~~~---~~LGiD~GT~s~Ka~l~d~~g~vv~~a~~~~~~~~~~~~~~~gve~-dp~~~~~~~~~~~~w~~al~~~l~ 78 (556)
T PLN02669 3 SLPEDS---LFLGFDSSTQSLKATVLDSNLRIVASEIVHFDSDLPHYGTKDGVYR-DPKVNGRIVSPTLMWVEALDLLLQ 78 (556)
T ss_pred CCCCCC---eEEEEecccCCeEEEEEcCCCCEEEEEEecCCcccCcCCCCCceEe-CCcccCccCCCHHHHHHHHHHHHH
Confidence 466665 689999999999999999833343334444431 22 1111 122 45588888888
Q ss_pred HHh
Q psy6344 118 DFM 120 (142)
Q Consensus 118 ~fl 120 (142)
+..
T Consensus 79 ~l~ 81 (556)
T PLN02669 79 KLA 81 (556)
T ss_pred HHH
Confidence 855
No 45
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=90.35 E-value=1.3 Score=34.74 Aligned_cols=47 Identities=13% Similarity=0.292 Sum_probs=29.5
Q ss_pred EEEEecCCceEEEEEEEecCceEEEEEEEeecCCCccCCChhHHHHHHHHHHHHHhhhc
Q psy6344 65 FLALDLGGTNFRVLIIYLEENHFKMESKVYSIPQDIMTGSGTQLFDHIAECLADFMRDN 123 (142)
Q Consensus 65 fLalDlGGTnlRv~~V~Lg~~~~~~~~~~~~ip~~~~~~~~~~lFd~ia~~i~~fl~~~ 123 (142)
+++||+|.|+.|+++++ .+. +....+.=| ...++-+++.+.+.+++.
T Consensus 2 ~lGIDiGtts~K~vl~d-~g~---il~~~~~~~--------~~~~~~~~~~l~~~~~~~ 48 (248)
T TIGR00241 2 SLGIDSGSTTTKMVLME-DGK---VIGYKWLDT--------TPVIEETARAILEALKEA 48 (248)
T ss_pred EEEEEcChhheEEEEEc-CCE---EEEEEEecC--------CCCHHHHHHHHHHHHHHc
Confidence 68999999999999997 432 222223211 234555566676666543
No 46
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=88.90 E-value=2 Score=33.91 Aligned_cols=58 Identities=14% Similarity=0.220 Sum_probs=38.1
Q ss_pred EEEecCCceEEEEEEEecCceEEEEEEEeecCCCccCCChhHHHHHHHHHHHHHhhhcCCC
Q psy6344 66 LALDLGGTNFRVLIIYLEENHFKMESKVYSIPQDIMTGSGTQLFDHIAECLADFMRDNDVA 126 (142)
Q Consensus 66 LalDlGGTnlRv~~V~Lg~~~~~~~~~~~~ip~~~~~~~~~~lFd~ia~~i~~fl~~~~~~ 126 (142)
|.||-|||..|+++++..+. +..+...-|.+......++...-|.+-|.+.+++.+..
T Consensus 1 lGIDgGgTkt~~vl~d~~g~---il~~~~~~~~n~~~~~~~~~~~~i~~~i~~~~~~~~~~ 58 (271)
T PF01869_consen 1 LGIDGGGTKTKAVLVDENGN---ILGRGKGGGANYNSVGFEEAMENIKEAIEEALSQAGLS 58 (271)
T ss_dssp EEEEECSSEEEEEEEETTSE---EEEEEEES-TTHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CEEeeChheeeeEEEeCCCC---EEEEEEeCCCCCCCCCcchhhhHHHHHHHHHHHHcCCC
Confidence 67999999999999997332 33444445554443334666777778788877765543
No 47
>PRK13411 molecular chaperone DnaK; Provisional
Probab=87.92 E-value=2.1 Score=38.56 Aligned_cols=30 Identities=33% Similarity=0.623 Sum_probs=24.4
Q ss_pred cccEEEEecCCceEEEEEEEecCceEEEEE
Q psy6344 62 KGKFLALDLGGTNFRVLIIYLEENHFKMES 91 (142)
Q Consensus 62 ~G~fLalDlGGTnlRv~~V~Lg~~~~~~~~ 91 (142)
.+.+|++|+||.++-|.+++++++.+++..
T Consensus 185 ~~~vlV~DlGgGT~dvsi~~~~~~~~~V~a 214 (653)
T PRK13411 185 EQLILVFDLGGGTFDVSILQLGDGVFEVKA 214 (653)
T ss_pred CCEEEEEEcCCCeEEEEEEEEeCCEEEEEE
Confidence 457999999999999999999555665553
No 48
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=87.77 E-value=2.1 Score=37.80 Aligned_cols=30 Identities=37% Similarity=0.619 Sum_probs=24.0
Q ss_pred cccEEEEecCCceEEEEEEEecCceEEEEE
Q psy6344 62 KGKFLALDLGGTNFRVLIIYLEENHFKMES 91 (142)
Q Consensus 62 ~G~fLalDlGGTnlRv~~V~Lg~~~~~~~~ 91 (142)
...+|.+|+||.++-|.+++++++.+++..
T Consensus 182 ~~~vlV~D~Gggt~dvsv~~~~~~~~~v~~ 211 (595)
T TIGR02350 182 DEKILVFDLGGGTFDVSILEIGDGVFEVLS 211 (595)
T ss_pred CcEEEEEECCCCeEEEEEEEecCCeEEEEE
Confidence 457899999999999999999555555543
No 49
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=87.69 E-value=4.3 Score=33.58 Aligned_cols=56 Identities=11% Similarity=0.226 Sum_probs=33.8
Q ss_pred EEEEecCCceEEEEEEEe-cCceEEEEEEEeecCCCccCCChhHHHHHHHHHHHHHhh
Q psy6344 65 FLALDLGGTNFRVLIIYL-EENHFKMESKVYSIPQDIMTGSGTQLFDHIAECLADFMR 121 (142)
Q Consensus 65 fLalDlGGTnlRv~~V~L-g~~~~~~~~~~~~ip~~~~~~~~~~lFd~ia~~i~~fl~ 121 (142)
+++||+|-+++|++..+. +++.+++......-...+..|.-.+ .+-+++.|.+.++
T Consensus 2 ~~~lDIGs~~ik~vv~~~~~~~~~~i~~~~~~~~~gi~~G~I~d-~~~~~~~i~~al~ 58 (371)
T TIGR01174 2 IVGLDIGTSKICAIVAEVLEDGELNIIGVGTHPSRGIKKGVIND-IEAAVGSIQRAIE 58 (371)
T ss_pred EEEEEeccceEEEEEEEEcCCCCEEEEEEEEecCCCccCcEEEc-HHHHHHHHHHHHH
Confidence 689999999999999998 6665666543322223344553222 2334555555444
No 50
>CHL00094 dnaK heat shock protein 70
Probab=87.59 E-value=2.1 Score=38.21 Aligned_cols=31 Identities=32% Similarity=0.540 Sum_probs=24.7
Q ss_pred ccEEEEecCCceEEEEEEEecCceEEEEEEE
Q psy6344 63 GKFLALDLGGTNFRVLIIYLEENHFKMESKV 93 (142)
Q Consensus 63 G~fLalDlGGTnlRv~~V~Lg~~~~~~~~~~ 93 (142)
+.++++|+||.++-|.+++++++.+++....
T Consensus 187 ~~vlV~DlGgGT~DvSv~~~~~~~~~vla~~ 217 (621)
T CHL00094 187 ETILVFDLGGGTFDVSILEVGDGVFEVLSTS 217 (621)
T ss_pred CEEEEEEcCCCeEEEEEEEEcCCEEEEEEEe
Confidence 4689999999999999999966666555433
No 51
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=87.47 E-value=1.7 Score=37.92 Aligned_cols=32 Identities=22% Similarity=0.509 Sum_probs=25.3
Q ss_pred ccccEEEEecCCceEEEEEEEecCceEEEEEE
Q psy6344 61 EKGKFLALDLGGTNFRVLIIYLEENHFKMESK 92 (142)
Q Consensus 61 E~G~fLalDlGGTnlRv~~V~Lg~~~~~~~~~ 92 (142)
..+.+|++|+||+++-|.+++..++.+++...
T Consensus 186 ~~~~vlv~D~Gggt~dvs~~~~~~~~~~v~~~ 217 (602)
T PF00012_consen 186 KGKTVLVVDFGGGTFDVSVVEFSNGQFEVLAT 217 (602)
T ss_dssp SEEEEEEEEEESSEEEEEEEEEETTEEEEEEE
T ss_pred cccceeccccccceEeeeehhccccccccccc
Confidence 45689999999999999999995455655443
No 52
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=86.63 E-value=2.1 Score=38.14 Aligned_cols=29 Identities=38% Similarity=0.612 Sum_probs=23.8
Q ss_pred ccEEEEecCCceEEEEEEEecCceEEEEE
Q psy6344 63 GKFLALDLGGTNFRVLIIYLEENHFKMES 91 (142)
Q Consensus 63 G~fLalDlGGTnlRv~~V~Lg~~~~~~~~ 91 (142)
..+|.+|+||.++-|.+++++++.+++..
T Consensus 185 ~~vlV~D~GggT~dvsv~~~~~~~~~vla 213 (627)
T PRK00290 185 EKILVYDLGGGTFDVSILEIGDGVFEVLS 213 (627)
T ss_pred CEEEEEECCCCeEEEEEEEEeCCeEEEEE
Confidence 57999999999999999999555555543
No 53
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=86.16 E-value=3 Score=36.98 Aligned_cols=76 Identities=8% Similarity=0.166 Sum_probs=54.6
Q ss_pred cEEEEecCCceEEEEEEEe-cCceEEEEEE---EeecCCCccCCChhHHHHHHHHHHHHHhhhcCCCCCccceEEEEecc
Q psy6344 64 KFLALDLGGTNFRVLIIYL-EENHFKMESK---VYSIPQDIMTGSGTQLFDHIAECLADFMRDNDVASERLPLGFTFSFP 139 (142)
Q Consensus 64 ~fLalDlGGTnlRv~~V~L-g~~~~~~~~~---~~~ip~~~~~~~~~~lFd~ia~~i~~fl~~~~~~~~~l~lGfTFSFP 139 (142)
-+++||+|--.-|+++++. .+.......+ .|.++......++.+.+.-+..+|.+.+++-+..+ .--.|+-|.+-
T Consensus 4 ~~iGvDvGTgSaRA~v~D~~~G~~la~a~~p~~~~~~~~~~~~q~s~d~~~av~~aVr~~v~~agv~~-~~V~gIGvDaT 82 (544)
T COG1069 4 YVIGVDVGTGSARAGVFDCQTGTLLARAVRPYPMWQPGSNLAEQHSRDYWEAVCAAVRDVVAKAGVDP-ADVVGIGVDAT 82 (544)
T ss_pred EEEEEeecCCceeEEEEEcCCCcchhhcccceeccccCccccccCHHHHHHHHHHHHHHHHHHcCCCh-hHeeEEEEcce
Confidence 3689999999999999999 3543333333 34455555556789999999999999998876543 33466666665
Q ss_pred c
Q psy6344 140 L 140 (142)
Q Consensus 140 ~ 140 (142)
|
T Consensus 83 c 83 (544)
T COG1069 83 C 83 (544)
T ss_pred e
Confidence 4
No 54
>PRK13410 molecular chaperone DnaK; Provisional
Probab=86.00 E-value=3.1 Score=37.70 Aligned_cols=52 Identities=23% Similarity=0.456 Sum_probs=32.9
Q ss_pred cccEEEEecCCceEEEEEEEecCceEEEEEEEeecCCCccCCC--hhHHHHHHHHHH
Q psy6344 62 KGKFLALDLGGTNFRVLIIYLEENHFKMESKVYSIPQDIMTGS--GTQLFDHIAECL 116 (142)
Q Consensus 62 ~G~fLalDlGGTnlRv~~V~Lg~~~~~~~~~~~~ip~~~~~~~--~~~lFd~ia~~i 116 (142)
.+.+|++|+||.++-|.+++++++.+++........ .-|. ...|.+|+++.+
T Consensus 186 ~~~vlV~DlGgGT~Dvsv~~~~~g~~~V~at~gd~~---lGG~dfD~~l~~~l~~~f 239 (668)
T PRK13410 186 SQTVLVFDLGGGTFDVSLLEVGNGVFEVKATSGDTQ---LGGNDFDKRIVDWLAEQF 239 (668)
T ss_pred CCEEEEEECCCCeEEEEEEEEcCCeEEEEEeecCCC---CChhHHHHHHHHHHHHHH
Confidence 357899999999999999999555665554332111 1121 245566665543
No 55
>KOG2517|consensus
Probab=85.56 E-value=4.3 Score=35.83 Aligned_cols=61 Identities=15% Similarity=0.356 Sum_probs=42.4
Q ss_pred cccEEEEecCCceEEEEEEEe-cCceEEEEEEEeec--C-CCccCCChhHHHHHHHHHHHHHhhh
Q psy6344 62 KGKFLALDLGGTNFRVLIIYL-EENHFKMESKVYSI--P-QDIMTGSGTQLFDHIAECLADFMRD 122 (142)
Q Consensus 62 ~G~fLalDlGGTnlRv~~V~L-g~~~~~~~~~~~~i--p-~~~~~~~~~~lFd~ia~~i~~fl~~ 122 (142)
..-+++||+|-|.-|+++.+- .+......++.... | ......+.++++.-+.+||+.-.+.
T Consensus 5 ~~~~~gIDvGTtSaR~~v~~~~~~e~l~~~~~~i~~~~~~~~~~eq~p~eI~~~V~~ci~~~~e~ 69 (516)
T KOG2517|consen 5 EPVVLGIDVGTTSARALVFNAKNGELLSLAQKEITQEFPKEGWVEQDPKEIWQAVCRCIEKACEK 69 (516)
T ss_pred cceEEEEEcCCCceEEEEEecCCCccceeeeeeeeeecCCCCeEEeCHHHHHHHHHHHHHHHHHh
Confidence 456899999999999999995 44333333333222 2 2333456899999999999986554
No 56
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=85.20 E-value=3.3 Score=37.43 Aligned_cols=29 Identities=21% Similarity=0.494 Sum_probs=23.6
Q ss_pred ccEEEEecCCceEEEEEEEecCceEEEEE
Q psy6344 63 GKFLALDLGGTNFRVLIIYLEENHFKMES 91 (142)
Q Consensus 63 G~fLalDlGGTnlRv~~V~Lg~~~~~~~~ 91 (142)
+.++++||||.+|=|.++++.++.+++..
T Consensus 212 ~~vlV~DlGGGT~DvSil~~~~g~~~V~a 240 (657)
T PTZ00186 212 SLIAVYDLGGGTFDISVLEIAGGVFEVKA 240 (657)
T ss_pred CEEEEEECCCCeEEEEEEEEeCCEEEEEE
Confidence 57899999999999999999555555543
No 57
>COG0837 Glk Glucokinase [Carbohydrate transport and metabolism]
Probab=83.83 E-value=2.7 Score=34.76 Aligned_cols=19 Identities=37% Similarity=0.530 Sum_probs=17.1
Q ss_pred cEEEEecCCceEEEEEEEe
Q psy6344 64 KFLALDLGGTNFRVLIIYL 82 (142)
Q Consensus 64 ~fLalDlGGTnlRv~~V~L 82 (142)
-.|+=|+||||.|+++|+.
T Consensus 7 p~LvgDIGGTnaRfaLv~~ 25 (320)
T COG0837 7 PRLVGDIGGTNARFALVEI 25 (320)
T ss_pred ceEEEecCCcceEEEEecc
Confidence 4677799999999999999
No 58
>PLN03184 chloroplast Hsp70; Provisional
Probab=81.10 E-value=7.9 Score=35.09 Aligned_cols=31 Identities=29% Similarity=0.550 Sum_probs=24.6
Q ss_pred cccEEEEecCCceEEEEEEEecCceEEEEEE
Q psy6344 62 KGKFLALDLGGTNFRVLIIYLEENHFKMESK 92 (142)
Q Consensus 62 ~G~fLalDlGGTnlRv~~V~Lg~~~~~~~~~ 92 (142)
.+.++++|+||.++-|.+++++++.+++...
T Consensus 223 ~~~vlV~DlGgGT~DvSi~~~~~~~~eVla~ 253 (673)
T PLN03184 223 NETILVFDLGGGTFDVSVLEVGDGVFEVLST 253 (673)
T ss_pred CCEEEEEECCCCeEEEEEEEecCCEEEEEEe
Confidence 3478999999999999999996556655443
No 59
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=81.09 E-value=7.8 Score=34.68 Aligned_cols=29 Identities=31% Similarity=0.584 Sum_probs=23.2
Q ss_pred cccEEEEecCCceEEEEEEEecCceEEEE
Q psy6344 62 KGKFLALDLGGTNFRVLIIYLEENHFKME 90 (142)
Q Consensus 62 ~G~fLalDlGGTnlRv~~V~Lg~~~~~~~ 90 (142)
.+.++.+|+||.++-|.++++.++.+++.
T Consensus 200 ~~~vlV~DlGGGT~DvSv~~~~~~~~evl 228 (616)
T PRK05183 200 EGVIAVYDLGGGTFDISILRLSKGVFEVL 228 (616)
T ss_pred CCEEEEEECCCCeEEEEEEEeeCCEEEEE
Confidence 45789999999999999999954555444
No 60
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=78.79 E-value=11 Score=33.56 Aligned_cols=29 Identities=34% Similarity=0.623 Sum_probs=23.2
Q ss_pred cccEEEEecCCceEEEEEEEecCceEEEE
Q psy6344 62 KGKFLALDLGGTNFRVLIIYLEENHFKME 90 (142)
Q Consensus 62 ~G~fLalDlGGTnlRv~~V~Lg~~~~~~~ 90 (142)
.+.++.+|+||.++=|.++++.++.+++.
T Consensus 180 ~~~vlV~DlGgGT~DvSi~~~~~~~~~vl 208 (599)
T TIGR01991 180 EGIYAVYDLGGGTFDVSILKLTKGVFEVL 208 (599)
T ss_pred CCEEEEEEcCCCeEEEEEEEEcCCeEEEE
Confidence 45799999999999999999954555443
No 61
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=78.73 E-value=10 Score=34.15 Aligned_cols=30 Identities=30% Similarity=0.651 Sum_probs=23.7
Q ss_pred cccEEEEecCCceEEEEEEEecCceEEEEE
Q psy6344 62 KGKFLALDLGGTNFRVLIIYLEENHFKMES 91 (142)
Q Consensus 62 ~G~fLalDlGGTnlRv~~V~Lg~~~~~~~~ 91 (142)
.+.++++|+||.++-|.++++.++.+++..
T Consensus 193 ~~~vlv~D~GggT~dvsv~~~~~~~~~v~a 222 (653)
T PTZ00009 193 EKNVLIFDLGGGTFDVSLLTIEDGIFEVKA 222 (653)
T ss_pred CCEEEEEECCCCeEEEEEEEEeCCeEEEEE
Confidence 357999999999999999999444555543
No 62
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=78.17 E-value=27 Score=29.63 Aligned_cols=55 Identities=7% Similarity=0.145 Sum_probs=35.9
Q ss_pred cEEEEecCCceEEEEEEEe-cCceEEEEEEEeecCCCccCCC---hhHHHHHHHHHHHH
Q psy6344 64 KFLALDLGGTNFRVLIIYL-EENHFKMESKVYSIPQDIMTGS---GTQLFDHIAECLAD 118 (142)
Q Consensus 64 ~fLalDlGGTnlRv~~V~L-g~~~~~~~~~~~~ip~~~~~~~---~~~lFd~ia~~i~~ 118 (142)
.+.+||+|-|..++++.++ +++.+++......-...++.|. -+..-+-|.+.+.+
T Consensus 9 ~i~~lDIGsskv~~vv~~~~~~~~~~i~g~~~~~s~gi~~G~I~d~~~~~~aI~~av~~ 67 (420)
T PRK09472 9 LVVGLEIGTAKVAALVGEVLPDGMVNIIGVGSCPSRGMDKGGVNDLESVVKCVQRAIDQ 67 (420)
T ss_pred EEEEEEcccceEEEEEEEEcCCCCEEEEEEEEccCCCccCCEEEcHHHHHHHHHHHHHH
Confidence 5789999999999998888 6666776554443344455553 24444555555444
No 63
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=77.50 E-value=11 Score=29.93 Aligned_cols=61 Identities=13% Similarity=0.146 Sum_probs=34.6
Q ss_pred CCCCccccEEEEecCCceEEEEEEEecCceEEEEEEEeecCCCccCCChhHHHHHHHHHHHHHhh
Q psy6344 57 PNGKEKGKFLALDLGGTNFRVLIIYLEENHFKMESKVYSIPQDIMTGSGTQLFDHIAECLADFMR 121 (142)
Q Consensus 57 P~G~E~G~fLalDlGGTnlRv~~V~Lg~~~~~~~~~~~~ip~~~~~~~~~~lFd~ia~~i~~fl~ 121 (142)
|.-+..+.+++||+|-|+.|+...+..+.. ..........++.|.-.+ ++-..+.|..+++
T Consensus 18 ~~~~~~~~~~~iDiGSssi~~vv~~~~~~~---~~~~~~~~~~vr~G~i~d-i~~a~~~i~~~~~ 78 (267)
T PRK15080 18 PVATESPLKVGVDLGTANIVLAVLDEDGQP---VAGALEWADVVRDGIVVD-FIGAVTIVRRLKA 78 (267)
T ss_pred CCCCCCCEEEEEEccCceEEEEEEcCCCCE---EEEEeccccccCCCEEee-HHHHHHHHHHHHH
Confidence 445567789999999999999887762212 222222223333333112 5555555665554
No 64
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=75.86 E-value=14 Score=33.00 Aligned_cols=30 Identities=40% Similarity=0.737 Sum_probs=24.1
Q ss_pred ccccEEEEecCCceEEEEEEEecCceEEEE
Q psy6344 61 EKGKFLALDLGGTNFRVLIIYLEENHFKME 90 (142)
Q Consensus 61 E~G~fLalDlGGTnlRv~~V~Lg~~~~~~~ 90 (142)
+.+.+|++|+||.++-|.++++.++.+++.
T Consensus 191 ~~~~vlV~DlGGGT~DvSi~~~~~~~~~V~ 220 (595)
T PRK01433 191 QKGCYLVYDLGGGTFDVSILNIQEGIFQVI 220 (595)
T ss_pred CCCEEEEEECCCCcEEEEEEEEeCCeEEEE
Confidence 356899999999999999999954555544
No 65
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=75.30 E-value=14 Score=30.24 Aligned_cols=60 Identities=17% Similarity=0.418 Sum_probs=33.1
Q ss_pred EEecCCceEEEEEEEecCceEEEE-EEEeecCCCccCCChhHHHHHHHHHHHHHhhhcCCC
Q psy6344 67 ALDLGGTNFRVLIIYLEENHFKME-SKVYSIPQDIMTGSGTQLFDHIAECLADFMRDNDVA 126 (142)
Q Consensus 67 alDlGGTnlRv~~V~Lg~~~~~~~-~~~~~ip~~~~~~~~~~lFd~ia~~i~~fl~~~~~~ 126 (142)
.||+|-.++|++.++-.++.+.+. .-...+|........-.=.+.+++.|.+.+++.+..
T Consensus 1 GiDiG~~siK~v~l~~~~~~~~l~~~~~~~~p~~~i~~g~i~d~~~l~~~L~~~~~~~~~~ 61 (340)
T PF11104_consen 1 GIDIGSSSIKAVELSKKGNRFQLEAFASIPLPPGAISDGEIVDPEALAEALKELLKENKIK 61 (340)
T ss_dssp EEEE-SSEEEEEEEETTTT--EEEEEEEEE--TTSEETTEES-HHHHHHHHHHHHHHHT--
T ss_pred CeecCCCeEEEEEEEEcCCccEEEEEEEEECCCCCccCCCcCCHHHHHHHHHHHHHHcCCC
Confidence 489999999998888744455554 345678877643221122345667777766665543
No 66
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=75.00 E-value=4.5 Score=34.74 Aligned_cols=21 Identities=24% Similarity=0.455 Sum_probs=16.5
Q ss_pred EEEecCCceEEEEEEEe-cCce
Q psy6344 66 LALDLGGTNFRVLIIYL-EENH 86 (142)
Q Consensus 66 LalDlGGTnlRv~~V~L-g~~~ 86 (142)
+|+|+|-|+++..+|+| .++.
T Consensus 4 iAvDiGTTti~~~L~dl~~G~~ 25 (412)
T PF14574_consen 4 IAVDIGTTTIAAYLVDLETGEV 25 (412)
T ss_dssp EEEEE-SSEEEEEEEETTT--E
T ss_pred EEEEcchhheeeEEEECCCCCE
Confidence 79999999999999999 5443
No 67
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=73.80 E-value=16 Score=32.64 Aligned_cols=25 Identities=28% Similarity=0.573 Sum_probs=21.8
Q ss_pred ccccEEEEecCCceEEEEEEEecCc
Q psy6344 61 EKGKFLALDLGGTNFRVLIIYLEEN 85 (142)
Q Consensus 61 E~G~fLalDlGGTnlRv~~V~Lg~~ 85 (142)
..+.+|+.||||-+|=|-+|+++++
T Consensus 170 ~~~~vlV~DlGGGTfDvSll~~~~g 194 (579)
T COG0443 170 KEKTVLVYDLGGGTFDVSLLEIGDG 194 (579)
T ss_pred CCcEEEEEEcCCCCEEEEEEEEcCC
Confidence 4568999999999999999999544
No 68
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=73.50 E-value=17 Score=29.94 Aligned_cols=59 Identities=20% Similarity=0.304 Sum_probs=41.4
Q ss_pred cEEEEecCCceEEEEEEEecCceEEEEEEEeecCCCccCCChhHHHHHHHHHHHHHhhhcCC
Q psy6344 64 KFLALDLGGTNFRVLIIYLEENHFKMESKVYSIPQDIMTGSGTQLFDHIAECLADFMRDNDV 125 (142)
Q Consensus 64 ~fLalDlGGTnlRv~~V~Lg~~~~~~~~~~~~ip~~~~~~~~~~lFd~ia~~i~~fl~~~~~ 125 (142)
-||.||-|||..|+.+-+.+++ +.-+-..=|.++.....++=+.-|.+.|.+.+.+.+.
T Consensus 6 ~~lGVDGGGTkt~a~l~~~~g~---vlg~g~sGpAN~~~~~~e~A~~ni~~ai~~A~~~aG~ 64 (301)
T COG2971 6 YFLGVDGGGTKTRAVLADEDGN---VLGRGKSGPANIQLVGKEEAVRNIKDAIREALDEAGL 64 (301)
T ss_pred EEEEEccCCcceEEEEEcCCCc---EEEEeccCCceecccchHHHHHHHHHHHHHHHHhcCC
Confidence 4899999999999988776322 3344444466666555577788888888888765543
No 69
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=72.98 E-value=9.5 Score=31.04 Aligned_cols=18 Identities=28% Similarity=0.438 Sum_probs=15.7
Q ss_pred EEEEecCCceEEEEEEEe
Q psy6344 65 FLALDLGGTNFRVLIIYL 82 (142)
Q Consensus 65 fLalDlGGTnlRv~~V~L 82 (142)
.++||+|||..+++...-
T Consensus 2 ~iGiDiGgT~~Kiv~~~~ 19 (279)
T TIGR00555 2 RIGIDIGGTLIKVVYEEP 19 (279)
T ss_pred eEEEEeCcceEEEEEEcC
Confidence 589999999999988754
No 70
>COG3734 DgoK 2-keto-3-deoxy-galactonokinase [Carbohydrate transport and metabolism]
Probab=72.53 E-value=3.6 Score=33.81 Aligned_cols=21 Identities=29% Similarity=0.539 Sum_probs=18.1
Q ss_pred cccEEEEecCCceEEEEEEEe
Q psy6344 62 KGKFLALDLGGTNFRVLIIYL 82 (142)
Q Consensus 62 ~G~fLalDlGGTnlRv~~V~L 82 (142)
...|+++|-|.||||+-+++=
T Consensus 4 ~~~~i~iDWGTT~~R~wL~~~ 24 (306)
T COG3734 4 EPAYIAIDWGTTNLRAWLVRG 24 (306)
T ss_pred CceEEEEecCCccEEEEEEcC
Confidence 357999999999999988774
No 71
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=72.27 E-value=16 Score=33.04 Aligned_cols=27 Identities=26% Similarity=0.516 Sum_probs=22.0
Q ss_pred cEEEEecCCceEEEEEEEecCceEEEE
Q psy6344 64 KFLALDLGGTNFRVLIIYLEENHFKME 90 (142)
Q Consensus 64 ~fLalDlGGTnlRv~~V~Lg~~~~~~~ 90 (142)
.+|.+|+||.++-|.++++.++.+++.
T Consensus 227 ~vlV~DlGgGT~DvSv~~~~~g~~~v~ 253 (663)
T PTZ00400 227 TIAVYDLGGGTFDISILEILGGVFEVK 253 (663)
T ss_pred EEEEEeCCCCeEEEEEEEecCCeeEEE
Confidence 689999999999999999944455444
No 72
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=72.20 E-value=3.1 Score=34.46 Aligned_cols=21 Identities=24% Similarity=0.284 Sum_probs=18.4
Q ss_pred cccEEEEecCCceEEEEEEEe
Q psy6344 62 KGKFLALDLGGTNFRVLIIYL 82 (142)
Q Consensus 62 ~G~fLalDlGGTnlRv~~V~L 82 (142)
.+..|.+|+|||+..|+.|.=
T Consensus 127 ~~~~I~~DmGGTTtDi~~i~~ 147 (318)
T TIGR03123 127 IPECLFVDMGSTTTDIIPIID 147 (318)
T ss_pred CCCEEEEEcCccceeeEEecC
Confidence 567899999999999998853
No 73
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=70.37 E-value=15 Score=32.39 Aligned_cols=72 Identities=18% Similarity=0.330 Sum_probs=47.7
Q ss_pred ccEEEEecCCceEEEEEEEecCceEEEEE----EEeecCCCccCCChhHHHHHHHHHHHHHhhhcCCC-CCccceEEE
Q psy6344 63 GKFLALDLGGTNFRVLIIYLEENHFKMES----KVYSIPQDIMTGSGTQLFDHIAECLADFMRDNDVA-SERLPLGFT 135 (142)
Q Consensus 63 G~fLalDlGGTnlRv~~V~Lg~~~~~~~~----~~~~ip~~~~~~~~~~lFd~ia~~i~~fl~~~~~~-~~~l~lGfT 135 (142)
+-.+|||-|-|+-|+.+..-.++.+...+ +.|+-|.-+. .++.+++.-...++.+.+.+.+.. .+.--+|+|
T Consensus 5 ~yIlAiDqGTTssRaivfd~~g~iva~~q~e~~Q~yP~~GWVE-hDp~eIw~~~~~~l~~a~~~~~i~~~~iaaIGIT 81 (499)
T COG0554 5 KYILAIDQGTTSSRAIVFDEDGNIVAIAQREFTQIYPQPGWVE-HDPLEIWASVRSVLKEALAKAGIKPGEIAAIGIT 81 (499)
T ss_pred cEEEEEecCCcceeEEEECCCCCchhhhhhhhhhhCCCCCccc-cCHHHHHHHHHHHHHHHHHHcCCCccceEEEEee
Confidence 45689999999999988876222222222 3345555554 457999999999999987765432 223445655
No 74
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=69.78 E-value=13 Score=31.17 Aligned_cols=55 Identities=11% Similarity=0.276 Sum_probs=33.8
Q ss_pred EEEEecCCceEEEEEEEecCceEEEEEEEeecC-CCccCCChhHHHHHHH---HHHHHHhhhcC
Q psy6344 65 FLALDLGGTNFRVLIIYLEENHFKMESKVYSIP-QDIMTGSGTQLFDHIA---ECLADFMRDND 124 (142)
Q Consensus 65 fLalDlGGTnlRv~~V~Lg~~~~~~~~~~~~ip-~~~~~~~~~~lFd~ia---~~i~~fl~~~~ 124 (142)
.|+|..|||+.|+++++-.+. +.++...-+ +++. ..+..-|.++ +.|.+++++++
T Consensus 2 il~in~Gsts~k~alf~~~~~---~~~~~~~~~~~~~~--~~~~~~~q~~~r~~~i~~~l~~~~ 60 (351)
T TIGR02707 2 ILVINPGSTSTKLAVFEDERP---LFEETLRHSVEELG--RFKNVIDQFEFRKQVILQFLEEHG 60 (351)
T ss_pred EEEEecCchhheEEEEeCCCc---eeeeeecCCHHHhc--ccccHHHHHHHHHHHHHHHHHHcC
Confidence 699999999999999876222 222222222 2222 2335566666 77778787654
No 75
>PRK13324 pantothenate kinase; Reviewed
Probab=66.65 E-value=27 Score=27.95 Aligned_cols=47 Identities=11% Similarity=0.256 Sum_probs=28.1
Q ss_pred EEEEecCCceEEEEEEEecCceEEEEEEEeecCCCccCCChhHHHHHHHHHH
Q psy6344 65 FLALDLGGTNFRVLIIYLEENHFKMESKVYSIPQDIMTGSGTQLFDHIAECL 116 (142)
Q Consensus 65 fLalDlGGTnlRv~~V~Lg~~~~~~~~~~~~ip~~~~~~~~~~lFd~ia~~i 116 (142)
.|+||+|=||.+.++.+ ++ +. ...|+++..-...+.++++-++...+
T Consensus 2 iL~iDiGNT~ik~gl~~-~~-~~---~~~~r~~t~~~~~t~de~~~~l~~~~ 48 (258)
T PRK13324 2 LLVMDMGNSHIHIGVFD-GD-RI---VSQIRYATSSVDSTSDQMGVFLRQAL 48 (258)
T ss_pred EEEEEeCCCceEEEEEE-CC-EE---EEEEEEecCccccchHHHHHHHHHHH
Confidence 58999999999999887 33 21 12355554222234455555555444
No 76
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=65.22 E-value=33 Score=27.03 Aligned_cols=45 Identities=13% Similarity=0.291 Sum_probs=28.5
Q ss_pred EEEecCCceEEEEEEEecCceEEEEEEEeecCCCccCCChhHHHHHHHHHH
Q psy6344 66 LALDLGGTNFRVLIIYLEENHFKMESKVYSIPQDIMTGSGTQLFDHIAECL 116 (142)
Q Consensus 66 LalDlGGTnlRv~~V~Lg~~~~~~~~~~~~ip~~~~~~~~~~lFd~ia~~i 116 (142)
|+||+|=||+++++.+ ++ + +. ..|+++-+... +.+++..++...+
T Consensus 2 L~iDiGNT~i~~g~~~-~~-~--~~-~~~r~~t~~~~-t~de~~~~l~~~~ 46 (243)
T TIGR00671 2 LLIDVGNTRIVFALNS-GN-K--VY-QFWRLATNLMK-TYDEHSEFLKELF 46 (243)
T ss_pred EEEEECCCcEEEEEEE-CC-E--EE-EEEEecCCCcc-ChHHHHHHHHHHH
Confidence 8999999999999887 33 2 22 24777654432 3556555544443
No 77
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=64.73 E-value=7.1 Score=31.55 Aligned_cols=18 Identities=28% Similarity=0.575 Sum_probs=14.7
Q ss_pred cEEEEecCCceEEEEEEE
Q psy6344 64 KFLALDLGGTNFRVLIIY 81 (142)
Q Consensus 64 ~fLalDlGGTnlRv~~V~ 81 (142)
..|++|+|||+.-|++|.
T Consensus 78 ~~i~vDmGGTTtDi~~i~ 95 (290)
T PF01968_consen 78 NAIVVDMGGTTTDIALIK 95 (290)
T ss_dssp SEEEEEE-SS-EEEEEEE
T ss_pred CEEEEeCCCCEEEEEEEE
Confidence 589999999999999986
No 78
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=61.31 E-value=57 Score=23.68 Aligned_cols=26 Identities=23% Similarity=0.277 Sum_probs=20.3
Q ss_pred cEEEEecCCceEEEEEEEecCceEEE
Q psy6344 64 KFLALDLGGTNFRVLIIYLEENHFKM 89 (142)
Q Consensus 64 ~fLalDlGGTnlRv~~V~Lg~~~~~~ 89 (142)
+.|+||.|-+|+=.++++..++.+++
T Consensus 1 rILGIDPGl~~~G~av~~~~~~~~~~ 26 (154)
T cd00529 1 RILGIDPGSRNTGYGVIEQEGRKLIY 26 (154)
T ss_pred CEEEEccCcCceEEEEEEeeCCeEEE
Confidence 46999999999999999983344443
No 79
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=60.69 E-value=8.2 Score=35.21 Aligned_cols=62 Identities=23% Similarity=0.407 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCcccceeccc--------cccCCC------------------CCccccEEEEecCC
Q psy6344 19 EQLREVMSKLLLAINKGLDKNTNKEAVVKCFPTY--------VQDLPN------------------GKEKGKFLALDLGG 72 (142)
Q Consensus 19 ~~L~~i~~~f~~em~~gL~~~~~~~s~~~Mlps~--------v~~~P~------------------G~E~G~fLalDlGG 72 (142)
..|..+.+++.+.+++.|...+- +..+.|+-|. ....|. |...|..+++|+||
T Consensus 209 A~L~pi~~~yl~~v~~~l~~~g~-~~~l~~m~sdGgl~~~~~a~~~pv~tI~SGPAagvvGAa~ltg~~~g~~i~~DmGG 287 (674)
T COG0145 209 AYLSPILRRYLEAVKDALKERGI-KARLMVMQSDGGLVSAEEAREKPVETILSGPAAGVVGAAYLTGLKAGNAIVFDMGG 287 (674)
T ss_pred eeehHHHHHHHHHHHHHHHhcCC-CceeEEEecCCccccHHHHhcCCeeeEeeccHHHHHHHHHhcccccCCEEEEEcCC
Confidence 45677788888888887765431 1233333211 111222 55556799999999
Q ss_pred ceEEEEEEE
Q psy6344 73 TNFRVLIIY 81 (142)
Q Consensus 73 TnlRv~~V~ 81 (142)
|+.-|+++.
T Consensus 288 TStDva~i~ 296 (674)
T COG0145 288 TSTDVALII 296 (674)
T ss_pred cceeeeeee
Confidence 999999987
No 80
>PRK10753 transcriptional regulator HU subunit alpha; Provisional
Probab=60.15 E-value=23 Score=23.60 Aligned_cols=39 Identities=23% Similarity=0.244 Sum_probs=34.0
Q ss_pred CchHHHHHHhcccCccCHHHHHHHHHHHHHHHHHhhccC
Q psy6344 1 MSVRGKIREHCKDLVLSDEQLREVMSKLLLAINKGLDKN 39 (142)
Q Consensus 1 ~~~~~~~~~~~~~f~l~~~~L~~i~~~f~~em~~gL~~~ 39 (142)
|+-..-++.+.+...++..+...+.+.|.+.|...|...
T Consensus 1 M~K~eli~~ia~~~~~s~~~~~~~v~~~~~~i~~~L~~g 39 (90)
T PRK10753 1 MNKTQLIDVIADKAELSKTQAKAALESTLAAITESLKEG 39 (90)
T ss_pred CCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 666677788888888999999999999999999999863
No 81
>PF09907 DUF2136: Uncharacterized protein conserved in bacteria (DUF2136); InterPro: IPR018669 HigB (YgjN) is the toxin of the HigB-HigA toxin-antitoxin system, acting as a translation-dependent mRNA interferase. HigB inhibits protein synthesis by cleaving translated mRNAs within the coding region []. ; GO: 0016788 hydrolase activity, acting on ester bonds
Probab=60.01 E-value=12 Score=24.46 Aligned_cols=22 Identities=23% Similarity=0.640 Sum_probs=17.0
Q ss_pred ccEEEEecCCceEEEEE-EEecC
Q psy6344 63 GKFLALDLGGTNFRVLI-IYLEE 84 (142)
Q Consensus 63 G~fLalDlGGTnlRv~~-V~Lg~ 84 (142)
+.+.+.|+||.++|+.. |....
T Consensus 36 ~~~~vFnI~GN~yRlI~~I~f~~ 58 (76)
T PF09907_consen 36 NNRVVFNIGGNKYRLIAKIDFER 58 (76)
T ss_pred CCEEEEEcCCCcEEEEEEEEeCc
Confidence 57999999999999854 34433
No 82
>KOG3281|consensus
Probab=59.42 E-value=9.7 Score=30.70 Aligned_cols=33 Identities=24% Similarity=0.614 Sum_probs=26.4
Q ss_pred cccceeccccccCCCCCccccEEEEecCCceEEE
Q psy6344 44 AVVKCFPTYVQDLPNGKEKGKFLALDLGGTNFRV 77 (142)
Q Consensus 44 s~~~Mlps~v~~~P~G~E~G~fLalDlGGTnlRv 77 (142)
|..+|-|.||..+|.| |.|+|+..-|-|+++-+
T Consensus 147 srAr~~P~FvlpLPR~-e~~ef~~~qF~~~hl~f 179 (273)
T KOG3281|consen 147 SRARMYPYFVLPLPRG-EGGEFFQWQFPAPHLHF 179 (273)
T ss_pred HHhhcCCeeeeccccc-cCceEEEEEccCCeeEe
Confidence 4568899999988866 56789999999995544
No 83
>PF11215 DUF3010: Protein of unknown function (DUF3010); InterPro: IPR021378 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=59.00 E-value=44 Score=24.53 Aligned_cols=54 Identities=17% Similarity=0.292 Sum_probs=34.7
Q ss_pred EEEEecCCceEEEEEEEecCceE---EEEEEEeecCCCccCCChhHHHHHHHHHHHH
Q psy6344 65 FLALDLGGTNFRVLIIYLEENHF---KMESKVYSIPQDIMTGSGTQLFDHIAECLAD 118 (142)
Q Consensus 65 fLalDlGGTnlRv~~V~Lg~~~~---~~~~~~~~ip~~~~~~~~~~lFd~ia~~i~~ 118 (142)
..++++=|+..++|++.+.++.+ ..+.+++.+++.-...+-.+|..-++..+.+
T Consensus 3 vCGVELkgneaii~ll~~~~~~~~~pdcr~~k~~l~~~~~~~~vr~Fq~~f~kl~~d 59 (138)
T PF11215_consen 3 VCGVELKGNEAIICLLSLDDGLFQLPDCRVRKFSLSDDNSTEEVRKFQFTFAKLMED 59 (138)
T ss_pred EEEEEEecCeEEEEEEecCCCceECCccceeEEEcCCCccHHHHHHHHHHHHHHHHH
Confidence 46789999999999999944444 3567888888764433333444444443333
No 84
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=58.62 E-value=24 Score=24.44 Aligned_cols=18 Identities=22% Similarity=0.403 Sum_probs=15.3
Q ss_pred EEEEecCCceEEEEEEEe
Q psy6344 65 FLALDLGGTNFRVLIIYL 82 (142)
Q Consensus 65 fLalDlGGTnlRv~~V~L 82 (142)
+.+||+|+++.++++.+.
T Consensus 1 i~~iDiGs~~~~~~i~~~ 18 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAED 18 (120)
T ss_dssp EEEEEE-SSSEEEEEEET
T ss_pred CEEEEcCCCcEEEEEEEe
Confidence 468999999999999887
No 85
>TIGR00987 himA integration host factor, alpha subunit. This protein forms a site-specific DNA-binding heterodimer with the integration host factor beta subunit. It is closely related to the DNA-binding protein HU.
Probab=58.55 E-value=23 Score=23.67 Aligned_cols=39 Identities=15% Similarity=0.249 Sum_probs=34.2
Q ss_pred CchHHHHHHhcccCccCHHHHHHHHHHHHHHHHHhhccC
Q psy6344 1 MSVRGKIREHCKDLVLSDEQLREVMSKLLLAINKGLDKN 39 (142)
Q Consensus 1 ~~~~~~~~~~~~~f~l~~~~L~~i~~~f~~em~~gL~~~ 39 (142)
|+...-++.+.+...++..+...+.+.|.+.|...|...
T Consensus 2 mtk~eli~~ia~~~~~s~~~v~~vv~~~~~~i~~~L~~g 40 (96)
T TIGR00987 2 LTKAEMSEYLFDELGLSKREAKELVELFFEEIRRALENG 40 (96)
T ss_pred CCHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHcC
Confidence 667777788888888999999999999999999999763
No 86
>PRK13320 pantothenate kinase; Reviewed
Probab=58.04 E-value=11 Score=29.71 Aligned_cols=17 Identities=24% Similarity=0.468 Sum_probs=16.1
Q ss_pred EEEEecCCceEEEEEEE
Q psy6344 65 FLALDLGGTNFRVLIIY 81 (142)
Q Consensus 65 fLalDlGGTnlRv~~V~ 81 (142)
+|+||+|-|+++.++++
T Consensus 4 ~L~iDiGNT~ik~~~~~ 20 (244)
T PRK13320 4 NLVIDIGNTTTKLAVFE 20 (244)
T ss_pred EEEEEeCCCcEEEEEEE
Confidence 79999999999999887
No 87
>PRK10664 transcriptional regulator HU subunit beta; Provisional
Probab=57.19 E-value=28 Score=23.21 Aligned_cols=39 Identities=10% Similarity=0.193 Sum_probs=34.5
Q ss_pred CchHHHHHHhcccCccCHHHHHHHHHHHHHHHHHhhccC
Q psy6344 1 MSVRGKIREHCKDLVLSDEQLREVMSKLLLAINKGLDKN 39 (142)
Q Consensus 1 ~~~~~~~~~~~~~f~l~~~~L~~i~~~f~~em~~gL~~~ 39 (142)
|+-..-++.+.+...++..+...+.+.|.+.+...|...
T Consensus 1 MtK~eli~~ia~~~~~s~~~~~~~v~~~~~~i~~~L~~~ 39 (90)
T PRK10664 1 MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEG 39 (90)
T ss_pred CCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence 666777888888888999999999999999999999864
No 88
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=56.08 E-value=15 Score=33.27 Aligned_cols=34 Identities=24% Similarity=0.225 Sum_probs=23.7
Q ss_pred cccceeccccccCCCCCccccEEEEecCCceEEEEEEE
Q psy6344 44 AVVKCFPTYVQDLPNGKEKGKFLALDLGGTNFRVLIIY 81 (142)
Q Consensus 44 s~~~Mlps~v~~~P~G~E~G~fLalDlGGTnlRv~~V~ 81 (142)
++...+-+++. +.-.|.+++||||.||-.|+.++
T Consensus 12 ~~~~~~~~~~~----~~~~~~viGIDLGTTnS~vA~~~ 45 (657)
T PTZ00186 12 ASAARLARHES----QKVQGDVIGVDLGTTYSCVATMD 45 (657)
T ss_pred hhccccccccc----CcccceEEEEEeCcCeEEEEEEe
Confidence 34445555553 22245799999999999998875
No 89
>smart00411 BHL bacterial (prokaryotic) histone like domain.
Probab=55.54 E-value=31 Score=22.37 Aligned_cols=38 Identities=21% Similarity=0.253 Sum_probs=34.1
Q ss_pred CchHHHHHHhcccCccCHHHHHHHHHHHHHHHHHhhcc
Q psy6344 1 MSVRGKIREHCKDLVLSDEQLREVMSKLLLAINKGLDK 38 (142)
Q Consensus 1 ~~~~~~~~~~~~~f~l~~~~L~~i~~~f~~em~~gL~~ 38 (142)
|+...-++++.+...++..+...+.+.|.+.|.+.|..
T Consensus 1 mtk~eli~~ia~~~~~~~~~v~~vl~~l~~~i~~~L~~ 38 (90)
T smart00411 1 MTKSELIDAIAEKAGLSKKDAKAAVDAFLEIITEALKK 38 (90)
T ss_pred CCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 67777788888888899999999999999999999986
No 90
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []. RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.
Probab=55.53 E-value=77 Score=23.00 Aligned_cols=55 Identities=11% Similarity=0.248 Sum_probs=28.3
Q ss_pred EEEEecCCceEEEEEEEecCceEEE-EEEEeecCCCccC-CChhHHHHHHHHHHHHH
Q psy6344 65 FLALDLGGTNFRVLIIYLEENHFKM-ESKVYSIPQDIMT-GSGTQLFDHIAECLADF 119 (142)
Q Consensus 65 fLalDlGGTnlRv~~V~Lg~~~~~~-~~~~~~ip~~~~~-~~~~~lFd~ia~~i~~f 119 (142)
.|.||-|-++.-.++|+..++..+. ..-....+..... ..-.++++++.+.|.+|
T Consensus 1 ILGIDPgl~~tG~avi~~~~~~~~~i~~G~I~t~~~~~~~~Rl~~I~~~l~~li~~~ 57 (149)
T PF02075_consen 1 ILGIDPGLSNTGYAVIEEDGGKLRLIDYGTIKTSSKDSLPERLKEIYEELEELIEEY 57 (149)
T ss_dssp EEEEE--SSEEEEEEEEEETTEEEEEEEEEEE---S--HHHHHHHHHHHHHHHHHHH
T ss_pred CEEECCCCCCeeEEEEEeeCCEEEEEEeCeEECCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 3899999999999999994334433 2333333332111 11245566666655554
No 91
>PRK13317 pantothenate kinase; Provisional
Probab=55.18 E-value=12 Score=30.20 Aligned_cols=19 Identities=21% Similarity=0.345 Sum_probs=16.4
Q ss_pred cEEEEecCCceEEEEEEEe
Q psy6344 64 KFLALDLGGTNFRVLIIYL 82 (142)
Q Consensus 64 ~fLalDlGGTnlRv~~V~L 82 (142)
-.+.||+|||..+++.++=
T Consensus 3 ~~iGIDiGstt~K~v~~~~ 21 (277)
T PRK13317 3 MKIGIDAGGTLTKIVYLEE 21 (277)
T ss_pred ceEEEEeCcccEEEEEEcC
Confidence 4689999999999988764
No 92
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=54.98 E-value=20 Score=31.96 Aligned_cols=31 Identities=26% Similarity=0.357 Sum_probs=22.8
Q ss_pred CCCCCccccEEEEecCCceEEEEEEEe-cCce
Q psy6344 56 LPNGKEKGKFLALDLGGTNFRVLIIYL-EENH 86 (142)
Q Consensus 56 ~P~G~E~G~fLalDlGGTnlRv~~V~L-g~~~ 86 (142)
.|-+.+.--=+|+|+|.|.+|..+|.| .++.
T Consensus 157 ~pg~~~~~YGvAvDlGTS~i~aqlVDL~sgev 188 (614)
T COG3894 157 WPGLKNEAYGVAVDLGTSGIRAQLVDLKSGEV 188 (614)
T ss_pred ccCccceeeeeEEecccceeeeEEEeccCCcE
Confidence 354444333389999999999999999 5543
No 93
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=54.80 E-value=12 Score=31.09 Aligned_cols=17 Identities=29% Similarity=0.516 Sum_probs=14.4
Q ss_pred EEEecCCceEEEEEEEe
Q psy6344 66 LALDLGGTNFRVLIIYL 82 (142)
Q Consensus 66 LalDlGGTnlRv~~V~L 82 (142)
+.+|+||-|+++++++=
T Consensus 1 ~G~DiGGA~~K~a~~~~ 17 (318)
T TIGR03123 1 LGIDIGGANTKAAELDE 17 (318)
T ss_pred CccccccceeeeEEecC
Confidence 46899999999997764
No 94
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=51.92 E-value=88 Score=23.22 Aligned_cols=56 Identities=21% Similarity=0.353 Sum_probs=33.0
Q ss_pred cEEEEecCCceEEEEEEEecCceEEE-EEEEeecCCCcc-CCChhHHHHHHHHHHHHH
Q psy6344 64 KFLALDLGGTNFRVLIIYLEENHFKM-ESKVYSIPQDIM-TGSGTQLFDHIAECLADF 119 (142)
Q Consensus 64 ~fLalDlGGTnlRv~~V~Lg~~~~~~-~~~~~~ip~~~~-~~~~~~lFd~ia~~i~~f 119 (142)
+.|+||-|-++.=.++|+..+..+.. ..-..+.+.... ...-.+++++|.+.|.++
T Consensus 3 ~iLGIDPgl~~tG~avi~~~~~~~~~~~~G~i~t~~~~~~~~Rl~~I~~~l~~~i~~~ 60 (164)
T PRK00039 3 RILGIDPGLRRTGYGVIEVEGRRLSYVASGVIRTPSDLDLPERLKQIYDGLSELIDEY 60 (164)
T ss_pred EEEEEccccCceeEEEEEecCCeEEEEEeeEEECCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 47999999999999999883233332 222333443211 112356677776666554
No 95
>PRK13410 molecular chaperone DnaK; Provisional
Probab=50.93 E-value=15 Score=33.25 Aligned_cols=20 Identities=35% Similarity=0.531 Sum_probs=17.4
Q ss_pred ccEEEEecCCceEEEEEEEe
Q psy6344 63 GKFLALDLGGTNFRVLIIYL 82 (142)
Q Consensus 63 G~fLalDlGGTnlRv~~V~L 82 (142)
|..++||||.||-.|+.++=
T Consensus 2 ~~viGIDlGTt~s~va~~~~ 21 (668)
T PRK13410 2 GRIVGIDLGTTNSVVAVMEG 21 (668)
T ss_pred CcEEEEEeCCCcEEEEEEEC
Confidence 46799999999999998863
No 96
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=50.38 E-value=14 Score=31.73 Aligned_cols=23 Identities=22% Similarity=0.469 Sum_probs=19.5
Q ss_pred CCccccEEEEecCCceEEEEEEE
Q psy6344 59 GKEKGKFLALDLGGTNFRVLIIY 81 (142)
Q Consensus 59 G~E~G~fLalDlGGTnlRv~~V~ 81 (142)
+...|-|+.||.|+|+.++++++
T Consensus 140 ~~~~g~~lGIDiGSTttK~Vl~d 162 (404)
T TIGR03286 140 ERQEGLTLGIDSGSTTTKAVVME 162 (404)
T ss_pred hccCCEEEEEEcChhheeeEEEc
Confidence 34567799999999999998876
No 97
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=50.29 E-value=16 Score=32.61 Aligned_cols=18 Identities=39% Similarity=0.573 Sum_probs=16.3
Q ss_pred cEEEEecCCceEEEEEEE
Q psy6344 64 KFLALDLGGTNFRVLIIY 81 (142)
Q Consensus 64 ~fLalDlGGTnlRv~~V~ 81 (142)
..++||||.||..|+.++
T Consensus 3 ~viGIDlGTt~s~va~~~ 20 (627)
T PRK00290 3 KIIGIDLGTTNSCVAVME 20 (627)
T ss_pred cEEEEEeCcccEEEEEEE
Confidence 479999999999999886
No 98
>PF05402 PqqD: Coenzyme PQQ synthesis protein D (PqqD); InterPro: IPR008792 This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.; PDB: 3G2B_A.
Probab=49.79 E-value=38 Score=20.65 Aligned_cols=33 Identities=12% Similarity=0.223 Sum_probs=25.0
Q ss_pred chHHHHHHhcccCccCHHHHHHHHHHHHHHHHH
Q psy6344 2 SVRGKIREHCKDLVLSDEQLREVMSKLLLAINK 34 (142)
Q Consensus 2 ~~~~~~~~~~~~f~l~~~~L~~i~~~f~~em~~ 34 (142)
|+...++.+.+.|.++.++++.=...|.+++.+
T Consensus 31 t~~ei~~~l~~~y~~~~~~~~~dv~~fl~~L~~ 63 (68)
T PF05402_consen 31 TVEEIVDALAEEYDVDPEEAEEDVEEFLEQLRE 63 (68)
T ss_dssp -HHHHHHHHHHHTT--HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 566778888999999999998888888888764
No 99
>PRK13326 pantothenate kinase; Reviewed
Probab=49.71 E-value=66 Score=25.75 Aligned_cols=18 Identities=22% Similarity=0.392 Sum_probs=16.2
Q ss_pred cEEEEecCCceEEEEEEE
Q psy6344 64 KFLALDLGGTNFRVLIIY 81 (142)
Q Consensus 64 ~fLalDlGGTnlRv~~V~ 81 (142)
-.|+||+|=||.++++.+
T Consensus 7 ~~L~IDiGNT~ik~glf~ 24 (262)
T PRK13326 7 SQLIIDIGNTSISFALYK 24 (262)
T ss_pred EEEEEEeCCCeEEEEEEE
Confidence 469999999999998887
No 100
>PRK00199 ihfB integration host factor subunit beta; Reviewed
Probab=48.74 E-value=47 Score=21.97 Aligned_cols=39 Identities=15% Similarity=0.247 Sum_probs=32.1
Q ss_pred CchHHHHHHhccc-CccCHHHHHHHHHHHHHHHHHhhccC
Q psy6344 1 MSVRGKIREHCKD-LVLSDEQLREVMSKLLLAINKGLDKN 39 (142)
Q Consensus 1 ~~~~~~~~~~~~~-f~l~~~~L~~i~~~f~~em~~gL~~~ 39 (142)
|+-..-++.+.+. -.++..+...+.+.|.++|.+.|...
T Consensus 1 mtk~eli~~ia~~~~~~s~~~~~~vv~~~~~~i~~~L~~g 40 (94)
T PRK00199 1 MTKSELIERLAARNPHLSAKDVENAVKEILEEMSDALARG 40 (94)
T ss_pred CCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 5666666777664 46999999999999999999999863
No 101
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=48.74 E-value=18 Score=32.63 Aligned_cols=19 Identities=32% Similarity=0.322 Sum_probs=16.5
Q ss_pred ccEEEEecCCceEEEEEEE
Q psy6344 63 GKFLALDLGGTNFRVLIIY 81 (142)
Q Consensus 63 G~fLalDlGGTnlRv~~V~ 81 (142)
+..++||||.||..|+.++
T Consensus 4 ~~~iGIDlGTt~s~va~~~ 22 (653)
T PTZ00009 4 GPAIGIDLGTTYSCVGVWK 22 (653)
T ss_pred ccEEEEEeCcccEEEEEEe
Confidence 3579999999999999875
No 102
>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This entry represents the type III pantothenate kinase family, such as that found in Helicobacter pylori. PanK III enzymes have a much wider phylogenic distribution than PanK I, and differs significantly in biochemical activity. PanK III enzymes are are not feedback inhibited by CoA concentration (which is also the case for PanK II enzymes), and PanK III enzymes have an unusually high Km for ATP []. ; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 2GTD_E 3BF1_F 3BEX_D 3BF3_F 2NRH_B 2H3G_X 3DJC_J 2F9T_A 2F9W_A.
Probab=48.32 E-value=22 Score=27.00 Aligned_cols=17 Identities=24% Similarity=0.487 Sum_probs=14.8
Q ss_pred EEEEecCCceEEEEEEE
Q psy6344 65 FLALDLGGTNFRVLIIY 81 (142)
Q Consensus 65 fLalDlGGTnlRv~~V~ 81 (142)
+|+||+|=|++++++.+
T Consensus 1 ~L~iDiGNT~ik~~~~~ 17 (206)
T PF03309_consen 1 ILLIDIGNTRIKWALFD 17 (206)
T ss_dssp EEEEEE-SSEEEEEEEE
T ss_pred CEEEEECCCeEEEEEEE
Confidence 68999999999999986
No 103
>PRK00285 ihfA integration host factor subunit alpha; Reviewed
Probab=48.29 E-value=41 Score=22.48 Aligned_cols=39 Identities=13% Similarity=0.232 Sum_probs=33.2
Q ss_pred CchHHHHHHhcccCccCHHHHHHHHHHHHHHHHHhhccC
Q psy6344 1 MSVRGKIREHCKDLVLSDEQLREVMSKLLLAINKGLDKN 39 (142)
Q Consensus 1 ~~~~~~~~~~~~~f~l~~~~L~~i~~~f~~em~~gL~~~ 39 (142)
|+...-++.+.+...++..+...+.+.|.+.|...|...
T Consensus 3 mtk~el~~~ia~~~~~s~~~v~~vl~~~~~~i~~~L~~g 41 (99)
T PRK00285 3 LTKADLAEALFEKVGLSKREAKELVELFFEEIRDALENG 41 (99)
T ss_pred cCHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHcC
Confidence 456666777777888999999999999999999999863
No 104
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=47.09 E-value=19 Score=31.40 Aligned_cols=17 Identities=35% Similarity=0.604 Sum_probs=14.0
Q ss_pred EEEEecCCceEEEEEEE
Q psy6344 65 FLALDLGGTNFRVLIIY 81 (142)
Q Consensus 65 fLalDlGGTnlRv~~V~ 81 (142)
.++||||.||.+|+.+.
T Consensus 1 viGID~Gt~~~~va~~~ 17 (602)
T PF00012_consen 1 VIGIDLGTTNSKVAVFK 17 (602)
T ss_dssp EEEEEE-SSEEEEEEEE
T ss_pred CEEEEeccCCEEEEEEE
Confidence 37999999999999875
No 105
>PRK13411 molecular chaperone DnaK; Provisional
Probab=47.01 E-value=19 Score=32.41 Aligned_cols=19 Identities=42% Similarity=0.648 Sum_probs=16.7
Q ss_pred ccEEEEecCCceEEEEEEE
Q psy6344 63 GKFLALDLGGTNFRVLIIY 81 (142)
Q Consensus 63 G~fLalDlGGTnlRv~~V~ 81 (142)
+..++||||.||-.|+.++
T Consensus 2 ~~viGIDlGTt~s~va~~~ 20 (653)
T PRK13411 2 GKVIGIDLGTTNSCVAVLE 20 (653)
T ss_pred CcEEEEEeCcccEEEEEEE
Confidence 3579999999999999875
No 106
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=46.94 E-value=20 Score=32.09 Aligned_cols=19 Identities=32% Similarity=0.319 Sum_probs=16.6
Q ss_pred ccEEEEecCCceEEEEEEE
Q psy6344 63 GKFLALDLGGTNFRVLIIY 81 (142)
Q Consensus 63 G~fLalDlGGTnlRv~~V~ 81 (142)
...++||||.||-.|+.++
T Consensus 19 ~~~iGIDlGTt~s~va~~~ 37 (616)
T PRK05183 19 RLAVGIDLGTTNSLVATVR 37 (616)
T ss_pred CeEEEEEeccccEEEEEEE
Confidence 3579999999999999874
No 107
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=46.71 E-value=19 Score=32.57 Aligned_cols=19 Identities=42% Similarity=0.609 Sum_probs=16.8
Q ss_pred ccEEEEecCCceEEEEEEE
Q psy6344 63 GKFLALDLGGTNFRVLIIY 81 (142)
Q Consensus 63 G~fLalDlGGTnlRv~~V~ 81 (142)
|..++||||.||..|+.++
T Consensus 41 ~~viGIDlGTt~s~va~~~ 59 (663)
T PTZ00400 41 GDIVGIDLGTTNSCVAIME 59 (663)
T ss_pred CcEEEEEECcccEEEEEEe
Confidence 4589999999999999875
No 108
>PF00216 Bac_DNA_binding: Bacterial DNA-binding protein; InterPro: IPR000119 Bacteria synthesise a set of small, usually basic proteins of about 90 residues that bind DNA and are known as histone-like proteins [, ]. Examples include the HU protein in Escherichia coli is a dimer of closely related alpha and beta chains and in other bacteria can be a dimer of identical chains. HU-type proteins have been found in a variety of eubacteria, cyanobacteria and archaebacteria, and are also encoded in the chloroplast genome of some algae []. The integration host factor (IHF), a dimer of closely related chains which seem to function in genetic recombination as well as in translational and transcriptional control [] is found in enterobacteria and viral proteins include the African Swine fever virus protein A104R (or LMW5-AR) []. The exact function of these proteins is not yet clear but they are capable of wrapping DNA and stabilising it from denaturation under extreme environmental conditions. The structure is known for one of these proteins []. The protein exists as a dimer and two "beta-arms" function as the non-specific binding site for bacterial DNA. ; GO: 0003677 DNA binding; PDB: 3C4I_B 2O97_A 1MUL_A 1P78_A 1P51_C 1P71_B 2HT0_A 1OWG_A 2IIF_A 1OUZ_A ....
Probab=46.42 E-value=31 Score=22.23 Aligned_cols=39 Identities=21% Similarity=0.330 Sum_probs=33.4
Q ss_pred CchHHHHHHhcccCccCHHHHHHHHHHHHHHHHHhhccC
Q psy6344 1 MSVRGKIREHCKDLVLSDEQLREVMSKLLLAINKGLDKN 39 (142)
Q Consensus 1 ~~~~~~~~~~~~~f~l~~~~L~~i~~~f~~em~~gL~~~ 39 (142)
|+-..-++.+.+.-.++..+...+.+.|.+.|...|...
T Consensus 1 Mtk~eli~~ia~~~~~s~~~v~~vl~~~~~~i~~~L~~g 39 (90)
T PF00216_consen 1 MTKKELIKRIAEKTGLSKKDVEAVLDALFDVIKEALKEG 39 (90)
T ss_dssp EBHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 566677777777778999999999999999999999753
No 109
>PRK11678 putative chaperone; Provisional
Probab=45.06 E-value=30 Score=29.85 Aligned_cols=20 Identities=20% Similarity=0.521 Sum_probs=18.6
Q ss_pred ccEEEEecCCceEEEEEEEe
Q psy6344 63 GKFLALDLGGTNFRVLIIYL 82 (142)
Q Consensus 63 G~fLalDlGGTnlRv~~V~L 82 (142)
..+|++||||.++=+.+|++
T Consensus 209 ~~vlV~D~GGGT~D~Svv~~ 228 (450)
T PRK11678 209 KRVLVVDIGGGTTDCSMLLM 228 (450)
T ss_pred CeEEEEEeCCCeEEEEEEEe
Confidence 46899999999999999999
No 110
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=45.01 E-value=21 Score=31.55 Aligned_cols=17 Identities=35% Similarity=0.544 Sum_probs=15.4
Q ss_pred EEEEecCCceEEEEEEE
Q psy6344 65 FLALDLGGTNFRVLIIY 81 (142)
Q Consensus 65 fLalDlGGTnlRv~~V~ 81 (142)
.++||||.||..|+.++
T Consensus 2 viGIDlGtt~s~va~~~ 18 (595)
T TIGR02350 2 IIGIDLGTTNSCVAVME 18 (595)
T ss_pred EEEEEeCcccEEEEEEE
Confidence 58999999999999876
No 111
>KOG1903|consensus
Probab=44.99 E-value=16 Score=27.88 Aligned_cols=69 Identities=19% Similarity=0.297 Sum_probs=37.1
Q ss_pred eccccccCCCCCccccEEEEecCCceEEEEEE--------------Ee-cCceEEE-E--EEEeecCCCccCCC-hhHHH
Q psy6344 49 FPTYVQDLPNGKEKGKFLALDLGGTNFRVLII--------------YL-EENHFKM-E--SKVYSIPQDIMTGS-GTQLF 109 (142)
Q Consensus 49 lps~v~~~P~G~E~G~fLalDlGGTnlRv~~V--------------~L-g~~~~~~-~--~~~~~ip~~~~~~~-~~~lF 109 (142)
|.+-| .+|.|....+++|+..=---=|+-++ .+ |+.+++- . ..+|+-|..+.... -+-|.
T Consensus 45 Lr~aV-~LPpgEn~nDW~AVHvVDFFNRiNLiYGTise~Cte~sCP~MsGG~rYEY~WqD~~~ykkPt~L~Ap~Ym~lLM 123 (217)
T KOG1903|consen 45 LRSAV-RLPPGENLNDWLAVHVVDFFNRINLIYGTISEFCTETSCPVMSGGPRYEYRWQDERKYKKPTALSAPRYMALLM 123 (217)
T ss_pred hHHhc-cCCCCCCccceeeeehhhhhhhhHhhhhhHhhhccccCCCcccCCCcceeEecccccccCCccCCcHHHHHHHH
Confidence 44445 69999999999987643211122111 11 3333332 2 34667777665433 24467
Q ss_pred HHHHHHHHH
Q psy6344 110 DHIAECLAD 118 (142)
Q Consensus 110 d~ia~~i~~ 118 (142)
|||-..|++
T Consensus 124 DWIE~~INn 132 (217)
T KOG1903|consen 124 DWIEVQINN 132 (217)
T ss_pred HHHHHhccc
Confidence 777666643
No 112
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=44.74 E-value=1.5e+02 Score=23.75 Aligned_cols=57 Identities=19% Similarity=0.352 Sum_probs=34.2
Q ss_pred EEEEecCCceEEEEEEEecCceEEE-E--EEEeecCCCcc-CCC-hhHHHHHHHHHHHHHhh
Q psy6344 65 FLALDLGGTNFRVLIIYLEENHFKM-E--SKVYSIPQDIM-TGS-GTQLFDHIAECLADFMR 121 (142)
Q Consensus 65 fLalDlGGTnlRv~~V~Lg~~~~~~-~--~~~~~ip~~~~-~~~-~~~lFd~ia~~i~~fl~ 121 (142)
|=+||+|-.++|..++++.++.+.. . ....++.+.+- ++. ..+=.+-+.+++.+|..
T Consensus 2 ~AvIDiGSNsirl~I~~~~~~~~~~l~~~~~~vrL~~~~~~~g~i~~e~i~~~~~~l~~f~~ 63 (300)
T TIGR03706 2 IAAIDIGSNSVRLVIARGVEGSLQVLFNEKEMVRLGEGLDSTGRLSEEAIERALEALKRFAE 63 (300)
T ss_pred eEEEEecCCeeeEEEEEecCCcEEEhhheeeeeecCCCCCCCCCcCHHHHHHHHHHHHHHHH
Confidence 4589999999999999992223332 2 23345555442 222 34555566666766653
No 113
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=44.25 E-value=22 Score=26.62 Aligned_cols=17 Identities=24% Similarity=0.483 Sum_probs=15.3
Q ss_pred EEEecCCceEEEEEEEe
Q psy6344 66 LALDLGGTNFRVLIIYL 82 (142)
Q Consensus 66 LalDlGGTnlRv~~V~L 82 (142)
++||.||||-=++++.-
T Consensus 2 igIDvGGT~TD~v~~d~ 18 (176)
T PF05378_consen 2 IGIDVGGTFTDAVLLDE 18 (176)
T ss_pred eeEecCCCcEEEEEEeC
Confidence 68999999999988876
No 114
>CHL00094 dnaK heat shock protein 70
Probab=43.54 E-value=23 Score=31.62 Aligned_cols=18 Identities=39% Similarity=0.541 Sum_probs=16.3
Q ss_pred cEEEEecCCceEEEEEEE
Q psy6344 64 KFLALDLGGTNFRVLIIY 81 (142)
Q Consensus 64 ~fLalDlGGTnlRv~~V~ 81 (142)
..++||||.||..|+.++
T Consensus 3 ~viGIDlGTt~s~va~~~ 20 (621)
T CHL00094 3 KVVGIDLGTTNSVVAVME 20 (621)
T ss_pred ceEEEEeCcccEEEEEEE
Confidence 579999999999999885
No 115
>TIGR00988 hip integration host factor, beta subunit. This protein forms a site-specific DNA-binding heterodimer with the homologous integration host factor alpha subunit. It is closely related to the DNA-binding protein HU.
Probab=43.48 E-value=64 Score=21.24 Aligned_cols=39 Identities=13% Similarity=0.225 Sum_probs=32.0
Q ss_pred CchHHHHHHhcccC-ccCHHHHHHHHHHHHHHHHHhhccC
Q psy6344 1 MSVRGKIREHCKDL-VLSDEQLREVMSKLLLAINKGLDKN 39 (142)
Q Consensus 1 ~~~~~~~~~~~~~f-~l~~~~L~~i~~~f~~em~~gL~~~ 39 (142)
|+-..-++.+.+.. .++..+...+.+.|.++|...|...
T Consensus 1 m~k~eli~~i~~~~~~~s~~~v~~vv~~~~~~i~~~L~~g 40 (94)
T TIGR00988 1 MTKSELIERIATQQSHLPAKDVEDAVKTMLEHMASALAQG 40 (94)
T ss_pred CCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 66666677776654 5899999999999999999999863
No 116
>PRK11538 ribosome-associated protein; Provisional
Probab=43.32 E-value=68 Score=22.14 Aligned_cols=42 Identities=17% Similarity=0.363 Sum_probs=29.0
Q ss_pred cCHHHHHHHHHHHHHHHHHhhccCCCCCcccceeccccccCCCCCccccEEEEecCC
Q psy6344 16 LSDEQLREVMSKLLLAINKGLDKNTNKEAVVKCFPTYVQDLPNGKEKGKFLALDLGG 72 (142)
Q Consensus 16 l~~~~L~~i~~~f~~em~~gL~~~~~~~s~~~Mlps~v~~~P~G~E~G~fLalDlGG 72 (142)
-|.-+++.|++.+.+++++ .+ +.|..+ .|...+..+.+|+|.
T Consensus 43 ~S~rh~~aia~~v~~~~k~----~~-------~~~~~~----eG~~~~~WillD~g~ 84 (105)
T PRK11538 43 TSSRHVMSIADHVVQESRA----AG-------LLPLGV----EGENAADWIVVDLGD 84 (105)
T ss_pred CCHHHHHHHHHHHHHHHHH----cC-------CCCCcc----cCCCCCCEEEEeCCC
Confidence 4778889999888876653 11 123333 477778999999995
No 117
>COG0776 HimA Bacterial nucleoid DNA-binding protein [DNA replication, recombination, and repair]
Probab=42.90 E-value=56 Score=22.29 Aligned_cols=38 Identities=24% Similarity=0.264 Sum_probs=33.6
Q ss_pred CchHHHHHHhcccCccCHHHHHHHHHHHHHHHHHhhcc
Q psy6344 1 MSVRGKIREHCKDLVLSDEQLREVMSKLLLAINKGLDK 38 (142)
Q Consensus 1 ~~~~~~~~~~~~~f~l~~~~L~~i~~~f~~em~~gL~~ 38 (142)
|+-..-++.+.+...++..+...+.+.|.++|...|.+
T Consensus 2 mtKseli~~ia~~~~l~k~~a~~~v~~~~~~i~~aL~~ 39 (94)
T COG0776 2 MTKSELIDAIAEKAGLSKKDAEEAVDAFLEEITEALAK 39 (94)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHc
Confidence 56667788888888899999999999999999999985
No 118
>TIGR02148 Fibro_Slime fibro-slime domain. This model represents a conserved region of about 90 amino acids, shared in at least 4 distinct large putative proteins from the slime mold Dictyostelium discoideum and 10 proteins from the rumen bacterium Fibrobacter succinogenes, and in no other species so far. We propose here the name fibro-slime domain
Probab=42.45 E-value=14 Score=25.16 Aligned_cols=10 Identities=40% Similarity=0.800 Sum_probs=8.7
Q ss_pred EEEecCCceE
Q psy6344 66 LALDLGGTNF 75 (142)
Q Consensus 66 LalDlGGTnl 75 (142)
||+|+||..-
T Consensus 38 Lv~DlGG~H~ 47 (90)
T TIGR02148 38 LVVDIGGQHP 47 (90)
T ss_pred EEEEccCcCC
Confidence 8999999763
No 119
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=42.40 E-value=30 Score=28.21 Aligned_cols=21 Identities=29% Similarity=0.548 Sum_probs=16.1
Q ss_pred ccccEEEEecCCceEEEEEEE
Q psy6344 61 EKGKFLALDLGGTNFRVLIIY 81 (142)
Q Consensus 61 E~G~fLalDlGGTnlRv~~V~ 81 (142)
+....|.||+||+++=++.|+
T Consensus 162 ~~~~~lVVDIGG~T~Dv~~v~ 182 (318)
T PF06406_consen 162 EDESVLVVDIGGRTTDVAVVR 182 (318)
T ss_dssp TTSEEEEEEE-SS-EEEEEEE
T ss_pred ccCcEEEEEcCCCeEEeeeec
Confidence 345789999999999999886
No 120
>PTZ00297 pantothenate kinase; Provisional
Probab=41.18 E-value=73 Score=31.86 Aligned_cols=56 Identities=21% Similarity=0.282 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHhhccCCCCCcccceeccccccCCCC----CccccE------------EEEecCCceEEEEEEEe
Q psy6344 22 REVMSKLLLAINKGLDKNTNKEAVVKCFPTYVQDLPNG----KEKGKF------------LALDLGGTNFRVLIIYL 82 (142)
Q Consensus 22 ~~i~~~f~~em~~gL~~~~~~~s~~~Mlps~v~~~P~G----~E~G~f------------LalDlGGTnlRv~~V~L 82 (142)
..|.+++.+++++=-+.. .+ .-||+.+..+-.. .+.|++ +++|+|||--+++.|.=
T Consensus 987 ~~I~~kY~~~Ie~LY~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1058 (1452)
T PTZ00297 987 DAVHSYFSSVIERFYSDV----ET-TPLPTPCADLQEDVSDVESSGTKLSSDCDFSLQVPVTIDIGGTFAKIAYVQP 1058 (1452)
T ss_pred HHHHHHHHHHHHHHhccc----cc-CCCCCceeecccccchhhcccceecccCCccccCceEEecCceeEEEEEEeC
Confidence 456688888777644421 12 6678776543221 233453 79999999999999876
No 121
>PRK01742 tolB translocation protein TolB; Provisional
Probab=41.16 E-value=71 Score=26.87 Aligned_cols=64 Identities=14% Similarity=0.079 Sum_probs=42.2
Q ss_pred cccCccCHHHHHHHHHHHHHHHHHhhccCCCCCcccceeccccccCCCCCccccEEEEecCCceEEE
Q psy6344 11 CKDLVLSDEQLREVMSKLLLAINKGLDKNTNKEAVVKCFPTYVQDLPNGKEKGKFLALDLGGTNFRV 77 (142)
Q Consensus 11 ~~~f~l~~~~L~~i~~~f~~em~~gL~~~~~~~s~~~Mlps~v~~~P~G~E~G~fLalDlGGTnlRv 77 (142)
-+.+.++.+++..++.+|..++.+.|.+.... ..=--.||...+.+.+..+....|.-|.|.|.
T Consensus 135 ~~~~~~~~~~~r~~ah~~~d~i~~~ltg~~g~---f~~ria~v~~~~~~~~~~~i~i~d~dg~~~~~ 198 (429)
T PRK01742 135 QNSYTVPAKWLRYGAHTVSDEVFEKLTAIRGA---FRTRIAYVVQKNGGSQPYEVRVADYDGFNQFI 198 (429)
T ss_pred eeEEEcCHHHHHHHHHHHHHHHHHHHcCCCCc---cCCEEEEEEEEcCCCceEEEEEECCCCCCceE
Confidence 35677899999999999999999999875421 11112255444444444555666777777554
No 122
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=40.81 E-value=1.6e+02 Score=25.42 Aligned_cols=58 Identities=16% Similarity=0.244 Sum_probs=37.2
Q ss_pred cEEEEecCCceEEEEEEEe-cCceEEEEEEEeecCCCccCCChhHHHHHHHHHHHHHhhh
Q psy6344 64 KFLALDLGGTNFRVLIIYL-EENHFKMESKVYSIPQDIMTGSGTQLFDHIAECLADFMRD 122 (142)
Q Consensus 64 ~fLalDlGGTnlRv~~V~L-g~~~~~~~~~~~~ip~~~~~~~~~~lFd~ia~~i~~fl~~ 122 (142)
-|.+||+|-++..++.-++ .++.+.+.--...-+..++.|.-.+ .|-.++.|++-+++
T Consensus 7 ~iv~LDIGTskV~~lVge~~~~g~i~iig~g~~~SrGik~G~I~d-i~~~~~sI~~av~~ 65 (418)
T COG0849 7 LIVGLDIGTSKVKALVGELRPDGRLNIIGVGSHPSRGIKKGVIVD-LDAAAQSIKKAVEA 65 (418)
T ss_pred eEEEEEccCcEEEEEEEEEcCCCeEEEEeeecccCcccccceEEc-HHHHHHHHHHHHHH
Confidence 5889999999999999999 5554544443333345555554222 35566666665543
No 123
>PF13941 MutL: MutL protein
Probab=40.42 E-value=45 Score=29.08 Aligned_cols=19 Identities=32% Similarity=0.522 Sum_probs=17.8
Q ss_pred cEEEEecCCceEEEEEEEe
Q psy6344 64 KFLALDLGGTNFRVLIIYL 82 (142)
Q Consensus 64 ~fLalDlGGTnlRv~~V~L 82 (142)
.||++|+|.|.-|+.+|++
T Consensus 1 ~~L~~DiGST~Tk~~l~d~ 19 (457)
T PF13941_consen 1 DVLVVDIGSTYTKVTLFDL 19 (457)
T ss_pred CEEEEEeCCcceEEeEEec
Confidence 4899999999999999997
No 124
>COG5146 PanK Pantothenate kinase, acetyl-CoA regulated [Coenzyme metabolism]
Probab=40.37 E-value=57 Score=26.63 Aligned_cols=48 Identities=15% Similarity=0.201 Sum_probs=28.3
Q ss_pred EEEEecCCceEEEEEEEecCceEEEEEEEeecCCCccCCChhHHHHHHHHHHHHHh
Q psy6344 65 FLALDLGGTNFRVLIIYLEENHFKMESKVYSIPQDIMTGSGTQLFDHIAECLADFM 120 (142)
Q Consensus 65 fLalDlGGTnlRv~~V~Lg~~~~~~~~~~~~ip~~~~~~~~~~lFd~ia~~i~~fl 120 (142)
-+|||.|||=.+|..-...+ .+..+.+.++.+ -+++..|++..|.+..
T Consensus 20 ~vaiDiGGtLaKvv~sp~~s-----nrl~F~t~eT~k---Id~~ve~l~~li~~h~ 67 (342)
T COG5146 20 KVAIDIGGTLAKVVQSPSQS-----NRLTFKTEETKK---IDQVVEWLNNLIQQHE 67 (342)
T ss_pred EEEEecCceeeeeeeCcccc-----cceeeehHhhhh---HHHHHHHHHHHHHHHH
Confidence 48999999988886633211 122333333322 4677778777665543
No 125
>PTZ00378 hypothetical protein; Provisional
Probab=40.36 E-value=48 Score=29.46 Aligned_cols=61 Identities=21% Similarity=0.220 Sum_probs=44.2
Q ss_pred CCccc--cEEEEecCCceEEEEEEEe-cCceEEE----EEEEeecCCCccCCChhHHHHHHHHHHHHH
Q psy6344 59 GKEKG--KFLALDLGGTNFRVLIIYL-EENHFKM----ESKVYSIPQDIMTGSGTQLFDHIAECLADF 119 (142)
Q Consensus 59 G~E~G--~fLalDlGGTnlRv~~V~L-g~~~~~~----~~~~~~ip~~~~~~~~~~lFd~ia~~i~~f 119 (142)
|.+-| .+|+||+--+.|||.-+-. .++.++- ....|.+.+.-..-++++|.||..+.|.++
T Consensus 275 Gy~pG~dI~iglD~AASef~~~~~~~~~~~~y~~~k~~~e~~Y~l~~~~~~~t~~elieyy~~li~kY 342 (518)
T PTZ00378 275 QLTPGTDVCLGLRMAASTTRVPATAVADGGAWKEAKDDCEVLYSLFPGEPDVTGDQLSEYVREQLQAV 342 (518)
T ss_pred CCCCCCeEEEEEecccccccccccccccchhhccccCCCceeeeecCCCCCCCHHHHHHHHHHHHHHC
Confidence 55545 6899999999999998888 5555532 112577742223357899999999999886
No 126
>PRK04792 tolB translocation protein TolB; Provisional
Probab=39.71 E-value=91 Score=26.55 Aligned_cols=63 Identities=17% Similarity=0.157 Sum_probs=39.6
Q ss_pred ccCccCHHHHHHHHHHHHHHHHHhhccCCCCCcccceeccccccCCCCCccccEEEEecCCceEEE
Q psy6344 12 KDLVLSDEQLREVMSKLLLAINKGLDKNTNKEAVVKCFPTYVQDLPNGKEKGKFLALDLGGTNFRV 77 (142)
Q Consensus 12 ~~f~l~~~~L~~i~~~f~~em~~gL~~~~~~~s~~~Mlps~v~~~P~G~E~G~fLalDlGGTnlRv 77 (142)
+.+.++.+++..++.+|..++.+.|.+... ...-=-.||.....+...-+....|..|.|.|+
T Consensus 150 ~~~~~~~~~~r~~~h~~~d~i~~~ltG~~g---~f~~riayv~~~~~~~~~~~l~i~d~dG~~~~~ 212 (448)
T PRK04792 150 RVAVISAAQFRQYAHRISDIVYEKLTGERG---AFLTRIAYVVVNDKDKYPYQLMIADYDGYNEQM 212 (448)
T ss_pred eeEEeCHHHHHHHHHHHHHHHHHHhcCCCc---cccCEEEEEEeeCCCCCceEEEEEeCCCCCceE
Confidence 357789999999999999999999987542 111112244322222222344456777777764
No 127
>PRK13331 pantothenate kinase; Reviewed
Probab=38.14 E-value=41 Score=26.90 Aligned_cols=20 Identities=20% Similarity=0.306 Sum_probs=17.7
Q ss_pred cccEEEEecCCceEEEEEEE
Q psy6344 62 KGKFLALDLGGTNFRVLIIY 81 (142)
Q Consensus 62 ~G~fLalDlGGTnlRv~~V~ 81 (142)
+-+.||||+|=||..+++.+
T Consensus 6 ~~~~L~iDiGNT~~~~g~f~ 25 (251)
T PRK13331 6 SNEWLALMIGNSRLHWGYFS 25 (251)
T ss_pred CCcEEEEEeCCCcEEEEEEE
Confidence 34789999999999999987
No 128
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=37.94 E-value=1.5e+02 Score=23.94 Aligned_cols=20 Identities=30% Similarity=0.496 Sum_probs=17.8
Q ss_pred cEEEEecCCceEEEEEEEec
Q psy6344 64 KFLALDLGGTNFRVLIIYLE 83 (142)
Q Consensus 64 ~fLalDlGGTnlRv~~V~Lg 83 (142)
..+++|+||.++-++.|+.+
T Consensus 151 ~~lVvDiG~gttdvs~v~~~ 170 (333)
T TIGR00904 151 GSMVVDIGGGTTEVAVISLG 170 (333)
T ss_pred eEEEEEcCCCeEEEEEEEeC
Confidence 36999999999999999884
No 129
>PRK10854 exopolyphosphatase; Provisional
Probab=37.51 E-value=2.5e+02 Score=24.53 Aligned_cols=58 Identities=17% Similarity=0.387 Sum_probs=37.6
Q ss_pred cEEEEecCCceEEEEEEEecCceEEEE---EEEeecCCCcc-CCC-hhHHHHHHHHHHHHHhh
Q psy6344 64 KFLALDLGGTNFRVLIIYLEENHFKME---SKVYSIPQDIM-TGS-GTQLFDHIAECLADFMR 121 (142)
Q Consensus 64 ~fLalDlGGTnlRv~~V~Lg~~~~~~~---~~~~~ip~~~~-~~~-~~~lFd~ia~~i~~fl~ 121 (142)
.|=|||+|-.++|..+++..++.+++. ....++-+.+- ++. .++=.+-..+++..|..
T Consensus 12 ~~A~IDIGSNSirL~I~e~~~~~~~~i~~~k~~vrLg~g~~~~g~Ls~e~~~r~~~~L~~F~~ 74 (513)
T PRK10854 12 EFAAVDLGSNSFHMVIARVVDGAMQIIGRLKQRVHLADGLDSDNMLSEEAMERGLNCLSLFAE 74 (513)
T ss_pred EEEEEEeccchheEEEEEecCCcEEEeeeeeEEEECCCCcCCCCCcCHHHHHHHHHHHHHHHH
Confidence 577999999999999999933344432 22344544442 222 35677777777877754
No 130
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=36.90 E-value=1.2e+02 Score=24.47 Aligned_cols=19 Identities=32% Similarity=0.541 Sum_probs=17.3
Q ss_pred EEEEecCCceEEEEEEEec
Q psy6344 65 FLALDLGGTNFRVLIIYLE 83 (142)
Q Consensus 65 fLalDlGGTnlRv~~V~Lg 83 (142)
.+++|+||.+.-++.++.+
T Consensus 150 ~lvvDiGggttdvs~v~~~ 168 (334)
T PRK13927 150 SMVVDIGGGTTEVAVISLG 168 (334)
T ss_pred EEEEEeCCCeEEEEEEecC
Confidence 6999999999999999884
No 131
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=36.86 E-value=1.3e+02 Score=25.48 Aligned_cols=62 Identities=18% Similarity=0.378 Sum_probs=42.1
Q ss_pred cEEEEecCCceEEEEEEEecCceEEEEE-EEeecCCCccCCChhHHHHHHHHHHHHHhhhcCC
Q psy6344 64 KFLALDLGGTNFRVLIIYLEENHFKMES-KVYSIPQDIMTGSGTQLFDHIAECLADFMRDNDV 125 (142)
Q Consensus 64 ~fLalDlGGTnlRv~~V~Lg~~~~~~~~-~~~~ip~~~~~~~~~~lFd~ia~~i~~fl~~~~~ 125 (142)
.-+.||+|-+..+++-.+-.++.+++.. -.-.+|..++....--=.+-+|+.|++-+++.+.
T Consensus 11 ~~vGIdI~~~sVKvvqLs~~g~~~kLe~y~~~~lp~~iv~dg~ivd~~av~~~Lk~ala~~gi 73 (354)
T COG4972 11 AAVGIDIGSHSVKVVQLSRSGNRYKLEKYASEPLPENIVADGKIVDYDAVASALKRALAKLGI 73 (354)
T ss_pred ceeeEeeccceEEEEEEcccCCceeeeeeeecccCccccccCCcccHHHHHHHHHHHHHhcCc
Confidence 3578999999999877775334565543 3457888877544333356788888887777653
No 132
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=35.89 E-value=32 Score=30.66 Aligned_cols=16 Identities=38% Similarity=0.466 Sum_probs=14.6
Q ss_pred EEEecCCceEEEEEEE
Q psy6344 66 LALDLGGTNFRVLIIY 81 (142)
Q Consensus 66 LalDlGGTnlRv~~V~ 81 (142)
++||||.||-.|+.++
T Consensus 2 iGIDlGTtns~va~~~ 17 (599)
T TIGR01991 2 VGIDLGTTNSLVASVR 17 (599)
T ss_pred EEEEEccccEEEEEEE
Confidence 7899999999999876
No 133
>PLN02666 5-oxoprolinase
Probab=35.29 E-value=33 Score=33.70 Aligned_cols=17 Identities=29% Similarity=0.483 Sum_probs=15.8
Q ss_pred cEEEEecCCceEEEEEE
Q psy6344 64 KFLALDLGGTNFRVLII 80 (142)
Q Consensus 64 ~fLalDlGGTnlRv~~V 80 (142)
..+++|+|||+.-|++|
T Consensus 315 ~~I~~DmGGTTtDv~li 331 (1275)
T PLN02666 315 PVIGFDMGGTSTDVSRY 331 (1275)
T ss_pred CEEEEecCCceeeeEEE
Confidence 47999999999999998
No 134
>PF02268 TFIIA_gamma_N: Transcription initiation factor IIA, gamma subunit, helical domain; InterPro: IPR015872 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the alpha-helical domain found at the N-terminal of the gamma subunit of transcription factor TFIIA.; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_D 1RM1_B 1YTF_D 1NH2_D.
Probab=35.27 E-value=70 Score=19.23 Aligned_cols=36 Identities=14% Similarity=0.233 Sum_probs=29.2
Q ss_pred chHHHHHHhcccCccCHHHHHHHHHHHHHHHHHhhc
Q psy6344 2 SVRGKIREHCKDLVLSDEQLREVMSKLLLAINKGLD 37 (142)
Q Consensus 2 ~~~~~~~~~~~~f~l~~~~L~~i~~~f~~em~~gL~ 37 (142)
++...++++++.=.++++--..|-..|-.-|.+.|+
T Consensus 14 aL~dtLDeli~~~~I~p~La~kVL~~FDksi~~~L~ 49 (49)
T PF02268_consen 14 ALTDTLDELIQEGKITPQLAMKVLEQFDKSINEALS 49 (49)
T ss_dssp HHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 456778888888889999999999999988887763
No 135
>PLN03184 chloroplast Hsp70; Provisional
Probab=35.05 E-value=45 Score=30.28 Aligned_cols=18 Identities=39% Similarity=0.495 Sum_probs=16.1
Q ss_pred cEEEEecCCceEEEEEEE
Q psy6344 64 KFLALDLGGTNFRVLIIY 81 (142)
Q Consensus 64 ~fLalDlGGTnlRv~~V~ 81 (142)
..++||||.||-.|+.++
T Consensus 40 ~viGIDlGTt~s~va~~~ 57 (673)
T PLN03184 40 KVVGIDLGTTNSAVAAME 57 (673)
T ss_pred CEEEEEeCcCcEEEEEEE
Confidence 479999999999999875
No 136
>PF06992 Phage_lambda_P: Replication protein P; InterPro: IPR009731 This family consists of several Bacteriophage lambda replication protein P like proteins. The bacteriophage lambda P protein promoters replication of the phage chromosome by recruiting a key component of the cellular replication machinery to the viral origin. Specifically, P protein delivers one or more molecules of Escherichia coli DnaB helicase to a nucleoprotein structure formed by the lambda O initiator at the lambda replication origin [].; GO: 0006270 DNA-dependent DNA replication initiation
Probab=34.71 E-value=52 Score=26.20 Aligned_cols=56 Identities=27% Similarity=0.367 Sum_probs=40.6
Q ss_pred HHHhcccCccCHHHHHHHHHHHHHHHHHhhccCCCCCcccceeccccccCCCCCccc
Q psy6344 7 IREHCKDLVLSDEQLREVMSKLLLAINKGLDKNTNKEAVVKCFPTYVQDLPNGKEKG 63 (142)
Q Consensus 7 ~~~~~~~f~l~~~~L~~i~~~f~~em~~gL~~~~~~~s~~~Mlps~v~~~P~G~E~G 63 (142)
+..-.....+++++|..-+...+..|.+.+.+-..-....+.||+-. +.|+..|.|
T Consensus 160 Ly~~~r~~~lt~~eLrk~a~~~L~~makRi~sGE~IPePv~qLp~~~-~~P~s~e~~ 215 (233)
T PF06992_consen 160 LYRRMRQRQLTDEELRKRAKKELKAMAKRIASGEPIPEPVKQLPKLH-SIPVSREKA 215 (233)
T ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHHHHHHCCCcCCcHHHHhhhhc-CCCCCHHHH
Confidence 33445667799999999999999999999975322223466777655 478888876
No 137
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=34.50 E-value=32 Score=28.09 Aligned_cols=15 Identities=33% Similarity=0.514 Sum_probs=12.8
Q ss_pred cEEEEecCCceEEEE
Q psy6344 64 KFLALDLGGTNFRVL 78 (142)
Q Consensus 64 ~fLalDlGGTnlRv~ 78 (142)
+-++||||.||.||.
T Consensus 5 ~~~giDlGt~~~~i~ 19 (335)
T PRK13929 5 TEIGIDLGTANILVY 19 (335)
T ss_pred CeEEEEcccccEEEE
Confidence 359999999999974
No 138
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=34.25 E-value=33 Score=27.81 Aligned_cols=14 Identities=36% Similarity=0.638 Sum_probs=13.0
Q ss_pred EEEecCCceEEEEE
Q psy6344 66 LALDLGGTNFRVLI 79 (142)
Q Consensus 66 LalDlGGTnlRv~~ 79 (142)
++||||-||-|++.
T Consensus 5 ~giDlGt~~s~i~~ 18 (333)
T TIGR00904 5 IGIDLGTANTLVYV 18 (333)
T ss_pred eEEecCcceEEEEE
Confidence 89999999999876
No 139
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=33.89 E-value=40 Score=27.97 Aligned_cols=16 Identities=38% Similarity=0.688 Sum_probs=12.6
Q ss_pred cEEEEecCCceEEEEE
Q psy6344 64 KFLALDLGGTNFRVLI 79 (142)
Q Consensus 64 ~fLalDlGGTnlRv~~ 79 (142)
+.++||||-+|.||+.
T Consensus 2 ~~igIDLGT~~t~i~~ 17 (326)
T PF06723_consen 2 KDIGIDLGTSNTRIYV 17 (326)
T ss_dssp SEEEEEE-SSEEEEEE
T ss_pred CceEEecCcccEEEEE
Confidence 4689999999999953
No 140
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=33.84 E-value=1.5e+02 Score=23.95 Aligned_cols=18 Identities=11% Similarity=0.370 Sum_probs=16.7
Q ss_pred EEEEecCCceEEEEEEEe
Q psy6344 65 FLALDLGGTNFRVLIIYL 82 (142)
Q Consensus 65 fLalDlGGTnlRv~~V~L 82 (142)
|+.||+|-|+-++++++-
T Consensus 3 ~~GIDiGStttK~Vlid~ 20 (262)
T TIGR02261 3 TAGIDIGTGAIKTVLFEV 20 (262)
T ss_pred EEEEEcCcccEEEEEEec
Confidence 689999999999999986
No 141
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=33.69 E-value=52 Score=27.68 Aligned_cols=53 Identities=21% Similarity=0.300 Sum_probs=32.1
Q ss_pred CCCCccccEEEEecCCceEEEEEEEecCceEEEEEEEeecCCCccCCChhHHHHHHHHHH
Q psy6344 57 PNGKEKGKFLALDLGGTNFRVLIIYLEENHFKMESKVYSIPQDIMTGSGTQLFDHIAECL 116 (142)
Q Consensus 57 P~G~E~G~fLalDlGGTnlRv~~V~Lg~~~~~~~~~~~~ip~~~~~~~~~~lFd~ia~~i 116 (142)
|-...+|. .++|+||=+-=|+.+.|++- +.++..++-.+.+ .+++..||-+..
T Consensus 148 pi~ep~G~-mvvDIGgGTTevaVISlggi---v~~~Sirv~GD~~---De~Ii~yvr~~~ 200 (342)
T COG1077 148 PIMEPTGS-MVVDIGGGTTEVAVISLGGI---VSSSSVRVGGDKM---DEAIIVYVRKKY 200 (342)
T ss_pred cccCCCCC-EEEEeCCCceeEEEEEecCE---EEEeeEEEecchh---hHHHHHHHHHHh
Confidence 33444554 78999977777999999552 3455566554433 244555554443
No 142
>KOG0100|consensus
Probab=33.59 E-value=87 Score=27.57 Aligned_cols=28 Identities=29% Similarity=0.641 Sum_probs=23.8
Q ss_pred cEEEEecCCceEEEEEEEecCceEEEEE
Q psy6344 64 KFLALDLGGTNFRVLIIYLEENHFKMES 91 (142)
Q Consensus 64 ~fLalDlGGTnlRv~~V~Lg~~~~~~~~ 91 (142)
..|+.||||-+|-|.+..+.++.|++..
T Consensus 226 nilVfDLGGGTFDVSlLtIdnGVFeVla 253 (663)
T KOG0100|consen 226 NILVFDLGGGTFDVSLLTIDNGVFEVLA 253 (663)
T ss_pred eEEEEEcCCceEEEEEEEEcCceEEEEe
Confidence 4799999999999999999777776654
No 143
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=33.37 E-value=2.4e+02 Score=24.61 Aligned_cols=57 Identities=16% Similarity=0.351 Sum_probs=37.0
Q ss_pred cEEEEecCCceEEEEEEEe-cCceEEEE---EEEeecCCCcc-CCC-hhHHHHHHHHHHHHHhh
Q psy6344 64 KFLALDLGGTNFRVLIIYL-EENHFKME---SKVYSIPQDIM-TGS-GTQLFDHIAECLADFMR 121 (142)
Q Consensus 64 ~fLalDlGGTnlRv~~V~L-g~~~~~~~---~~~~~ip~~~~-~~~-~~~lFd~ia~~i~~fl~ 121 (142)
.|=|||+|-.++|..+++. + +.++.. ....++.+.+. +|. ..+=.+-..+++..|..
T Consensus 7 ~~A~IDIGSNSirL~I~~~~~-~~~~~l~~~k~~vrLg~g~~~~g~Ls~e~i~r~~~~L~~F~~ 69 (496)
T PRK11031 7 LYAAIDLGSNSFHMLVVREVA-GSIQTLARIKRKVRLAAGLDSDNALSNEAMERGWQCLRLFAE 69 (496)
T ss_pred EEEEEEccccceeEEEEEecC-CceEEeecceeEEEccCCcCcCCCcCHHHHHHHHHHHHHHHH
Confidence 4568999999999999999 5 454432 22345544332 232 35667777777877754
No 144
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=32.60 E-value=98 Score=22.23 Aligned_cols=20 Identities=30% Similarity=0.534 Sum_probs=15.1
Q ss_pred cccEEEEecCCceEEEEEEE
Q psy6344 62 KGKFLALDLGGTNFRVLIIY 81 (142)
Q Consensus 62 ~G~fLalDlGGTnlRv~~V~ 81 (142)
.+++||||+|-...=+|+.+
T Consensus 3 ~~~iLalD~G~kriGvAv~d 22 (138)
T PRK00109 3 SGRILGLDVGTKRIGVAVSD 22 (138)
T ss_pred CCcEEEEEeCCCEEEEEEec
Confidence 35699999998766666654
No 145
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=32.59 E-value=35 Score=27.71 Aligned_cols=15 Identities=33% Similarity=0.600 Sum_probs=13.4
Q ss_pred EEEecCCceEEEEEE
Q psy6344 66 LALDLGGTNFRVLII 80 (142)
Q Consensus 66 LalDlGGTnlRv~~V 80 (142)
++||||-||.||+..
T Consensus 6 ~gIDlGt~~~~i~~~ 20 (336)
T PRK13928 6 IGIDLGTANVLVYVK 20 (336)
T ss_pred eEEEcccccEEEEEC
Confidence 899999999999773
No 146
>COG0799 Uncharacterized homolog of plant Iojap protein [Function unknown]
Probab=32.34 E-value=1.2e+02 Score=21.42 Aligned_cols=42 Identities=17% Similarity=0.396 Sum_probs=29.8
Q ss_pred cCHHHHHHHHHHHHHHHHHhhccCCCCCcccceeccccccCCCCCccccEEEEecCC
Q psy6344 16 LSDEQLREVMSKLLLAINKGLDKNTNKEAVVKCFPTYVQDLPNGKEKGKFLALDLGG 72 (142)
Q Consensus 16 l~~~~L~~i~~~f~~em~~gL~~~~~~~s~~~Mlps~v~~~P~G~E~G~fLalDlGG 72 (142)
.|.-++..|++...++++ ... ..|..+ .|.+.|+...||+|-
T Consensus 43 ~s~rhv~Aiad~i~~~~k-~~g----------~~~~~~----EG~~~~~WvliD~Gd 84 (115)
T COG0799 43 NSSRHVKAIADNVKEELK-EAG----------EVPLRI----EGLSEGEWVLIDLGD 84 (115)
T ss_pred CchHHHHHHHHHHHHHHH-HcC----------CCcccc----cCCCcCCEEEEecCc
Confidence 466788889998888873 222 133343 577888999999993
No 147
>PF04848 Pox_A22: Poxvirus A22 protein; InterPro: IPR006932 This family, representing the Poxvirus A22 protein, is a Holliday junction resolvase, it specifically cleaves and resolves four-way DNA Holliday junctions into linear duplex products. ; GO: 0000287 magnesium ion binding, 0000400 four-way junction DNA binding, 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination
Probab=31.76 E-value=1e+02 Score=22.68 Aligned_cols=20 Identities=30% Similarity=0.477 Sum_probs=17.9
Q ss_pred EEEEecCCceEEEEEEEe-cC
Q psy6344 65 FLALDLGGTNFRVLIIYL-EE 84 (142)
Q Consensus 65 fLalDlGGTnlRv~~V~L-g~ 84 (142)
.+|||+|--|+=.|+++. ++
T Consensus 3 i~sIDiGikNlA~~iie~~~~ 23 (143)
T PF04848_consen 3 ILSIDIGIKNLAYCIIEFEGN 23 (143)
T ss_pred EEEEecCCCceeEEEEEcCCC
Confidence 689999999999999999 44
No 148
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=31.13 E-value=45 Score=26.93 Aligned_cols=15 Identities=40% Similarity=0.523 Sum_probs=12.9
Q ss_pred EEEEecCCceEEEEE
Q psy6344 65 FLALDLGGTNFRVLI 79 (142)
Q Consensus 65 fLalDlGGTnlRv~~ 79 (142)
.++||+|-+|.|+..
T Consensus 7 ~igIDlGt~~~~i~~ 21 (334)
T PRK13927 7 DLGIDLGTANTLVYV 21 (334)
T ss_pred eeEEEcCcceEEEEE
Confidence 589999999999744
No 149
>PF05372 Delta_lysin: Delta lysin family; InterPro: IPR008034 Delta-lysin is a 26 amino acid, hemolytic peptide toxin secreted by Staphylococcus aureus. It is thought that delta-toxin forms an amphipathic helix upon binding to lipid bilayers []. The precise mode of action of delta-lysis is unclear.; GO: 0019836 hemolysis by symbiont of host erythrocytes, 0005576 extracellular region; PDB: 2KAM_A 2DTB_A 1DTC_A.
Probab=30.97 E-value=57 Score=16.72 Aligned_cols=15 Identities=20% Similarity=0.337 Sum_probs=12.0
Q ss_pred hHHHHHHHHHHHHHh
Q psy6344 106 TQLFDHIAECLADFM 120 (142)
Q Consensus 106 ~~lFd~ia~~i~~fl 120 (142)
-+|..||++.++.|.
T Consensus 10 gdfvKlI~~TV~KF~ 24 (25)
T PF05372_consen 10 GDFVKLIIETVKKFT 24 (25)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhc
Confidence 578888888888874
No 150
>PF12078 DUF3557: Domain of unknown function (DUF3557); InterPro: IPR021942 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 150 amino acids in length.
Probab=30.44 E-value=50 Score=23.39 Aligned_cols=13 Identities=46% Similarity=0.828 Sum_probs=11.3
Q ss_pred cceEEEEecccCC
Q psy6344 130 LPLGFTFSFPLTQ 142 (142)
Q Consensus 130 l~lGfTFSFP~~Q 142 (142)
-++|-+|||-++|
T Consensus 142 r~IGt~~sf~~~~ 154 (154)
T PF12078_consen 142 RPIGTCFSFGIKQ 154 (154)
T ss_pred CCCcEEEEEEEEC
Confidence 5699999998876
No 151
>TIGR01201 HU_rel DNA-binding protein, histone-like, putative. This model describes a set of proteins related to but longer than DNA-binding protein HU. Its distinctive domain architecture compared to HU and related histone-like DNA-binding proteins justifies the designation as superfamily. Members include, so far, one from Bacteroides fragilis, a gut bacterium, and ten from Porphyromonas gingivalis, an oral anaerobe.
Probab=30.35 E-value=1e+02 Score=22.37 Aligned_cols=39 Identities=10% Similarity=0.236 Sum_probs=33.2
Q ss_pred CchHHHHHHhcccCccCHHHHHHHHHHHHHHHHHhhccC
Q psy6344 1 MSVRGKIREHCKDLVLSDEQLREVMSKLLLAINKGLDKN 39 (142)
Q Consensus 1 ~~~~~~~~~~~~~f~l~~~~L~~i~~~f~~em~~gL~~~ 39 (142)
|+...-++++.+...++..+...+.+.+.+.|...|...
T Consensus 31 mt~~el~~~Ia~~s~~s~~dv~~vl~~l~~~i~~~L~~G 69 (145)
T TIGR01201 31 IDFEEIAELIAEESSLSPGDVKGIIDRLAYVLRRELANG 69 (145)
T ss_pred cCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence 556666777878888999999999999999999999753
No 152
>PRK03629 tolB translocation protein TolB; Provisional
Probab=30.01 E-value=1.6e+02 Score=24.82 Aligned_cols=63 Identities=16% Similarity=0.092 Sum_probs=39.7
Q ss_pred ccCccCHHHHHHHHHHHHHHHHHhhccCCCCCcccceeccccccCCCCCccccEEEEecCCceEEE
Q psy6344 12 KDLVLSDEQLREVMSKLLLAINKGLDKNTNKEAVVKCFPTYVQDLPNGKEKGKFLALDLGGTNFRV 77 (142)
Q Consensus 12 ~~f~l~~~~L~~i~~~f~~em~~gL~~~~~~~s~~~Mlps~v~~~P~G~E~G~fLalDlGGTnlRv 77 (142)
+.+..+.+++..++.+|..++.+.|.+... ...---.||....++...-+....|..|.|.|.
T Consensus 131 ~~~~~~~~~~r~~ah~~~d~i~~~ltg~~g---~f~~riayv~~~~~~~~~~~l~~~d~dg~~~~~ 193 (429)
T PRK03629 131 NQYKVTKQWLRYAAHTASDEVFEKLTGIKG---AFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFV 193 (429)
T ss_pred cEEEcCHHHHHHHHHHHHHHHHHHhcCCCC---ccCCeEEEEEeeCCCCcceeEEEEcCCCCCCEE
Confidence 467789999999999999999999987542 111112344332333222344566777776655
No 153
>PF11405 Inhibitor_I67: Bromelain inhibitor VI; InterPro: IPR022713 Bromelain inhibitor VI is a double-chain inhibitor consisting of an 11-residue and a 41-residue chain. This protein is the 41-residue heavy chain which is joined to the 11-residue chain by disulphide bonds. The inhibitor acts to inhibit the cysteine proteinase bromelain. ; PDB: 2BI6_H 1BI6_H.
Probab=29.95 E-value=30 Score=19.45 Aligned_cols=13 Identities=46% Similarity=0.685 Sum_probs=8.7
Q ss_pred CccccEEEEecCC
Q psy6344 60 KEKGKFLALDLGG 72 (142)
Q Consensus 60 ~E~G~fLalDlGG 72 (142)
.|.|+|+.+|+=.
T Consensus 23 aefgkyicldlis 35 (41)
T PF11405_consen 23 AEFGKYICLDLIS 35 (41)
T ss_dssp EETTEEEE-EE--
T ss_pred HHhcceEEEEecC
Confidence 5789999999743
No 154
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=29.27 E-value=2.1e+02 Score=22.93 Aligned_cols=17 Identities=24% Similarity=0.436 Sum_probs=15.9
Q ss_pred EEEEecCCceEEEEEEE
Q psy6344 65 FLALDLGGTNFRVLIIY 81 (142)
Q Consensus 65 fLalDlGGTnlRv~~V~ 81 (142)
+|+||+|=||+..++.+
T Consensus 2 ~L~iDiGNT~~~~a~~~ 18 (251)
T COG1521 2 LLLIDIGNTRIVFALYE 18 (251)
T ss_pred eEEEEeCCCeEEEEEec
Confidence 69999999999999987
No 155
>PF03630 Fumble: Fumble ; InterPro: IPR004567 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This family describes the type II (primarily eukaryotic) form of pantothenate kinase PanK, characterised from the fungus Emericella nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from type I PanK enzymes and shows little sequence similarity [, ].; GO: 0004594 pantothenate kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 3SMP_B 2I7N_B 2EWS_B 2I7P_C 3SMS_A 3MK6_D.
Probab=29.10 E-value=58 Score=27.22 Aligned_cols=18 Identities=28% Similarity=0.552 Sum_probs=15.2
Q ss_pred EEEEecCCceEEEEEEEe
Q psy6344 65 FLALDLGGTNFRVLIIYL 82 (142)
Q Consensus 65 fLalDlGGTnlRv~~V~L 82 (142)
.+|+|+|||=.+++...-
T Consensus 2 ~faiDIGGTL~KlVYfs~ 19 (341)
T PF03630_consen 2 HFAIDIGGTLVKLVYFSP 19 (341)
T ss_dssp EEEEEE-SSEEEEEEEEE
T ss_pred eEEEEcCCceEEEEEEee
Confidence 479999999999998877
No 156
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=29.09 E-value=46 Score=28.85 Aligned_cols=19 Identities=26% Similarity=0.508 Sum_probs=17.0
Q ss_pred cEEEEecCCceEEEEEEEe
Q psy6344 64 KFLALDLGGTNFRVLIIYL 82 (142)
Q Consensus 64 ~fLalDlGGTnlRv~~V~L 82 (142)
-|+.||+|+|+-++++++-
T Consensus 3 y~lGIDIGSTsTKaVVmd~ 21 (432)
T TIGR02259 3 CFVGIDLGSTTTKAVLMDD 21 (432)
T ss_pred eEEEEEcCchhEEEEEEcC
Confidence 3789999999999999886
No 157
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=29.04 E-value=2.2e+02 Score=23.15 Aligned_cols=21 Identities=29% Similarity=0.433 Sum_probs=18.1
Q ss_pred cEEEEecCCceEEEEEEEecC
Q psy6344 64 KFLALDLGGTNFRVLIIYLEE 84 (142)
Q Consensus 64 ~fLalDlGGTnlRv~~V~Lg~ 84 (142)
..+.+|+||.+.-++.+..++
T Consensus 151 ~~lvvDiG~gtt~v~vi~~~~ 171 (335)
T PRK13929 151 ANVVVDIGGGTTEVAIISFGG 171 (335)
T ss_pred eEEEEEeCCCeEEEEEEEeCC
Confidence 378999999999999998743
No 158
>PF11687 DUF3284: Domain of unknown function (DUF3284); InterPro: IPR021701 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=28.91 E-value=79 Score=22.07 Aligned_cols=35 Identities=20% Similarity=0.383 Sum_probs=22.0
Q ss_pred CCChhHHHHHHHHHHHHHhhhcCC---CCCccceEEEEe
Q psy6344 102 TGSGTQLFDHIAECLADFMRDNDV---ASERLPLGFTFS 137 (142)
Q Consensus 102 ~~~~~~lFd~ia~~i~~fl~~~~~---~~~~l~lGfTFS 137 (142)
..++++|||+|.+.+..=+..... ..+.| -||++.
T Consensus 8 ~v~a~~ff~~l~~s~~~DI~~~tgk~~~~~~L-~G~~Y~ 45 (120)
T PF11687_consen 8 NVSAEEFFDYLIDSLLYDIKQATGKKLPVKQL-KGFSYQ 45 (120)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHcCCCCChhhc-CCcEEE
Confidence 356799999999988544544221 22345 777764
No 159
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=28.88 E-value=57 Score=29.13 Aligned_cols=21 Identities=33% Similarity=0.357 Sum_probs=18.5
Q ss_pred ccEEEEecCCceEEEEEEEec
Q psy6344 63 GKFLALDLGGTNFRVLIIYLE 83 (142)
Q Consensus 63 G~fLalDlGGTnlRv~~V~Lg 83 (142)
..+++||||-||-=|+.++-+
T Consensus 5 ~~~iGIDlGTTNS~vA~~~~~ 25 (579)
T COG0443 5 KKAIGIDLGTTNSVVAVMRGG 25 (579)
T ss_pred ceEEEEEcCCCcEEEEEEeCC
Confidence 468999999999999999863
No 160
>PRK13322 pantothenate kinase; Reviewed
Probab=28.31 E-value=59 Score=25.66 Aligned_cols=17 Identities=29% Similarity=0.495 Sum_probs=15.8
Q ss_pred EEEEecCCceEEEEEEE
Q psy6344 65 FLALDLGGTNFRVLIIY 81 (142)
Q Consensus 65 fLalDlGGTnlRv~~V~ 81 (142)
+|+||.|=||.+.++.+
T Consensus 2 ~L~IDiGNT~iK~~l~~ 18 (246)
T PRK13322 2 ILELDCGNSRLKWRVID 18 (246)
T ss_pred EEEEEeCCCcEEEEEEc
Confidence 69999999999999887
No 161
>PF08338 DUF1731: Domain of unknown function (DUF1731); InterPro: IPR013549 This domain of unknown function appears towards the C terminus of proteins of the NAD dependent epimerase/dehydratase family (IPR001509 from INTERPRO) in bacteria, eukaryotes and archaea. Many of the proteins in which it is found are involved in cell-division inhibition. ; PDB: 3OH8_A.
Probab=28.16 E-value=15 Score=21.74 Aligned_cols=11 Identities=45% Similarity=1.005 Sum_probs=5.2
Q ss_pred ccceEEEEecc
Q psy6344 129 RLPLGFTFSFP 139 (142)
Q Consensus 129 ~l~lGfTFSFP 139 (142)
-...||+|.||
T Consensus 28 L~~~GF~F~~p 38 (48)
T PF08338_consen 28 LLEAGFQFRYP 38 (48)
T ss_dssp HHHTT---S-S
T ss_pred HHHCCCcccCC
Confidence 35689999998
No 162
>PF01548 DEDD_Tnp_IS110: Transposase; InterPro: IPR002525 Transposase proteins are necessary for efficient DNA transposition. This entry represents the N-terminal region of the pilin gene inverting protein (PIVML) and members of the IS111A/IS1328/IS1533 family of transposases [, ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=26.77 E-value=1.5e+02 Score=20.58 Aligned_cols=45 Identities=18% Similarity=0.310 Sum_probs=26.5
Q ss_pred EEEEecCCceEEEEEEEecCceEEEEEEEeecCCCccCCChhHHHHHHHHH
Q psy6344 65 FLALDLGGTNFRVLIIYLEENHFKMESKVYSIPQDIMTGSGTQLFDHIAEC 115 (142)
Q Consensus 65 fLalDlGGTnlRv~~V~Lg~~~~~~~~~~~~ip~~~~~~~~~~lFd~ia~~ 115 (142)
|++||+|-..+-||++.-.+. ......++.+-. .-.+|++|+++.
T Consensus 1 ~vGiDv~k~~~~v~v~~~~~~----~~~~~~~~~~~~--~~~~l~~~l~~~ 45 (144)
T PF01548_consen 1 FVGIDVSKDTHDVCVIDPNGE----KLRRFKFENDPA--GLEKLLDWLASL 45 (144)
T ss_pred eEEEEcccCeEEEEEEcCCCc----EEEEEEEecccc--chhHHhhhhccc
Confidence 789999999999988776221 122233333211 125677776664
No 163
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=26.73 E-value=1.2e+02 Score=24.80 Aligned_cols=37 Identities=22% Similarity=0.213 Sum_probs=23.7
Q ss_pred cccceeccccccC-CCCCccccEEEEecCCceEEEEEEEe
Q psy6344 44 AVVKCFPTYVQDL-PNGKEKGKFLALDLGGTNFRVLIIYL 82 (142)
Q Consensus 44 s~~~Mlps~v~~~-P~G~E~G~fLalDlGGTnlRv~~V~L 82 (142)
..+.+.|..+..+ -.|. -.-|+||+|+.+.+|+-|.-
T Consensus 125 ~~v~~~~~~~~a~~~~g~--~~~lVVDiG~~~t~i~pv~~ 162 (371)
T cd00012 125 PALYVAIQAVLSLYASGR--TTGLVVDSGDGVTHVVPVYD 162 (371)
T ss_pred CEEEEechHHHHHHhcCC--CeEEEEECCCCeeEEEEEEC
Confidence 3455555544321 2233 24599999999999988875
No 164
>PRK11678 putative chaperone; Provisional
Probab=26.46 E-value=56 Score=28.21 Aligned_cols=17 Identities=29% Similarity=0.626 Sum_probs=15.0
Q ss_pred EEEEecCCceEEEEEEE
Q psy6344 65 FLALDLGGTNFRVLIIY 81 (142)
Q Consensus 65 fLalDlGGTnlRv~~V~ 81 (142)
++.||||.||-=|++.+
T Consensus 2 ~iGID~GTtNs~va~~~ 18 (450)
T PRK11678 2 FIGFDYGTANCSVAVMR 18 (450)
T ss_pred eEEEecCccceeeEEee
Confidence 68999999999888875
No 165
>KOG0102|consensus
Probab=26.29 E-value=1.1e+02 Score=27.79 Aligned_cols=32 Identities=34% Similarity=0.673 Sum_probs=26.5
Q ss_pred CCccccEEEEecCCceEEEEEEEecCceEEEE
Q psy6344 59 GKEKGKFLALDLGGTNFRVLIIYLEENHFKME 90 (142)
Q Consensus 59 G~E~G~fLalDlGGTnlRv~~V~Lg~~~~~~~ 90 (142)
+++.|...+-|+||.+|=+.+.++.++.+.+.
T Consensus 208 ~k~~g~iaV~dLgggtfdisilei~~gvfevk 239 (640)
T KOG0102|consen 208 KKEDGVIAVFDLGGGTFDISILEIEDGVFEVK 239 (640)
T ss_pred ccCCCceEEEEcCCceeeeeeehhccceeEEE
Confidence 56789999999999999999999966665544
No 166
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=25.93 E-value=56 Score=26.28 Aligned_cols=14 Identities=36% Similarity=0.638 Sum_probs=12.8
Q ss_pred EEEecCCceEEEEE
Q psy6344 66 LALDLGGTNFRVLI 79 (142)
Q Consensus 66 LalDlGGTnlRv~~ 79 (142)
++||+|-||.|++.
T Consensus 11 vgiDlGt~~t~i~~ 24 (335)
T PRK13930 11 IGIDLGTANTLVYV 24 (335)
T ss_pred eEEEcCCCcEEEEE
Confidence 99999999999875
No 167
>PF02933 CDC48_2: Cell division protein 48 (CDC48), domain 2; InterPro: IPR004201 This domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at the C terminus. The VAT-N domain found in AAA ATPases (IPR003959 from INTERPRO) is a substrate 185-residue recognition domain [].; GO: 0005524 ATP binding; PDB: 1QDN_B 1QCS_A 1CR5_C 3QQ8_A 3HU2_A 3HU1_E 3HU3_A 3QWZ_A 3TIW_B 3QQ7_A ....
Probab=25.93 E-value=1.6e+02 Score=17.86 Aligned_cols=26 Identities=12% Similarity=0.215 Sum_probs=20.7
Q ss_pred cccEEEEecCCceEEEEEEEe-cCceE
Q psy6344 62 KGKFLALDLGGTNFRVLIIYL-EENHF 87 (142)
Q Consensus 62 ~G~fLalDlGGTnlRv~~V~L-g~~~~ 87 (142)
.|..+.+++.|..+++..++. ..+..
T Consensus 21 ~Gd~i~~~~~~~~~~~~V~~~~P~~~v 47 (64)
T PF02933_consen 21 KGDTIVFPFFGQALPFKVVSTEPSGPV 47 (64)
T ss_dssp TT-EEEEEETTEEEEEEEEEECSSSEE
T ss_pred CCCEEEEEeCCcEEEEEEEEEEcCCCE
Confidence 367899999999999999999 55433
No 168
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=24.30 E-value=2.2e+02 Score=22.78 Aligned_cols=25 Identities=16% Similarity=0.355 Sum_probs=19.4
Q ss_pred CCCccccEEEEecCCceEEEEEEEe
Q psy6344 58 NGKEKGKFLALDLGGTNFRVLIIYL 82 (142)
Q Consensus 58 ~G~E~G~fLalDlGGTnlRv~~V~L 82 (142)
...++.-++.+|+|..+.=...+.-
T Consensus 24 ~ad~sk~~vGVDLGT~~iV~~vlD~ 48 (277)
T COG4820 24 AADESKLWVGVDLGTCDIVSMVLDR 48 (277)
T ss_pred ccccCceEEEeecccceEEEEEEcC
Confidence 4566778999999998877666654
No 169
>PF04534 Herpes_UL56: Herpesvirus UL56 protein; InterPro: IPR007620 In herpes simplex virus type 2, UL56 is thought to be a tail-anchored type II membrane protein involved in vesicular trafficking. The C-terminal hydrophobic region is required for association with the cytoplasmic membrane, and the N-terminal proline-rich region is important for the translocation of UL56 to the Golgi apparatus and cytoplasmic vesicles [].
Probab=23.86 E-value=56 Score=24.97 Aligned_cols=27 Identities=33% Similarity=0.722 Sum_probs=19.1
Q ss_pred cccceeccccccCCCCCccccEEEEecCC
Q psy6344 44 AVVKCFPTYVQDLPNGKEKGKFLALDLGG 72 (142)
Q Consensus 44 s~~~Mlps~v~~~P~G~E~G~fLalDlGG 72 (142)
+..--=|-|- -|.|...|.|.+||+|-
T Consensus 18 a~~d~PPPY~--s~sg~~eg~fv~IDi~~ 44 (198)
T PF04534_consen 18 AFADPPPPYD--SPSGANEGRFVSIDIGT 44 (198)
T ss_pred cccCCCCCCC--CCCCccccceEEEecCC
Confidence 3333345553 47899999999999993
No 170
>PF09159 Ydc2-catalyt: Mitochondrial resolvase Ydc2 / RNA splicing MRS1; InterPro: IPR015242 This domain forms a ribonuclease H fold consisting of two beta sheets and one alpha helix, arranged as a beta-alpha-beta motif. Each beta sheet has five strands, arranged in a 32145 order, with the second strand being antiparallel to the rest. They are capable of resolving Holliday junctions and cleave DNA after 5'-CT-3, and 5'-TT-3, sequences []. This entry also includes a domain found in the mitochondrial RNA-splicing protein MRS1 which is involved in the excision of group I introns [, ].; PDB: 1KCF_A.
Probab=23.85 E-value=84 Score=25.26 Aligned_cols=18 Identities=28% Similarity=0.493 Sum_probs=15.8
Q ss_pred EEEEecCCceEEEEEEEe
Q psy6344 65 FLALDLGGTNFRVLIIYL 82 (142)
Q Consensus 65 fLalDlGGTnlRv~~V~L 82 (142)
.||||+|=.||=.|.++.
T Consensus 1 ILSIDmGIkNfAy~~l~~ 18 (274)
T PF09159_consen 1 ILSIDMGIKNFAYCKLKV 18 (274)
T ss_dssp EEEEEE-STTEEEEEEEE
T ss_pred Cceeecchhhhhhhhhhh
Confidence 489999999999999998
No 171
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=23.74 E-value=1.3e+02 Score=16.09 Aligned_cols=19 Identities=16% Similarity=0.191 Sum_probs=14.4
Q ss_pred ccCHHHHHHHHHHHHHHHH
Q psy6344 15 VLSDEQLREVMSKLLLAIN 33 (142)
Q Consensus 15 ~l~~~~L~~i~~~f~~em~ 33 (142)
.|+.+++.+++.+...=++
T Consensus 4 ~i~~~~~~d~a~rv~~f~~ 22 (33)
T PF09373_consen 4 TISKEEYLDMASRVNNFYE 22 (33)
T ss_pred eecHHHHHHHHHHHHHHHH
Confidence 3678888888888777655
No 172
>KOG0103|consensus
Probab=23.66 E-value=1.9e+02 Score=26.78 Aligned_cols=62 Identities=23% Similarity=0.393 Sum_probs=40.3
Q ss_pred ccCCCCCcccc-EEEEecCCceEEEEEEEecCceEEEEEEEeecCCCccCCChhHHHHHHHHHH
Q psy6344 54 QDLPNGKEKGK-FLALDLGGTNFRVLIIYLEENHFKMESKVYSIPQDIMTGSGTQLFDHIAECL 116 (142)
Q Consensus 54 ~~~P~G~E~G~-fLalDlGGTnlRv~~V~Lg~~~~~~~~~~~~ip~~~~~~~~~~lFd~ia~~i 116 (142)
+++|...|..+ +.=+|+|-++.-++++.+..++..+....|.---.-+ .-.+.|+||+|+..
T Consensus 186 tDLP~~~ekpr~v~fvD~GHS~~q~si~aF~kG~lkvl~ta~D~~lGgr-~fDe~L~~hfa~ef 248 (727)
T KOG0103|consen 186 TDLPENEEKPRNVVFVDIGHSSYQVSIAAFTKGKLKVLATAFDRKLGGR-DFDEALIDHFAKEF 248 (727)
T ss_pred ccCCCcccCcceEEEEecccccceeeeeeeccCcceeeeeecccccccc-hHHHHHHHHHHHHh
Confidence 44677777654 5678999999999999995555556655554221111 12467788877654
No 173
>PF02816 Alpha_kinase: Alpha-kinase family; InterPro: IPR004166 Proteins containing this domain consist of a novel group of eukaryotic protein kinase catalytic domains, which have no detectable similarity to conventional kinases. Proteins include myosin heavy chain kinases [, ] and Elongation Factor-2 kinase and a bifunctional ion channel [].; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3LLA_A 3LMI_D 3PDT_A 3LMH_A 3LKM_A 1IAH_B 1IAJ_B 1IA9_B.
Probab=23.43 E-value=1.9e+02 Score=21.05 Aligned_cols=44 Identities=27% Similarity=0.411 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCcccceeccc-cccCCCCCc
Q psy6344 18 DEQLREVMSKLLLAINKGLDKNTNKEAVVKCFPTY-VQDLPNGKE 61 (142)
Q Consensus 18 ~~~L~~i~~~f~~em~~gL~~~~~~~s~~~Mlps~-v~~~P~G~E 61 (142)
.-+.+.++..+.++..+.+.........+..+|++ |..+++...
T Consensus 45 ~~~~~~~a~~la~~Fn~~~~~~~~~~~~i~~~~~~~v~~~~~~~~ 89 (189)
T PF02816_consen 45 EAQSQMLAQKLAEKFNKELRKEKSKPKKIDFLPSYVVYELKDKDP 89 (189)
T ss_dssp HHHHHHHHHHHHHHHHHCS---TT-SS--EE--EEEEEECTTT--
T ss_pred HHHHHHHHHHHHHHHhhhhccccCCCcccceeeeEEEEEecCCcc
Confidence 34667888888888888887322234677889988 655555443
No 174
>PF10296 DUF2404: Putative integral membrane protein conserved region (DUF2404); InterPro: IPR019411 This is entry represents a domain of unknown function found in mitochondrial distribution and morphology proteins Mdm12 and Mdm34, and in maintenance of mitochondrial morphology protein Mmm1. These proteins are components of the ERMES/MDM complex, which serves as a molecular tether to connect the endoplasmic reticulum and mitochondria [].
Probab=23.39 E-value=2.2e+02 Score=18.61 Aligned_cols=45 Identities=22% Similarity=0.448 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHhhccCCCCCcccceeccccccCCCCCccccEEEEecCCceEEEEEEEe
Q psy6344 23 EVMSKLLLAINKGLDKNTNKEAVVKCFPTYVQDLPNGKEKGKFLALDLGGTNFRVLIIYL 82 (142)
Q Consensus 23 ~i~~~f~~em~~gL~~~~~~~s~~~Mlps~v~~~P~G~E~G~fLalDlGGTnlRv~~V~L 82 (142)
.+.+.+.+.+.+.|++ ++ +|+|+..+ ..=-+|+|.+--.+..+++
T Consensus 16 ~~~~~i~~~L~~kL~~-------i~-~P~fl~~i-------~v~~~~lG~~~P~i~~~~~ 60 (91)
T PF10296_consen 16 AFRDKIKEKLQKKLNK-------IK-LPSFLDEI-------SVTELDLGDSPPIISNVRI 60 (91)
T ss_pred HHHHHHHHHHHHHHcc-------cc-CCCccCcE-------EEEEEECCCCCCEEEeccc
Confidence 4455566666666653 22 89988643 3445677765555444444
No 175
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=23.19 E-value=79 Score=28.34 Aligned_cols=19 Identities=26% Similarity=0.289 Sum_probs=16.2
Q ss_pred ccEEEEecCCceEEEEEEE
Q psy6344 63 GKFLALDLGGTNFRVLIIY 81 (142)
Q Consensus 63 G~fLalDlGGTnlRv~~V~ 81 (142)
...++||||.||-.|+...
T Consensus 19 ~~viGIDlGTT~S~va~~~ 37 (595)
T PRK01433 19 QIAVGIDFGTTNSLIAIAT 37 (595)
T ss_pred ceEEEEEcCcccEEEEEEe
Confidence 3579999999999998864
No 176
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=22.93 E-value=82 Score=25.89 Aligned_cols=18 Identities=11% Similarity=0.333 Sum_probs=16.6
Q ss_pred cEEEEecCCceEEEEEEE
Q psy6344 64 KFLALDLGGTNFRVLIIY 81 (142)
Q Consensus 64 ~fLalDlGGTnlRv~~V~ 81 (142)
-|+.||+|-|+.++++++
T Consensus 33 ~~~GIDiGStt~K~Vlld 50 (293)
T TIGR03192 33 ITCGIDVGSVSSQAVLVC 50 (293)
T ss_pred EEEEEEeCchhEEEEEEe
Confidence 479999999999999987
No 177
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=21.88 E-value=1.2e+02 Score=24.60 Aligned_cols=19 Identities=21% Similarity=0.497 Sum_probs=17.5
Q ss_pred EEEEecCCceEEEEEEEec
Q psy6344 65 FLALDLGGTNFRVLIIYLE 83 (142)
Q Consensus 65 fLalDlGGTnlRv~~V~Lg 83 (142)
.+.+|+||.++=+++|+.|
T Consensus 149 ~lVvDiGggttdvsvv~~g 167 (336)
T PRK13928 149 NMVVDIGGGTTDIAVLSLG 167 (336)
T ss_pred EEEEEeCCCeEEEEEEEeC
Confidence 7899999999999999984
No 178
>COG2967 ApaG Uncharacterized protein affecting Mg2+/Co2+ transport [Inorganic ion transport and metabolism]
Probab=20.97 E-value=91 Score=22.43 Aligned_cols=26 Identities=35% Similarity=0.629 Sum_probs=22.9
Q ss_pred cCCCCCccccEEEEecCCceEEEEEE
Q psy6344 55 DLPNGKEKGKFLALDLGGTNFRVLII 80 (142)
Q Consensus 55 ~~P~G~E~G~fLalDlGGTnlRv~~V 80 (142)
..|.|.-.|.|.-+|=.|..|.|.+=
T Consensus 90 ~Tp~G~M~GhY~M~~e~G~~F~v~Ip 115 (126)
T COG2967 90 DTPSGTMQGHYEMIDEDGETFDVAIP 115 (126)
T ss_pred cCCcceEEEEEEEecCCCcEEEeecC
Confidence 36889999999999999999999763
No 179
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=20.96 E-value=3.6e+02 Score=22.34 Aligned_cols=48 Identities=21% Similarity=0.280 Sum_probs=27.2
Q ss_pred ccceecccccc-----CCCCCccccEEEEecCCceEEEEEEEecCceEEEEEEEeec
Q psy6344 45 VVKCFPTYVQD-----LPNGKEKGKFLALDLGGTNFRVLIIYLEENHFKMESKVYSI 96 (142)
Q Consensus 45 ~~~Mlps~v~~-----~P~G~E~G~fLalDlGGTnlRv~~V~Lg~~~~~~~~~~~~i 96 (142)
.+.++|..+.. +|-....|. +.+|+||-+-=++++.+|+- +.++..++
T Consensus 123 ~V~li~ep~AaAiGaGl~i~~~~g~-miVDIG~GtTdiavislggi---v~s~si~~ 175 (326)
T PF06723_consen 123 KVYLIEEPIAAAIGAGLDIFEPRGS-MIVDIGGGTTDIAVISLGGI---VASRSIRI 175 (326)
T ss_dssp EEEEEEHHHHHHHHTT--TTSSS-E-EEEEE-SS-EEEEEEETTEE---EEEEEES-
T ss_pred EEEEecchHHHHhcCCCCCCCCCce-EEEEECCCeEEEEEEECCCE---EEEEEEEe
Confidence 55566655321 454555664 78999999999999998441 34555544
No 180
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain. Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl
Probab=20.92 E-value=3.3e+02 Score=20.04 Aligned_cols=29 Identities=21% Similarity=0.395 Sum_probs=21.3
Q ss_pred cccEEEEecCCceEEEEEEEecCceEEEE
Q psy6344 62 KGKFLALDLGGTNFRVLIIYLEENHFKME 90 (142)
Q Consensus 62 ~G~fLalDlGGTnlRv~~V~Lg~~~~~~~ 90 (142)
..+|.-+|++...+.+-+++|++++.++.
T Consensus 146 ~~syail~~~~~~~~~~~~~l~~~~~~~~ 174 (178)
T cd07394 146 IPSFVLMDIQGSKVVTYVYQLIDGEVKVE 174 (178)
T ss_pred CCeEEEEEecCCeEEEEEEEEECCcEEEE
Confidence 35899999988888888888844444443
No 181
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=20.87 E-value=1e+02 Score=25.23 Aligned_cols=16 Identities=13% Similarity=0.235 Sum_probs=14.4
Q ss_pred EEEEecCCceEEEEEE
Q psy6344 65 FLALDLGGTNFRVLII 80 (142)
Q Consensus 65 fLalDlGGTnlRv~~V 80 (142)
-++||+|..++|+.+-
T Consensus 6 ~vViD~Gs~~~k~G~a 21 (393)
T PF00022_consen 6 PVVIDNGSSTIKAGFA 21 (393)
T ss_dssp EEEEEECSSEEEEEET
T ss_pred EEEEECCCceEEEEEC
Confidence 5899999999999874
No 182
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=20.74 E-value=1.4e+02 Score=24.37 Aligned_cols=36 Identities=22% Similarity=0.412 Sum_probs=25.0
Q ss_pred cccceecccccc-CCCCCccccEEEEecCCceEEEEEEE
Q psy6344 44 AVVKCFPTYVQD-LPNGKEKGKFLALDLGGTNFRVLIIY 81 (142)
Q Consensus 44 s~~~Mlps~v~~-~P~G~E~G~fLalDlGGTnlRv~~V~ 81 (142)
..+.+.++.+.. ...|..+| |+||+|-+.-+|.-|-
T Consensus 124 ~~v~~~~~~~~a~~~~g~~tg--lVVD~G~~~t~v~pV~ 160 (393)
T PF00022_consen 124 PSVYFIPSPLLALYASGRTTG--LVVDIGYSSTSVVPVV 160 (393)
T ss_dssp SEEEEEEHHHHHHHHTTBSSE--EEEEESSS-EEEEEEE
T ss_pred ceeeeeecccccccccccccc--cccccceeeeeeeeee
Confidence 567777766643 34566655 9999999999987764
No 183
>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose. UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases.
Probab=20.69 E-value=1.9e+02 Score=23.72 Aligned_cols=58 Identities=16% Similarity=0.285 Sum_probs=33.3
Q ss_pred EEEEEEe-cCceEEEEEEEeecCCCcc-CCChhHHHHHHHHHHHHHhhhcCCCCCccceEEEEecc
Q psy6344 76 RVLIIYL-EENHFKMESKVYSIPQDIM-TGSGTQLFDHIAECLADFMRDNDVASERLPLGFTFSFP 139 (142)
Q Consensus 76 Rv~~V~L-g~~~~~~~~~~~~ip~~~~-~~~~~~lFd~ia~~i~~fl~~~~~~~~~l~lGfTFSFP 139 (142)
+||.|.| ||-.-++ -+..|+.+- ..++..|||++|++|...-+.. +..+|+-+.=||.
T Consensus 3 kvavl~LaGG~GTRL---G~~~pKg~~~v~~~~s~l~l~~~~i~~l~~~~---~~~iPl~iMtS~~ 62 (300)
T cd00897 3 KLVVLKLNGGLGTSM---GCTGPKSLIEVRDGKTFLDLTVQQIEHLNKTY---GVDVPLVLMNSFN 62 (300)
T ss_pred cEEEEEecCCccccc---CCCCCceeeecCCCCcHHHHHHHHHHHHHHHc---CCCceEEEECCCc
Confidence 6889999 6532222 222332211 1246789999999998744332 3446666655554
No 184
>KOG1405|consensus
Probab=20.63 E-value=80 Score=27.26 Aligned_cols=56 Identities=27% Similarity=0.436 Sum_probs=38.3
Q ss_pred cCHHHHHHHHHHHHHHHHHhhccCCCCCcccceeccccccCCCCCccccEEEEecCCceEEEEEE
Q psy6344 16 LSDEQLREVMSKLLLAINKGLDKNTNKEAVVKCFPTYVQDLPNGKEKGKFLALDLGGTNFRVLII 80 (142)
Q Consensus 16 l~~~~L~~i~~~f~~em~~gL~~~~~~~s~~~Mlps~v~~~P~G~E~G~fLalDlGGTnlRv~~V 80 (142)
|.+++|.+-+++.-..+.+||.. --+=.|-.+.++ .| .|+|+|.|+--+..|=-++
T Consensus 384 I~~~~Ll~n~~~vG~~l~~gL~~------Lq~~~p~~~~~~-RG--rGTF~a~d~ps~~~Rdk~i 439 (484)
T KOG1405|consen 384 IKREDLLNNVAHVGKALLKGLLE------LQAKYPGKINNL-RG--RGTFIAWDCPSGSIRDKLI 439 (484)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHH------HHHhCchhhhcc-cc--cceEEEEeCCChHHHHHHH
Confidence 57788888788888888888853 112245555432 23 8999999999888775443
No 185
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=20.18 E-value=32 Score=26.19 Aligned_cols=31 Identities=32% Similarity=0.510 Sum_probs=17.6
Q ss_pred ccceeccccccCCCCCccccEEE-EecCCceEE
Q psy6344 45 VVKCFPTYVQDLPNGKEKGKFLA-LDLGGTNFR 76 (142)
Q Consensus 45 ~~~Mlps~v~~~P~G~E~G~fLa-lDlGGTnlR 76 (142)
.++.+||.+. .-+|...+++.. .++||.+|.
T Consensus 149 ~i~~lPTlli-yk~G~~v~~ivG~~~~gg~~~~ 180 (192)
T cd02988 149 PDKNLPTILV-YRNGDIVKQFIGLLEFGGMNTT 180 (192)
T ss_pred CCCCCCEEEE-EECCEEEEEEeCchhhCCCCCC
Confidence 3455666653 456666666653 366666543
No 186
>TIGR02373 photo_yellow photoactive yellow protein. Members of this family are photoactive yellow protein, a cytosolic, 14-kDa light-sensing protein which has a 4-hydroxycinnamyl (p-coumaric acid) chromophore covalently linked to a Cys residue. The enzyme 4-coumarate--CoA ligase as described by TIGR02372 is required for its biosynthesis. The modified Cys is in a PAS (pfam00989) domain, frequently found in signal transducing proteins. Members are known in alpha and gamma Proteobacteria that include Rhodobacter capsulatus, Halorhodospira halophila, Rhodospirillum centenum, etc.
Probab=20.15 E-value=1.9e+02 Score=20.76 Aligned_cols=36 Identities=19% Similarity=0.507 Sum_probs=20.3
Q ss_pred hhHHHHHHHHHHHH------HhhhcCCCCCccceEEEEeccc
Q psy6344 105 GTQLFDHIAECLAD------FMRDNDVASERLPLGFTFSFPL 140 (142)
Q Consensus 105 ~~~lFd~ia~~i~~------fl~~~~~~~~~l~lGfTFSFP~ 140 (142)
+..||.-||=|.+. |........-.--++|+|.|..
T Consensus 58 Gr~FF~eVAPC~~~~~f~gRF~~g~~~g~Ld~~f~yvf~~~~ 99 (124)
T TIGR02373 58 GRNFFKEVAPCTDIPEFSGRFMEGVASGTLNAMFDYVFDYQM 99 (124)
T ss_pred chhhhhhcccccCCHHHHHHHHhhhhcCCCceEEEEEEEeec
Confidence 57999999988733 3321100111134678887754
Done!