RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6344
(142 letters)
>gnl|CDD|201171 pfam00349, Hexokinase_1, Hexokinase. Hexokinase (EC:2.7.1.1)
contains two structurally similar domains represented by
this family and pfam03727. Some members of the family
have two copies of each of these domains.
Length = 205
Score = 169 bits (430), Expect = 2e-54
Identities = 68/140 (48%), Positives = 86/140 (61%), Gaps = 3/140 (2%)
Query: 6 KIREHCKDLVLSDEQLREVMSKLLLAINKGLDKNTNKEAVVKCFPTYVQDLPNGKEKGKF 65
I E +S E LREV+ + + + KGL K A V PT+V+ P G EKG F
Sbjct: 5 AIDELLNQFRVSTETLREVVKRFISEMEKGLSKEGGNLAAVPMLPTFVRSTPTGTEKGDF 64
Query: 66 LALDLGGTNFRVLIIYLEENH-FKMESKVYSIPQDIMTGSGTQLFDHIAECLADFMRDN- 123
LALDLGGTNFRVL++ L N +M Y +P+++MTG+G QLFD IA+CL DFM +
Sbjct: 65 LALDLGGTNFRVLLVKLTGNGKVEMTQSKYRLPEELMTGTGEQLFDFIADCLKDFMDEQF 124
Query: 124 -DVASERLPLGFTFSFPLTQ 142
E LPLGFTFSFP +Q
Sbjct: 125 PLGKKEPLPLGFTFSFPCSQ 144
>gnl|CDD|240270 PTZ00107, PTZ00107, hexokinase; Provisional.
Length = 464
Score = 106 bits (266), Expect = 7e-28
Identities = 51/150 (34%), Positives = 77/150 (51%), Gaps = 22/150 (14%)
Query: 14 LVLSDEQLREVMSKLLLAINKGL-------DKNTNKEAVVKCFPTYVQDLPNGKEKGKFL 66
+S E+L+E++ L + +GL + E K + V +LP GKEKG +
Sbjct: 18 FTMSKEKLKELVDYFLYELVEGLEAHRRHRNLWIPNECSFKMLDSCVYNLPTGKEKGVYY 77
Query: 67 ALDLGGTNFRVLIIYLEENHFKMES--KVYSIPQDIMTG---------SGTQLFDHIAEC 115
A+D GGTNFR + + L KME +S+P+ + G + T LFDHIA+
Sbjct: 78 AIDFGGTNFRAVRVSLRGGG-KMERTQSKFSLPKSALLGEKGLLDKKATATDLFDHIAKS 136
Query: 116 LADFMRDNDVA---SERLPLGFTFSFPLTQ 142
+ M +N ++ +P+GFTFSFP TQ
Sbjct: 137 IKKMMEENGDPEDLNKPVPVGFTFSFPCTQ 166
>gnl|CDD|227359 COG5026, COG5026, Hexokinase [Carbohydrate transport and
metabolism].
Length = 466
Score = 105 bits (263), Expect = 2e-27
Identities = 49/140 (35%), Positives = 74/140 (52%), Gaps = 6/140 (4%)
Query: 7 IREHCKDLVLSDEQLREVMSKLLLAINKGLDKNTNKEAVVKCFPTYVQDLPNGKEKGKFL 66
+ E + + E LREV+ + + KGL + + PT+V LP G E G L
Sbjct: 21 VEELVESFTVPTEDLREVVKAFIEELEKGLQPKSGD--FLPMIPTWVAPLPTGNESGSVL 78
Query: 67 ALDLGGTNFRVLIIYLEENH-FKMESKVYSIPQDIMTG-SGTQLFDHIAECLADFMRDND 124
A+DLGGTN RV ++ L + F +E +P + S +LF IA+ LA F+++
Sbjct: 79 AIDLGGTNLRVCLVVLGGDGTFDIEQSKSFLPVECRDSESRDELFGFIADRLAAFIKEQH 138
Query: 125 VASE--RLPLGFTFSFPLTQ 142
+ +LP+GFTFS+PL Q
Sbjct: 139 PSGYGSKLPIGFTFSYPLNQ 158
>gnl|CDD|215226 PLN02405, PLN02405, hexokinase.
Length = 497
Score = 94.5 bits (235), Expect = 2e-23
Identities = 62/155 (40%), Positives = 82/155 (52%), Gaps = 23/155 (14%)
Query: 1 MSVRGKIREHCKDLVLSDEQLREVMSKLLLAINKGLDKNTNKEAVVKCFPTYVQDLPNGK 60
M + + E C + +LR+V + + ++ GL + +K +YV +LP+G
Sbjct: 38 MEILKEFEEDCATPI---GKLRQVADAMTVEMHAGLASEGGSK--LKMLISYVDNLPSGD 92
Query: 61 EKGKFLALDLGGTNFRVLIIYL---EENHFKMESKVYSIPQDIMTGSGTQLFDHIAECLA 117
EKG F ALDLGGTNFRVL + L + K E + SIP +MTGS LFD IA LA
Sbjct: 93 EKGLFYALDLGGTNFRVLRVLLGGKDGRVVKQEFEEVSIPPHLMTGSSDALFDFIAAALA 152
Query: 118 DFMRDNDVASE----RLP------LGFTFSFPLTQ 142
F VA+E LP LGFTFSFP+ Q
Sbjct: 153 KF-----VATEGEDFHLPPGRQRELGFTFSFPVKQ 182
>gnl|CDD|178502 PLN02914, PLN02914, hexokinase.
Length = 490
Score = 94.2 bits (234), Expect = 2e-23
Identities = 52/110 (47%), Positives = 65/110 (59%), Gaps = 18/110 (16%)
Query: 46 VKCFPTYVQDLPNGKEKGKFLALDLGGTNFRVLIIYL---EENHFKMESKVYSIPQDIMT 102
+K +YV LP+G EKG F ALDLGGTNFRVL + L +E E + SIPQ++M
Sbjct: 78 LKMILSYVDSLPSGNEKGLFYALDLGGTNFRVLRVQLGGKDERVIATEFEQVSIPQELMF 137
Query: 103 GSGTQLFDHIAECLADFMRDNDVASE----RLP------LGFTFSFPLTQ 142
G+ +LFD IA LA+F VA E LP +GFTFSFP+ Q
Sbjct: 138 GTSEELFDFIASGLANF-----VAKEGGKFHLPEGRKREIGFTFSFPVKQ 182
>gnl|CDD|215206 PLN02362, PLN02362, hexokinase.
Length = 509
Score = 91.5 bits (227), Expect = 2e-22
Identities = 51/131 (38%), Positives = 71/131 (54%), Gaps = 10/131 (7%)
Query: 20 QLREVMSKLLLAINKGLDKNTNKEAVVKCFPTYVQDLPNGKEKGKFLALDLGGTNFRVLI 79
+LR+V+ + + ++ GL + +K T+V DLP G E G + ALDLGGTNFRVL
Sbjct: 54 RLRQVVDAMAVEMHAGLASEGGSK--LKMLLTFVDDLPTGSEIGTYYALDLGGTNFRVLR 111
Query: 80 IYLEENHFKMESK---VYSIPQDIMTGSGTQLFDHIAECLADFMRDNDVASE-----RLP 131
+ L + S+ + IPQ +M + LFD IA L F+ + SE R
Sbjct: 112 VQLGGQRSSILSQDVERHPIPQHLMNSTSEVLFDFIASSLKQFVEKEENGSEFSQVRRRE 171
Query: 132 LGFTFSFPLTQ 142
LGFTFSFP+ Q
Sbjct: 172 LGFTFSFPVKQ 182
>gnl|CDD|178206 PLN02596, PLN02596, hexokinase-like.
Length = 490
Score = 65.3 bits (159), Expect = 2e-13
Identities = 36/100 (36%), Positives = 54/100 (54%), Gaps = 8/100 (8%)
Query: 51 TYVQDLPNGKEKGKFLALDLGGTNFRVLIIYL---EENHFKMESKVYSIPQDIMTGSGTQ 107
+YV LP+G EKG + L+L G+NF +L L E + + SIP +++ G+ +
Sbjct: 84 SYVASLPSGDEKGLYYGLNLRGSNFLLLRARLGGKNEPISDLYREEISIPSNVLNGTSQE 143
Query: 108 LFDHIAECLADFM-----RDNDVASERLPLGFTFSFPLTQ 142
LFD+IA LA F+ + D LGFT S+P+ Q
Sbjct: 144 LFDYIALELAKFVAEHPGDEADTPERVKKLGFTVSYPVDQ 183
>gnl|CDD|212657 cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide-Binding Domain of
the sugar kinase/HSP70/actin superfamily. This
superfamily includes the actin family, the HSP70 family
of molecular chaperones and nucleotide exchange factors,
the ROK (repressor, ORF, kinase) family, the hexokinase
family, the FGGY family (which includes glycerol kinase
and similar carbohydrate kinases such as rhamnulokinase
and xylulokinase), the exopolyphosphatase/guanosine
pentaphosphate phosphohydrolase/nucleoside triphosphate
diphosphohydrolase family, propionate kinase/acetate
kinase family, glycerol dehydratase reactivase,
2-hydroxyglutaryl-CoA dehydratase component A,
N-acetylglucosamine kinase, butyrate kinase 2,
Escherichia coli YeaZ and similar glycoproteases, the
cell shape-determining protein MreB, the plasmid DNA
segregation factor ParM, cell cycle proteins FtsA, Pili
assembly protein PilM, ethanolamine utilization protein
EutJ, and similar proteins. The nucleotide-binding site
residues are conserved; the nucleotide sits in a deep
cleft formed between the two lobes of the
nucleotide-binding domain (NBD). Substrate binding to
superfamily members is associated with closure of this
catalytic site cleft. The functional activities of
several members of the superfamily, including
hexokinases, actin, and HSP70s, are modulated by
allosteric effectors, which may act on the cleft
closure.
Length = 185
Score = 42.2 bits (99), Expect = 1e-05
Identities = 14/79 (17%), Positives = 31/79 (39%), Gaps = 6/79 (7%)
Query: 66 LALDLGGTNFRVLIIYLEENHFKMESKVYSIPQDIMTGSGT--QLFDHIAECLADFMRDN 123
L +D+G T+ + + L+ + ++ P +L + + E L + +R
Sbjct: 1 LGIDIGSTSTKAGVADLDGEI--LPEEIVPTPVGRPGAVTDLDELEEALRELLKEALRQL 58
Query: 124 DVASERLPLGFTFSFPLTQ 142
SE +G T + +
Sbjct: 59 K--SEIDAVGITEPGGVPK 75
>gnl|CDD|224851 COG1940, NagC, Transcriptional regulator/sugar kinase
[Transcription / Carbohydrate transport and metabolism].
Length = 314
Score = 33.2 bits (76), Expect = 0.026
Identities = 13/81 (16%), Positives = 28/81 (34%), Gaps = 5/81 (6%)
Query: 60 KEKGKFLALDLGGTNFRVLIIYLEENHFKMESKVYSIPQDIMTGSGTQLFDHIAECLADF 119
E L +D+GGT +V ++ L+ E P + + I +A+
Sbjct: 3 PEAMTVLGIDIGGTKIKVALVDLDGEILLRERIPTPTPDP-----EEAILEAILALVAEL 57
Query: 120 MRDNDVASERLPLGFTFSFPL 140
++ + +G +
Sbjct: 58 LKQAQGRVAIIGIGIPGPGDV 78
>gnl|CDD|221156 pfam11649, T4_neck-protein, Virus neck protein. This family of
protein represents gene product 14, a major component of
the neck in T4-like viruses along with gene product 13.
Gene product 14 is rich is beta-sheets. The formation of
the neck to the head of the bacteriophage is crucial for
the tail attachment.
Length = 247
Score = 29.3 bits (66), Expect = 0.61
Identities = 8/45 (17%), Positives = 17/45 (37%)
Query: 66 LALDLGGTNFRVLIIYLEENHFKMESKVYSIPQDIMTGSGTQLFD 110
L+L G + E+ + E+ + + ++ G G F
Sbjct: 201 PILNLDGIGDINIEEGAEDTEAEAEADDFVERELVVNGRGDSPFG 245
>gnl|CDD|129474 TIGR00378, cax, calcium/proton exchanger (cax). [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 349
Score = 28.7 bits (64), Expect = 1.1
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 50 PTYVQDLPNGKEKGKFLALDLGGTNFRVLIIYLEENHFKMESKVY 94
P L +GKE GK L L GT+ ++I+Y+ +F++ +
Sbjct: 134 PAARATLSHGKEDGKILNLSR-GTSIVIIIVYVLFLYFQLGTHHA 177
>gnl|CDD|212688 cd11738, HSPA4L_NBD, Nucleotide-binding domain of HSPA4L. Human
HSPA4L (also known as 70-kDa heat shock protein 4-like,
APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to
4q28) is expressed ubiquitously and predominantly in the
testis. It is required for normal spermatogenesis and
plays a role in osmotolerance. HSPA4L belongs to the
105/110 kDa heat shock protein (HSP105/110) subfamily of
the HSP70-like family. HSP105/110s are believed to
function generally as co-chaperones of HSP70 chaperones,
acting as nucleotide exchange factors (NEFs), to remove
ADP from their HSP70 chaperone partners during the ATP
hydrolysis cycle. HSP70 chaperones assist in protein
folding and assembly, and can direct incompetent
"client" proteins towards degradation. Like HSP70
chaperones, HSP105/110s have an N-terminal
nucleotide-binding domain (NBD) and a C-terminal
substrate-binding domain (SBD). For HSP70 chaperones,
the nucleotide sits in a deep cleft formed between the
two lobes of the NBD. The two subdomains of each lobe
change conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. Hsp70 chaperone activity is also
regulated by J-domain proteins.
Length = 383
Score = 28.5 bits (63), Expect = 1.3
Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 16 LSDEQLREVMSKLLLAINKGLDKNTNKEAVVKCFPTYVQDLPNGKEKGK-FLALDLGGTN 74
+D + R VM+ +A L AV + Y QDLP EK + + +D+G +
Sbjct: 147 FTDAERRSVMAAAQVAGLNCLRLMNETTAVALAYGIYKQDLPALDEKPRNVVFIDMGHSA 206
Query: 75 FRVLIIYLEENHFKMESKVY 94
++V + + K+ + +
Sbjct: 207 YQVSVCAFNKGKLKVLATTF 226
>gnl|CDD|198349 cd07771, FGGY_RhuK, L-rhamnulose kinases; a subfamily of the FGGY
family of carbohydrate kinases. This subfamily is
predominantly composed of bacterial L-rhamnulose
kinases (RhuK, also known as rhamnulokinase; EC
2.7.1.5), which are encoded by the rhaB gene and
catalyze the ATP-dependent phosphorylation of
L-rhamnulose to produce L-rhamnulose-1-phosphate and
ADP. Some uncharacterized homologous sequences are also
included in this subfamily. The prototypical member of
this subfamily is Escherichia coli RhuK, which exists
as a monomer composed of two large domains. The ATP
binding site is located in the cleft between the two
domains. This model includes both the N-terminal
domain, which adopts a ribonuclease H-like fold, and
the structurally related C-terminal domain. The
presence of divalent Mg2+ or Mn2+ is required for
catalysis. Although an intramolecular disulfide bridge
is present in Rhuk, disulfide formation is not
important to the regulation of RhuK enzymatic activity.
Members of this subfamily belong to the FGGY family of
carbohydrate kinases.
Length = 440
Score = 28.2 bits (64), Expect = 1.3
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 64 KFLALDLGGTNFRVLIIYLEENHFKME 90
LA+DLG ++ RV++ L+ +E
Sbjct: 1 NVLAVDLGASSGRVILGSLDGGKLTLE 27
>gnl|CDD|143445 cd07127, ALDH_PAD-PaaZ, Phenylacetic acid degradation proteins PaaZ
(Escherichia coli) and PaaN (Pseudomonas putida)-like.
Phenylacetic acid degradation (PAD) proteins PaaZ
(Escherichia coli) and PaaN (Pseudomonas putida) are
putative aromatic ring cleavage enzymes of the aerobic
PA catabolic pathway. PaaZ mutants were defective for
growth with PA as a sole carbon source due to
interruption of the putative ring opening system. This
CD is limited to bacterial monofunctional enzymes.
Length = 549
Score = 28.2 bits (63), Expect = 1.7
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
Query: 96 IPQD-IMTGSGTQLFDHIAECLAD----FMRDNDVASERL 130
+P+D I T G + FD +A LA + D A+ L
Sbjct: 347 VPRDGIQTDDGRKSFDEVAADLAAAIDGLLADPARAAALL 386
>gnl|CDD|223573 COG0499, SAM1, S-adenosylhomocysteine hydrolase [Coenzyme
metabolism].
Length = 420
Score = 28.0 bits (63), Expect = 1.9
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 80 IYLEENHFKMESKVYSIPQDI 100
IYL +NH K+E VY +P+++
Sbjct: 366 IYLVKNHGKLEPGVYRLPKEL 386
>gnl|CDD|176167 cd08478, PBP2_CrgA, The C-terminal substrate binding domain of
LysR-type transcriptional regulator CrgA, contains the
type 2 periplasmic binding domain. This CD represents
the substrate binding domain of LysR-type
transcriptional regulator (LTTR) CrgA. The LTTRs are
acting as both auto-repressors and activators of target
promoters, controlling operons involved in a wide
variety of cellular processes such as amino acid
biosynthesis, CO2 fixation, antibiotic resistance,
degradation of aromatic compounds, nodule formation of
nitrogen-fixing bacteria, and synthesis of virulence
factors, to name a few. In contrast to the tetrameric
form of other LTTRs, CrgA from Neisseria meningitides
assembles into an octameric ring, which can bind up to
four 63-bp DNA oligonucleotides. Phylogenetic cluster
analysis further showed that the CrgA-like regulators
form a subclass of the LTTRs that function as octamers.
The CrgA is an auto-repressor of its own gene and
activates the expression of the mdaB gene which coding
for an NADPH-quinone reductase and that its action is
increased by MBL (alpha-methylene-gamma-butyrolactone),
an inducer of NADPH-quinone oxidoreductase. The
structural topology of this substrate-binding domain is
most similar to that of the type 2 periplasmic binding
proteins (PBP2), which are responsible for the uptake of
a variety of substrates such as phosphate, sulfate,
polysaccharides, lysine/arginine/ornithine, and
histidine. The PBP2 bind their ligand in the cleft
between these domains in a manner resembling a Venus
flytrap. After binding their specific ligand with high
affinity, they can interact with a cognate membrane
transport complex comprised of two integral membrane
domains and two cytoplasmically located ATPase domains.
This interaction triggers the ligand translocation
across the cytoplasmic membrane energized by ATP
hydrolysis.
Length = 199
Score = 27.7 bits (62), Expect = 1.9
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 115 CLADFMRDNDVASERL 130
CL+DFM D D+A RL
Sbjct: 148 CLSDFMTDKDIAEGRL 163
>gnl|CDD|240619 cd00401, SAHH, S-Adenosylhomocysteine Hydrolase, NAD-binding and
catalytic domains. S-adenosyl-L-homocysteine hydrolase
(SAHH, AdoHycase) catalyzes the hydrolysis of
S-adenosyl-L-homocysteine (AdoHyc) to form adenosine
(Ado) and homocysteine (Hcy). The equilibrium lies far
on the side of AdoHyc synthesis, but in nature the
removal of Ado and Hyc is sufficiently fast, so that the
net reaction is in the direction of hydrolysis. Since
AdoHyc is a potent inhibitor of S-adenosyl-L-methionine
dependent methyltransferases, AdoHycase plays a critical
role in the modulation of the activity of various
methyltransferases. The enzyme forms homotetramers, with
each monomer binding one molecule of NAD+.
Length = 402
Score = 27.8 bits (63), Expect = 2.3
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 80 IYLEENHFKMESKVYSIPQDI 100
I L +N K+E VY +P+++
Sbjct: 352 IELWKNRDKLEPGVYVLPKEL 372
>gnl|CDD|235488 PRK05476, PRK05476, S-adenosyl-L-homocysteine hydrolase;
Provisional.
Length = 425
Score = 27.8 bits (63), Expect = 2.4
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 80 IYLEENHFKMESKVYSIPQDI 100
I L N K+E VY +P+++
Sbjct: 369 IELFTNRGKLEPGVYVLPKEL 389
>gnl|CDD|215637 PLN03223, PLN03223, Polycystin cation channel protein; Provisional.
Length = 1634
Score = 27.2 bits (60), Expect = 3.3
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
Query: 18 DEQLREVMSKLLLAINKGLDKNTNKEAVVKCFPTYVQDLPNGKEKGKFLAL 68
+E RE K+ +NK LD+ K + +C V + +K K L
Sbjct: 1482 EEAFREEKEKVFTYLNKELDEAGLKRVLRRC----VIETYQKTDKSKVLLR 1528
>gnl|CDD|182251 PRK10119, PRK10119, putative hydrolase; Provisional.
Length = 231
Score = 27.0 bits (60), Expect = 3.4
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 85 NHFKMESKVYSIPQDIMTGSGTQLFDHIAECLADFM 120
+HF+ K+ +PQ + T G QL H A+ L +FM
Sbjct: 172 DHFQT--KLLKLPQTMQTERGKQLAQHNADFLVEFM 205
>gnl|CDD|233032 TIGR00580, mfd, transcription-repair coupling factor (mfd). All
proteins in this family for which functions are known
are DNA-dependent ATPases that function in the process
of transcription-coupled DNA repair in which the repair
of the transcribed strand of actively transcribed genes
is repaired at a higher rate than the repair of
non-transcribed regions of the genome and than the
non-transcribed strand of the same gene. This family is
based on the phylogenomic analysis of JA Eisen (1999,
Ph.D. Thesis, Stanford University). This family is
closely related to the RecG and UvrB families [DNA
metabolism, DNA replication, recombination, and repair].
Length = 926
Score = 27.3 bits (61), Expect = 3.7
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 4 RGKIREHCKDLVLSDEQLREVMSKLLLAINK 34
R K + + L + L E K L AI +
Sbjct: 756 RSKKKAYAYLLYPHQKALTEDAQKRLEAIQE 786
>gnl|CDD|235751 PRK06241, PRK06241, phosphoenolpyruvate synthase; Validated.
Length = 871
Score = 26.8 bits (60), Expect = 5.0
Identities = 11/17 (64%), Positives = 12/17 (70%)
Query: 98 QDIMTGSGTQLFDHIAE 114
QDI T SG +LFD I E
Sbjct: 456 QDIQTKSGDELFDFILE 472
>gnl|CDD|172497 PRK13996, PRK13996, potassium-transporting ATPase subunit C;
Provisional.
Length = 197
Score = 26.4 bits (58), Expect = 5.5
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 85 NHFKMESKVYSIPQDIMTGSGTQLFDHIAECLADFMRD 122
NH + + K IP D++T SG+ L HI+ A + D
Sbjct: 114 NHPEQDEK--PIPVDLVTCSGSGLDPHISVAAAKYQVD 149
>gnl|CDD|219855 pfam08463, EcoEI_R_C, EcoEI R protein C-terminal. The
restriction enzyme EcoEI recognises 5'-GAGN(7)ATGC-3'
and is composed of the three proteins R, M, and S. The
domain described here is found at the C-terminus of the
R protein (HsdR) which is required for both nuclease
and ATPase activity.
Length = 162
Score = 26.1 bits (58), Expect = 5.5
Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 5/60 (8%)
Query: 2 SVRGKIREHCKDL-----VLSDEQLREVMSKLLLAINKGLDKNTNKEAVVKCFPTYVQDL 56
R IREH D+ + ++ L K L ++ ++E + + + DL
Sbjct: 9 KFREYIREHFDDIEALQKLWNNPPLTREDLKELEEKLIDDEELFSEERLQEAYEDIAADL 68
>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional.
Length = 3956
Score = 26.7 bits (59), Expect = 5.9
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 94 YSIPQDIMTGSGTQLFDHIAECLADFMRDND-VASERLPLG 133
Y +P D L DH+A L D+M + +PLG
Sbjct: 3538 YVVPADPQGDWRETLRDHLAASLPDYMVPAQLLVLAAMPLG 3578
>gnl|CDD|240227 PTZ00009, PTZ00009, heat shock 70 kDa protein; Provisional.
Length = 653
Score = 26.7 bits (59), Expect = 6.0
Identities = 27/99 (27%), Positives = 39/99 (39%), Gaps = 35/99 (35%)
Query: 31 AINKGLDKNTNKEAVVKCFPTYVQDLPNGKEKGKFLALDLGGTNFRVLIIYLEENHFKME 90
AI GLDK + E V L DLGG F V ++ +E+ F+++
Sbjct: 181 AIAYGLDKKGDGEKNV-------------------LIFDLGGGTFDVSLLTIEDGIFEVK 221
Query: 91 SKVYSIPQDIMTGSGTQL----FDH--IAECLADFMRDN 123
+ T T L FD+ + C+ DF R N
Sbjct: 222 A----------TAGDTHLGGEDFDNRLVEFCVQDFKRKN 250
>gnl|CDD|234955 PRK01433, hscA, chaperone protein HscA; Provisional.
Length = 595
Score = 26.4 bits (58), Expect = 7.8
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 58 NGKEKGKFLALDLGGTNFRVLIIYLEENHFKM 89
N +KG +L DLGG F V I+ ++E F++
Sbjct: 188 NKNQKGCYLVYDLGGGTFDVSILNIQEGIFQV 219
>gnl|CDD|212675 cd10233, HSPA1-2_6-8-like_NBD, Nucleotide-binding domain of
HSPA1-A, -B, -L, HSPA-2, -6, -7, -8, and similar
proteins. This subfamily includes human HSPA1A (70-kDa
heat shock protein 1A, also known as HSP72; HSPA1;
HSP70I; HSPA1B; HSP70-1; HSP70-1A), HSPA1B (70-kDa heat
shock protein 1B, also known as HSPA1A; HSP70-2;
HSP70-1B), and HSPA1L (70-kDa heat shock protein 1-like,
also known as HSP70T; hum70t; HSP70-1L; HSP70-HOM). The
genes for these three HSPA1 proteins map in close
proximity on the major histocompatibility complex (MHC)
class III region on chromosome 6, 6p21.3. This subfamily
also includes human HSPA8 (heat shock 70kDa protein 8,
also known as LAP1; HSC54; HSC70; HSC71; HSP71; HSP73;
NIP71; HSPA10; the HSPA8 gene maps to 11q24.1), human
HSPA2 (70-kDa heat shock protein 2, also known as
HSP70-2; HSP70-3, the HSPA2 gene maps to 14q24.1), human
HSPA6 (also known as heat shock 70kDa protein 6
(HSP70B') gi 94717614, the HSPA6 gene maps to 1q23.3),
human HSPA7 (heat shock 70kDa protein 7 , also known as
HSP70B; the HSPA7 gene maps to 1q23.3) and Saccharmoyces
cerevisiae Stress-Seventy subfamily B/Ssb1p. This
subfamily belongs to the heat shock protein 70 (HSP70)
family of chaperones that assist in protein folding and
assembly and can direct incompetent "client" proteins
towards degradation. Typically, HSP70s have a
nucleotide-binding domain (NBD) and a substrate-binding
domain (SBD). The nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is regulated by various co-chaperones: J-domain
proteins and nucleotide exchange factors (NEFs).
Associations of polymorphisms within the MHC-III HSP70
gene locus with longevity, systemic lupus erythematosus,
Meniere's disease, noise-induced hearing loss,
high-altitude pulmonary edema, and coronary heart
disease, have been found. HSPA2 is involved in cancer
cell survival, is required for maturation of male
gametophytes, and is linked to male infertility. The
induction of HSPA6 is a biomarker of cellular stress.
HSPA8 participates in the folding and trafficking of
client proteins to different subcellular compartments,
and in the signal transduction and apoptosis process; it
has been shown to protect cardiomyocytes against
oxidative stress partly through an interaction with
alpha-enolase. S. cerevisiae Ssb1p, is part of the
ribosome-associated complex (RAC), it acts as a
chaperone for nascent polypeptides, and is important for
translation fidelity; Ssb1p is also a [PSI+]
prion-curing factor.
Length = 376
Score = 26.2 bits (58), Expect = 8.1
Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 19/61 (31%)
Query: 31 AINKGLDKNTNKEAVVKCFPTYVQDLPNGKEKGKFLALDLGGTNFRVLIIYLEENHFKME 90
AI GLDK E V L DLGG F V ++ +E+ F+++
Sbjct: 175 AIAYGLDKKGGGERNV-------------------LIFDLGGGTFDVSLLTIEDGIFEVK 215
Query: 91 S 91
+
Sbjct: 216 A 216
>gnl|CDD|213572 TIGR00936, ahcY, adenosylhomocysteinase. This enzyme hydrolyzes
adenosylhomocysteine as part of a cycle for the
regeneration of the methyl donor S-adenosylmethionine.
Species that lack this enzyme are likely to have
adenosylhomocysteine nucleosidase (EC 3.2.2.9), an
enzyme which also acts as 5'-methyladenosine
nucleosidase (see TIGR01704) [Energy metabolism, Amino
acids and amines].
Length = 407
Score = 25.8 bits (57), Expect = 9.3
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 80 IYLEENHFKMESKVYSIPQDI 100
YL +NH K+E VY +P+++
Sbjct: 353 EYLWKNHDKLEPGVYRLPKEL 373
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.139 0.400
Gapped
Lambda K H
0.267 0.0707 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,258,610
Number of extensions: 647780
Number of successful extensions: 725
Number of sequences better than 10.0: 1
Number of HSP's gapped: 710
Number of HSP's successfully gapped: 48
Length of query: 142
Length of database: 10,937,602
Length adjustment: 87
Effective length of query: 55
Effective length of database: 7,078,804
Effective search space: 389334220
Effective search space used: 389334220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.6 bits)