RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6344
(142 letters)
>3f9m_A Glucokinase; hexokinase IV, ATP-binding, diabetes mellitus,
mutation, glycolysis, nucleotide-binding, transfera;
HET: GLC MRK; 1.50A {Homo sapiens} PDB: 3fgu_A* 3id8_A*
3idh_A* 3vev_A* 3vf6_A* 3qic_A* 3s41_A* 4dhy_A* 4dch_A*
3vey_A* 1v4s_A* 3a0i_X* 3fr0_A* 3goi_A* 3imx_A* 3h1v_X*
1v4t_A*
Length = 470
Score = 152 bits (384), Expect = 3e-45
Identities = 61/142 (42%), Positives = 95/142 (66%), Gaps = 5/142 (3%)
Query: 6 KIREHCKDLVLSDEQLREVMSKLLLAINKGLDKNTNKEAVVKCFPTYVQDLPNGKEKGKF 65
K+ + + L +E L++VM ++ +++GL T++EA VK PTYV+ P G E G F
Sbjct: 20 KVEQILAEFQLQEEDLKKVMRRMQKEMDRGLRLETHEEASVKMLPTYVRSTPEGSEVGDF 79
Query: 66 LALDLGGTNFRVLIIYLEENH-----FKMESKVYSIPQDIMTGSGTQLFDHIAECLADFM 120
L+LDLGGTNFRV+++ + E K + ++YSIP+D MTG+ LFD+I+EC++DF+
Sbjct: 80 LSLDLGGTNFRVMLVKVGEGEEGQWSVKTKHQMYSIPEDAMTGTAEMLFDYISECISDFL 139
Query: 121 RDNDVASERLPLGFTFSFPLTQ 142
+ + ++LPLGFTFSFP+
Sbjct: 140 DKHQMKHKKLPLGFTFSFPVRH 161
>1bdg_A Hexokinase; phosphotransferase; HET: GLC; 2.60A {Schistosoma
mansoni} SCOP: c.55.1.3 c.55.1.3
Length = 451
Score = 151 bits (383), Expect = 4e-45
Identities = 63/139 (45%), Positives = 90/139 (64%), Gaps = 2/139 (1%)
Query: 6 KIREHCKDLVLSDEQLREVMSKLLLAINKGLDKNTNKEAVVKCFPTYVQDLPNGKEKGKF 65
K+ E K LS E+ ++ ++ GL K+TN+++ +K FP+YV PNG E G F
Sbjct: 11 KVVEILKPFDLSVVDYEEICDRMGESMRLGLQKSTNEKSSIKMFPSYVTKTPNGTETGNF 70
Query: 66 LALDLGGTNFRVLIIYLEENH--FKMESKVYSIPQDIMTGSGTQLFDHIAECLADFMRDN 123
LALDLGGTN+RVL + LE +++ + Y IP + M+GSGT+LF +IAE LADF+ +N
Sbjct: 71 LALDLGGTNYRVLSVTLEGKGKSPRIQERTYCIPAEKMSGSGTELFKYIAETLADFLENN 130
Query: 124 DVASERLPLGFTFSFPLTQ 142
+ ++ LGFTFSFP Q
Sbjct: 131 GMKDKKFDLGFTFSFPCVQ 149
>1cza_N Hexokinase type I; structurally homologous domains, transferase;
HET: GLC G6P ADP; 1.90A {Homo sapiens} SCOP: c.55.1.3
c.55.1.3 c.55.1.3 c.55.1.3 PDB: 1dgk_N* 1hkb_A* 1qha_A*
1hkc_A* 1bg3_A* 2nzt_A*
Length = 917
Score = 147 bits (372), Expect = 3e-42
Identities = 64/140 (45%), Positives = 94/140 (67%), Gaps = 3/140 (2%)
Query: 6 KIREHCKDLVLSDEQLREVMSKLLLAINKGLDKNTNKEAVVKCFPTYVQDLPNGKEKGKF 65
KI ++ + LSDE L ++M++ + GL ++ N A VK PT+V+ +P+G EKG F
Sbjct: 21 KIDKYLYAMRLSDETLIDIMTRFRKEMKNGLSRDFNPTATVKMLPTFVRSIPDGSEKGDF 80
Query: 66 LALDLGGTNFRVLIIYLEENH---FKMESKVYSIPQDIMTGSGTQLFDHIAECLADFMRD 122
+ALDLGG++FR+L + + MES+VY P++I+ GSG+QLFDH+AECL DFM
Sbjct: 81 IALDLGGSSFRILRVQVNHEKNQNVHMESEVYDTPENIVHGSGSQLFDHVAECLGDFMEK 140
Query: 123 NDVASERLPLGFTFSFPLTQ 142
+ ++LP+GFTFSFP Q
Sbjct: 141 RKIKDKKLPVGFTFSFPCQQ 160
Score = 138 bits (348), Expect = 5e-39
Identities = 61/137 (44%), Positives = 86/137 (62%), Gaps = 3/137 (2%)
Query: 9 EHCKDLVLSDEQLREVMSKLLLAINKGLDKNTNKEAVVKCFPTYVQDLPNGKEKGKFLAL 68
E L+ + L EV ++ + GL K T+ AVVK P++V+ P+G E G FLAL
Sbjct: 472 ETLAHFHLTKDMLLEVKKRMRAEMELGLRKQTHNNAVVKMLPSFVRRTPDGTENGDFLAL 531
Query: 69 DLGGTNFRVLIIYLEENH---FKMESKVYSIPQDIMTGSGTQLFDHIAECLADFMRDNDV 125
DLGGTNFRVL++ + +M +K+Y+IP +IM G+G +LFDHI C++DF+ +
Sbjct: 532 DLGGTNFRVLLVKIRSGKKRTVEMHNKIYAIPIEIMQGTGEELFDHIVSCISDFLDYMGI 591
Query: 126 ASERLPLGFTFSFPLTQ 142
R+PLGFTFSFP Q
Sbjct: 592 KGPRMPLGFTFSFPCQQ 608
>3hm8_A Hexokinase-3; glucose, glucose-6-phosphate, non-protein kinase,
structural genomics consortium, SGC, A enzyme,
ATP-binding, glycolysis; HET: GLC BG6; 2.80A {Homo
sapiens}
Length = 445
Score = 141 bits (357), Expect = 3e-41
Identities = 59/139 (42%), Positives = 88/139 (63%), Gaps = 4/139 (2%)
Query: 4 RGKIREHCKDLVLSDEQLREVMSKLLLAINKGLDKNTNKEAVVKCFPTYVQDLPNGKEKG 63
R + E L+ +QL V +++ A+ KGL + ++ PT+V+ P+G E+G
Sbjct: 3 RRLLEETLAPFRLNHDQLAAVQAQMRKAMAKGLRGEASS---LRMLPTFVRATPDGSERG 59
Query: 64 KFLALDLGGTNFRVLIIYLEENHFKMESKVYSIPQDIMTGSGTQLFDHIAECLADFMRDN 123
FLALDLGGTNFRVL++ + ++ S++YSIP+ + GSG QLFDHI +C+ DF +
Sbjct: 60 DFLALDLGGTNFRVLLVRVTTG-VQITSEIYSIPETVAQGSGQQLFDHIVDCIVDFQQKQ 118
Query: 124 DVASERLPLGFTFSFPLTQ 142
++ + LPLGFTFSFP Q
Sbjct: 119 GLSGQSLPLGFTFSFPCRQ 137
>2yhx_A Hexokinase B; transferase(phosphoryl,alcohol acceptr); HET: OTG;
2.10A {Saccharomyces cerevisiae} SCOP: i.12.1.1 PDB:
1hkg_A
Length = 457
Score = 140 bits (354), Expect = 7e-41
Identities = 29/138 (21%), Positives = 53/138 (38%), Gaps = 6/138 (4%)
Query: 7 IREHCKDLVLSDEQLREVMSKLLLAINKGLDKNTNKEAVVKCFPTYVQDLPNGKEKGKFL 66
+ H ++ L+ V+S + D + A + P +V +G + G FL
Sbjct: 9 VEVHXXVFIVPPXILQAVVS----ILTTRXDDXDSSAASIPMVPGWVLKQVSGAQAGSFL 64
Query: 67 ALDLGGTNFRVLIIYLEENH-FKMESKVYSIPQDIMTGSGTQLFDHIAECLADFMRDNDV 125
A+ +GG + V++I L + + T + L+ + A A F
Sbjct: 65 AIVMGGGDLEVILISLAGRQESSIXASRSLAAAMSTTAIPSDLWGNXAXSNAAFSSXEFS 124
Query: 126 -ASERLPLGFTFSFPLTQ 142
+ +PLGFTF +
Sbjct: 125 SXAGSVPLGFTFXEAGAK 142
>3o8m_A Hexokinase; rnaseh-like fold, glycolysis, glucose repression
binding, MIG1 binding, transferase; HET: GLC BGC; 1.42A
{Kluyveromyces lactis} PDB: 3o1b_A 3o08_A* 3o1w_A*
3o5b_A* 3o4w_A 3o80_A* 3o6w_A* 1ig8_A 3b8a_X*
Length = 485
Score = 135 bits (340), Expect = 1e-38
Identities = 55/144 (38%), Positives = 82/144 (56%), Gaps = 6/144 (4%)
Query: 2 SVRGKIREHCKDLVLSDEQLREVMSKLLLAINKGLDKNTNKEAVVKCFPTYVQDLPNGKE 61
++ +I +S E++R ++ + ++KGL K + P +V + P GKE
Sbjct: 22 NLMEQIHGLETLFTVSSEKMRSIVKHFISELDKGLSKKGGN---IPMIPGWVVEYPTGKE 78
Query: 62 KGKFLALDLGGTNFRVLIIYLEENH-FKMESKVYSIPQDIMTGSGTQLFDHIAECLADFM 120
G FLALDLGGTN RV+++ L NH F Y +P + TG+ QL+ IA+CL +F+
Sbjct: 79 TGDFLALDLGGTNLRVVLVKLGGNHDFDTTQNKYRLPDHLRTGTSEQLWSFIAKCLKEFV 138
Query: 121 RDN--DVASERLPLGFTFSFPLTQ 142
+ D SE LPLGFTFS+P +Q
Sbjct: 139 DEWYPDGVSEPLPLGFTFSYPASQ 162
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.5 bits (104), Expect = 3e-06
Identities = 24/134 (17%), Positives = 47/134 (35%), Gaps = 15/134 (11%)
Query: 10 HCKDLVLS-DEQLREVMSKL------LLAINKGLDKNTNKEAVVKCFPTYVQDLPNGKEK 62
CK L+ + +Q+ + +S L + L + K ++K QDLP
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT 324
Query: 63 GKFLALDLGGTNFRVLII----YLEENHFKMESKVYSIPQDIMTGSGTQLFDHIAECLAD 118
L + + R + + N K+ + + S + ++FD L+
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR----LSV 380
Query: 119 FMRDNDVASERLPL 132
F + + L L
Sbjct: 381 FPPSAHIPTILLSL 394
Score = 26.7 bits (58), Expect = 3.0
Identities = 24/135 (17%), Positives = 42/135 (31%), Gaps = 41/135 (30%)
Query: 13 DLVLSDEQLREVMSKLL--LAINKGLDKNTNKEAVVKCFPTYVQD---------LPNGKE 61
+L + E + ++ I K D + P Y+ L N +
Sbjct: 434 ELKVKLENEYALHRSIVDHYNIPKTFDSD-------DLIPPYLDQYFYSHIGHHLKNIEH 486
Query: 62 KGKFLALDLGGTNFRVLIIYLEENHFKMESKVYSIPQDIMTGSGTQLFDHIAECLAD--- 118
+ T FR +++L+ F +E K+ + I L
Sbjct: 487 PERM-------TLFR--MVFLDFR-F-LEQKI------RHDSTAWNASGSILNTLQQLKF 529
Query: 119 ---FMRDNDVASERL 130
++ DND ERL
Sbjct: 530 YKPYICDNDPKYERL 544
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.5 bits (89), Expect = 4e-04
Identities = 27/170 (15%), Positives = 49/170 (28%), Gaps = 63/170 (37%)
Query: 16 LSDEQLREVMSKLLLAINKGLDKNTNKEAVVKCFPTY----VQDLPNGK----------- 60
L + + +KLL + L K + ++K + + P K
Sbjct: 96 LEGNDIHALAAKLLQENDTTLVK---TKELIKNY--ITARIMAKRPFDKKSNSALFRAVG 150
Query: 61 -EKGKFLALDLGG---TNFRVLIIYLEENHFKMESKVYSIPQDIMTGSGTQLFDHIAECL 116
+ +A+ GG T+ Y EE + +Y ++ L AE L
Sbjct: 151 EGNAQLVAI-FGGQGNTD-----DYFEE----L-RDLYQTYHVLVG----DLIKFSAETL 195
Query: 117 ADFMRDNDVASERLPLGF---------------------TFSFP---LTQ 142
++ +R A + G S P + Q
Sbjct: 196 SELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQ 245
Score = 29.6 bits (66), Expect = 0.33
Identities = 28/138 (20%), Positives = 42/138 (30%), Gaps = 55/138 (39%)
Query: 2 SVR------GKIREHC----KDLVLSDEQLREVMSKLLLAINKGLDKN----TNKEAVVK 47
S R G + EH QL+E +K+L +G + T E V K
Sbjct: 5 STRPLTLSHGSL-EHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGK 63
Query: 48 CFPTYVQDLPNGKEKGKFLALDLGGTNFRVLIIYLEENHFKMESKVYSIPQDIMTGSGTQ 107
F YV L + G+F +VL + L F E+
Sbjct: 64 -FLGYVSSLVEPSKVGQFD---------QVLNLCL--TEF--EN---------------- 93
Query: 108 LFDHIAECLADFMRDNDV 125
++ ND+
Sbjct: 94 ----------CYLEGNDI 101
>1woq_A Inorganic polyphosphate/ATP-glucomannokinase; transferase; HET:
BGC; 1.80A {Arthrobacter SP} SCOP: c.55.1.10 c.55.1.10
Length = 267
Score = 36.2 bits (84), Expect = 0.001
Identities = 15/78 (19%), Positives = 32/78 (41%), Gaps = 3/78 (3%)
Query: 59 GKEKGKFLALDLGGTNFRVLIIYLEENHFKMESKVYSIPQDIMTGSGTQLFDHIAECLAD 118
+ + +D+GGT + I+ L++ E PQ + + + +A +A+
Sbjct: 8 SHKNAPLIGIDIGGTGIKGGIVDLKKGKLLGERFRVPTPQP---ATPESVAEAVALVVAE 64
Query: 119 FMRDNDVASERLPLGFTF 136
+ + P+G TF
Sbjct: 65 LSARPEAPAAGSPVGVTF 82
>2uyt_A Rhamnulokinase; rhamnose degradation, IN-LINE phosphoryl transfer,
hexokinas actin superfamily, L-rhamnulose kinase,
rhamnose metabolism kinase; HET: LRH ADP; 1.55A
{Escherichia coli} PDB: 2cgk_A 2cgj_A* 2cgl_A*
Length = 489
Score = 31.1 bits (71), Expect = 0.093
Identities = 12/79 (15%), Positives = 24/79 (30%), Gaps = 12/79 (15%)
Query: 65 FLALDLGGTNFRVLIIYLEENHFKMESKVYSIPQDIMTGSG-------TQLFDHIAECLA 117
+A+DLG ++ RV++ E + + + + L I L
Sbjct: 6 CVAVDLGASSGRVMLARYERECRSLTLREIHRFNNGLHSQNGYVTWDVDSLESAIRLGLN 65
Query: 118 DFMRDN-DVASERLPLGFT 135
+ S +G
Sbjct: 66 KVCAAGIAIDS----IGID 80
>1sz2_A Glucokinase, glucose kinase; ATP-dependent, glucose binding,
transferase; HET: MSE BGC; 2.20A {Escherichia coli}
SCOP: c.55.1.7 PDB: 1q18_A*
Length = 332
Score = 30.5 bits (68), Expect = 0.16
Identities = 11/69 (15%), Positives = 26/69 (37%), Gaps = 11/69 (15%)
Query: 65 FLALDLGGTNFRVLIIYLEENHFKMESKVYSIPQDIMTGSGTQLFDHIAECLADFMRDND 124
L D+GGTN R+ + + ++K YS + + + ++ ++
Sbjct: 16 ALVGDVGGTNARLALCDIASGEIS-QAKTYS----------GLDYPSLEAVIRVYLEEHK 64
Query: 125 VASERLPLG 133
V + +
Sbjct: 65 VEVKDGCIA 73
>3epq_A Putative fructokinase; SCRK, ADP binding, PSI2, MCSG, structural
GENO protein structure initiative, midwest center for
structural genomics; HET: MLY MSE MLZ ADP; 1.66A
{Bacillus subtilis} PDB: 1xc3_A 3ohr_A* 3lm9_A*
Length = 302
Score = 29.1 bits (65), Expect = 0.42
Identities = 8/63 (12%), Positives = 19/63 (30%), Gaps = 12/63 (19%)
Query: 65 FLALDLGGTNFRVLIIYLEENHFKMESKVYSIPQDIMTGSGTQLFDHIAECLADFMRDND 124
++ GGT F + + ++ P T + D E + +
Sbjct: 5 LGGIEAGGTXFVCAVG---REDGTIIDRI-EFP--------TXMPDETIEXVIQYFSQFS 52
Query: 125 VAS 127
+ +
Sbjct: 53 LQA 55
>3lm2_A Putative kinase; structural genomics, joint center for struc
genomics, JCSG, protein structure initiative, PSI-2,
transf; HET: MSE; 1.70A {Agrobacterium tumefaciens}
Length = 226
Score = 28.9 bits (65), Expect = 0.53
Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 9/63 (14%)
Query: 60 KEKGKFLALDLGGTNFRVLIIYLEENHFKMESKVYSIPQDIMTGSGTQLFDHIAECLADF 119
E LA+D+GG++ ++ + E K+ES +++ + D
Sbjct: 3 AEDQTVLAIDIGGSHVKIGLSTDGEER-KVESGKTMTGPEMV--------AAVTAMAKDM 53
Query: 120 MRD 122
D
Sbjct: 54 TYD 56
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein
structure initiative, midwest center for structural
genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP:
a.4.5.63 c.55.1.10 c.55.1.10
Length = 429
Score = 28.8 bits (65), Expect = 0.59
Identities = 9/70 (12%), Positives = 22/70 (31%), Gaps = 6/70 (8%)
Query: 61 EKGKFLALDLGGTNFRVLIIYLEENHFKMESKVYSIPQDIMTGSGTQLFDHIAECLADFM 120
+FL++ LG + + L + DI + + + +F
Sbjct: 106 LGWQFLSMRLGRGYLTIALHELGGE------VLIDTKIDIHEIDQDDVLARLLFEIEEFF 159
Query: 121 RDNDVASERL 130
+ +R+
Sbjct: 160 QTYAAQLDRV 169
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA
binding P helix-turn-helix, phosphotransferase system;
2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10
c.55.1.10 PDB: 3bp8_A
Length = 406
Score = 28.0 bits (63), Expect = 0.97
Identities = 13/70 (18%), Positives = 22/70 (31%), Gaps = 6/70 (8%)
Query: 61 EKGKFLALDLGGTNFRVLIIYLEENHFKMESKVYSIPQDIMTGSGTQLFDHIAECLADFM 120
E +L+L + + + L V Q++ L D I + F
Sbjct: 83 EAWHYLSLRISRGEIFLALRDLSSK------LVVEESQELALKDDLPLLDRIISHIDQFF 136
Query: 121 RDNDVASERL 130
+ ERL
Sbjct: 137 IRHQKKLERL 146
>3h6e_A Carbohydrate kinase, FGGY; novosphingobium aromaticivorans,strain
12444, SGX, transferase; 2.50A {Novosphingobium
aromaticivorans}
Length = 482
Score = 28.2 bits (63), Expect = 0.99
Identities = 12/75 (16%), Positives = 22/75 (29%), Gaps = 17/75 (22%)
Query: 62 KGKFLALDLGGTNFRVLII-----YLEENHFKMESKVYSIP----QDIMTGSGTQLFDHI 112
G + +DLG T +V + L+ S I D +
Sbjct: 5 TGATIVIDLGKTLSKVSLWDLDGRMLDRQVR--PSIPLEIDGIRRLDA-----PDTGRWL 57
Query: 113 AECLADFMRDNDVAS 127
+ L+ + V +
Sbjct: 58 LDVLSRYADH-PVTT 71
>2qm1_A Glucokinase; alpha-beta structure, putative helix-turn-helix,
structural PSI-2, protein structure initiative; HET:
MSE; 2.02A {Enterococcus faecalis}
Length = 326
Score = 27.6 bits (62), Expect = 1.3
Identities = 15/69 (21%), Positives = 28/69 (40%), Gaps = 5/69 (7%)
Query: 62 KGKFLALDLGGTNFRVLIIYLEENHFKMESKVYSIPQDIMTGSGTQLFDHIAECLADFMR 121
K + +DLGGT + I+ ++ K SI +I+ G + I E + +
Sbjct: 5 DKKIIGIDLGGTTIKFAIL---TTDGVVQQKW-SIETNILED-GKHIVPSIIESIRHRID 59
Query: 122 DNDVASERL 130
++ E
Sbjct: 60 LYNMKKEDF 68
>3r8e_A Hypothetical sugar kinase; ribonuclease H-like motif, structural
genomics, joint center structural genomics, JCSG; HET:
MSE; 1.65A {Cytophaga hutchinsonii}
Length = 321
Score = 27.6 bits (62), Expect = 1.4
Identities = 9/70 (12%), Positives = 27/70 (38%), Gaps = 5/70 (7%)
Query: 58 NGKEKGKFLALDLGGTNFRVLIIYLEENHFKMESKVYSIPQDIMTGSGTQLFDHIAECLA 117
N +G L +D+GGT+ + ++ ++++ G + + +
Sbjct: 14 NLYFQGMILGIDVGGTSVKFGLV---TPEGEIQNA-TRFMTADWVN-GIGFVESMKLEIG 68
Query: 118 DFMRDNDVAS 127
+F++ +
Sbjct: 69 NFLKQYPIVK 78
>3mcp_A Glucokinase; structural genomics, joint center for structural
genomics, J protein structure initiative, PSI-2,
transferase; 3.00A {Parabacteroides distasonis}
Length = 366
Score = 27.7 bits (62), Expect = 1.4
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 61 EKGKFLALDLGGTNFRV 77
+ + LD GGTNF
Sbjct: 7 DNRIVMTLDAGGTNFVF 23
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA,
30S ribosome ASSE GTP-binding, nucleotide-binding; HET:
GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Length = 308
Score = 27.1 bits (61), Expect = 2.0
Identities = 9/49 (18%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 13 DLVLSDEQLREVMSKLLLAINKGLDKNTNKEAVVKCFPTYVQDLPNGKE 61
D + ++ + +++ INK +DK + V+ + P E
Sbjct: 110 DEEIYQNFIKPLNKPVIVVINK-IDKIGPAKNVLPLIDEIHKKHPELTE 157
>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics,
joint center for structural genomics, JCSG, prote
structure initiative; HET: MSE; 1.80A {Salmonella
typhimurium}
Length = 417
Score = 26.5 bits (59), Expect = 3.6
Identities = 12/77 (15%), Positives = 23/77 (29%), Gaps = 19/77 (24%)
Query: 32 INKGLDKNTNKEAVVKCFPTYVQDLPNGKEKGKFLALDLGGTNFRVLIIYLEENHFKME- 90
+ + K+ + P Y+ +G E F++ R I L E FK
Sbjct: 119 AGRR-ADGSTKKVLFPLAPEYIGYADSGLEDDLFVS-------ARPNIELLPEGQFKYHV 170
Query: 91 ----------SKVYSIP 97
+ + +
Sbjct: 171 DFEHLHIGEETGMICVS 187
>2q2r_A Glucokinase 1, putative; ATPase hexose kinase family, transferase;
HET: BGC ADP; 2.10A {Trypanosoma cruzi}
Length = 373
Score = 26.2 bits (57), Expect = 4.1
Identities = 11/95 (11%), Positives = 27/95 (28%), Gaps = 6/95 (6%)
Query: 39 NTNKEAVVKCFPTYVQDLPNGKEKGKFLALDLGGTNFRVLIIYLEENHFKMESKVYSIPQ 98
N + ++ + N D+GGT+ R + E + + + V
Sbjct: 8 NIKELSLHELCEELKTPAWNAPL---TFVGDVGGTSAR-MGFVREGKNDSVHACVTRYSM 63
Query: 99 DIMTGSGTQLFDHIAECLADFMRDNDVASERLPLG 133
T++ + E + + +
Sbjct: 64 K--RKDITEIIEFFNEIIELMPASVMKRVKAGVIN 96
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor,
protein folding, ATP-binding, Ca binding, chaperone,
nucleotide-binding, phosphoprotein; HET: ATP; 2.30A
{Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Length = 675
Score = 26.1 bits (58), Expect = 4.9
Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 16/62 (25%)
Query: 31 AINKGLDKNTNKEAVVKCFPTYVQDLPNGKEKGK-FLALDLGGTNFRVLIIYLEENHFKM 89
++ G+ K DLP G+EK + +D+G +++ I+ ++ K+
Sbjct: 179 GVSYGIFKT---------------DLPEGEEKPRIVAFVDIGHSSYTCSIMAFKKGQLKV 223
Query: 90 ES 91
Sbjct: 224 LG 225
>3vgl_A Glucokinase; ROK family, transferase; HET: BGC ANP; 1.55A
{Streptomyces griseus} PDB: 3vgk_A* 3vgm_A*
Length = 321
Score = 26.0 bits (58), Expect = 5.6
Identities = 11/64 (17%), Positives = 24/64 (37%), Gaps = 7/64 (10%)
Query: 63 GKFLALDLGGTNFRVLIIYLEENHFKMESKVYSIPQDIMTGSGTQLFDHIAECLADFMRD 122
G + +D+GGT ++ + ++ S + + + D I +A
Sbjct: 2 GLTIGVDIGGTKIAAGVV---DEEGRILSTF-KVATPP---TAEGIVDAICAAVAGASEG 54
Query: 123 NDVA 126
+DV
Sbjct: 55 HDVE 58
>3htv_A D-allose kinase, allokinase; NP_418508.1, structural genomics,
joint CEN structural genomics, JCSG, protein structure
initiative; HET: MSE; 1.95A {Escherichia coli k-12}
Length = 310
Score = 25.6 bits (57), Expect = 6.3
Identities = 5/21 (23%), Positives = 10/21 (47%)
Query: 60 KEKGKFLALDLGGTNFRVLII 80
K+ +D+G T+ R +
Sbjct: 4 KQHNVVAGVDMGATHIRFCLR 24
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus}
SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*
Length = 554
Score = 25.6 bits (57), Expect = 6.9
Identities = 17/57 (29%), Positives = 19/57 (33%), Gaps = 19/57 (33%)
Query: 31 AINKGLDKNTNKEAVVKCFPTYVQDLPNGKEKGKFLALDLGGTNFRVLIIYLEENHF 87
AI GLDK E V F DLGG F V I+ + F
Sbjct: 180 AIAYGLDKKVGAERNVLIF-------------------DLGGGTFDVSILTIAAGIF 217
>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics,
seattle structural G center for infectious disease; HET:
ADN NAD; 2.39A {Brucella melitensis biovar abortus}
Length = 464
Score = 25.4 bits (56), Expect = 9.1
Identities = 5/21 (23%), Positives = 11/21 (52%)
Query: 80 IYLEENHFKMESKVYSIPQDI 100
I L +++VY +P+ +
Sbjct: 402 IELFTRTDAYKNEVYVLPKHL 422
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.139 0.400
Gapped
Lambda K H
0.267 0.0790 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,177,580
Number of extensions: 121735
Number of successful extensions: 319
Number of sequences better than 10.0: 1
Number of HSP's gapped: 308
Number of HSP's successfully gapped: 35
Length of query: 142
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 58
Effective length of database: 4,356,429
Effective search space: 252672882
Effective search space used: 252672882
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (23.7 bits)