RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6344
(142 letters)
>d1bdga1 c.55.1.3 (A:13-222) Hexokinase {Blood fluke (Schistosoma
mansoni) [TaxId: 6183]}
Length = 208
Score = 170 bits (432), Expect = 2e-55
Identities = 63/139 (45%), Positives = 90/139 (64%), Gaps = 2/139 (1%)
Query: 6 KIREHCKDLVLSDEQLREVMSKLLLAINKGLDKNTNKEAVVKCFPTYVQDLPNGKEKGKF 65
K+ E K LS E+ ++ ++ GL K+TN+++ +K FP+YV PNG E G F
Sbjct: 9 KVVEILKPFDLSVVDYEEICDRMGESMRLGLQKSTNEKSSIKMFPSYVTKTPNGTETGNF 68
Query: 66 LALDLGGTNFRVLIIYLEENH--FKMESKVYSIPQDIMTGSGTQLFDHIAECLADFMRDN 123
LALDLGGTN+RVL + LE +++ + Y IP + M+GSGT+LF +IAE LADF+ +N
Sbjct: 69 LALDLGGTNYRVLSVTLEGKGKSPRIQERTYCIPAEKMSGSGTELFKYIAETLADFLENN 128
Query: 124 DVASERLPLGFTFSFPLTQ 142
+ ++ LGFTFSFP Q
Sbjct: 129 GMKDKKFDLGFTFSFPCVQ 147
>d1v4sa1 c.55.1.3 (A:14-218) Glucokinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 205
Score = 164 bits (417), Expect = 3e-53
Identities = 60/141 (42%), Positives = 94/141 (66%), Gaps = 5/141 (3%)
Query: 7 IREHCKDLVLSDEQLREVMSKLLLAINKGLDKNTNKEAVVKCFPTYVQDLPNGKEKGKFL 66
+ + + L +E L++VM ++ +++GL T++EA VK PTYV+ P G E G FL
Sbjct: 3 VEQILAEFQLQEEDLKKVMRRMQKEMDRGLRLETHEEASVKMLPTYVRSTPEGSEVGDFL 62
Query: 67 ALDLGGTNFRVLIIYLEENH-----FKMESKVYSIPQDIMTGSGTQLFDHIAECLADFMR 121
+LDLGGTNFRV+++ + E K + ++YSIP+D MTG+ LFD+I+EC++DF+
Sbjct: 63 SLDLGGTNFRVMLVKVGEGEEGQWSVKTKHQMYSIPEDAMTGTAEMLFDYISECISDFLD 122
Query: 122 DNDVASERLPLGFTFSFPLTQ 142
+ + ++LPLGFTFSFP+
Sbjct: 123 KHQMKHKKLPLGFTFSFPVRH 143
>d1czan3 c.55.1.3 (N:466-670) Mammalian type I hexokinase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 205
Score = 163 bits (415), Expect = 7e-53
Identities = 62/140 (44%), Positives = 88/140 (62%), Gaps = 3/140 (2%)
Query: 6 KIREHCKDLVLSDEQLREVMSKLLLAINKGLDKNTNKEAVVKCFPTYVQDLPNGKEKGKF 65
+I E L+ + L EV ++ + GL K T+ AVVK P++V+ P+G E G F
Sbjct: 4 QIEETLAHFHLTKDMLLEVKKRMRAEMELGLRKQTHNNAVVKMLPSFVRRTPDGTENGDF 63
Query: 66 LALDLGGTNFRVLIIYLEENH---FKMESKVYSIPQDIMTGSGTQLFDHIAECLADFMRD 122
LALDLGGTNFRVL++ + +M +K+Y+IP +IM G+G +LFDHI C++DF+
Sbjct: 64 LALDLGGTNFRVLLVKIRSGKKRTVEMHNKIYAIPIEIMQGTGEELFDHIVSCISDFLDY 123
Query: 123 NDVASERLPLGFTFSFPLTQ 142
+ R+PLGFTFSFP Q
Sbjct: 124 MGIKGPRMPLGFTFSFPCQQ 143
>d1czan1 c.55.1.3 (N:16-222) Mammalian type I hexokinase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 207
Score = 162 bits (412), Expect = 2e-52
Identities = 64/140 (45%), Positives = 94/140 (67%), Gaps = 3/140 (2%)
Query: 6 KIREHCKDLVLSDEQLREVMSKLLLAINKGLDKNTNKEAVVKCFPTYVQDLPNGKEKGKF 65
KI ++ + LSDE L ++M++ + GL ++ N A VK PT+V+ +P+G EKG F
Sbjct: 6 KIDKYLYAMRLSDETLIDIMTRFRKEMKNGLSRDFNPTATVKMLPTFVRSIPDGSEKGDF 65
Query: 66 LALDLGGTNFRVLIIYLEENH---FKMESKVYSIPQDIMTGSGTQLFDHIAECLADFMRD 122
+ALDLGG++FR+L + + MES+VY P++I+ GSG+QLFDH+AECL DFM
Sbjct: 66 IALDLGGSSFRILRVQVNHEKNQNVHMESEVYDTPENIVHGSGSQLFDHVAECLGDFMEK 125
Query: 123 NDVASERLPLGFTFSFPLTQ 142
+ ++LP+GFTFSFP Q
Sbjct: 126 RKIKDKKLPVGFTFSFPCQQ 145
>d1ig8a1 c.55.1.3 (A:18-224) Hexokinase {Baker's yeast
(Saccharomyces cerevisiae), pII [TaxId: 4932]}
Length = 207
Score = 142 bits (360), Expect = 1e-44
Identities = 50/141 (35%), Positives = 72/141 (51%), Gaps = 7/141 (4%)
Query: 6 KIREHCKDLVLSDEQLREVMSKLLLAINKGLDKNTNKEAVVKCFPTYVQDLPNGKEKGKF 65
+I K + E L+ V + + KGL K P +V D P GKE G F
Sbjct: 9 QIENFEKIFTVPTETLQAVTKHFISELEKGLSKKGGNI---PMIPGWVMDFPTGKESGDF 65
Query: 66 LALDLGGTNFRVLIIYLEENH-FKMESKVYSIPQDIM-TGSGTQLFDHIAECLADFMRDN 123
LA+DLGGTN RV+++ L + F Y +P + T + +L++ IA+ L F+ +
Sbjct: 66 LAIDLGGTNLRVVLVKLGGDRTFDTTQSKYRLPDAMRTTQNPDELWEFIADSLKAFIDEQ 125
Query: 124 --DVASERLPLGFTFSFPLTQ 142
SE +PLGFTFSFP +Q
Sbjct: 126 FPQGISEPIPLGFTFSFPASQ 146
>d1woqa1 c.55.1.10 (A:11-139) Inorganic
polyphosphate/ATP-glucomannokinase PPGMK {Arthrobacter
sp. KM [TaxId: 184230]}
Length = 129
Score = 32.9 bits (74), Expect = 0.005
Identities = 15/77 (19%), Positives = 32/77 (41%), Gaps = 3/77 (3%)
Query: 66 LALDLGGTNFRVLIIYLEENHFKMESKVYSIPQDIMTGSGTQLFDHIAECLADFMRDNDV 125
+ +D+GGT + I+ L++ E PQ + + + +A +A+ +
Sbjct: 5 IGIDIGGTGIKGGIVDLKKGKLLGERFRVPTPQPA---TPESVAEAVALVVAELSARPEA 61
Query: 126 ASERLPLGFTFSFPLTQ 142
+ P+G TF +
Sbjct: 62 PAAGSPVGVTFPGIIQH 78
>d1z6ra2 c.55.1.10 (A:82-210) Mlc protein {Escherichia coli [TaxId:
562]}
Length = 129
Score = 31.9 bits (71), Expect = 0.012
Identities = 12/69 (17%), Positives = 20/69 (28%), Gaps = 6/69 (8%)
Query: 61 EKGKFLALDLGGTNFRVLIIYLEENHFKMESKVYSIPQDIMTGSGTQLFDHIAECLADFM 120
E +L+L + + + L ES+ L D I + F
Sbjct: 2 EAWHYLSLRISRGEIFLALRDLSSKLVVEESQEL------ALKDDLPLLDRIISHIDQFF 55
Query: 121 RDNDVASER 129
+ ER
Sbjct: 56 IRHQKKLER 64
>d1sz2a1 c.55.1.7 (A:3-321) Glucokinase Glk {Escherichia coli
[TaxId: 562]}
Length = 319
Score = 31.7 bits (70), Expect = 0.020
Identities = 11/68 (16%), Positives = 26/68 (38%), Gaps = 11/68 (16%)
Query: 66 LALDLGGTNFRVLIIYLEENHFKMESKVYSIPQDIMTGSGTQLFDHIAECLADFMRDNDV 125
L D+GGTN R+ + + ++K YS + + + ++ ++ V
Sbjct: 4 LVGDVGGTNARLALCDIASGEIS-QAKTYS----------GLDYPSLEAVIRVYLEEHKV 52
Query: 126 ASERLPLG 133
+ +
Sbjct: 53 EVKDGCIA 60
>d2hoea3 c.55.1.10 (A:72-199) N-acetylglucosamine kinase {Thermotoga
maritima [TaxId: 2336]}
Length = 128
Score = 29.0 bits (64), Expect = 0.11
Identities = 8/81 (9%), Positives = 20/81 (24%), Gaps = 6/81 (7%)
Query: 61 EKGKFLALDLGGTNFRVLIIYLEENHFKMESKVYSIPQDIMTGSGTQLFDHIAECLADFM 120
L +++ +I N E+ D + + + +
Sbjct: 2 NCAYVLGIEVTRDEIAACLIDASMNILAHEAHPLPSQSD-----REETLNVMYRIIDRAK 56
Query: 121 RDNDVASERL-PLGFTFSFPL 140
+ +L L P+
Sbjct: 57 DMMEKLGSKLSALTVAAPGPI 77
>d1xc3a1 c.55.1.10 (A:1-118) Putative fructokinase YhdR {Bacillus
subtilis [TaxId: 1423]}
Length = 118
Score = 28.6 bits (63), Expect = 0.14
Identities = 5/37 (13%), Positives = 12/37 (32%)
Query: 65 FLALDLGGTNFRVLIIYLEENHFKMESKVYSIPQDIM 101
++ GGT F + + +P + +
Sbjct: 2 LGGIEAGGTKFVCAVGREDGTIIDRIEFPTKMPDETI 38
>d2ap1a2 c.55.1.10 (A:1-117) Putative regulator protein YcfX
{Salmonella typhimurium [TaxId: 90371]}
Length = 117
Score = 27.9 bits (61), Expect = 0.23
Identities = 7/59 (11%), Positives = 17/59 (28%), Gaps = 6/59 (10%)
Query: 65 FLALDLGGTNFRVLIIYLEENHFKMESKVYSIPQDIMTGSGTQLFDHIAECLADFMRDN 123
+ D+GGT + + + S + D + E + + +
Sbjct: 2 YYGFDIGGTKIALGVFDSTRRL------QWEKRVPTPHTSYSAFLDAVCELVEEADQRF 54
>d1zc6a1 c.55.1.5 (A:8-121) Probable N-acetylglucosamine kinase
CV2896 {Chromobacterium violaceum [TaxId: 536]}
Length = 114
Score = 28.1 bits (62), Expect = 0.23
Identities = 10/70 (14%), Positives = 22/70 (31%), Gaps = 1/70 (1%)
Query: 65 FLALDLGGTNFRVLIIYLEENHFKMESKVYSIPQDIMTGSGTQLFDHIAECLADF-MRDN 123
+ +D GGT R+ + + M S + S + + +
Sbjct: 6 LIGVDGGGTGTRIRLHASDGTPLAMAEGGASALSQGIAKSWQAVLSTLEAAFQQAGLPAA 65
Query: 124 DVASERLPLG 133
++ + LG
Sbjct: 66 PASACAIGLG 75
>d1q18a1 c.55.1.7 (A:2-111) Glucokinase Glk {Escherichia coli
[TaxId: 562]}
Length = 110
Score = 27.4 bits (60), Expect = 0.30
Identities = 12/61 (19%), Positives = 19/61 (31%), Gaps = 7/61 (11%)
Query: 66 LALDLGGTNFRVLIIYLEENHFKMESKVYSIPQDIMTGSGTQLFDHIAECLADFMRDNDV 125
L D+GGTN R+ + + S S + L I L + +
Sbjct: 5 LVGDVGGTNARLAL-------CDIASGEISQAKTYSGLDYPSLEAVIRVYLEEHKVEVKD 57
Query: 126 A 126
Sbjct: 58 G 58
>d1z05a3 c.55.1.10 (A:81-208) Transcriptional regulator VC2007
{Vibrio cholerae [TaxId: 666]}
Length = 128
Score = 27.5 bits (60), Expect = 0.37
Identities = 9/65 (13%), Positives = 20/65 (30%), Gaps = 6/65 (9%)
Query: 65 FLALDLGGTNFRVLIIYLEENHFKMESKVYSIPQDIMTGSGTQLFDHIAECLADFMRDND 124
FL++ LG + + L + DI + + + +F +
Sbjct: 6 FLSMRLGRGYLTIALHELGGEV------LIDTKIDIHEIDQDDVLARLLFEIEEFFQTYA 59
Query: 125 VASER 129
+R
Sbjct: 60 AQLDR 64
>d2aa4a1 c.55.1.10 (A:1-119) N-acetylmannosamine kinase NanK
{Escherichia coli [TaxId: 562]}
Length = 119
Score = 26.7 bits (58), Expect = 0.60
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 64 KFLALDLGGTNFRVLIIYLEENHFKME 90
LA+D+GGT +I +
Sbjct: 2 TTLAIDIGGTKLAAALIGADGQIRDRR 28
>d2gupa1 c.55.1.10 (A:1-114) Hypothetical protein SP2142
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 114
Score = 26.1 bits (57), Expect = 0.89
Identities = 6/48 (12%), Positives = 13/48 (27%)
Query: 64 KFLALDLGGTNFRVLIIYLEENHFKMESKVYSIPQDIMTGSGTQLFDH 111
+D+GGT + + + S + + Q
Sbjct: 2 TIATIDIGGTGIKFASLTPDGKILDKTSISTPENLEDLLAWLDQRLSE 49
>d3en8a1 d.17.4.20 (A:1-127) Uncharacterized protein BxeB2092
{Burkholderia xenovorans [TaxId: 36873]}
Length = 127
Score = 25.2 bits (54), Expect = 2.4
Identities = 9/47 (19%), Positives = 19/47 (40%), Gaps = 6/47 (12%)
Query: 16 LSDEQLREVMSKLLLAINKGLDKNTNKEAVVKCF-PTYVQDLPNGKE 61
+ +E++RE ++ A G + +A + + D P E
Sbjct: 1 MREEKIREALNAHWQASAAG-----DFDAEHDIYDDDAICDYPQSGE 42
>d2p3ra1 c.55.1.4 (A:2-253) Glycerol kinase {Escherichia coli
[TaxId: 562]}
Length = 252
Score = 25.1 bits (54), Expect = 3.1
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 61 EKGKFLALDLGGTNFRVLII 80
EK +ALD G T+ R +++
Sbjct: 1 EKKYIVALDQGTTSSRAVVM 20
>d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase
fragment {Cow (Bos taurus) [TaxId: 9913]}
Length = 193
Score = 24.9 bits (54), Expect = 3.3
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 9/69 (13%)
Query: 59 GKEKGKFLALDLGGTNFRVLIIYLEENHFKMESKVYSIPQDIMTGSGTQLFD--HIAECL 116
G E+ L DLGG F V I+ +E+ F+++S T G + FD + +
Sbjct: 2 GAER-NVLIFDLGGGTFDVSILTIEDGIFEVKSTAGD------THLGGEDFDNRMVNHFI 54
Query: 117 ADFMRDNDV 125
A+F R +
Sbjct: 55 AEFKRKHKK 63
>d1u6za2 c.55.1.8 (A:12-135) Exopolyphosphatase Ppx {Escherichia
coli [TaxId: 562]}
Length = 124
Score = 24.5 bits (53), Expect = 3.4
Identities = 7/25 (28%), Positives = 15/25 (60%)
Query: 64 KFLALDLGGTNFRVLIIYLEENHFK 88
+F A+DLG +F ++I + + +
Sbjct: 1 EFAAVDLGSNSFHMVIARVVDGAMQ 25
>d1hy5a_ a.24.11.1 (A:) YopE {Yersinia pestis [TaxId: 632]}
Length = 120
Score = 24.5 bits (53), Expect = 3.5
Identities = 3/22 (13%), Positives = 8/22 (36%)
Query: 13 DLVLSDEQLREVMSKLLLAINK 34
V S L + +++ +
Sbjct: 91 AYVASGVDLTQAANEIKGLAQQ 112
>d1g6sa_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP)
synthase {Escherichia coli [TaxId: 562]}
Length = 427
Score = 24.9 bits (53), Expect = 4.0
Identities = 9/36 (25%), Positives = 15/36 (41%)
Query: 21 LREVMSKLLLAINKGLDKNTNKEAVVKCFPTYVQDL 56
R M L+A++ + + K FP Y + L
Sbjct: 385 HRMAMCFSLVALSDTPVTILDPKCTAKTFPDYFEQL 420
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.139 0.400
Gapped
Lambda K H
0.267 0.0461 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 524,737
Number of extensions: 22754
Number of successful extensions: 82
Number of sequences better than 10.0: 1
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 25
Length of query: 142
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 65
Effective length of database: 1,350,386
Effective search space: 87775090
Effective search space used: 87775090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (22.9 bits)