BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6348
(333 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2G76|A Chain A, Crystal Structure Of Human 3-Phosphoglycerate
Dehydrogenase
pdb|2G76|B Chain B, Crystal Structure Of Human 3-Phosphoglycerate
Dehydrogenase
Length = 335
Score = 338 bits (866), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 164/261 (62%), Positives = 198/261 (75%), Gaps = 4/261 (1%)
Query: 3 DGLVVRSDTKVTAEVLQASN-LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACE 61
+GL+VRS TKVTA+V+ A+ LQVVGRAGTGVDN+DL AATRKG+LV+N P GN +SA E
Sbjct: 69 EGLIVRSATKVTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAE 128
Query: 62 LTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFG 121
LTC +I L+R +PQ S+K+GKW+RK + GTEL GKTL +LGLGRIGREVA RMQ+FG
Sbjct: 129 LTCGMIMCLARQIPQATASMKDGKWERKKFMGTELNGKTLGILGLGRIGREVATRMQSFG 188
Query: 122 MKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKG 181
MK IG+DP++S E +A + L LE+IWPL D+ITVHTPL+P T L+N +CKKG
Sbjct: 189 MKTIGYDPIISPEVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKG 248
Query: 182 VRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLG 241
VRVVN ARGGIVDE ALL +L+ G C GAALDVF EEPP+ L+ H VI PHLG
Sbjct: 249 VRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEPPRDRA---LVDHENVISCPHLG 305
Query: 242 ASTKEAQIRVAVEIAEQFIAL 262
ASTKEAQ R EIA QF+ +
Sbjct: 306 ASTKEAQSRCGEEIAVQFVDM 326
>pdb|1YGY|A Chain A, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase
From Mycobacterium Tuberculosis
pdb|1YGY|B Chain B, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase
From Mycobacterium Tuberculosis
pdb|3DC2|A Chain A, Crystal Structure Of Serine Bound D-3-Phosphoglycerate
Dehydrogenase From Mycobacterium Tuberculosis
pdb|3DC2|B Chain B, Crystal Structure Of Serine Bound D-3-Phosphoglycerate
Dehydrogenase From Mycobacterium Tuberculosis
Length = 529
Score = 246 bits (629), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 144/301 (47%), Positives = 186/301 (61%), Gaps = 14/301 (4%)
Query: 3 DGLVVRSDTKVTAEVLQAS-NLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACE 61
D L+VRS T V AEVL A+ L++V RAG G+DN+D+ AAT +GVLV+NAP N SA E
Sbjct: 46 DALLVRSATTVDAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAE 105
Query: 62 LTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFG 121
+L+ A SR +P SL+E W R ++GTE++GKT+ V+GLGRIG+ VA R+ AFG
Sbjct: 106 HALALLLAASRQIPAADASLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFG 165
Query: 122 MKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKG 181
V+ +DP VS AA+L I L L+D+ AD+I+VH P P+T LI+ E L K K G
Sbjct: 166 AYVVAYDPYVSPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPG 225
Query: 182 VRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLG 241
V +VN ARGG+VDE AL D++ GH A LDVF EP FEL +V+VTPHLG
Sbjct: 226 VIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFEL---AQVVVTPHLG 282
Query: 242 ASTKEAQIRVAVEIAEQF-IALANTN-PQYTSIQGVLNAPALAASRNPENTSWISLARSL 299
AST EAQ R ++AE +ALA P ++ G N E W+ L R L
Sbjct: 283 ASTAEAQDRAGTDVAESVRLALAGEFVPDAVNVGG--------GVVNEEVAPWLDLVRKL 334
Query: 300 G 300
G
Sbjct: 335 G 335
>pdb|3DDN|A Chain A, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound
D-3- Phosphoglycerate Dehydrogenase In Mycobacterium
Tuberculosis
pdb|3DDN|B Chain B, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound
D-3- Phosphoglycerate Dehydrogenase In Mycobacterium
Tuberculosis
Length = 528
Score = 246 bits (629), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 144/301 (47%), Positives = 186/301 (61%), Gaps = 14/301 (4%)
Query: 3 DGLVVRSDTKVTAEVLQAS-NLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACE 61
D L+VRS T V AEVL A+ L++V RAG G+DN+D+ AAT +GVLV+NAP N SA E
Sbjct: 45 DALLVRSATTVDAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAE 104
Query: 62 LTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFG 121
+L+ A SR +P SL+E W R ++GTE++GKT+ V+GLGRIG+ VA R+ AFG
Sbjct: 105 HALALLLAASRQIPAADASLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFG 164
Query: 122 MKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKG 181
V+ +DP VS AA+L I L L+D+ AD+I+VH P P+T LI+ E L K K G
Sbjct: 165 AYVVAYDPYVSPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPG 224
Query: 182 VRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLG 241
V +VN ARGG+VDE AL D++ GH A LDVF EP FEL +V+VTPHLG
Sbjct: 225 VIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFEL---AQVVVTPHLG 281
Query: 242 ASTKEAQIRVAVEIAEQF-IALANTN-PQYTSIQGVLNAPALAASRNPENTSWISLARSL 299
AST EAQ R ++AE +ALA P ++ G N E W+ L R L
Sbjct: 282 ASTAEAQDRAGTDVAESVRLALAGEFVPDAVNVGG--------GVVNEEVAPWLDLVRKL 333
Query: 300 G 300
G
Sbjct: 334 G 334
>pdb|1WWK|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From
Pyrococcus Horikoshii Ot3
pdb|1WWK|B Chain B, Crystal Structure Of Phosphoglycerate Dehydrogenase From
Pyrococcus Horikoshii Ot3
Length = 307
Score = 188 bits (477), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 112/262 (42%), Positives = 163/262 (62%), Gaps = 5/262 (1%)
Query: 3 DGLVVRSDTKVTAEVLQ-ASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACE 61
+ ++VRS KVT V++ A L+V+ RAG G+DNID+ AA KG+ V+NAP + S E
Sbjct: 46 EAIIVRSKPKVTRRVIESAPKLKVIARAGVGLDNIDVEAAKEKGIEVVNAPAASSRSVAE 105
Query: 62 LTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFG 121
L L+ +++R + + ++EG W +K G EL GKT+ ++G GRIG +VA A G
Sbjct: 106 LAVGLMFSVARKIAFADRKMREGVWAKKEAMGIELEGKTIGIIGFGRIGYQVAKIANALG 165
Query: 122 MKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKG 181
M ++ +DP + E A ++N + LE + +D +T+H PL+ T +LIN E LK KK
Sbjct: 166 MNILLYDPYPNEERAKEVNGKFVDLETLLKESDVVTIHVPLVESTYHLINEERLKLMKKT 225
Query: 182 VRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEP-PKSEQTFELIKHPKVIVTPHL 240
++N +RG +VD NAL+ +LK G GA LDVF EEP PK L K V++TPH+
Sbjct: 226 AILINTSRGPVVDTNALVKALKEGWIAGAGLDVFEEEPLPKDHP---LTKFDNVVLTPHI 282
Query: 241 GASTKEAQIRVAVEIAEQFIAL 262
GAST EAQ R VE+AE+ + +
Sbjct: 283 GASTVEAQERAGVEVAEKVVKI 304
>pdb|2EKL|A Chain A, Structure Of St1218 Protein From Sulfolobus Tokodaii
Length = 313
Score = 184 bits (467), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 105/252 (41%), Positives = 149/252 (59%), Gaps = 3/252 (1%)
Query: 2 YDGLVVRSDTKVTAEVLQ-ASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISAC 60
YD +VVRS TKVT +V++ L+++ RAG G+DNID A ++ + V+ APG + SA
Sbjct: 47 YDIIVVRSRTKVTKDVIEKGKKLKIIARAGIGLDNIDTEEAEKRNIKVVYAPGASTDSAV 106
Query: 61 ELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAF 120
ELT L+ A +R + K G + K G EL GKT+ ++G GRIG +V + A
Sbjct: 107 ELTIGLMIAAARKMYTSMALAKSGIF--KKIEGLELAGKTIGIVGFGRIGTKVGIIANAM 164
Query: 121 GMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKK 180
GMKV+ +D + E A K+N ++ LE++ +D I++H + K +I+ + K
Sbjct: 165 GMKVLAYDILDIREKAEKINAKAVSLEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKD 224
Query: 181 GVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHL 240
V +VN +R V+ ALLD +K G A DVF EPPK E EL+KH +VIVT H+
Sbjct: 225 NVIIVNTSRAVAVNGKALLDYIKKGKVYAYATDVFWNEPPKEEWELELLKHERVIVTTHI 284
Query: 241 GASTKEAQIRVA 252
GA TKEAQ RVA
Sbjct: 285 GAQTKEAQKRVA 296
>pdb|2P9C|A Chain A, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9C|B Chain B, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|A Chain A, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|B Chain B, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|C Chain C, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|D Chain D, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2PA3|A Chain A, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
Length = 410
Score = 150 bits (379), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 96/301 (31%), Positives = 154/301 (51%), Gaps = 21/301 (6%)
Query: 7 VRSDTKVTAEVLQASN-LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCS 65
+RS T +T +V+ A+ L +G G + +DL AA ++G+ V NAP N S EL
Sbjct: 59 LRSRTHLTEDVINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIG 118
Query: 66 LISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVI 125
+ L R VP+ G W++ E GK L ++G G IG ++ + ++ GM V
Sbjct: 119 ELLLLLRGVPEANAKAHRGVWNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVY 178
Query: 126 GFDPMVSVEDAAKLNIAS--LGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVR 183
+D +E+ L A+ L D+ ++D +++H P P TKN++ A+ + K G
Sbjct: 179 FYD----IENKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSL 234
Query: 184 VVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFE--LIKHPKVIVTPHLG 241
++N +RG +VD AL D+L H GAA+DVF EP + F L + V++TPH+G
Sbjct: 235 LINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIG 294
Query: 242 ASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNAPALAASRNPENTSWISLARSLGK 301
ST+EAQ + +E+A + I ++ N L+A PE + + + R L
Sbjct: 295 GSTQEAQENIGLEVAGKLIKYSD------------NGSTLSAVNFPEVSLPLHVGRRLMH 342
Query: 302 I 302
I
Sbjct: 343 I 343
>pdb|2P9G|A Chain A, Crystal Structure Of Serine Bound G336v,G337v Double
Mutant Of E.Coli Phosphoglycerate Dehydrogenase
pdb|2P9G|B Chain B, Crystal Structure Of Serine Bound G336v,G337v Double
Mutant Of E.Coli Phosphoglycerate Dehydrogenase
Length = 410
Score = 150 bits (379), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 96/301 (31%), Positives = 154/301 (51%), Gaps = 21/301 (6%)
Query: 7 VRSDTKVTAEVLQASN-LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCS 65
+RS T +T +V+ A+ L +G G + +DL AA ++G+ V NAP N S EL
Sbjct: 59 LRSRTHLTEDVINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIG 118
Query: 66 LISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVI 125
+ L R VP+ G W++ E GK L ++G G IG ++ + ++ GM V
Sbjct: 119 ELLLLLRGVPEANAKAHRGVWNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVY 178
Query: 126 GFDPMVSVEDAAKLNIAS--LGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVR 183
+D +E+ L A+ L D+ ++D +++H P P TKN++ A+ + K G
Sbjct: 179 FYD----IENKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSL 234
Query: 184 VVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFE--LIKHPKVIVTPHLG 241
++N +RG +VD AL D+L H GAA+DVF EP + F L + V++TPH+G
Sbjct: 235 LINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIG 294
Query: 242 ASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNAPALAASRNPENTSWISLARSLGK 301
ST+EAQ + +E+A + I ++ N L+A PE + + + R L
Sbjct: 295 GSTQEAQENIGLEVAGKLIKYSD------------NGSTLSAVNFPEVSLPLHVVRRLMH 342
Query: 302 I 302
I
Sbjct: 343 I 343
>pdb|3K5P|A Chain A, Crystal Structure Of Amino Acid-Binding Act: D-Isomer
Specific 2- Hydroxyacid Dehydrogenase Catalytic Domain
From Brucella Melitensis
Length = 416
Score = 148 bits (374), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 97/292 (33%), Positives = 148/292 (50%), Gaps = 9/292 (3%)
Query: 7 VRSDTKVTAEVLQASN-LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCS 65
+RS T++T E+ A+N L VG G + ++L AA ++G+ V NAP N S EL
Sbjct: 64 IRSRTQLTEEIFAAANRLIAVGCFSVGTNQVELKAARKRGIPVFNAPFSNTRSVAELVIG 123
Query: 66 LISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVI 125
I L R + S G W++ E+ GKTL ++G G IG +V ++ GM V
Sbjct: 124 EIIMLMRRIFPRSVSAHAGGWEKTAIGSREVRGKTLGIVGYGNIGSQVGNLAESLGMTVR 183
Query: 126 GFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVV 185
+D ++ AS L+++ +D +++H P T LI L+K KKG ++
Sbjct: 184 YYDTSDKLQYGNVKPAAS--LDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLI 241
Query: 186 NVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFE--LIKHPKVIVTPHLGAS 243
N ARG VD AL L+ GH GAA+DVF EP + + F L VI+TPH+G S
Sbjct: 242 NNARGSDVDLEALAKVLQEGHLAGAAIDVFPVEPASNGERFSTPLQGLENVILTPHIGGS 301
Query: 244 TKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNAPALAASRNPENTSWISL 295
T+EAQ R+ E+ + + ++ S G +N P + P T ++ +
Sbjct: 302 TEEAQERIGTEVTRKLVEYSDVG----STVGAVNFPQVQLPPRPTGTRFMHV 349
>pdb|1PSD|A Chain A, The Allosteric Ligand Site In The Vmax-Type Cooperative
Enzyme Phosphoglycerate Dehydrogenase
pdb|1PSD|B Chain B, The Allosteric Ligand Site In The Vmax-Type Cooperative
Enzyme Phosphoglycerate Dehydrogenase
Length = 409
Score = 146 bits (369), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 88/271 (32%), Positives = 145/271 (53%), Gaps = 9/271 (3%)
Query: 7 VRSDTKVTAEVLQASN-LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCS 65
+RS T +T +V+ A+ L +G G + +DL AA ++G+ V NAP N S EL
Sbjct: 58 LRSRTHLTEDVINAAEKLVAIGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIG 117
Query: 66 LISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVI 125
+ L R VP+ G W++ E GK L ++G G IG ++ + ++ GM V
Sbjct: 118 ELLLLLRGVPEANAKAHRGVWNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVY 177
Query: 126 GFDPMVSVEDAAKLNIAS--LGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVR 183
+D +E+ L A+ L D+ ++D +++H P P TKN++ A+ + K G
Sbjct: 178 FYD----IENKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSL 233
Query: 184 VVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFE--LIKHPKVIVTPHLG 241
++N +RG +VD AL D+L H GAA+DVF EP + F L + V++TPH+G
Sbjct: 234 LINASRGTVVDIPALCDALASKHLAGAAIDVFPTEPATNSDPFTSPLCEFDNVLLTPHIG 293
Query: 242 ASTKEAQIRVAVEIAEQFIALANTNPQYTSI 272
ST+EAQ + +E+A + I ++ +++
Sbjct: 294 GSTQEAQENIGLEVAGKLIKYSDNGSTLSAV 324
>pdb|2D0I|A Chain A, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|B Chain B, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|C Chain C, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|D Chain D, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
Length = 333
Score = 143 bits (360), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 86/267 (32%), Positives = 144/267 (53%), Gaps = 10/267 (3%)
Query: 1 KYDGLVVRSDTKVTAEVLQ-ASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISA 59
++DG++V TK+T EVL+ A L+V+ G DNIDL AT++G+ V G +
Sbjct: 42 RFDGIIVSPTTKITREVLENAERLKVISCHSAGYDNIDLEEATKRGIYVTKVSGLLSEAV 101
Query: 60 CELTCSLISALSRNVPQGCQSLKEGKWDR--KLYTGTE----LYGKTLAVLGLGRIGREV 113
E T LI L R + + ++ G+W+ K++TG + LYGK + +LG+G IG+ +
Sbjct: 102 AEFTVGLIINLMRKIHYADKFIRRGEWESHAKIWTGFKRIESLYGKKVGILGMGAIGKAI 161
Query: 114 ALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAE 173
A R+ FG+K+ + V +L + ++++ +D + + PL T ++IN E
Sbjct: 162 ARRLIPFGVKLYYWSRHRKVNVEKELKARYMDIDELLEKSDIVILALPLTRDTYHIINEE 221
Query: 174 VLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPK 233
+KK +G +VN+ RG +VDE A+ +++K G G A DVF +EP + + F+ +
Sbjct: 222 RVKKL-EGKYLVNIGRGALVDEKAVTEAIKQGKLKGYATDVFEKEPVREHELFKY--EWE 278
Query: 234 VIVTPHLGASTKEAQIRVAVEIAEQFI 260
++TPH EAQ V E +
Sbjct: 279 TVLTPHYAGLALEAQEDVGFRAVENLL 305
>pdb|2DBR|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|B Chain B, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|C Chain C, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|D Chain D, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|E Chain E, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|F Chain F, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBZ|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P61)
pdb|2DBZ|B Chain B, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P61)
Length = 334
Score = 140 bits (353), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 95/268 (35%), Positives = 156/268 (58%), Gaps = 11/268 (4%)
Query: 3 DGLVVRSDTKVTAEVLQ-ASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACE 61
D LV ++ EV + A L++V G DNID+ AT++G+ V N P + +
Sbjct: 47 DALVTMLSERIDKEVFENAPKLRIVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATAD 106
Query: 62 LTCSLISALSRNVPQGCQSLKEGKWDR-------KLYTGTELYGKTLAVLGLGRIGREVA 114
L +L+ A +R+V +G + ++ G+W + K + G ++YGKT+ ++GLGRIG+ +A
Sbjct: 107 LAFALLLATARHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIA 166
Query: 115 LRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEV 174
R + F M+++ + E +LN LED+ +D++ + PL +T +LIN E
Sbjct: 167 KRAKGFNMRILYYSRTRKEEVERELNAEFKPLEDLLRESDFVVLAVPLTRETYHLINEER 226
Query: 175 LKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKV 234
LK KK ++N+ARG +VD NAL+ +LK G GA LDVF EEP +E+ F+L V
Sbjct: 227 LKLMKKTAILINIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYYNEELFKL---DNV 283
Query: 235 IVTPHLGASTKEAQIRVAVEIAEQFIAL 262
++TPH+G+++ A+ +A +A+ IA
Sbjct: 284 VLTPHIGSASFGAREGMAELVAKNLIAF 311
>pdb|1YBA|A Chain A, The Active Form Of Phosphoglycerate Dehydrogenase
pdb|1YBA|B Chain B, The Active Form Of Phosphoglycerate Dehydrogenase
pdb|1YBA|C Chain C, The Active Form Of Phosphoglycerate Dehydrogenase
pdb|1YBA|D Chain D, The Active Form Of Phosphoglycerate Dehydrogenase
Length = 410
Score = 139 bits (351), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 87/271 (32%), Positives = 141/271 (52%), Gaps = 9/271 (3%)
Query: 7 VRSDTKVTAEVLQASN-LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCS 65
+RS T +T +V+ A+ L +G G + +DL AA ++G+ V NAP N S EL
Sbjct: 59 LRSRTHLTEDVINAAEKLVAIGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIG 118
Query: 66 LISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVI 125
+ L R VP+ G W++ E GK L ++G G IG ++ + ++ G V
Sbjct: 119 ELLLLLRGVPEANAKAHRGVWNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGXYVY 178
Query: 126 GFDPMVSVEDAAKLNIAS--LGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVR 183
+D +E+ L A+ L D+ +D +++H P P TKN A+ + K G
Sbjct: 179 FYD----IENKLPLGNATQVQHLSDLLNXSDVVSLHVPENPSTKNXXGAKEISLXKPGSL 234
Query: 184 VVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFE--LIKHPKVIVTPHLG 241
++N +RG +VD AL D+L H GAA+DVF EP + F L + V++TPH+G
Sbjct: 235 LINASRGTVVDIPALCDALASKHLAGAAIDVFPTEPATNSDPFTSPLCEFDNVLLTPHIG 294
Query: 242 ASTKEAQIRVAVEIAEQFIALANTNPQYTSI 272
ST+EAQ + +E+A + I ++ +++
Sbjct: 295 GSTQEAQENIGLEVAGKLIKYSDNGSTLSAV 325
>pdb|1SC6|A Chain A, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
pdb|1SC6|B Chain B, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
pdb|1SC6|C Chain C, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
pdb|1SC6|D Chain D, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
Length = 404
Score = 137 bits (345), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 86/271 (31%), Positives = 140/271 (51%), Gaps = 9/271 (3%)
Query: 7 VRSDTKVTAEVLQASN-LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCS 65
+RS T +T +V+ A+ L +G G + +DL AA ++G+ V NAP N S EL
Sbjct: 53 LRSRTHLTEDVINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIG 112
Query: 66 LISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVI 125
+ L R VP+ G ++ E GK L ++G G IG ++ + ++ G V
Sbjct: 113 ELLLLLRGVPEANAKAHRGVGNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGXYVY 172
Query: 126 GFDPMVSVEDAAKLNIASL--GLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVR 183
+D +E+ L A+ L D+ +D +++H P P TKN A+ + K G
Sbjct: 173 FYD----IENKLPLGNATQVQHLSDLLNXSDVVSLHVPENPSTKNXXGAKEISLXKPGSL 228
Query: 184 VVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFE--LIKHPKVIVTPHLG 241
++N +RG +VD AL D+L H GAA+DVF EP + F L + V++TPH+G
Sbjct: 229 LINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIG 288
Query: 242 ASTKEAQIRVAVEIAEQFIALANTNPQYTSI 272
ST+EAQ + +E+A + I ++ +++
Sbjct: 289 GSTQEAQENIGLEVAGKLIKYSDNGSTLSAV 319
>pdb|1HKU|A Chain A, CtbpBARS: A DUAL-Function Protein Involved In
Transcription Corepression And Golgi Membrane Fission
Length = 358
Score = 137 bits (344), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 97/271 (35%), Positives = 146/271 (53%), Gaps = 12/271 (4%)
Query: 23 LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLK 82
L+++ R G+G DNID+ +A G+ V N P + + T I L R Q+L+
Sbjct: 89 LRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRTTWLHQALR 148
Query: 83 EG------KWDRKLYTGT-ELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVS--V 133
EG + R++ +G + G+TL ++GLGR+G+ VALR +AFG V+ +DP +S +
Sbjct: 149 EGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGI 208
Query: 134 EDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIV 193
E A L S L+D+ +D +T+H L +LIN +K+ ++G +VN ARGG+V
Sbjct: 209 ERALGLQRVST-LQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLV 267
Query: 194 DENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIRVAV 253
DE AL +LK G GAALDV EP Q L P +I TPH +++A I +
Sbjct: 268 DEKALAQALKEGRIRGAALDVHESEPFSFSQG-PLKDAPNLICTPHAAWYSEQASIEMRE 326
Query: 254 EIAEQFIALANTNPQYTSIQGVLNAPALAAS 284
E A + I A T S++ +N L A+
Sbjct: 327 EAARE-IRRAITGRIPDSLKNCVNKDHLTAA 356
>pdb|1HL3|A Chain A, CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK
PEPTIDE
pdb|2HU2|A Chain A, CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND RRTGAPPAL
Peptide
Length = 358
Score = 136 bits (343), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 97/271 (35%), Positives = 146/271 (53%), Gaps = 12/271 (4%)
Query: 23 LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLK 82
L+++ R G+G DNID+ +A G+ V N P + + T I L R Q+L+
Sbjct: 89 LRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRTTWLHQALR 148
Query: 83 EG------KWDRKLYTGT-ELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVS--V 133
EG + R++ +G + G+TL ++GLGR+G+ VALR +AFG V+ +DP +S +
Sbjct: 149 EGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGI 208
Query: 134 EDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIV 193
E A L S L+D+ +D +T+H L +LIN +K+ ++G +VN ARGG+V
Sbjct: 209 ERALGLQRVST-LQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLV 267
Query: 194 DENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIRVAV 253
DE AL +LK G GAALDV EP Q L P +I TPH +++A I +
Sbjct: 268 DEKALAQALKEGRIRGAALDVHESEPFSFSQG-PLKDAPNLICTPHAAWYSEQASIEMRE 326
Query: 254 EIAEQFIALANTNPQYTSIQGVLNAPALAAS 284
E A + I A T S++ +N L A+
Sbjct: 327 EAARE-IRRAITGRIPDSLKNCVNKDHLTAA 356
>pdb|1MX3|A Chain A, Crystal Structure Of Ctbp Dehydrogenase Core Holo Form
Length = 347
Score = 136 bits (343), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 91/245 (37%), Positives = 135/245 (55%), Gaps = 11/245 (4%)
Query: 23 LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLK 82
L+++ R G+G DNID+ +A G+ V N P + + T I L R Q+L+
Sbjct: 86 LRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRATWLHQALR 145
Query: 83 EG------KWDRKLYTGT-ELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVS--V 133
EG + R++ +G + G+TL ++GLGR+G+ VALR +AFG V+ +DP +S V
Sbjct: 146 EGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGV 205
Query: 134 EDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIV 193
E A L S L+D+ +D +T+H L +LIN +K+ ++G +VN ARGG+V
Sbjct: 206 ERALGLQRVST-LQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLV 264
Query: 194 DENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIRVAV 253
DE AL +LK G GAALDV EP Q L P +I TPH +++A I +
Sbjct: 265 DEKALAQALKEGRIRGAALDVHESEPFSFSQG-PLKDAPNLICTPHAAWYSEQASIEMRE 323
Query: 254 EIAEQ 258
E A +
Sbjct: 324 EAARE 328
>pdb|2DBQ|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (I41)
Length = 334
Score = 136 bits (343), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 94/268 (35%), Positives = 154/268 (57%), Gaps = 11/268 (4%)
Query: 3 DGLVVRSDTKVTAEVLQ-ASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACE 61
D LV ++ EV + A L++V G DNID+ AT++G+ V N P + +
Sbjct: 47 DALVTXLSERIDKEVFENAPKLRIVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATAD 106
Query: 62 LTCSLISALSRNVPQGCQSLKEGKWDR-------KLYTGTELYGKTLAVLGLGRIGREVA 114
L +L+ A +R+V +G + ++ G+W + K + G ++YGKT+ ++GLGRIG+ +A
Sbjct: 107 LAFALLLATARHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIA 166
Query: 115 LRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEV 174
R + F +++ + E +LN LED+ +D++ + PL +T +LIN E
Sbjct: 167 KRAKGFNXRILYYSRTRKEEVERELNAEFKPLEDLLRESDFVVLAVPLTRETYHLINEER 226
Query: 175 LKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKV 234
LK KK ++N+ARG +VD NAL+ +LK G GA LDVF EEP +E+ F+L V
Sbjct: 227 LKLXKKTAILINIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYYNEELFKL---DNV 283
Query: 235 IVTPHLGASTKEAQIRVAVEIAEQFIAL 262
++TPH+G+++ A+ A +A+ IA
Sbjct: 284 VLTPHIGSASFGAREGXAELVAKNLIAF 311
>pdb|3GA0|A Chain A, Ctbp1BARS GLY172->glu Mutant Structure: Impairing Nad(H)
Binding And Dimerization
Length = 358
Score = 133 bits (335), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 96/271 (35%), Positives = 145/271 (53%), Gaps = 12/271 (4%)
Query: 23 LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLK 82
L+++ R G+G DNID+ +A G+ V N P + + T I L R Q+L+
Sbjct: 89 LRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRTTWLHQALR 148
Query: 83 EG------KWDRKLYTGT-ELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVS--V 133
EG + R++ +G + G+TL ++GL R+G+ VALR +AFG V+ +DP +S +
Sbjct: 149 EGTRVQSVEQIREVASGAARIRGETLGIIGLERVGQAVALRAKAFGFNVLFYDPYLSDGI 208
Query: 134 EDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIV 193
E A L S L+D+ +D +T+H L +LIN +K+ ++G +VN ARGG+V
Sbjct: 209 ERALGLQRVST-LQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLV 267
Query: 194 DENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIRVAV 253
DE AL +LK G GAALDV EP Q L P +I TPH +++A I +
Sbjct: 268 DEKALAQALKEGRIRGAALDVHESEPFSFSQG-PLKDAPNLICTPHAAWYSEQASIEMRE 326
Query: 254 EIAEQFIALANTNPQYTSIQGVLNAPALAAS 284
E A + I A T S++ +N L A+
Sbjct: 327 EAARE-IRRAITGRIPDSLKNCVNKDHLTAA 356
>pdb|3NAQ|A Chain A, Apo-Form Of Nad-Dependent Formate Dehydrogenase From
Higher-Plant Arabidopsis Thaliana
pdb|3NAQ|B Chain B, Apo-Form Of Nad-Dependent Formate Dehydrogenase From
Higher-Plant Arabidopsis Thaliana
Length = 357
Score = 125 bits (314), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 78/231 (33%), Positives = 122/231 (52%), Gaps = 12/231 (5%)
Query: 29 AGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDR 88
AG G D+IDL AA G+ V G N +S E I L RN G + +G+W+
Sbjct: 99 AGIGSDHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMRILILMRNFVPGYNQVVKGEWNV 158
Query: 89 K--LYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFD-----PMVSVEDAAKLNI 141
Y +L GKT+ +G GRIG+ + R++ FG ++ D P + E AK
Sbjct: 159 AGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAKF-- 216
Query: 142 ASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDS 201
L ++ P D I ++ PL +T+ + N E++ K KKGV +VN ARG I++ A++D+
Sbjct: 217 -VEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAVVDA 275
Query: 202 LKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIRVA 252
++ GH GG + DV+ +P + + + P +TPH +T +AQ+R A
Sbjct: 276 VESGHIGGYSGDVWDPQPAPKDHPWRYM--PNQAMTPHTSGTTIDAQLRYA 324
>pdb|3N7U|A Chain A, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|B Chain B, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|C Chain C, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|D Chain D, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|E Chain E, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|F Chain F, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|G Chain G, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|H Chain H, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|I Chain I, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|J Chain J, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|K Chain K, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|L Chain L, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3JTM|A Chain A, Structure Of Recombinant Formate Dehydrogenase From
Arabidopsis Thaliana
Length = 351
Score = 125 bits (313), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 78/231 (33%), Positives = 122/231 (52%), Gaps = 12/231 (5%)
Query: 29 AGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDR 88
AG G D+IDL AA G+ V G N +S E I L RN G + +G+W+
Sbjct: 93 AGIGSDHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMRILILMRNFVPGYNQVVKGEWNV 152
Query: 89 K--LYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFD-----PMVSVEDAAKLNI 141
Y +L GKT+ +G GRIG+ + R++ FG ++ D P + E AK
Sbjct: 153 AGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAKF-- 210
Query: 142 ASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDS 201
L ++ P D I ++ PL +T+ + N E++ K KKGV +VN ARG I++ A++D+
Sbjct: 211 -VEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAVVDA 269
Query: 202 LKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIRVA 252
++ GH GG + DV+ +P + + + P +TPH +T +AQ+R A
Sbjct: 270 VESGHIGGYSGDVWDPQPAPKDHPWRYM--PNQAMTPHTSGTTIDAQLRYA 318
>pdb|2OME|A Chain A, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|B Chain B, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|C Chain C, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|D Chain D, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|E Chain E, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|F Chain F, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|G Chain G, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|H Chain H, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
Length = 336
Score = 124 bits (312), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 82/237 (34%), Positives = 126/237 (53%), Gaps = 9/237 (3%)
Query: 23 LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLK 82
L+V+ R G+G DN+D+ AA G+ V N P + T I L R Q+L+
Sbjct: 70 LRVIVRIGSGYDNVDIKAAGELGIAVCNIPSAAVEETADSTICHILNLYRRNTWLYQALR 129
Query: 83 EG------KWDRKLYTGT-ELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVED 135
EG + R++ +G + G+TL ++G GR G+ VA+R +AFG VI +DP +
Sbjct: 130 EGTRVQSVEQIREVASGAARIRGETLGLIGFGRTGQAVAVRAKAFGFSVIFYDPYLQDGI 189
Query: 136 AAKLNIASL-GLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVD 194
L + + L+D+ +D +++H L +LIN +K+ ++G +VN ARGG+VD
Sbjct: 190 ERSLGVQRVYTLQDLLYQSDCVSLHCNLNEHNHHLINDFTIKQMRQGAFLVNAARGGLVD 249
Query: 195 ENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIRV 251
E AL +LK G GAALDV EP Q L P +I TPH +++A + +
Sbjct: 250 EKALAQALKEGRIRGAALDVHESEPFSFAQG-PLKDAPNLICTPHTAWYSEQASLEM 305
>pdb|2CUK|A Chain A, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
pdb|2CUK|B Chain B, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
pdb|2CUK|C Chain C, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
pdb|2CUK|D Chain D, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
Length = 311
Score = 122 bits (305), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 96/259 (37%), Positives = 148/259 (57%), Gaps = 17/259 (6%)
Query: 4 GLVVRSDTKVTAEVL-QASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACEL 62
GL+ + ++ AEV+ +A L+V+ GVD++DL AA +G+ V + PG + +L
Sbjct: 46 GLIPTVEDRIDAEVMDRAKGLKVIACYSVGVDHVDLEAARERGIRVTHTPGVLTEATADL 105
Query: 63 TCSLISALSRNVPQGCQSLKEG---KWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQA 119
T +L+ A++R V +G ++G W +L G +L G TL ++G+GRIG+ VA R A
Sbjct: 106 TLALLLAVARRVVEGAAYARDGLWKAWHPELLLGLDLQGLTLGLVGMGRIGQAVAKRALA 165
Query: 120 FGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCK 179
FGM+V+ L L LE++ AD +++HTPL P+T L+N E L K
Sbjct: 166 FGMRVV-----YHARTPKPLPYPFLSLEELLKEADVVSLHTPLTPETHRLLNRERLFAMK 220
Query: 180 KGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEP-PKSEQTFELIKHPKVIVTP 238
+G ++N ARG +VD AL+++L+ GH GA LDV EP P + L P ++TP
Sbjct: 221 RGAILLNTARGALVDTEALVEALR-GHLFGAGLDVTDPEPLPPGHPLYAL---PNAVITP 276
Query: 239 HLGA---STKEAQIRVAVE 254
H+G+ +T+E VAVE
Sbjct: 277 HIGSAGRTTRERMAEVAVE 295
>pdb|4E5N|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|B Chain B, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|C Chain C, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|D Chain D, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|E Chain E, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|F Chain F, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|G Chain G, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|H Chain H, Thermostable Phosphite Dehydrogenase In Complex With Nad
Length = 330
Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 82/267 (30%), Positives = 139/267 (52%), Gaps = 12/267 (4%)
Query: 12 KVTAEVLQAS-NLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISAL 70
+V A+ LQA L+V+G A G DN D+ A T +GV + P + EL L L
Sbjct: 56 RVDADFLQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGL 115
Query: 71 SRNVPQGCQSLKEGK---WDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGF 127
R++ ++ GK W + Y GT L T+ LG+G IG +A R+Q +G +
Sbjct: 116 GRHLRAADAFVRSGKFRGWQPRFY-GTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYH 174
Query: 128 DP-MVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVN 186
+ + + +L + + +++ +D+I + PL T +L+NAE+L + G +VN
Sbjct: 175 EAKALDTQTEQRLGLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVN 234
Query: 187 VARGGIVDENALLDSLKCGHCGGAALDVF-CEEPPKSEQTFE----LIKHPKVIVTPHLG 241
RG +VDE A+L +L+ G GG A DVF E+ ++++ + L+ HP + TPH+G
Sbjct: 235 PCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIG 294
Query: 242 ASTKEAQIRVAVEIAEQFI-ALANTNP 267
++ + ++ + A+ + ALA P
Sbjct: 295 SAVRAVRLEIERCAAQNILQALAGERP 321
>pdb|4E5K|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
pdb|4E5K|B Chain B, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
pdb|4E5K|C Chain C, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
pdb|4E5K|D Chain D, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
Length = 329
Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 82/267 (30%), Positives = 139/267 (52%), Gaps = 12/267 (4%)
Query: 12 KVTAEVLQAS-NLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISAL 70
+V A+ LQA L+V+G A G DN D+ A T +GV + P + EL L L
Sbjct: 56 RVDADFLQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGL 115
Query: 71 SRNVPQGCQSLKEGK---WDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGF 127
R++ ++ GK W + Y GT L T+ LG+G IG +A R+Q +G +
Sbjct: 116 GRHLRAADAFVRSGKFRGWQPRFY-GTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYH 174
Query: 128 DP-MVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVN 186
+ + + +L + + +++ +D+I + PL T +L+NAE+L + G +VN
Sbjct: 175 EAKALDTQTEQRLGLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVN 234
Query: 187 VARGGIVDENALLDSLKCGHCGGAALDVF-CEEPPKSEQTFE----LIKHPKVIVTPHLG 241
RG +VDE A+L +L+ G GG A DVF E+ ++++ + L+ HP + TPH+G
Sbjct: 235 PCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIG 294
Query: 242 ASTKEAQIRVAVEIAEQFI-ALANTNP 267
++ + ++ + A+ + ALA P
Sbjct: 295 SAVRAVRLEIERCAAQNILQALAGERP 321
>pdb|1GDH|A Chain A, Crystal Structure Of A Nad-Dependent D-Glycerate
Dehydrogenase At 2.4 Angstroms Resolution
pdb|1GDH|B Chain B, Crystal Structure Of A Nad-Dependent D-Glycerate
Dehydrogenase At 2.4 Angstroms Resolution
Length = 320
Score = 115 bits (289), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 72/257 (28%), Positives = 127/257 (49%), Gaps = 10/257 (3%)
Query: 3 DGLVVRSDTKVTAEVLQ--ASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISAC 60
D L++ + K EV+ N++ + G D+IDL A +G+ V NAP G ++
Sbjct: 46 DALLITLNEKCRKEVIDRIPENIKCISTYSIGFDHIDLDACKARGIKVGNAPHGVTVATA 105
Query: 61 ELTCSLISALSRNVPQGCQSLKEGKW---DRKLYTGTELYGKTLAVLGLGRIGREVALRM 117
E+ L+ +R +G + ++ W + G +L KTL + G G IG+ +A R
Sbjct: 106 EIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRA 165
Query: 118 QAFGMKVIGFDPM--VSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVL 175
Q F M + FD S ++A+ L+ + ++ + +++ P P+T+ N +
Sbjct: 166 QGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATI 225
Query: 176 KKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVI 235
K +G VVN ARG +VD ++ +L+ G A DVF EP +E ++L P
Sbjct: 226 KSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEPNINEGYYDL---PNTF 282
Query: 236 VTPHLGASTKEAQIRVA 252
+ PH+G++ +A+ +A
Sbjct: 283 LFPHIGSAATQAREDMA 299
>pdb|2GUG|A Chain A, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
pdb|2GUG|B Chain B, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
pdb|2GUG|C Chain C, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
pdb|2GUG|D Chain D, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
Length = 401
Score = 115 bits (288), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 81/265 (30%), Positives = 130/265 (49%), Gaps = 9/265 (3%)
Query: 17 VLQASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQ 76
+ +A NL++ AG G D++DL +A + V V N IS E +I +L RN
Sbjct: 109 IAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLP 168
Query: 77 GCQSLKEGKWDRK--LYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVE 134
+ ++G W+ + +L + + GRIG V R+ F + + D E
Sbjct: 169 SHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPE 228
Query: 135 DAAK-LNIASLGL-EDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGI 192
K LN+ ED++P+ D +T++ PL P+T+++IN E LK K+G +VN ARG +
Sbjct: 229 SVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKL 288
Query: 193 VDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIRVA 252
D +A+ +L+ G G A DV+ +P + + + P +TPH+ +T AQ R A
Sbjct: 289 CDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTM--PYNGMTPHISGTTLTAQARYA 346
Query: 253 V---EIAEQFIALANTNPQYTSIQG 274
EI E F +Y +QG
Sbjct: 347 AGTREILEXFFEGRPIRDEYLIVQG 371
>pdb|4E5P|A Chain A, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|B Chain B, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|C Chain C, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|D Chain D, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|E Chain E, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|F Chain F, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
Length = 332
Score = 115 bits (287), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 81/267 (30%), Positives = 138/267 (51%), Gaps = 12/267 (4%)
Query: 12 KVTAEVLQAS-NLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISAL 70
+V A+ LQA L+V+G A G DN D+ A T +GV + P + EL L L
Sbjct: 56 RVDADFLQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGL 115
Query: 71 SRNVPQGCQSLKEGK---WDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKV-IG 126
R++ ++ G+ W + Y GT L T+ LG+G IG +A R+Q +G +
Sbjct: 116 GRHLRAADAFVRSGQFRGWQPRFY-GTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYH 174
Query: 127 FDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVN 186
+ + +L + + +++ +D+I + PL T +L+NAE+L + G +VN
Sbjct: 175 ARKALDTQTEQRLGLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVN 234
Query: 187 VARGGIVDENALLDSLKCGHCGGAALDVF-CEEPPKSEQTFE----LIKHPKVIVTPHLG 241
RG +VDE A+L +L+ G GG A DVF E+ ++++ + L+ HP + TPH+G
Sbjct: 235 PCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIG 294
Query: 242 ASTKEAQIRVAVEIAEQFI-ALANTNP 267
++ + ++ + A+ + ALA P
Sbjct: 295 SAVRAVRLEIERCAAQNILQALAGERP 321
>pdb|4E5M|A Chain A, Thermostable Phosphite Dehydrogenase E175aA176R IN COMPLEX
WITH NADP
pdb|4E5M|B Chain B, Thermostable Phosphite Dehydrogenase E175aA176R IN COMPLEX
WITH NADP
Length = 329
Score = 115 bits (287), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 81/267 (30%), Positives = 138/267 (51%), Gaps = 12/267 (4%)
Query: 12 KVTAEVLQAS-NLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISAL 70
+V A+ LQA L+V+G A G DN D+ A T +GV + P + EL L L
Sbjct: 56 RVDADFLQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGL 115
Query: 71 SRNVPQGCQSLKEGK---WDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKV-IG 126
R++ ++ G+ W + Y GT L T+ LG+G IG +A R+Q +G +
Sbjct: 116 GRHLRAADAFVRSGQFRGWQPRFY-GTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYH 174
Query: 127 FDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVN 186
+ + +L + + +++ +D+I + PL T +L+NAE+L + G +VN
Sbjct: 175 ARKALDTQTEQRLGLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVN 234
Query: 187 VARGGIVDENALLDSLKCGHCGGAALDVF-CEEPPKSEQTFE----LIKHPKVIVTPHLG 241
RG +VDE A+L +L+ G GG A DVF E+ ++++ + L+ HP + TPH+G
Sbjct: 235 PCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIG 294
Query: 242 ASTKEAQIRVAVEIAEQFI-ALANTNP 267
++ + ++ + A+ + ALA P
Sbjct: 295 SAVRAVRLEIERCAAQNILQALAGERP 321
>pdb|2GO1|A Chain A, Nad-Dependent Formate Dehydrogenase From Pseudomonas
Sp.101
Length = 401
Score = 114 bits (286), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 81/265 (30%), Positives = 130/265 (49%), Gaps = 9/265 (3%)
Query: 17 VLQASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQ 76
+ +A NL++ AG G D++DL +A + V V N IS E +I +L RN
Sbjct: 109 IAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLP 168
Query: 77 GCQSLKEGKWDRK--LYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVE 134
+ ++G W+ + +L + + GRIG V R+ F + + D E
Sbjct: 169 SHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPE 228
Query: 135 DAAK-LNIASLGL-EDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGI 192
K LN+ ED++P+ D +T++ PL P+T+++IN E LK K+G +VN ARG +
Sbjct: 229 SVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKL 288
Query: 193 VDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIRVA 252
D +A+ +L+ G G A DV+ +P + + + P +TPH+ +T AQ R A
Sbjct: 289 CDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTM--PYNGMTPHISGTTLTAQARYA 346
Query: 253 V---EIAEQFIALANTNPQYTSIQG 274
EI E F +Y +QG
Sbjct: 347 AGTREILECFFEGRPIRDEYLIVQG 371
>pdb|2NAC|A Chain A, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
pdb|2NAC|B Chain B, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
pdb|2NAD|A Chain A, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
pdb|2NAD|B Chain B, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
Length = 393
Score = 114 bits (285), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 81/265 (30%), Positives = 130/265 (49%), Gaps = 9/265 (3%)
Query: 17 VLQASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQ 76
+ +A NL++ AG G D++DL +A + V V N IS E +I +L RN
Sbjct: 108 IAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLP 167
Query: 77 GCQSLKEGKWDRK--LYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVE 134
+ ++G W+ + +L + + GRIG V R+ F + + D E
Sbjct: 168 SHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPE 227
Query: 135 DAAK-LNIASLGL-EDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGI 192
K LN+ ED++P+ D +T++ PL P+T+++IN E LK K+G +VN ARG +
Sbjct: 228 SVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKL 287
Query: 193 VDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIRVA 252
D +A+ +L+ G G A DV+ +P + + + P +TPH+ +T AQ R A
Sbjct: 288 CDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTM--PYNGMTPHISGTTLTAQARYA 345
Query: 253 V---EIAEQFIALANTNPQYTSIQG 274
EI E F +Y +QG
Sbjct: 346 AGTREILECFFEGRPIRDEYLIVQG 370
>pdb|3GG9|A Chain A, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
pdb|3GG9|B Chain B, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
pdb|3GG9|C Chain C, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
pdb|3GG9|D Chain D, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
Length = 352
Score = 114 bits (284), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 84/259 (32%), Positives = 133/259 (51%), Gaps = 19/259 (7%)
Query: 5 LVVRSDTKVTAEVL-QASNLQVVGRAG----TGVDNIDLTAATRKGVLVLNAPGGNFISA 59
+++R T+VT ++L + L+++ + G +IDL A T KGV+VL G ++
Sbjct: 53 VLIRERTRVTRQLLDRLPKLKIISQTGRVSRDAGGHIDLEACTDKGVVVLEGKGSP-VAP 111
Query: 60 CELTCSLISALSRNVPQGCQSLKEGKWDR----------KLYTGTELYGKTLAVLGLGRI 109
ELT +L+ A R +PQ SLK G W + G L G+TL + G G+I
Sbjct: 112 AELTWALVMAAQRRIPQYVASLKHGAWQQSGLKSTTMPPNFGIGRVLKGQTLGIFGYGKI 171
Query: 110 GREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLED-IWPLADYITVHTPLIPQTKN 168
G+ VA +AFGM V+ + S E A A +D ++ +D ++VH L +T++
Sbjct: 172 GQLVAGYGRAFGMNVLVWGRENSKERARADGFAVAESKDALFEQSDVLSVHLRLNDETRS 231
Query: 169 LINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFEL 228
+I L + K VN +R +V+EN ++ +L G G AA+DVF EP T L
Sbjct: 232 IITVADLTRMKPTALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFETEPILQGHT--L 289
Query: 229 IKHPKVIVTPHLGASTKEA 247
++ I TPH+G +E+
Sbjct: 290 LRMENCICTPHIGYVERES 308
>pdb|1DXY|A Chain A, Structure Of D-2-Hydroxyisocaproate Dehydrogenase
Length = 333
Score = 113 bits (283), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 76/264 (28%), Positives = 122/264 (46%), Gaps = 23/264 (8%)
Query: 2 YDGLVVRSDTKVTA---EVLQASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFIS 58
+DG+ T A E + A ++ + G DNID+TA + G+ + N P + +
Sbjct: 45 FDGINSLQTTPYAAGVFEKMHAYGIKFLTIRNVGTDNIDMTAMKQYGIRLSNVPAYSPAA 104
Query: 59 ACELTCSLISALSRNVPQGCQSLKEGKWDRK-LYTGTELYGKTLAVLGLGRIGREVALRM 117
E + L RN+ + L+ G +++ + G EL +T+ V+G G IG+
Sbjct: 105 IAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTFIGKELGQQTVGVMGTGHIGQVAIKLF 164
Query: 118 QAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKK 177
+ FG KVI +DP D + SL ED++ +D I +H P I Q ++IN
Sbjct: 165 KGFGAKVIAYDPYPMKGDHPDFDYVSL--EDLFKQSDVIDLHVPGIEQNTHIINEAAFNL 222
Query: 178 CKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKH------ 231
K G V+N AR ++D A+L +LK G G +D + E +E L KH
Sbjct: 223 MKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYE---TEDLLNLAKHGSFKDP 279
Query: 232 --------PKVIVTPHLGASTKEA 247
P V+++PH+ T+ A
Sbjct: 280 LWDELLGMPNVVLSPHIAYYTETA 303
>pdb|4EBF|A Chain A, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|B Chain B, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|C Chain C, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|D Chain D, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|E Chain E, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|F Chain F, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
Length = 334
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/267 (30%), Positives = 136/267 (50%), Gaps = 12/267 (4%)
Query: 12 KVTAEVLQA-SNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISAL 70
+V A+ LQA L+V+G A G DN D+ A T +GV + P + EL L L
Sbjct: 57 RVDADFLQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGL 116
Query: 71 SRNVPQGCQSLKEGK---WDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKV-IG 126
R++ ++ G+ W + Y GT L T+ LG G IG A R+Q +G +
Sbjct: 117 GRHLRAADAFVRSGQFRGWQPRFY-GTGLDNATVGFLGXGAIGLAXADRLQGWGATLQYH 175
Query: 127 FDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVN 186
+ + +L + + +++ +D+I + PL T +L+NAE+L + G +VN
Sbjct: 176 AAKALDTQTEQRLGLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVN 235
Query: 187 VARGGIVDENALLDSLKCGHCGGAALDVF-CEEPPKSEQTFE----LIKHPKVIVTPHLG 241
RG +VDE A+L +L+ G GG A DVF E+ ++++ + L+ HP + TPH+G
Sbjct: 236 PCRGSVVDEAAVLAALERGQLGGYAADVFEXEDWARADRPQQIDPALLAHPNTLFTPHIG 295
Query: 242 ASTKEAQIRVAVEIAEQFI-ALANTNP 267
++ + ++ + A+ + ALA P
Sbjct: 296 SAVRAVRLEIERCAAQNILQALAGERP 322
>pdb|4DGS|A Chain A, The Crystals Structure Of Dehydrogenase From Rhizobium
Meliloti
Length = 340
Score = 112 bits (279), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 79/230 (34%), Positives = 119/230 (51%), Gaps = 10/230 (4%)
Query: 22 NLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSL 81
+L ++ G G D +DL A R+ + V PG +L +L A+ R V G + +
Sbjct: 93 SLGIIAINGVGTDKVDLARARRRNIDVTTTPGVLADDVADLGIALXLAVLRRVGDGDRLV 152
Query: 82 KEGKW--DRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFD-PMVSVEDAAK 138
+EG+W +L G GK + VLGLG+IGR +A R +AFG V ++ +S D
Sbjct: 153 REGRWAAGEQLPLGHSPKGKRIGVLGLGQIGRALASRAEAFGXSVRYWNRSTLSGVDW-- 210
Query: 139 LNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENAL 198
IA D+ +D + V T+N+++A +L+ VVNVARG +VDE+AL
Sbjct: 211 --IAHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGNVVDEDAL 268
Query: 199 LDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQ 248
+++LK G GA LDVF EP E P ++ PH G++T E +
Sbjct: 269 IEALKSGTIAGAGLDVFVNEPAIRS---EFHTTPNTVLXPHQGSATVETR 315
>pdb|3KB6|A Chain A, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
pdb|3KB6|B Chain B, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
pdb|3KB6|C Chain C, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
pdb|3KB6|D Chain D, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
Length = 334
Score = 110 bits (274), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 82/268 (30%), Positives = 134/268 (50%), Gaps = 21/268 (7%)
Query: 12 KVTAEVL-QASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISAL 70
K+T E+L + L+++ G D+IDL +KG+LV + P + S E T + I L
Sbjct: 53 KLTEELLSKXPRLKLIHTRSVGFDHIDLDYCKKKGILVTHIPAYSPESVAEHTFAXILTL 112
Query: 71 SRNVPQGCQSLKEGKW--DRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFD 128
+ + + +K+ + D ++ EL TL V+G GRIG VA AFG KV+ +D
Sbjct: 113 VKRLKRIEDRVKKLNFSQDSEI-LARELNRLTLGVIGTGRIGSRVAXYGLAFGXKVLCYD 171
Query: 129 PMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVA 188
+V ED + L+++ +D I++H P +T + IN E + K GV ++N A
Sbjct: 172 -VVKREDLKEKGCVYTSLDELLKESDVISLHVPYTKETHHXINEERISLXKDGVYLINTA 230
Query: 189 RGGIVDENALLDSLKCGHCGGAALDVFCEEP-------------PKSEQTFELIKHPKVI 235
RG +VD +AL + + G G LDVF +E K+ + EL VI
Sbjct: 231 RGKVVDTDALYRAYQRGKFSGLGLDVFEDEEILILKKYTEGKATDKNLKILELACKDNVI 290
Query: 236 VTPHLGASTKEAQIRV---AVEIAEQFI 260
+TPH+ T ++ R+ V++ + F+
Sbjct: 291 ITPHIAYYTDKSLERIREETVKVVKAFV 318
>pdb|3BA1|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus
Blu
pdb|3BAZ|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus
Blumei In Complex With Nadp+
Length = 333
Score = 108 bits (269), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 84/246 (34%), Positives = 124/246 (50%), Gaps = 16/246 (6%)
Query: 9 SDTKVTAEVLQA-SNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLI 67
S+ AE++ A L++V G+D +DL KGV V N P +L LI
Sbjct: 73 SNAGADAELIDALPKLEIVSSFSVGLDKVDLIKCEEKGVRVTNTPDVLTDDVADLAIGLI 132
Query: 68 SALSRNVPQGCQSLKEGKW---DRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKV 124
A+ R + + + ++ G W D KL T + GK + ++GLGRIG VA R +AF +
Sbjct: 133 LAVLRRICECDKYVRRGAWKFGDFKLTT--KFSGKRVGIIGLGRIGLAVAERAEAFDCPI 190
Query: 125 IGFDPMVSVEDAAKLNIASLG-LEDIWPLADYITVHTPLIPQTKNLINAEVLKKC-KKGV 182
F S N G + ++ +D + V PL P+T ++IN EV+ KGV
Sbjct: 191 SYF----SRSKKPNTNYTYYGSVVELASNSDILVVACPLTPETTHIINREVIDALGPKGV 246
Query: 183 RVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGA 242
++N+ RG VDE L+ +L G GGA LDVF EP E+ F L V++ PH+G+
Sbjct: 247 -LINIGRGPHVDEPELVSALVEGRLGGAGLDVFEREPEVPEKLFGL---ENVVLLPHVGS 302
Query: 243 STKEAQ 248
T E +
Sbjct: 303 GTVETR 308
>pdb|2GCG|A Chain A, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2GCG|B Chain B, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2GCG|C Chain C, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2GCG|D Chain D, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2WWR|A Chain A, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
pdb|2WWR|B Chain B, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
pdb|2WWR|C Chain C, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
pdb|2WWR|D Chain D, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
Length = 330
Score = 107 bits (267), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 73/278 (26%), Positives = 136/278 (48%), Gaps = 12/278 (4%)
Query: 4 GLVVRSDTKVTAEVLQAS--NLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACE 61
GL+ V +L A+ NL+V+ G+D++ L ++G+ V P + E
Sbjct: 56 GLLCLLSDHVDKRILDAAGANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAE 115
Query: 62 LTCSLISALSRNVPQGCQSLKEGKWD--RKLY-TGTELYGKTLAVLGLGRIGREVALRMQ 118
L SL+ R +P+ + +K G W + L+ G L T+ ++GLGRIG+ +A R++
Sbjct: 116 LAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLK 175
Query: 119 AFGMK---VIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVL 175
FG++ G P E+AA+ + ++ +D+I V L P T+ L N +
Sbjct: 176 PFGVQRFLYTGRQP--RPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFF 233
Query: 176 KKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVI 235
+K K+ +N++RG +V+++ L +L G A LDV EP + +K+ +
Sbjct: 234 QKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKN--CV 291
Query: 236 VTPHLGASTKEAQIRVAVEIAEQFIALANTNPQYTSIQ 273
+ PH+G++T + +++ A +A P + ++
Sbjct: 292 ILPHIGSATHRTRNTMSLLAANNLLAGLRGEPMPSELK 329
>pdb|2H1S|A Chain A, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2H1S|B Chain B, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2H1S|C Chain C, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2H1S|D Chain D, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2Q50|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
pdb|2Q50|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
pdb|2Q50|C Chain C, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
pdb|2Q50|D Chain D, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
Length = 328
Score = 105 bits (263), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 73/278 (26%), Positives = 135/278 (48%), Gaps = 12/278 (4%)
Query: 4 GLVVRSDTKVTAEVLQAS--NLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACE 61
GL+ V +L A+ NL+V+ G+D++ L ++G+ V P + E
Sbjct: 54 GLLCLLSDHVDKRILDAAGANLKVISTXSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAE 113
Query: 62 LTCSLISALSRNVPQGCQSLKEGKWD--RKLY-TGTELYGKTLAVLGLGRIGREVALRMQ 118
L SL+ R +P+ + +K G W + L+ G L T+ ++GLGRIG+ +A R++
Sbjct: 114 LAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLK 173
Query: 119 AFGMK---VIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVL 175
FG++ G P E+AA+ + ++ +D+I V L P T+ L N +
Sbjct: 174 PFGVQRFLYTGRQP--RPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFF 231
Query: 176 KKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVI 235
+K K+ +N++RG +V+++ L +L G A LDV EP + +K+ +
Sbjct: 232 QKXKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKN--CV 289
Query: 236 VTPHLGASTKEAQIRVAVEIAEQFIALANTNPQYTSIQ 273
+ PH+G++T + ++ A +A P + ++
Sbjct: 290 ILPHIGSATHRTRNTXSLLAANNLLAGLRGEPXPSELK 327
>pdb|2YQ4|A Chain A, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ4|B Chain B, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ4|C Chain C, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ4|D Chain D, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ5|A Chain A, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
pdb|2YQ5|B Chain B, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
pdb|2YQ5|C Chain C, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
pdb|2YQ5|D Chain D, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
Length = 343
Score = 104 bits (260), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 77/262 (29%), Positives = 121/262 (46%), Gaps = 22/262 (8%)
Query: 10 DTKVTAEVLQASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISA 69
D +V + L ++ +G G + I+ + +LV N P + + E+T +
Sbjct: 58 DEEVVYQKLSEYGVKCIGLRIVGFNTINFDWTKKYNLLVTNVPVYSPRAIAEMTVTQAMY 117
Query: 70 LSRNVPQGCQSLKEGK---WDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIG 126
L R + + + W L + E+Y T+ ++G+G IG VA A G KVI
Sbjct: 118 LLRKIGEFRYRMDHDHDFTWPSNLISN-EIYNLTVGLIGVGHIGSAVAEIFSAMGAKVIA 176
Query: 127 FDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVN 186
+D + E L + + AD +++HTPL P T+N+I + LK+ KK ++N
Sbjct: 177 YDVAYNPEFEPFLTYTDF--DTVLKEADIVSLHTPLFPSTENMIGEKQLKEMKKSAYLIN 234
Query: 187 VARGGIVDENALLDSLKCGHCGGAALDVFC-------------EEPPKSEQTFELIKHPK 233
ARG +VD AL+ +L+ G GA LD E P+ +T L K P
Sbjct: 235 CARGELVDTGALIKALQDGEIAGAGLDTLAGESSYFGHTGLTDSEIPEDYKT--LAKMPN 292
Query: 234 VIVTPHLGASTKEAQIRVAVEI 255
V++TPH A E IR V+I
Sbjct: 293 VVITPH-SAFYTETSIRNMVQI 313
>pdb|1J49|A Chain A, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J49|B Chain B, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
Length = 333
Score = 102 bits (253), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 77/259 (29%), Positives = 118/259 (45%), Gaps = 15/259 (5%)
Query: 3 DGLVVRSDTKVTAEVLQA---SNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISA 59
DG+VV AE LQA + + + GVDNID+ A G + N P + +
Sbjct: 48 DGVVVYQQLDYIAETLQALADNGITKMSLRNVGVDNIDMAKAKELGFQITNVPVYSPNAI 107
Query: 60 CELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQA 119
E + + R + + G E+ + + V+G G IG+ M+
Sbjct: 108 AEHAAIQAARILRQDKAMDEKVARHDLRWAPTIGREVRDQVVGVVGTGHIGQVFMQIMEG 167
Query: 120 FGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCK 179
FG KVI +D + E K L+D++ AD I++H P +P ++IN E + K K
Sbjct: 168 FGAKVITYDIFRNPE-LEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMK 226
Query: 180 KGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFE-----------L 228
+ V +VNV+RG +VD +A++ L G G A+DV+ E + +E L
Sbjct: 227 QDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADL 286
Query: 229 IKHPKVIVTPHLGASTKEA 247
I P V+VTPH T A
Sbjct: 287 IARPNVLVTPHTAFYTTHA 305
>pdb|2J6I|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
pdb|2J6I|B Chain B, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
pdb|2J6I|C Chain C, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
pdb|2J6I|D Chain D, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
Length = 364
Score = 101 bits (252), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 81/258 (31%), Positives = 123/258 (47%), Gaps = 19/258 (7%)
Query: 19 QASNLQVVGRAGTGVDNIDLTA--ATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQ 76
+A L++V AG G D+IDL T K + VL G N +S E + L RN
Sbjct: 81 KAKKLKLVVVAGVGSDHIDLDYINQTGKKISVLEVTGSNVVSVAEHVVMTMLVLVRNFVP 140
Query: 77 GCQSLKEGKWD-----RKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV 131
+ + W+ + Y ++ GKT+A +G GRIG V R+ F K + +
Sbjct: 141 AHEQIINHDWEVAAIAKDAY---DIEGKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQ 197
Query: 132 SVEDAAKLNIASLGLEDIWPL---ADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVA 188
++ A+ + + +E+I L AD +TV+ PL TK LIN E+L K KKG +VN A
Sbjct: 198 ALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTA 257
Query: 189 RGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPK---VIVTPHLGASTK 245
RG I + +L+ G G DV+ +P + + +++ +TPH +T
Sbjct: 258 RGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGNAMTPHYSGTTL 317
Query: 246 EAQIRVA---VEIAEQFI 260
+AQ R A V I E F
Sbjct: 318 DAQTRYAQGTVNILESFF 335
>pdb|4G2N|A Chain A, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
pdb|4G2N|B Chain B, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
pdb|4G2N|C Chain C, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
pdb|4G2N|D Chain D, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
Length = 345
Score = 101 bits (252), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 67/249 (26%), Positives = 120/249 (48%), Gaps = 8/249 (3%)
Query: 5 LVVRSDTKVTAEVLQA--SNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACEL 62
L V + +TAEV++ L+ + G D+ID AA G+ VL+ P + E+
Sbjct: 75 LFVTATEAITAEVIRKLQPGLKTIATLSVGYDHIDXAAARSLGIKVLHTPDVLSDACAEI 134
Query: 63 TCSLISALSRNVPQGCQSLKEGKWDRKLYT---GTELYGKTLAVLGLGRIGREVALRMQA 119
L+ R + + ++ G W T G L G+ L + G GRIGR +A R +
Sbjct: 135 AXLLVLNACRRGYEADRXVRSGSWPGWGPTQLLGXGLTGRRLGIFGXGRIGRAIATRARG 194
Query: 120 FGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCK 179
FG+ + + + I L+ + +D + P P+ K ++ + + K
Sbjct: 195 FGLAIHYHNRTRLSHALEEGAIYHDTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIP 254
Query: 180 KGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPH 239
+G V+N++RG +++++AL+++L+ H A LDVF EP + L + +TPH
Sbjct: 255 EGAVVINISRGDLINDDALIEALRSKHLFAAGLDVFANEPAIDPRYRSL---DNIFLTPH 311
Query: 240 LGASTKEAQ 248
+G++T E +
Sbjct: 312 IGSATHETR 320
>pdb|3FN4|A Chain A, Apo-form Of Nad-dependent Formate Dehydrogenase From
Bacterium Moraxella Sp.c-1 In Closed Conformation
Length = 401
Score = 101 bits (252), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 78/270 (28%), Positives = 128/270 (47%), Gaps = 10/270 (3%)
Query: 13 VTAE-VLQASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALS 71
+TAE + +A L++ AG G D++DL AA + V N S E ++ L
Sbjct: 103 LTAERIAKAPKLKLALTAGIGSDHVDLQAAIDNNITVAEVTYCNSNSVAEHVVMMVLGLV 162
Query: 72 RNVPQGCQSLKEGKWDRK--LYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDP 129
RN + G W+ + ++ G + + GRIG V + F M + D
Sbjct: 163 RNYIPSHDWARNGGWNIADCVARSYDVEGMHVGTVAAGRIGLRVLRLLAPFDMHLHYTDR 222
Query: 130 MVSVEDAAK-LNIASLGL-EDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNV 187
E K LN+ ED++ D +T++ PL P+T+++IN E LK K+G +VN
Sbjct: 223 HRLPEAVEKELNLTWHATREDMYGACDVVTLNCPLHPETEHMINDETLKLFKRGAYLVNT 282
Query: 188 ARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEA 247
ARG + D +A++ +L+ G G A DV+ +P ++ + + H +TPH+ ++ A
Sbjct: 283 ARGKLCDRDAIVRALESGRLAGYAGDVWFPQPAPNDHPWRTMPHNG--MTPHISGTSLSA 340
Query: 248 QIRVAV---EIAEQFIALANTNPQYTSIQG 274
Q R A EI E + +Y +QG
Sbjct: 341 QTRYAAGTREILECYFEGRPIRDEYLIVQG 370
>pdb|2GSD|A Chain A, Nad-dependent Formate Dehydrogenase From Bacterium
Moraxella Sp.c2 In Complex With Nad And Azide
Length = 402
Score = 101 bits (252), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 78/270 (28%), Positives = 128/270 (47%), Gaps = 10/270 (3%)
Query: 13 VTAE-VLQASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALS 71
+TAE + +A L++ AG G D++DL AA + V N S E ++ L
Sbjct: 104 LTAERIAKAPKLKLALTAGIGSDHVDLQAAIDNNITVAEVTYCNSNSVAEHVVMMVLGLV 163
Query: 72 RNVPQGCQSLKEGKWDRK--LYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDP 129
RN + G W+ + ++ G + + GRIG V + F M + D
Sbjct: 164 RNYIPSHDWARNGGWNIADCVARSYDVEGMHVGTVAAGRIGLRVLRLLAPFDMHLHYTDR 223
Query: 130 MVSVEDAAK-LNIASLGL-EDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNV 187
E K LN+ ED++ D +T++ PL P+T+++IN E LK K+G +VN
Sbjct: 224 HRLPEAVEKELNLTWHATREDMYGACDVVTLNCPLHPETEHMINDETLKLFKRGAYLVNT 283
Query: 188 ARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEA 247
ARG + D +A++ +L+ G G A DV+ +P ++ + + H +TPH+ ++ A
Sbjct: 284 ARGKLCDRDAIVRALESGRLAGYAGDVWFPQPAPNDHPWRTMPHNG--MTPHISGTSLSA 341
Query: 248 QIRVAV---EIAEQFIALANTNPQYTSIQG 274
Q R A EI E + +Y +QG
Sbjct: 342 QTRYAAGTREILECYFEGRPIRDEYLIVQG 371
>pdb|2DLD|A Chain A, D-Lactate Dehydrogenase Complexed With Nadh And Oxamate
pdb|2DLD|B Chain B, D-Lactate Dehydrogenase Complexed With Nadh And Oxamate
Length = 337
Score = 100 bits (248), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 77/278 (27%), Positives = 129/278 (46%), Gaps = 19/278 (6%)
Query: 3 DGLVVRSDTKVTAEVLQA---SNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISA 59
DG+VV TA+ LQA + + + GVDNID+ A G + N P + +
Sbjct: 48 DGVVVYQQLDYTADTLQALADAGVTKMSLRNVGVDNIDMDKAKELGFQITNVPVYSPNAI 107
Query: 60 CELTCSLISALSRNVPQGCQSL--KEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRM 117
E + + R + + + ++ +W + G E+ + + V+G G IG+ M
Sbjct: 108 AEHAAIQAARVLRQDKRMDEKMAKRDLRWAPTI--GREVRDQVVGVVGTGHIGQVFMRIM 165
Query: 118 QAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKK 177
+ FG KVI +D + E K L+D++ AD I++H P +P ++IN + + +
Sbjct: 166 EGFGAKVIAYDIFKNPE-LEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDKSIAE 224
Query: 178 CKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFE---------- 227
K GV +VN +RG +VD +A++ L G G +D + +E + +E
Sbjct: 225 MKDGVVIVNCSRGRLVDTDAVIRGLDSGKIFGFVMDTYEDEVGVFNKDWEGKEFPDKRLA 284
Query: 228 -LIKHPKVIVTPHLGASTKEAQIRVAVEIAEQFIALAN 264
LI P V+VTPH T A + V+ + L N
Sbjct: 285 DLIDRPNVLVTPHTAFYTTHAVRNMVVKAFNNNLKLIN 322
>pdb|2FSS|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
pdb|2FSS|B Chain B, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
pdb|2FSS|C Chain C, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
pdb|2FSS|D Chain D, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
Length = 365
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 119/247 (48%), Gaps = 16/247 (6%)
Query: 19 QASNLQVVGRAGTGVDNIDLTA--ATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQ 76
+A L++V AG G D+IDL T K + VL G N +S E + L RN
Sbjct: 82 KAKKLKLVVVAGVGSDHIDLDYINQTGKKISVLEVTGSNVVSVAEHVVMTMLVLVRNFVP 141
Query: 77 GCQSLKEGKWD-----RKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV 131
+ + W+ + Y ++ GKT+A +G GRIG V R+ F K + +
Sbjct: 142 AHEQIINHDWEVAAIAKDAY---DIEGKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQ 198
Query: 132 SVEDAAKLNIASLGLEDIWPL---ADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVA 188
++ A+ + + +E+I L AD +TV+ PL TK LIN E+L K KKG +VN A
Sbjct: 199 ALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTA 258
Query: 189 RGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPK---VIVTPHLGASTK 245
RG I + +L+ G G DV+ +P + + +++ +TPH +T
Sbjct: 259 RGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGNAMTPHYSGTTL 318
Query: 246 EAQIRVA 252
+AQ R A
Sbjct: 319 DAQTRYA 325
>pdb|1J4A|A Chain A, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J4A|B Chain B, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J4A|C Chain C, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J4A|D Chain D, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
Length = 333
Score = 98.2 bits (243), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 76/259 (29%), Positives = 117/259 (45%), Gaps = 15/259 (5%)
Query: 3 DGLVVRSDTKVTAEVLQA---SNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISA 59
DG+VV AE LQA + + + GVDNID+ A G + N P + +
Sbjct: 48 DGVVVYQQLDYIAETLQALADNGITKMSLRNVGVDNIDMAKAKELGFQITNVPVYSPNAI 107
Query: 60 CELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQA 119
E + + R + + G E+ + + V+G G IG+ M+
Sbjct: 108 AEHAAIQAARILRQDKAMDEKVARHDLRWAPTIGREVRDQVVGVVGTGHIGQVFMQIMEG 167
Query: 120 FGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCK 179
FG KVI +D + E K L+D++ AD I++H P +P ++IN E + K K
Sbjct: 168 FGAKVITYDIFRNPE-LEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMK 226
Query: 180 KGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFE-----------L 228
+ V +VNV+RG +VD +A++ L G G A+DV+ E + +E L
Sbjct: 227 QDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADL 286
Query: 229 IKHPKVIVTPHLGASTKEA 247
I P V+VTP T A
Sbjct: 287 IARPNVLVTPKTAFYTTHA 305
>pdb|2W2L|D Chain D, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a
Length = 348
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 83/268 (30%), Positives = 130/268 (48%), Gaps = 29/268 (10%)
Query: 21 SNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQS 80
S+L+V AG G D +DL A +GV N+ G + +L LI ++ R ++
Sbjct: 79 SSLKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERA 138
Query: 81 LKEGK---WDR-KLYTGTELY---GKTLAVLGLGRIGREVALR-MQAFGMKVIGFDPMVS 132
+ G ++R L G + G L +GLG I +E+A + + GMK++ +D V+
Sbjct: 139 ARTGDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYD--VA 196
Query: 133 VEDAAKLNIASLG------LEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVN 186
DA +LG LE++ +D ++V P + T +LI+ K G R+VN
Sbjct: 197 PADAETEK--ALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVN 254
Query: 187 VARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKE 246
ARG ++ ++AL+ +LK G A LDV EP S+ ELI+ V +T H+G
Sbjct: 255 TARGPVISQDALIAALKSGKLLSAGLDVHEFEPQVSK---ELIEMKHVTLTTHIGG---- 307
Query: 247 AQIRVAVEIAEQFIALANTNPQYTSIQG 274
VA+E +F L TN +QG
Sbjct: 308 ----VAIETFHEFERLTMTNIDRFLLQG 331
>pdb|2W2K|A Chain A, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis
D-Mandelate Dehydrogenase At 1.8a.
pdb|2W2L|A Chain A, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a.
pdb|2W2L|B Chain B, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a.
pdb|2W2L|C Chain C, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a
Length = 348
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 83/268 (30%), Positives = 130/268 (48%), Gaps = 29/268 (10%)
Query: 21 SNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQS 80
S+L+V AG G D +DL A +GV N+ G + +L LI ++ R ++
Sbjct: 79 SSLKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERA 138
Query: 81 LKEGK---WDR-KLYTGTELY---GKTLAVLGLGRIGREVALR-MQAFGMKVIGFDPMVS 132
+ G ++R L G + G L +GLG I +E+A + + GMK++ +D V+
Sbjct: 139 ARTGDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYD--VA 196
Query: 133 VEDAAKLNIASLG------LEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVN 186
DA +LG LE++ +D ++V P + T +LI+ K G R+VN
Sbjct: 197 PADAETEK--ALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVN 254
Query: 187 VARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKE 246
ARG ++ ++AL+ +LK G A LDV EP S+ ELI+ V +T H+G
Sbjct: 255 TARGPVISQDALIAALKSGKLLSAGLDVHEFEPQVSK---ELIEMKHVTLTTHIGG---- 307
Query: 247 AQIRVAVEIAEQFIALANTNPQYTSIQG 274
VA+E +F L TN +QG
Sbjct: 308 ----VAIETFHEFERLTMTNIDRFLLQG 331
>pdb|2W2K|B Chain B, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis
D-Mandelate Dehydrogenase At 1.8a
Length = 348
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 83/268 (30%), Positives = 130/268 (48%), Gaps = 29/268 (10%)
Query: 21 SNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQS 80
S+L+V AG G D +DL A +GV N+ G + +L LI ++ R ++
Sbjct: 79 SSLKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERA 138
Query: 81 LKEGK---WDR-KLYTGTELY---GKTLAVLGLGRIGREVALR-MQAFGMKVIGFDPMVS 132
+ G ++R L G + G L +GLG I +E+A + + GMK++ +D V+
Sbjct: 139 ARTGDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYD--VA 196
Query: 133 VEDAAKLNIASLG------LEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVN 186
DA +LG LE++ +D ++V P + T +LI+ K G R+VN
Sbjct: 197 PADAETEK--ALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVN 254
Query: 187 VARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKE 246
ARG ++ ++AL+ +LK G A LDV EP S+ ELI+ V +T H+G
Sbjct: 255 TARGPVISQDALIAALKSGKLLSAGLDVHEFEPNVSK---ELIEMKHVTLTTHIGG---- 307
Query: 247 AQIRVAVEIAEQFIALANTNPQYTSIQG 274
VA+E +F L TN +QG
Sbjct: 308 ----VAIETFHEFERLTMTNIDRFLLQG 331
>pdb|3OET|A Chain A, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|B Chain B, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|C Chain C, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|D Chain D, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|E Chain E, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|F Chain F, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|G Chain G, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|H Chain H, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
Length = 381
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 76/284 (26%), Positives = 125/284 (44%), Gaps = 32/284 (11%)
Query: 3 DGLVVRSDTKVTAEVLQASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACEL 62
D L VRS TKV +L + + VG A G D++D + G+ APG N I+ E
Sbjct: 42 DALXVRSVTKVNESLLSGTPINFVGTATAGTDHVDEAWLKQAGIGFSAAPGCNAIAVVEY 101
Query: 63 TCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGM 122
S + L+ G L +T+ ++G+G +G + R++A G+
Sbjct: 102 VFSALLXLAER------------------DGFSLRDRTIGIVGVGNVGSRLQTRLEALGI 143
Query: 123 KVIGFDPMVSVE-DAAKLNIASLGLEDIWPLADYITVHTPLIP----QTKNLINAEVLKK 177
+ + DP + D L+++ AD +T HTPL +T +L + ++++
Sbjct: 144 RTLLCDPPRAARGDEGDFRT----LDELVQEADVLTFHTPLYKDGPYKTLHLADETLIRR 199
Query: 178 CKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVT 237
K G ++N RG +VD ALL L G LDV+ EP + E + I T
Sbjct: 200 LKPGAILINACRGPVVDNAALLARLNAGQPLSVVLDVWEGEPDLNVALLEAVD----IGT 255
Query: 238 PHLGASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNAPAL 281
H+ T E + R ++ E + A Q +++ +L AP
Sbjct: 256 SHIAGYTLEGKARGTTQVFEAYSAFIGRE-QRVALETLLPAPEF 298
>pdb|1XDW|A Chain A, Nad+-Dependent (R)-2-Hydroxyglutarate Dehydrogenase From
Acidaminococcus Fermentans
Length = 331
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 77/278 (27%), Positives = 132/278 (47%), Gaps = 29/278 (10%)
Query: 2 YDGLVVRSD---TKVTAEVLQASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFIS 58
+D +++R + K ++ + ++ + G D+ID A G + P + +
Sbjct: 46 FDAVILRGNCFANKQNLDIYKKLGVKYILTRTAGTDHIDKEYAKELGFPMAFVPRYSPNA 105
Query: 59 ACELTCSLISALSRNVPQGCQ--SLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALR 116
EL + L R+ + K K D +++ E+ T+ V+GLGRIGR A
Sbjct: 106 IAELAVTQAMMLLRHTAYTTSRTAKKNFKVDAFMFS-KEVRNCTVGVVGLGRIGRVAAQI 164
Query: 117 MQAFGMKVIGFD--PMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEV 174
G VIG D + +ED + L+++ +D IT+H P I + ++ +
Sbjct: 165 FHGMGATVIGEDVFEIKGIEDYC----TQVSLDEVLEKSDIITIHAPYIKENGAVVTRDF 220
Query: 175 LKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEP--------------P 220
LKK K G +VN ARG +VD A++++++ G GG DV E P
Sbjct: 221 LKKMKDGAILVNCARGQLVDTEAVIEAVESGKLGGYGCDVLDGEASVFGKDLEGQKLENP 280
Query: 221 KSEQTFELIKHPKVIVTPHLGASTKEAQIRVAVEIAEQ 258
E+ +L +P+V++TPHLG+ T EA ++ VE++ Q
Sbjct: 281 LFEKLVDL--YPRVLITPHLGSYTDEA-VKNMVEVSYQ 315
>pdb|3HG7|A Chain A, Crystal Structure Of D-Isomer Specific 2-Hydroxyacid
Dehydrogenase Family Protein From Aeromonas Salmonicida
Subsp. Salmonicida A449
Length = 324
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 102/222 (45%), Gaps = 7/222 (3%)
Query: 19 QASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGC 78
+A+ L GVD + L A R+ + N G E + +L R +P
Sbjct: 64 KANKLSWFQSTYAGVD-VLLDARCRRDYQLTNVRGIFGPLMSEYVFGHLLSLMRQLPLYR 122
Query: 79 QSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAK 138
+ K+ W Y G L G+TL +LG G IG+ +A + FGMKV+G E A
Sbjct: 123 EQQKQRLWQSHPYQG--LKGRTLLILGTGSIGQHIAHTGKHFGMKVLGVS-RSGRERAGF 179
Query: 139 LNIASL-GLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENA 197
+ L L + AD I P +T +L A + CK G + NV RG ++E
Sbjct: 180 DQVYQLPALNKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAINEGD 239
Query: 198 LLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPH 239
LL +L+ G G A LDVF +EP ++ L P +I+TPH
Sbjct: 240 LLTALRTGKLGMAVLDVFEQEPLPADSP--LWGQPNLIITPH 279
>pdb|3EVT|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From
Lactobacillus Plantarum
Length = 324
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 72/238 (30%), Positives = 116/238 (48%), Gaps = 14/238 (5%)
Query: 21 SNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQS 80
+ L+ V GVD + L A GV+V N G I A ++ S+++A+ +V +G +
Sbjct: 60 NQLKFVQVISAGVDYLPLKALQAAGVVVANTSG---IHADAISESVLAAM-LSVVRGYHA 115
Query: 81 L---KEG--KWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVED 135
+ G +W + T T L G+ L + G G+IG+ +A + A GM VIG + D
Sbjct: 116 AWLNQRGARQWALPMTTST-LTGQQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPAD 174
Query: 136 AAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDE 195
+A D A++I PL P T +L + E+ ++ K+ ++N+ RG VD
Sbjct: 175 HFHETVAFTATADALATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDT 234
Query: 196 NALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIRVAV 253
AL+ +L AALDV EP ++ L + V++TPH+ S + A R V
Sbjct: 235 TALMTALDHHQLSMAALDVTEPEPLPTDH--PLWQRDDVLITPHI--SGQIAHFRATV 288
>pdb|3KBO|A Chain A, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3KBO|B Chain B, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3KBO|C Chain C, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3KBO|D Chain D, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3PP8|A Chain A, 2.1 Angstrom Crystal Structure Of Putative Oxidoreductase
(Ycdw) From Salmonella Typhimurium
Length = 315
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 82/161 (50%), Gaps = 11/161 (6%)
Query: 91 YTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIW 150
YT E ++ + G G +G +VA +QA+G + + + + +G E++
Sbjct: 135 YTREEF---SVGIXGAGVLGAKVAESLQAWGFPLRCWSRSRKSWPGVE---SYVGREELR 188
Query: 151 PLADYITVHTPLIP---QTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHC 207
+ V L+P QT +IN+E+L + G V+N+ARG V E LL +L G
Sbjct: 189 AFLNQTRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAALDSGKL 248
Query: 208 GGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQ 248
GA LDVF +EP E L +HP+V TPH+ A T+ A+
Sbjct: 249 KGAXLDVFSQEPLPQESP--LWRHPRVAXTPHIAAVTRPAE 287
>pdb|3GVX|A Chain A, Crystal Structure Of Glycerate Dehydrogenase Related
Protein From Thermoplasma Acidophilum
pdb|3GVX|B Chain B, Crystal Structure Of Glycerate Dehydrogenase Related
Protein From Thermoplasma Acidophilum
Length = 290
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 66/225 (29%), Positives = 111/225 (49%), Gaps = 11/225 (4%)
Query: 32 GVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLY 91
GVD+ID+ VL NA G IS E +L+ A ++N+ + + K G + +
Sbjct: 59 GVDHIDVNGIPENVVLCSNA-GAYSISVAEHAFALLLAHAKNILENNELXKAGIFRQS-- 115
Query: 92 TGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWP 151
T LYGK L +LG G IGR VA +AFG +VI + SV+ +++ S D++
Sbjct: 116 PTTLLYGKALGILGYGGIGRRVAHLAKAFGXRVIAY-TRSSVDQ--NVDVISESPADLFR 172
Query: 152 LADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAA 211
+D++ + PL +T+ +N+ +L +K + +VNVAR +V + + LK
Sbjct: 173 QSDFVLIAIPLTDKTRGXVNSRLLANARKNLTIVNVARADVVSKPDXIGFLKERSDVWYL 232
Query: 212 LDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIRVAVEIA 256
DV+ EP +E I++PH+ +A+++A
Sbjct: 233 SDVWWNEPEITETNLR-----NAILSPHVAGGXSGEIXDIAIQLA 272
>pdb|2O4C|A Chain A, Crystal Structure Of D-erythronate-4-phosphate
Dehydrogenase Complexed With Nad
pdb|2O4C|B Chain B, Crystal Structure Of D-erythronate-4-phosphate
Dehydrogenase Complexed With Nad
Length = 380
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 78/284 (27%), Positives = 127/284 (44%), Gaps = 30/284 (10%)
Query: 3 DGLVVRSDTKVTAEVLQASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACEL 62
D L+VRS T+V+ L S ++ VG G D++DL G+ +APG N +
Sbjct: 39 DVLLVRSVTEVSRAALAGSPVRFVGTCTIGTDHLDLDYFAEAGIAWSSAPGCNARGVVDY 98
Query: 63 TCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGM 122
+ A++ G +L +T V+G G++G + ++ G
Sbjct: 99 VLGCLLAMAE------------------VRGADLAERTYGVVGAGQVGGRLVEVLRGLGW 140
Query: 123 KVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQ----TKNLINAEVLKKC 178
KV+ DP A + + + LE + AD I++HTPL T++L++ L
Sbjct: 141 KVLVCDPP---RQAREPDGEFVSLERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLAAL 197
Query: 179 KKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTP 238
+ G +VN +RG +VD AL L+ G ALDV+ EP Q + +I TP
Sbjct: 198 RPGTWLVNASRGAVVDNQALRRLLEGGADLEVALDVWEGEP----QADPELAARCLIATP 253
Query: 239 HLGASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNAPALA 282
H+ + E ++R +I + + A + S+Q VL LA
Sbjct: 254 HIAGYSLEGKLRGTAQIYQAYCAWRGIA-ERVSLQDVLPETWLA 296
>pdb|4HY3|A Chain A, Crystal Structure Of A Phosphoglycerate Oxidoreductase
From Rhizobium Etli
pdb|4HY3|B Chain B, Crystal Structure Of A Phosphoglycerate Oxidoreductase
From Rhizobium Etli
pdb|4HY3|C Chain C, Crystal Structure Of A Phosphoglycerate Oxidoreductase
From Rhizobium Etli
pdb|4HY3|D Chain D, Crystal Structure Of A Phosphoglycerate Oxidoreductase
From Rhizobium Etli
Length = 365
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 74/163 (45%), Gaps = 4/163 (2%)
Query: 60 CELTCSLISALSRNVPQGCQSLKEGK--WDRKLYTGTELY-GKTLAVLGLGRIGREVALR 116
E+ AL+R + + +EG W + L G + ++G G +G+ +
Sbjct: 135 AEIGLGFALALARGIVDADIAFQEGTELWGGEGNASARLIAGSEIGIVGFGDLGKALRRV 194
Query: 117 MQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLK 176
+ F ++ FDP + + + LED+ +D+I V + + K + AE
Sbjct: 195 LSGFRARIRVFDPWLPRSXLEENGVEPASLEDVLTKSDFIFVVAAVTSENKRFLGAEAFS 254
Query: 177 KCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEP 219
++G + ++R +VD +AL ++ GH AA DV+ EEP
Sbjct: 255 SXRRGAAFILLSRADVVDFDALXAAVSSGHI-VAASDVYPEEP 296
>pdb|1QP8|A Chain A, Crystal Structure Of A Putative Formate Dehydrogenase From
Pyrobaculum Aerophilum
pdb|1QP8|B Chain B, Crystal Structure Of A Putative Formate Dehydrogenase From
Pyrobaculum Aerophilum
Length = 303
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 99/231 (42%), Gaps = 12/231 (5%)
Query: 11 TKVTAEVL-QASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISA 69
+++TAE L + L+ + G+D++ + + NA G N + E +L+ A
Sbjct: 38 SRITAEELAKXPRLKFIQVVTAGLDHLPWESIPPHVTVAGNA-GSNADAVAEFALALLLA 96
Query: 70 LSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDP 129
+ + Q + K G + R + + G+ +AVLGLG IG V + A G +V GF
Sbjct: 97 PYKRIIQYGEKXKRGDYGRDVEIPL-IQGEKVAVLGLGEIGTRVGKILAALGAQVRGFS- 154
Query: 130 MVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVAR 189
E + + LE+ A PL T+ L+ + L + VNV R
Sbjct: 155 RTPKEGPWRFTNS---LEEALREARAAVCALPLNKHTRGLVKYQHLALXAEDAVFVNVGR 211
Query: 190 GGIVDENALLDSLKCGHCGGAALDVFC--EEPPKSEQTFELIKHPKVIVTP 238
++D + +L LK A DV+ + K + F L P V+ TP
Sbjct: 212 AEVLDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFFSL---PNVVATP 259
>pdb|3D4O|A Chain A, Crystal Structure Of Dipicolinate Synthase Subunit A
(Np_243269.1) From Bacillus Halodurans At 2.10 A
Resolution
pdb|3D4O|B Chain B, Crystal Structure Of Dipicolinate Synthase Subunit A
(Np_243269.1) From Bacillus Halodurans At 2.10 A
Resolution
pdb|3D4O|C Chain C, Crystal Structure Of Dipicolinate Synthase Subunit A
(Np_243269.1) From Bacillus Halodurans At 2.10 A
Resolution
pdb|3D4O|D Chain D, Crystal Structure Of Dipicolinate Synthase Subunit A
(Np_243269.1) From Bacillus Halodurans At 2.10 A
Resolution
Length = 293
Score = 35.4 bits (80), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 91 YTGTELYGKTLAVLGLGRIGREVALRMQAFGMKV 124
+T ++G +AVLGLGR+G VA + A G KV
Sbjct: 148 HTDFTIHGANVAVLGLGRVGXSVARKFAALGAKV 181
>pdb|1V9L|A Chain A, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
pdb|1V9L|B Chain B, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
pdb|1V9L|C Chain C, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
pdb|1V9L|D Chain D, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
pdb|1V9L|E Chain E, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
pdb|1V9L|F Chain F, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
Length = 421
Score = 34.3 bits (77), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
Query: 88 RKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVI 125
+KL+ G E GKT+A+ G+G +GR A ++ G KVI
Sbjct: 202 KKLWGGIE--GKTVAIQGMGNVGRWTAYWLEKMGAKVI 237
>pdb|1KJ8|A Chain A, Crystal Structure Of Purt-Encoded Glycinamide
Ribonucleotide Transformylase In Complex With Mg-Atp And
Gar
pdb|1KJ8|B Chain B, Crystal Structure Of Purt-Encoded Glycinamide
Ribonucleotide Transformylase In Complex With Mg-Atp And
Gar
pdb|1KJ9|A Chain A, Crystal Structure Of Purt-Encoded Glycinamide
Ribonucleotide Transformylase Complexed With Mg-Atp
pdb|1KJ9|B Chain B, Crystal Structure Of Purt-Encoded Glycinamide
Ribonucleotide Transformylase Complexed With Mg-Atp
pdb|1KJI|A Chain A, Crystal Structure Of Glycinamide Ribonucleotide
Transformylase In Complex With Mg-Amppcp
pdb|1KJI|B Chain B, Crystal Structure Of Glycinamide Ribonucleotide
Transformylase In Complex With Mg-Amppcp
pdb|1KJJ|A Chain A, Crystal Structure Of Glycniamide Ribonucleotide
Transformylase In Complex With Mg-Atp-Gamma-S
pdb|1KJJ|B Chain B, Crystal Structure Of Glycniamide Ribonucleotide
Transformylase In Complex With Mg-Atp-Gamma-S
pdb|1KJQ|A Chain A, Crystal Structure Of Glycinamide Ribonucleotide
Transformylase In Complex With Mg-Adp
pdb|1KJQ|B Chain B, Crystal Structure Of Glycinamide Ribonucleotide
Transformylase In Complex With Mg-Adp
Length = 391
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 48/93 (51%), Gaps = 9/93 (9%)
Query: 103 VLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIAS----LGLEDIWPLADYITV 158
+LG G +G+EVA+ Q G++VI D DA +++A + + D L + +
Sbjct: 16 LLGSGELGKEVAIECQRLGVEVIAVD---RYADAPAMHVAHRSHVINMLDGDALRRVVEL 72
Query: 159 HTP--LIPQTKNLINAEVLKKCKKGVRVVNVAR 189
P ++P+ + + +++ ++G+ VV AR
Sbjct: 73 EKPHYIVPEIEAIATDMLIQLEEEGLNVVPCAR 105
>pdb|1EYZ|A Chain A, Structure Of Escherichia Coli Purt-Encoded Glycinamide
Ribonucleotide Transformylase Complexed With Mg And
Amppnp
pdb|1EYZ|B Chain B, Structure Of Escherichia Coli Purt-Encoded Glycinamide
Ribonucleotide Transformylase Complexed With Mg And
Amppnp
pdb|1EZ1|A Chain A, Structure Of Escherichia Coli Purt-Encoded Glycinamide
Ribonucleotide Transformylase Complexed With Mg, Amppnp,
And Gar
pdb|1EZ1|B Chain B, Structure Of Escherichia Coli Purt-Encoded Glycinamide
Ribonucleotide Transformylase Complexed With Mg, Amppnp,
And Gar
Length = 392
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 48/93 (51%), Gaps = 9/93 (9%)
Query: 103 VLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIAS----LGLEDIWPLADYITV 158
+LG G +G+EVA+ Q G++VI D DA +++A + + D L + +
Sbjct: 17 LLGSGELGKEVAIECQRLGVEVIAVD---RYADAPAMHVAHRSHVINMLDGDALRRVVEL 73
Query: 159 HTP--LIPQTKNLINAEVLKKCKKGVRVVNVAR 189
P ++P+ + + +++ ++G+ VV AR
Sbjct: 74 EKPHYIVPEIEAIATDMLIQLEEEGLNVVPCAR 106
>pdb|3OND|A Chain A, Crystal Structure Of Lupinus Luteus
S-Adenosyl-L-Homocysteine Hydrolase In Complex With
Adenosine
pdb|3OND|B Chain B, Crystal Structure Of Lupinus Luteus
S-Adenosyl-L-Homocysteine Hydrolase In Complex With
Adenosine
pdb|3ONE|A Chain A, Crystal Structure Of Lupinus Luteus
S-Adenosyl-L-Homocysteine Hydrolase In Complex With
Adenine
pdb|3ONE|B Chain B, Crystal Structure Of Lupinus Luteus
S-Adenosyl-L-Homocysteine Hydrolase In Complex With
Adenine
pdb|3ONF|A Chain A, Crystal Structure Of Lupinus Luteus
S-Adenosyl-L-Homocysteine Hydrolase In Complex With
Cordycepin
pdb|3ONF|B Chain B, Crystal Structure Of Lupinus Luteus
S-Adenosyl-L-Homocysteine Hydrolase In Complex With
Cordycepin
Length = 488
Score = 31.2 bits (69), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 7/94 (7%)
Query: 98 GKTLAVLGLGRIGREVALRMQAFGMKVI--GFDPMVSVEDAAKLNIASLGLEDIWPLADY 155
GK V G G +G+ A ++ G +VI DP+ +++ A + L LED+ AD
Sbjct: 265 GKVAVVAGYGDVGKGCAAALKQAGARVIVTEIDPICALQ-ATMEGLQVLTLEDVVSEADI 323
Query: 156 ITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVAR 189
T K++I + +KK K V N+
Sbjct: 324 FVTTT----GNKDIIMLDHMKKMKNNAIVCNIGH 353
>pdb|3G1U|A Chain A, Crystal Structure Of Leishmania Major S-
Adenosylhomocysteine Hydrolase
pdb|3G1U|B Chain B, Crystal Structure Of Leishmania Major S-
Adenosylhomocysteine Hydrolase
pdb|3G1U|C Chain C, Crystal Structure Of Leishmania Major S-
Adenosylhomocysteine Hydrolase
pdb|3G1U|D Chain D, Crystal Structure Of Leishmania Major S-
Adenosylhomocysteine Hydrolase
Length = 437
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
Query: 54 GNF-ISACELTCSLISALSRNVPQGC-QSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGR 111
GN ISA + S+ + N+ GC +SL +G K T + GKT V G G +G+
Sbjct: 170 GNLPISAINVNDSVTKSKFDNL-YGCRESLVDGI---KRATDVMIAGKTCCVCGYGDVGK 225
Query: 112 EVALRMQAFGMKVI 125
A ++AFG +V+
Sbjct: 226 GCAAALRAFGARVV 239
>pdb|3AOE|E Chain E, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
pdb|3AOE|F Chain F, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
pdb|3AOE|C Chain C, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
pdb|3AOE|D Chain D, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
Length = 419
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 93 GTELYGKTLAVLGLGRIGREVALRMQAFGMKVI 125
G +L G + V GLG++G VAL + GM+V+
Sbjct: 213 GLDLRGARVVVQGLGQVGAAVALHAERLGMRVV 245
>pdb|1A9X|A Chain A, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|C Chain C, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|E Chain E, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|G Chain G, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
Length = 1073
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 8/59 (13%)
Query: 103 VLGLGRIGREVALRMQAFGMKV--IGFDPMVSVEDAAKL-----NIASLGLEDIWPLAD 154
V+ +GR +E +L+ G++V GFDP VS++D L + G + IW +AD
Sbjct: 384 VMAIGRTQQE-SLQKALRGLEVGATGFDPKVSLDDPEALTKIRRELKDAGADRIWYIAD 441
>pdb|1CE8|A Chain A, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|C Chain C, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|E Chain E, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|G Chain G, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1M6V|A Chain A, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|C Chain C, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|E Chain E, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|G Chain G, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
Length = 1073
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 8/59 (13%)
Query: 103 VLGLGRIGREVALRMQAFGMKV--IGFDPMVSVEDAAKL-----NIASLGLEDIWPLAD 154
V+ +GR +E +L+ G++V GFDP VS++D L + G + IW +AD
Sbjct: 384 VMAIGRTQQE-SLQKALRGLEVGATGFDPKVSLDDPEALTKIRRELKDAGADRIWYIAD 441
>pdb|2RIR|A Chain A, Crystal Structure Of Dipicolinate Synthase, A Chain, From
Bacillus Subtilis
pdb|2RIR|B Chain B, Crystal Structure Of Dipicolinate Synthase, A Chain, From
Bacillus Subtilis
pdb|2RIR|C Chain C, Crystal Structure Of Dipicolinate Synthase, A Chain, From
Bacillus Subtilis
pdb|2RIR|D Chain D, Crystal Structure Of Dipicolinate Synthase, A Chain, From
Bacillus Subtilis
pdb|2RIR|E Chain E, Crystal Structure Of Dipicolinate Synthase, A Chain, From
Bacillus Subtilis
pdb|2RIR|F Chain F, Crystal Structure Of Dipicolinate Synthase, A Chain, From
Bacillus Subtilis
pdb|2RIR|G Chain G, Crystal Structure Of Dipicolinate Synthase, A Chain, From
Bacillus Subtilis
pdb|2RIR|H Chain H, Crystal Structure Of Dipicolinate Synthase, A Chain, From
Bacillus Subtilis
Length = 300
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 91 YTGTELYGKTLAVLGLGRIGREVALRMQAFGMKV 124
+T ++G +AVLGLGR G +A A G V
Sbjct: 150 HTDYTIHGSQVAVLGLGRTGXTIARTFAALGANV 183
>pdb|1JDB|B Chain B, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|E Chain E, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|H Chain H, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|K Chain K, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1BXR|A Chain A, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|C Chain C, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|E Chain E, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|G Chain G, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1C30|A Chain A, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|C Chain C, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|E Chain E, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|G Chain G, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C3O|A Chain A, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|C Chain C, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|E Chain E, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|G Chain G, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1CS0|A Chain A, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1CS0|C Chain C, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1CS0|E Chain E, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1CS0|G Chain G, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1KEE|A Chain A, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|C Chain C, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|E Chain E, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|G Chain G, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1T36|A Chain A, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
pdb|1T36|C Chain C, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
pdb|1T36|E Chain E, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
pdb|1T36|G Chain G, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
Length = 1073
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 8/59 (13%)
Query: 103 VLGLGRIGREVALRMQAFGMKV--IGFDPMVSVEDAAKL-----NIASLGLEDIWPLAD 154
V+ +GR +E +L+ G++V GFDP VS++D L + G + IW +AD
Sbjct: 384 VMAIGRTQQE-SLQKALRGLEVGATGFDPKVSLDDPEALTKIRRELKDAGADRIWYIAD 441
>pdb|3A5C|A Chain A, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|B Chain B, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|C Chain C, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|I Chain I, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|J Chain J, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|K Chain K, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|A Chain A, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|B Chain B, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|C Chain C, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|I Chain I, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|J Chain J, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|K Chain K, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3J0J|A Chain A, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
pdb|3J0J|B Chain B, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
pdb|3J0J|C Chain C, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
Length = 578
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 60/155 (38%), Gaps = 34/155 (21%)
Query: 128 DPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNV 187
+P+V +ED +L + WP+ V L P T L +L + V
Sbjct: 170 EPVVVLEDGTELK-----MYHTWPVRRARPVQRKLDPNTPFLTGMRILDV------LFPV 218
Query: 188 ARGGI------------VDENALLD--------SLKCGHCGGAALDVFCEEPPKSE-QTF 226
A GG V + +L + CG G DV E P ++ +T
Sbjct: 219 AMGGTAAIPGPFGSGKTVTQQSLAKWSNADVVVYVGCGERGNEMTDVLVEFPELTDPKTG 278
Query: 227 ELIKHPKVIV--TPHLGASTKEAQIRVAVEIAEQF 259
+ H V++ T ++ + +EA I V V IAE F
Sbjct: 279 GPLMHRTVLIANTSNMPVAAREASIYVGVTIAEYF 313
>pdb|1BVU|A Chain A, Glutamate Dehydrogenase From Thermococcus Litoralis
pdb|1BVU|B Chain B, Glutamate Dehydrogenase From Thermococcus Litoralis
pdb|1BVU|C Chain C, Glutamate Dehydrogenase From Thermococcus Litoralis
pdb|1BVU|D Chain D, Glutamate Dehydrogenase From Thermococcus Litoralis
pdb|1BVU|E Chain E, Glutamate Dehydrogenase From Thermococcus Litoralis
pdb|1BVU|F Chain F, Glutamate Dehydrogenase From Thermococcus Litoralis
Length = 418
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 93 GTELYGKTLAVLGLGRIGREVALRM-QAFGMKVI 125
G +L GKT+A+ G G G +A M + +GMKV+
Sbjct: 206 GMDLKGKTIAIQGYGNAGYYMAKIMSEEYGMKVV 239
>pdb|4AAJ|A Chain A, Structure Of N-(5'-Phosphoribosyl)anthranilate Isomerase
From Pyrococcus Furiosus
Length = 228
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 27/61 (44%)
Query: 153 ADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAAL 212
A YI VH+ +PQT + + E K RV +++ D N LL + + L
Sbjct: 93 AQYIQVHSNALPQTIDTLKKEFGVFVMKAFRVPTISKNPEEDANRLLSEISRYNADMVLL 152
Query: 213 D 213
D
Sbjct: 153 D 153
>pdb|2CZG|A Chain A, Crystal Structure Of Probable Phosphoribosylglycinamide
Formyl Transferase (Ph0318) From Pyrococcus Horikoshii
Ot3
pdb|2CZG|B Chain B, Crystal Structure Of Probable Phosphoribosylglycinamide
Formyl Transferase (Ph0318) From Pyrococcus Horikoshii
Ot3
pdb|2DWC|A Chain A, Crystal Structure Of Probable Phosphoribosylglycinamide
Formyl Transferase From Pyrococcus Horikoshii Ot3
Complexed With Adp
pdb|2DWC|B Chain B, Crystal Structure Of Probable Phosphoribosylglycinamide
Formyl Transferase From Pyrococcus Horikoshii Ot3
Complexed With Adp
Length = 433
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 89 KLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFD 128
+L T T + + +LG G +G+E+A+ Q G++V+ D
Sbjct: 10 ELGTATTDSAQKILLLGSGELGKEIAIEAQRLGVEVVAVD 49
>pdb|1OHV|A Chain A, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHV|B Chain B, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHV|C Chain C, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHV|D Chain D, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHW|A Chain A, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHW|B Chain B, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHW|C Chain C, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHW|D Chain D, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHY|A Chain A, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
pdb|1OHY|B Chain B, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
pdb|1OHY|C Chain C, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
pdb|1OHY|D Chain D, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
Length = 472
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 27/54 (50%)
Query: 147 EDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLD 200
E+ P A Y +T L +KNL+ AEV+ K+ + N A G V LLD
Sbjct: 340 EEFRPNAPYRIFNTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLLD 393
>pdb|3OJL|A Chain A, Native Structure Of The Udp-N-Acetyl-Mannosamine
Dehydrogenase Cap5o From Staphylococcus Aureus
pdb|3OJL|B Chain B, Native Structure Of The Udp-N-Acetyl-Mannosamine
Dehydrogenase Cap5o From Staphylococcus Aureus
pdb|3OJO|A Chain A, Derivative Structure Of The Udp-N-Acetyl-Mannosamine
Dehydrogenase Cap5o From S. Aureus
pdb|3OJO|B Chain B, Derivative Structure Of The Udp-N-Acetyl-Mannosamine
Dehydrogenase Cap5o From S. Aureus
Length = 431
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 98 GKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDA---AKLNIASLGLEDIW 150
G L V+GLG IG ++ G+ V+G D D +++I GL++++
Sbjct: 11 GSKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQTIDKLQNGQISIEEPGLQEVY 66
>pdb|3H9U|A Chain A, S-Adenosyl Homocysteine Hydrolase (Sahh) From Trypanosoma
Brucei
pdb|3H9U|B Chain B, S-Adenosyl Homocysteine Hydrolase (Sahh) From Trypanosoma
Brucei
pdb|3H9U|C Chain C, S-Adenosyl Homocysteine Hydrolase (Sahh) From Trypanosoma
Brucei
pdb|3H9U|D Chain D, S-Adenosyl Homocysteine Hydrolase (Sahh) From Trypanosoma
Brucei
Length = 436
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 7/76 (9%)
Query: 77 GC-QSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVI--GFDPMVSV 133
GC +SL +G K T + GKT V G G +G+ A ++ FG +V+ DP+ ++
Sbjct: 192 GCRESLVDGI---KRATDVMIAGKTACVCGYGDVGKGCAAALRGFGARVVVTEVDPINAL 248
Query: 134 EDAAKLNIASLGLEDI 149
+ AA L +ED+
Sbjct: 249 Q-AAMEGYQVLLVEDV 263
>pdb|3VTF|A Chain A, Structure Of A Udp-Glucose Dehydrogenase From The
Hyperthermophilic Archaeon Pyrobaculum Islandicum
Length = 444
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 100 TLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVED---AAKLNIASLGLED 148
+L+VLGLG +G A+ G +V+G+D S+ + A + +I GLE+
Sbjct: 23 SLSVLGLGYVGVVHAVGFALLGHRVVGYDVNPSIVERLRAGRPHIYEPGLEE 74
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,644,743
Number of Sequences: 62578
Number of extensions: 336983
Number of successful extensions: 1082
Number of sequences better than 100.0: 100
Number of HSP's better than 100.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 866
Number of HSP's gapped (non-prelim): 106
length of query: 333
length of database: 14,973,337
effective HSP length: 99
effective length of query: 234
effective length of database: 8,778,115
effective search space: 2054078910
effective search space used: 2054078910
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)