Query psy6348
Match_columns 333
No_of_seqs 331 out of 2563
Neff 6.9
Searched_HMMs 46136
Date Sat Aug 17 00:07:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6348.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6348hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0068|consensus 100.0 1.4E-83 3.1E-88 601.1 26.0 327 1-332 47-386 (406)
2 COG0111 SerA Phosphoglycerate 100.0 3.7E-75 8.1E-80 558.4 28.3 274 1-283 45-320 (324)
3 TIGR01327 PGDH D-3-phosphoglyc 100.0 2.6E-74 5.6E-79 585.9 30.7 303 1-310 40-344 (525)
4 PRK13581 D-3-phosphoglycerate 100.0 3.3E-73 7.1E-78 577.9 29.9 303 1-310 42-345 (526)
5 PRK15409 bifunctional glyoxyla 100.0 1.3E-70 2.9E-75 527.9 28.5 271 1-278 45-320 (323)
6 COG1052 LdhA Lactate dehydroge 100.0 1.8E-69 3.9E-74 518.8 27.7 272 1-278 44-323 (324)
7 PRK11790 D-3-phosphoglycerate 100.0 2.8E-68 6.2E-73 526.4 30.2 285 1-292 53-350 (409)
8 PRK13243 glyoxylate reductase; 100.0 5.6E-68 1.2E-72 512.0 28.2 274 1-281 45-326 (333)
9 PRK08410 2-hydroxyacid dehydro 100.0 6.3E-68 1.4E-72 507.3 26.6 259 1-266 42-310 (311)
10 PRK06487 glycerate dehydrogena 100.0 9.5E-68 2.1E-72 507.2 27.5 264 1-277 45-317 (317)
11 PLN02306 hydroxypyruvate reduc 100.0 2.3E-66 5E-71 508.2 28.9 272 1-279 62-356 (386)
12 PRK06932 glycerate dehydrogena 100.0 2.9E-66 6.2E-71 496.3 26.7 259 1-266 44-313 (314)
13 PLN03139 formate dehydrogenase 100.0 1.6E-65 3.6E-70 501.2 29.4 273 1-277 97-376 (386)
14 PRK07574 formate dehydrogenase 100.0 2.9E-65 6.3E-70 499.7 28.3 264 1-266 90-360 (385)
15 PLN02928 oxidoreductase family 100.0 1.3E-63 2.8E-68 483.9 28.3 261 1-266 61-338 (347)
16 PRK12480 D-lactate dehydrogena 100.0 2.2E-62 4.8E-67 472.3 26.7 270 1-277 45-330 (330)
17 PRK08605 D-lactate dehydrogena 100.0 1.2E-61 2.6E-66 467.8 27.1 271 1-277 45-332 (332)
18 PRK15438 erythronate-4-phospha 100.0 7.3E-59 1.6E-63 453.0 29.3 239 1-265 37-280 (378)
19 PRK15469 ghrA bifunctional gly 100.0 3.8E-59 8.2E-64 446.6 25.3 264 1-279 38-309 (312)
20 PRK00257 erythronate-4-phospha 100.0 2.7E-58 5.9E-63 450.0 29.6 241 1-266 37-281 (381)
21 PRK06436 glycerate dehydrogena 100.0 2.9E-58 6.3E-63 438.5 25.9 244 20-281 46-293 (303)
22 KOG0069|consensus 100.0 3.9E-58 8.5E-63 437.5 24.1 254 11-267 71-329 (336)
23 PF02826 2-Hacid_dh_C: D-isome 100.0 2.2E-49 4.8E-54 350.7 14.5 176 64-241 1-178 (178)
24 KOG0067|consensus 100.0 2.6E-35 5.5E-40 279.2 11.2 262 11-282 83-354 (435)
25 PTZ00075 Adenosylhomocysteinas 99.9 2.6E-22 5.6E-27 200.0 16.2 169 29-222 198-368 (476)
26 TIGR02853 spore_dpaA dipicolin 99.8 4.7E-21 1E-25 181.8 12.0 158 5-190 74-242 (287)
27 PF00389 2-Hacid_dh: D-isomer 99.8 2.6E-18 5.6E-23 144.7 10.6 63 1-63 38-101 (133)
28 PRK08306 dipicolinate synthase 99.7 4.7E-16 1E-20 148.2 14.4 151 12-190 82-243 (296)
29 PLN02494 adenosylhomocysteinas 99.7 1.6E-16 3.6E-21 158.3 10.0 121 94-219 250-374 (477)
30 PRK13403 ketol-acid reductoiso 99.6 2E-15 4.4E-20 144.1 10.1 92 94-186 12-104 (335)
31 TIGR00936 ahcY adenosylhomocys 99.6 6.1E-15 1.3E-19 145.6 11.3 120 94-217 191-312 (406)
32 PRK05476 S-adenosyl-L-homocyst 99.5 5.5E-14 1.2E-18 139.7 9.7 153 29-200 156-312 (425)
33 PF03446 NAD_binding_2: NAD bi 99.5 6.1E-14 1.3E-18 122.3 8.3 114 99-214 2-118 (163)
34 COG2084 MmsB 3-hydroxyisobutyr 99.5 2.3E-13 5.1E-18 128.5 10.8 113 99-213 1-118 (286)
35 PRK11559 garR tartronate semia 99.4 2.1E-12 4.6E-17 122.5 11.0 121 99-219 3-127 (296)
36 PF00670 AdoHcyase_NAD: S-aden 99.4 1.7E-12 3.7E-17 112.8 9.3 104 93-200 18-123 (162)
37 TIGR01505 tartro_sem_red 2-hyd 99.4 2.5E-12 5.4E-17 121.9 10.9 109 100-208 1-113 (291)
38 PRK15461 NADH-dependent gamma- 99.3 5.7E-12 1.2E-16 120.1 11.2 114 99-214 2-119 (296)
39 PRK12490 6-phosphogluconate de 99.3 8.7E-12 1.9E-16 118.9 11.1 111 100-213 2-117 (299)
40 PRK05479 ketol-acid reductoiso 99.3 1.1E-11 2.4E-16 119.5 9.9 95 94-190 13-109 (330)
41 cd00401 AdoHcyase S-adenosyl-L 99.3 2.5E-11 5.3E-16 120.5 11.0 104 93-200 197-302 (413)
42 PLN02712 arogenate dehydrogena 99.3 3E-11 6.5E-16 126.7 12.3 114 91-205 362-477 (667)
43 PRK09599 6-phosphogluconate de 99.3 4.3E-11 9.3E-16 114.2 11.6 112 100-214 2-118 (301)
44 PLN02256 arogenate dehydrogena 99.2 2.7E-10 5.8E-15 109.2 16.1 108 96-204 34-143 (304)
45 PRK15059 tartronate semialdehy 99.2 6.1E-11 1.3E-15 112.9 10.8 112 100-213 2-116 (292)
46 PLN02350 phosphogluconate dehy 99.2 1E-10 2.2E-15 118.5 11.4 119 100-219 8-138 (493)
47 TIGR00872 gnd_rel 6-phosphoglu 99.1 4.4E-10 9.6E-15 107.2 11.9 108 99-208 1-113 (298)
48 PF07991 IlvN: Acetohydroxy ac 99.1 2.1E-10 4.5E-15 99.5 8.2 93 96-190 2-96 (165)
49 TIGR00465 ilvC ketol-acid redu 99.1 3.9E-10 8.4E-15 108.5 10.4 95 96-192 1-97 (314)
50 PLN02858 fructose-bisphosphate 99.1 4.7E-10 1E-14 125.7 12.0 118 97-214 3-124 (1378)
51 KOG0409|consensus 99.1 3E-10 6.6E-15 106.8 8.8 115 97-213 34-153 (327)
52 TIGR01692 HIBADH 3-hydroxyisob 99.1 5.5E-10 1.2E-14 105.9 9.2 109 103-213 1-113 (288)
53 PRK05225 ketol-acid reductoiso 99.1 2.1E-10 4.7E-15 113.8 6.5 103 85-190 21-132 (487)
54 PTZ00142 6-phosphogluconate de 99.0 9.6E-10 2.1E-14 111.1 11.1 119 99-218 2-131 (470)
55 PLN02858 fructose-bisphosphate 99.0 8.1E-10 1.8E-14 123.9 11.4 115 98-214 324-444 (1378)
56 PRK08655 prephenate dehydrogen 99.0 3.5E-09 7.7E-14 106.3 14.7 133 99-240 1-137 (437)
57 PRK07417 arogenate dehydrogena 99.0 6.2E-09 1.3E-13 98.3 14.2 138 99-242 1-143 (279)
58 PLN02712 arogenate dehydrogena 99.0 1.4E-09 3E-14 114.3 10.7 108 96-204 50-159 (667)
59 PRK07502 cyclohexadienyl dehyd 99.0 1E-08 2.2E-13 98.1 15.1 147 98-248 6-160 (307)
60 TIGR00873 gnd 6-phosphoglucona 99.0 3.3E-09 7.1E-14 107.2 11.1 117 100-217 1-127 (467)
61 PLN02545 3-hydroxybutyryl-CoA 98.9 1.2E-08 2.6E-13 97.0 13.6 102 99-203 5-132 (295)
62 PRK07066 3-hydroxybutyryl-CoA 98.9 1.1E-08 2.4E-13 98.8 13.4 116 99-217 8-145 (321)
63 PRK11064 wecC UDP-N-acetyl-D-m 98.9 1.3E-08 2.7E-13 101.7 13.9 106 99-204 4-135 (415)
64 PRK09260 3-hydroxybutyryl-CoA 98.9 2.1E-08 4.5E-13 95.0 14.5 113 99-215 2-141 (288)
65 PRK15182 Vi polysaccharide bio 98.9 1.1E-08 2.3E-13 102.5 12.8 136 99-236 7-173 (425)
66 PF03807 F420_oxidored: NADP o 98.9 2.4E-09 5.2E-14 84.5 6.6 88 100-190 1-96 (96)
67 PRK14619 NAD(P)H-dependent gly 98.9 6.1E-09 1.3E-13 99.7 9.8 82 97-191 3-85 (308)
68 COG0287 TyrA Prephenate dehydr 98.9 3E-08 6.5E-13 93.9 14.3 136 98-241 3-146 (279)
69 cd01075 NAD_bind_Leu_Phe_Val_D 98.9 1.7E-08 3.7E-13 91.1 11.5 109 93-208 23-134 (200)
70 COG0499 SAM1 S-adenosylhomocys 98.9 5.8E-09 1.3E-13 100.2 8.5 101 95-199 206-308 (420)
71 PLN02688 pyrroline-5-carboxyla 98.9 1.8E-08 3.9E-13 94.1 11.6 102 99-204 1-109 (266)
72 PRK06545 prephenate dehydrogen 98.9 5.8E-08 1.3E-12 95.1 14.9 139 99-242 1-150 (359)
73 PRK08293 3-hydroxybutyryl-CoA 98.8 1.2E-07 2.7E-12 89.8 16.3 136 99-248 4-166 (287)
74 PRK08507 prephenate dehydrogen 98.8 8.5E-08 1.8E-12 90.3 14.1 98 99-204 1-103 (275)
75 PRK12491 pyrroline-5-carboxyla 98.8 2.7E-08 5.9E-13 93.9 10.6 101 99-203 3-110 (272)
76 PRK08818 prephenate dehydrogen 98.8 8E-08 1.7E-12 94.4 14.0 124 97-239 3-130 (370)
77 PRK11199 tyrA bifunctional cho 98.8 1.4E-07 3E-12 93.0 14.7 123 55-202 66-189 (374)
78 TIGR03026 NDP-sugDHase nucleot 98.8 1.1E-07 2.3E-12 94.7 13.8 137 99-237 1-174 (411)
79 PRK07530 3-hydroxybutyryl-CoA 98.7 2E-07 4.3E-12 88.5 14.5 113 99-216 5-144 (292)
80 PRK14194 bifunctional 5,10-met 98.7 4.4E-08 9.6E-13 93.4 8.8 80 93-191 154-234 (301)
81 cd01065 NAD_bind_Shikimate_DH 98.7 1.1E-07 2.3E-12 81.2 10.3 109 94-207 15-133 (155)
82 PRK05808 3-hydroxybutyryl-CoA 98.7 3.3E-07 7.1E-12 86.6 14.5 114 99-216 4-143 (282)
83 PRK07679 pyrroline-5-carboxyla 98.7 9.3E-08 2E-12 90.3 10.7 104 97-204 2-113 (279)
84 KOG1370|consensus 98.7 4.4E-08 9.6E-13 92.3 7.7 93 95-191 211-304 (434)
85 PRK14806 bifunctional cyclohex 98.7 3.4E-07 7.4E-12 97.4 15.5 137 99-242 4-153 (735)
86 COG1023 Gnd Predicted 6-phosph 98.7 1.7E-07 3.6E-12 85.9 10.8 115 99-216 1-120 (300)
87 PRK15057 UDP-glucose 6-dehydro 98.7 2E-07 4.3E-12 92.4 12.3 128 100-236 2-160 (388)
88 PRK07819 3-hydroxybutyryl-CoA 98.7 5.4E-07 1.2E-11 85.7 14.9 115 99-217 6-147 (286)
89 PRK14618 NAD(P)H-dependent gly 98.7 1.4E-07 3E-12 91.0 10.9 101 98-204 4-123 (328)
90 PF10727 Rossmann-like: Rossma 98.7 4E-08 8.8E-13 82.5 6.2 107 97-207 9-121 (127)
91 PRK06035 3-hydroxyacyl-CoA deh 98.7 7.5E-07 1.6E-11 84.6 15.6 116 99-218 4-148 (291)
92 PRK07531 bifunctional 3-hydrox 98.7 4E-07 8.7E-12 92.9 14.5 104 99-204 5-130 (495)
93 TIGR00518 alaDH alanine dehydr 98.7 7.1E-08 1.5E-12 94.9 8.5 148 96-264 165-325 (370)
94 PRK13302 putative L-aspartate 98.6 1.2E-07 2.5E-12 89.6 9.3 107 97-208 5-118 (271)
95 PRK06129 3-hydroxyacyl-CoA deh 98.6 3.8E-07 8.1E-12 87.4 13.0 104 99-204 3-132 (308)
96 TIGR01724 hmd_rel H2-forming N 98.6 1.9E-07 4.1E-12 89.3 10.5 88 110-198 32-126 (341)
97 PRK08268 3-hydroxy-acyl-CoA de 98.6 1.9E-07 4.1E-12 95.5 11.2 115 99-219 8-150 (507)
98 PRK00094 gpsA NAD(P)H-dependen 98.6 1.3E-07 2.9E-12 90.3 9.4 91 99-191 2-108 (325)
99 TIGR02279 PaaC-3OHAcCoADH 3-hy 98.6 3.9E-07 8.4E-12 93.1 12.7 116 99-219 6-148 (503)
100 COG0059 IlvC Ketol-acid reduct 98.6 1.8E-07 3.8E-12 88.4 8.4 94 95-190 15-110 (338)
101 PRK06130 3-hydroxybutyryl-CoA 98.6 4.1E-07 9E-12 86.9 10.9 104 99-204 5-129 (311)
102 PRK07680 late competence prote 98.5 5.8E-07 1.3E-11 84.6 10.2 100 100-203 2-109 (273)
103 PRK14188 bifunctional 5,10-met 98.5 4.2E-07 9.2E-12 86.7 9.0 80 93-192 153-234 (296)
104 PF02737 3HCDH_N: 3-hydroxyacy 98.5 8.7E-07 1.9E-11 78.7 10.4 113 100-216 1-139 (180)
105 PRK06476 pyrroline-5-carboxyla 98.5 5.2E-07 1.1E-11 84.1 9.0 100 100-205 2-108 (258)
106 cd01080 NAD_bind_m-THF_DH_Cycl 98.5 5.1E-07 1.1E-11 79.4 8.3 90 94-209 40-130 (168)
107 PF01210 NAD_Gly3P_dh_N: NAD-d 98.5 6.1E-07 1.3E-11 77.7 8.1 90 100-191 1-106 (157)
108 PRK08229 2-dehydropantoate 2-r 98.5 1.2E-06 2.7E-11 84.6 11.0 107 99-208 3-126 (341)
109 PRK14189 bifunctional 5,10-met 98.4 5.8E-07 1.3E-11 85.2 8.2 81 93-192 153-234 (285)
110 PRK14179 bifunctional 5,10-met 98.4 8.2E-07 1.8E-11 84.2 8.1 80 93-191 153-233 (284)
111 PRK06928 pyrroline-5-carboxyla 98.4 2.4E-06 5.2E-11 80.7 11.2 101 99-203 2-111 (277)
112 PF01488 Shikimate_DH: Shikima 98.4 6E-07 1.3E-11 75.9 6.1 97 95-194 9-115 (135)
113 PRK09287 6-phosphogluconate de 98.4 1.4E-06 3.1E-11 88.0 9.7 109 109-218 1-119 (459)
114 PRK11880 pyrroline-5-carboxyla 98.4 1.7E-06 3.6E-11 80.8 9.3 99 99-203 3-107 (267)
115 KOG2380|consensus 98.3 8.8E-06 1.9E-10 78.1 12.6 139 98-241 52-192 (480)
116 PRK12557 H(2)-dependent methyl 98.3 4.1E-06 9E-11 81.7 10.7 93 110-203 32-132 (342)
117 COG2085 Predicted dinucleotide 98.3 3.6E-06 7.7E-11 76.2 9.3 89 99-190 2-95 (211)
118 PRK07634 pyrroline-5-carboxyla 98.3 5.8E-06 1.2E-10 76.1 11.0 104 97-205 3-114 (245)
119 COG0677 WecC UDP-N-acetyl-D-ma 98.3 7.5E-06 1.6E-10 80.1 12.1 144 99-249 10-189 (436)
120 PF03721 UDPG_MGDP_dh_N: UDP-g 98.3 1.4E-06 3.1E-11 77.7 6.6 138 99-236 1-171 (185)
121 PRK05472 redox-sensing transcr 98.3 5.1E-07 1.1E-11 82.1 3.8 130 57-204 61-201 (213)
122 cd05191 NAD_bind_amino_acid_DH 98.3 5.5E-06 1.2E-10 64.5 8.7 67 94-188 19-86 (86)
123 PRK13304 L-aspartate dehydroge 98.3 4E-06 8.7E-11 78.9 9.0 104 99-207 2-114 (265)
124 COG0345 ProC Pyrroline-5-carbo 98.2 7.9E-06 1.7E-10 76.9 10.7 97 99-203 2-108 (266)
125 TIGR01915 npdG NADPH-dependent 98.2 4.8E-06 1E-10 75.9 9.1 91 99-192 1-105 (219)
126 PRK14175 bifunctional 5,10-met 98.2 4E-06 8.7E-11 79.6 8.4 80 93-191 153-233 (286)
127 TIGR00561 pntA NAD(P) transhyd 98.2 4.3E-06 9.3E-11 85.3 9.1 93 96-189 162-285 (511)
128 TIGR01035 hemA glutamyl-tRNA r 98.2 3.4E-06 7.4E-11 84.3 7.9 97 95-194 177-283 (417)
129 PRK06522 2-dehydropantoate 2-r 98.2 1.7E-05 3.6E-10 75.0 12.1 107 99-209 1-120 (304)
130 cd05213 NAD_bind_Glutamyl_tRNA 98.2 6.8E-06 1.5E-10 79.0 9.5 93 96-190 176-275 (311)
131 PRK12921 2-dehydropantoate 2-r 98.2 1.3E-05 2.8E-10 76.0 11.2 107 99-208 1-121 (305)
132 cd05311 NAD_bind_2_malic_enz N 98.2 4.1E-05 8.9E-10 70.5 13.7 151 93-262 20-194 (226)
133 PLN02353 probable UDP-glucose 98.1 5.4E-05 1.2E-09 76.9 14.4 135 99-236 2-176 (473)
134 PRK00045 hemA glutamyl-tRNA re 98.1 9.9E-06 2.1E-10 81.1 8.3 92 95-189 179-281 (423)
135 PF02153 PDH: Prephenate dehyd 98.1 5E-05 1.1E-09 71.1 11.9 126 113-241 1-133 (258)
136 PF01262 AlaDh_PNT_C: Alanine 98.0 9E-06 1.9E-10 71.2 6.3 95 94-188 16-139 (168)
137 PTZ00431 pyrroline carboxylate 98.0 2.1E-05 4.6E-10 73.6 8.9 97 98-204 3-104 (260)
138 PRK09424 pntA NAD(P) transhydr 98.0 1.9E-05 4E-10 80.7 8.8 94 96-189 163-286 (509)
139 PRK10792 bifunctional 5,10-met 98.0 2.9E-05 6.2E-10 73.7 9.3 80 93-191 154-234 (285)
140 PF02882 THF_DHG_CYH_C: Tetrah 98.0 2.2E-05 4.7E-10 68.6 7.8 82 92-192 30-112 (160)
141 cd05212 NAD_bind_m-THF_DH_Cycl 98.0 6.1E-05 1.3E-09 64.4 10.1 81 92-191 22-103 (140)
142 PLN00203 glutamyl-tRNA reducta 98.0 1.7E-05 3.8E-10 81.3 7.5 94 95-191 263-372 (519)
143 PRK14192 bifunctional 5,10-met 97.9 3.9E-05 8.4E-10 73.0 9.1 80 93-191 154-234 (283)
144 TIGR01546 GAPDH-II_archae glyc 97.9 2.6E-05 5.7E-10 75.6 8.0 86 101-189 1-109 (333)
145 PRK14176 bifunctional 5,10-met 97.9 3.2E-05 7E-10 73.4 8.0 79 93-190 159-238 (287)
146 PRK14178 bifunctional 5,10-met 97.9 3E-05 6.6E-10 73.4 7.5 80 93-191 147-227 (279)
147 PRK06249 2-dehydropantoate 2-r 97.9 0.00013 2.9E-09 70.0 12.0 110 99-212 6-129 (313)
148 PRK11730 fadB multifunctional 97.9 0.00014 3E-09 77.5 13.1 115 99-217 314-454 (715)
149 COG0240 GpsA Glycerol-3-phosph 97.9 6E-05 1.3E-09 72.7 9.3 94 99-194 2-111 (329)
150 PRK14191 bifunctional 5,10-met 97.9 4E-05 8.6E-10 72.8 7.9 80 93-191 152-232 (285)
151 cd01079 NAD_bind_m-THF_DH NAD 97.9 8.2E-05 1.8E-09 66.8 9.4 97 86-189 50-157 (197)
152 PRK00258 aroE shikimate 5-dehy 97.9 6E-05 1.3E-09 71.3 8.8 71 93-163 118-196 (278)
153 TIGR02440 FadJ fatty oxidation 97.9 0.00017 3.8E-09 76.6 13.0 115 99-217 305-446 (699)
154 PRK06141 ornithine cyclodeamin 97.8 6.2E-05 1.3E-09 72.5 8.7 97 97-200 124-230 (314)
155 cd01076 NAD_bind_1_Glu_DH NAD( 97.8 7.6E-05 1.7E-09 68.8 8.8 115 94-217 27-162 (227)
156 TIGR02437 FadB fatty oxidation 97.8 0.00022 4.9E-09 76.0 13.1 115 99-217 314-454 (714)
157 TIGR03376 glycerol3P_DH glycer 97.8 0.0001 2.2E-09 71.9 9.8 90 100-191 1-119 (342)
158 PF13241 NAD_binding_7: Putati 97.8 3.6E-05 7.8E-10 62.0 5.4 86 95-188 4-91 (103)
159 TIGR02441 fa_ox_alpha_mit fatt 97.8 0.00021 4.6E-09 76.4 12.6 115 99-217 336-476 (737)
160 PTZ00345 glycerol-3-phosphate 97.8 0.00015 3.2E-09 71.4 10.5 94 99-194 12-135 (365)
161 cd05313 NAD_bind_2_Glu_DH NAD( 97.8 0.00054 1.2E-08 64.1 13.1 137 55-217 13-180 (254)
162 PF03720 UDPG_MGDP_dh_C: UDP-g 97.7 9E-05 1.9E-09 60.1 6.9 78 109-187 18-100 (106)
163 COG1250 FadB 3-hydroxyacyl-CoA 97.7 0.00042 9E-09 66.6 12.5 119 98-219 3-146 (307)
164 PRK14183 bifunctional 5,10-met 97.7 0.00011 2.5E-09 69.5 8.2 80 93-191 152-232 (281)
165 PRK11154 fadJ multifunctional 97.7 0.0004 8.6E-09 74.1 13.2 115 99-217 310-451 (708)
166 PRK12439 NAD(P)H-dependent gly 97.7 0.00012 2.6E-09 71.2 8.6 90 99-191 8-114 (341)
167 PRK14190 bifunctional 5,10-met 97.7 0.00016 3.4E-09 68.8 8.9 81 93-192 153-234 (284)
168 TIGR02371 ala_DH_arch alanine 97.7 0.00012 2.5E-09 71.0 8.2 89 98-192 128-226 (325)
169 PRK14620 NAD(P)H-dependent gly 97.7 0.00018 3.9E-09 69.3 9.5 90 100-191 2-109 (326)
170 cd01078 NAD_bind_H4MPT_DH NADP 97.7 0.00015 3.2E-09 64.7 8.1 96 93-192 23-133 (194)
171 COG0362 Gnd 6-phosphogluconate 97.7 0.00035 7.7E-09 68.5 11.1 154 99-266 4-167 (473)
172 PRK14170 bifunctional 5,10-met 97.7 0.00023 5E-09 67.6 9.5 81 92-191 151-232 (284)
173 COG0373 HemA Glutamyl-tRNA red 97.7 0.00015 3.1E-09 72.2 8.1 93 96-191 176-277 (414)
174 PRK14031 glutamate dehydrogena 97.7 0.00029 6.2E-09 70.9 10.2 117 93-216 223-368 (444)
175 PF02558 ApbA: Ketopantoate re 97.6 0.00018 3.9E-09 61.1 7.6 109 101-212 1-124 (151)
176 TIGR00507 aroE shikimate 5-deh 97.6 0.00024 5.3E-09 66.8 9.2 95 95-192 114-218 (270)
177 PRK06718 precorrin-2 dehydroge 97.6 0.00019 4.1E-09 64.9 7.8 88 94-187 6-99 (202)
178 PRK14186 bifunctional 5,10-met 97.6 0.00022 4.8E-09 68.1 8.4 117 93-247 153-270 (297)
179 TIGR01921 DAP-DH diaminopimela 97.6 0.0002 4.4E-09 69.2 8.3 105 99-208 4-115 (324)
180 PRK07340 ornithine cyclodeamin 97.6 0.00017 3.7E-09 69.2 7.8 89 97-192 124-221 (304)
181 PRK14173 bifunctional 5,10-met 97.6 0.00026 5.7E-09 67.3 8.5 81 93-192 150-231 (287)
182 PRK14169 bifunctional 5,10-met 97.6 0.00025 5.5E-09 67.3 8.3 80 93-191 151-231 (282)
183 PRK14982 acyl-ACP reductase; P 97.6 0.00024 5.3E-09 69.2 8.4 98 92-195 149-253 (340)
184 PRK14177 bifunctional 5,10-met 97.6 0.00029 6.3E-09 66.9 8.6 80 93-191 154-234 (284)
185 TIGR01763 MalateDH_bact malate 97.6 0.00036 7.9E-09 67.0 9.4 114 99-213 2-147 (305)
186 TIGR02354 thiF_fam2 thiamine b 97.6 0.00049 1.1E-08 62.2 9.7 92 94-186 17-143 (200)
187 TIGR01470 cysG_Nterm siroheme 97.6 0.00028 6.1E-09 64.0 8.2 89 94-187 5-99 (205)
188 PRK14172 bifunctional 5,10-met 97.6 0.00027 6E-09 66.9 8.3 80 93-191 153-233 (278)
189 PRK09414 glutamate dehydrogena 97.6 0.0005 1.1E-08 69.2 10.5 117 93-217 227-370 (445)
190 cd05211 NAD_bind_Glu_Leu_Phe_V 97.6 0.00074 1.6E-08 61.8 10.7 107 94-208 19-145 (217)
191 PRK14166 bifunctional 5,10-met 97.6 0.00031 6.7E-09 66.7 8.4 80 93-191 152-232 (282)
192 PRK14180 bifunctional 5,10-met 97.5 0.00036 7.8E-09 66.2 8.5 79 93-190 153-232 (282)
193 COG0686 Ald Alanine dehydrogen 97.5 0.00017 3.6E-09 68.9 6.1 93 95-188 165-268 (371)
194 PRK13940 glutamyl-tRNA reducta 97.5 0.00031 6.7E-09 70.3 8.2 90 95-189 178-274 (414)
195 PRK14030 glutamate dehydrogena 97.5 0.00087 1.9E-08 67.4 11.3 117 93-217 223-370 (445)
196 PRK14187 bifunctional 5,10-met 97.5 0.00041 8.8E-09 66.2 8.5 80 93-191 155-235 (294)
197 PRK14171 bifunctional 5,10-met 97.5 0.00041 8.8E-09 66.0 8.4 80 93-191 154-234 (288)
198 PLN02516 methylenetetrahydrofo 97.5 0.00046 9.9E-09 66.0 8.7 80 93-191 162-242 (299)
199 PF01408 GFO_IDH_MocA: Oxidore 97.5 0.00028 6E-09 57.4 6.1 102 100-206 2-113 (120)
200 PRK09310 aroDE bifunctional 3- 97.5 0.00031 6.7E-09 71.5 7.8 71 93-163 327-401 (477)
201 PTZ00117 malate dehydrogenase; 97.5 0.00083 1.8E-08 64.9 10.2 117 96-213 3-151 (319)
202 PLN02477 glutamate dehydrogena 97.5 0.0044 9.6E-08 61.9 15.5 116 93-217 201-337 (410)
203 PRK14182 bifunctional 5,10-met 97.5 0.00054 1.2E-08 65.0 8.6 80 93-191 152-232 (282)
204 PRK14193 bifunctional 5,10-met 97.5 0.00051 1.1E-08 65.2 8.5 110 93-245 153-265 (284)
205 smart00859 Semialdhyde_dh Semi 97.4 0.00056 1.2E-08 56.3 7.8 87 100-188 1-99 (122)
206 PLN02616 tetrahydrofolate dehy 97.4 0.00046 1E-08 67.4 8.2 80 93-191 226-306 (364)
207 PLN02897 tetrahydrofolate dehy 97.4 0.00049 1.1E-08 66.8 8.1 80 93-191 209-289 (345)
208 PRK06719 precorrin-2 dehydroge 97.4 0.00068 1.5E-08 58.9 8.3 69 93-162 8-80 (157)
209 PRK14181 bifunctional 5,10-met 97.4 0.00061 1.3E-08 64.8 8.5 80 93-191 148-232 (287)
210 COG1064 AdhP Zn-dependent alco 97.4 0.00066 1.4E-08 66.0 8.5 85 97-187 166-258 (339)
211 TIGR02992 ectoine_eutC ectoine 97.4 0.00078 1.7E-08 65.3 8.8 86 97-188 128-224 (326)
212 PRK13301 putative L-aspartate 97.4 0.0011 2.4E-08 62.3 9.4 101 99-204 3-112 (267)
213 COG0190 FolD 5,10-methylene-te 97.4 0.00042 9.1E-09 65.4 6.5 114 92-247 150-264 (283)
214 PRK14174 bifunctional 5,10-met 97.3 0.00078 1.7E-08 64.4 8.3 80 93-191 154-238 (295)
215 PRK06444 prephenate dehydrogen 97.3 0.00068 1.5E-08 61.2 7.2 61 100-192 2-63 (197)
216 PF00208 ELFV_dehydrog: Glutam 97.3 0.00083 1.8E-08 62.6 7.9 115 94-215 28-171 (244)
217 PRK14185 bifunctional 5,10-met 97.3 0.00097 2.1E-08 63.6 8.4 80 93-191 152-236 (293)
218 PRK14168 bifunctional 5,10-met 97.3 0.00095 2.1E-08 63.8 8.3 80 93-191 156-240 (297)
219 PRK00676 hemA glutamyl-tRNA re 97.3 0.00092 2E-08 65.1 8.2 95 95-193 171-266 (338)
220 PRK06823 ornithine cyclodeamin 97.3 0.0014 3E-08 63.3 9.4 88 98-191 128-225 (315)
221 PRK08618 ornithine cyclodeamin 97.3 0.00094 2E-08 64.6 8.2 87 97-190 126-223 (325)
222 PRK14184 bifunctional 5,10-met 97.3 0.00099 2.1E-08 63.4 7.9 79 93-190 152-235 (286)
223 PRK12549 shikimate 5-dehydroge 97.3 0.0012 2.6E-08 62.8 8.5 69 94-162 123-202 (284)
224 PF02423 OCD_Mu_crystall: Orni 97.3 0.00076 1.6E-08 65.0 7.3 90 99-192 129-228 (313)
225 PRK08291 ectoine utilization p 97.2 0.0015 3.2E-08 63.4 9.0 86 97-188 131-227 (330)
226 PRK13303 L-aspartate dehydroge 97.2 0.002 4.3E-08 60.6 9.6 104 99-207 2-114 (265)
227 PRK06046 alanine dehydrogenase 97.2 0.0012 2.5E-08 64.1 8.1 87 98-191 129-226 (326)
228 PRK01710 murD UDP-N-acetylmura 97.2 0.00086 1.9E-08 67.8 7.5 109 95-204 11-141 (458)
229 PRK14167 bifunctional 5,10-met 97.2 0.0013 2.7E-08 63.0 8.0 80 93-191 152-236 (297)
230 COG1712 Predicted dinucleotide 97.2 0.0015 3.3E-08 59.8 8.0 93 99-196 1-99 (255)
231 COG0334 GdhA Glutamate dehydro 97.1 0.0018 4E-08 64.1 8.8 108 93-207 202-330 (411)
232 cd00650 LDH_MDH_like NAD-depen 97.1 0.0016 3.5E-08 60.9 8.1 115 101-215 1-149 (263)
233 TIGR03026 NDP-sugDHase nucleot 97.1 0.0028 6E-08 63.2 10.1 90 95-187 310-409 (411)
234 COG1748 LYS9 Saccharopine dehy 97.1 0.002 4.4E-08 63.7 8.9 101 99-206 2-116 (389)
235 KOG2304|consensus 97.1 0.0004 8.7E-09 63.6 3.5 143 95-248 8-181 (298)
236 PTZ00079 NADP-specific glutama 97.1 0.0045 9.8E-08 62.4 11.1 118 93-217 232-379 (454)
237 PRK08269 3-hydroxybutyryl-CoA 97.1 0.0053 1.2E-07 59.2 11.1 106 109-217 1-141 (314)
238 KOG0023|consensus 97.1 0.0013 2.7E-08 63.2 6.6 88 97-187 181-278 (360)
239 PRK06223 malate dehydrogenase; 97.1 0.0029 6.2E-08 60.5 9.2 111 99-211 3-144 (307)
240 PRK01713 ornithine carbamoyltr 97.1 0.011 2.5E-07 57.5 13.3 130 39-188 117-275 (334)
241 PTZ00082 L-lactate dehydrogena 97.0 0.0029 6.3E-08 61.3 9.0 115 96-211 4-153 (321)
242 TIGR03316 ygeW probable carbam 97.0 0.015 3.2E-07 57.2 13.8 98 44-160 134-253 (357)
243 PRK06199 ornithine cyclodeamin 97.0 0.0021 4.5E-08 63.7 8.0 90 98-190 155-261 (379)
244 PLN02353 probable UDP-glucose 97.0 0.0043 9.4E-08 63.2 10.4 101 95-198 321-455 (473)
245 TIGR02356 adenyl_thiF thiazole 97.0 0.0022 4.7E-08 57.9 7.4 91 94-188 17-143 (202)
246 COG1004 Ugd Predicted UDP-gluc 97.0 0.0047 1E-07 60.9 9.9 108 99-206 1-138 (414)
247 PF00185 OTCace: Aspartate/orn 97.0 0.009 2E-07 51.9 10.6 92 97-188 1-120 (158)
248 cd05291 HicDH_like L-2-hydroxy 97.0 0.0048 1E-07 59.1 9.6 90 99-188 1-117 (306)
249 PF13380 CoA_binding_2: CoA bi 97.0 0.0089 1.9E-07 49.2 9.9 99 99-208 1-104 (116)
250 PRK05708 2-dehydropantoate 2-r 96.9 0.0073 1.6E-07 57.8 10.8 111 99-212 3-127 (305)
251 COG2423 Predicted ornithine cy 96.9 0.004 8.6E-08 60.5 8.9 86 98-189 130-226 (330)
252 PRK00048 dihydrodipicolinate r 96.9 0.0045 9.7E-08 58.0 8.8 63 99-161 2-69 (257)
253 PRK00779 ornithine carbamoyltr 96.9 0.015 3.3E-07 55.9 12.6 128 39-187 114-264 (304)
254 TIGR00670 asp_carb_tr aspartat 96.9 0.014 3E-07 56.1 12.3 128 39-187 111-262 (301)
255 TIGR00658 orni_carb_tr ornithi 96.9 0.014 3E-07 56.1 12.2 128 39-187 110-263 (304)
256 PRK06407 ornithine cyclodeamin 96.9 0.0041 8.9E-08 59.7 8.5 87 98-190 117-214 (301)
257 COG0026 PurK Phosphoribosylami 96.9 0.0019 4E-08 63.1 6.1 61 98-158 1-68 (375)
258 COG0569 TrkA K+ transport syst 96.9 0.0042 9.2E-08 57.1 8.3 65 99-163 1-77 (225)
259 PRK02255 putrescine carbamoylt 96.9 0.019 4E-07 56.1 13.1 130 40-187 114-271 (338)
260 PRK03369 murD UDP-N-acetylmura 96.9 0.0026 5.6E-08 65.0 7.4 109 96-204 10-141 (488)
261 PRK09496 trkA potassium transp 96.9 0.0044 9.5E-08 62.0 8.9 66 99-164 1-77 (453)
262 COG4007 Predicted dehydrogenas 96.9 0.0054 1.2E-07 57.3 8.6 89 110-202 33-128 (340)
263 COG0281 SfcA Malic enzyme [Ene 96.8 0.042 9E-07 54.7 15.2 204 23-265 135-371 (432)
264 PRK03515 ornithine carbamoyltr 96.8 0.01 2.2E-07 57.9 10.9 130 39-187 116-274 (336)
265 COG1648 CysG Siroheme synthase 96.8 0.0035 7.5E-08 57.2 7.2 89 93-187 7-102 (210)
266 PF02254 TrkA_N: TrkA-N domain 96.8 0.0061 1.3E-07 49.2 8.0 84 101-186 1-94 (116)
267 PF01113 DapB_N: Dihydrodipico 96.8 0.0045 9.8E-08 51.5 7.3 97 100-202 2-112 (124)
268 KOG2653|consensus 96.8 0.0065 1.4E-07 59.1 9.1 154 99-266 7-171 (487)
269 cd01339 LDH-like_MDH L-lactate 96.8 0.0044 9.5E-08 59.2 7.9 110 101-211 1-140 (300)
270 PRK00683 murD UDP-N-acetylmura 96.8 0.0041 9E-08 62.0 8.0 107 98-204 3-126 (418)
271 PF01118 Semialdhyde_dh: Semia 96.8 0.0041 8.9E-08 51.3 6.7 85 100-189 1-98 (121)
272 PRK07232 bifunctional malic en 96.8 0.048 1E-06 58.4 16.0 160 44-241 152-325 (752)
273 cd00762 NAD_bind_malic_enz NAD 96.7 0.036 7.9E-07 51.9 13.3 159 59-241 4-195 (254)
274 COG0771 MurD UDP-N-acetylmuram 96.7 0.009 2E-07 60.3 9.9 123 96-219 5-157 (448)
275 PRK14106 murD UDP-N-acetylmura 96.7 0.0045 9.7E-08 62.1 7.8 110 95-204 2-132 (450)
276 TIGR01850 argC N-acetyl-gamma- 96.7 0.0049 1.1E-07 60.3 7.7 91 99-194 1-105 (346)
277 PRK04284 ornithine carbamoyltr 96.7 0.029 6.3E-07 54.7 12.9 130 39-188 116-274 (332)
278 PRK01390 murD UDP-N-acetylmura 96.7 0.0043 9.4E-08 62.5 7.5 110 95-204 6-138 (460)
279 PRK12862 malic enzyme; Reviewe 96.7 0.052 1.1E-06 58.4 15.9 158 44-241 160-333 (763)
280 PRK11891 aspartate carbamoyltr 96.7 0.028 6.1E-07 56.5 12.9 132 39-187 198-354 (429)
281 PRK02102 ornithine carbamoyltr 96.7 0.022 4.7E-07 55.5 11.8 128 39-187 117-272 (331)
282 PRK12562 ornithine carbamoyltr 96.7 0.033 7.1E-07 54.3 12.8 131 39-188 116-275 (334)
283 TIGR02964 xanthine_xdhC xanthi 96.6 0.013 2.9E-07 54.6 9.7 87 99-206 101-187 (246)
284 TIGR01809 Shik-DH-AROM shikima 96.6 0.0044 9.5E-08 58.9 6.5 69 95-163 122-201 (282)
285 PLN02527 aspartate carbamoyltr 96.6 0.035 7.7E-07 53.4 12.7 128 39-187 112-265 (306)
286 PRK04207 glyceraldehyde-3-phos 96.6 0.0064 1.4E-07 59.4 7.7 64 99-162 2-88 (341)
287 PRK02006 murD UDP-N-acetylmura 96.6 0.0053 1.1E-07 62.7 7.4 64 96-159 5-76 (498)
288 PRK02472 murD UDP-N-acetylmura 96.6 0.0066 1.4E-07 60.8 7.9 110 95-204 2-132 (447)
289 PRK00421 murC UDP-N-acetylmura 96.6 0.0061 1.3E-07 61.6 7.6 110 96-205 5-132 (461)
290 cd05292 LDH_2 A subgroup of L- 96.6 0.0052 1.1E-07 59.0 6.8 64 99-162 1-77 (308)
291 cd05293 LDH_1 A subgroup of L- 96.6 0.013 2.9E-07 56.5 9.6 113 99-212 4-146 (312)
292 PRK12475 thiamine/molybdopteri 96.6 0.0079 1.7E-07 58.7 8.0 90 94-187 20-147 (338)
293 COG1004 Ugd Predicted UDP-gluc 96.6 0.0085 1.8E-07 59.2 8.1 87 96-186 308-406 (414)
294 PRK08306 dipicolinate synthase 96.6 0.013 2.8E-07 56.1 9.2 105 97-208 1-116 (296)
295 PRK03659 glutathione-regulated 96.6 0.0087 1.9E-07 62.7 8.8 91 98-190 400-500 (601)
296 PRK00066 ldh L-lactate dehydro 96.6 0.0062 1.3E-07 58.8 7.1 93 97-189 5-123 (315)
297 PRK13814 pyrB aspartate carbam 96.6 0.014 3.1E-07 56.2 9.6 93 45-158 124-223 (310)
298 PRK00141 murD UDP-N-acetylmura 96.5 0.006 1.3E-07 62.0 7.3 112 94-205 11-146 (473)
299 PRK07589 ornithine cyclodeamin 96.5 0.0086 1.9E-07 58.6 8.0 88 98-189 129-226 (346)
300 PRK12861 malic enzyme; Reviewe 96.5 0.078 1.7E-06 56.9 15.6 178 23-241 125-329 (764)
301 PRK10669 putative cation:proto 96.5 0.0073 1.6E-07 62.6 7.8 86 99-186 418-513 (558)
302 PRK15182 Vi polysaccharide bio 96.5 0.018 4E-07 57.9 10.3 96 93-192 309-416 (425)
303 PRK00856 pyrB aspartate carbam 96.5 0.028 6E-07 54.1 10.9 125 40-187 118-261 (305)
304 PRK11064 wecC UDP-N-acetyl-D-m 96.5 0.0088 1.9E-07 59.9 7.7 69 93-161 315-395 (415)
305 PRK12548 shikimate 5-dehydroge 96.4 0.01 2.2E-07 56.6 7.7 38 94-131 122-160 (289)
306 PRK11579 putative oxidoreducta 96.4 0.013 2.9E-07 56.8 8.3 65 99-164 5-76 (346)
307 PF00056 Ldh_1_N: lactate/mala 96.4 0.0058 1.2E-07 52.1 5.0 63 99-161 1-78 (141)
308 cd08230 glucose_DH Glucose deh 96.3 0.018 3.8E-07 55.8 8.9 87 97-188 172-269 (355)
309 PRK06019 phosphoribosylaminoim 96.3 0.0078 1.7E-07 59.2 6.5 62 98-159 2-70 (372)
310 cd00757 ThiF_MoeB_HesA_family 96.3 0.0093 2E-07 54.7 6.6 91 94-188 17-143 (228)
311 PRK03562 glutathione-regulated 96.3 0.013 2.7E-07 61.8 8.3 88 98-187 400-497 (621)
312 cd05312 NAD_bind_1_malic_enz N 96.3 0.058 1.3E-06 51.2 12.0 182 59-264 4-222 (279)
313 PRK10637 cysG siroheme synthas 96.3 0.015 3.1E-07 59.1 8.4 90 94-188 8-103 (457)
314 cd05297 GH4_alpha_glucosidase_ 96.3 0.012 2.6E-07 59.1 7.7 110 99-209 1-165 (423)
315 PF13478 XdhC_C: XdhC Rossmann 96.3 0.012 2.6E-07 50.0 6.5 85 101-211 1-85 (136)
316 cd00300 LDH_like L-lactate deh 96.3 0.017 3.7E-07 55.3 8.2 89 101-189 1-116 (300)
317 TIGR03215 ac_ald_DH_ac acetald 96.2 0.025 5.5E-07 53.9 9.1 86 99-189 2-96 (285)
318 PLN02342 ornithine carbamoyltr 96.2 0.085 1.8E-06 51.7 12.9 128 39-187 156-306 (348)
319 PRK08300 acetaldehyde dehydrog 96.2 0.023 5E-07 54.6 8.7 86 98-188 4-101 (302)
320 PLN02520 bifunctional 3-dehydr 96.2 0.019 4.1E-07 59.3 8.7 38 94-131 375-412 (529)
321 PRK01438 murD UDP-N-acetylmura 96.2 0.019 4E-07 58.3 8.6 112 93-204 11-146 (480)
322 TIGR01761 thiaz-red thiazoliny 96.2 0.034 7.3E-07 54.4 10.0 107 99-208 4-117 (343)
323 PRK09880 L-idonate 5-dehydroge 96.2 0.024 5.3E-07 54.6 9.0 87 97-188 169-266 (343)
324 PLN02968 Probable N-acetyl-gam 96.2 0.013 2.9E-07 58.0 7.2 98 97-200 37-146 (381)
325 PRK00436 argC N-acetyl-gamma-g 96.2 0.018 3.9E-07 56.2 8.0 92 99-195 3-106 (343)
326 PRK04148 hypothetical protein; 96.2 0.016 3.4E-07 49.2 6.6 72 97-169 16-94 (134)
327 PRK04308 murD UDP-N-acetylmura 96.2 0.014 3.1E-07 58.6 7.5 110 95-204 2-134 (445)
328 COG1893 ApbA Ketopantoate redu 96.1 0.026 5.7E-07 54.3 8.8 139 99-244 1-154 (307)
329 PRK12749 quinate/shikimate deh 96.1 0.016 3.4E-07 55.4 7.1 39 93-131 119-158 (288)
330 PRK05562 precorrin-2 dehydroge 96.1 0.024 5.2E-07 52.2 8.0 90 93-187 20-115 (223)
331 PRK07688 thiamine/molybdopteri 96.1 0.022 4.7E-07 55.7 8.1 82 94-176 20-139 (339)
332 COG0673 MviM Predicted dehydro 96.1 0.022 4.7E-07 54.6 8.0 67 99-165 4-80 (342)
333 PRK06270 homoserine dehydrogen 96.1 0.018 3.9E-07 56.2 7.4 108 100-207 4-145 (341)
334 TIGR00036 dapB dihydrodipicoli 96.0 0.03 6.5E-07 52.7 8.5 63 99-161 2-77 (266)
335 PRK05690 molybdopterin biosynt 96.0 0.022 4.8E-07 53.0 7.3 91 94-188 28-154 (245)
336 PRK07200 aspartate/ornithine c 95.9 0.12 2.7E-06 51.4 12.6 65 95-159 184-269 (395)
337 PRK14804 ornithine carbamoyltr 95.9 0.072 1.6E-06 51.4 10.6 102 39-160 113-226 (311)
338 PRK08192 aspartate carbamoyltr 95.9 0.13 2.9E-06 50.2 12.5 103 40-159 117-233 (338)
339 PLN02819 lysine-ketoglutarate 95.9 0.026 5.6E-07 62.5 8.3 66 97-162 568-658 (1042)
340 PRK03803 murD UDP-N-acetylmura 95.8 0.02 4.3E-07 57.6 6.8 107 98-204 6-132 (448)
341 PRK04690 murD UDP-N-acetylmura 95.8 0.02 4.4E-07 58.1 6.9 108 96-204 6-139 (468)
342 COG0169 AroE Shikimate 5-dehyd 95.8 0.034 7.4E-07 53.0 7.9 69 94-162 122-200 (283)
343 PF13460 NAD_binding_10: NADH( 95.8 0.018 3.8E-07 50.0 5.5 63 101-164 1-72 (183)
344 COG5322 Predicted dehydrogenas 95.8 0.021 4.5E-07 53.8 6.1 100 92-196 161-269 (351)
345 cd05188 MDR Medium chain reduc 95.8 0.11 2.4E-06 47.0 10.9 91 96-191 133-235 (271)
346 PRK08644 thiamine biosynthesis 95.8 0.047 1E-06 49.7 8.3 82 94-176 24-140 (212)
347 PRK03806 murD UDP-N-acetylmura 95.7 0.033 7.1E-07 55.8 7.7 109 95-204 3-129 (438)
348 TIGR02822 adh_fam_2 zinc-bindi 95.7 0.059 1.3E-06 51.8 9.0 88 97-189 165-255 (329)
349 TIGR02355 moeB molybdopterin s 95.7 0.032 6.8E-07 51.9 6.9 90 94-187 20-145 (240)
350 PRK09496 trkA potassium transp 95.6 0.053 1.1E-06 54.2 8.9 88 96-185 229-328 (453)
351 TIGR03366 HpnZ_proposed putati 95.5 0.052 1.1E-06 50.8 8.0 46 97-142 120-167 (280)
352 PLN02948 phosphoribosylaminoim 95.5 0.035 7.6E-07 58.0 7.4 68 95-162 19-93 (577)
353 PF02629 CoA_binding: CoA bind 95.5 0.018 4E-07 45.6 4.0 86 99-188 4-94 (96)
354 TIGR02853 spore_dpaA dipicolin 95.4 0.089 1.9E-06 50.2 9.2 104 98-208 1-115 (287)
355 PRK04523 N-acetylornithine car 95.4 0.19 4E-06 49.1 11.6 100 39-160 131-252 (335)
356 PF03435 Saccharop_dh: Sacchar 95.4 0.026 5.7E-07 55.5 5.7 81 101-187 1-97 (386)
357 PF04016 DUF364: Domain of unk 95.4 0.023 4.9E-07 48.9 4.6 93 96-197 9-104 (147)
358 cd01486 Apg7 Apg7 is an E1-lik 95.3 0.044 9.6E-07 52.6 6.7 86 100-189 1-141 (307)
359 TIGR01087 murD UDP-N-acetylmur 95.3 0.1 2.2E-06 52.2 9.6 107 100-206 1-128 (433)
360 KOG2711|consensus 95.3 0.03 6.4E-07 54.3 5.5 164 95-265 18-235 (372)
361 PRK05086 malate dehydrogenase; 95.3 0.11 2.5E-06 50.0 9.4 93 99-191 1-121 (312)
362 TIGR02717 AcCoA-syn-alpha acet 95.3 0.17 3.8E-06 51.2 11.1 109 96-211 5-126 (447)
363 cd01487 E1_ThiF_like E1_ThiF_l 95.2 0.11 2.3E-06 45.8 8.4 76 100-176 1-111 (174)
364 PRK03815 murD UDP-N-acetylmura 95.2 0.044 9.5E-07 54.7 6.7 103 100-204 2-113 (401)
365 PF05368 NmrA: NmrA-like famil 95.2 0.04 8.8E-07 49.9 5.8 63 101-163 1-75 (233)
366 PRK01368 murD UDP-N-acetylmura 95.2 0.058 1.3E-06 54.6 7.5 107 97-204 5-128 (454)
367 PRK10206 putative oxidoreducta 95.1 0.054 1.2E-06 52.8 6.8 65 100-164 3-76 (344)
368 PTZ00325 malate dehydrogenase; 95.1 0.04 8.7E-07 53.4 5.8 67 96-162 6-86 (321)
369 cd01492 Aos1_SUMO Ubiquitin ac 95.1 0.08 1.7E-06 47.6 7.4 38 94-131 17-55 (197)
370 PRK14027 quinate/shikimate deh 95.1 0.056 1.2E-06 51.5 6.7 67 95-161 124-203 (283)
371 PLN02602 lactate dehydrogenase 95.1 0.059 1.3E-06 52.9 7.0 90 99-189 38-155 (350)
372 TIGR01532 E4PD_g-proteo D-eryt 95.1 0.097 2.1E-06 50.9 8.3 30 100-129 1-34 (325)
373 COG0078 ArgF Ornithine carbamo 95.0 0.4 8.6E-06 46.0 12.1 143 23-187 100-269 (310)
374 COG3288 PntA NAD/NADP transhyd 95.0 0.073 1.6E-06 51.1 7.1 94 94-188 160-281 (356)
375 KOG0022|consensus 95.0 0.19 4.2E-06 48.4 10.0 46 97-142 192-239 (375)
376 PRK08223 hypothetical protein; 95.0 0.087 1.9E-06 50.3 7.7 91 94-187 23-150 (287)
377 cd01483 E1_enzyme_family Super 95.0 0.18 4E-06 42.4 9.0 32 100-131 1-33 (143)
378 PLN02586 probable cinnamyl alc 95.0 0.16 3.4E-06 49.6 9.6 86 97-187 183-277 (360)
379 cd01338 MDH_choloroplast_like 95.0 0.13 2.8E-06 49.9 8.9 98 99-198 3-136 (322)
380 TIGR01161 purK phosphoribosyla 95.0 0.051 1.1E-06 52.8 6.2 60 100-159 1-67 (352)
381 PRK12550 shikimate 5-dehydroge 95.0 0.076 1.7E-06 50.3 7.1 63 98-162 122-188 (272)
382 PRK08762 molybdopterin biosynt 94.9 0.074 1.6E-06 52.5 7.3 90 95-188 132-257 (376)
383 cd05294 LDH-like_MDH_nadp A la 94.9 0.074 1.6E-06 51.2 7.0 63 99-161 1-81 (309)
384 CHL00194 ycf39 Ycf39; Provisio 94.9 0.069 1.5E-06 50.9 6.7 63 99-161 1-73 (317)
385 cd08239 THR_DH_like L-threonin 94.9 0.12 2.6E-06 49.3 8.4 45 97-141 163-209 (339)
386 TIGR01381 E1_like_apg7 E1-like 94.8 0.16 3.5E-06 53.4 9.6 128 44-188 295-480 (664)
387 PF05222 AlaDh_PNT_N: Alanine 94.8 0.26 5.6E-06 41.8 9.3 96 112-217 18-119 (136)
388 PRK14573 bifunctional D-alanyl 94.7 0.079 1.7E-06 57.5 7.5 107 99-205 5-129 (809)
389 PRK12769 putative oxidoreducta 94.7 0.098 2.1E-06 55.4 8.0 67 96-162 325-422 (654)
390 PRK15057 UDP-glucose 6-dehydro 94.7 0.077 1.7E-06 52.7 6.8 64 96-161 294-368 (388)
391 cd05290 LDH_3 A subgroup of L- 94.7 0.069 1.5E-06 51.4 6.2 62 100-161 1-77 (307)
392 PF03447 NAD_binding_3: Homose 94.7 0.058 1.3E-06 43.9 4.9 96 105-205 1-110 (117)
393 PRK15076 alpha-galactosidase; 94.7 0.11 2.5E-06 52.3 8.0 112 99-211 2-169 (431)
394 PRK05786 fabG 3-ketoacyl-(acyl 94.7 0.15 3.2E-06 45.9 8.1 37 95-131 2-39 (238)
395 COG1063 Tdh Threonine dehydrog 94.7 0.21 4.4E-06 48.8 9.6 87 98-189 169-270 (350)
396 cd05283 CAD1 Cinnamyl alcohol 94.6 0.17 3.8E-06 48.3 8.9 87 97-188 169-263 (337)
397 cd08237 ribitol-5-phosphate_DH 94.6 0.2 4.4E-06 48.3 9.4 88 97-187 163-255 (341)
398 PRK07411 hypothetical protein; 94.6 0.078 1.7E-06 52.7 6.6 86 94-180 34-155 (390)
399 PRK05600 thiamine biosynthesis 94.6 0.1 2.2E-06 51.5 7.4 82 94-176 37-154 (370)
400 PLN02178 cinnamyl-alcohol dehy 94.6 0.19 4E-06 49.5 9.2 45 97-141 178-224 (375)
401 PRK12809 putative oxidoreducta 94.6 0.091 2E-06 55.5 7.4 67 96-162 308-405 (639)
402 PRK07877 hypothetical protein; 94.6 0.1 2.2E-06 55.8 7.8 82 94-177 103-220 (722)
403 PRK02705 murD UDP-N-acetylmura 94.6 0.1 2.2E-06 52.5 7.5 105 100-204 2-133 (459)
404 TIGR03201 dearomat_had 6-hydro 94.6 0.13 2.8E-06 49.6 7.9 45 97-141 166-211 (349)
405 PRK05597 molybdopterin biosynt 94.6 0.11 2.4E-06 51.0 7.4 82 94-176 24-141 (355)
406 PRK13376 pyrB bifunctional asp 94.6 0.4 8.7E-06 49.5 11.6 96 93-188 169-293 (525)
407 TIGR01082 murC UDP-N-acetylmur 94.5 0.094 2E-06 52.8 7.0 105 101-205 2-124 (448)
408 PRK05442 malate dehydrogenase; 94.5 0.13 2.9E-06 49.9 7.7 97 99-197 5-137 (326)
409 PRK04663 murD UDP-N-acetylmura 94.5 0.11 2.4E-06 52.2 7.3 108 96-204 4-132 (438)
410 TIGR01772 MDH_euk_gproteo mala 94.4 0.13 2.7E-06 49.8 7.4 91 100-190 1-118 (312)
411 PLN02383 aspartate semialdehyd 94.4 0.11 2.4E-06 50.9 6.9 86 98-188 7-100 (344)
412 cd08281 liver_ADH_like1 Zinc-d 94.4 0.17 3.6E-06 49.3 8.3 45 97-141 191-237 (371)
413 TIGR01851 argC_other N-acetyl- 94.4 0.19 4.2E-06 48.4 8.4 77 99-188 2-80 (310)
414 TIGR03736 PRTRC_ThiF PRTRC sys 94.4 0.23 5.1E-06 46.3 8.8 90 97-189 10-142 (244)
415 PLN02272 glyceraldehyde-3-phos 94.3 0.072 1.6E-06 53.3 5.5 36 99-134 86-123 (421)
416 cd08234 threonine_DH_like L-th 94.3 0.2 4.4E-06 47.4 8.4 90 97-191 159-260 (334)
417 PRK14874 aspartate-semialdehyd 94.3 0.098 2.1E-06 50.9 6.2 87 98-189 1-95 (334)
418 cd01336 MDH_cytoplasmic_cytoso 94.1 0.092 2E-06 51.0 5.7 89 100-188 4-128 (325)
419 PLN00106 malate dehydrogenase 94.1 0.11 2.3E-06 50.5 6.1 114 98-211 18-164 (323)
420 PF00899 ThiF: ThiF family; I 94.1 0.057 1.2E-06 45.1 3.7 34 98-131 2-36 (135)
421 TIGR01202 bchC 2-desacetyl-2-h 94.0 0.26 5.6E-06 46.8 8.6 85 97-188 144-231 (308)
422 PRK07878 molybdopterin biosynt 94.0 0.13 2.9E-06 51.1 6.8 83 94-177 38-156 (392)
423 PRK06349 homoserine dehydrogen 94.0 0.18 4E-06 50.7 7.7 105 99-207 4-124 (426)
424 cd01337 MDH_glyoxysomal_mitoch 94.0 0.22 4.7E-06 48.1 7.9 92 99-190 1-119 (310)
425 PRK06182 short chain dehydroge 94.0 0.22 4.8E-06 46.0 7.8 35 97-131 2-37 (273)
426 PRK14851 hypothetical protein; 93.9 0.26 5.5E-06 52.6 9.0 166 94-267 39-257 (679)
427 TIGR01318 gltD_gamma_fam gluta 93.9 0.18 3.8E-06 51.2 7.5 69 96-164 139-238 (467)
428 PRK12771 putative glutamate sy 93.9 0.17 3.6E-06 52.6 7.5 69 95-163 134-233 (564)
429 PLN03209 translocon at the inn 93.8 0.34 7.4E-06 50.5 9.4 36 96-131 78-114 (576)
430 PRK06392 homoserine dehydrogen 93.8 0.24 5.2E-06 48.1 7.9 107 100-207 2-136 (326)
431 PRK13529 malate dehydrogenase; 93.8 2.6 5.7E-05 43.8 15.6 193 42-262 260-497 (563)
432 PRK10537 voltage-gated potassi 93.7 0.27 5.9E-06 49.0 8.2 85 98-185 240-333 (393)
433 cd08245 CAD Cinnamyl alcohol d 93.6 0.38 8.2E-06 45.5 8.9 88 97-189 162-257 (330)
434 TIGR01759 MalateDH-SF1 malate 93.6 0.15 3.3E-06 49.4 6.2 97 99-197 4-136 (323)
435 PRK12814 putative NADPH-depend 93.6 0.21 4.6E-06 52.9 7.7 67 97-163 192-289 (652)
436 PRK14805 ornithine carbamoyltr 93.6 1.5 3.4E-05 42.1 12.9 99 40-160 110-222 (302)
437 TIGR03451 mycoS_dep_FDH mycoth 93.6 0.28 6E-06 47.5 7.9 45 97-141 176-222 (358)
438 COG2344 AT-rich DNA-binding pr 93.6 0.098 2.1E-06 46.9 4.3 63 99-162 85-156 (211)
439 TIGR02825 B4_12hDH leukotriene 93.5 0.31 6.8E-06 46.2 8.1 86 97-188 138-237 (325)
440 cd08255 2-desacetyl-2-hydroxye 93.5 0.42 9E-06 44.0 8.7 89 97-190 97-192 (277)
441 PF00070 Pyr_redox: Pyridine n 93.4 0.16 3.5E-06 38.4 4.9 32 100-131 1-32 (80)
442 PLN02514 cinnamyl-alcohol dehy 93.4 0.41 8.8E-06 46.5 8.9 88 96-188 179-275 (357)
443 cd08296 CAD_like Cinnamyl alco 93.4 0.4 8.8E-06 45.7 8.7 45 97-141 163-208 (333)
444 PLN02740 Alcohol dehydrogenase 93.4 0.37 8E-06 47.2 8.6 45 97-141 198-244 (381)
445 COG2910 Putative NADH-flavin r 93.4 0.15 3.1E-06 45.8 5.0 64 99-163 1-73 (211)
446 TIGR01771 L-LDH-NAD L-lactate 93.4 0.25 5.5E-06 47.3 7.2 87 103-189 1-114 (299)
447 cd01491 Ube1_repeat1 Ubiquitin 93.3 0.37 8.1E-06 46.0 8.2 92 94-189 15-138 (286)
448 COG0677 WecC UDP-N-acetyl-D-ma 93.3 0.47 1E-05 47.2 9.0 93 93-190 317-421 (436)
449 cd00704 MDH Malate dehydrogena 93.2 0.14 3.1E-06 49.6 5.3 97 99-197 1-133 (323)
450 PRK11863 N-acetyl-gamma-glutam 93.2 0.35 7.6E-06 46.8 7.9 77 99-188 3-81 (313)
451 cd08242 MDR_like Medium chain 93.2 0.48 1E-05 44.6 8.8 86 97-187 155-244 (319)
452 cd08293 PTGR2 Prostaglandin re 93.1 0.4 8.8E-06 45.7 8.2 85 98-188 155-254 (345)
453 KOG0024|consensus 93.1 0.88 1.9E-05 44.2 10.2 128 97-241 169-298 (354)
454 PLN00112 malate dehydrogenase 93.1 0.74 1.6E-05 46.7 10.3 100 99-200 101-236 (444)
455 TIGR02818 adh_III_F_hyde S-(hy 93.1 0.47 1E-05 46.2 8.7 45 97-141 185-231 (368)
456 PRK06728 aspartate-semialdehyd 93.0 0.28 6.1E-06 48.1 7.0 85 98-188 5-99 (347)
457 PLN03129 NADP-dependent malic 93.0 5 0.00011 42.0 16.2 193 43-263 287-517 (581)
458 PRK14852 hypothetical protein; 93.0 1.2 2.6E-05 49.1 12.3 165 94-266 328-545 (989)
459 TIGR03570 NeuD_NnaD sugar O-ac 92.9 0.36 7.7E-06 42.2 7.0 63 100-162 1-68 (201)
460 cd08274 MDR9 Medium chain dehy 92.9 0.63 1.4E-05 44.3 9.2 45 97-141 177-222 (350)
461 cd08298 CAD2 Cinnamyl alcohol 92.9 0.61 1.3E-05 44.1 9.0 88 96-188 166-256 (329)
462 PRK10309 galactitol-1-phosphat 92.8 0.52 1.1E-05 45.2 8.5 45 97-141 160-206 (347)
463 cd08277 liver_alcohol_DH_like 92.8 0.58 1.3E-05 45.5 8.9 46 96-141 183-230 (365)
464 PRK08040 putative semialdehyde 92.8 0.26 5.7E-06 48.1 6.5 86 97-188 3-97 (336)
465 PF03949 Malic_M: Malic enzyme 92.8 0.34 7.5E-06 45.4 7.0 124 59-204 4-157 (255)
466 cd08233 butanediol_DH_like (2R 92.8 0.7 1.5E-05 44.3 9.3 45 97-141 172-218 (351)
467 PRK12779 putative bifunctional 92.7 0.28 6E-06 54.3 7.2 67 96-162 304-402 (944)
468 cd08231 MDR_TM0436_like Hypoth 92.7 0.61 1.3E-05 44.9 8.9 45 97-141 177-223 (361)
469 TIGR01758 MDH_euk_cyt malate d 92.7 0.15 3.3E-06 49.5 4.6 96 100-197 1-132 (324)
470 COG0039 Mdh Malate/lactate deh 92.7 0.22 4.8E-06 48.1 5.6 67 99-165 1-84 (313)
471 TIGR00745 apbA_panE 2-dehydrop 92.6 0.81 1.8E-05 42.7 9.4 97 109-209 2-113 (293)
472 PRK08374 homoserine dehydrogen 92.6 0.66 1.4E-05 45.2 8.9 116 99-219 3-155 (336)
473 TIGR01832 kduD 2-deoxy-D-gluco 92.5 0.71 1.5E-05 41.7 8.7 37 95-131 2-39 (248)
474 cd08301 alcohol_DH_plants Plan 92.5 0.72 1.6E-05 44.8 9.1 45 97-141 187-233 (369)
475 TIGR03466 HpnA hopanoid-associ 92.5 0.22 4.7E-06 46.9 5.3 63 99-161 1-73 (328)
476 COG0540 PyrB Aspartate carbamo 92.5 0.35 7.5E-06 46.5 6.6 64 96-159 156-231 (316)
477 PLN02662 cinnamyl-alcohol dehy 92.5 0.38 8.2E-06 45.4 7.0 65 97-161 3-85 (322)
478 PLN03154 putative allyl alcoho 92.5 0.49 1.1E-05 45.9 7.9 45 97-141 158-205 (348)
479 PRK06550 fabG 3-ketoacyl-(acyl 92.4 0.27 5.8E-06 44.1 5.7 37 95-131 2-39 (235)
480 COG0493 GltD NADPH-dependent g 92.4 0.22 4.8E-06 50.6 5.5 70 93-162 118-218 (457)
481 cd08295 double_bond_reductase_ 92.4 0.57 1.2E-05 44.8 8.2 45 97-141 151-198 (338)
482 PLN00141 Tic62-NAD(P)-related 92.3 0.4 8.6E-06 44.0 6.7 38 94-131 13-51 (251)
483 PRK07523 gluconate 5-dehydroge 92.3 0.59 1.3E-05 42.6 7.9 37 95-131 7-44 (255)
484 PLN02827 Alcohol dehydrogenase 92.3 0.64 1.4E-05 45.6 8.6 45 97-141 193-239 (378)
485 PTZ00317 NADP-dependent malic 92.2 4.8 0.0001 41.9 14.9 191 44-262 264-496 (559)
486 KOG4230|consensus 92.2 2.4 5.2E-05 44.2 12.4 178 93-306 157-341 (935)
487 TIGR01296 asd_B aspartate-semi 92.2 0.25 5.5E-06 48.2 5.4 84 100-188 1-92 (339)
488 PLN02686 cinnamoyl-CoA reducta 92.2 0.55 1.2E-05 46.0 7.9 36 95-130 50-86 (367)
489 PF00107 ADH_zinc_N: Zinc-bind 92.1 0.19 4.1E-06 41.0 3.9 77 109-190 2-91 (130)
490 KOG2741|consensus 92.1 0.43 9.4E-06 46.5 6.8 69 99-167 7-87 (351)
491 PRK08328 hypothetical protein; 92.0 0.23 4.9E-06 45.8 4.7 37 94-130 23-60 (231)
492 PRK10083 putative oxidoreducta 92.0 0.81 1.7E-05 43.5 8.7 45 97-141 160-207 (339)
493 PRK08217 fabG 3-ketoacyl-(acyl 92.0 0.74 1.6E-05 41.4 8.0 37 95-131 2-39 (253)
494 cd08289 MDR_yhfp_like Yhfp put 92.0 0.86 1.9E-05 42.8 8.7 45 97-141 146-192 (326)
495 cd08260 Zn_ADH6 Alcohol dehydr 92.0 0.85 1.8E-05 43.5 8.8 88 97-189 165-265 (345)
496 PLN02657 3,8-divinyl protochlo 91.9 0.38 8.2E-06 47.7 6.5 41 91-131 53-94 (390)
497 PLN02427 UDP-apiose/xylose syn 91.9 0.41 8.8E-06 46.9 6.6 69 92-160 8-94 (386)
498 PRK07231 fabG 3-ketoacyl-(acyl 91.9 0.57 1.2E-05 42.2 7.2 37 95-131 2-39 (251)
499 PRK12810 gltD glutamate syntha 91.9 0.49 1.1E-05 48.0 7.4 67 96-162 141-238 (471)
500 PLN02214 cinnamoyl-CoA reducta 91.9 0.53 1.1E-05 45.5 7.3 67 95-161 7-90 (342)
No 1
>KOG0068|consensus
Probab=100.00 E-value=1.4e-83 Score=601.12 Aligned_cols=327 Identities=51% Similarity=0.785 Sum_probs=310.4
Q ss_pred CceEEEEeCCCCCCHHHhcccC--cceEEEcccCcCccChhhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccc
Q psy6348 1 KYDGLVVRSDTKVTAEVLQASN--LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGC 78 (333)
Q Consensus 1 ~~daliv~s~~~v~~~~l~~~~--Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~ 78 (333)
++|+++|||.|++|+++|+++. ||+|+|+|+|+||||+++|+++||.|+|+|.+|+.++|||+++|+++++|+++++.
T Consensus 47 ~~~aviVrs~tkvtadvl~aa~~~lkvVgrag~G~dNVDL~AAte~gi~Vvn~P~~Ns~saAEltigli~SLaR~i~~A~ 126 (406)
T KOG0068|consen 47 DCDALIVRSKTKVTADVLEAAAGGLKVVGRAGIGVDNVDLKAATENGILVVNTPTANSRSAAELTIGLILSLARQIGQAS 126 (406)
T ss_pred cCCEEEEEeCCeecHHHHHhhcCCeEEEEecccCccccChhhHHhCCeEEEeCCCCChHHHHHHHHHHHHHHhhhcchhh
Confidence 5899999999999999999654 99999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCcccccCCCccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEE
Q psy6348 79 QSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITV 158 (333)
Q Consensus 79 ~~~~~g~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l 158 (333)
.++|+|+|+|..+.|.||+|||+||+|+|+||+.+|++++++||+|++|||....+.++..|++.++++|+++.||||++
T Consensus 127 ~s~k~g~wnr~~~~G~el~GKTLgvlG~GrIGseVA~r~k~~gm~vI~~dpi~~~~~~~a~gvq~vsl~Eil~~ADFitl 206 (406)
T KOG0068|consen 127 ASMKEGKWNRVKYLGWELRGKTLGVLGLGRIGSEVAVRAKAMGMHVIGYDPITPMALAEAFGVQLVSLEEILPKADFITL 206 (406)
T ss_pred eeeecCceeecceeeeEEeccEEEEeecccchHHHHHHHHhcCceEEeecCCCchHHHHhccceeeeHHHHHhhcCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCccchhhcCCCcEEEcc
Q psy6348 159 HTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTP 238 (333)
Q Consensus 159 ~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~L~~~pnvi~TP 238 (333)
|+|++|+|++|++.+.|+.||+|..+||++||++||+++|.+||++|+++|||+|||+.||+..-..+.|.+||||++||
T Consensus 207 H~PLtP~T~~lin~~tfA~mKkGVriIN~aRGGvVDe~ALv~Al~sG~vaGaAlDVy~~Epp~~~~~~~Lv~hpnVi~Tp 286 (406)
T KOG0068|consen 207 HVPLTPSTEKLLNDETFAKMKKGVRIINVARGGVVDEPALVRALDSGQVAGAALDVYPEEPPKNGWDSELVSHPNVIVTP 286 (406)
T ss_pred ccCCCcchhhccCHHHHHHhhCCcEEEEecCCceechHHHHHHHhcCcccceeeecccCCCCccchhHHHhcCCceeecC
Confidence 99999999999999999999999999999999999999999999999999999999999998753346899999999999
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHhHcCCCCCCCCCCcccccccCcccCCCCCchHHHHHHHhHHHHHHhcCC--------
Q psy6348 239 HLGASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNAPALAASRNPENTSWISLARSLGKISSQLLQTS-------- 310 (333)
Q Consensus 239 Hi~~~t~ea~~~~~~~~~~~i~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~-------- 310 (333)
|+|++|.|+|.+++.++++++.+|.+| ...++||.|.++.+.+++.+||+.++|++|++.-|++.+.
T Consensus 287 HlgasT~EAq~~iaievaea~~~~~~~-----~~~g~Vna~~v~~~~l~~~~~~~~~a~~l~r~~~~~~~~~~~~~~~~~ 361 (406)
T KOG0068|consen 287 HLGASTEEAQSRIAIEVAEAVSDYING-----NSAGSVNAPEVALESLTELKPNIVLAEKLGRLVPGVLKGVNGVLSVHN 361 (406)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHhcc-----CccceechhhhhhhhhhccCchhHHHHHHhhhhHHHhcCCccceeeee
Confidence 999999999999999999999999999 4889999999999999999999999999999999998654
Q ss_pred ---CcCCcceeEeeeccCCcccCCC
Q psy6348 311 ---TFSSTAFSLVTQDITNVTSSTM 332 (333)
Q Consensus 311 ---~~~~~~~~~~~~~~~~~~~~~~ 332 (333)
.++...-.|+.++|++...|.+
T Consensus 362 ~~~s~~~~d~~~l~A~i~~~~~e~i 386 (406)
T KOG0068|consen 362 IYKSFSDGDIALLRADISKGIIEPI 386 (406)
T ss_pred hhhhccccceeeeHHHHhccCcchH
Confidence 3344566788999998877654
No 2
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=100.00 E-value=3.7e-75 Score=558.40 Aligned_cols=274 Identities=51% Similarity=0.794 Sum_probs=258.0
Q ss_pred CceEEEEeCCCCCCHHHhcccC-cceEEEcccCcCccChhhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccch
Q psy6348 1 KYDGLVVRSDTKVTAEVLQASN-LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQ 79 (333)
Q Consensus 1 ~~daliv~s~~~v~~~~l~~~~-Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~ 79 (333)
++|++++ +.++++++++++++ ||+|+++|+|+||||+++++++||.|+|+|++|+.+||||+++++|+++|+++.+++
T Consensus 45 ~~d~~~~-~~~~v~~~~l~~~~~Lk~I~~~g~Gvd~id~~~~~~~gi~V~nap~~na~~vAE~~~~~~L~~~R~~~~~~~ 123 (324)
T COG0111 45 DADALIV-SVTPVTEEVLAAAPNLKAIGRAGAGVDNIDLEAATKRGILVVNAPGGNAISVAELVLALLLALARRIPDADA 123 (324)
T ss_pred cCcEEEE-ecCCCCHHHHhhCCCceEEEEccccccccCHHHHhhcCCEEEeCCCcchHHHHHHHHHHHHHHhcCchhhHH
Confidence 5899999 89999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCcccccCCCccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCcc-ccChhhhccCCCEEEE
Q psy6348 80 SLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIA-SLGLEDIWPLADYITV 158 (333)
Q Consensus 80 ~~~~g~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~-~~~l~ell~~aDvV~l 158 (333)
++|+|.|+++.+.|.||.|||+||||+|+||+.+|+++++|||+|++|||+.+.+.....++. ..+|++++++||+|++
T Consensus 124 ~~~~g~W~~~~~~g~el~gkTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~~~~~~~~~~~~~Ld~lL~~sDiv~l 203 (324)
T COG0111 124 SQRRGEWDRKAFRGTELAGKTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRERAGVDGVVGVDSLDELLAEADILTL 203 (324)
T ss_pred HHHcCCccccccccccccCCEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchhhhccccceecccHHHHHhhCCEEEE
Confidence 999999999778899999999999999999999999999999999999998877655555554 4579999999999999
Q ss_pred ecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCccchhhcCCCcEEEcc
Q psy6348 159 HTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTP 238 (333)
Q Consensus 159 ~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~L~~~pnvi~TP 238 (333)
|+|+|++|+|||+++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||++.. +|||++|||++||
T Consensus 204 h~PlT~eT~g~i~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~G~i~gA~lDVf~~EPl~~~--~pL~~~pnV~~TP 281 (324)
T COG0111 204 HLPLTPETRGLINAEELAKMKPGAILINAARGGVVDEDALLAALDSGKIAGAALDVFEEEPLPAD--SPLWDLPNVILTP 281 (324)
T ss_pred cCCCCcchhcccCHHHHhhCCCCeEEEECCCcceecHHHHHHHHHcCCcceEEecCCCCCCCCCC--ChhhcCCCeEECC
Confidence 99999999999999999999999999999999999999999999999999999999999998764 7999999999999
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHhHcCCCCCCCCCCcccccccCc
Q psy6348 239 HLGASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNAPALAA 283 (333)
Q Consensus 239 Hi~~~t~ea~~~~~~~~~~~i~~~~~~~~~~~~~~~~vn~~~~~~ 283 (333)
|+||+|.|++.+++.++++|+.++..|+ ++.| |.|.++.
T Consensus 282 Hia~~T~ea~~~~~~~~~~~i~~~l~g~----~~~~--~~~~v~~ 320 (324)
T COG0111 282 HIGGSTDEAQERVAEIVAENIVRYLAGG----PVVN--NAPEVDL 320 (324)
T ss_pred cccccCHHHHHHHHHHHHHHHHHHHcCC----CCCC--Ccccccc
Confidence 9999999999999999999999999987 6656 6665543
No 3
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=100.00 E-value=2.6e-74 Score=585.88 Aligned_cols=303 Identities=53% Similarity=0.819 Sum_probs=289.6
Q ss_pred CceEEEEeCCCCCCHHHhcccC-cceEEEcccCcCccChhhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccch
Q psy6348 1 KYDGLVVRSDTKVTAEVLQASN-LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQ 79 (333)
Q Consensus 1 ~~daliv~s~~~v~~~~l~~~~-Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~ 79 (333)
++|++++++.+++++++|+++| ||+|+++|+|+||||+++|+++||.|+|+||+|+.+||||++++||+++|+++++++
T Consensus 40 ~~d~li~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~ 119 (525)
T TIGR01327 40 DYDALIVRSATKVTEEVIAAAPKLKVIGRAGVGVDNIDIEAATARGILVVNAPTGNTISAAEHALAMLLAAARNIPQADA 119 (525)
T ss_pred CCCEEEEcCCCCcCHHHHhhCCCceEEEECCcccchhcHHHHHHCCCEEEeCCCcChHHHHHHHHHHHHHHhcCHHHHHH
Confidence 5899999998999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCcccccCCCccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCcccc-ChhhhccCCCEEEE
Q psy6348 80 SLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASL-GLEDIWPLADYITV 158 (333)
Q Consensus 80 ~~~~g~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~-~l~ell~~aDvV~l 158 (333)
.+|+|+|.+..+.|.+|+|||+||||+|+||+.+|++|++|||+|++|||+.+.+.+.+.|+... +++|++++||+|++
T Consensus 120 ~~~~g~W~~~~~~g~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l 199 (525)
T TIGR01327 120 SLKEGEWDRKAFMGTELYGKTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISPERAEQLGVELVDDLDELLARADFITV 199 (525)
T ss_pred HHHcCCccccccCccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCChhHHHhcCCEEcCCHHHHHhhCCEEEE
Confidence 99999998876778999999999999999999999999999999999999876666677787765 89999999999999
Q ss_pred ecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCccchhhcCCCcEEEcc
Q psy6348 159 HTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTP 238 (333)
Q Consensus 159 ~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~L~~~pnvi~TP 238 (333)
|+|+|++|+++|+++.|++||+|++|||+|||++||++||++||++|+++||+||||++||+.+ +|||++|||++||
T Consensus 200 ~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~---~pL~~~~nvi~TP 276 (525)
T TIGR01327 200 HTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVRAAALDVFEKEPPTD---NPLFDLDNVIATP 276 (525)
T ss_pred ccCCChhhccCcCHHHHhcCCCCeEEEEcCCCceeCHHHHHHHHHcCCeeEEEEecCCCCCCCC---ChhhcCCCeEECC
Confidence 9999999999999999999999999999999999999999999999999999999999999653 6999999999999
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHhHcCCCCCCCCCCcccccccCcccCCCCCchHHHHHHHhHHHHHHhcCC
Q psy6348 239 HLGASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNAPALAASRNPENTSWISLARSLGKISSQLLQTS 310 (333)
Q Consensus 239 Hi~~~t~ea~~~~~~~~~~~i~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~ 310 (333)
|+|++|.|++.+++..+++|+.+|..|+ ++.|.||.|.++.+.+++++||++||++||+++.|+++++
T Consensus 277 Hia~~t~e~~~~~~~~~~~ni~~~~~g~----~~~~~vn~~~~~~~~~~~~~~~~~la~riG~~a~ql~~~~ 344 (525)
T TIGR01327 277 HLGASTREAQENVATQVAEQVLDALKGL----PVPNAVNAPGIDADVMEKLKPYLDLAEKLGKLAGQLLDGA 344 (525)
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHcCC----CCCceeeCCCCCchhhhhhhhHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999988887 7899999999999999999999999999999999998764
No 4
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=100.00 E-value=3.3e-73 Score=577.89 Aligned_cols=303 Identities=54% Similarity=0.862 Sum_probs=290.1
Q ss_pred CceEEEEeCCCCCCHHHhcccC-cceEEEcccCcCccChhhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccch
Q psy6348 1 KYDGLVVRSDTKVTAEVLQASN-LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQ 79 (333)
Q Consensus 1 ~~daliv~s~~~v~~~~l~~~~-Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~ 79 (333)
++|++|+++.+++++++++++| ||+|+++|+|+||||+++|+++||.|+|+|++|+.+||||++++||+++|+++++++
T Consensus 42 ~~d~~i~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~ 121 (526)
T PRK13581 42 DYDALIVRSATKVTAEVLEAAKNLKVIGRAGVGVDNVDVPAATRRGIIVVNAPTGNTISAAEHTIALMLALARNIPQAHA 121 (526)
T ss_pred CCCEEEEcCCCCCCHHHHhhCCCCeEEEECCcccccccHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHcCHHHHHH
Confidence 5899999988899999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCcccccCCCccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEe
Q psy6348 80 SLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVH 159 (333)
Q Consensus 80 ~~~~g~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~ 159 (333)
.+++|.|.+..+.|.+|.|||+||||+|+||+.+|+++++|||+|++|||+.+.+.....|++..+++|++++||+|++|
T Consensus 122 ~~~~g~W~~~~~~g~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDiV~l~ 201 (526)
T PRK13581 122 SLKAGKWERKKFMGVELYGKTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISPERAAQLGVELVSLDELLARADFITLH 201 (526)
T ss_pred HHHcCCCCccCccccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCChhHHHhcCCEEEcHHHHHhhCCEEEEc
Confidence 99999998766778999999999999999999999999999999999999876666667788878999999999999999
Q ss_pred cCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCccchhhcCCCcEEEccC
Q psy6348 160 TPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPH 239 (333)
Q Consensus 160 ~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~L~~~pnvi~TPH 239 (333)
+|+|++|+++++++.|++||+|++|||+|||++||++||++||++|+++||+||||++||+++ +|||++|||++|||
T Consensus 202 lP~t~~t~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~---~pL~~~~nvilTPH 278 (526)
T PRK13581 202 TPLTPETRGLIGAEELAKMKPGVRIINCARGGIIDEAALAEALKSGKVAGAALDVFEKEPPTD---SPLFELPNVVVTPH 278 (526)
T ss_pred cCCChHhhcCcCHHHHhcCCCCeEEEECCCCceeCHHHHHHHHhcCCeeEEEEecCCCCCCCC---chhhcCCCeeEcCc
Confidence 999999999999999999999999999999999999999999999999999999999999763 69999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhHcCCCCCCCCCCcccccccCcccCCCCCchHHHHHHHhHHHHHHhcCC
Q psy6348 240 LGASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNAPALAASRNPENTSWISLARSLGKISSQLLQTS 310 (333)
Q Consensus 240 i~~~t~ea~~~~~~~~~~~i~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~ 310 (333)
+|++|.|++.++++.+++|+.+|..|+ ++.|.||.|.++.+..++++||+.||+++|+++.|+++++
T Consensus 279 ia~~t~e~~~~~~~~~~~ni~~~~~g~----~~~~~vn~~~~~~~~~~~~~~~~~la~riG~~a~ql~~~~ 345 (526)
T PRK13581 279 LGASTAEAQENVAIQVAEQVIDALRGG----PVPNAVNLPSITAEEAEKLKPYLDLAEKLGSLAAQLADGP 345 (526)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHcCC----CcCceeeCCCCchhhhHHhHHHHHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999998887 7899999999999999999999999999999999998764
No 5
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=100.00 E-value=1.3e-70 Score=527.89 Aligned_cols=271 Identities=28% Similarity=0.463 Sum_probs=253.4
Q ss_pred CceEEEEeCCCCCCHHHhcccC-cceEEEcccCcCccChhhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccch
Q psy6348 1 KYDGLVVRSDTKVTAEVLQASN-LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQ 79 (333)
Q Consensus 1 ~~daliv~s~~~v~~~~l~~~~-Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~ 79 (333)
++|++|+++ .++++++++++| ||+|++.|+|+||||+++|+++||.|+|+|++|+.+||||++++||+++|+++.+++
T Consensus 45 ~ad~li~~~-~~~~~~~l~~~p~Lk~I~~~g~G~d~id~~~~~~~gI~V~n~~~~~~~~VAE~~~~l~L~~~R~i~~~~~ 123 (323)
T PRK15409 45 EAEGLLGSG-EKVDAALLEKMPKLRAASTISVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAE 123 (323)
T ss_pred CCeEEEEcC-CCCCHHHHhhCCCCeEEEECceecccccHHHHHHCCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHH
Confidence 579988764 589999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCccccc---CCCccccCCCEEEEEecChHHHHHHHHHh-hCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCE
Q psy6348 80 SLKEGKWDRK---LYTGTELYGKTLAVLGLGRIGREVALRMQ-AFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADY 155 (333)
Q Consensus 80 ~~~~g~w~~~---~~~g~~l~gktvGIIGlG~IG~~vA~~l~-~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDv 155 (333)
.+++|+|.+. .+.|.+|+|||+||||+|+||+.+|++++ +|||+|++|||+...+.....++++.++++++++||+
T Consensus 124 ~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~~~~~~~~~~~~~l~ell~~sDv 203 (323)
T PRK15409 124 RVKAGEWTASIGPDWFGTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDF 203 (323)
T ss_pred HHHcCCCcccCccccccCCCCCCEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCchhhHHhcCcEecCHHHHHHhCCE
Confidence 9999999743 23588999999999999999999999998 9999999999986555455667777899999999999
Q ss_pred EEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCccchhhcCCCcEE
Q psy6348 156 ITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVI 235 (333)
Q Consensus 156 V~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~L~~~pnvi 235 (333)
|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||++.+ +||+++|||+
T Consensus 204 v~lh~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~--~pL~~~~nvi 281 (323)
T PRK15409 204 VCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVD--SPLLSLPNVV 281 (323)
T ss_pred EEEeCCCChHHhhccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCC--chhhcCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999997543 6999999999
Q ss_pred EccCCCCCcHHHHHHHHHHHHHHHHHhHcCCCCCCCCCCcccc
Q psy6348 236 VTPHLGASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNA 278 (333)
Q Consensus 236 ~TPHi~~~t~ea~~~~~~~~~~~i~~~~~~~~~~~~~~~~vn~ 278 (333)
+|||+|++|.|++.+++..+++||.+|..|+ ++.+.||.
T Consensus 282 lTPHia~~t~e~~~~~~~~~~~ni~~~~~g~----~~~~~vn~ 320 (323)
T PRK15409 282 AVPHIGSATHETRYNMAACAVDNLIDALQGK----VEKNCVNP 320 (323)
T ss_pred EcCcCCCCcHHHHHHHHHHHHHHHHHHHcCC----CCCcccCc
Confidence 9999999999999999999999999998887 78899985
No 6
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=100.00 E-value=1.8e-69 Score=518.82 Aligned_cols=272 Identities=38% Similarity=0.613 Sum_probs=255.0
Q ss_pred CceEEEEeCCCCCCHHHhcccC-cceEEEcccCcCccChhhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccch
Q psy6348 1 KYDGLVVRSDTKVTAEVLQASN-LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQ 79 (333)
Q Consensus 1 ~~daliv~s~~~v~~~~l~~~~-Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~ 79 (333)
++|++++...+++++++++++| ||+|+..|+||||||+++|+++||.|+|+|++++.+||||+++|||++.|+++++++
T Consensus 44 ~~~~i~~~~~~~i~~~~l~~~p~LKlIa~~~~G~D~vDl~aa~~~gI~Vtnvp~~~t~sVAe~~~aLiLa~~R~~~~~~~ 123 (324)
T COG1052 44 DADAVITFVNDRIDAEVLEKLPGLKLIATRSAGYDNVDLEAAKERGITVTNVPGYSTEAVAEHAVALILALARRIHEGDR 123 (324)
T ss_pred CCcEEEEcCCCCcCHHHHHhCCCcEEEEEeccccCcccHHHHHHCCcEEEeCCCCCchHHHHHHHHHHHHHhhchHHHHH
Confidence 5799999878899999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCcccccC----CCccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCE
Q psy6348 80 SLKEGKWDRKL----YTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADY 155 (333)
Q Consensus 80 ~~~~g~w~~~~----~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDv 155 (333)
.+|+|.|.... ..|.+++|||+||||+|+||+++|+++++|||+|++|||+..++..+..+.++.+++|++++||+
T Consensus 124 ~~r~g~w~~~~~~~~~~~~~l~gktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~~~~~~~~~~~y~~l~ell~~sDi 203 (324)
T COG1052 124 RVREGNWSLSGGPDPLLGFDLRGKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPNPEAEKELGARYVDLDELLAESDI 203 (324)
T ss_pred HHhcCcccccCCcccccccCCCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCChHHHhhcCceeccHHHHHHhCCE
Confidence 99999998764 56889999999999999999999999999999999999988755556667888899999999999
Q ss_pred EEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCccchhhcCCCc--
Q psy6348 156 ITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPK-- 233 (333)
Q Consensus 156 V~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~L~~~pn-- 233 (333)
|++|||+|++|+|+|+++.|++||+|++|||+|||++||++||++||++|+|+||++|||+.||...+ +||++++|
T Consensus 204 i~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g~i~gaglDV~e~Ep~~~d--~~l~~l~~~~ 281 (324)
T COG1052 204 ISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGLVDEQALIDALKSGKIAGAGLDVFENEPALFD--HPLLRLDNFP 281 (324)
T ss_pred EEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCcceEEeeecCCCCCCCC--hhHhhccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999997532 57776666
Q ss_pred -EEEccCCCCCcHHHHHHHHHHHHHHHHHhHcCCCCCCCCCCcccc
Q psy6348 234 -VIVTPHLGASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNA 278 (333)
Q Consensus 234 -vi~TPHi~~~t~ea~~~~~~~~~~~i~~~~~~~~~~~~~~~~vn~ 278 (333)
|++|||+|+.|.|++.+|+..+++|+.++.+|+ .+.+.||.
T Consensus 282 ~vvltPHia~at~ea~~~m~~~~~~nl~~~~~g~----~~~~~v~~ 323 (324)
T COG1052 282 NVVLTPHIASATEEARKAMAELALENLEAFFDGG----VPPNEVNP 323 (324)
T ss_pred CEEEccccccccHHHHHHHHHHHHHHHHHHHcCC----CCCCCCCC
Confidence 999999999999999999999999999988877 67788774
No 7
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=100.00 E-value=2.8e-68 Score=526.43 Aligned_cols=285 Identities=34% Similarity=0.516 Sum_probs=260.6
Q ss_pred CceEEEEeCCCCCCHHHhcccC-cceEEEcccCcCccChhhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccch
Q psy6348 1 KYDGLVVRSDTKVTAEVLQASN-LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQ 79 (333)
Q Consensus 1 ~~daliv~s~~~v~~~~l~~~~-Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~ 79 (333)
++|++++++.+++++++|+++| ||+|+++|+|+||||+++|+++||.|+|+||+|+.+||||++++||+++|+++++++
T Consensus 53 ~~d~l~~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~pg~~~~aVAE~~i~l~L~~~R~~~~~~~ 132 (409)
T PRK11790 53 DAHFIGIRSRTQLTEEVLAAAEKLVAIGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNA 132 (409)
T ss_pred CCCEEEEeCCCCCCHHHHhhCCCCeEEEECceecccccHHHHHhCCCEEEeCCCCChHHHHHHHHHHHHHHHcChHHHHH
Confidence 5799999988899999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCcccccCCCccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCcccc-ChhhhccCCCEEEE
Q psy6348 80 SLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASL-GLEDIWPLADYITV 158 (333)
Q Consensus 80 ~~~~g~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~-~l~ell~~aDvV~l 158 (333)
.+++|.|.+..+.|.+|.|||+||||+|+||+.+|+++++|||+|++|||+.... ..++... +++|++++||+|++
T Consensus 133 ~~~~g~w~~~~~~~~~L~gktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~~---~~~~~~~~~l~ell~~sDiVsl 209 (409)
T PRK11790 133 KAHRGGWNKSAAGSFEVRGKTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKLP---LGNARQVGSLEELLAQSDVVSL 209 (409)
T ss_pred HHHcCcccccccCcccCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCcccc---cCCceecCCHHHHHhhCCEEEE
Confidence 9999999876667899999999999999999999999999999999999864221 1234443 89999999999999
Q ss_pred ecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCC--ccchhhcCCCcEEE
Q psy6348 159 HTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKS--EQTFELIKHPKVIV 236 (333)
Q Consensus 159 ~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~--~~~~~L~~~pnvi~ 236 (333)
|+|+|++|+++|+++.|++||+|++|||+|||++||++||++||++|+++||+||||++||++. +..+||+++|||++
T Consensus 210 h~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDVf~~EP~~~~~~~~~pL~~~~nvil 289 (409)
T PRK11790 210 HVPETPSTKNMIGAEELALMKPGAILINASRGTVVDIDALADALKSGHLAGAAIDVFPVEPKSNGDPFESPLRGLDNVIL 289 (409)
T ss_pred cCCCChHHhhccCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHcCCceEEEEcCCCCCCCCccccccchhhcCCCEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999653 22469999999999
Q ss_pred ccCCCCCcHHHHHHHHHHHHHHHHHhHcCCCCCCCCCCcccccccCcc---------cCCCCCch
Q psy6348 237 TPHLGASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNAPALAAS---------RNPENTSW 292 (333)
Q Consensus 237 TPHi~~~t~ea~~~~~~~~~~~i~~~~~~~~~~~~~~~~vn~~~~~~~---------~~~~~~~~ 292 (333)
|||+|++|.|++.++++.+++|+.+|..|+ .+.+.||.|.+... ..++.+|.
T Consensus 290 TPHia~~t~ea~~~~~~~~~~nl~~~~~~~----~~~~~vn~~~~~~~~~~~~~rlii~h~d~pG 350 (409)
T PRK11790 290 TPHIGGSTQEAQENIGLEVAGKLVKYSDNG----STLSAVNFPEVSLPEHPGGHRLLHIHENRPG 350 (409)
T ss_pred CCcCCCCHHHHHHHHHHHHHHHHHHHHcCC----CcCcceeccccccCCCCCCceEEEEeCCCCC
Confidence 999999999999999999999999988877 79999998865543 23467777
No 8
>PRK13243 glyoxylate reductase; Reviewed
Probab=100.00 E-value=5.6e-68 Score=512.01 Aligned_cols=274 Identities=34% Similarity=0.574 Sum_probs=256.2
Q ss_pred CceEEEEeCCCCCCHHHhcccC-cceEEEcccCcCccChhhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccch
Q psy6348 1 KYDGLVVRSDTKVTAEVLQASN-LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQ 79 (333)
Q Consensus 1 ~~daliv~s~~~v~~~~l~~~~-Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~ 79 (333)
++|++|+++.+++++++++++| ||+|++.|+|+||||+++|+++||.|+|+||+|+.+||||++++||+++|+++.+++
T Consensus 45 ~~d~~i~~~~~~~~~~~l~~~p~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~ 124 (333)
T PRK13243 45 DVDALVTMLSERIDCEVFEAAPRLRIVANYAVGYDNIDVEEATRRGIYVTNTPGVLTEATADFAWALLLATARRLVEADH 124 (333)
T ss_pred CCcEEEEeCCCCCCHHHHhhCCCCeEEEecCccccccCHHHHHHcCCEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHH
Confidence 5799999877799999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCccccc-------CCCccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccC
Q psy6348 80 SLKEGKWDRK-------LYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPL 152 (333)
Q Consensus 80 ~~~~g~w~~~-------~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~ 152 (333)
.+++|.|.+. .+.|.+|.||||||||+|+||+.+|++|++|||+|++|||+.........++...++++++++
T Consensus 125 ~~~~g~W~~~~~~~~~~~~~g~~L~gktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~l~ell~~ 204 (333)
T PRK13243 125 FVRSGEWKRRGVAWHPLMFLGYDVYGKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEAEKELGAEYRPLEELLRE 204 (333)
T ss_pred HHHcCCCCccccccccccccccCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChhhHHHcCCEecCHHHHHhh
Confidence 9999999742 125789999999999999999999999999999999999987554445567777799999999
Q ss_pred CCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCccchhhcCCC
Q psy6348 153 ADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHP 232 (333)
Q Consensus 153 aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~L~~~p 232 (333)
||+|++|+|++++|+++|+++.|+.||+|++|||+|||+++|+++|+++|++|+|+||+||||++||+++ +|||++|
T Consensus 205 aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~gAaLDV~~~EP~~~---~pL~~~~ 281 (333)
T PRK13243 205 SDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTARGKVVDTKALVKALKEGWIAGAGLDVFEEEPYYN---EELFSLK 281 (333)
T ss_pred CCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHHcCCeEEEEeccCCCCCCCC---chhhcCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999763 6999999
Q ss_pred cEEEccCCCCCcHHHHHHHHHHHHHHHHHhHcCCCCCCCCCCccccccc
Q psy6348 233 KVIVTPHLGASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNAPAL 281 (333)
Q Consensus 233 nvi~TPHi~~~t~ea~~~~~~~~~~~i~~~~~~~~~~~~~~~~vn~~~~ 281 (333)
||++|||+|++|.|++.++...+++|+.+|..|+ ++.|.||...+
T Consensus 282 nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~----~~~~~v~~~~~ 326 (333)
T PRK13243 282 NVVLAPHIGSATFEAREGMAELVAENLIAFKRGE----VPPTLVNREVV 326 (333)
T ss_pred CEEECCcCCcCHHHHHHHHHHHHHHHHHHHHcCC----CCCcccCHHHH
Confidence 9999999999999999999999999999998887 78899997653
No 9
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=100.00 E-value=6.3e-68 Score=507.27 Aligned_cols=259 Identities=29% Similarity=0.435 Sum_probs=239.8
Q ss_pred CceEEEEeCCCCCCHHHhcccC-cceEEEcccCcCccChhhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccch
Q psy6348 1 KYDGLVVRSDTKVTAEVLQASN-LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQ 79 (333)
Q Consensus 1 ~~daliv~s~~~v~~~~l~~~~-Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~ 79 (333)
++|+++++ .+++++++|+++| ||+|++.|+|+||||+++|+++||.|+|+||+|+.+||||++++||+++|+++.+++
T Consensus 42 ~~d~ii~~-~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~~~VAE~a~~l~L~~~R~~~~~~~ 120 (311)
T PRK08410 42 DANIIITN-KVVIDKEVLSQLPNLKLICITATGTNNVDIEYAKKKGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDR 120 (311)
T ss_pred CCCEEEEC-CCCCCHHHHhhCCCCeEEEEcccccccccHHHHHhCCCEEEcCCCCCChHHHHHHHHHHHHHHhCHHHHHH
Confidence 57888876 5789999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCcccccCC------CccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCC
Q psy6348 80 SLKEGKWDRKLY------TGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLA 153 (333)
Q Consensus 80 ~~~~g~w~~~~~------~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~a 153 (333)
.+|+|.|.+... .+.+|+|||+||||+|+||+.+|+++++|||+|++|||+.... ..++++.++++++++|
T Consensus 121 ~~~~g~w~~~~~~~~~~~~~~~L~gktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~---~~~~~~~~l~ell~~s 197 (311)
T PRK08410 121 YVKSGEYSESPIFTHISRPLGEIKGKKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNK---NEEYERVSLEELLKTS 197 (311)
T ss_pred HHHcCCCCcCCCccccCccccccCCCEEEEECCCHHHHHHHHHHhhcCCEEEEECCCcccc---ccCceeecHHHHhhcC
Confidence 999999975321 2579999999999999999999999999999999999975321 2356677999999999
Q ss_pred CEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCccchhhcCC--
Q psy6348 154 DYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKH-- 231 (333)
Q Consensus 154 DvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~L~~~-- 231 (333)
|+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||++||++|+|+ |+||||++||++.. +||+.+
T Consensus 198 Dvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i~-AaLDV~~~EP~~~~--~pL~~~~~ 274 (311)
T PRK08410 198 DIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALDEKDIY-AGLDVLEKEPMEKN--HPLLSIKN 274 (311)
T ss_pred CEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCeE-EEEecCCCCCCCCC--ChhhccCC
Confidence 9999999999999999999999999999999999999999999999999999999 99999999997643 688886
Q ss_pred -CcEEEccCCCCCcHHHHHHHHHHHHHHHHHhHcCC
Q psy6348 232 -PKVIVTPHLGASTKEAQIRVAVEIAEQFIALANTN 266 (333)
Q Consensus 232 -pnvi~TPHi~~~t~ea~~~~~~~~~~~i~~~~~~~ 266 (333)
|||++|||+|++|.|++.++...+++|+.+|.+|+
T Consensus 275 ~~NvilTPH~a~~t~e~~~~~~~~~~~nl~~~~~g~ 310 (311)
T PRK08410 275 KEKLLITPHIAWASKEARKTLIEKVKENIKDFLEGG 310 (311)
T ss_pred CCCEEECCccccCCHHHHHHHHHHHHHHHHHHHcCC
Confidence 89999999999999999999999999999988774
No 10
>PRK06487 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=9.5e-68 Score=507.25 Aligned_cols=264 Identities=36% Similarity=0.518 Sum_probs=242.5
Q ss_pred CceEEEEeCCCCCCHHHhcccC-cceEEEcccCcCccChhhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccch
Q psy6348 1 KYDGLVVRSDTKVTAEVLQASN-LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQ 79 (333)
Q Consensus 1 ~~daliv~s~~~v~~~~l~~~~-Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~ 79 (333)
++|+++++ .+++++++++++| ||+|++.|+|+||||+++|.++||.|+|+||+|+.+||||++++||+++|+++++++
T Consensus 45 ~~d~~i~~-~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~ 123 (317)
T PRK06487 45 GAQVAISN-KVALDAAALAAAPQLKLILVAATGTNNVDLAAARERGITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQ 123 (317)
T ss_pred CCeEEEEe-CCCCCHHHHhhCCCCeEEEEcCccccccCHHHHHHCCCEEEeCCCCCcchHHHHHHHHHHHHHcCHHHHHH
Confidence 57888765 4689999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCcccccC------CCccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCC
Q psy6348 80 SLKEGKWDRKL------YTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLA 153 (333)
Q Consensus 80 ~~~~g~w~~~~------~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~a 153 (333)
.+++|.|.+.. +.+.+|+|||+||||+|+||+.+|+++++|||+|++||++.... ....+++++++++|
T Consensus 124 ~~~~g~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~~-----~~~~~~l~ell~~s 198 (317)
T PRK06487 124 AVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRPA-----RPDRLPLDELLPQV 198 (317)
T ss_pred HHHcCCCccCcccccccCcccccCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCcc-----cccccCHHHHHHhC
Confidence 99999997542 23579999999999999999999999999999999999864321 23456899999999
Q ss_pred CEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCccchhhcC--C
Q psy6348 154 DYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIK--H 231 (333)
Q Consensus 154 DvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~L~~--~ 231 (333)
|+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||++||++|+++||+||||++||++.+ +|||. +
T Consensus 199 Div~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~--~pl~~~~~ 276 (317)
T PRK06487 199 DALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGLVDEQALADALRSGHLGGAATDVLSVEPPVNG--NPLLAPDI 276 (317)
T ss_pred CEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCC--CchhhcCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999997643 68995 8
Q ss_pred CcEEEccCCCCCcHHHHHHHHHHHHHHHHHhHcCCCCCCCCCCccc
Q psy6348 232 PKVIVTPHLGASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLN 277 (333)
Q Consensus 232 pnvi~TPHi~~~t~ea~~~~~~~~~~~i~~~~~~~~~~~~~~~~vn 277 (333)
|||++|||+|++|.|++.+++..+++||.+|..|+ +.+.||
T Consensus 277 pnvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~-----~~~~v~ 317 (317)
T PRK06487 277 PRLIVTPHSAWGSREARQRIVGQLAENARAFFAGK-----PLRVVS 317 (317)
T ss_pred CCEEECCccccCCHHHHHHHHHHHHHHHHHHHcCC-----CCcCCC
Confidence 99999999999999999999999999999999886 445554
No 11
>PLN02306 hydroxypyruvate reductase
Probab=100.00 E-value=2.3e-66 Score=508.19 Aligned_cols=272 Identities=29% Similarity=0.372 Sum_probs=248.6
Q ss_pred CceEEEEeCCCCCCHHHhcccC---cceEEEcccCcCccChhhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCcc
Q psy6348 1 KYDGLVVRSDTKVTAEVLQASN---LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQG 77 (333)
Q Consensus 1 ~~daliv~s~~~v~~~~l~~~~---Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~ 77 (333)
++|+++++..+++++++|++++ ||+|++.|+|+||||+++|+++||.|+|+||+++.+||||++++||+++|+++.+
T Consensus 62 ~~d~vi~~~~~~i~~~~l~~~~~l~lk~I~~~~~G~D~iD~~aa~~~gI~V~n~pg~~~~~VAE~al~liLal~R~i~~~ 141 (386)
T PLN02306 62 KCDGVIGQLTEDWGETLFSALSKAGGKAFSNMAVGYNNVDVEAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEA 141 (386)
T ss_pred CCcEEEEcCCCCcCHHHHHhCCcCCceEEEECCcccccccHHHHHHCCCEEEECCCcCHHHHHHHHHHHHHHHHhChHHH
Confidence 4799999887899999999987 5999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhcCccccc---CCCccccCCCEEEEEecChHHHHHHHHHh-hCCCEEEEEcCCCCHHHH---HhcC----------
Q psy6348 78 CQSLKEGKWDRK---LYTGTELYGKTLAVLGLGRIGREVALRMQ-AFGMKVIGFDPMVSVEDA---AKLN---------- 140 (333)
Q Consensus 78 ~~~~~~g~w~~~---~~~g~~l~gktvGIIGlG~IG~~vA~~l~-~~G~~V~~~d~~~~~~~a---~~~g---------- 140 (333)
++.+++|.|.+. .+.|.+|.|||+||||+|+||+.+|++++ +|||+|++|||+...+.. ...+
T Consensus 142 ~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~ 221 (386)
T PLN02306 142 DEFMRAGLYEGWLPHLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQP 221 (386)
T ss_pred HHHHHcCCCccccccccCCcCCCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhccccccccccc
Confidence 999999988532 23578999999999999999999999985 999999999998643221 1122
Q ss_pred --ccc-cChhhhccCCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCC
Q psy6348 141 --IAS-LGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCE 217 (333)
Q Consensus 141 --v~~-~~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~ 217 (333)
++. .+++|++++||+|++|+|+|++|++||+++.|++||+|++|||+|||++||++||++||++|+++||+||||++
T Consensus 222 ~~~~~~~~L~ell~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i~gAaLDVf~~ 301 (386)
T PLN02306 222 VTWKRASSMEEVLREADVISLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFED 301 (386)
T ss_pred ccccccCCHHHHHhhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCeeEEEEeCCCC
Confidence 222 48999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccchhhcCCCcEEEccCCCCCcHHHHHHHHHHHHHHHHHhHcCCCCCCCCCCccccc
Q psy6348 218 EPPKSEQTFELIKHPKVIVTPHLGASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNAP 279 (333)
Q Consensus 218 EP~~~~~~~~L~~~pnvi~TPHi~~~t~ea~~~~~~~~~~~i~~~~~~~~~~~~~~~~vn~~ 279 (333)
||+++ +||+++|||++|||+|++|.++++++...+++|+.++.+|+ ++.|.||++
T Consensus 302 EP~~~---~~L~~~pNVilTPHiag~T~e~~~~~~~~~~~ni~~~~~g~----~~~~~~~~~ 356 (386)
T PLN02306 302 EPYMK---PGLADMKNAVVVPHIASASKWTREGMATLAALNVLGKLKGY----PVWGDPNRV 356 (386)
T ss_pred CCCCc---chHhhCCCEEECCccccCcHHHHHHHHHHHHHHHHHHHcCC----CCcccccch
Confidence 99754 58999999999999999999999999999999999998888 899999943
No 12
>PRK06932 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=2.9e-66 Score=496.32 Aligned_cols=259 Identities=32% Similarity=0.462 Sum_probs=237.0
Q ss_pred CceEEEEeCCCCCCHHHhcccC-cceEEEcccCcCccChhhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccch
Q psy6348 1 KYDGLVVRSDTKVTAEVLQASN-LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQ 79 (333)
Q Consensus 1 ~~daliv~s~~~v~~~~l~~~~-Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~ 79 (333)
++|++++ +.+++++++++++| ||+|++.|+|+||||+++|.++||.|+|+||+|+.+||||++++||+++|+++.+++
T Consensus 44 ~~d~ii~-~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~i~l~l~~~R~~~~~~~ 122 (314)
T PRK06932 44 DADIVIT-SKVLFTRETLAQLPKLKLIAITATGTNNVDLVAAKELGIAVKNVTGYSSTTVPEHVLGMIFALKHSLMGWYR 122 (314)
T ss_pred CCcEEEE-eCCCCCHHHHhhCcCCeEEEEecccccccCHHHHHhCCCEEEeCCCCChhHHHHHHHHHHHHHHhChHHHHH
Confidence 5788766 46789999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCcccccC------CCccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCC
Q psy6348 80 SLKEGKWDRKL------YTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLA 153 (333)
Q Consensus 80 ~~~~g~w~~~~------~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~a 153 (333)
.+++|.|.+.. +.+.+|+|||+||||+|+||+.+|+++++|||+|++||+..... ....+.++++++++|
T Consensus 123 ~~~~~~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~~----~~~~~~~l~ell~~s 198 (314)
T PRK06932 123 DQLSDRWATCKQFCYFDYPITDVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGASV----CREGYTPFEEVLKQA 198 (314)
T ss_pred HHHcCCCCcCccccccCCcccccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCcccc----cccccCCHHHHHHhC
Confidence 99999997531 23579999999999999999999999999999999999864211 122356899999999
Q ss_pred CEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCccchhhc----
Q psy6348 154 DYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELI---- 229 (333)
Q Consensus 154 DvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~L~---- 229 (333)
|+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||++.+ +|||
T Consensus 199 Div~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g~i~gAaLDV~~~EP~~~~--~pl~~~~~ 276 (314)
T PRK06932 199 DIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALENGKIAGAALDVLVKEPPEKD--NPLIQAAK 276 (314)
T ss_pred CEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCccEEEEecCCCCCCCCC--ChhhHhhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999996543 5777
Q ss_pred CCCcEEEccCCCCCcHHHHHHHHHHHHHHHHHhHcCC
Q psy6348 230 KHPKVIVTPHLGASTKEAQIRVAVEIAEQFIALANTN 266 (333)
Q Consensus 230 ~~pnvi~TPHi~~~t~ea~~~~~~~~~~~i~~~~~~~ 266 (333)
++|||++|||+|++|.|+++++...+++||.+|..|+
T Consensus 277 ~~pnvilTPHia~~t~e~~~~~~~~~~~ni~~~~~~g 313 (314)
T PRK06932 277 RLPNLLITPHIAWASDSAVTTLVNKVAQNIEEFVQQG 313 (314)
T ss_pred CCCCEEECCccccCcHHHHHHHHHHHHHHHHHHHhcC
Confidence 5999999999999999999999999999999977664
No 13
>PLN03139 formate dehydrogenase; Provisional
Probab=100.00 E-value=1.6e-65 Score=501.19 Aligned_cols=273 Identities=30% Similarity=0.464 Sum_probs=250.0
Q ss_pred CceEEEEeC--CCCCCHHHhcccC-cceEEEcccCcCccChhhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCcc
Q psy6348 1 KYDGLVVRS--DTKVTAEVLQASN-LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQG 77 (333)
Q Consensus 1 ~~daliv~s--~~~v~~~~l~~~~-Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~ 77 (333)
++|++|+.. .+++++++|+++| ||+|+++|+|+||||+++|+++||.|+|+||+|+.+||||++++||++.|++.++
T Consensus 97 dadili~~~~~~~~~~~e~l~~ap~LK~I~~~g~G~D~iDl~aa~~~gI~V~n~~g~na~sVAE~al~liL~l~R~~~~~ 176 (386)
T PLN03139 97 DLHVLITTPFHPAYVTAERIKKAKNLELLLTAGIGSDHIDLPAAAAAGLTVAEVTGSNVVSVAEDELMRILILLRNFLPG 176 (386)
T ss_pred CCeEEEEcCccCCCCCHHHHhhCCCccEEEECCccccccCHHHHHHCCeEEEECCCcCcHHHHHHHHHHHHHHHcCcHHH
Confidence 579988864 2579999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhcCccccc--CCCccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHhcCcccc-ChhhhccCC
Q psy6348 78 CQSLKEGKWDRK--LYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV-SVEDAAKLNIASL-GLEDIWPLA 153 (333)
Q Consensus 78 ~~~~~~g~w~~~--~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~gv~~~-~l~ell~~a 153 (333)
++.+++|.|... ...+.+|.||||||||+|+||+.+|++|++|||+|++||++. ..+...+.|+... ++++++++|
T Consensus 177 ~~~~~~g~W~~~~~~~~~~~L~gktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~s 256 (386)
T PLN03139 177 YHQVVSGEWNVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKETGAKFEEDLDAMLPKC 256 (386)
T ss_pred HHHHHhCCCccccccCCCcCCCCCEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHhhcCceecCCHHHHHhhC
Confidence 999999999753 235789999999999999999999999999999999999975 3444456677665 899999999
Q ss_pred CEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCccchhhcCCCc
Q psy6348 154 DYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPK 233 (333)
Q Consensus 154 DvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~L~~~pn 233 (333)
|+|++|+|++++|+++|+++.|+.||+|++|||++||++||+++|++||++|+|+||++|||++||++.+ +|||.+||
T Consensus 257 DvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~l~GAaLDV~~~EPlp~d--~pL~~~pN 334 (386)
T PLN03139 257 DVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACSSGHIGGYGGDVWYPQPAPKD--HPWRYMPN 334 (386)
T ss_pred CEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHcCCceEEEEcCCCCCCCCCC--ChhhcCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999997643 79999999
Q ss_pred EEEccCCCCCcHHHHHHHHHHHHHHHHHhHcCCCCCCCCCCccc
Q psy6348 234 VIVTPHLGASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLN 277 (333)
Q Consensus 234 vi~TPHi~~~t~ea~~~~~~~~~~~i~~~~~~~~~~~~~~~~vn 277 (333)
|++|||+||.|.+++.+++..+++|+.+|..|++. ++.+.+.
T Consensus 335 vilTPHiag~t~~~~~r~~~~~~~nl~~~~~G~~~--~~~~~i~ 376 (386)
T PLN03139 335 HAMTPHISGTTIDAQLRYAAGVKDMLDRYFKGEDF--PAQNYIV 376 (386)
T ss_pred eEEcccccccCHHHHHHHHHHHHHHHHHHHcCCCC--CCcceee
Confidence 99999999999999999999999999999888743 3444443
No 14
>PRK07574 formate dehydrogenase; Provisional
Probab=100.00 E-value=2.9e-65 Score=499.66 Aligned_cols=264 Identities=31% Similarity=0.478 Sum_probs=246.2
Q ss_pred CceEEEEeC--CCCCCHHHhcccC-cceEEEcccCcCccChhhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCcc
Q psy6348 1 KYDGLVVRS--DTKVTAEVLQASN-LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQG 77 (333)
Q Consensus 1 ~~daliv~s--~~~v~~~~l~~~~-Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~ 77 (333)
++|++|+++ .+++++++|+++| ||+|+++|+|+||||+++|+++||.|+|+|++|+.+||||++++||++.|++..+
T Consensus 90 dadili~~~~~~~~~~~e~l~~~p~LK~I~~~g~G~D~id~~aa~~~gI~V~n~~g~~a~~VAE~al~l~L~l~R~~~~~ 169 (385)
T PRK07574 90 DADVVISQPFWPAYLTAERIAKAPNLKLAITAGIGSDHVDLQAASEHGITVAEVTGSNSISVAEHVVMMILALVRNYEPS 169 (385)
T ss_pred CCeEEEEecCCCCCCCHHHHhhCCCCcEEEECCcccccccHHHHHHCCcEEEcCCCCchHHHHHHHHHHHHHHHcCHHHH
Confidence 579998864 3689999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhcCcccccC--CCccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHhcCccc-cChhhhccCC
Q psy6348 78 CQSLKEGKWDRKL--YTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV-SVEDAAKLNIAS-LGLEDIWPLA 153 (333)
Q Consensus 78 ~~~~~~g~w~~~~--~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~gv~~-~~l~ell~~a 153 (333)
++.+++|.|.+.. ..+.+|+||||||||+|+||+.+|++|++|||+|++|||+. ..+.....|++. .+++|++++|
T Consensus 170 ~~~~~~g~W~~~~~~~~~~~L~gktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~a 249 (385)
T PRK07574 170 HRQAVEGGWNIADCVSRSYDLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQELGLTYHVSFDSLVSVC 249 (385)
T ss_pred HHHHHhCCCCcccccccceecCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHhhcCceecCCHHHHhhcC
Confidence 9999999998643 24789999999999999999999999999999999999986 334445567764 5899999999
Q ss_pred CEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCccchhhcCCCc
Q psy6348 154 DYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPK 233 (333)
Q Consensus 154 DvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~L~~~pn 233 (333)
|+|++|+|+|++|+++|+++.|++||+|++|||+|||+++|+++|++||++|+|+||++|||++||++.+ +|||++||
T Consensus 250 DvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~i~GAaLDV~~~EPlp~d--~pL~~~pN 327 (385)
T PRK07574 250 DVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALESGHLAGYAGDVWFPQPAPAD--HPWRTMPR 327 (385)
T ss_pred CEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHhCCccEEEEecCCCCCCCCC--ChHHhCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999997643 79999999
Q ss_pred EEEccCCCCCcHHHHHHHHHHHHHHHHHhHcCC
Q psy6348 234 VIVTPHLGASTKEAQIRVAVEIAEQFIALANTN 266 (333)
Q Consensus 234 vi~TPHi~~~t~ea~~~~~~~~~~~i~~~~~~~ 266 (333)
|++|||+|++|.|++.+++..+++||.+|..|+
T Consensus 328 vilTPHiag~T~e~~~~~~~~~~~ni~~~~~G~ 360 (385)
T PRK07574 328 NGMTPHISGTTLSAQARYAAGTREILECFFEGR 360 (385)
T ss_pred eEECCccccCcHHHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999998887
No 15
>PLN02928 oxidoreductase family protein
Probab=100.00 E-value=1.3e-63 Score=483.89 Aligned_cols=261 Identities=30% Similarity=0.477 Sum_probs=239.6
Q ss_pred CceEEEEeCCCCCCHHHhcccC-cceEEEcccCcCccChhhHhhCCcEEEECCCC---CchHHHHHHHHHHHHHhcCCCc
Q psy6348 1 KYDGLVVRSDTKVTAEVLQASN-LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGG---NFISACELTCSLISALSRNVPQ 76 (333)
Q Consensus 1 ~~daliv~s~~~v~~~~l~~~~-Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~---n~~avAE~~l~l~l~~~R~i~~ 76 (333)
++|+++++ ..++++++|+.+| ||+|++.|+|+|+||+++|.++||.|+|+|++ |+.+||||+++++|+++|+++.
T Consensus 61 ~~d~~i~~-~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~av~l~L~~~R~~~~ 139 (347)
T PLN02928 61 NYDICVPK-MMRLDADIIARASQMKLIMQFGVGLEGVDVDAATKHGIKVARIPSEGTGNAASCAEMAIYLMLGLLRKQNE 139 (347)
T ss_pred CCcEEEEC-CCCCCHHHHhcCCCceEEEECCcccCcCcHHHHHhCCCEEEECCCCCCcChHHHHHHHHHHHHHHHhCHHH
Confidence 57888776 4589999999999 99999999999999999999999999999974 8899999999999999999999
Q ss_pred cchhhhcCcccccCCCccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHh-------------cCccc
Q psy6348 77 GCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAK-------------LNIAS 143 (333)
Q Consensus 77 ~~~~~~~g~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~-------------~gv~~ 143 (333)
+++.+++|.|.+ ..+.+|+|||+||||+|+||+.+|++|++|||+|++|||+...+.... .+...
T Consensus 140 ~~~~~~~~~w~~--~~~~~l~gktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (347)
T PLN02928 140 MQISLKARRLGE--PIGDTLFGKTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGH 217 (347)
T ss_pred HHHHHHcCCccc--ccccCCCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccCcc
Confidence 999999999965 357899999999999999999999999999999999999753322211 11245
Q ss_pred cChhhhccCCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCc
Q psy6348 144 LGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSE 223 (333)
Q Consensus 144 ~~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~ 223 (333)
.++++++++||+|++|+|+|++|+++|+++.|+.||+|++|||+|||++||++||++||++|+|+||+||||++||++.+
T Consensus 218 ~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV~~~EP~~~~ 297 (347)
T PLN02928 218 EDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVAWSEPFDPD 297 (347)
T ss_pred cCHHHHHhhCCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEEccCCCCCCCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999996543
Q ss_pred cchhhcCCCcEEEccCCCCCcHHHHHHHHHHHHHHHHHhHcCC
Q psy6348 224 QTFELIKHPKVIVTPHLGASTKEAQIRVAVEIAEQFIALANTN 266 (333)
Q Consensus 224 ~~~~L~~~pnvi~TPHi~~~t~ea~~~~~~~~~~~i~~~~~~~ 266 (333)
+|||++|||++|||+|++|.+++.+++..+++|+.+|..|+
T Consensus 298 --~pL~~~~nviiTPHia~~t~~~~~~~~~~~~~nl~~~~~g~ 338 (347)
T PLN02928 298 --DPILKHPNVIITPHVAGVTEYSYRSMGKIVGDAALQLHAGR 338 (347)
T ss_pred --ChhhcCCCEEECCcCCCChHHHHHHHHHHHHHHHHHHHCCC
Confidence 69999999999999999999999999999999999999887
No 16
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=100.00 E-value=2.2e-62 Score=472.29 Aligned_cols=270 Identities=23% Similarity=0.376 Sum_probs=244.2
Q ss_pred CceEEEEeCCCCCCHHHhcccC---cceEEEcccCcCccChhhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCcc
Q psy6348 1 KYDGLVVRSDTKVTAEVLQASN---LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQG 77 (333)
Q Consensus 1 ~~daliv~s~~~v~~~~l~~~~---Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~ 77 (333)
++|++++.+.+++++++++++| ||+|++.|+|+||||+++|+++||.|+|+|++|+.+||||++++||++.|+++.+
T Consensus 45 ~~d~ii~~~~~~~~~~~l~~~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~~~l~L~~~R~~~~~ 124 (330)
T PRK12480 45 DYDGVTTMQFGKLENDVYPKLESYGIKQIAQRTAGFDMYDLDLAKKHNIVISNVPSYSPETIAEYSVSIALQLVRRFPDI 124 (330)
T ss_pred CCCEEEEecCCCCCHHHHHhhhhcCceEEEecccccchhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHHhHHHH
Confidence 5899999877799999999984 9999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhcCccccc-CCCccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccc-cChhhhccCCCE
Q psy6348 78 CQSLKEGKWDRK-LYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIAS-LGLEDIWPLADY 155 (333)
Q Consensus 78 ~~~~~~g~w~~~-~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~-~~l~ell~~aDv 155 (333)
++.+++|.|... ...+.+|+|++|||||+|+||+.+|++|++|||+|++||++..... . .... .++++++++||+
T Consensus 125 ~~~~~~~~~~w~~~~~~~~l~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~--~-~~~~~~~l~ell~~aDi 201 (330)
T PRK12480 125 ERRVQAHDFTWQAEIMSKPVKNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDL--D-FLTYKDSVKEAIKDADI 201 (330)
T ss_pred HHHHHhCCcccccccCccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhh--h-hhhccCCHHHHHhcCCE
Confidence 999999976432 2457899999999999999999999999999999999999763321 1 1223 379999999999
Q ss_pred EEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCC-----------Ccc
Q psy6348 156 ITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPK-----------SEQ 224 (333)
Q Consensus 156 V~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~-----------~~~ 224 (333)
|++|+|++++|+++++++.|++||+|++|||+|||.+||+++|++||++|+++||+||||++||+. ++.
T Consensus 202 Vil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~~~~~~~~~ 281 (330)
T PRK12480 202 ISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLLGAAIDTYENEAAYFTNDWTNKDIDDKT 281 (330)
T ss_pred EEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHcCCeeEEEEeccCCCCccccccccccccCchh
Confidence 999999999999999999999999999999999999999999999999999999999999999952 122
Q ss_pred chhhcCCCcEEEccCCCCCcHHHHHHHHHHHHHHHHHhHcCCCCCCCCCCccc
Q psy6348 225 TFELIKHPKVIVTPHLGASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLN 277 (333)
Q Consensus 225 ~~~L~~~pnvi~TPHi~~~t~ea~~~~~~~~~~~i~~~~~~~~~~~~~~~~vn 277 (333)
.+||+++|||++|||+|++|.+++.++.+.+++|+.++..|+ ...+.||
T Consensus 282 ~~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~n~~~~~~~~----~~~~~~~ 330 (330)
T PRK12480 282 LLELIEHERILVTPHIAFFSDEAVQNLVEGGLNAALSVINTG----TCETRLN 330 (330)
T ss_pred hHHHhcCCCEEECCcccccHHHHHHHHHHHHHHHHHHHHhCC----CCcccCC
Confidence 358999999999999999999999999999999999987777 5666665
No 17
>PRK08605 D-lactate dehydrogenase; Validated
Probab=100.00 E-value=1.2e-61 Score=467.82 Aligned_cols=271 Identities=28% Similarity=0.414 Sum_probs=245.8
Q ss_pred CceEEEEeCCCCCCHHHhcccC---cceEEEcccCcCccChhhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCcc
Q psy6348 1 KYDGLVVRSDTKVTAEVLQASN---LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQG 77 (333)
Q Consensus 1 ~~daliv~s~~~v~~~~l~~~~---Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~ 77 (333)
++|++++++.+++++++|+++| ||+|+++|+|+||||+++|+++||.|+|+|++|+.+||||++++||+++|+++.+
T Consensus 45 ~~~~~~~~~~~~~~~~~l~~~~~~~lk~I~~~~~G~d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~l~~~R~~~~~ 124 (332)
T PRK08605 45 GFDGLSLSQQIPLSEAIYKLLNELGIKQIAQRSAGFDTYDLELATKYNLIISNVPSYSPESIAEFTVTQAINLVRHFNQI 124 (332)
T ss_pred CCCEEEEecCCCCCHHHHHhhhhcCceEEEEcccccchhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHhcChHHH
Confidence 5799999998999999999988 8999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhcCccccc-CCCccccCCCEEEEEecChHHHHHHHHH-hhCCCEEEEEcCCCCHHHHHhcCcccc-ChhhhccCCC
Q psy6348 78 CQSLKEGKWDRK-LYTGTELYGKTLAVLGLGRIGREVALRM-QAFGMKVIGFDPMVSVEDAAKLNIASL-GLEDIWPLAD 154 (333)
Q Consensus 78 ~~~~~~g~w~~~-~~~g~~l~gktvGIIGlG~IG~~vA~~l-~~~G~~V~~~d~~~~~~~a~~~gv~~~-~l~ell~~aD 154 (333)
++.+++|.|... ...|++|.|+||||||+|+||+.+|++| ++|||+|++||++..... ..++... ++++++++||
T Consensus 125 ~~~~~~~~~~~~~~~~~~~l~g~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~--~~~~~~~~~l~ell~~aD 202 (332)
T PRK08605 125 QTKVREHDFRWEPPILSRSIKDLKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKA--ATYVDYKDTIEEAVEGAD 202 (332)
T ss_pred HHHHHhCCcccccccccceeCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHhH--HhhccccCCHHHHHHhCC
Confidence 999999987532 2457899999999999999999999999 789999999999764332 2234444 8999999999
Q ss_pred EEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCC---C--------c
Q psy6348 155 YITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPK---S--------E 223 (333)
Q Consensus 155 vV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~---~--------~ 223 (333)
+|++|+|+++.|+++++++.++.||+|++|||++||.++|+++|.++|++|+|+||+||||++||+. + +
T Consensus 203 vIvl~lP~t~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~~~~~~~~~~ 282 (332)
T PRK08605 203 IVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLIKGAALDTYEFERPLFPSDQRGQTINDP 282 (332)
T ss_pred EEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEEEEecccCCCCccccccccccccch
Confidence 9999999999999999999999999999999999999999999999999999999999999999842 1 1
Q ss_pred cchhhcCCCcEEEccCCCCCcHHHHHHHHHHHHHHHHHhHcCCCCCCCCCCccc
Q psy6348 224 QTFELIKHPKVIVTPHLGASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLN 277 (333)
Q Consensus 224 ~~~~L~~~pnvi~TPHi~~~t~ea~~~~~~~~~~~i~~~~~~~~~~~~~~~~vn 277 (333)
...+|+.+|||++|||+|++|.|++.++...+++|+.+|.+|+ +..+.||
T Consensus 283 ~~~~L~~~~nvilTPHia~~t~e~~~~~~~~~~~n~~~~~~g~----~~~~~~~ 332 (332)
T PRK08605 283 LLESLINREDVILTPHIAFYTDAAVKNLIVDALDATLEVLQTG----TTRLRVN 332 (332)
T ss_pred hhHHHhcCCCEEECCcccccHHHHHHHHHHHHHHHHHHHHcCC----CCCCCcC
Confidence 1126999999999999999999999999999999999988887 6777776
No 18
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=100.00 E-value=7.3e-59 Score=452.96 Aligned_cols=239 Identities=31% Similarity=0.476 Sum_probs=219.7
Q ss_pred CceEEEEeCCCCCCHHHhcccC-cceEEEcccCcCccChhhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccch
Q psy6348 1 KYDGLVVRSDTKVTAEVLQASN-LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQ 79 (333)
Q Consensus 1 ~~daliv~s~~~v~~~~l~~~~-Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~ 79 (333)
++|++++|+.|++++++++ ++ ||+|+++++|+||||+++++++||.|+|+||+|+.+||||++++||+++|+
T Consensus 37 daD~liv~s~t~v~~~ll~-~~~Lk~I~~~~~G~D~iD~~~~~~~gI~v~napg~na~aVAE~~~~~lL~l~r~------ 109 (378)
T PRK15438 37 DADALMVRSVTKVNESLLA-GKPIKFVGTATAGTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSSLLMLAER------ 109 (378)
T ss_pred CCcEEEEcCCCCCCHHHhc-CCCCeEEEECcccccccCHHHHHHCCCEEEECCCcCchHHHHHHHHHHHHHhcc------
Confidence 6899999999999999997 46 999999999999999999999999999999999999999999999999996
Q ss_pred hhhcCcccccCCCccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEe
Q psy6348 80 SLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVH 159 (333)
Q Consensus 80 ~~~~g~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~ 159 (333)
.|.+|.||||||||+|+||+.+|++|++|||+|++|||..... .....+.++++++++||+|++|
T Consensus 110 ------------~g~~L~gktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~~---~~~~~~~~L~ell~~sDiI~lh 174 (378)
T PRK15438 110 ------------DGFSLHDRTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRADR---GDEGDFRSLDELVQEADILTFH 174 (378)
T ss_pred ------------CCCCcCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCccccc---ccccccCCHHHHHhhCCEEEEe
Confidence 1458999999999999999999999999999999999854321 1123456899999999999999
Q ss_pred cCCchh----hHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCccchhhcCCCcEE
Q psy6348 160 TPLIPQ----TKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVI 235 (333)
Q Consensus 160 ~P~t~~----t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~L~~~pnvi 235 (333)
+|+|++ |++|++++.|+.||+|++|||+|||++||++||+++|++|++.||+||||++||+.+ ++|+..++ +
T Consensus 175 ~PLt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~g~~~ga~LDV~e~EP~~~---~~Ll~~~~-i 250 (378)
T PRK15438 175 TPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGAVVDNTALLTCLNEGQKLSVVLDVWEGEPELN---VELLKKVD-I 250 (378)
T ss_pred CCCCCCcccccccccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHHHhCCCcEEEEecCCCCCCCc---hhhhhcCC-E
Confidence 999996 999999999999999999999999999999999999999999999999999999654 47877665 9
Q ss_pred EccCCCCCcHHHHHHHHHHHHHHHHHhHcC
Q psy6348 236 VTPHLGASTKEAQIRVAVEIAEQFIALANT 265 (333)
Q Consensus 236 ~TPHi~~~t~ea~~~~~~~~~~~i~~~~~~ 265 (333)
+|||+||+|.|++.++..++++|+.++.+.
T Consensus 251 ~TPHiAg~s~e~~~~~~~~~~~~l~~~~~~ 280 (378)
T PRK15438 251 GTPHIAGYTLEGKARGTTQVFEAYSKFIGH 280 (378)
T ss_pred ECCccCcCcHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999998854
No 19
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=100.00 E-value=3.8e-59 Score=446.56 Aligned_cols=264 Identities=25% Similarity=0.326 Sum_probs=231.7
Q ss_pred CceEEEEeCCCCCCHHHhcccC-cceEEEcccCcCccChhh-----HhhCCcEEEECCC-CCchHHHHHHHHHHHHHhcC
Q psy6348 1 KYDGLVVRSDTKVTAEVLQASN-LQVVGRAGTGVDNIDLTA-----ATRKGVLVLNAPG-GNFISACELTCSLISALSRN 73 (333)
Q Consensus 1 ~~daliv~s~~~v~~~~l~~~~-Lk~I~~~g~G~d~iD~~a-----a~~~gI~V~n~p~-~n~~avAE~~l~l~l~~~R~ 73 (333)
++|+++++.. +.++++. + ||+|++.|+|+|++|.+. +..+||.|+|+++ +++.+||||++++||+++|+
T Consensus 38 ~a~~~~~~~~---~~~~l~~-~~Lk~I~~~~aG~d~i~~~~~~~~~~~~~~i~v~~~~~~~~~~~vAE~~l~~~L~~~r~ 113 (312)
T PRK15469 38 PADYALVWHP---PVEMLAG-RDLKAVFALGAGVDSILSKLQAHPEMLDPSVPLFRLEDTGMGEQMQEYAVSQVLHWFRR 113 (312)
T ss_pred cCeEEEEeCC---ChHHhcc-CCceEEEEcccccchhhhhhccccccCCCCceEEEecCCcccHHHHHHHHHHHHHHHcC
Confidence 4788888653 4677864 6 999999999999998322 3458999999974 68999999999999999999
Q ss_pred CCccchhhhcCcccccCCCccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHH-HHhcCccccChhhhccC
Q psy6348 74 VPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVED-AAKLNIASLGLEDIWPL 152 (333)
Q Consensus 74 i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~-a~~~gv~~~~l~ell~~ 152 (333)
++++.+.+++|.|.+ ..+.++.|||+||||+|.||+.+|++|++|||+|++||++..... .... ....++++++++
T Consensus 114 ~~~~~~~~~~~~w~~--~~~~~l~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~~~~-~~~~~l~e~l~~ 190 (312)
T PRK15469 114 FDDYQALQNSSHWQP--LPEYHREDFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQSF-AGREELSAFLSQ 190 (312)
T ss_pred hHHHHHHHHhCCcCC--CCCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCceee-cccccHHHHHhc
Confidence 999999999999975 245789999999999999999999999999999999998653211 1111 123489999999
Q ss_pred CCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCccchhhcCCC
Q psy6348 153 ADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHP 232 (333)
Q Consensus 153 aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~L~~~p 232 (333)
||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||+++|++||++|+++||+||||++||++.+ +|||++|
T Consensus 191 aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~gaalDVf~~EPl~~~--~pl~~~~ 268 (312)
T PRK15469 191 TRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFSREPLPPE--SPLWQHP 268 (312)
T ss_pred CCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcCCeeeEEecCCCCCCCCCC--ChhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999997643 7999999
Q ss_pred cEEEccCCCCCcHHHHHHHHHHHHHHHHHhHcCCCCCCCCCCccccc
Q psy6348 233 KVIVTPHLGASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNAP 279 (333)
Q Consensus 233 nvi~TPHi~~~t~ea~~~~~~~~~~~i~~~~~~~~~~~~~~~~vn~~ 279 (333)
||++|||+|++|.++ ++...+++|+.+|..|+ ++.|.||+.
T Consensus 269 nvi~TPHiag~t~~~--~~~~~~~~n~~~~~~g~----~~~~~V~~~ 309 (312)
T PRK15469 269 RVAITPHVAAVTRPA--EAVEYISRTIAQLEKGE----RVCGQVDRA 309 (312)
T ss_pred CeEECCcCCCCcCHH--HHHHHHHHHHHHHHcCC----CCcccCCcc
Confidence 999999999999885 57889999999999998 789999854
No 20
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=100.00 E-value=2.7e-58 Score=449.99 Aligned_cols=241 Identities=29% Similarity=0.434 Sum_probs=222.4
Q ss_pred CceEEEEeCCCCCCHHHhcccCcceEEEcccCcCccChhhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccchh
Q psy6348 1 KYDGLVVRSDTKVTAEVLQASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQS 80 (333)
Q Consensus 1 ~~daliv~s~~~v~~~~l~~~~Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~~ 80 (333)
++|++|+++.+++++++++..+||+|+++++|+||||++++.++||.|+|+||+|+.+||||++++||+++|+
T Consensus 37 daD~liv~~~t~v~~~ll~~~~Lk~I~~~~~G~D~iD~~~~~~~gI~v~napg~na~aVAE~v~~~lL~l~r~------- 109 (381)
T PRK00257 37 DADVLLVRSVTRVDRALLEGSRVRFVGTCTIGTDHLDLDYFAEAGITWSSAPGCNARGVVDYVLGSLLTLAER------- 109 (381)
T ss_pred CceEEEEeCCCCCCHHHhcCCCCeEEEECCccccccCHHHHHHCCCEEEECCCcChHHHHHHHHHHHHHHhcc-------
Confidence 6899999999999999998533999999999999999999999999999999999999999999999999885
Q ss_pred hhcCcccccCCCccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEec
Q psy6348 81 LKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHT 160 (333)
Q Consensus 81 ~~~g~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~ 160 (333)
.|.++.||||||||+|+||+.+|+++++|||+|++|||..... ..+..+.++++++++||+|++|+
T Consensus 110 -----------~g~~l~gktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~---~~~~~~~~l~ell~~aDiV~lh~ 175 (381)
T PRK00257 110 -----------EGVDLAERTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEA---EGDGDFVSLERILEECDVISLHT 175 (381)
T ss_pred -----------cCCCcCcCEEEEECCCHHHHHHHHHHHHCCCEEEEECCccccc---ccCccccCHHHHHhhCCEEEEeC
Confidence 2468999999999999999999999999999999999854321 12345568999999999999999
Q ss_pred CCch----hhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCccchhhcCCCcEEE
Q psy6348 161 PLIP----QTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIV 236 (333)
Q Consensus 161 P~t~----~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~L~~~pnvi~ 236 (333)
|+|+ .|+++|+++.|+.||+|++|||+|||++||++||+++|++|++.||+||||++||+.+ +||+.. |+++
T Consensus 176 Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL~~g~i~~a~LDV~e~EP~~~---~~L~~~-nvi~ 251 (381)
T PRK00257 176 PLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAVVDNQALREALLSGEDLDAVLDVWEGEPQID---LELADL-CTIA 251 (381)
T ss_pred cCCCCccccccccCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCCCCCCCCC---hhhhhC-CEEE
Confidence 9999 5999999999999999999999999999999999999999999999999999999654 578875 9999
Q ss_pred ccCCCCCcHHHHHHHHHHHHHHHHHhHcCC
Q psy6348 237 TPHLGASTKEAQIRVAVEIAEQFIALANTN 266 (333)
Q Consensus 237 TPHi~~~t~ea~~~~~~~~~~~i~~~~~~~ 266 (333)
|||+||+|.|+..++..++++|+.+|.++.
T Consensus 252 TPHiAg~s~e~~~r~~~~~~~nl~~~~~~~ 281 (381)
T PRK00257 252 TPHIAGYSLDGKARGTAQIYQALCRFFGIP 281 (381)
T ss_pred cCccccCCHHHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999998886
No 21
>PRK06436 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=2.9e-58 Score=438.50 Aligned_cols=244 Identities=27% Similarity=0.447 Sum_probs=221.4
Q ss_pred ccC-cceEEEcccCcCccChhhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCC
Q psy6348 20 ASN-LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYG 98 (333)
Q Consensus 20 ~~~-Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~g 98 (333)
.++ ||+|++.|+|+||||+++|.++||.+.| +|+|+.+||||++++||+++|+++++++.+++|.|.+. .+.+|+|
T Consensus 46 ~~~~Lk~I~~~~aG~D~id~~~~~~~~i~~~~-~g~~~~~VAE~~l~l~L~l~R~i~~~~~~~~~g~w~~~--~~~~L~g 122 (303)
T PRK06436 46 PGKKTKMIQSLSAGVDHIDVSGIPENVVLCSN-AGAYSISVAEHAFALLLAWAKNICENNYNMKNGNFKQS--PTKLLYN 122 (303)
T ss_pred CCCCeEEEEECCcccCcccHHHHHhCCeEEEc-CCCCcHHHHHHHHHHHHHHHcChHHHHHHHHcCCCCCC--CCCCCCC
Confidence 346 9999999999999999999998887777 58899999999999999999999999999999999863 4689999
Q ss_pred CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCcc--ccChhhhccCCCEEEEecCCchhhHhhccHHHHh
Q psy6348 99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIA--SLGLEDIWPLADYITVHTPLIPQTKNLINAEVLK 176 (333)
Q Consensus 99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~--~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~ 176 (333)
||+||||+|+||+++|+++++|||+|++|||+.... ++. ..++++++++||+|++|+|+|++|+++|+++.|+
T Consensus 123 ktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~~-----~~~~~~~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l~ 197 (303)
T PRK06436 123 KSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVND-----GISSIYMEPEDIMKKSDFVLISLPLTDETRGMINSKMLS 197 (303)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCccc-----CcccccCCHHHHHhhCCEEEECCCCCchhhcCcCHHHHh
Confidence 999999999999999999999999999999975321 221 4589999999999999999999999999999999
Q ss_pred ccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCccchhhcCCCcEEEccCCC-CCcHHHHHHHHHHH
Q psy6348 177 KCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLG-ASTKEAQIRVAVEI 255 (333)
Q Consensus 177 ~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~L~~~pnvi~TPHi~-~~t~ea~~~~~~~~ 255 (333)
.||+|++|||+|||+++|+++|+++|++|++.||+||||++||++.+ + .+|||++|||++ ++|.|++.++...+
T Consensus 198 ~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i~~a~lDV~~~EP~~~~--~---~~~nviiTPHi~g~~t~e~~~~~~~~~ 272 (303)
T PRK06436 198 LFRKGLAIINVARADVVDKNDMLNFLRNHNDKYYLSDVWWNEPIITE--T---NPDNVILSPHVAGGMSGEIMQPAVALA 272 (303)
T ss_pred cCCCCeEEEECCCccccCHHHHHHHHHcCCceEEEEccCCCCCCCcc--C---CCCCEEECCccccccCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999997543 2 689999999986 58999999999999
Q ss_pred HHHHHHhHcCCCCCCCCCCccccccc
Q psy6348 256 AEQFIALANTNPQYTSIQGVLNAPAL 281 (333)
Q Consensus 256 ~~~i~~~~~~~~~~~~~~~~vn~~~~ 281 (333)
++|+.+|..|+ +.|.||...+
T Consensus 273 ~~ni~~~~~g~-----~~~~V~~~~y 293 (303)
T PRK06436 273 FENIKNFFEGK-----PKNIVRKEEY 293 (303)
T ss_pred HHHHHHHHcCC-----CCceEchHHh
Confidence 99999998886 4688887643
No 22
>KOG0069|consensus
Probab=100.00 E-value=3.9e-58 Score=437.53 Aligned_cols=254 Identities=34% Similarity=0.572 Sum_probs=235.9
Q ss_pred CCCCHHHhccc-C-cceEEEcccCcCccChhhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccchhhhcCcccc
Q psy6348 11 TKVTAEVLQAS-N-LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDR 88 (333)
Q Consensus 11 ~~v~~~~l~~~-~-Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~ 88 (333)
...+.+++.+. | ||+|..+|+|+||||+++|++|||.|+|+|+.++.+|||++++++|.+.|++..+++.+++|+|..
T Consensus 71 ~~~~~~~~~a~~p~lK~i~t~~vG~D~vDl~a~~krgI~V~nvp~~~~~~vAd~~~~lil~~~R~~~~g~~~~~~g~w~~ 150 (336)
T KOG0069|consen 71 GAFTKELISALSPNLKLIVTMSVGYDHVDLEAARKRGIRVANVPDVLTDDVADLAVSLLLALLRRFSEGNEMVRNGGWGW 150 (336)
T ss_pred hHHhHhhhhhcCCCeeEEEEeecccchhhHHHHHhcCceEeccCCcchHHHHHHHHHHHHHHHhhhhhhhhhhhcCCccc
Confidence 34667777775 6 999999999999999999999999999999999999999999999999999999999999999932
Q ss_pred --cCCCccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHhcCccccChhhhccCCCEEEEecCCchh
Q psy6348 89 --KLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV-SVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQ 165 (333)
Q Consensus 89 --~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~ 165 (333)
....|..+.||||||+|+|+||+.+|+||++||+.+.+++++. ..+.+.+.+.+..++++++++||+|++|||+|++
T Consensus 151 ~~~~~~g~~~~gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~~~~d~~~~~~~sD~ivv~~pLt~~ 230 (336)
T KOG0069|consen 151 AGGWPLGYDLEGKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYAEFVDIEELLANSDVIVVNCPLTKE 230 (336)
T ss_pred cCCccccccccCCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHHhcccccCHHHHHhhCCEEEEecCCCHH
Confidence 2345788999999999999999999999999998888888876 4667777777788999999999999999999999
Q ss_pred hHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCccchhhcCCCcEEEccCCCCCcH
Q psy6348 166 TKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTK 245 (333)
Q Consensus 166 t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~L~~~pnvi~TPHi~~~t~ 245 (333)
|+++|+++.|+.||+|++|||++||+++|++++++||++|++.||+||||++||+.+ +||+.++||++|||+|++|.
T Consensus 231 T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~sG~i~~aGlDVf~~EP~~~---~~l~~~dnvv~~PHigs~t~ 307 (336)
T KOG0069|consen 231 TRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALKSGKIAGAGLDVFEPEPPVD---HPLLTLDNVVILPHIGSATL 307 (336)
T ss_pred HHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHHhcCCcccccccccCCCCCCC---cchhcccceeEecccccCcH
Confidence 999999999999999999999999999999999999999999999999999999554 68999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHcCCC
Q psy6348 246 EAQIRVAVEIAEQFIALANTNP 267 (333)
Q Consensus 246 ea~~~~~~~~~~~i~~~~~~~~ 267 (333)
+++.+|+..++.|+.++..|++
T Consensus 308 ~t~~~m~~~v~~n~~~~~~g~~ 329 (336)
T KOG0069|consen 308 ETREKMAEIVLNNLLAFFSGKP 329 (336)
T ss_pred HHHHHHHHHHHHHHHHHHccCC
Confidence 9999999999999999887773
No 23
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=100.00 E-value=2.2e-49 Score=350.68 Aligned_cols=176 Identities=46% Similarity=0.793 Sum_probs=158.3
Q ss_pred HHHHHHHhcCCCccchhhhcCcc-cccCCCccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHH-HHhcCc
Q psy6348 64 CSLISALSRNVPQGCQSLKEGKW-DRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVED-AAKLNI 141 (333)
Q Consensus 64 l~l~l~~~R~i~~~~~~~~~g~w-~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~-a~~~gv 141 (333)
+++||++.|+++.+++.+++|.| .+....+.+++|+||||||+|+||+.+|+++++|||+|++|||+..... ....++
T Consensus 1 i~l~L~~~R~~~~~~~~~~~~~W~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~ 80 (178)
T PF02826_consen 1 IALMLALLRRLPEYHEAQRNGEWASRERFPGRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGV 80 (178)
T ss_dssp HHHHHHHHTTHHHHHHHHHTTBHHHHTTTTBS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTE
T ss_pred ChHHHHHHhCHHHHHHHHHcCCCCCCcCCCccccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcccccc
Confidence 68999999999999999999999 4445678999999999999999999999999999999999999986554 567788
Q ss_pred cccChhhhccCCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCC
Q psy6348 142 ASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPK 221 (333)
Q Consensus 142 ~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~ 221 (333)
...+++|++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||+++|++|+++||+||||++||++
T Consensus 81 ~~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~ 160 (178)
T PF02826_consen 81 EYVSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALESGKIAGAALDVFEPEPLP 160 (178)
T ss_dssp EESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTTSEEEEEESS-SSSSSS
T ss_pred eeeehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhhccCceEEEECCCCCCCC
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred CccchhhcCCCcEEEccCCC
Q psy6348 222 SEQTFELIKHPKVIVTPHLG 241 (333)
Q Consensus 222 ~~~~~~L~~~pnvi~TPHi~ 241 (333)
.. +||+++|||++|||+|
T Consensus 161 ~~--~~l~~~~nvi~TPH~a 178 (178)
T PF02826_consen 161 AD--SPLWDLPNVILTPHIA 178 (178)
T ss_dssp TT--HHHHTSTTEEEESS-T
T ss_pred CC--ChHHcCCCEEEeCccC
Confidence 43 7999999999999986
No 24
>KOG0067|consensus
Probab=100.00 E-value=2.6e-35 Score=279.22 Aligned_cols=262 Identities=32% Similarity=0.477 Sum_probs=236.6
Q ss_pred CCCCHHHhcccC-cceEEEcccCcCccChhhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccchhhhcCccccc
Q psy6348 11 TKVTAEVLQASN-LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRK 89 (333)
Q Consensus 11 ~~v~~~~l~~~~-Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~ 89 (333)
..++++-+++.+ ||+|.+.|.|+||+|+.+|.+.||.|||.|+...+.+|.-++.++|.++|+.....+.+++|.|...
T Consensus 83 i~l~reDlEkfkalRv~~rig~g~dn~dikaAseL~iavC~ip~~~Ve~~a~stl~hIl~l~rrntw~cq~l~eg~~~q~ 162 (435)
T KOG0067|consen 83 ITLPREDLEKFKALRVIVRIGSGYDNIDIKAASELGIAVCNIPSDAVEETADSTLCHILNLYRRNTWLCQALREGTCTQG 162 (435)
T ss_pred cccchhhHHHhhhhceeeeeccccchhhhhhhhhheeeeecccchhHHHHHHHHHHHHHhhhcccchhhhhhcccceeec
Confidence 568899999999 9999999999999999999999999999999999999999999999999999999999999998643
Q ss_pred C-------CCccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCcccc-ChhhhccCCCEEEEecC
Q psy6348 90 L-------YTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASL-GLEDIWPLADYITVHTP 161 (333)
Q Consensus 90 ~-------~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~-~l~ell~~aDvV~l~~P 161 (333)
. .....+.|.++|++|+|++|+.++.++++||..|+.|||+.....-+.+|.+.+ ++++++.++|.+++|+.
T Consensus 163 ~~q~~e~a~g~~~~~G~~~g~~g~gr~g~av~~~A~afg~~~ifydp~~~~g~~~~lg~~rVytlqd~~~~sd~~S~hc~ 242 (435)
T KOG0067|consen 163 LEQVREAACGLARIRGPTLGLIGFGRTGQAVALRAKAFGFVVIFYDPYLIDGIDKSLGLQRVYTLQDLLYQSDCVSLHCN 242 (435)
T ss_pred hhhhhhhhhccccccccceeeeccccccceehhhhhcccceeeeecchhhhhhhhhcccceecccchhhhhccceeeecc
Confidence 2 123467899999999999999999999999999999999987666677888765 89999999999999999
Q ss_pred CchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCccchhhcCCCcEEEccCCC
Q psy6348 162 LIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLG 241 (333)
Q Consensus 162 ~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~L~~~pnvi~TPHi~ 241 (333)
+++++.++|+.-..++|++|++++|++||+++|+++|.++|+.|++.+++ |-.. ...||.+.||.++|||.+
T Consensus 243 ~~~~~h~lin~~tikqm~qGaflvnta~gglvdekaLaqaLk~G~i~~aa-------~~~~-~~~~l~d~pn~ic~~~ta 314 (435)
T KOG0067|consen 243 LNEHNHELINDFTIKQMRQGAFLVNTARGGLVDEKALAQALKSGRIRGAA-------PRSF-KQGPLKDAPNLICTPHTA 314 (435)
T ss_pred cCcccccccccccceeecccceEeeecccccCChHHHHhhhccCceeccc-------Cccc-ccccccCCCCCCCCcccc
Confidence 99999999999999999999999999999999999999999999999988 2221 124788999999999999
Q ss_pred CCcHHHHHHHHHHHHHHHHH-hHcCCCCCCCCCCcccccccC
Q psy6348 242 ASTKEAQIRVAVEIAEQFIA-LANTNPQYTSIQGVLNAPALA 282 (333)
Q Consensus 242 ~~t~ea~~~~~~~~~~~i~~-~~~~~~~~~~~~~~vn~~~~~ 282 (333)
++++.+..++-+.++..+++ +.+.-|+ .++++||++.+.
T Consensus 315 ~~~e~~~~e~re~aa~eiR~ai~g~ip~--~l~~cvnkE~~~ 354 (435)
T KOG0067|consen 315 WYSEAASVELREVAALEIRRAITGRIPD--SLRNCVNKEFSP 354 (435)
T ss_pred hhhHHHHHHHHHHHhhhhhhccCCCCch--hHHHHHhhhhcc
Confidence 99999999999999999998 5555544 589999998654
No 25
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=99.89 E-value=2.6e-22 Score=199.99 Aligned_cols=169 Identities=20% Similarity=0.235 Sum_probs=141.6
Q ss_pred cccCcCccC-hhhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCCCEEEEEecC
Q psy6348 29 AGTGVDNID-LTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLG 107 (333)
Q Consensus 29 ~g~G~d~iD-~~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIGlG 107 (333)
+++|+...- ++...+.||+|+|+|++++.+++|+++++++++. +..+|.+ +.++.||+++|||+|
T Consensus 198 TttGv~rl~~m~~~g~L~iPV~nv~d~~tk~~aD~~~G~~~s~~------d~~~R~~--------~~~LaGKtVgVIG~G 263 (476)
T PTZ00075 198 TTTGVHRLYKMLKKGELLFPAINVNDSVTKSKFDNIYGCRHSLI------DGIFRAT--------DVMIAGKTVVVCGYG 263 (476)
T ss_pred chHHHHHHHHHHHCCCCCceEEEeCCcchHHHHHHHHHHHHHHH------HHHHHhc--------CCCcCCCEEEEECCC
Confidence 578887652 2333457899999999999999999999999988 3334433 468999999999999
Q ss_pred hHHHHHHHHHhhCCCEEEEEcCCCCHH-HHHhcCccccChhhhccCCCEEEEecCCchhhHhhccHHHHhccCCCcEEEE
Q psy6348 108 RIGREVALRMQAFGMKVIGFDPMVSVE-DAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVN 186 (333)
Q Consensus 108 ~IG~~vA~~l~~~G~~V~~~d~~~~~~-~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN 186 (333)
.||+.+|+++++||++|++|++.+... .+...|++..++++++++||+|++|+ .++++|+++.|+.||+|++|||
T Consensus 264 ~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~~~leell~~ADIVI~at----Gt~~iI~~e~~~~MKpGAiLIN 339 (476)
T PTZ00075 264 DVGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQVVTLEDVVETADIFVTAT----GNKDIITLEHMRRMKNNAIVGN 339 (476)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCceeccHHHHHhcCCEEEECC----CcccccCHHHHhccCCCcEEEE
Confidence 999999999999999999997765332 34556887789999999999999985 4789999999999999999999
Q ss_pred ccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCC
Q psy6348 187 VARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKS 222 (333)
Q Consensus 187 ~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~ 222 (333)
++|+ |++.+.++|+++. ++|+++.||...
T Consensus 340 vGr~---d~Ei~i~aL~~~~----~vdv~evep~v~ 368 (476)
T PTZ00075 340 IGHF---DNEIQVAELEAYP----GIEIVEIKPQVD 368 (476)
T ss_pred cCCC---chHHhHHHHHhcC----CceeecccCCCC
Confidence 9999 6888888888754 789999999653
No 26
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=99.85 E-value=4.7e-21 Score=181.78 Aligned_cols=158 Identities=22% Similarity=0.272 Sum_probs=130.4
Q ss_pred EEEeCCCCCCHHHhcccCcceEEEcccCcCccChh-hHhhCCcEEE------ECCCCCchHHHHHHHHHHHHHhcCCCcc
Q psy6348 5 LVVRSDTKVTAEVLQASNLQVVGRAGTGVDNIDLT-AATRKGVLVL------NAPGGNFISACELTCSLISALSRNVPQG 77 (333)
Q Consensus 5 liv~s~~~v~~~~l~~~~Lk~I~~~g~G~d~iD~~-aa~~~gI~V~------n~p~~n~~avAE~~l~l~l~~~R~i~~~ 77 (333)
++......+++++|+..|. ++...+|+++.|++ +|+++||.|+ |.+.+|+.++||+++++++..
T Consensus 74 ~~~~~~~~l~~~~l~~~~~--~~~~~~G~~~~~l~~~a~~~gi~v~~~~~~~~va~~n~~~~Ae~ai~~al~~------- 144 (287)
T TIGR02853 74 VFSNEKVVLTPELLESTKG--HCTIYVGISNPYLEQLAADAGVKLIELFERDDVAIYNSIPTAEGAIMMAIEH------- 144 (287)
T ss_pred ccccCCccccHHHHHhcCC--CCEEEEecCCHHHHHHHHHCCCeEEEEEeccceEEEccHhHHHHHHHHHHHh-------
Confidence 3344455678999988774 55677888888887 9999999999 888899999999999988842
Q ss_pred chhhhcCcccccCCCccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCC-HHHHHhcCcccc---ChhhhccCC
Q psy6348 78 CQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVS-VEDAAKLNIASL---GLEDIWPLA 153 (333)
Q Consensus 78 ~~~~~~g~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~gv~~~---~l~ell~~a 153 (333)
.+.+++|++++|+|+|+||+.+|++|+++|++|++++++.. .+.+.+.|.... +++++++++
T Consensus 145 --------------~~~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~a 210 (287)
T TIGR02853 145 --------------TDFTIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKVAEI 210 (287)
T ss_pred --------------cCCCCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhccC
Confidence 23478999999999999999999999999999999999763 233444565433 577889999
Q ss_pred CEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCC
Q psy6348 154 DYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARG 190 (333)
Q Consensus 154 DvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg 190 (333)
|+|++|+|. .+++++.++.||+++++||++..
T Consensus 211 DiVint~P~-----~ii~~~~l~~~k~~aliIDlas~ 242 (287)
T TIGR02853 211 DIVINTIPA-----LVLTADVLSKLPKHAVIIDLASK 242 (287)
T ss_pred CEEEECCCh-----HHhCHHHHhcCCCCeEEEEeCcC
Confidence 999999995 36788899999999999999874
No 27
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=99.76 E-value=2.6e-18 Score=144.70 Aligned_cols=63 Identities=46% Similarity=0.655 Sum_probs=58.3
Q ss_pred CceEEEEeCCCCCCHHHhcccC-cceEEEcccCcCccChhhHhhCCcEEEECCCCCchHHHHHH
Q psy6348 1 KYDGLVVRSDTKVTAEVLQASN-LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELT 63 (333)
Q Consensus 1 ~~daliv~s~~~v~~~~l~~~~-Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~n~~avAE~~ 63 (333)
++|++++++.+++++++|+.+| ||+|++.|+|+||||+++|+++||.|+|+||+++.+||||+
T Consensus 38 ~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~a~~~gI~V~n~~g~~~~aVAE~a 101 (133)
T PF00389_consen 38 DADAIIVGSGTPLTAEVLEAAPNLKLISTAGAGVDNIDLEAAKERGIPVTNVPGYNAEAVAEHA 101 (133)
T ss_dssp TESEEEESTTSTBSHHHHHHHTT-SEEEESSSSCTTB-HHHHHHTTSEEEE-TTTTHHHHHHHH
T ss_pred CCeEEEEcCCCCcCHHHHhccceeEEEEEcccccCcccHHHHhhCeEEEEEeCCcCCcchhccc
Confidence 5899999998889999999999 99999999999999999999999999999999999999999
No 28
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=99.68 E-value=4.7e-16 Score=148.24 Aligned_cols=151 Identities=19% Similarity=0.218 Sum_probs=124.5
Q ss_pred CCCHHHhcccC-cceEEEcccCcCccChhhHhhCCcEEEECCCC------CchHHHHHHHHHHHHHhcCCCccchhhhcC
Q psy6348 12 KVTAEVLQASN-LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGG------NFISACELTCSLISALSRNVPQGCQSLKEG 84 (333)
Q Consensus 12 ~v~~~~l~~~~-Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~------n~~avAE~~l~l~l~~~R~i~~~~~~~~~g 84 (333)
.++++.++..| +..+. .|.+.+++| +.|.++||.+++.+.. |+.++||.++.+.+.
T Consensus 82 ~~~~~~l~~l~~~~~v~-~G~~~~~~~-~~~~~~gi~~~~~~~~~~~~~~ns~~~aegav~~a~~--------------- 144 (296)
T PRK08306 82 VLTEELLELTPEHCTIF-SGIANPYLK-ELAKETNRKLVELFERDDVAILNSIPTAEGAIMMAIE--------------- 144 (296)
T ss_pred cchHHHHHhcCCCCEEE-EecCCHHHH-HHHHHCCCeEEEEeccchhhhhccHhHHHHHHHHHHH---------------
Confidence 34788999998 86444 699999998 8899999999998864 999999998876542
Q ss_pred cccccCCCccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHhcCcccc---ChhhhccCCCEEEEec
Q psy6348 85 KWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV-SVEDAAKLNIASL---GLEDIWPLADYITVHT 160 (333)
Q Consensus 85 ~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~gv~~~---~l~ell~~aDvV~l~~ 160 (333)
..+.+++|++++|+|+|.+|+.+++.|+++|++|+++|++. ..+.+++.|.+.. ++.+.++++|+|+.++
T Consensus 145 ------~~~~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~ 218 (296)
T PRK08306 145 ------HTPITIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITEMGLSPFHLSELAEEVGKIDIIFNTI 218 (296)
T ss_pred ------hCCCCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEEECC
Confidence 11246789999999999999999999999999999999986 3345566776654 5678889999999999
Q ss_pred CCchhhHhhccHHHHhccCCCcEEEEccCC
Q psy6348 161 PLIPQTKNLINAEVLKKCKKGVRVVNVARG 190 (333)
Q Consensus 161 P~t~~t~~li~~~~~~~mk~gailIN~aRg 190 (333)
|. .+++++.++.|++++++||++..
T Consensus 219 p~-----~~i~~~~l~~~~~g~vIIDla~~ 243 (296)
T PRK08306 219 PA-----LVLTKEVLSKMPPEALIIDLASK 243 (296)
T ss_pred Ch-----hhhhHHHHHcCCCCcEEEEEccC
Confidence 83 56788999999999999999753
No 29
>PLN02494 adenosylhomocysteinase
Probab=99.67 E-value=1.6e-16 Score=158.27 Aligned_cols=121 Identities=23% Similarity=0.238 Sum_probs=107.7
Q ss_pred cccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCC-HHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhccH
Q psy6348 94 TELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVS-VEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINA 172 (333)
Q Consensus 94 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~~ 172 (333)
..+.||+++|+|+|.||+.+|+++++||++|+++++.+. ...+...|+...+++++++.+|+|+.+ ..++++++.
T Consensus 250 i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv~leEal~~ADVVI~t----TGt~~vI~~ 325 (477)
T PLN02494 250 VMIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVLTLEDVVSEADIFVTT----TGNKDIIMV 325 (477)
T ss_pred CccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeeccHHHHHhhCCEEEEC----CCCccchHH
Confidence 347899999999999999999999999999999988763 345667788777899999999999974 467899999
Q ss_pred HHHhccCCCcEEEEccC-CcccchHhHHhh--hhcCCceEEEeccCCCCC
Q psy6348 173 EVLKKCKKGVRVVNVAR-GGIVDENALLDS--LKCGHCGGAALDVFCEEP 219 (333)
Q Consensus 173 ~~~~~mk~gailIN~aR-g~~vd~~aL~~a--L~~g~i~gaalDV~~~EP 219 (333)
+.|+.||+|++|+|++| +..||+++|.++ ++.+.++ +.+|+|+.|-
T Consensus 326 e~L~~MK~GAiLiNvGr~~~eID~~aL~~~~~l~~~~i~-~~vd~y~~~d 374 (477)
T PLN02494 326 DHMRKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIK-PQTDRWVFPD 374 (477)
T ss_pred HHHhcCCCCCEEEEcCCCCCccCHHHHhhccccceeccC-CCceEEEcCC
Confidence 99999999999999999 689999999998 9999998 9999999863
No 30
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=99.61 E-value=2e-15 Score=144.06 Aligned_cols=92 Identities=24% Similarity=0.254 Sum_probs=81.8
Q ss_pred cccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhccH
Q psy6348 94 TELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV-SVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINA 172 (333)
Q Consensus 94 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~~ 172 (333)
..|+||||||||+|+||+++|++|+++|++|++|++.. +.+.+...|++..+++|++++||+|++|+|+ ++++++++.
T Consensus 12 ~~LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v~sl~Eaak~ADVV~llLPd-~~t~~V~~~ 90 (335)
T PRK13403 12 ELLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEVMSVSEAVRTAQVVQMLLPD-EQQAHVYKA 90 (335)
T ss_pred hhhCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEECCHHHHHhcCCEEEEeCCC-hHHHHHHHH
Confidence 57999999999999999999999999999999997643 4455666788777999999999999999997 778999999
Q ss_pred HHHhccCCCcEEEE
Q psy6348 173 EVLKKCKKGVRVVN 186 (333)
Q Consensus 173 ~~~~~mk~gailIN 186 (333)
+.++.||+|++|+-
T Consensus 91 eil~~MK~GaiL~f 104 (335)
T PRK13403 91 EVEENLREGQMLLF 104 (335)
T ss_pred HHHhcCCCCCEEEE
Confidence 99999999998863
No 31
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=99.59 E-value=6.1e-15 Score=145.63 Aligned_cols=120 Identities=23% Similarity=0.293 Sum_probs=104.6
Q ss_pred cccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCC-HHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhccH
Q psy6348 94 TELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVS-VEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINA 172 (333)
Q Consensus 94 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~~ 172 (333)
..+.|++++|+|+|.||+.+|++++++|++|+++|+.+. ...+...|+...+++++++++|+|+.++ .+.++++.
T Consensus 191 ~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v~~leeal~~aDVVItaT----G~~~vI~~ 266 (406)
T TIGR00936 191 LLIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRVMTMEEAAKIGDIFITAT----GNKDVIRG 266 (406)
T ss_pred CCCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEeCCHHHHHhcCCEEEECC----CCHHHHHH
Confidence 347899999999999999999999999999999987653 3445566887778899999999998765 46889999
Q ss_pred HHHhccCCCcEEEEccCCcc-cchHhHHhhhhcCCceEEEeccCCC
Q psy6348 173 EVLKKCKKGVRVVNVARGGI-VDENALLDSLKCGHCGGAALDVFCE 217 (333)
Q Consensus 173 ~~~~~mk~gailIN~aRg~~-vd~~aL~~aL~~g~i~gaalDV~~~ 217 (333)
+.|..||+|++++|++|+.+ ||.++|.+++.+....+..+|+|.-
T Consensus 267 ~~~~~mK~GailiN~G~~~~eId~~aL~~~~~~~~~~~~~v~~~~~ 312 (406)
T TIGR00936 267 EHFENMKDGAIVANIGHFDVEIDVKALEELAVEKRNVRPQVDEYIL 312 (406)
T ss_pred HHHhcCCCCcEEEEECCCCceeCHHHHHHHHhhccccccceEEEEe
Confidence 99999999999999999998 9999999998877777789998874
No 32
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=99.50 E-value=5.5e-14 Score=139.65 Aligned_cols=153 Identities=24% Similarity=0.269 Sum_probs=116.8
Q ss_pred cccCcCcc-ChhhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccchhhhcCcccc-cCCCccccCCCEEEEEec
Q psy6348 29 AGTGVDNI-DLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDR-KLYTGTELYGKTLAVLGL 106 (333)
Q Consensus 29 ~g~G~d~i-D~~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~-~~~~g~~l~gktvGIIGl 106 (333)
+++|+... .++...+.+++|+|.+.+++.+..|... .+.++.|+. ....+..+.|++++|+|+
T Consensus 156 TttGv~rl~~~~~~~~l~~Pv~~vn~s~~K~~~dn~~---------------gt~~s~~~ai~rat~~~l~Gk~VlViG~ 220 (425)
T PRK05476 156 TTTGVHRLYAMAKDGALKFPAINVNDSVTKSKFDNRY---------------GTGESLLDGIKRATNVLIAGKVVVVAGY 220 (425)
T ss_pred chHHHHHHHHHHHcCCCCCCEEecCCcccCccccccH---------------HHHhhhHHHHHHhccCCCCCCEEEEECC
Confidence 68888775 3333456789999999988887433222 223344431 012245689999999999
Q ss_pred ChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHHhcCccccChhhhccCCCEEEEecCCchhhHhhccHHHHhccCCCcEEE
Q psy6348 107 GRIGREVALRMQAFGMKVIGFDPMVSV-EDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVV 185 (333)
Q Consensus 107 G~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailI 185 (333)
|.||+.+|++++++|++|+++|+.+.. ..+...|++..+++++++.+|+|+.++ .+.++++.+.++.||+|++++
T Consensus 221 G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~v~~l~eal~~aDVVI~aT----G~~~vI~~~~~~~mK~Gaili 296 (425)
T PRK05476 221 GDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFRVMTMEEAAELGDIFVTAT----GNKDVITAEHMEAMKDGAILA 296 (425)
T ss_pred CHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCEecCHHHHHhCCCEEEECC----CCHHHHHHHHHhcCCCCCEEE
Confidence 999999999999999999999987633 344556777678999999999998875 457789999999999999999
Q ss_pred EccCCcc-cchHhHHh
Q psy6348 186 NVARGGI-VDENALLD 200 (333)
Q Consensus 186 N~aRg~~-vd~~aL~~ 200 (333)
|+++... +|.++|.+
T Consensus 297 NvG~~d~Eid~~~L~~ 312 (425)
T PRK05476 297 NIGHFDNEIDVAALEE 312 (425)
T ss_pred EcCCCCCccChHHHhh
Confidence 9999876 77777654
No 33
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.49 E-value=6.1e-14 Score=122.25 Aligned_cols=114 Identities=16% Similarity=0.224 Sum_probs=91.3
Q ss_pred CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCC-HHHHHhcCcccc-ChhhhccCCCEEEEecCCchhhHhhcc-HHHH
Q psy6348 99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVS-VEDAAKLNIASL-GLEDIWPLADYITVHTPLIPQTKNLIN-AEVL 175 (333)
Q Consensus 99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~gv~~~-~l~ell~~aDvV~l~~P~t~~t~~li~-~~~~ 175 (333)
++|||||+|+||+.+|++|...|++|++||++.. .+...+.|++.+ ++.|++++||+|++++|..++++.++. .+.+
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~i~ 81 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGENIL 81 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTTHG
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhHHh
Confidence 5899999999999999999999999999998763 345556677665 899999999999999998888888763 2277
Q ss_pred hccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEecc
Q psy6348 176 KKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDV 214 (333)
Q Consensus 176 ~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV 214 (333)
+.+++|.++||++...+-....+.+.+++..+ ..+|.
T Consensus 82 ~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~--~~vda 118 (163)
T PF03446_consen 82 AGLRPGKIIIDMSTISPETSRELAERLAAKGV--RYVDA 118 (163)
T ss_dssp GGS-TTEEEEE-SS--HHHHHHHHHHHHHTTE--EEEEE
T ss_pred hccccceEEEecCCcchhhhhhhhhhhhhccc--eeeee
Confidence 88999999999999999999999999987765 46665
No 34
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=99.47 E-value=2.3e-13 Score=128.48 Aligned_cols=113 Identities=19% Similarity=0.189 Sum_probs=101.1
Q ss_pred CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH--HHHHhcCcccc-ChhhhccCCCEEEEecCCchhhHhhcc--HH
Q psy6348 99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV--EDAAKLNIASL-GLEDIWPLADYITVHTPLIPQTKNLIN--AE 173 (333)
Q Consensus 99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~--~~a~~~gv~~~-~l~ell~~aDvV~l~~P~t~~t~~li~--~~ 173 (333)
.+||+||+|.||.+||++|...|++|.+||+.+.. +.+...|.+.. +..|+.+++|+|++|+|..++.+.++. ..
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g 80 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENG 80 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccc
Confidence 48999999999999999999999999999998733 45566688765 778999999999999999999999885 57
Q ss_pred HHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEec
Q psy6348 174 VLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALD 213 (333)
Q Consensus 174 ~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalD 213 (333)
.++.+|+|.++||+++.++.....+.+++++..+. .+|
T Consensus 81 ~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~--~lD 118 (286)
T COG2084 81 LLEGLKPGAIVIDMSTISPETARELAAALAAKGLE--FLD 118 (286)
T ss_pred hhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCc--EEe
Confidence 88999999999999999999999999999998875 556
No 35
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=99.38 E-value=2.1e-12 Score=122.53 Aligned_cols=121 Identities=17% Similarity=0.244 Sum_probs=97.5
Q ss_pred CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCC-HHHHHhcCcccc-ChhhhccCCCEEEEecCCchhhHhhcc--HHH
Q psy6348 99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVS-VEDAAKLNIASL-GLEDIWPLADYITVHTPLIPQTKNLIN--AEV 174 (333)
Q Consensus 99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~gv~~~-~l~ell~~aDvV~l~~P~t~~t~~li~--~~~ 174 (333)
++|||||+|.||+.+|+.+...|++|++||++.. .+...+.|+... ++++++++||+|++|+|.+..++.++. ...
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~ 82 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENGI 82 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcchH
Confidence 5899999999999999999999999999999763 334455666554 788999999999999998888888763 346
Q ss_pred HhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCC
Q psy6348 175 LKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEP 219 (333)
Q Consensus 175 ~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP 219 (333)
++.+++|.++||+++..+...+++.+.+++..+...---|+..+|
T Consensus 83 ~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d~pv~g~~~ 127 (296)
T PRK11559 83 IEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLDAPVSGGEP 127 (296)
T ss_pred hhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEEcCCCCCHH
Confidence 778999999999999999989999999987665433333454433
No 36
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=99.38 E-value=1.7e-12 Score=112.82 Aligned_cols=104 Identities=25% Similarity=0.353 Sum_probs=75.9
Q ss_pred ccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhcc
Q psy6348 93 GTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV-SVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLIN 171 (333)
Q Consensus 93 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~ 171 (333)
...+.||++.|+|||.+|+.+|++|+++|.+|++++..+ ..-.+...|++..+++++++++|+++.++. .+.++.
T Consensus 18 ~~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v~~~~~a~~~adi~vtaTG----~~~vi~ 93 (162)
T PF00670_consen 18 NLMLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDGFEVMTLEEALRDADIFVTATG----NKDVIT 93 (162)
T ss_dssp -S--TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-EEE-HHHHTTT-SEEEE-SS----SSSSB-
T ss_pred ceeeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcEecCHHHHHhhCCEEEECCC----CccccC
Confidence 467899999999999999999999999999999999876 334556679988899999999999998764 467889
Q ss_pred HHHHhccCCCcEEEEccCCcc-cchHhHHh
Q psy6348 172 AEVLKKCKKGVRVVNVARGGI-VDENALLD 200 (333)
Q Consensus 172 ~~~~~~mk~gailIN~aRg~~-vd~~aL~~ 200 (333)
.+.|++||+|+++.|++.-.. +|.+.|.+
T Consensus 94 ~e~~~~mkdgail~n~Gh~d~Eid~~~L~~ 123 (162)
T PF00670_consen 94 GEHFRQMKDGAILANAGHFDVEIDVDALEA 123 (162)
T ss_dssp HHHHHHS-TTEEEEESSSSTTSBTHHHHHT
T ss_pred HHHHHHhcCCeEEeccCcCceeEeeccccc
Confidence 999999999999999976443 44444443
No 37
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=99.38 E-value=2.5e-12 Score=121.87 Aligned_cols=109 Identities=14% Similarity=0.221 Sum_probs=91.6
Q ss_pred EEEEEecChHHHHHHHHHhhCCCEEEEEcCCCC-HHHHHhcCcccc-ChhhhccCCCEEEEecCCchhhHhhc-c-HHHH
Q psy6348 100 TLAVLGLGRIGREVALRMQAFGMKVIGFDPMVS-VEDAAKLNIASL-GLEDIWPLADYITVHTPLIPQTKNLI-N-AEVL 175 (333)
Q Consensus 100 tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~gv~~~-~l~ell~~aDvV~l~~P~t~~t~~li-~-~~~~ 175 (333)
+|||||+|.||+.+|+++...|++|++||++.. .+...+.|.... +.++++++||+|++|+|..+.++.++ . ...+
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~ 80 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGII 80 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchHh
Confidence 589999999999999999999999999999762 334455666443 78899999999999999888887775 3 3467
Q ss_pred hccCCCcEEEEccCCcccchHhHHhhhhcCCce
Q psy6348 176 KKCKKGVRVVNVARGGIVDENALLDSLKCGHCG 208 (333)
Q Consensus 176 ~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~ 208 (333)
+.+++|+++||+++..+.+.+++.+.+++..+.
T Consensus 81 ~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~ 113 (291)
T TIGR01505 81 EGAKPGKTLVDMSSISPIESKRFAKAVKEKGID 113 (291)
T ss_pred hcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCC
Confidence 788999999999999999999999999886544
No 38
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=99.34 E-value=5.7e-12 Score=120.05 Aligned_cols=114 Identities=14% Similarity=0.219 Sum_probs=95.3
Q ss_pred CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHHhcCcccc-ChhhhccCCCEEEEecCCchhhHhhcc--HHH
Q psy6348 99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAAKLNIASL-GLEDIWPLADYITVHTPLIPQTKNLIN--AEV 174 (333)
Q Consensus 99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~gv~~~-~l~ell~~aDvV~l~~P~t~~t~~li~--~~~ 174 (333)
++|||||+|.||..+|+.|...|++|++||++... +...+.|.... +..+++++||+|++|+|.....+.++. ...
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i 81 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENGV 81 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcccH
Confidence 48999999999999999999999999999997632 34445566543 788899999999999998777777764 346
Q ss_pred HhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEecc
Q psy6348 175 LKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDV 214 (333)
Q Consensus 175 ~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV 214 (333)
+..+++|.++||++++.+...+.+.+.+.+..+. .+|.
T Consensus 82 ~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~--~lda 119 (296)
T PRK15461 82 CEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFS--MMDV 119 (296)
T ss_pred hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCc--EEEc
Confidence 7789999999999999999999999999988765 4553
No 39
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.32 E-value=8.7e-12 Score=118.94 Aligned_cols=111 Identities=26% Similarity=0.340 Sum_probs=94.2
Q ss_pred EEEEEecChHHHHHHHHHhhCCCEEEEEcCCCC-HHHHHhcCcccc-ChhhhccC---CCEEEEecCCchhhHhhccHHH
Q psy6348 100 TLAVLGLGRIGREVALRMQAFGMKVIGFDPMVS-VEDAAKLNIASL-GLEDIWPL---ADYITVHTPLIPQTKNLINAEV 174 (333)
Q Consensus 100 tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~gv~~~-~l~ell~~---aDvV~l~~P~t~~t~~li~~~~ 174 (333)
+|||||+|+||+.+|++|...|++|++||++.+ .+...+.|+... ++++++++ +|+|++|+|..+.++.++ .+.
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~-~~i 80 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVI-KDL 80 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHH-HHH
Confidence 799999999999999999999999999999763 244455676654 78888776 699999999877888887 467
Q ss_pred HhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEec
Q psy6348 175 LKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALD 213 (333)
Q Consensus 175 ~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalD 213 (333)
++.+++|.++||+++....+..++.+.+++..+. .+|
T Consensus 81 ~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~--~vd 117 (299)
T PRK12490 81 YPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIH--YVD 117 (299)
T ss_pred hccCCCCCEEEECCCCCchhHHHHHHHHHHcCCe--EEe
Confidence 7889999999999999999999999999887764 466
No 40
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=99.29 E-value=1.1e-11 Score=119.54 Aligned_cols=95 Identities=24% Similarity=0.280 Sum_probs=80.6
Q ss_pred cccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC--CHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhcc
Q psy6348 94 TELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV--SVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLIN 171 (333)
Q Consensus 94 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~--~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~ 171 (333)
..|+||+|||||+|+||+++|+.|+.+|++|+++++.. +.+.+.+.|+...+.++++++||+|++++|.+.. ..+++
T Consensus 13 ~~L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~s~~eaa~~ADVVvLaVPd~~~-~~V~~ 91 (330)
T PRK05479 13 SLIKGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVLTVAEAAKWADVIMILLPDEVQ-AEVYE 91 (330)
T ss_pred hhhCCCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeCCHHHHHhcCCEEEEcCCHHHH-HHHHH
Confidence 46899999999999999999999999999999887653 3455666788777999999999999999997654 77777
Q ss_pred HHHHhccCCCcEEEEccCC
Q psy6348 172 AEVLKKCKKGVRVVNVARG 190 (333)
Q Consensus 172 ~~~~~~mk~gailIN~aRg 190 (333)
++.+..|++|++| -.+.|
T Consensus 92 ~~I~~~Lk~g~iL-~~a~G 109 (330)
T PRK05479 92 EEIEPNLKEGAAL-AFAHG 109 (330)
T ss_pred HHHHhcCCCCCEE-EECCC
Confidence 8888999999988 55555
No 41
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=99.26 E-value=2.5e-11 Score=120.47 Aligned_cols=104 Identities=23% Similarity=0.320 Sum_probs=89.5
Q ss_pred ccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhcc
Q psy6348 93 GTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV-SVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLIN 171 (333)
Q Consensus 93 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~ 171 (333)
+..+.|++++|+|+|.||+.+|++++++|++|+++|+.+ ..+.+...|+...++++.++.+|+|+.++. +.++++
T Consensus 197 ~~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~~~~e~v~~aDVVI~atG----~~~~i~ 272 (413)
T cd00401 197 DVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVMTMEEAVKEGDIFVTTTG----NKDIIT 272 (413)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEccHHHHHcCCCEEEECCC----CHHHHH
Confidence 456899999999999999999999999999999999876 456677889877778899999999998753 467888
Q ss_pred HHHHhccCCCcEEEEccCCcc-cchHhHHh
Q psy6348 172 AEVLKKCKKGVRVVNVARGGI-VDENALLD 200 (333)
Q Consensus 172 ~~~~~~mk~gailIN~aRg~~-vd~~aL~~ 200 (333)
...+..||+|++++|++++.+ +|..+|..
T Consensus 273 ~~~l~~mk~GgilvnvG~~~~eId~~~L~~ 302 (413)
T cd00401 273 GEHFEQMKDGAIVCNIGHFDVEIDVKGLKE 302 (413)
T ss_pred HHHHhcCCCCcEEEEeCCCCCccCHHHHHh
Confidence 888999999999999999876 77777654
No 42
>PLN02712 arogenate dehydrogenase
Probab=99.26 E-value=3e-11 Score=126.73 Aligned_cols=114 Identities=19% Similarity=0.262 Sum_probs=92.5
Q ss_pred CCccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCcccc-Chhhhcc-CCCEEEEecCCchhhHh
Q psy6348 91 YTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASL-GLEDIWP-LADYITVHTPLIPQTKN 168 (333)
Q Consensus 91 ~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~-~l~ell~-~aDvV~l~~P~t~~t~~ 168 (333)
..+.++.+++|||||+|.||+.+|+.++++|++|++||+....+.+.+.|+... ++++++. .+|+|++|+| ...+..
T Consensus 362 ~~~~~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~~~a~~~Gv~~~~~~~el~~~~aDvVILavP-~~~~~~ 440 (667)
T PLN02712 362 GCVNDGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYSDEAQKLGVSYFSDADDLCEEHPEVILLCTS-ILSTEK 440 (667)
T ss_pred hccCCCCCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHHHHHHHcCCeEeCCHHHHHhcCCCEEEECCC-hHHHHH
Confidence 457888999999999999999999999999999999999754345566777544 6888775 5999999999 467888
Q ss_pred hccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcC
Q psy6348 169 LINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCG 205 (333)
Q Consensus 169 li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g 205 (333)
++.+-....||+|++++|++.++-...+.+.+.+..+
T Consensus 441 vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~~ 477 (667)
T PLN02712 441 VLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQD 477 (667)
T ss_pred HHHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccCC
Confidence 8876555579999999999999866666666666543
No 43
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.25 E-value=4.3e-11 Score=114.24 Aligned_cols=112 Identities=24% Similarity=0.270 Sum_probs=94.4
Q ss_pred EEEEEecChHHHHHHHHHhhCCCEEEEEcCCCC-HHHHHhcCcccc-ChhhhccC---CCEEEEecCCchhhHhhccHHH
Q psy6348 100 TLAVLGLGRIGREVALRMQAFGMKVIGFDPMVS-VEDAAKLNIASL-GLEDIWPL---ADYITVHTPLIPQTKNLINAEV 174 (333)
Q Consensus 100 tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~gv~~~-~l~ell~~---aDvV~l~~P~t~~t~~li~~~~ 174 (333)
+|||||+|.||+.+|++|...|++|.+||++.. .+...+.|+... +++++++. +|+|++++|..+.++.++ ...
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~-~~l 80 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATI-DEL 80 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHH-HHH
Confidence 799999999999999999999999999999763 344455677655 78888775 699999999877778877 466
Q ss_pred HhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEecc
Q psy6348 175 LKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDV 214 (333)
Q Consensus 175 ~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV 214 (333)
++.+++|.++||++++.......+.+.+++..+. .+|.
T Consensus 81 ~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~--~~da 118 (301)
T PRK09599 81 APLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIH--FVDV 118 (301)
T ss_pred HhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCE--EEeC
Confidence 7889999999999999999999999999888775 4464
No 44
>PLN02256 arogenate dehydrogenase
Probab=99.23 E-value=2.7e-10 Score=109.18 Aligned_cols=108 Identities=19% Similarity=0.237 Sum_probs=85.7
Q ss_pred cCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCcccc-Chhhhc-cCCCEEEEecCCchhhHhhccHH
Q psy6348 96 LYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASL-GLEDIW-PLADYITVHTPLIPQTKNLINAE 173 (333)
Q Consensus 96 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~-~l~ell-~~aDvV~l~~P~t~~t~~li~~~ 173 (333)
-.+++|||||+|.||+.+|+.+++.|++|++||+....+.+.+.|+... ++++++ .++|+|++|+|. ..+..++.+-
T Consensus 34 ~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~~~a~~~gv~~~~~~~e~~~~~aDvVilavp~-~~~~~vl~~l 112 (304)
T PLN02256 34 SRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYSDIAAELGVSFFRDPDDFCEEHPDVVLLCTSI-LSTEAVLRSL 112 (304)
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHHHHHHHcCCeeeCCHHHHhhCCCCEEEEecCH-HHHHHHHHhh
Confidence 4678999999999999999999999999999998864455566677543 677776 479999999994 4677777543
Q ss_pred HHhccCCCcEEEEccCCcccchHhHHhhhhc
Q psy6348 174 VLKKCKKGVRVVNVARGGIVDENALLDSLKC 204 (333)
Q Consensus 174 ~~~~mk~gailIN~aRg~~vd~~aL~~aL~~ 204 (333)
....+++++++++++..+-...+++.+.+..
T Consensus 113 ~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~ 143 (304)
T PLN02256 113 PLQRLKRSTLFVDVLSVKEFPKNLLLQVLPE 143 (304)
T ss_pred hhhccCCCCEEEecCCchHHHHHHHHHhCCC
Confidence 3567899999999999766666677776654
No 45
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=99.22 E-value=6.1e-11 Score=112.92 Aligned_cols=112 Identities=18% Similarity=0.238 Sum_probs=93.5
Q ss_pred EEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCcccc-ChhhhccCCCEEEEecCCchhhHhhccH--HHHh
Q psy6348 100 TLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASL-GLEDIWPLADYITVHTPLIPQTKNLINA--EVLK 176 (333)
Q Consensus 100 tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~-~l~ell~~aDvV~l~~P~t~~t~~li~~--~~~~ 176 (333)
+|||||+|+||+.+|++|...|++|.+||+....+...+.|...+ +..++.++||+|++|+|..+..+.++.. ..++
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~~~~~~~~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~~~ 81 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAGHQLHVTTIGPVADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGCTK 81 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHhHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcchhc
Confidence 799999999999999999999999999998765444555676544 7888999999999999988787777632 3567
Q ss_pred ccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEec
Q psy6348 177 KCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALD 213 (333)
Q Consensus 177 ~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalD 213 (333)
.+++|.++|+++...+-....+.+.+++..+. .+|
T Consensus 82 ~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~--~vd 116 (292)
T PRK15059 82 ASLKGKTIVDMSSISPIETKRFARQVNELGGD--YLD 116 (292)
T ss_pred cCCCCCEEEECCCCCHHHHHHHHHHHHHcCCC--EEE
Confidence 78999999999999999999999998876553 455
No 46
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=99.19 E-value=1e-10 Score=118.51 Aligned_cols=119 Identities=11% Similarity=0.078 Sum_probs=98.6
Q ss_pred EEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHHh----cCcc----ccChhhhccC---CCEEEEecCCchhhH
Q psy6348 100 TLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAAK----LNIA----SLGLEDIWPL---ADYITVHTPLIPQTK 167 (333)
Q Consensus 100 tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~----~gv~----~~~l~ell~~---aDvV~l~~P~t~~t~ 167 (333)
+|||||+|.||+.||++|...|++|.+||++.+. +...+ .|.. ..+++|+++. +|+|++++|..+.++
T Consensus 8 ~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~aV~ 87 (493)
T PLN02350 8 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAGAPVD 87 (493)
T ss_pred CEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCcHHHH
Confidence 6999999999999999999999999999997643 22222 1542 2378888765 999999999999999
Q ss_pred hhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCC
Q psy6348 168 NLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEP 219 (333)
Q Consensus 168 ~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP 219 (333)
.++ ...++.+++|.++||++....-+...+.+.+++..+.....=|+..++
T Consensus 88 ~Vi-~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~ 138 (493)
T PLN02350 88 QTI-KALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEE 138 (493)
T ss_pred HHH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHH
Confidence 988 567888999999999999999999999999999888755555665554
No 47
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=99.13 E-value=4.4e-10 Score=107.21 Aligned_cols=108 Identities=19% Similarity=0.229 Sum_probs=87.5
Q ss_pred CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHHhcCccc-cChhh---hccCCCEEEEecCCchhhHhhccHH
Q psy6348 99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAAKLNIAS-LGLED---IWPLADYITVHTPLIPQTKNLINAE 173 (333)
Q Consensus 99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~gv~~-~~l~e---ll~~aDvV~l~~P~t~~t~~li~~~ 173 (333)
++|||||+|.||..+|++|...|++|.+||++... +...+.|... .++++ .+.++|+|++++|.. .++.++ ++
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~-~~~~v~-~~ 78 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHG-IVDAVL-EE 78 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCch-HHHHHH-HH
Confidence 37999999999999999999999999999997632 3444455433 24544 456789999999976 777777 56
Q ss_pred HHhccCCCcEEEEccCCcccchHhHHhhhhcCCce
Q psy6348 174 VLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCG 208 (333)
Q Consensus 174 ~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~ 208 (333)
..+.+++|.++||++.+...+...+.+.+++..+.
T Consensus 79 l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~ 113 (298)
T TIGR00872 79 LAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIH 113 (298)
T ss_pred HHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCe
Confidence 67889999999999999989999999988876664
No 48
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=99.11 E-value=2.1e-10 Score=99.50 Aligned_cols=93 Identities=28% Similarity=0.324 Sum_probs=70.2
Q ss_pred cCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC--CHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhccHH
Q psy6348 96 LYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV--SVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAE 173 (333)
Q Consensus 96 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~--~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~ 173 (333)
|+||+|+|||||..|++.|..|+..|++|++-.+.. +.+.+++.|++..+..|+.++||+|++.+|+ +....+..++
T Consensus 2 l~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~~~~eAv~~aDvV~~L~PD-~~q~~vy~~~ 80 (165)
T PF07991_consen 2 LKGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEVMSVAEAVKKADVVMLLLPD-EVQPEVYEEE 80 (165)
T ss_dssp HCTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECCEHHHHHHC-SEEEE-S-H-HHHHHHHHHH
T ss_pred cCCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeeccHHHHHhhCCEEEEeCCh-HHHHHHHHHH
Confidence 689999999999999999999999999999776654 4578889999999999999999999999994 3334455678
Q ss_pred HHhccCCCcEEEEccCC
Q psy6348 174 VLKKCKKGVRVVNVARG 190 (333)
Q Consensus 174 ~~~~mk~gailIN~aRg 190 (333)
....||+|..|+ .+.|
T Consensus 81 I~p~l~~G~~L~-fahG 96 (165)
T PF07991_consen 81 IAPNLKPGATLV-FAHG 96 (165)
T ss_dssp HHHHS-TT-EEE-ESSS
T ss_pred HHhhCCCCCEEE-eCCc
Confidence 888999999876 3444
No 49
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=99.10 E-value=3.9e-10 Score=108.50 Aligned_cols=95 Identities=28% Similarity=0.288 Sum_probs=75.0
Q ss_pred cCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC--CHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhccHH
Q psy6348 96 LYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV--SVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAE 173 (333)
Q Consensus 96 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~--~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~ 173 (333)
|+||+|||||+|+||+++|+.|+.+|++|+++++.. +.+.+.+.|++..+..+++++||+|++++|.... ...+.++
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~~~s~~ea~~~ADiVvLaVpp~~~-~~~v~~e 79 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFKVGTVEEAIPQADLIMNLLPDEVQ-HEVYEAE 79 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCEECCHHHHHhcCCEEEEeCCcHhH-HHHHHHH
Confidence 579999999999999999999999999988765443 3344556788767888999999999999995423 4455566
Q ss_pred HHhccCCCcEEEEccCCcc
Q psy6348 174 VLKKCKKGVRVVNVARGGI 192 (333)
Q Consensus 174 ~~~~mk~gailIN~aRg~~ 192 (333)
....|+++. +|.++.|=-
T Consensus 80 i~~~l~~g~-iVs~aaG~~ 97 (314)
T TIGR00465 80 IQPLLKEGK-TLGFSHGFN 97 (314)
T ss_pred HHhhCCCCc-EEEEeCCcc
Confidence 778888886 788888743
No 50
>PLN02858 fructose-bisphosphate aldolase
Probab=99.09 E-value=4.7e-10 Score=125.75 Aligned_cols=118 Identities=16% Similarity=0.095 Sum_probs=99.7
Q ss_pred CCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHHhcCcccc-ChhhhccCCCEEEEecCCchhhHhhc--cH
Q psy6348 97 YGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAAKLNIASL-GLEDIWPLADYITVHTPLIPQTKNLI--NA 172 (333)
Q Consensus 97 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~gv~~~-~l~ell~~aDvV~l~~P~t~~t~~li--~~ 172 (333)
..++||+||+|.||..||++|...|++|.+||++... +...+.|...+ ++.|+.++||+|++|+|..+..+.++ ..
T Consensus 3 ~~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~~ 82 (1378)
T PLN02858 3 SAGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGDE 82 (1378)
T ss_pred CCCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhchh
Confidence 3578999999999999999999999999999997633 44556677655 89999999999999999999988887 35
Q ss_pred HHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEecc
Q psy6348 173 EVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDV 214 (333)
Q Consensus 173 ~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV 214 (333)
..++.+++|.++|++++..+-....+.+.+++..-....+|.
T Consensus 83 g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lDa 124 (1378)
T PLN02858 83 GAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVDA 124 (1378)
T ss_pred hHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEEc
Confidence 678889999999999999999999999999876621235664
No 51
>KOG0409|consensus
Probab=99.09 E-value=3e-10 Score=106.77 Aligned_cols=115 Identities=14% Similarity=0.196 Sum_probs=99.4
Q ss_pred CCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCC-HHHHHhcCcccc-ChhhhccCCCEEEEecCCchhhHhhcc--H
Q psy6348 97 YGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVS-VEDAAKLNIASL-GLEDIWPLADYITVHTPLIPQTKNLIN--A 172 (333)
Q Consensus 97 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~gv~~~-~l~ell~~aDvV~l~~P~t~~t~~li~--~ 172 (333)
..++||+||+|.||..|+..|...|++|++||++.+ .....+.|.+.. +..|+.+.||+|+.++|...+.+.++. .
T Consensus 34 s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v~~g~~ 113 (327)
T KOG0409|consen 34 SKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPKDVKDVLLGKS 113 (327)
T ss_pred ccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCChHhhHHHhcCCC
Confidence 468999999999999999999999999999999874 456677788776 799999999999999999999888874 3
Q ss_pred HHHhccCCCcEE-EEccCCcccchHhHHhhhhcCCceEEEec
Q psy6348 173 EVLKKCKKGVRV-VNVARGGIVDENALLDSLKCGHCGGAALD 213 (333)
Q Consensus 173 ~~~~~mk~gail-IN~aRg~~vd~~aL~~aL~~g~i~gaalD 213 (333)
..++.+++|... |+.+.-+..-...|.++++....+ .+|
T Consensus 114 Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~--~vD 153 (327)
T KOG0409|consen 114 GVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGR--FVD 153 (327)
T ss_pred cceeeccCCCceEEeccccCHHHHHHHHHHHHhCCCe--EEe
Confidence 467778888777 999999999999999999987664 455
No 52
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=99.06 E-value=5.5e-10 Score=105.92 Aligned_cols=109 Identities=19% Similarity=0.208 Sum_probs=89.9
Q ss_pred EEecChHHHHHHHHHhhCCCEEEEEcCCCC-HHHHHhcCcccc-ChhhhccCCCEEEEecCCchhhHhhcc--HHHHhcc
Q psy6348 103 VLGLGRIGREVALRMQAFGMKVIGFDPMVS-VEDAAKLNIASL-GLEDIWPLADYITVHTPLIPQTKNLIN--AEVLKKC 178 (333)
Q Consensus 103 IIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~gv~~~-~l~ell~~aDvV~l~~P~t~~t~~li~--~~~~~~m 178 (333)
|||+|.||..+|++|...|++|++||++.. .+...+.|+... ++.+++++||+|++|+|.....+.++. ....+.+
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~~ 80 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPKV 80 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhcC
Confidence 689999999999999999999999999763 344555676544 788999999999999998777777763 4566789
Q ss_pred CCCcEEEEccCCcccchHhHHhhhhcCCceEEEec
Q psy6348 179 KKGVRVVNVARGGIVDENALLDSLKCGHCGGAALD 213 (333)
Q Consensus 179 k~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalD 213 (333)
++|.++||++...+-....+.+.+++..+. .+|
T Consensus 81 ~~g~~vid~st~~p~~~~~~~~~~~~~g~~--~vd 113 (288)
T TIGR01692 81 AKGSLLIDCSTIDPDSARKLAELAAAHGAV--FMD 113 (288)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHcCCc--EEE
Confidence 999999999998888888898888875554 456
No 53
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=99.06 E-value=2.1e-10 Score=113.76 Aligned_cols=103 Identities=24% Similarity=0.300 Sum_probs=81.9
Q ss_pred cccccCCC-c-cccCCCEEEEEecChHHHHHHHHHhhCCCEEEE------EcCCC-CHHHHHhcCccccChhhhccCCCE
Q psy6348 85 KWDRKLYT-G-TELYGKTLAVLGLGRIGREVALRMQAFGMKVIG------FDPMV-SVEDAAKLNIASLGLEDIWPLADY 155 (333)
Q Consensus 85 ~w~~~~~~-g-~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~------~d~~~-~~~~a~~~gv~~~~l~ell~~aDv 155 (333)
-|+|..|. + ..|+||||+|||+|.+|+.-|..|+..|++|++ .|... +.+.+.+.|+...+++|++++||+
T Consensus 21 ~~~r~ef~~~~~~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v~~~~Ea~~~ADv 100 (487)
T PRK05225 21 FMDRDEFADGASYLKGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKVGTYEELIPQADL 100 (487)
T ss_pred ecchhhccchhHHhCCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCCccCCHHHHHHhCCE
Confidence 37776663 3 579999999999999999888888888888772 22222 445566678888899999999999
Q ss_pred EEEecCCchhhHhhccHHHHhccCCCcEEEEccCC
Q psy6348 156 ITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARG 190 (333)
Q Consensus 156 V~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg 190 (333)
|++.+|++ . ++.+.++.++.||+|+.|. .|.|
T Consensus 101 VviLlPDt-~-q~~v~~~i~p~LK~Ga~L~-fsHG 132 (487)
T PRK05225 101 VINLTPDK-Q-HSDVVRAVQPLMKQGAALG-YSHG 132 (487)
T ss_pred EEEcCChH-H-HHHHHHHHHhhCCCCCEEE-ecCC
Confidence 99999988 3 7777799999999999876 4444
No 54
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=99.05 E-value=9.6e-10 Score=111.11 Aligned_cols=119 Identities=15% Similarity=0.160 Sum_probs=96.3
Q ss_pred CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHHh----cCcc---ccChhhhcc---CCCEEEEecCCchhhH
Q psy6348 99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAAK----LNIA---SLGLEDIWP---LADYITVHTPLIPQTK 167 (333)
Q Consensus 99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~----~gv~---~~~l~ell~---~aDvV~l~~P~t~~t~ 167 (333)
.+|||||+|.||+.+|++|...|++|.+||++.+. +...+ .|.. ..+++|++. ++|+|++++|..+.++
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v~ 81 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEAVD 81 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHHHH
Confidence 47999999999999999999999999999997643 22222 1422 237888876 5899999999888999
Q ss_pred hhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCC
Q psy6348 168 NLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEE 218 (333)
Q Consensus 168 ~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~E 218 (333)
.++ .+.++.+++|.++||++.+..-+...+.+.+.+..+.....=|...+
T Consensus 82 ~vi-~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~ 131 (470)
T PTZ00142 82 ETI-DNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGE 131 (470)
T ss_pred HHH-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCH
Confidence 988 56778899999999999999999999999999988864444444443
No 55
>PLN02858 fructose-bisphosphate aldolase
Probab=99.05 E-value=8.1e-10 Score=123.85 Aligned_cols=115 Identities=15% Similarity=0.123 Sum_probs=96.5
Q ss_pred CCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHHhcCccc-cChhhhccCCCEEEEecCCchhhHhhc--cHH
Q psy6348 98 GKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAAKLNIAS-LGLEDIWPLADYITVHTPLIPQTKNLI--NAE 173 (333)
Q Consensus 98 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~gv~~-~~l~ell~~aDvV~l~~P~t~~t~~li--~~~ 173 (333)
.++|||||+|.||..||++|...|++|++||++... +.....|... .+..+++++||+|++|+|..++++.++ ...
T Consensus 324 ~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~g 403 (1378)
T PLN02858 324 VKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDLG 403 (1378)
T ss_pred CCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchhh
Confidence 488999999999999999999999999999997633 3445556544 378899999999999999988888887 345
Q ss_pred HHhccCCCcEEEEccCCcccchHhHHhhhhc--CCceEEEecc
Q psy6348 174 VLKKCKKGVRVVNVARGGIVDENALLDSLKC--GHCGGAALDV 214 (333)
Q Consensus 174 ~~~~mk~gailIN~aRg~~vd~~aL~~aL~~--g~i~gaalDV 214 (333)
.++.+++|.++|+++...+-..+.+.+.+++ ..+ ..+|.
T Consensus 404 ~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~--~~lDA 444 (1378)
T PLN02858 404 AVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDI--KLVDA 444 (1378)
T ss_pred HHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCc--EEEEc
Confidence 7888999999999999999999999999987 444 35553
No 56
>PRK08655 prephenate dehydrogenase; Provisional
Probab=99.04 E-value=3.5e-09 Score=106.27 Aligned_cols=133 Identities=23% Similarity=0.232 Sum_probs=96.6
Q ss_pred CEEEEEe-cChHHHHHHHHHhhCCCEEEEEcCCCCH--HHHHhcCcccc-ChhhhccCCCEEEEecCCchhhHhhccHHH
Q psy6348 99 KTLAVLG-LGRIGREVALRMQAFGMKVIGFDPMVSV--EDAAKLNIASL-GLEDIWPLADYITVHTPLIPQTKNLINAEV 174 (333)
Q Consensus 99 ktvGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~~~--~~a~~~gv~~~-~l~ell~~aDvV~l~~P~t~~t~~li~~~~ 174 (333)
++|+||| +|.||+.+|+.|+..|++|.+||+.... +.+.+.|+... +.++.+.+||+|++|+|. ..+..++ .+.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlavp~-~~~~~vl-~~l 78 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISVPI-NVTEDVI-KEV 78 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEecCH-HHHHHHH-HHH
Confidence 4799997 8999999999999999999999987633 34555677544 678889999999999995 4556665 556
Q ss_pred HhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCccchhhcCCCcEEEccCC
Q psy6348 175 LKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHL 240 (333)
Q Consensus 175 ~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~L~~~pnvi~TPHi 240 (333)
.+.+++++++++++..+....+++.+.+..+. . .+.. -|...+ ..+++....+++||+-
T Consensus 79 ~~~l~~~~iViDvsSvK~~~~~~l~~~~~~~~-~--~V~~---HPmaGp-~~~~~~g~~~il~p~~ 137 (437)
T PRK08655 79 APHVKEGSLLMDVTSVKERPVEAMEEYAPEGV-E--ILPT---HPMFGP-RTPSLKGQVVILTPTE 137 (437)
T ss_pred HhhCCCCCEEEEcccccHHHHHHHHHhcCCCC-E--EEEc---CCCCCC-CCcccCCCEEEEecCC
Confidence 67799999999999876666666766654421 1 1221 222111 1256677889999965
No 57
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=99.01 E-value=6.2e-09 Score=98.33 Aligned_cols=138 Identities=14% Similarity=0.136 Sum_probs=88.3
Q ss_pred CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHhcCcc-cc-ChhhhccCCCEEEEecCCchhhHhhccHHHH
Q psy6348 99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV-SVEDAAKLNIA-SL-GLEDIWPLADYITVHTPLIPQTKNLINAEVL 175 (333)
Q Consensus 99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~gv~-~~-~l~ell~~aDvV~l~~P~t~~t~~li~~~~~ 175 (333)
++|||||+|.||+++|..|+..|++|++||+.. ..+.+.+.|.. .. +..+.+++||+|++|+|.. ....++ ++..
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilavp~~-~~~~~~-~~l~ 78 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILALPIG-LLLPPS-EQLI 78 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcCCHH-HHHHHH-HHHH
Confidence 379999999999999999999999999999875 33445555542 12 3335688999999999943 334443 5666
Q ss_pred hccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEecc-CCCCCCC-CccchhhcCCCcEEEccCCCC
Q psy6348 176 KKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDV-FCEEPPK-SEQTFELIKHPKVIVTPHLGA 242 (333)
Q Consensus 176 ~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV-~~~EP~~-~~~~~~L~~~pnvi~TPHi~~ 242 (333)
+.+++++++++++.-..-. .+++........+... +..|... ......|+..+++++||+-..
T Consensus 79 ~~l~~~~ii~d~~Svk~~~----~~~~~~~~~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p~~~~ 143 (279)
T PRK07417 79 PALPPEAIVTDVGSVKAPI----VEAWEKLHPRFVGSHPMAGTAESGVEAGQRGLFKNRPWVLTPTENT 143 (279)
T ss_pred HhCCCCcEEEeCcchHHHH----HHHHHHhhCCceeeCCcCCCCcchHHHhhHHHhCCCcEEEccCCCC
Confidence 7789999999998765332 2222221111122221 1222110 001123777889999997653
No 58
>PLN02712 arogenate dehydrogenase
Probab=99.01 E-value=1.4e-09 Score=114.27 Aligned_cols=108 Identities=22% Similarity=0.266 Sum_probs=83.5
Q ss_pred cCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCcccc-Chhhhc-cCCCEEEEecCCchhhHhhccHH
Q psy6348 96 LYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASL-GLEDIW-PLADYITVHTPLIPQTKNLINAE 173 (333)
Q Consensus 96 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~-~l~ell-~~aDvV~l~~P~t~~t~~li~~~ 173 (333)
-..++|||||+|+||+.+|+.++.+|++|++||+....+.+.+.|+... ++++++ .++|+|++|+|. ..+..++..-
T Consensus 50 ~~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~A~~~Gv~~~~d~~e~~~~~aDvViLavP~-~~~~~vl~~l 128 (667)
T PLN02712 50 TTQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHSLAARSLGVSFFLDPHDLCERHPDVILLCTSI-ISTENVLKSL 128 (667)
T ss_pred CCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcCCEEeCCHHHHhhcCCCEEEEcCCH-HHHHHHHHhh
Confidence 3456899999999999999999999999999999765556667787654 677765 569999999994 5778887664
Q ss_pred HHhccCCCcEEEEccCCcccchHhHHhhhhc
Q psy6348 174 VLKKCKKGVRVVNVARGGIVDENALLDSLKC 204 (333)
Q Consensus 174 ~~~~mk~gailIN~aRg~~vd~~aL~~aL~~ 204 (333)
.+..+++|++++|++.-+..-.+++.+.+..
T Consensus 129 ~~~~l~~g~iVvDv~SvK~~~~~~l~~~l~~ 159 (667)
T PLN02712 129 PLQRLKRNTLFVDVLSVKEFAKNLLLDYLPE 159 (667)
T ss_pred hhhcCCCCeEEEECCCCcHHHHHHHHHhcCC
Confidence 4567999999999986654333445555543
No 59
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=98.99 E-value=1e-08 Score=98.06 Aligned_cols=147 Identities=20% Similarity=0.227 Sum_probs=94.4
Q ss_pred CCEEEEEecChHHHHHHHHHhhCCC--EEEEEcCCC-CHHHHHhcCcc---ccChhhhccCCCEEEEecCCchhhHhhcc
Q psy6348 98 GKTLAVLGLGRIGREVALRMQAFGM--KVIGFDPMV-SVEDAAKLNIA---SLGLEDIWPLADYITVHTPLIPQTKNLIN 171 (333)
Q Consensus 98 gktvGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~-~~~~a~~~gv~---~~~l~ell~~aDvV~l~~P~t~~t~~li~ 171 (333)
.++|+|||+|.||+.+|+.++..|. +|++||+.. ..+.+.+.|+. ..++++.+++||+|++++|.. .+..++
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~~-~~~~v~- 83 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPVG-ASGAVA- 83 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCHH-HHHHHH-
Confidence 4689999999999999999998885 899999976 33445556642 236778899999999999953 334443
Q ss_pred HHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEe-ccCCCCCC-CCccchhhcCCCcEEEccCCCCCcHHHH
Q psy6348 172 AEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAAL-DVFCEEPP-KSEQTFELIKHPKVIVTPHLGASTKEAQ 248 (333)
Q Consensus 172 ~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaal-DV~~~EP~-~~~~~~~L~~~pnvi~TPHi~~~t~ea~ 248 (333)
++....++++.++++++....-..+++.+.+.. .+..... =++..|-. +.....+|+...++++||+-++ +.++.
T Consensus 84 ~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~~-~~~~v~~hPm~g~e~~G~~~a~~~l~~g~~~~l~~~~~~-~~~~~ 160 (307)
T PRK07502 84 AEIAPHLKPGAIVTDVGSVKASVIAAMAPHLPE-GVHFIPGHPLAGTEHSGPDAGFAELFENRWCILTPPEGT-DPAAV 160 (307)
T ss_pred HHHHhhCCCCCEEEeCccchHHHHHHHHHhCCC-CCeEEeCCCCCCCcccchhhcCHHHHCCCeEEEeCCCCC-CHHHH
Confidence 455567899999999977553333444444332 2221221 12222210 0111136777788999997654 34433
No 60
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=98.97 E-value=3.3e-09 Score=107.22 Aligned_cols=117 Identities=17% Similarity=0.189 Sum_probs=91.5
Q ss_pred EEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHHhc---C--ccc-cChhhhc---cCCCEEEEecCCchhhHhh
Q psy6348 100 TLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAAKL---N--IAS-LGLEDIW---PLADYITVHTPLIPQTKNL 169 (333)
Q Consensus 100 tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~---g--v~~-~~l~ell---~~aDvV~l~~P~t~~t~~l 169 (333)
.|||||+|.||+.+|++|...|++|.+||++.+. +...+. | +.. .+++++. +++|+|++++|..+.+..+
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~V 80 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAV 80 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHHH
Confidence 3899999999999999999999999999997633 333323 2 322 2566655 5799999999987888888
Q ss_pred ccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCC
Q psy6348 170 INAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCE 217 (333)
Q Consensus 170 i~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~ 217 (333)
+ .+.++.+++|.++||++....-+...+.+.+++..+.....=|...
T Consensus 81 i-~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG 127 (467)
T TIGR00873 81 I-NQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGG 127 (467)
T ss_pred H-HHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCC
Confidence 8 4677889999999999999999999999999887775333334443
No 61
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=98.95 E-value=1.2e-08 Score=96.96 Aligned_cols=102 Identities=22% Similarity=0.203 Sum_probs=77.0
Q ss_pred CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HH-----------HHhcC-------------ccccChhhhccCC
Q psy6348 99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-ED-----------AAKLN-------------IASLGLEDIWPLA 153 (333)
Q Consensus 99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~-----------a~~~g-------------v~~~~l~ell~~a 153 (333)
++|||||+|.||..+|..+...|++|++||++... +. ..+.| ....+..+.+++|
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a 84 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEELRDA 84 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHhCCC
Confidence 68999999999999999999999999999987632 21 11112 1222333568999
Q ss_pred CEEEEecCCchhhHhhccHHHHhccCCCcEEE-EccCCcccchHhHHhhhh
Q psy6348 154 DYITVHTPLIPQTKNLINAEVLKKCKKGVRVV-NVARGGIVDENALLDSLK 203 (333)
Q Consensus 154 DvV~l~~P~t~~t~~li~~~~~~~mk~gailI-N~aRg~~vd~~aL~~aL~ 203 (333)
|+|+.|+|..++.+..+-.+..+.++++++|+ |+|.-. ...+.+.+.
T Consensus 85 D~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~---~~~l~~~~~ 132 (295)
T PLN02545 85 DFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSIS---ITRLASATQ 132 (295)
T ss_pred CEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCC---HHHHHhhcC
Confidence 99999999999988888777778899999887 666654 344555554
No 62
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.95 E-value=1.1e-08 Score=98.76 Aligned_cols=116 Identities=18% Similarity=0.203 Sum_probs=86.7
Q ss_pred CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHH-----------hcC---------cccc-ChhhhccCCCEE
Q psy6348 99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAA-----------KLN---------IASL-GLEDIWPLADYI 156 (333)
Q Consensus 99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~-----------~~g---------v~~~-~l~ell~~aDvV 156 (333)
++|||||.|.||..+|..+...|++|..||+.... +.+. +.+ ++.. ++++.+++||+|
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDlV 87 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADFI 87 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCEE
Confidence 68999999999999999999999999999997532 1111 111 1222 688999999999
Q ss_pred EEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCC
Q psy6348 157 TVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCE 217 (333)
Q Consensus 157 ~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~ 217 (333)
+-++|...+.+..+-++.-+.++++++| .++.. -+...++.++++. .=+..++..|.+
T Consensus 88 iEavpE~l~vK~~lf~~l~~~~~~~aIl-aSnTS-~l~~s~la~~~~~-p~R~~g~HffnP 145 (321)
T PRK07066 88 QESAPEREALKLELHERISRAAKPDAII-ASSTS-GLLPTDFYARATH-PERCVVGHPFNP 145 (321)
T ss_pred EECCcCCHHHHHHHHHHHHHhCCCCeEE-EECCC-ccCHHHHHHhcCC-cccEEEEecCCc
Confidence 9999999999998888888999999844 44444 3466777777753 233356666543
No 63
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=98.94 E-value=1.3e-08 Score=101.66 Aligned_cols=106 Identities=22% Similarity=0.213 Sum_probs=77.8
Q ss_pred CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccc---cChhhh---------------ccCCCEEEEec
Q psy6348 99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIAS---LGLEDI---------------WPLADYITVHT 160 (333)
Q Consensus 99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~---~~l~el---------------l~~aDvV~l~~ 160 (333)
++|+|||+|.||..+|..|+..|++|++||+....-.....|... ..++++ +++||+|++|+
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~v 83 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIAV 83 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEEc
Confidence 689999999999999999999999999999876433332333211 123333 34799999999
Q ss_pred CCc------hhhHhhc--cHHHHhccCCCcEEEEccCCcccchHhHHhhhhc
Q psy6348 161 PLI------PQTKNLI--NAEVLKKCKKGVRVVNVARGGIVDENALLDSLKC 204 (333)
Q Consensus 161 P~t------~~t~~li--~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~ 204 (333)
|.. ++...+. -+...+.+++|+++|+.|.-.+-..+.+...+.+
T Consensus 84 ptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~ 135 (415)
T PRK11064 84 PTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAE 135 (415)
T ss_pred CCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHH
Confidence 953 1222222 2556778999999999999888888888877765
No 64
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.93 E-value=2.1e-08 Score=95.05 Aligned_cols=113 Identities=19% Similarity=0.171 Sum_probs=81.9
Q ss_pred CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHH-------hcC-----------------ccc-cChhhhccC
Q psy6348 99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAA-------KLN-----------------IAS-LGLEDIWPL 152 (333)
Q Consensus 99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~-------~~g-----------------v~~-~~l~ell~~ 152 (333)
++|+|||+|.||..+|..+...|++|++||+.... +.+. ..+ +.. .++++.+++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 81 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVAD 81 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcC
Confidence 58999999999999999999999999999987522 2211 011 122 267789999
Q ss_pred CCEEEEecCCchhhHhhccHHHHhccCCCcEE-EEccCCcccchHhHHhhhhcCCceEEEeccC
Q psy6348 153 ADYITVHTPLIPQTKNLINAEVLKKCKKGVRV-VNVARGGIVDENALLDSLKCGHCGGAALDVF 215 (333)
Q Consensus 153 aDvV~l~~P~t~~t~~li~~~~~~~mk~gail-IN~aRg~~vd~~aL~~aL~~g~i~gaalDV~ 215 (333)
||+|+.|+|...+.+..+-.+..+.+++++++ +|+|.-.+ ..+.+.++. .-+..++..|
T Consensus 82 aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~---~~l~~~~~~-~~r~~g~h~~ 141 (288)
T PRK09260 82 ADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSP---TEIASFTKR-PERVIAMHFF 141 (288)
T ss_pred CCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH---HHHHhhcCC-cccEEEEecC
Confidence 99999999987777666656666778999877 78877555 445555543 2233566666
No 65
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=98.92 E-value=1.1e-08 Score=102.48 Aligned_cols=136 Identities=17% Similarity=0.147 Sum_probs=92.4
Q ss_pred CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCcc-----------------ccChhhhccCCCEEEEecC
Q psy6348 99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIA-----------------SLGLEDIWPLADYITVHTP 161 (333)
Q Consensus 99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~-----------------~~~l~ell~~aDvV~l~~P 161 (333)
.+|||||+|.||..+|..+.. |++|++||+....-.....|.. ..+..+.+++||++++|+|
T Consensus 7 mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvii~Vp 85 (425)
T PRK15182 7 VKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELKNGVDVNLETTEEELREARYLKFTSEIEKIKECNFYIITVP 85 (425)
T ss_pred CeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEEEEcC
Confidence 689999999999999999877 7999999997644222223332 2233456899999999999
Q ss_pred Cc------hhhHhhc--cHHHHhccCCCcEEEEccCCcccchHhHHhhhhcC--CceEEEec---cCCCCCCCC-ccchh
Q psy6348 162 LI------PQTKNLI--NAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCG--HCGGAALD---VFCEEPPKS-EQTFE 227 (333)
Q Consensus 162 ~t------~~t~~li--~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g--~i~gaalD---V~~~EP~~~-~~~~~ 227 (333)
.. ++...+. .+...+.+++|.++|+.|+-.+-..+.+++.+... .+. +.-| +|.+||... .....
T Consensus 86 tp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~-~~~~~~~~~~PE~v~~G~a~~~ 164 (425)
T PRK15182 86 TPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMT-FNQDFYVGYSPERINPGDKKHR 164 (425)
T ss_pred CCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCC-cCCCeeEeeCCCcCCCCccccc
Confidence 55 2334554 34567889999999999999998888764444332 221 1112 366788542 11245
Q ss_pred hcCCCcEEE
Q psy6348 228 LIKHPKVIV 236 (333)
Q Consensus 228 L~~~pnvi~ 236 (333)
+...|+++.
T Consensus 165 ~~~~~riv~ 173 (425)
T PRK15182 165 LTNIKKITS 173 (425)
T ss_pred ccCCCeEEE
Confidence 667777753
No 66
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=98.92 E-value=2.4e-09 Score=84.52 Aligned_cols=88 Identities=23% Similarity=0.299 Sum_probs=65.5
Q ss_pred EEEEEecChHHHHHHHHHhhCC---CEEE-EEcCCCCH--HHHHhcCcccc--ChhhhccCCCEEEEecCCchhhHhhcc
Q psy6348 100 TLAVLGLGRIGREVALRMQAFG---MKVI-GFDPMVSV--EDAAKLNIASL--GLEDIWPLADYITVHTPLIPQTKNLIN 171 (333)
Q Consensus 100 tvGIIGlG~IG~~vA~~l~~~G---~~V~-~~d~~~~~--~~a~~~gv~~~--~l~ell~~aDvV~l~~P~t~~t~~li~ 171 (333)
||||||+|+||+.+++.+...| .+|+ +++++... +.+++.++... +..+++++||+|++++|. .....++
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav~p-~~~~~v~- 78 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAVKP-QQLPEVL- 78 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S-G-GGHHHHH-
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEECH-HHHHHHH-
Confidence 7999999999999999999999 9999 55886632 33456665433 689999999999999994 3334443
Q ss_pred HHHHhccCCCcEEEEccCC
Q psy6348 172 AEVLKKCKKGVRVVNVARG 190 (333)
Q Consensus 172 ~~~~~~mk~gailIN~aRg 190 (333)
.+. ....++.++|++.-|
T Consensus 79 ~~i-~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 79 SEI-PHLLKGKLVISIAAG 96 (96)
T ss_dssp HHH-HHHHTTSEEEEESTT
T ss_pred HHH-hhccCCCEEEEeCCC
Confidence 333 667889999998654
No 67
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.90 E-value=6.1e-09 Score=99.72 Aligned_cols=82 Identities=23% Similarity=0.256 Sum_probs=68.1
Q ss_pred CCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhccHHHHh
Q psy6348 97 YGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLK 176 (333)
Q Consensus 97 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~ 176 (333)
.+++|||||+|.||+.+|++|...|++|.+|++... .+++++++++|+|++++|. +..+.++.. ...
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~-----------~~~~~~~~~advvi~~vp~-~~~~~v~~~-l~~ 69 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG-----------LSLAAVLADADVIVSAVSM-KGVRPVAEQ-VQA 69 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC-----------CCHHHHHhcCCEEEEECCh-HHHHHHHHH-HHH
Confidence 457899999999999999999999999999998642 3577888999999999996 577777633 323
Q ss_pred -ccCCCcEEEEccCCc
Q psy6348 177 -KCKKGVRVVNVARGG 191 (333)
Q Consensus 177 -~mk~gailIN~aRg~ 191 (333)
.+++++++|++++|-
T Consensus 70 ~~~~~~~ivi~~s~gi 85 (308)
T PRK14619 70 LNLPPETIIVTATKGL 85 (308)
T ss_pred hcCCCCcEEEEeCCcc
Confidence 478999999998853
No 68
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=98.90 E-value=3e-08 Score=93.95 Aligned_cols=136 Identities=22% Similarity=0.265 Sum_probs=93.6
Q ss_pred CCEEEEEecChHHHHHHHHHhhCCCEEEE--EcCCC-CHHHHHhcCcccc---C-hhhhccCCCEEEEecCCchhhHhhc
Q psy6348 98 GKTLAVLGLGRIGREVALRMQAFGMKVIG--FDPMV-SVEDAAKLNIASL---G-LEDIWPLADYITVHTPLIPQTKNLI 170 (333)
Q Consensus 98 gktvGIIGlG~IG~~vA~~l~~~G~~V~~--~d~~~-~~~~a~~~gv~~~---~-l~ell~~aDvV~l~~P~t~~t~~li 170 (333)
.++|+|+|+|.||+.+|+.++..|+.|.+ +|++. ..+.+.++|+... + ..+...+||+|++++|- ..|..++
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi-~~~~~~l 81 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPI-EATEEVL 81 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccH-HHHHHHH
Confidence 46899999999999999999999998755 45543 2344555676432 2 36778889999999994 4566665
Q ss_pred cHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCc-cchhhcCCCcEEEccCCC
Q psy6348 171 NAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSE-QTFELIKHPKVIVTPHLG 241 (333)
Q Consensus 171 ~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~-~~~~L~~~pnvi~TPHi~ 241 (333)
++....+|+|+++++++.-+---.+++.+.+..+. ...+. =|-..+ ...+++..-.+++||.-.
T Consensus 82 -~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~-~~vg~-----HPM~G~~~~~~lf~~~~~vltp~~~ 146 (279)
T COG0287 82 -KELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDV-RFVGG-----HPMFGPEADAGLFENAVVVLTPSEG 146 (279)
T ss_pred -HHhcccCCCCCEEEecccccHHHHHHHHHhccCCC-eeEec-----CCCCCCcccccccCCCEEEEcCCCC
Confidence 45555899999999998877666666665554432 22222 222111 124688888999999644
No 69
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=98.88 E-value=1.7e-08 Score=91.11 Aligned_cols=109 Identities=24% Similarity=0.253 Sum_probs=80.7
Q ss_pred ccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHH-HhcCccccChhhhcc-CCCEEEEecCCchhhHhh
Q psy6348 93 GTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDA-AKLNIASLGLEDIWP-LADYITVHTPLIPQTKNL 169 (333)
Q Consensus 93 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a-~~~gv~~~~l~ell~-~aDvV~l~~P~t~~t~~l 169 (333)
+.++.||+++|+|+|+||+.+|++|..+|++|+++|+.... +.. ...|.+.++.++++. +||+++.|.. .++
T Consensus 23 ~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v~~~~l~~~~~Dv~vp~A~-----~~~ 97 (200)
T cd01075 23 TDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVVAPEEIYSVDADVFAPCAL-----GGV 97 (200)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEEcchhhccccCCEEEeccc-----ccc
Confidence 56789999999999999999999999999999999987532 222 333666666677775 7999886654 467
Q ss_pred ccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCce
Q psy6348 170 INAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCG 208 (333)
Q Consensus 170 i~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~ 208 (333)
++.+.++.|+. .+++.-+-+.+-+ ..-.+.|++..+.
T Consensus 98 I~~~~~~~l~~-~~v~~~AN~~~~~-~~~~~~L~~~Gi~ 134 (200)
T cd01075 98 INDDTIPQLKA-KAIAGAANNQLAD-PRHGQMLHERGIL 134 (200)
T ss_pred cCHHHHHHcCC-CEEEECCcCccCC-HhHHHHHHHCCCE
Confidence 88888888864 4666666666654 4455666666664
No 70
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=98.88 E-value=5.8e-09 Score=100.21 Aligned_cols=101 Identities=27% Similarity=0.375 Sum_probs=85.4
Q ss_pred ccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhccHH
Q psy6348 95 ELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV-SVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAE 173 (333)
Q Consensus 95 ~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~ 173 (333)
-+.||++.|.|||.+|+.+|.++++.|++|+++.-.+ ..-.+...|++..+++++.+.+|+++.++ .++++|..+
T Consensus 206 liaGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf~V~~m~~Aa~~gDifiT~T----GnkdVi~~e 281 (420)
T COG0499 206 LLAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMDGFRVMTMEEAAKTGDIFVTAT----GNKDVIRKE 281 (420)
T ss_pred eecCceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhcCcEEEEhHHhhhcCCEEEEcc----CCcCccCHH
Confidence 4789999999999999999999999999999986554 22345566999899999999999999986 568999999
Q ss_pred HHhccCCCcEEEEccCCcc-cchHhHH
Q psy6348 174 VLKKCKKGVRVVNVARGGI-VDENALL 199 (333)
Q Consensus 174 ~~~~mk~gailIN~aRg~~-vd~~aL~ 199 (333)
.|..||+|+++.|.+.-.+ ||...|.
T Consensus 282 h~~~MkDgaIl~N~GHFd~EI~~~~L~ 308 (420)
T COG0499 282 HFEKMKDGAILANAGHFDVEIDVAGLE 308 (420)
T ss_pred HHHhccCCeEEecccccceeccHHHHH
Confidence 9999999999999986554 5555544
No 71
>PLN02688 pyrroline-5-carboxylate reductase
Probab=98.87 E-value=1.8e-08 Score=94.09 Aligned_cols=102 Identities=17% Similarity=0.208 Sum_probs=78.3
Q ss_pred CEEEEEecChHHHHHHHHHhhCCC----EEEEE-cCCCCH-HHHHhcCcccc-ChhhhccCCCEEEEecCCchhhHhhcc
Q psy6348 99 KTLAVLGLGRIGREVALRMQAFGM----KVIGF-DPMVSV-EDAAKLNIASL-GLEDIWPLADYITVHTPLIPQTKNLIN 171 (333)
Q Consensus 99 ktvGIIGlG~IG~~vA~~l~~~G~----~V~~~-d~~~~~-~~a~~~gv~~~-~l~ell~~aDvV~l~~P~t~~t~~li~ 171 (333)
.+|||||+|+||+++++.|...|+ +|++| |+.... +.+.+.|+... +..+++++||+|++|+| ....+.++
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~v~-~~~~~~vl- 78 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSSDVIILAVK-PQVVKDVL- 78 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHhcCCEEEEEEC-cHHHHHHH-
Confidence 379999999999999999998888 89999 876532 34455677654 67888999999999997 55667776
Q ss_pred HHHHhccCCCcEEEEccCCcccchHhHHhhhhc
Q psy6348 172 AEVLKKCKKGVRVVNVARGGIVDENALLDSLKC 204 (333)
Q Consensus 172 ~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~ 204 (333)
.+....++++.++|++.-| +..+.+.+.+..
T Consensus 79 ~~l~~~~~~~~~iIs~~~g--~~~~~l~~~~~~ 109 (266)
T PLN02688 79 TELRPLLSKDKLLVSVAAG--ITLADLQEWAGG 109 (266)
T ss_pred HHHHhhcCCCCEEEEecCC--CcHHHHHHHcCC
Confidence 3455667899999988666 466666665543
No 72
>PRK06545 prephenate dehydrogenase; Validated
Probab=98.85 E-value=5.8e-08 Score=95.06 Aligned_cols=139 Identities=23% Similarity=0.219 Sum_probs=90.0
Q ss_pred CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHH-HHhcCccc-----cChhhhccCCCEEEEecCCchhhHhhccH
Q psy6348 99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVED-AAKLNIAS-----LGLEDIWPLADYITVHTPLIPQTKNLINA 172 (333)
Q Consensus 99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~-a~~~gv~~-----~~l~ell~~aDvV~l~~P~t~~t~~li~~ 172 (333)
++|+|||+|.||+++|+.++..|++|.+|++...... ....+... .++++++++||+|++|+|. ..+..++ .
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~-~~~~~vl-~ 78 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVPV-DATAALL-A 78 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCH-HHHHHHH-H
Confidence 5799999999999999999999998888887664332 22233221 2567889999999999996 4566666 3
Q ss_pred HHHh-ccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccC---CCCCCC-CccchhhcCCCcEEEccCCCC
Q psy6348 173 EVLK-KCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVF---CEEPPK-SEQTFELIKHPKVIVTPHLGA 242 (333)
Q Consensus 173 ~~~~-~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~---~~EP~~-~~~~~~L~~~pnvi~TPHi~~ 242 (333)
+... .+++++++.+++.-+.-..+++.+.+.. ... .++.+ ..|-.. ......|+.....++||+-..
T Consensus 79 ~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~-~~~--~ig~HPMaG~e~sG~~aa~~~lf~g~~~il~~~~~~ 150 (359)
T PRK06545 79 ELADLELKPGVIVTDVGSVKGAILAEAEALLGD-LIR--FVGGHPMAGSHKSGVAAARADLFENAPWVLTPDDHT 150 (359)
T ss_pred HHhhcCCCCCcEEEeCccccHHHHHHHHHhcCC-CCe--EEeeCCcCcCchhhHHHhcHHHHCCCcEEEecCCCC
Confidence 3333 4889999999988765444454444222 122 22222 111000 000125777888999997653
No 73
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.84 E-value=1.2e-07 Score=89.81 Aligned_cols=136 Identities=20% Similarity=0.176 Sum_probs=90.3
Q ss_pred CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHHh-------------------------cCccc-cChhhhcc
Q psy6348 99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAAK-------------------------LNIAS-LGLEDIWP 151 (333)
Q Consensus 99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~-------------------------~gv~~-~~l~ell~ 151 (333)
++|+|||.|.||..+|..+...|++|+.||+.... +.+.+ ..+.. .++++.++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~~ 83 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAVK 83 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHhc
Confidence 58999999999999999999999999999987521 22111 01122 26778899
Q ss_pred CCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCccchhhcCC
Q psy6348 152 LADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKH 231 (333)
Q Consensus 152 ~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~L~~~ 231 (333)
.||+|+.++|...+.+.-+-++..+.++++++|+..+.+- ....+.+.++... +..++..|. |.+..
T Consensus 84 ~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~--~~~~~~~~~~~~~-r~vg~Hf~~----------p~~~~ 150 (287)
T PRK08293 84 DADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTL--LPSQFAEATGRPE-KFLALHFAN----------EIWKN 150 (287)
T ss_pred CCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccC--CHHHHHhhcCCcc-cEEEEcCCC----------CCCcC
Confidence 9999999999766666655566667789999885443332 4455666654322 234444322 33355
Q ss_pred CcEEEccCCCCCcHHHH
Q psy6348 232 PKVIVTPHLGASTKEAQ 248 (333)
Q Consensus 232 pnvi~TPHi~~~t~ea~ 248 (333)
|.+.+.|+-.. +.+..
T Consensus 151 ~lvevv~~~~t-~~~~~ 166 (287)
T PRK08293 151 NTAEIMGHPGT-DPEVF 166 (287)
T ss_pred CeEEEeCCCCC-CHHHH
Confidence 77788886553 33444
No 74
>PRK08507 prephenate dehydrogenase; Validated
Probab=98.81 E-value=8.5e-08 Score=90.30 Aligned_cols=98 Identities=19% Similarity=0.433 Sum_probs=70.6
Q ss_pred CEEEEEecChHHHHHHHHHhhCCC--EEEEEcCCCC-HHHHHhcCcc--ccChhhhccCCCEEEEecCCchhhHhhccHH
Q psy6348 99 KTLAVLGLGRIGREVALRMQAFGM--KVIGFDPMVS-VEDAAKLNIA--SLGLEDIWPLADYITVHTPLIPQTKNLINAE 173 (333)
Q Consensus 99 ktvGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~~-~~~a~~~gv~--~~~l~ell~~aDvV~l~~P~t~~t~~li~~~ 173 (333)
++|+|||+|.||+.+|..|+..|. +|++||+... .+.+.+.|+. ..+++++. +||+|++|+|.. .+..++ .+
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aD~Vilavp~~-~~~~~~-~~ 77 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEELK-KCDVIFLAIPVD-AIIEIL-PK 77 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHHh-cCCEEEEeCcHH-HHHHHH-HH
Confidence 379999999999999999998775 8999999752 3445566653 23667765 599999999953 444444 44
Q ss_pred HHhccCCCcEEEEccCCcccchHhHHhhhhc
Q psy6348 174 VLKKCKKGVRVVNVARGGIVDENALLDSLKC 204 (333)
Q Consensus 174 ~~~~mk~gailIN~aRg~~vd~~aL~~aL~~ 204 (333)
..+ +++++++++++.- ...+.+++..
T Consensus 78 l~~-l~~~~iv~d~gs~----k~~i~~~~~~ 103 (275)
T PRK08507 78 LLD-IKENTTIIDLGST----KAKIIESVPK 103 (275)
T ss_pred Hhc-cCCCCEEEECccc----hHHHHHHHHH
Confidence 556 8999999997553 3445555543
No 75
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.81 E-value=2.7e-08 Score=93.92 Aligned_cols=101 Identities=21% Similarity=0.257 Sum_probs=78.7
Q ss_pred CEEEEEecChHHHHHHHHHhhCCC----EEEEEcCCCCH-HHHH-hcCcccc-ChhhhccCCCEEEEecCCchhhHhhcc
Q psy6348 99 KTLAVLGLGRIGREVALRMQAFGM----KVIGFDPMVSV-EDAA-KLNIASL-GLEDIWPLADYITVHTPLIPQTKNLIN 171 (333)
Q Consensus 99 ktvGIIGlG~IG~~vA~~l~~~G~----~V~~~d~~~~~-~~a~-~~gv~~~-~l~ell~~aDvV~l~~P~t~~t~~li~ 171 (333)
++|||||+|+||+++++.|...|+ +|++|||.... +.+. ++|++.. +..+++++||+|++|+|. .....++
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavkP-~~~~~vl- 80 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSIKP-DLYSSVI- 80 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeCh-HHHHHHH-
Confidence 589999999999999999988774 79999986632 3333 3677554 677889999999999994 5666666
Q ss_pred HHHHhccCCCcEEEEccCCcccchHhHHhhhh
Q psy6348 172 AEVLKKCKKGVRVVNVARGGIVDENALLDSLK 203 (333)
Q Consensus 172 ~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~ 203 (333)
++....++++.++|++.-| ++.+.|.+.+.
T Consensus 81 ~~l~~~~~~~~lvISi~AG--i~i~~l~~~l~ 110 (272)
T PRK12491 81 NQIKDQIKNDVIVVTIAAG--KSIKSTENEFD 110 (272)
T ss_pred HHHHHhhcCCcEEEEeCCC--CcHHHHHHhcC
Confidence 4454567889999999888 67777777774
No 76
>PRK08818 prephenate dehydrogenase; Provisional
Probab=98.80 E-value=8e-08 Score=94.39 Aligned_cols=124 Identities=20% Similarity=0.253 Sum_probs=82.7
Q ss_pred CCCEEEEEec-ChHHHHHHHHHhh-CCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhccHH-
Q psy6348 97 YGKTLAVLGL-GRIGREVALRMQA-FGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAE- 173 (333)
Q Consensus 97 ~gktvGIIGl-G~IG~~vA~~l~~-~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~- 173 (333)
.-.||+|||+ |.||+.+|+.++. +|.+|++||+... ...++++.+++||+|++|+|. ..+..++.+-
T Consensus 3 ~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~---------~~~~~~~~v~~aDlVilavPv-~~~~~~l~~l~ 72 (370)
T PRK08818 3 AQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP---------GSLDPATLLQRADVLIFSAPI-RHTAALIEEYV 72 (370)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc---------ccCCHHHHhcCCCEEEEeCCH-HHHHHHHHHHh
Confidence 4579999999 9999999999986 5999999998411 123577889999999999994 4555555321
Q ss_pred -HHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCccchhhcCCCcEEEccC
Q psy6348 174 -VLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPH 239 (333)
Q Consensus 174 -~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~L~~~pnvi~TPH 239 (333)
....+++++++.+++.-+---.+++ ..... ++...=|-..+....+++..++++||.
T Consensus 73 ~~~~~l~~~~iVtDVgSvK~~i~~~~----~~~~~-----~fVG~HPMaG~E~s~lf~g~~~iltp~ 130 (370)
T PRK08818 73 ALAGGRAAGQLWLDVTSIKQAPVAAM----LASQA-----EVVGLHPMTAPPKSPTLKGRVMVVCEA 130 (370)
T ss_pred hhhcCCCCCeEEEECCCCcHHHHHHH----HhcCC-----CEEeeCCCCCCCCCcccCCCeEEEeCC
Confidence 1134899999999988653222222 21111 122223322111135777888999996
No 77
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=98.77 E-value=1.4e-07 Score=93.00 Aligned_cols=123 Identities=17% Similarity=0.102 Sum_probs=86.0
Q ss_pred CchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCCCEEEEEe-cChHHHHHHHHHhhCCCEEEEEcCCCCH
Q psy6348 55 NFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLG-LGRIGREVALRMQAFGMKVIGFDPMVSV 133 (333)
Q Consensus 55 n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~~~ 133 (333)
.....++..+-.++..+|...+. . | +.-..-..++|+||| +|.||+.+|+.|+..|+.|.+||+...
T Consensus 66 l~~~~~~~i~~~i~~~s~~~q~~------~-~----~~~~~~~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~- 133 (374)
T PRK11199 66 VPPDLIEDVLRRVMRESYSSEND------K-G----FKTLNPDLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDW- 133 (374)
T ss_pred CCHHHHHHHHHHHHHHHHHHhHH------h-c----ccccCcccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcc-
Confidence 34455677777777777653211 1 1 111122458999999 999999999999999999999998531
Q ss_pred HHHHhcCccccChhhhccCCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhh
Q psy6348 134 EDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSL 202 (333)
Q Consensus 134 ~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL 202 (333)
.+.++++++||+|++|+|.. .+..++ ++... +++|+++++++.-+..-..++.+.+
T Consensus 134 ----------~~~~~~~~~aDlVilavP~~-~~~~~~-~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~~~ 189 (374)
T PRK11199 134 ----------DRAEDILADAGMVIVSVPIH-LTEEVI-ARLPP-LPEDCILVDLTSVKNAPLQAMLAAH 189 (374)
T ss_pred ----------hhHHHHHhcCCEEEEeCcHH-HHHHHH-HHHhC-CCCCcEEEECCCccHHHHHHHHHhC
Confidence 24567888999999999965 445555 33444 8999999999886544444555443
No 78
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=98.77 E-value=1.1e-07 Score=94.71 Aligned_cols=137 Identities=20% Similarity=0.243 Sum_probs=88.4
Q ss_pred CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHh--------------------cC-ccc-cChhhhccCCCEE
Q psy6348 99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAK--------------------LN-IAS-LGLEDIWPLADYI 156 (333)
Q Consensus 99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~--------------------~g-v~~-~~l~ell~~aDvV 156 (333)
++|||||+|.||..+|..|...|++|++||+....-.... .| +.. .++++++++||+|
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~advv 80 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADVI 80 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCEE
Confidence 3799999999999999999999999999998653211111 13 333 2677889999999
Q ss_pred EEecCCchh------hHhhc--cHHHHhccCCCcEEEEccCCcccchHhHHhh-hhc--CCceEEEecc---CCCCCCCC
Q psy6348 157 TVHTPLIPQ------TKNLI--NAEVLKKCKKGVRVVNVARGGIVDENALLDS-LKC--GHCGGAALDV---FCEEPPKS 222 (333)
Q Consensus 157 ~l~~P~t~~------t~~li--~~~~~~~mk~gailIN~aRg~~vd~~aL~~a-L~~--g~i~gaalDV---~~~EP~~~ 222 (333)
++|+|.... ...+. -....+.+++|.++|+++.-.+-..+.+... +++ |.- .+.|+ +.+|....
T Consensus 81 ii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~~~g~~--~~~d~~v~~~Pe~~~~ 158 (411)
T TIGR03026 81 IICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILERASGLK--LGEDFYLAYNPEFLRE 158 (411)
T ss_pred EEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHhhcCCC--CCCCceEEECCCcCCC
Confidence 999995432 11222 2445677899999999997766666777644 343 211 12332 23443221
Q ss_pred c-cchhhcCCCcEEEc
Q psy6348 223 E-QTFELIKHPKVIVT 237 (333)
Q Consensus 223 ~-~~~~L~~~pnvi~T 237 (333)
. ..+.++..+.+++.
T Consensus 159 G~~~~~~~~~~~iv~G 174 (411)
T TIGR03026 159 GNAVHDLLNPDRIVGG 174 (411)
T ss_pred CChhhhhcCCCEEEEe
Confidence 1 12345666677755
No 79
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.75 E-value=2e-07 Score=88.48 Aligned_cols=113 Identities=19% Similarity=0.128 Sum_probs=79.1
Q ss_pred CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHHh-----------cC-------------cccc-ChhhhccC
Q psy6348 99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAAK-----------LN-------------IASL-GLEDIWPL 152 (333)
Q Consensus 99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~-----------~g-------------v~~~-~l~ell~~ 152 (333)
++|+|||+|.||..+|..+...|++|++||+.... +.+.+ .| ++.. +++ .+++
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 83 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLE-DLAD 83 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH-HhcC
Confidence 68999999999999999999999999999987522 22110 12 1222 454 5789
Q ss_pred CCEEEEecCCchhhHhhccHHHHhccCCCcEEE-EccCCcccchHhHHhhhhcCCceEEEeccCC
Q psy6348 153 ADYITVHTPLIPQTKNLINAEVLKKCKKGVRVV-NVARGGIVDENALLDSLKCGHCGGAALDVFC 216 (333)
Q Consensus 153 aDvV~l~~P~t~~t~~li~~~~~~~mk~gailI-N~aRg~~vd~~aL~~aL~~g~i~gaalDV~~ 216 (333)
||+|+.++|...+.+..+-++..+.++++++|+ |++.-.+ .++.+.+... -+..++..+.
T Consensus 84 aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~---s~la~~~~~~-~r~~g~h~~~ 144 (292)
T PRK07530 84 CDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISI---TRLASATDRP-ERFIGIHFMN 144 (292)
T ss_pred CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH---HHHHhhcCCc-ccEEEeeccC
Confidence 999999999877766655567777889999998 5555443 3677776421 2224555555
No 80
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.71 E-value=4.4e-08 Score=93.36 Aligned_cols=80 Identities=21% Similarity=0.238 Sum_probs=68.1
Q ss_pred ccccCCCEEEEEecC-hHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhcc
Q psy6348 93 GTELYGKTLAVLGLG-RIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLIN 171 (333)
Q Consensus 93 g~~l~gktvGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~ 171 (333)
+.++.||+++|||.| .||+.+|.+|...|++|.+|++... ++.++.++||+|+++++.. +++.
T Consensus 154 ~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~------------~l~e~~~~ADIVIsavg~~----~~v~ 217 (301)
T PRK14194 154 CGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRST------------DAKALCRQADIVVAAVGRP----RLID 217 (301)
T ss_pred CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCC------------CHHHHHhcCCEEEEecCCh----hccc
Confidence 568999999999996 9999999999999999999987532 6788899999999999854 3454
Q ss_pred HHHHhccCCCcEEEEccCCc
Q psy6348 172 AEVLKKCKKGVRVVNVARGG 191 (333)
Q Consensus 172 ~~~~~~mk~gailIN~aRg~ 191 (333)
... +|+|+++||++-..
T Consensus 218 ~~~---ik~GaiVIDvgin~ 234 (301)
T PRK14194 218 ADW---LKPGAVVIDVGINR 234 (301)
T ss_pred Hhh---ccCCcEEEEecccc
Confidence 443 79999999998654
No 81
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=98.71 E-value=1.1e-07 Score=81.24 Aligned_cols=109 Identities=26% Similarity=0.312 Sum_probs=79.0
Q ss_pred cccCCCEEEEEecChHHHHHHHHHhhCC-CEEEEEcCCCCH--HHHHhcCc-----cccChhhhccCCCEEEEecCCchh
Q psy6348 94 TELYGKTLAVLGLGRIGREVALRMQAFG-MKVIGFDPMVSV--EDAAKLNI-----ASLGLEDIWPLADYITVHTPLIPQ 165 (333)
Q Consensus 94 ~~l~gktvGIIGlG~IG~~vA~~l~~~G-~~V~~~d~~~~~--~~a~~~gv-----~~~~l~ell~~aDvV~l~~P~t~~ 165 (333)
.++.+++++|+|+|.||+.+++.+...| .+|.++|++... +.+++.+. ...+++++++++|+|++++|....
T Consensus 15 ~~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~~~~~~ 94 (155)
T cd01065 15 IELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTTPVGMK 94 (155)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCcCCCCC
Confidence 3467899999999999999999999886 789999987532 22333343 234677888999999999996553
Q ss_pred -hHh-hccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCc
Q psy6348 166 -TKN-LINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHC 207 (333)
Q Consensus 166 -t~~-li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i 207 (333)
... .+.. ..++++.+++|++...... .+.+++++..+
T Consensus 95 ~~~~~~~~~---~~~~~~~~v~D~~~~~~~~--~l~~~~~~~g~ 133 (155)
T cd01065 95 PGDELPLPP---SLLKPGGVVYDVVYNPLET--PLLKEARALGA 133 (155)
T ss_pred CCCCCCCCH---HHcCCCCEEEEcCcCCCCC--HHHHHHHHCCC
Confidence 122 2332 2368999999998765433 77777777644
No 82
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.71 E-value=3.3e-07 Score=86.59 Aligned_cols=114 Identities=18% Similarity=0.134 Sum_probs=80.3
Q ss_pred CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHH------------HHHhcC-------------cccc-ChhhhccC
Q psy6348 99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVE------------DAAKLN-------------IASL-GLEDIWPL 152 (333)
Q Consensus 99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~------------~a~~~g-------------v~~~-~l~ell~~ 152 (333)
++|+|||+|.||..+|..+...|++|++||+..... ...+.| +... +++ .+++
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~-~~~~ 82 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLD-DLKD 82 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhcc
Confidence 589999999999999999999999999999865321 112223 1212 444 4789
Q ss_pred CCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCC
Q psy6348 153 ADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFC 216 (333)
Q Consensus 153 aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~ 216 (333)
||+|++++|...+.+.-+-++..+.++++++|+..+.| +....|.+.+... -+..++..+.
T Consensus 83 aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~--~~~~~la~~~~~~-~r~ig~h~~~ 143 (282)
T PRK05808 83 ADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSS--LSITELAAATKRP-DKVIGMHFFN 143 (282)
T ss_pred CCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHHhhCCC-cceEEeeccC
Confidence 99999999977777765556677788999988655555 5555888877432 2234454444
No 83
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.71 E-value=9.3e-08 Score=90.29 Aligned_cols=104 Identities=9% Similarity=0.127 Sum_probs=76.3
Q ss_pred CCCEEEEEecChHHHHHHHHHhhCC----CEEEEEcCCCCH--HH-HHhcCcccc-ChhhhccCCCEEEEecCCchhhHh
Q psy6348 97 YGKTLAVLGLGRIGREVALRMQAFG----MKVIGFDPMVSV--ED-AAKLNIASL-GLEDIWPLADYITVHTPLIPQTKN 168 (333)
Q Consensus 97 ~gktvGIIGlG~IG~~vA~~l~~~G----~~V~~~d~~~~~--~~-a~~~gv~~~-~l~ell~~aDvV~l~~P~t~~t~~ 168 (333)
.+++|||||+|+||+++|+.|...| .+|++|||.... +. ....|+... +..+++++||+|++++|. .....
T Consensus 2 ~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVilav~p-~~~~~ 80 (279)
T PRK07679 2 SIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAMKP-KDVAE 80 (279)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEEeCH-HHHHH
Confidence 3468999999999999999999887 789999986522 22 234576544 678889999999999994 44445
Q ss_pred hccHHHHhccCCCcEEEEccCCcccchHhHHhhhhc
Q psy6348 169 LINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKC 204 (333)
Q Consensus 169 li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~ 204 (333)
++ .+....++++.++|++.-| +..+.+.+.+..
T Consensus 81 vl-~~l~~~~~~~~liIs~~aG--i~~~~l~~~~~~ 113 (279)
T PRK07679 81 AL-IPFKEYIHNNQLIISLLAG--VSTHSIRNLLQK 113 (279)
T ss_pred HH-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcCC
Confidence 44 4555667889999998655 355566665543
No 84
>KOG1370|consensus
Probab=98.69 E-value=4.4e-08 Score=92.33 Aligned_cols=93 Identities=25% Similarity=0.297 Sum_probs=80.0
Q ss_pred ccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhccHH
Q psy6348 95 ELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV-SVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAE 173 (333)
Q Consensus 95 ~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~ 173 (333)
-+.||.+.|.|||.+|+..|+.|++||..|++..-.+ ..-.+...|++.++++|++++.|+++.++ ..+.+|..+
T Consensus 211 M~aGKv~Vv~GYGdVGKgCaqaLkg~g~~VivTEiDPI~ALQAaMeG~~V~tm~ea~~e~difVTtT----Gc~dii~~~ 286 (434)
T KOG1370|consen 211 MIAGKVAVVCGYGDVGKGCAQALKGFGARVIVTEIDPICALQAAMEGYEVTTLEEAIREVDIFVTTT----GCKDIITGE 286 (434)
T ss_pred eecccEEEEeccCccchhHHHHHhhcCcEEEEeccCchHHHHHHhhccEeeeHHHhhhcCCEEEEcc----CCcchhhHH
Confidence 4689999999999999999999999999999974443 33345567899999999999999999865 568899999
Q ss_pred HHhccCCCcEEEEccCCc
Q psy6348 174 VLKKCKKGVRVVNVARGG 191 (333)
Q Consensus 174 ~~~~mk~gailIN~aRg~ 191 (333)
.|.+||+++++.|++.-.
T Consensus 287 H~~~mk~d~IvCN~Ghfd 304 (434)
T KOG1370|consen 287 HFDQMKNDAIVCNIGHFD 304 (434)
T ss_pred HHHhCcCCcEEecccccc
Confidence 999999999999996644
No 85
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=98.69 E-value=3.4e-07 Score=97.42 Aligned_cols=137 Identities=22% Similarity=0.261 Sum_probs=94.4
Q ss_pred CEEEEEecChHHHHHHHHHhhCC--CEEEEEcCCCC-HHHHHhcCcc---ccChhhhccCCCEEEEecCCchhhHhhccH
Q psy6348 99 KTLAVLGLGRIGREVALRMQAFG--MKVIGFDPMVS-VEDAAKLNIA---SLGLEDIWPLADYITVHTPLIPQTKNLINA 172 (333)
Q Consensus 99 ktvGIIGlG~IG~~vA~~l~~~G--~~V~~~d~~~~-~~~a~~~gv~---~~~l~ell~~aDvV~l~~P~t~~t~~li~~ 172 (333)
++|+|||+|.||+.+|+.++..| .+|++||+... .+.+.+.|+. ..++++++.++|+|++++|.. ....++ +
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilavp~~-~~~~vl-~ 81 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAVPVL-AMEKVL-A 81 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECCCHH-HHHHHH-H
Confidence 68999999999999999999988 58999999763 3445566763 236778899999999999953 444444 3
Q ss_pred HHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCC-------CccchhhcCCCcEEEccCCCC
Q psy6348 173 EVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPK-------SEQTFELIKHPKVIVTPHLGA 242 (333)
Q Consensus 173 ~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~-------~~~~~~L~~~pnvi~TPHi~~ 242 (333)
+..+.++++.++++++.......+.+.+.+....++ +..+=|-. ......|+...+++++|+-..
T Consensus 82 ~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~r-----~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~~~~~ 153 (735)
T PRK14806 82 DLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPAG-----FVPGHPIAGSEKSGVHAANADLFRNHKVILTPLAET 153 (735)
T ss_pred HHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCCe-----EEecCCcCcCCcchhhhhhhHHhCCCeEEEECCCCC
Confidence 444567889999999886544455566555432222 22222211 001135788889999997654
No 86
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.67 E-value=1.7e-07 Score=85.94 Aligned_cols=115 Identities=20% Similarity=0.251 Sum_probs=96.1
Q ss_pred CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHhcCcccc-Chhhh---ccCCCEEEEecCCchhhHhhccHH
Q psy6348 99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV-SVEDAAKLNIASL-GLEDI---WPLADYITVHTPLIPQTKNLINAE 173 (333)
Q Consensus 99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~gv~~~-~l~el---l~~aDvV~l~~P~t~~t~~li~~~ 173 (333)
+++|.||||+||..+.++|..-|++|++||..+ ..+.+...|.+.+ +++++ +..--+|-+++|..+.|..++ ++
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi-~~ 79 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVI-DD 79 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHH-HH
Confidence 479999999999999999999999999999987 4456667776544 66766 456789999999887888877 55
Q ss_pred HHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCC
Q psy6348 174 VLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFC 216 (333)
Q Consensus 174 ~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~ 216 (333)
.-.+|.+|-++|+-+....-|....++.|++..|. .+||=.
T Consensus 80 la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~--flD~GT 120 (300)
T COG1023 80 LAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIH--FLDVGT 120 (300)
T ss_pred HHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCe--EEeccC
Confidence 66789999999999999998988899999998884 677743
No 87
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=98.67 E-value=2e-07 Score=92.35 Aligned_cols=128 Identities=15% Similarity=0.202 Sum_probs=86.9
Q ss_pred EEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHHh----------------cCccc-c--ChhhhccCCCEEEEe
Q psy6348 100 TLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAAK----------------LNIAS-L--GLEDIWPLADYITVH 159 (333)
Q Consensus 100 tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~----------------~gv~~-~--~l~ell~~aDvV~l~ 159 (333)
+|+|||+|.||..+|..+. .|++|++||+.... +...+ .+... . +..++.++||+|++|
T Consensus 2 kI~VIGlGyvGl~~A~~lA-~G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vii~ 80 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIA-QNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVIIA 80 (388)
T ss_pred EEEEECCCHHHHHHHHHHH-hCCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEEEEe
Confidence 7999999999999997666 59999999986533 22211 11222 1 356778999999999
Q ss_pred cCCch----------hhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCC-ccchhh
Q psy6348 160 TPLIP----------QTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKS-EQTFEL 228 (333)
Q Consensus 160 ~P~t~----------~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~-~~~~~L 228 (333)
+|... ..+..+ +...+ +++|.++|+.|.-.+=..+.+.+.+.+..+. |.+|.... ...+.+
T Consensus 81 Vpt~~~~k~~~~dl~~v~~v~-~~i~~-~~~g~lVV~~STv~pgtt~~l~~~~~~~~v~------~~PE~l~~G~a~~d~ 152 (388)
T PRK15057 81 TPTDYDPKTNYFNTSSVESVI-KDVVE-INPYAVMVIKSTVPVGFTAAMHKKYRTENII------FSPEFLREGKALYDN 152 (388)
T ss_pred CCCCCccCCCCcChHHHHHHH-HHHHh-cCCCCEEEEeeecCCchHHHHHHHhhcCcEE------ECcccccCCcccccc
Confidence 99541 222222 33444 7999999999999998899998887654332 46665332 123456
Q ss_pred cCCCcEEE
Q psy6348 229 IKHPKVIV 236 (333)
Q Consensus 229 ~~~pnvi~ 236 (333)
+..|+|++
T Consensus 153 ~~p~rvv~ 160 (388)
T PRK15057 153 LHPSRIVI 160 (388)
T ss_pred cCCCEEEE
Confidence 66667763
No 88
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.67 E-value=5.4e-07 Score=85.66 Aligned_cols=115 Identities=17% Similarity=0.100 Sum_probs=82.4
Q ss_pred CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HH-----------HHhcCc-------------ccc-ChhhhccC
Q psy6348 99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-ED-----------AAKLNI-------------ASL-GLEDIWPL 152 (333)
Q Consensus 99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~-----------a~~~gv-------------~~~-~l~ell~~ 152 (333)
++|||||.|.||..+|..+...|++|+.||+.+.. +. ..+.|. +.. ++ +.+++
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~~ 84 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDFAD 84 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHhCC
Confidence 48999999999999999999999999999997632 22 122221 122 55 55799
Q ss_pred CCEEEEecCCchhhHhhccHHHHhcc-CCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCC
Q psy6348 153 ADYITVHTPLIPQTKNLINAEVLKKC-KKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCE 217 (333)
Q Consensus 153 aDvV~l~~P~t~~t~~li~~~~~~~m-k~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~ 217 (333)
||+|+-++|.+.+.+..+-.+.-+.+ +++++|++.+.+-.+.+-+ .+++.. =+-.++..|.+
T Consensus 85 ~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la--~~~~~~-~r~~g~hf~~P 147 (286)
T PRK07819 85 RQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLA--AATKRP-GRVLGLHFFNP 147 (286)
T ss_pred CCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHH--hhcCCC-ccEEEEecCCC
Confidence 99999999999998888766555555 8999999887775554444 444321 22356777664
No 89
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.67 E-value=1.4e-07 Score=91.03 Aligned_cols=101 Identities=23% Similarity=0.234 Sum_probs=75.0
Q ss_pred CCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHHhc--------C------cccc-ChhhhccCCCEEEEecC
Q psy6348 98 GKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAAKL--------N------IASL-GLEDIWPLADYITVHTP 161 (333)
Q Consensus 98 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~--------g------v~~~-~l~ell~~aDvV~l~~P 161 (333)
.++|+|||+|.||..+|.+|...|++|.+|++.... +..... | +... +++++++.+|+|++++|
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~v~ 83 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVAVP 83 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEECc
Confidence 358999999999999999999999999999996532 223222 3 2222 67788899999999999
Q ss_pred CchhhHhhccHHHHhccCCCcEEEEccCC-cccc--hHhHHhhhhc
Q psy6348 162 LIPQTKNLINAEVLKKCKKGVRVVNVARG-GIVD--ENALLDSLKC 204 (333)
Q Consensus 162 ~t~~t~~li~~~~~~~mk~gailIN~aRg-~~vd--~~aL~~aL~~ 204 (333)
.. .+ ++.++.++++.++|+++.| ..-+ .+.+.+.+.+
T Consensus 84 ~~-~~-----~~v~~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~ 123 (328)
T PRK14618 84 SK-AL-----RETLAGLPRALGYVSCAKGLAPDGGRLSELARVLEF 123 (328)
T ss_pred hH-HH-----HHHHHhcCcCCEEEEEeeccccCCCccchHHHHHHH
Confidence 54 22 5555778999999999997 4332 4456666644
No 90
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=98.67 E-value=4e-08 Score=82.53 Aligned_cols=107 Identities=23% Similarity=0.311 Sum_probs=62.9
Q ss_pred CCCEEEEEecChHHHHHHHHHhhCCCEEEEEc-CCC-CHHHHHh-cC-ccccChhhhccCCCEEEEecCCchhhHhhccH
Q psy6348 97 YGKTLAVLGLGRIGREVALRMQAFGMKVIGFD-PMV-SVEDAAK-LN-IASLGLEDIWPLADYITVHTPLIPQTKNLINA 172 (333)
Q Consensus 97 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d-~~~-~~~~a~~-~g-v~~~~l~ell~~aDvV~l~~P~t~~t~~li~~ 172 (333)
...+|||||.|++|..+++.|...|++|.++- ++. +.+.+.. .+ ....+++|+++++|++++++|+. ....+ .+
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpDd-aI~~v-a~ 86 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPDD-AIAEV-AE 86 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-CC-HHHHH-HH
T ss_pred CccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEechH-HHHHH-HH
Confidence 34699999999999999999999999998864 433 2233322 22 33458899999999999999965 33333 34
Q ss_pred HHHhc--cCCCcEEEEccCCcccchHhHHhhhhcCCc
Q psy6348 173 EVLKK--CKKGVRVVNVARGGIVDENALLDSLKCGHC 207 (333)
Q Consensus 173 ~~~~~--mk~gailIN~aRg~~vd~~aL~~aL~~g~i 207 (333)
++-.. .++|.+++.||= -..-+-|..+-+.|-+
T Consensus 87 ~La~~~~~~~g~iVvHtSG--a~~~~vL~p~~~~Ga~ 121 (127)
T PF10727_consen 87 QLAQYGAWRPGQIVVHTSG--ALGSDVLAPARERGAI 121 (127)
T ss_dssp HHHCC--S-TT-EEEES-S--S--GGGGHHHHHTT-E
T ss_pred HHHHhccCCCCcEEEECCC--CChHHhhhhHHHCCCe
Confidence 44443 689999999942 2344444444445544
No 91
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.66 E-value=7.5e-07 Score=84.57 Aligned_cols=116 Identities=17% Similarity=0.184 Sum_probs=81.3
Q ss_pred CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHHh--------------cCc-------------ccc-Chhhh
Q psy6348 99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAAK--------------LNI-------------ASL-GLEDI 149 (333)
Q Consensus 99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~--------------~gv-------------~~~-~l~el 149 (333)
++|+|||.|.||..+|..+...|++|++||+.... +.+.+ .|. ... ++ +.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 82 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-ES 82 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-HH
Confidence 68999999999999999999999999999987522 21110 011 111 33 56
Q ss_pred ccCCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCC
Q psy6348 150 WPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEE 218 (333)
Q Consensus 150 l~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~E 218 (333)
+++||+|+.++|...+.+..+-++.-+.++++++|++.+.| +....+.+.+... -+..++..|.+-
T Consensus 83 ~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg--~~~~~la~~~~~~-~r~ig~hf~~P~ 148 (291)
T PRK06035 83 LSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSG--IMIAEIATALERK-DRFIGMHWFNPA 148 (291)
T ss_pred hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCC--CCHHHHHhhcCCc-ccEEEEecCCCc
Confidence 78999999999977655555545565678999999877776 4566777777532 233566555543
No 92
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=98.66 E-value=4e-07 Score=92.87 Aligned_cols=104 Identities=22% Similarity=0.252 Sum_probs=75.9
Q ss_pred CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHH-HHH-------------------hcC-cccc-ChhhhccCCCEE
Q psy6348 99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVE-DAA-------------------KLN-IASL-GLEDIWPLADYI 156 (333)
Q Consensus 99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~-~a~-------------------~~g-v~~~-~l~ell~~aDvV 156 (333)
++|||||+|.||.++|..+...|++|++||+..... ... ..| +... ++++++++||+|
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD~V 84 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGADWI 84 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCCEE
Confidence 589999999999999999999999999999976321 111 012 3333 688899999999
Q ss_pred EEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhc
Q psy6348 157 TVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKC 204 (333)
Q Consensus 157 ~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~ 204 (333)
+.++|...+.+..+-.+.-+.++++++| .++..++- ...+.+.+..
T Consensus 85 ieavpe~~~vk~~l~~~l~~~~~~~~iI-~SsTsgi~-~s~l~~~~~~ 130 (495)
T PRK07531 85 QESVPERLDLKRRVLAEIDAAARPDALI-GSSTSGFL-PSDLQEGMTH 130 (495)
T ss_pred EEcCcCCHHHHHHHHHHHHhhCCCCcEE-EEcCCCCC-HHHHHhhcCC
Confidence 9999988776775545555667888654 55555543 5577777654
No 93
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=98.66 E-value=7.1e-08 Score=94.92 Aligned_cols=148 Identities=16% Similarity=0.192 Sum_probs=97.5
Q ss_pred cCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHH-HhcCcc----c---cChhhhccCCCEEEEecCCc-hh
Q psy6348 96 LYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDA-AKLNIA----S---LGLEDIWPLADYITVHTPLI-PQ 165 (333)
Q Consensus 96 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a-~~~gv~----~---~~l~ell~~aDvV~l~~P~t-~~ 165 (333)
+.++++.|+|+|.+|+.+++.++++|++|.++|++... +.+ ...+.. . .++.+.++++|+|+.+++.+ ..
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~~ 244 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGAK 244 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCCC
Confidence 57788999999999999999999999999999986532 222 223321 1 24677889999999998642 23
Q ss_pred hHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCccchhhcCC--CcEEEccCCCC-
Q psy6348 166 TKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKH--PKVIVTPHLGA- 242 (333)
Q Consensus 166 t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~L~~~--pnvi~TPHi~~- 242 (333)
+..+++++.++.||+++++||++-.. -|.+- ...|...+ .|.+.. -.+++-||+.+
T Consensus 245 ~p~lit~~~l~~mk~g~vIvDva~d~------------GG~~e-------~~~~t~~d--~p~~~~~Gv~~~~v~nlP~~ 303 (370)
T TIGR00518 245 APKLVSNSLVAQMKPGAVIVDVAIDQ------------GGCVE-------TSRPTTHD--QPTYAVHDVVHYCVANMPGA 303 (370)
T ss_pred CCcCcCHHHHhcCCCCCEEEEEecCC------------CCCcc-------CCcCCCCC--CCEEEECCeEEEEeCCcccc
Confidence 45688999999999999999986210 11111 01122111 123222 34566778865
Q ss_pred CcHHHHHHHHHHHHHHHHHhHc
Q psy6348 243 STKEAQIRVAVEIAEQFIALAN 264 (333)
Q Consensus 243 ~t~ea~~~~~~~~~~~i~~~~~ 264 (333)
...++....+..+..-+..+..
T Consensus 304 ~p~~aS~~~~~~l~~~l~~~~~ 325 (370)
T TIGR00518 304 VPKTSTYALTNATMPYVLELAN 325 (370)
T ss_pred cHHHHHHHHHHHHHHHHHHHHh
Confidence 4555666666666666666544
No 94
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=98.64 E-value=1.2e-07 Score=89.58 Aligned_cols=107 Identities=17% Similarity=0.170 Sum_probs=78.5
Q ss_pred CCCEEEEEecChHHHHHHHHHhh--CCCEEE-EEcCCCCH--HHHHhcCc-c-ccChhhhccCCCEEEEecCCchhhHhh
Q psy6348 97 YGKTLAVLGLGRIGREVALRMQA--FGMKVI-GFDPMVSV--EDAAKLNI-A-SLGLEDIWPLADYITVHTPLIPQTKNL 169 (333)
Q Consensus 97 ~gktvGIIGlG~IG~~vA~~l~~--~G~~V~-~~d~~~~~--~~a~~~gv-~-~~~l~ell~~aDvV~l~~P~t~~t~~l 169 (333)
...+|||||+|+||+.+++.+.. .++++. +||+.... +.+.++|. . +.++++++.++|+|++|+|.... .-
T Consensus 5 ~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~tp~~~h--~e 82 (271)
T PRK13302 5 PELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPASVL--RA 82 (271)
T ss_pred CeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECCCcHHH--HH
Confidence 34799999999999999999986 488876 67886532 23344553 2 34899999999999999995332 22
Q ss_pred ccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCce
Q psy6348 170 INAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCG 208 (333)
Q Consensus 170 i~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~ 208 (333)
+. .+.++.|.-++..+.|.+.+.++|.++.+++...
T Consensus 83 ~~---~~aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~ 118 (271)
T PRK13302 83 IV---EPVLAAGKKAIVLSVGALLRNEDLIDLARQNGGQ 118 (271)
T ss_pred HH---HHHHHcCCcEEEecchhHHhHHHHHHHHHHcCCE
Confidence 22 3335677777778899888889999988886543
No 95
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.64 E-value=3.8e-07 Score=87.40 Aligned_cols=104 Identities=22% Similarity=0.236 Sum_probs=71.7
Q ss_pred CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHH-----------HhcCc-------------cc-cChhhhccC
Q psy6348 99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDA-----------AKLNI-------------AS-LGLEDIWPL 152 (333)
Q Consensus 99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a-----------~~~gv-------------~~-~~l~ell~~ 152 (333)
++|+|||+|.||.++|..+...|++|++||+.... +.+ .+.|. .. .++.+++++
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~~ 82 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVAD 82 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhCC
Confidence 47999999999999999999999999999997522 211 12332 22 378888999
Q ss_pred CCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhc
Q psy6348 153 ADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKC 204 (333)
Q Consensus 153 aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~ 204 (333)
||+|+.++|...+.+..+-.+.-+..+++.++. .+.. ......+.+.+..
T Consensus 83 ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~-ssts-~~~~~~la~~~~~ 132 (308)
T PRK06129 83 ADYVQESAPENLELKRALFAELDALAPPHAILA-SSTS-ALLASAFTEHLAG 132 (308)
T ss_pred CCEEEECCcCCHHHHHHHHHHHHHhCCCcceEE-EeCC-CCCHHHHHHhcCC
Confidence 999999999765555544344333445555554 3333 3446667777754
No 96
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=98.64 E-value=1.9e-07 Score=89.32 Aligned_cols=88 Identities=11% Similarity=0.125 Sum_probs=72.4
Q ss_pred HHHHHHHHhhCCCEEEEEcCCCCH------HHHHhcCcccc-ChhhhccCCCEEEEecCCchhhHhhccHHHHhccCCCc
Q psy6348 110 GREVALRMQAFGMKVIGFDPMVSV------EDAAKLNIASL-GLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGV 182 (333)
Q Consensus 110 G~~vA~~l~~~G~~V~~~d~~~~~------~~a~~~gv~~~-~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~mk~ga 182 (333)
|+.||++|...|++|++||++.+. +...+.|+..+ +..+++++||+|++|+|..+.++.++ ...++.+++|+
T Consensus 32 GspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl-~GLaa~L~~Ga 110 (341)
T TIGR01724 32 GSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAKHGEIHVLFTPFGKGTFSIA-RTIIEHVPENA 110 (341)
T ss_pred HHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCeecCCHHHHHhCCCEEEEecCCHHHHHHHH-HHHHhcCCCCC
Confidence 889999999999999999986531 23566787766 68899999999999999888888887 56889999999
Q ss_pred EEEEccCCcccchHhH
Q psy6348 183 RVVNVARGGIVDENAL 198 (333)
Q Consensus 183 ilIN~aRg~~vd~~aL 198 (333)
++||+++.++...-..
T Consensus 111 IVID~STIsP~t~~~~ 126 (341)
T TIGR01724 111 VICNTCTVSPVVLYYS 126 (341)
T ss_pred EEEECCCCCHHHHHHH
Confidence 9999988765444443
No 97
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=98.63 E-value=1.9e-07 Score=95.51 Aligned_cols=115 Identities=22% Similarity=0.259 Sum_probs=85.9
Q ss_pred CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHH-----------HhcC-------------cccc-ChhhhccC
Q psy6348 99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDA-----------AKLN-------------IASL-GLEDIWPL 152 (333)
Q Consensus 99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a-----------~~~g-------------v~~~-~l~ell~~ 152 (333)
++|||||+|.||+.+|..+...|++|+.||+.... +.+ .+.| +... ++++ +++
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-~~~ 86 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD-LAD 86 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hCC
Confidence 68999999999999999999999999999997632 221 2234 2222 5655 569
Q ss_pred CCEEEEecCCchhhHhhccHHHHhccCCCcEE-EEccCCcccchHhHHhhhhc-CCceEEEeccCCCCC
Q psy6348 153 ADYITVHTPLIPQTKNLINAEVLKKCKKGVRV-VNVARGGIVDENALLDSLKC-GHCGGAALDVFCEEP 219 (333)
Q Consensus 153 aDvV~l~~P~t~~t~~li~~~~~~~mk~gail-IN~aRg~~vd~~aL~~aL~~-g~i~gaalDV~~~EP 219 (333)
||+|+-++|...+.+..+-.+.-..++++++| .|+|.-.+- ++..+++. .++ .++..|.+-|
T Consensus 87 aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~---~la~~~~~p~r~--~G~hff~Pa~ 150 (507)
T PRK08268 87 CDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSIT---AIAAALKHPERV--AGLHFFNPVP 150 (507)
T ss_pred CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH---HHHhhcCCcccE--EEEeecCCcc
Confidence 99999999999998888766665667899999 589887763 56666653 233 5677777544
No 98
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=98.63 E-value=1.3e-07 Score=90.33 Aligned_cols=91 Identities=20% Similarity=0.238 Sum_probs=69.8
Q ss_pred CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHHhc--------------Ccccc-ChhhhccCCCEEEEecCC
Q psy6348 99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAAKL--------------NIASL-GLEDIWPLADYITVHTPL 162 (333)
Q Consensus 99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~--------------gv~~~-~l~ell~~aDvV~l~~P~ 162 (333)
++|+|||+|.||..+|.+|...|++|.+||+.... +...+. ++... ++++.++++|+|++++|.
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~~ 81 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVPS 81 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeCCH
Confidence 47999999999999999999999999999996522 323332 23222 677788999999999995
Q ss_pred chhhHhhccHHHHhccCCCcEEEEccCCc
Q psy6348 163 IPQTKNLINAEVLKKCKKGVRVVNVARGG 191 (333)
Q Consensus 163 t~~t~~li~~~~~~~mk~gailIN~aRg~ 191 (333)
..+..++ .+..+.++++.++|+++.|-
T Consensus 82 -~~~~~v~-~~l~~~~~~~~~vi~~~ngv 108 (325)
T PRK00094 82 -QALREVL-KQLKPLLPPDAPIVWATKGI 108 (325)
T ss_pred -HHHHHHH-HHHHhhcCCCCEEEEEeecc
Confidence 5566666 35556678999999997653
No 99
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=98.61 E-value=3.9e-07 Score=93.12 Aligned_cols=116 Identities=20% Similarity=0.224 Sum_probs=84.9
Q ss_pred CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HH-----------HHhcC-------------cccc-ChhhhccC
Q psy6348 99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-ED-----------AAKLN-------------IASL-GLEDIWPL 152 (333)
Q Consensus 99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~-----------a~~~g-------------v~~~-~l~ell~~ 152 (333)
++|||||+|.||+.+|..+...|++|+.||+.... +. ..+.| ++.. ++++ +++
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-l~~ 84 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHA-LAD 84 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHH-hCC
Confidence 58999999999999999999999999999987532 21 12223 1122 5655 569
Q ss_pred CCEEEEecCCchhhHhhccHHHHhccCCCcEEE-EccCCcccchHhHHhhhhcCCceEEEeccCCCCC
Q psy6348 153 ADYITVHTPLIPQTKNLINAEVLKKCKKGVRVV-NVARGGIVDENALLDSLKCGHCGGAALDVFCEEP 219 (333)
Q Consensus 153 aDvV~l~~P~t~~t~~li~~~~~~~mk~gailI-N~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP 219 (333)
||+|+.++|...+.+..+-.+.-+.++++++|. |+|.-.+ ..+.++++. .-+..++..|.+-|
T Consensus 85 aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i---~~iA~~~~~-p~r~~G~HFf~Pap 148 (503)
T TIGR02279 85 AGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSI---TAIAAGLAR-PERVAGLHFFNPAP 148 (503)
T ss_pred CCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCH---HHHHHhcCc-ccceEEEeccCccc
Confidence 999999999988888877666667788888876 6655554 456676643 33457788887655
No 100
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=98.58 E-value=1.8e-07 Score=88.39 Aligned_cols=94 Identities=27% Similarity=0.296 Sum_probs=77.0
Q ss_pred ccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC--CHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhccH
Q psy6348 95 ELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV--SVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINA 172 (333)
Q Consensus 95 ~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~--~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~~ 172 (333)
-|+||||+|||||.-|..-|..|+..|.+|++=-+.- +.+.+++.|++..+.+|+.++||+|.+.+|+. ....++..
T Consensus 15 ~LkgK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~V~~v~ea~k~ADvim~L~PDe-~q~~vy~~ 93 (338)
T COG0059 15 LLKGKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFKVYTVEEAAKRADVVMILLPDE-QQKEVYEK 93 (338)
T ss_pred HhcCCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCEeecHHHHhhcCCEEEEeCchh-hHHHHHHH
Confidence 5899999999999999999999999999987643332 46788899999999999999999999999953 34556666
Q ss_pred HHHhccCCCcEEEEccCC
Q psy6348 173 EVLKKCKKGVRVVNVARG 190 (333)
Q Consensus 173 ~~~~~mk~gailIN~aRg 190 (333)
+.-..||+|+.|. .|.|
T Consensus 94 ~I~p~Lk~G~aL~-FaHG 110 (338)
T COG0059 94 EIAPNLKEGAALG-FAHG 110 (338)
T ss_pred HhhhhhcCCceEE-eccc
Confidence 7888899998553 4443
No 101
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.57 E-value=4.1e-07 Score=86.94 Aligned_cols=104 Identities=23% Similarity=0.288 Sum_probs=71.2
Q ss_pred CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHHh-----cC--------------ccc-cChhhhccCCCEEE
Q psy6348 99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAAK-----LN--------------IAS-LGLEDIWPLADYIT 157 (333)
Q Consensus 99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~-----~g--------------v~~-~~l~ell~~aDvV~ 157 (333)
++|+|||+|.||..+|..+...|++|++||+.... +...+ .+ +.. .++++++++||+|+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDlVi 84 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADLVI 84 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCEEE
Confidence 58999999999999999999999999999986522 22211 12 122 25777889999999
Q ss_pred EecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhc
Q psy6348 158 VHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKC 204 (333)
Q Consensus 158 l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~ 204 (333)
+++|...+.+.-+-.+.-..++++++++..+.| +....+.+.+..
T Consensus 85 ~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg--~~~~~l~~~~~~ 129 (311)
T PRK06130 85 EAVPEKLELKRDVFARLDGLCDPDTIFATNTSG--LPITAIAQAVTR 129 (311)
T ss_pred EeccCcHHHHHHHHHHHHHhCCCCcEEEECCCC--CCHHHHHhhcCC
Confidence 999976543333334443456777776544444 235577777653
No 102
>PRK07680 late competence protein ComER; Validated
Probab=98.52 E-value=5.8e-07 Score=84.56 Aligned_cols=100 Identities=11% Similarity=0.147 Sum_probs=74.1
Q ss_pred EEEEEecChHHHHHHHHHhhCCC----EEEEEcCCCCH-HHH-Hhc-Ccccc-ChhhhccCCCEEEEecCCchhhHhhcc
Q psy6348 100 TLAVLGLGRIGREVALRMQAFGM----KVIGFDPMVSV-EDA-AKL-NIASL-GLEDIWPLADYITVHTPLIPQTKNLIN 171 (333)
Q Consensus 100 tvGIIGlG~IG~~vA~~l~~~G~----~V~~~d~~~~~-~~a-~~~-gv~~~-~l~ell~~aDvV~l~~P~t~~t~~li~ 171 (333)
+|||||+|.||+.+++.|...|. +|.+|||+... +.. .+. |+... +..+++.++|+|++++| ......++
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav~-p~~~~~vl- 79 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICVK-PLDIYPLL- 79 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEecC-HHHHHHHH-
Confidence 69999999999999999988883 79999997522 222 222 55543 67788899999999998 34455555
Q ss_pred HHHHhccCCCcEEEEccCCcccchHhHHhhhh
Q psy6348 172 AEVLKKCKKGVRVVNVARGGIVDENALLDSLK 203 (333)
Q Consensus 172 ~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~ 203 (333)
++....++++.++|+++-| +..+.|.+.+.
T Consensus 80 ~~l~~~l~~~~~iis~~ag--~~~~~L~~~~~ 109 (273)
T PRK07680 80 QKLAPHLTDEHCLVSITSP--ISVEQLETLVP 109 (273)
T ss_pred HHHHhhcCCCCEEEEECCC--CCHHHHHHHcC
Confidence 4455667888999999854 36777776665
No 103
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.50 E-value=4.2e-07 Score=86.69 Aligned_cols=80 Identities=20% Similarity=0.227 Sum_probs=66.6
Q ss_pred ccccCCCEEEEEe-cChHHHHHHHHHhhCCCEEEEEc-CCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhc
Q psy6348 93 GTELYGKTLAVLG-LGRIGREVALRMQAFGMKVIGFD-PMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLI 170 (333)
Q Consensus 93 g~~l~gktvGIIG-lG~IG~~vA~~l~~~G~~V~~~d-~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li 170 (333)
+.++.||+++||| .|.||+.+|.+|...|+.|.+|+ ++. ++++++++||+|+.+++... ++
T Consensus 153 ~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~-------------~l~e~~~~ADIVIsavg~~~----~v 215 (296)
T PRK14188 153 HGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR-------------DLPAVCRRADILVAAVGRPE----MV 215 (296)
T ss_pred CCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC-------------CHHHHHhcCCEEEEecCChh----hc
Confidence 4578999999999 99999999999999999999996 432 46888999999999998643 44
Q ss_pred cHHHHhccCCCcEEEEccCCcc
Q psy6348 171 NAEVLKKCKKGVRVVNVARGGI 192 (333)
Q Consensus 171 ~~~~~~~mk~gailIN~aRg~~ 192 (333)
.... +|+|+++||++-..+
T Consensus 216 ~~~~---lk~GavVIDvGin~~ 234 (296)
T PRK14188 216 KGDW---IKPGATVIDVGINRI 234 (296)
T ss_pred chhe---ecCCCEEEEcCCccc
Confidence 4433 899999999986543
No 104
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=98.50 E-value=8.7e-07 Score=78.68 Aligned_cols=113 Identities=22% Similarity=0.244 Sum_probs=77.3
Q ss_pred EEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHH----Hh-------cC-------------ccc-cChhhhccCC
Q psy6348 100 TLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDA----AK-------LN-------------IAS-LGLEDIWPLA 153 (333)
Q Consensus 100 tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a----~~-------~g-------------v~~-~~l~ell~~a 153 (333)
+|+|||.|.||+.+|..+...|++|..||+.... +.+ ++ .| +.+ .+++++. +|
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~a 79 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-DA 79 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-TE
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-hh
Confidence 6999999999999999999999999999997632 111 11 11 112 2688888 99
Q ss_pred CEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCC
Q psy6348 154 DYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFC 216 (333)
Q Consensus 154 DvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~ 216 (333)
|+|+=++|...+.+.-+-++.-+.++++++|...+.+ +...+|...+. ..-+-.++-.|.
T Consensus 80 dlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSs--l~i~~la~~~~-~p~R~ig~Hf~~ 139 (180)
T PF02737_consen 80 DLVIEAIPEDLELKQELFAELDEICPPDTILASNTSS--LSISELAAALS-RPERFIGMHFFN 139 (180)
T ss_dssp SEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SS--S-HHHHHTTSS-TGGGEEEEEE-S
T ss_pred heehhhccccHHHHHHHHHHHHHHhCCCceEEecCCC--CCHHHHHhccC-cCceEEEEeccc
Confidence 9999999988888887778877888999998877554 55666777764 333346777674
No 105
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.49 E-value=5.2e-07 Score=84.12 Aligned_cols=100 Identities=14% Similarity=0.223 Sum_probs=73.2
Q ss_pred EEEEEecChHHHHHHHHHhhCCCE---EEEEcCCCCH-HHH-Hhc-Ccccc-ChhhhccCCCEEEEecCCchhhHhhccH
Q psy6348 100 TLAVLGLGRIGREVALRMQAFGMK---VIGFDPMVSV-EDA-AKL-NIASL-GLEDIWPLADYITVHTPLIPQTKNLINA 172 (333)
Q Consensus 100 tvGIIGlG~IG~~vA~~l~~~G~~---V~~~d~~~~~-~~a-~~~-gv~~~-~l~ell~~aDvV~l~~P~t~~t~~li~~ 172 (333)
+|||||+|+||+.+++.|...|.. +.+|++.... +.. ... ++... +.+++++++|+|++++| ......++..
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~-p~~~~~vl~~ 80 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVR-PQIAEEVLRA 80 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeC-HHHHHHHHHH
Confidence 799999999999999999887753 5788886532 222 223 35443 78888999999999999 4455555532
Q ss_pred HHHhccCCCcEEEEccCCcccchHhHHhhhhcC
Q psy6348 173 EVLKKCKKGVRVVNVARGGIVDENALLDSLKCG 205 (333)
Q Consensus 173 ~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g 205 (333)
+ .++++.++|.++ .-+..+.|.+.+..+
T Consensus 81 --l-~~~~~~~vis~~--ag~~~~~l~~~~~~~ 108 (258)
T PRK06476 81 --L-RFRPGQTVISVI--AATDRAALLEWIGHD 108 (258)
T ss_pred --h-ccCCCCEEEEEC--CCCCHHHHHHHhCCC
Confidence 2 257889999987 347888888887654
No 106
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=98.48 E-value=5.1e-07 Score=79.42 Aligned_cols=90 Identities=23% Similarity=0.297 Sum_probs=74.1
Q ss_pred cccCCCEEEEEecChH-HHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhccH
Q psy6348 94 TELYGKTLAVLGLGRI-GREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINA 172 (333)
Q Consensus 94 ~~l~gktvGIIGlG~I-G~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~~ 172 (333)
..+.||++.|||.|.+ |..+|+.|...|.+|+.++++. .++.+.+++||+|+.+++.. +++..
T Consensus 40 ~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~------------~~l~~~l~~aDiVIsat~~~----~ii~~ 103 (168)
T cd01080 40 IDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT------------KNLKEHTKQADIVIVAVGKP----GLVKG 103 (168)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc------------hhHHHHHhhCCEEEEcCCCC----ceecH
Confidence 4689999999999996 8889999999999999999852 24678899999999999742 26777
Q ss_pred HHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceE
Q psy6348 173 EVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGG 209 (333)
Q Consensus 173 ~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~g 209 (333)
+. ++++.++||++....+| ..+|++.|
T Consensus 104 ~~---~~~~~viIDla~prdvd-------~~~~~~~G 130 (168)
T cd01080 104 DM---VKPGAVVIDVGINRVPD-------KSGGKLVG 130 (168)
T ss_pred HH---ccCCeEEEEccCCCccc-------ccCCCeeC
Confidence 75 58899999999988777 45566654
No 107
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=98.46 E-value=6.1e-07 Score=77.74 Aligned_cols=90 Identities=22% Similarity=0.325 Sum_probs=63.4
Q ss_pred EEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHHhcC--------c------cc-cChhhhccCCCEEEEecCCc
Q psy6348 100 TLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAAKLN--------I------AS-LGLEDIWPLADYITVHTPLI 163 (333)
Q Consensus 100 tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~g--------v------~~-~~l~ell~~aDvV~l~~P~t 163 (333)
||+|+|.|++|.++|..|...|.+|..|++.... +...+.+ . .. .+++++++++|+|++++|.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavPs- 79 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVPS- 79 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-G-
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecccH-
Confidence 6899999999999999999999999999996521 2222111 1 11 2688999999999999994
Q ss_pred hhhHhhccHHHHhccCCCcEEEEccCCc
Q psy6348 164 PQTKNLINAEVLKKCKKGVRVVNVARGG 191 (333)
Q Consensus 164 ~~t~~li~~~~~~~mk~gailIN~aRg~ 191 (333)
...+.++ ++....++++..+|++..|=
T Consensus 80 ~~~~~~~-~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 80 QAHREVL-EQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp GGHHHHH-HHHTTTSHTT-EEEETS-SE
T ss_pred HHHHHHH-HHHhhccCCCCEEEEecCCc
Confidence 3334443 56667788999999998763
No 108
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=98.45 E-value=1.2e-06 Score=84.57 Aligned_cols=107 Identities=20% Similarity=0.201 Sum_probs=76.7
Q ss_pred CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccc-----------------cChhhhccCCCEEEEecC
Q psy6348 99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIAS-----------------LGLEDIWPLADYITVHTP 161 (333)
Q Consensus 99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~-----------------~~l~ell~~aDvV~l~~P 161 (333)
++|+|||.|.||+.+|..|...|++|.+||+....+...+.|... .+..+.++.+|+|++++|
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vil~vk 82 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDPAALATADLVLVTVK 82 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHHHHHHHhcCceeecCCCcceecccceeEeccChhhccCCCEEEEEec
Confidence 579999999999999999999999999999854333334444321 122256789999999998
Q ss_pred CchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCce
Q psy6348 162 LIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCG 208 (333)
Q Consensus 162 ~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~ 208 (333)
. +.....+ +...+.++++.++|.+.- ++-..+.+.+.+...++.
T Consensus 83 ~-~~~~~~~-~~l~~~~~~~~iii~~~n-G~~~~~~l~~~~~~~~~~ 126 (341)
T PRK08229 83 S-AATADAA-AALAGHARPGAVVVSFQN-GVRNADVLRAALPGATVL 126 (341)
T ss_pred C-cchHHHH-HHHHhhCCCCCEEEEeCC-CCCcHHHHHHhCCCCcEE
Confidence 5 4445554 455667789999998854 455566677777665543
No 109
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.44 E-value=5.8e-07 Score=85.21 Aligned_cols=81 Identities=23% Similarity=0.299 Sum_probs=68.8
Q ss_pred ccccCCCEEEEEecChH-HHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhcc
Q psy6348 93 GTELYGKTLAVLGLGRI-GREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLIN 171 (333)
Q Consensus 93 g~~l~gktvGIIGlG~I-G~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~ 171 (333)
+.++.||++.|||.|.+ |+.+|..|...|+.|+.++... .++.+.+++||+|+.++| +.++++
T Consensus 153 ~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t------------~~l~~~~~~ADIVV~avG----~~~~i~ 216 (285)
T PRK14189 153 GIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKT------------RDLAAHTRQADIVVAAVG----KRNVLT 216 (285)
T ss_pred CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCCC------------CCHHHHhhhCCEEEEcCC----CcCccC
Confidence 56799999999999998 9999999999999999886531 257889999999999998 356787
Q ss_pred HHHHhccCCCcEEEEccCCcc
Q psy6348 172 AEVLKKCKKGVRVVNVARGGI 192 (333)
Q Consensus 172 ~~~~~~mk~gailIN~aRg~~ 192 (333)
. +.+|+|+++||++...+
T Consensus 217 ~---~~ik~gavVIDVGin~~ 234 (285)
T PRK14189 217 A---DMVKPGATVIDVGMNRD 234 (285)
T ss_pred H---HHcCCCCEEEEcccccc
Confidence 7 45799999999986553
No 110
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.40 E-value=8.2e-07 Score=84.16 Aligned_cols=80 Identities=23% Similarity=0.255 Sum_probs=66.7
Q ss_pred ccccCCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhcc
Q psy6348 93 GTELYGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLIN 171 (333)
Q Consensus 93 g~~l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~ 171 (333)
+.++.||+++|||. |.||+.+|.+|...|+.|..|.... .++.+..++||+|+.+++.. +++.
T Consensus 153 ~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~t------------~~l~~~~~~ADIVI~avg~~----~~v~ 216 (284)
T PRK14179 153 NVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSRT------------RNLAEVARKADILVVAIGRG----HFVT 216 (284)
T ss_pred CCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCCC------------CCHHHHHhhCCEEEEecCcc----ccCC
Confidence 56899999999999 9999999999999999999995321 15788899999999999853 3455
Q ss_pred HHHHhccCCCcEEEEccCCc
Q psy6348 172 AEVLKKCKKGVRVVNVARGG 191 (333)
Q Consensus 172 ~~~~~~mk~gailIN~aRg~ 191 (333)
... +|+|+++||++-..
T Consensus 217 ~~~---ik~GavVIDvgin~ 233 (284)
T PRK14179 217 KEF---VKEGAVVIDVGMNR 233 (284)
T ss_pred HHH---ccCCcEEEEeccee
Confidence 443 89999999997554
No 111
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.40 E-value=2.4e-06 Score=80.75 Aligned_cols=101 Identities=16% Similarity=0.229 Sum_probs=73.8
Q ss_pred CEEEEEecChHHHHHHHHHhhCC----CEEEEEcCCCCH--HHH-Hhc-Cccc-cChhhhccCCCEEEEecCCchhhHhh
Q psy6348 99 KTLAVLGLGRIGREVALRMQAFG----MKVIGFDPMVSV--EDA-AKL-NIAS-LGLEDIWPLADYITVHTPLIPQTKNL 169 (333)
Q Consensus 99 ktvGIIGlG~IG~~vA~~l~~~G----~~V~~~d~~~~~--~~a-~~~-gv~~-~~l~ell~~aDvV~l~~P~t~~t~~l 169 (333)
.+|+|||+|+||+.+++.+...| .+|++|+++... +.. ... ++.. .+.+++++++|+|++++| ......+
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVilavp-p~~~~~v 80 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFICVP-PLAVLPL 80 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEecC-HHHHHHH
Confidence 47999999999999999998887 689999986422 111 222 2332 367788999999999999 3344444
Q ss_pred ccHHHHhccCCCcEEEEccCCcccchHhHHhhhh
Q psy6348 170 INAEVLKKCKKGVRVVNVARGGIVDENALLDSLK 203 (333)
Q Consensus 170 i~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~ 203 (333)
+ .+....++++..+|.+.-| +..+.|.+.+.
T Consensus 81 l-~~l~~~l~~~~~ivS~~aG--i~~~~l~~~~~ 111 (277)
T PRK06928 81 L-KDCAPVLTPDRHVVSIAAG--VSLDDLLEITP 111 (277)
T ss_pred H-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcC
Confidence 4 3444557788899999888 67778888764
No 112
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=98.38 E-value=6e-07 Score=75.92 Aligned_cols=97 Identities=31% Similarity=0.397 Sum_probs=68.9
Q ss_pred ccCCCEEEEEecChHHHHHHHHHhhCCCE-EEEEcCCCCH--HHHHhc---Ccccc---ChhhhccCCCEEEEecCCchh
Q psy6348 95 ELYGKTLAVLGLGRIGREVALRMQAFGMK-VIGFDPMVSV--EDAAKL---NIASL---GLEDIWPLADYITVHTPLIPQ 165 (333)
Q Consensus 95 ~l~gktvGIIGlG~IG~~vA~~l~~~G~~-V~~~d~~~~~--~~a~~~---gv~~~---~l~ell~~aDvV~l~~P~t~~ 165 (333)
++.|+++.|||.|.+|+.++..|...|++ |+.++|+... +.++.. .+... ++.+.+.++|+|+.++|....
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~~~ 88 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPSGMP 88 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SSTTST
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCCCCc
Confidence 68999999999999999999999999996 9999997532 223333 23333 455667999999999985432
Q ss_pred hHhhccHHHHhccCCCc-EEEEccCCcccc
Q psy6348 166 TKNLINAEVLKKCKKGV-RVVNVARGGIVD 194 (333)
Q Consensus 166 t~~li~~~~~~~mk~ga-ilIN~aRg~~vd 194 (333)
.+.++.++..++.. ++++.+...-++
T Consensus 89 ---~i~~~~~~~~~~~~~~v~Dla~Pr~i~ 115 (135)
T PF01488_consen 89 ---IITEEMLKKASKKLRLVIDLAVPRDID 115 (135)
T ss_dssp ---SSTHHHHTTTCHHCSEEEES-SS-SB-
T ss_pred ---ccCHHHHHHHHhhhhceeccccCCCCC
Confidence 67777776555433 888887655444
No 113
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=98.38 E-value=1.4e-06 Score=87.98 Aligned_cols=109 Identities=16% Similarity=0.145 Sum_probs=88.5
Q ss_pred HHHHHHHHHhhCCCEEEEEcCCCCH-HHHHh-c----Ccccc-ChhhhccC---CCEEEEecCCchhhHhhccHHHHhcc
Q psy6348 109 IGREVALRMQAFGMKVIGFDPMVSV-EDAAK-L----NIASL-GLEDIWPL---ADYITVHTPLIPQTKNLINAEVLKKC 178 (333)
Q Consensus 109 IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~-~----gv~~~-~l~ell~~---aDvV~l~~P~t~~t~~li~~~~~~~m 178 (333)
||+.||++|...|++|.+||++.+. +...+ . |+..+ +++++++. +|+|++++|..+.+..++ ...++.|
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi-~~l~~~l 79 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVI-EQLLPLL 79 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHH-HHHHhcC
Confidence 7999999999999999999998733 33333 2 35443 78888764 899999999999999998 5688999
Q ss_pred CCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCC
Q psy6348 179 KKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEE 218 (333)
Q Consensus 179 k~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~E 218 (333)
.+|.++||++....-+...+.+.+++..+.....=|...+
T Consensus 80 ~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~ 119 (459)
T PRK09287 80 EKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGE 119 (459)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCH
Confidence 9999999999999999999999999888864444455444
No 114
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.37 E-value=1.7e-06 Score=80.84 Aligned_cols=99 Identities=18% Similarity=0.194 Sum_probs=70.2
Q ss_pred CEEEEEecChHHHHHHHHHhhCC---CEEEEEcCCCC-HHHHHh-cCcccc-ChhhhccCCCEEEEecCCchhhHhhccH
Q psy6348 99 KTLAVLGLGRIGREVALRMQAFG---MKVIGFDPMVS-VEDAAK-LNIASL-GLEDIWPLADYITVHTPLIPQTKNLINA 172 (333)
Q Consensus 99 ktvGIIGlG~IG~~vA~~l~~~G---~~V~~~d~~~~-~~~a~~-~gv~~~-~l~ell~~aDvV~l~~P~t~~t~~li~~ 172 (333)
++|+|||+|.||+.+++.+...| .+|.+||++.. .+...+ +|+... +.++++.++|+|++++|. ...+.++ +
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~v~~-~~~~~v~-~ 80 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAVKP-QVMEEVL-S 80 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEEcCH-HHHHHHH-H
Confidence 58999999999999999999888 78999999752 223333 366543 677888999999999983 3344444 2
Q ss_pred HHHhccCCCcEEEEccCCcccchHhHHhhhh
Q psy6348 173 EVLKKCKKGVRVVNVARGGIVDENALLDSLK 203 (333)
Q Consensus 173 ~~~~~mk~gailIN~aRg~~vd~~aL~~aL~ 203 (333)
+....+ +..+|++.-|- ..+.+.+.+.
T Consensus 81 ~l~~~~--~~~vvs~~~gi--~~~~l~~~~~ 107 (267)
T PRK11880 81 ELKGQL--DKLVVSIAAGV--TLARLERLLG 107 (267)
T ss_pred HHHhhc--CCEEEEecCCC--CHHHHHHhcC
Confidence 233333 46888886653 5666776665
No 115
>KOG2380|consensus
Probab=98.31 E-value=8.8e-06 Score=78.11 Aligned_cols=139 Identities=17% Similarity=0.187 Sum_probs=98.9
Q ss_pred CCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCcccc-Chhhhcc-CCCEEEEecCCchhhHhhccHHHH
Q psy6348 98 GKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASL-GLEDIWP-LADYITVHTPLIPQTKNLINAEVL 175 (333)
Q Consensus 98 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~-~l~ell~-~aDvV~l~~P~t~~t~~li~~~~~ 175 (333)
-++|||||+|++|+-+|+.+...|+.|+.+||..-...++.+|.... .+.++++ ..|+|++|+. -..+..++..--+
T Consensus 52 tl~IaIIGfGnmGqflAetli~aGh~li~hsRsdyssaa~~yg~~~ft~lhdlcerhpDvvLlcts-ilsiekilatypf 130 (480)
T KOG2380|consen 52 TLVIAIIGFGNMGQFLAETLIDAGHGLICHSRSDYSSAAEKYGSAKFTLLHDLCERHPDVVLLCTS-ILSIEKILATYPF 130 (480)
T ss_pred ceEEEEEecCcHHHHHHHHHHhcCceeEecCcchhHHHHHHhcccccccHHHHHhcCCCEEEEEeh-hhhHHHHHHhcCc
Confidence 35899999999999999999999999999999765556677887654 5777775 5999999986 3455566555567
Q ss_pred hccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCccchhhcCCCcEEEccCCC
Q psy6348 176 KKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLG 241 (333)
Q Consensus 176 ~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~L~~~pnvi~TPHi~ 241 (333)
+++|.|++++++-.-.....+++.+-|-+.--.-..=-.|.++. .. +....+|=|+.--.+|
T Consensus 131 qrlrrgtlfvdvlSvKefek~lfekYLPkdfDIlctHpmfGPks-vn---h~wqglpfVydkvRig 192 (480)
T KOG2380|consen 131 QRLRRGTLFVDVLSVKEFEKELFEKYLPKDFDILCTHPMFGPKS-VN---HEWQGLPFVYDKVRIG 192 (480)
T ss_pred hhhccceeEeeeeecchhHHHHHHHhCccccceEeecCCcCCCc-CC---CccccCceEEEEeecc
Confidence 78999999999988888888888887755422112222333331 11 2344566666655554
No 116
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=98.31 E-value=4.1e-06 Score=81.65 Aligned_cols=93 Identities=15% Similarity=0.172 Sum_probs=73.5
Q ss_pred HHHHHHHHhhCCCEEEEEcCCCC------HHHHHhcCcccc-ChhhhccCCCEEEEecCCchhhHhhccHHHHhccCCCc
Q psy6348 110 GREVALRMQAFGMKVIGFDPMVS------VEDAAKLNIASL-GLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGV 182 (333)
Q Consensus 110 G~~vA~~l~~~G~~V~~~d~~~~------~~~a~~~gv~~~-~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~mk~ga 182 (333)
|..+|.+|...|++|++||++.. .+.....|+... +..+++++||+|++++|....++.++ ......+++++
T Consensus 32 G~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl-~~L~~~L~~g~ 110 (342)
T PRK12557 32 GSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDAGVKVVSDDAEAAKHGEIHILFTPFGKKTVEIA-KNILPHLPENA 110 (342)
T ss_pred HHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHCCCEEeCCHHHHHhCCCEEEEECCCcHHHHHHH-HHHHhhCCCCC
Confidence 78999999999999999998653 123445677654 67788999999999999655477777 46778899999
Q ss_pred EEEEccCCcccch-HhHHhhhh
Q psy6348 183 RVVNVARGGIVDE-NALLDSLK 203 (333)
Q Consensus 183 ilIN~aRg~~vd~-~aL~~aL~ 203 (333)
++||++.+..... +.+.+.+.
T Consensus 111 IVId~ST~~~~~~s~~l~~~l~ 132 (342)
T PRK12557 111 VICNTCTVSPVVLYYSLEGELR 132 (342)
T ss_pred EEEEecCCCHHHHHHHHHHHhc
Confidence 9999999987766 56666664
No 117
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=98.30 E-value=3.6e-06 Score=76.17 Aligned_cols=89 Identities=27% Similarity=0.329 Sum_probs=66.1
Q ss_pred CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH---HHHHhcCc--cccChhhhccCCCEEEEecCCchhhHhhccHH
Q psy6348 99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV---EDAAKLNI--ASLGLEDIWPLADYITVHTPLIPQTKNLINAE 173 (333)
Q Consensus 99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~---~~a~~~gv--~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~ 173 (333)
++++|+|.|+||+.+|+++...|++|+.-.++.+. ..++.++. +..+.++..+.+|+|++++|.. ....++ ++
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~~-a~~~v~-~~ 79 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPFE-AIPDVL-AE 79 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccHH-HHHhHH-HH
Confidence 68999999999999999999999999988665432 12233333 3347899999999999999963 333332 55
Q ss_pred HHhccCCCcEEEEccCC
Q psy6348 174 VLKKCKKGVRVVNVARG 190 (333)
Q Consensus 174 ~~~~mk~gailIN~aRg 190 (333)
....+. |.++|++.-.
T Consensus 80 l~~~~~-~KIvID~tnp 95 (211)
T COG2085 80 LRDALG-GKIVIDATNP 95 (211)
T ss_pred HHHHhC-CeEEEecCCC
Confidence 555555 8999998654
No 118
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.30 E-value=5.8e-06 Score=76.11 Aligned_cols=104 Identities=19% Similarity=0.253 Sum_probs=70.8
Q ss_pred CCCEEEEEecChHHHHHHHHHhhCC---CE-EEEEcCCC-C-HH-HHHhcCccc-cChhhhccCCCEEEEecCCchhhHh
Q psy6348 97 YGKTLAVLGLGRIGREVALRMQAFG---MK-VIGFDPMV-S-VE-DAAKLNIAS-LGLEDIWPLADYITVHTPLIPQTKN 168 (333)
Q Consensus 97 ~gktvGIIGlG~IG~~vA~~l~~~G---~~-V~~~d~~~-~-~~-~a~~~gv~~-~~l~ell~~aDvV~l~~P~t~~t~~ 168 (333)
..++|||||.|+||+.++..+...| .+ ++++++.. . .+ .....++.. .+++++++++|+|++++|.. ..+.
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViiavp~~-~~~~ 81 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAMPPS-AHEE 81 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEecCHH-HHHH
Confidence 3578999999999999999987665 33 77787642 1 22 223356654 36888999999999999943 3344
Q ss_pred hccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcC
Q psy6348 169 LINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCG 205 (333)
Q Consensus 169 li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g 205 (333)
++ ++.-..++ +.++|+++-| ++.+.|.+.+..+
T Consensus 82 v~-~~l~~~~~-~~~vis~~~g--i~~~~l~~~~~~~ 114 (245)
T PRK07634 82 LL-AELSPLLS-NQLVVTVAAG--IGPSYLEERLPKG 114 (245)
T ss_pred HH-HHHHhhcc-CCEEEEECCC--CCHHHHHHHcCCC
Confidence 43 22223344 6799999777 5666677777554
No 119
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=98.30 E-value=7.5e-06 Score=80.13 Aligned_cols=144 Identities=22% Similarity=0.253 Sum_probs=96.9
Q ss_pred CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHH--------------------HhcC-ccccChhhhccCCCEEE
Q psy6348 99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDA--------------------AKLN-IASLGLEDIWPLADYIT 157 (333)
Q Consensus 99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a--------------------~~~g-v~~~~l~ell~~aDvV~ 157 (333)
.+|||||||-||..+|..+...|++|+|||-....-.. .+.| ++..+--+.++.||+++
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l~~~dv~i 89 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEELKECDVFI 89 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhhcccCCEEE
Confidence 69999999999999999999999999999965422111 1112 12222223456999999
Q ss_pred EecCCchhhHh-------hc--cHHHHhccCCCcEEEEccCCcccchHhHHhhhhcC--CceEEEeccC---CCCC-CCC
Q psy6348 158 VHTPLIPQTKN-------LI--NAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCG--HCGGAALDVF---CEEP-PKS 222 (333)
Q Consensus 158 l~~P~t~~t~~-------li--~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g--~i~gaalDV~---~~EP-~~~ 222 (333)
+|+| ||-+.. +. .+..-+.||+|.++|==|.-.+=.++.++.-|.+. .+. ..-|++ .+|- .+.
T Consensus 90 I~VP-TPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~-~~~Df~laysPERv~PG 167 (436)
T COG0677 90 ICVP-TPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLK-FGEDFYLAYSPERVLPG 167 (436)
T ss_pred EEec-CCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCc-ccceeeEeeCccccCCC
Confidence 9999 453331 11 13456779999999999998888888888877664 333 345653 4553 122
Q ss_pred ccchhhcCCCcEEEccCCCCCcHHHHH
Q psy6348 223 EQTFELIKHPKVIVTPHLGASTKEAQI 249 (333)
Q Consensus 223 ~~~~~L~~~pnvi~TPHi~~~t~ea~~ 249 (333)
...+.+.+.|+| +||.|++..+
T Consensus 168 ~~~~el~~~~kV-----IgG~tp~~~e 189 (436)
T COG0677 168 NVLKELVNNPKV-----IGGVTPKCAE 189 (436)
T ss_pred chhhhhhcCCce-----eecCCHHHHH
Confidence 223567788888 4888876543
No 120
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=98.29 E-value=1.4e-06 Score=77.69 Aligned_cols=138 Identities=19% Similarity=0.207 Sum_probs=78.0
Q ss_pred CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcC---------------------ccc-cChhhhccCCCEE
Q psy6348 99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLN---------------------IAS-LGLEDIWPLADYI 156 (333)
Q Consensus 99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g---------------------v~~-~~l~ell~~aDvV 156 (333)
++|+|||+|.+|..+|..+...|++|++||.....-.....| +.. .+.++.+++||++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv~ 80 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADVV 80 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SEE
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccceE
Confidence 589999999999999999999999999999754221111111 112 2567778999999
Q ss_pred EEecCCchhhHh------hc--cHHHHhccCCCcEEEEccCCcccchHhHH-hhhhcCCceEEEec-cCCCCCCC-Cccc
Q psy6348 157 TVHTPLIPQTKN------LI--NAEVLKKCKKGVRVVNVARGGIVDENALL-DSLKCGHCGGAALD-VFCEEPPK-SEQT 225 (333)
Q Consensus 157 ~l~~P~t~~t~~------li--~~~~~~~mk~gailIN~aRg~~vd~~aL~-~aL~~g~i~gaalD-V~~~EP~~-~~~~ 225 (333)
++|+|......+ +. -+...+.++++.++|.-|.-.+=..+.+. ..|++..-.+.-++ +|.+|=.. ....
T Consensus 81 ~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~PErl~~G~a~ 160 (185)
T PF03721_consen 81 FICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYSPERLREGRAI 160 (185)
T ss_dssp EE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE------TTSHH
T ss_pred EEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCCeEEECCCccCCCCcc
Confidence 999983322222 21 24556778999999999998887777433 44443221110111 14555322 1123
Q ss_pred hhhcCCCcEEE
Q psy6348 226 FELIKHPKVIV 236 (333)
Q Consensus 226 ~~L~~~pnvi~ 236 (333)
..+.+.|+|+.
T Consensus 161 ~d~~~~~rvV~ 171 (185)
T PF03721_consen 161 EDFRNPPRVVG 171 (185)
T ss_dssp HHHHSSSEEEE
T ss_pred hhccCCCEEEE
Confidence 56788889873
No 121
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=98.29 E-value=5.1e-07 Score=82.12 Aligned_cols=130 Identities=16% Similarity=0.132 Sum_probs=90.0
Q ss_pred hHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCCCEEEEEecChHHHHHHHHH--hhCCCEEEE-EcCCCCH
Q psy6348 57 ISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRM--QAFGMKVIG-FDPMVSV 133 (333)
Q Consensus 57 ~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l--~~~G~~V~~-~d~~~~~ 133 (333)
...++|.+..++...|++... . ..++++|||+|.+|+.+++.+ ...|+++++ +|+.+..
T Consensus 61 ~~~~gy~v~~l~~~~~~~l~~---------~---------~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~~ 122 (213)
T PRK05472 61 KRGVGYNVEELLEFIEKILGL---------D---------RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPEK 122 (213)
T ss_pred CCCCCeeHHHHHHHHHHHhCC---------C---------CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChhh
Confidence 455678888888888776521 1 235899999999999999853 467899887 4664322
Q ss_pred HHHHhcCcc---ccChhhhccC--CCEEEEecCCchh---hHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhc
Q psy6348 134 EDAAKLNIA---SLGLEDIWPL--ADYITVHTPLIPQ---TKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKC 204 (333)
Q Consensus 134 ~~a~~~gv~---~~~l~ell~~--aDvV~l~~P~t~~---t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~ 204 (333)
....-.|+. ..++++++++ .|.+++++|.... ...+.......-|...++.+|+.+|-+|+..+|..+|..
T Consensus 123 ~~~~i~g~~v~~~~~l~~li~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~~~p~~~~v~~~~~v~~~~l~~~l~~ 201 (213)
T PRK05472 123 IGTKIGGIPVYHIDELEEVVKENDIEIGILTVPAEAAQEVADRLVEAGIKGILNFAPVRLSVPEDVIVRNVDLTVELQT 201 (213)
T ss_pred cCCEeCCeEEcCHHHHHHHHHHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEeecCceeecCCCCCEEEEechHHHHHH
Confidence 110111221 1257777754 9999999997664 222333334455677789999999999999999999874
No 122
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=98.27 E-value=5.5e-06 Score=64.53 Aligned_cols=67 Identities=33% Similarity=0.469 Sum_probs=56.9
Q ss_pred cccCCCEEEEEecChHHHHHHHHHhhC-CCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhccH
Q psy6348 94 TELYGKTLAVLGLGRIGREVALRMQAF-GMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINA 172 (333)
Q Consensus 94 ~~l~gktvGIIGlG~IG~~vA~~l~~~-G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~~ 172 (333)
..+.+++++|+|.|.+|+.++..+... +.+|.+||+ |+++.++|. .+.+.+
T Consensus 19 ~~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r------------------------di~i~~~~~----~~~~~~ 70 (86)
T cd05191 19 KSLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR------------------------DILVTATPA----GVPVLE 70 (86)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC------------------------CEEEEcCCC----CCCchH
Confidence 458899999999999999999999998 678999988 999999874 344555
Q ss_pred HHHhccCCCcEEEEcc
Q psy6348 173 EVLKKCKKGVRVVNVA 188 (333)
Q Consensus 173 ~~~~~mk~gailIN~a 188 (333)
+..+.+++++++++++
T Consensus 71 ~~~~~~~~~~~v~~~a 86 (86)
T cd05191 71 EATAKINEGAVVIDLA 86 (86)
T ss_pred HHHHhcCCCCEEEecC
Confidence 5678899999999874
No 123
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=98.25 E-value=4e-06 Score=78.86 Aligned_cols=104 Identities=16% Similarity=0.242 Sum_probs=69.3
Q ss_pred CEEEEEecChHHHHHHHHHhhC--CCEE-EEEcCCCCH--HHHHhcCccc-cChhhhccCCCEEEEecCCchhhHhhccH
Q psy6348 99 KTLAVLGLGRIGREVALRMQAF--GMKV-IGFDPMVSV--EDAAKLNIAS-LGLEDIWPLADYITVHTPLIPQTKNLINA 172 (333)
Q Consensus 99 ktvGIIGlG~IG~~vA~~l~~~--G~~V-~~~d~~~~~--~~a~~~gv~~-~~l~ell~~aDvV~l~~P~t~~t~~li~~ 172 (333)
.++||||+|.||+.+++.+... ++++ .+||+.... +.++..+... .++++++.++|+|++|+|.... . +
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell~~~DvVvi~a~~~~~-~----~ 76 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELVEDVDLVVECASVNAV-E----E 76 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHhcCCCEEEEcCChHHH-H----H
Confidence 4899999999999999988765 5664 468886532 2223445543 3799999999999999983221 1 1
Q ss_pred HHHhccCCCcEEEEccCCcccch---HhHHhhhhcCCc
Q psy6348 173 EVLKKCKKGVRVVNVARGGIVDE---NALLDSLKCGHC 207 (333)
Q Consensus 173 ~~~~~mk~gailIN~aRg~~vd~---~aL~~aL~~g~i 207 (333)
-....++.|.-++..+.|.+.|. +.|.++.+++..
T Consensus 77 ~~~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~ 114 (265)
T PRK13304 77 VVPKSLENGKDVIIMSVGALADKELFLKLYKLAKENNC 114 (265)
T ss_pred HHHHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcCC
Confidence 12233455666677777777653 456666666543
No 124
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=98.25 E-value=7.9e-06 Score=76.86 Aligned_cols=97 Identities=24% Similarity=0.281 Sum_probs=75.9
Q ss_pred CEEEEEecChHHHHHHHHHhhCC----CEEEEEcCCCCH--HHHHhcCccc-cChhhhccCCCEEEEecCCchhhHhhcc
Q psy6348 99 KTLAVLGLGRIGREVALRMQAFG----MKVIGFDPMVSV--EDAAKLNIAS-LGLEDIWPLADYITVHTPLIPQTKNLIN 171 (333)
Q Consensus 99 ktvGIIGlG~IG~~vA~~l~~~G----~~V~~~d~~~~~--~~a~~~gv~~-~~l~ell~~aDvV~l~~P~t~~t~~li~ 171 (333)
++|||||+|+||++++..+...| -+|++.+|.... ..+.++|+.. .+.+++..++|+|++++. |.. -
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~~~advv~LavK--Pq~----~ 75 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEEADVVFLAVK--PQD----L 75 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcccCcHHHHHhhCCEEEEEeC--hHh----H
Confidence 58999999999999999999888 589999997633 2456777763 367789999999999996 321 2
Q ss_pred HHHHhccC---CCcEEEEccCCcccchHhHHhhhh
Q psy6348 172 AEVLKKCK---KGVRVVNVARGGIVDENALLDSLK 203 (333)
Q Consensus 172 ~~~~~~mk---~gailIN~aRg~~vd~~aL~~aL~ 203 (333)
.+.++.++ ++.++|.++-| +..+.|.+++.
T Consensus 76 ~~vl~~l~~~~~~~lvISiaAG--v~~~~l~~~l~ 108 (266)
T COG0345 76 EEVLSKLKPLTKDKLVISIAAG--VSIETLERLLG 108 (266)
T ss_pred HHHHHHhhcccCCCEEEEEeCC--CCHHHHHHHcC
Confidence 44445554 79999999888 67778888876
No 125
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=98.25 E-value=4.8e-06 Score=75.90 Aligned_cols=91 Identities=21% Similarity=0.202 Sum_probs=63.1
Q ss_pred CEEEEEe-cChHHHHHHHHHhhCCCEEEEEcCCCCHH-HHHh--------cCc----cccChhhhccCCCEEEEecCCch
Q psy6348 99 KTLAVLG-LGRIGREVALRMQAFGMKVIGFDPMVSVE-DAAK--------LNI----ASLGLEDIWPLADYITVHTPLIP 164 (333)
Q Consensus 99 ktvGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~~~~-~a~~--------~gv----~~~~l~ell~~aDvV~l~~P~t~ 164 (333)
++|+||| .|+||+.+|+.|...|.+|.+|++..... ...+ .|+ ...+..+.++++|+|++++|. .
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilavp~-~ 79 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAVPW-D 79 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEECCH-H
Confidence 3799997 89999999999999999999999865221 1111 122 123567788999999999994 3
Q ss_pred hhHhhccHHHHhccCCCcEEEEccCCcc
Q psy6348 165 QTKNLINAEVLKKCKKGVRVVNVARGGI 192 (333)
Q Consensus 165 ~t~~li~~~~~~~mk~gailIN~aRg~~ 192 (333)
....++ ++.-..++ +.++|+++-|--
T Consensus 80 ~~~~~l-~~l~~~l~-~~vvI~~~ngi~ 105 (219)
T TIGR01915 80 HVLKTL-ESLRDELS-GKLVISPVVPLA 105 (219)
T ss_pred HHHHHH-HHHHHhcc-CCEEEEeccCce
Confidence 344444 22223344 589999977743
No 126
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.23 E-value=4e-06 Score=79.60 Aligned_cols=80 Identities=20% Similarity=0.264 Sum_probs=67.9
Q ss_pred ccccCCCEEEEEecCh-HHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhcc
Q psy6348 93 GTELYGKTLAVLGLGR-IGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLIN 171 (333)
Q Consensus 93 g~~l~gktvGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~ 171 (333)
+.++.||++.|||.|. +|+.+|..|...|++|+.++++. .++.+.+++||+|+.+++. .+++.
T Consensus 153 ~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t------------~~l~~~~~~ADIVIsAvg~----p~~i~ 216 (286)
T PRK14175 153 DIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS------------KDMASYLKDADVIVSAVGK----PGLVT 216 (286)
T ss_pred CCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc------------hhHHHHHhhCCEEEECCCC----CcccC
Confidence 4579999999999998 99999999999999999998742 2578889999999999984 34677
Q ss_pred HHHHhccCCCcEEEEccCCc
Q psy6348 172 AEVLKKCKKGVRVVNVARGG 191 (333)
Q Consensus 172 ~~~~~~mk~gailIN~aRg~ 191 (333)
.+. +|+|+++||++-..
T Consensus 217 ~~~---vk~gavVIDvGi~~ 233 (286)
T PRK14175 217 KDV---VKEGAVIIDVGNTP 233 (286)
T ss_pred HHH---cCCCcEEEEcCCCc
Confidence 654 69999999998654
No 127
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=98.22 E-value=4.3e-06 Score=85.25 Aligned_cols=93 Identities=23% Similarity=0.280 Sum_probs=73.5
Q ss_pred cCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHhcCcccc--C--------------------------h
Q psy6348 96 LYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV-SVEDAAKLNIASL--G--------------------------L 146 (333)
Q Consensus 96 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~gv~~~--~--------------------------l 146 (333)
+.+.++.|+|+|.+|...+..++.+|.+|+++|++. ..+.++.+|.+.+ + +
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~ 241 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELF 241 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHH
Confidence 457899999999999999999999999999999876 4456666776542 1 3
Q ss_pred hhhccCCCEEEEec--CCchhhHhhccHHHHhccCCCcEEEEccC
Q psy6348 147 EDIWPLADYITVHT--PLIPQTKNLINAEVLKKCKKGVRVVNVAR 189 (333)
Q Consensus 147 ~ell~~aDvV~l~~--P~t~~t~~li~~~~~~~mk~gailIN~aR 189 (333)
.+.++++|+|+.++ |..+ .-.++.++.++.||+|+++||++-
T Consensus 242 ~e~~~~~DIVI~TalipG~~-aP~Lit~emv~~MKpGsvIVDlA~ 285 (511)
T TIGR00561 242 AAQAKEVDIIITTALIPGKP-APKLITEEMVDSMKAGSVIVDLAA 285 (511)
T ss_pred HHHhCCCCEEEECcccCCCC-CCeeehHHHHhhCCCCCEEEEeee
Confidence 45578899998877 3211 235788999999999999999964
No 128
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=98.21 E-value=3.4e-06 Score=84.32 Aligned_cols=97 Identities=22% Similarity=0.268 Sum_probs=71.4
Q ss_pred ccCCCEEEEEecChHHHHHHHHHhhCC-CEEEEEcCCCCH--HHHHhcCccc---cChhhhccCCCEEEEecCCchhhHh
Q psy6348 95 ELYGKTLAVLGLGRIGREVALRMQAFG-MKVIGFDPMVSV--EDAAKLNIAS---LGLEDIWPLADYITVHTPLIPQTKN 168 (333)
Q Consensus 95 ~l~gktvGIIGlG~IG~~vA~~l~~~G-~~V~~~d~~~~~--~~a~~~gv~~---~~l~ell~~aDvV~l~~P~t~~t~~ 168 (333)
.+.|++++|||.|.||+.+++.|+..| .+|+++++.... +.+++.|... .++.+.+.++|+|+.+++ .+..
T Consensus 177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~aT~---s~~~ 253 (417)
T TIGR01035 177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISSTG---APHP 253 (417)
T ss_pred CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEECCC---CCCc
Confidence 378899999999999999999999999 789999997633 2444455332 256778899999999976 4456
Q ss_pred hccHHHHhccC----CCcEEEEccCCcccc
Q psy6348 169 LINAEVLKKCK----KGVRVVNVARGGIVD 194 (333)
Q Consensus 169 li~~~~~~~mk----~gailIN~aRg~~vd 194 (333)
+++.+.++.+. ...+++|.+...=+|
T Consensus 254 ii~~e~l~~~~~~~~~~~~viDla~Prdid 283 (417)
T TIGR01035 254 IVSKEDVERALRERTRPLFIIDIAVPRDVD 283 (417)
T ss_pred eEcHHHHHHHHhcCCCCeEEEEeCCCCCCC
Confidence 77877776542 234777876544344
No 129
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=98.20 E-value=1.7e-05 Score=75.05 Aligned_cols=107 Identities=13% Similarity=0.112 Sum_probs=74.8
Q ss_pred CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHhcCccc-----------c-ChhhhccCCCEEEEecCCchh
Q psy6348 99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV-SVEDAAKLNIAS-----------L-GLEDIWPLADYITVHTPLIPQ 165 (333)
Q Consensus 99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~gv~~-----------~-~l~ell~~aDvV~l~~P~t~~ 165 (333)
++|+|||.|.||+.+|..|...|.+|..+++.. ..+...+.|+.. . +.+++ +.+|+|++++|. .+
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vila~k~-~~ 78 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVILAVKA-YQ 78 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEEeccc-cc
Confidence 379999999999999999999999999999854 223344445421 1 34454 889999999994 34
Q ss_pred hHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceE
Q psy6348 166 TKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGG 209 (333)
Q Consensus 166 t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~g 209 (333)
+..++ +.....+.+++.+|.+.-| +-.++.+.+.+....+.+
T Consensus 79 ~~~~~-~~l~~~l~~~~~iv~~~nG-~~~~~~l~~~~~~~~i~~ 120 (304)
T PRK06522 79 LPAAL-PSLAPLLGPDTPVLFLQNG-VGHLEELAAYIGPERVLG 120 (304)
T ss_pred HHHHH-HHHhhhcCCCCEEEEecCC-CCcHHHHHHhcCcccEEE
Confidence 45544 3444556778888887776 334566666666555543
No 130
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=98.20 E-value=6.8e-06 Score=79.03 Aligned_cols=93 Identities=24% Similarity=0.246 Sum_probs=65.7
Q ss_pred cCCCEEEEEecChHHHHHHHHHhhCC-CEEEEEcCCCC--HHHHHhcCcccc---ChhhhccCCCEEEEecCCchhhHhh
Q psy6348 96 LYGKTLAVLGLGRIGREVALRMQAFG-MKVIGFDPMVS--VEDAAKLNIASL---GLEDIWPLADYITVHTPLIPQTKNL 169 (333)
Q Consensus 96 l~gktvGIIGlG~IG~~vA~~l~~~G-~~V~~~d~~~~--~~~a~~~gv~~~---~l~ell~~aDvV~l~~P~t~~t~~l 169 (333)
+.|++++|||.|.||+.+++.++..| .+|+++++... .+.+.++|.... ++.+.+.++|+|+.++|... ...+
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~~~~-~~~~ 254 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNEADVVISATGAPH-YAKI 254 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCCCCc-hHHH
Confidence 67999999999999999999999866 57999999763 244566665433 35677889999999999543 3222
Q ss_pred ccHHHHhcc-CCCcEEEEccCC
Q psy6348 170 INAEVLKKC-KKGVRVVNVARG 190 (333)
Q Consensus 170 i~~~~~~~m-k~gailIN~aRg 190 (333)
+ ...++.. +++.++||++..
T Consensus 255 ~-~~~~~~~~~~~~~viDlavP 275 (311)
T cd05213 255 V-ERAMKKRSGKPRLIVDLAVP 275 (311)
T ss_pred H-HHHHhhCCCCCeEEEEeCCC
Confidence 2 2223222 356777777643
No 131
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=98.19 E-value=1.3e-05 Score=75.99 Aligned_cols=107 Identities=14% Similarity=0.105 Sum_probs=75.0
Q ss_pred CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccc--------------cChhhhccCCCEEEEecCCch
Q psy6348 99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIAS--------------LGLEDIWPLADYITVHTPLIP 164 (333)
Q Consensus 99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~--------------~~l~ell~~aDvV~l~~P~t~ 164 (333)
++|+|||.|.||..+|..|...|++|..|++....+...+.|... .+.++..+.+|+|++++|. .
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk~-~ 79 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVRPKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVKA-Y 79 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEecHHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEecc-c
Confidence 379999999999999999999999999999822233334444321 1345566889999999994 3
Q ss_pred hhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCce
Q psy6348 165 QTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCG 208 (333)
Q Consensus 165 ~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~ 208 (333)
.+...+ ++....++++.++|.+.-| +-..+.+.+.+.+.++.
T Consensus 80 ~~~~~~-~~l~~~~~~~~~ii~~~nG-~~~~~~l~~~~~~~~v~ 121 (305)
T PRK12921 80 QLDAAI-PDLKPLVGEDTVIIPLQNG-IGQLEQLEPYFGRERVL 121 (305)
T ss_pred CHHHHH-HHHHhhcCCCCEEEEeeCC-CChHHHHHHhCCcccEE
Confidence 444444 3444556778888877665 45567777777665554
No 132
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=98.18 E-value=4.1e-05 Score=70.47 Aligned_cols=151 Identities=19% Similarity=0.149 Sum_probs=100.3
Q ss_pred ccccCCCEEEEEecChHHHHHHHHHhhCCCE---EEEEcCC----CCH---------HHHHhcCcc-c-cChhhhccCCC
Q psy6348 93 GTELYGKTLAVLGLGRIGREVALRMQAFGMK---VIGFDPM----VSV---------EDAAKLNIA-S-LGLEDIWPLAD 154 (333)
Q Consensus 93 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~---V~~~d~~----~~~---------~~a~~~gv~-~-~~l~ell~~aD 154 (333)
+..+.++++.|+|.|.+|+.+|..|...|++ ++.+|++ ... +.++..+.. . .++.+.++++|
T Consensus 20 g~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~~~~l~~~l~~~d 99 (226)
T cd05311 20 GKKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKTGGTLKEALKGAD 99 (226)
T ss_pred CCCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCcccCCHHHHHhcCC
Confidence 4568899999999999999999999999985 9999997 221 122332211 1 26777888999
Q ss_pred EEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCC-ceEEEeccCCCCCCCCccchhhcCCCc
Q psy6348 155 YITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGH-CGGAALDVFCEEPPKSEQTFELIKHPK 233 (333)
Q Consensus 155 vV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~-i~gaalDV~~~EP~~~~~~~~L~~~pn 233 (333)
+|+.++| .++++.+.++.|+++.++...+. ...|.-+.+|.+.|. +..-+. +.. ..+.-|
T Consensus 100 vlIgaT~-----~G~~~~~~l~~m~~~~ivf~lsn--P~~e~~~~~A~~~ga~i~a~G~-----~~~-------~~Q~nn 160 (226)
T cd05311 100 VFIGVSR-----PGVVKKEMIKKMAKDPIVFALAN--PVPEIWPEEAKEAGADIVATGR-----SDF-------PNQVNN 160 (226)
T ss_pred EEEeCCC-----CCCCCHHHHHhhCCCCEEEEeCC--CCCcCCHHHHHHcCCcEEEeCC-----CCC-------ccccce
Confidence 9999886 57788899999999999998883 334555555555443 333231 111 126779
Q ss_pred EEEccCCCCC-----cHHHHHHHHHHHHHHHHHh
Q psy6348 234 VIVTPHLGAS-----TKEAQIRVAVEIAEQFIAL 262 (333)
Q Consensus 234 vi~TPHi~~~-----t~ea~~~~~~~~~~~i~~~ 262 (333)
+++-|-+|=- ...--+.|...+++.+.++
T Consensus 161 ~~~fPg~~~g~~~~~~~~i~~~m~~~aa~~la~~ 194 (226)
T cd05311 161 VLGFPGIFRGALDVRATKITEEMKLAAAEAIADL 194 (226)
T ss_pred eeecchhhHHHHHcCCcCCCHHHHHHHHHHHHhh
Confidence 9999988621 1112234445555555553
No 133
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=98.12 E-value=5.4e-05 Score=76.93 Aligned_cols=135 Identities=16% Similarity=0.121 Sum_probs=87.4
Q ss_pred CEEEEEecChHHHHHHHHHhhC--CCEEEEEcCCCCHHHHHhcC--------------------cccc-ChhhhccCCCE
Q psy6348 99 KTLAVLGLGRIGREVALRMQAF--GMKVIGFDPMVSVEDAAKLN--------------------IASL-GLEDIWPLADY 155 (333)
Q Consensus 99 ktvGIIGlG~IG~~vA~~l~~~--G~~V~~~d~~~~~~~a~~~g--------------------v~~~-~l~ell~~aDv 155 (333)
++|+|||+|.+|..+|..|... |++|++||.....-.....| .... +.++.+++||+
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~adv 81 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEADI 81 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCCE
Confidence 5799999999999999999866 68999999754221111111 1111 45677899999
Q ss_pred EEEecCCch-----------hhHhhc--cHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEecc---CCCCC
Q psy6348 156 ITVHTPLIP-----------QTKNLI--NAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDV---FCEEP 219 (333)
Q Consensus 156 V~l~~P~t~-----------~t~~li--~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV---~~~EP 219 (333)
+++|+|... +...+. -+..-+.++++.++|.-|.-.+=..+.+...|.+.. .| .|+ |.+|=
T Consensus 82 i~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~-~g--~~f~v~~~PEr 158 (473)
T PLN02353 82 VFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS-KG--INFQILSNPEF 158 (473)
T ss_pred EEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhC-CC--CCeEEEECCCc
Confidence 999997221 111222 244556789999999999977777778888777531 11 232 45553
Q ss_pred CC-CccchhhcCCCcEEE
Q psy6348 220 PK-SEQTFELIKHPKVIV 236 (333)
Q Consensus 220 ~~-~~~~~~L~~~pnvi~ 236 (333)
.. ....+.++..|+|++
T Consensus 159 l~~G~a~~d~~~p~riVi 176 (473)
T PLN02353 159 LAEGTAIEDLFKPDRVLI 176 (473)
T ss_pred cCCCCcccccCCCCEEEE
Confidence 22 112346778888873
No 134
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=98.08 E-value=9.9e-06 Score=81.13 Aligned_cols=92 Identities=22% Similarity=0.333 Sum_probs=67.3
Q ss_pred ccCCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCCCH--HHHHhcCcccc---ChhhhccCCCEEEEecCCchhhHh
Q psy6348 95 ELYGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMVSV--EDAAKLNIASL---GLEDIWPLADYITVHTPLIPQTKN 168 (333)
Q Consensus 95 ~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~--~~a~~~gv~~~---~l~ell~~aDvV~l~~P~t~~t~~ 168 (333)
.+.|++++|||.|.||+.+++.|+..|. +|+++++.... ..+..+|.... ++.+.+.++|+|+.++|. ...
T Consensus 179 ~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVI~aT~s---~~~ 255 (423)
T PRK00045 179 DLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEALAEADIVISSTGA---PHP 255 (423)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCEEEECCCC---CCc
Confidence 3789999999999999999999999998 89999997633 24455554332 456778899999999873 344
Q ss_pred hccHHHHhcc-----CCCcEEEEccC
Q psy6348 169 LINAEVLKKC-----KKGVRVVNVAR 189 (333)
Q Consensus 169 li~~~~~~~m-----k~gailIN~aR 189 (333)
++..+.++.+ +.+.++||.+-
T Consensus 256 ~i~~~~l~~~~~~~~~~~~vviDla~ 281 (423)
T PRK00045 256 IIGKGMVERALKARRHRPLLLVDLAV 281 (423)
T ss_pred EEcHHHHHHHHhhccCCCeEEEEeCC
Confidence 5666666543 24567777754
No 135
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=98.05 E-value=5e-05 Score=71.10 Aligned_cols=126 Identities=19% Similarity=0.188 Sum_probs=78.8
Q ss_pred HHHHHhhCC--CEEEEEcCCC-CHHHHHhcCcccc--ChhhhccCCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEc
Q psy6348 113 VALRMQAFG--MKVIGFDPMV-SVEDAAKLNIASL--GLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNV 187 (333)
Q Consensus 113 vA~~l~~~G--~~V~~~d~~~-~~~~a~~~gv~~~--~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~ 187 (333)
+|+.|+..| .+|++||+.. ..+.+.+.|+... +-.+.++++|+|++|+|. ..+..++ ++....+++|++++++
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~DlvvlavP~-~~~~~~l-~~~~~~~~~~~iv~Dv 78 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTDIEAVEDADLVVLAVPV-SAIEDVL-EEIAPYLKPGAIVTDV 78 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESHHHHGGCCSEEEE-S-H-HHHHHHH-HHHHCGS-TTSEEEE-
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCCHhHhcCCCEEEEcCCH-HHHHHHH-HHhhhhcCCCcEEEEe
Confidence 467777777 8999999977 4455667787543 225788999999999994 3445554 5566779999999999
Q ss_pred cCCcccchHhHHhhhhcCCceEEEec-cCCCCCCC-CccchhhcCCCcEEEccCCC
Q psy6348 188 ARGGIVDENALLDSLKCGHCGGAALD-VFCEEPPK-SEQTFELIKHPKVIVTPHLG 241 (333)
Q Consensus 188 aRg~~vd~~aL~~aL~~g~i~gaalD-V~~~EP~~-~~~~~~L~~~pnvi~TPHi~ 241 (333)
+.-+---.+++.+.+. ......+.. -|.+|-.. ......|+.-.++++||+-.
T Consensus 79 ~SvK~~~~~~~~~~~~-~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~ 133 (258)
T PF02153_consen 79 GSVKAPIVEAMERLLP-EGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGED 133 (258)
T ss_dssp -S-CHHHHHHHHHHHT-SSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTT
T ss_pred CCCCHHHHHHHHHhcC-cccceeecCCCCCCccccchhhcccccCCCeEEEeCCCC
Confidence 8877666666666666 223333333 24443211 00123688889999999866
No 136
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=98.05 E-value=9e-06 Score=71.19 Aligned_cols=95 Identities=19% Similarity=0.239 Sum_probs=67.6
Q ss_pred cccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHHhcCcc---c--------------------c----C
Q psy6348 94 TELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAAKLNIA---S--------------------L----G 145 (333)
Q Consensus 94 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~gv~---~--------------------~----~ 145 (333)
..+...++.|+|.|++|+.-++.++++|++|..+|.+... +.....+.. . . .
T Consensus 16 ~~~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (168)
T PF01262_consen 16 GGVPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESN 95 (168)
T ss_dssp TEE-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHH
T ss_pred CCCCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHH
Confidence 3567789999999999999999999999999999986532 222333221 1 1 3
Q ss_pred hhhhccCCCEEEEecC-CchhhHhhccHHHHhccCCCcEEEEcc
Q psy6348 146 LEDIWPLADYITVHTP-LIPQTKNLINAEVLKKCKKGVRVVNVA 188 (333)
Q Consensus 146 l~ell~~aDvV~l~~P-~t~~t~~li~~~~~~~mk~gailIN~a 188 (333)
+.+.++.+|+|+.++- -....-.++.++.++.||++.+++++|
T Consensus 96 f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis 139 (168)
T PF01262_consen 96 FAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDIS 139 (168)
T ss_dssp HHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETT
T ss_pred HHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEE
Confidence 6678899999986433 244566789999999999999999984
No 137
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=98.03 E-value=2.1e-05 Score=73.60 Aligned_cols=97 Identities=12% Similarity=0.193 Sum_probs=66.0
Q ss_pred CCEEEEEecChHHHHHHHHHhhCC----CEEEEEcCCCCHHHHHhcCccc-cChhhhccCCCEEEEecCCchhhHhhccH
Q psy6348 98 GKTLAVLGLGRIGREVALRMQAFG----MKVIGFDPMVSVEDAAKLNIAS-LGLEDIWPLADYITVHTPLIPQTKNLINA 172 (333)
Q Consensus 98 gktvGIIGlG~IG~~vA~~l~~~G----~~V~~~d~~~~~~~a~~~gv~~-~~l~ell~~aDvV~l~~P~t~~t~~li~~ 172 (333)
..||||||+|+||+++++.+...| -+++++|+.... .++.. .+..+++.++|+|++++| ...+..++.
T Consensus 3 ~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~D~Vilavk-p~~~~~vl~- 75 (260)
T PTZ00431 3 NIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKN-----TPFVYLQSNEELAKTCDIIVLAVK-PDLAGKVLL- 75 (260)
T ss_pred CCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhc-----CCeEEeCChHHHHHhCCEEEEEeC-HHHHHHHHH-
Confidence 468999999999999999998766 259999985421 23333 366778889999999998 445566653
Q ss_pred HHHhccCCCcEEEEccCCcccchHhHHhhhhc
Q psy6348 173 EVLKKCKKGVRVVNVARGGIVDENALLDSLKC 204 (333)
Q Consensus 173 ~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~ 204 (333)
+....++++ .+|.+.-| +..+.+.+.+..
T Consensus 76 ~i~~~l~~~-~iIS~~aG--i~~~~l~~~~~~ 104 (260)
T PTZ00431 76 EIKPYLGSK-LLISICGG--LNLKTLEEMVGV 104 (260)
T ss_pred HHHhhccCC-EEEEEeCC--ccHHHHHHHcCC
Confidence 343455554 55666555 345555555543
No 138
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=98.02 E-value=1.9e-05 Score=80.74 Aligned_cols=94 Identities=21% Similarity=0.255 Sum_probs=72.8
Q ss_pred cCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHhcCcccc--Ch--------------------------
Q psy6348 96 LYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV-SVEDAAKLNIASL--GL-------------------------- 146 (333)
Q Consensus 96 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~gv~~~--~l-------------------------- 146 (333)
..|.+|.|+|.|.+|...+..++.+|.+|+++|++. ..+.++++|.+.. +.
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~ 242 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALF 242 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHH
Confidence 468999999999999999999999999999999987 4567778887632 11
Q ss_pred hhhccCCCEEEEecCCchh-hHhhccHHHHhccCCCcEEEEccC
Q psy6348 147 EDIWPLADYITVHTPLIPQ-TKNLINAEVLKKCKKGVRVVNVAR 189 (333)
Q Consensus 147 ~ell~~aDvV~l~~P~t~~-t~~li~~~~~~~mk~gailIN~aR 189 (333)
.+.++++|+|+.+...... .-.++.++.++.||+|..+++++-
T Consensus 243 ~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 243 AEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 1113579999998753211 224556889999999999999974
No 139
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.00 E-value=2.9e-05 Score=73.74 Aligned_cols=80 Identities=24% Similarity=0.320 Sum_probs=66.5
Q ss_pred ccccCCCEEEEEecCh-HHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhcc
Q psy6348 93 GTELYGKTLAVLGLGR-IGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLIN 171 (333)
Q Consensus 93 g~~l~gktvGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~ 171 (333)
+.++.||++.|||.|. +|+.+|..|...|..|+.++.+. .++.+.+++||+|+.+++. .+++.
T Consensus 154 ~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T------------~~l~~~~~~ADIvi~avG~----p~~v~ 217 (285)
T PRK10792 154 GIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFT------------KNLRHHVRNADLLVVAVGK----PGFIP 217 (285)
T ss_pred CCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCC------------CCHHHHHhhCCEEEEcCCC----ccccc
Confidence 5689999999999999 99999999999999999998642 2578899999999999953 23565
Q ss_pred HHHHhccCCCcEEEEccCCc
Q psy6348 172 AEVLKKCKKGVRVVNVARGG 191 (333)
Q Consensus 172 ~~~~~~mk~gailIN~aRg~ 191 (333)
. +.+|+|+++||++-..
T Consensus 218 ~---~~vk~gavVIDvGin~ 234 (285)
T PRK10792 218 G---EWIKPGAIVIDVGINR 234 (285)
T ss_pred H---HHcCCCcEEEEccccc
Confidence 5 4469999999998543
No 140
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=98.00 E-value=2.2e-05 Score=68.61 Aligned_cols=82 Identities=27% Similarity=0.347 Sum_probs=59.1
Q ss_pred CccccCCCEEEEEecCh-HHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhc
Q psy6348 92 TGTELYGKTLAVLGLGR-IGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLI 170 (333)
Q Consensus 92 ~g~~l~gktvGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li 170 (333)
.+.++.||++.|||-+. +|+.++..|...|+.|..++.+. .++++.+++||+|+.+++. .++|
T Consensus 30 ~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T------------~~l~~~~~~ADIVVsa~G~----~~~i 93 (160)
T PF02882_consen 30 YGIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT------------KNLQEITRRADIVVSAVGK----PNLI 93 (160)
T ss_dssp TT-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS------------SSHHHHHTTSSEEEE-SSS----TT-B
T ss_pred cCCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC------------CcccceeeeccEEeeeecc----cccc
Confidence 35679999999999985 99999999999999999988753 2578888999999999863 4566
Q ss_pred cHHHHhccCCCcEEEEccCCcc
Q psy6348 171 NAEVLKKCKKGVRVVNVARGGI 192 (333)
Q Consensus 171 ~~~~~~~mk~gailIN~aRg~~ 192 (333)
..+ .+|+|+++||++.-..
T Consensus 94 ~~~---~ik~gavVIDvG~~~~ 112 (160)
T PF02882_consen 94 KAD---WIKPGAVVIDVGINYV 112 (160)
T ss_dssp -GG---GS-TTEEEEE--CEEE
T ss_pred ccc---cccCCcEEEecCCccc
Confidence 555 4699999999987654
No 141
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=97.99 E-value=6.1e-05 Score=64.37 Aligned_cols=81 Identities=27% Similarity=0.324 Sum_probs=67.5
Q ss_pred CccccCCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhc
Q psy6348 92 TGTELYGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLI 170 (333)
Q Consensus 92 ~g~~l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li 170 (333)
.+.++.||++.|+|- ..+|+.+|..|...|++|..++.+. .++++.+++||+|+.+++.. ++|
T Consensus 22 ~~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t------------~~l~~~v~~ADIVvsAtg~~----~~i 85 (140)
T cd05212 22 EGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT------------IQLQSKVHDADVVVVGSPKP----EKV 85 (140)
T ss_pred cCCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC------------cCHHHHHhhCCEEEEecCCC----Ccc
Confidence 367899999999998 5689999999999999999998642 25778899999999999853 567
Q ss_pred cHHHHhccCCCcEEEEccCCc
Q psy6348 171 NAEVLKKCKKGVRVVNVARGG 191 (333)
Q Consensus 171 ~~~~~~~mk~gailIN~aRg~ 191 (333)
..+. +|+|++++|++...
T Consensus 86 ~~~~---ikpGa~Vidvg~~~ 103 (140)
T cd05212 86 PTEW---IKPGATVINCSPTK 103 (140)
T ss_pred CHHH---cCCCCEEEEcCCCc
Confidence 6655 69999999997654
No 142
>PLN00203 glutamyl-tRNA reductase
Probab=97.96 E-value=1.7e-05 Score=81.25 Aligned_cols=94 Identities=13% Similarity=0.126 Sum_probs=69.2
Q ss_pred ccCCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCCCH--HHHHhc-Cc--cc---cChhhhccCCCEEEEecCCchh
Q psy6348 95 ELYGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMVSV--EDAAKL-NI--AS---LGLEDIWPLADYITVHTPLIPQ 165 (333)
Q Consensus 95 ~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~--~~a~~~-gv--~~---~~l~ell~~aDvV~l~~P~t~~ 165 (333)
++.+++++|||.|.||+.+++.|...|. +|++++|+... ..+..+ +. .. .++.+.+.++|+|+.++| .
T Consensus 263 ~l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~---s 339 (519)
T PLN00203 263 SHASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTS---S 339 (519)
T ss_pred CCCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccC---C
Confidence 3778999999999999999999999997 79999997633 222333 22 22 256678899999999976 4
Q ss_pred hHhhccHHHHhccCCC-------cEEEEccCCc
Q psy6348 166 TKNLINAEVLKKCKKG-------VRVVNVARGG 191 (333)
Q Consensus 166 t~~li~~~~~~~mk~g-------ailIN~aRg~ 191 (333)
...++.++.++.++++ .+|||.+=..
T Consensus 340 ~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPR 372 (519)
T PLN00203 340 ETPLFLKEHVEALPPASDTVGGKRLFVDISVPR 372 (519)
T ss_pred CCCeeCHHHHHHhhhcccccCCCeEEEEeCCCC
Confidence 4567888888776432 3677776544
No 143
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.95 E-value=3.9e-05 Score=73.00 Aligned_cols=80 Identities=25% Similarity=0.289 Sum_probs=65.5
Q ss_pred ccccCCCEEEEEecCh-HHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhcc
Q psy6348 93 GTELYGKTLAVLGLGR-IGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLIN 171 (333)
Q Consensus 93 g~~l~gktvGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~ 171 (333)
+.++.||++.|||.|. +|+++|..|...|.+|..+++.. .++.+.+++||+|+.+++. + +++.
T Consensus 154 ~i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t------------~~L~~~~~~aDIvI~AtG~-~---~~v~ 217 (283)
T PRK14192 154 NIELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSRT------------QNLPELVKQADIIVGAVGK-P---ELIK 217 (283)
T ss_pred CCCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCc------------hhHHHHhccCCEEEEccCC-C---CcCC
Confidence 5689999999999998 99999999999999999998721 2466777999999999962 2 2566
Q ss_pred HHHHhccCCCcEEEEccCCc
Q psy6348 172 AEVLKKCKKGVRVVNVARGG 191 (333)
Q Consensus 172 ~~~~~~mk~gailIN~aRg~ 191 (333)
.+. +|+|++++|++-..
T Consensus 218 ~~~---lk~gavViDvg~n~ 234 (283)
T PRK14192 218 KDW---IKQGAVVVDAGFHP 234 (283)
T ss_pred HHH---cCCCCEEEEEEEee
Confidence 554 79999999997543
No 144
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=97.95 E-value=2.6e-05 Score=75.64 Aligned_cols=86 Identities=24% Similarity=0.269 Sum_probs=63.3
Q ss_pred EEEEecChHHHHHHHHHhh-CCCEEEEEcC-CCCH--HHHHhcCcc------------------cc-ChhhhccCCCEEE
Q psy6348 101 LAVLGLGRIGREVALRMQA-FGMKVIGFDP-MVSV--EDAAKLNIA------------------SL-GLEDIWPLADYIT 157 (333)
Q Consensus 101 vGIIGlG~IG~~vA~~l~~-~G~~V~~~d~-~~~~--~~a~~~gv~------------------~~-~l~ell~~aDvV~ 157 (333)
|||+|||+||+.+++.+.. -+++|++... .+.. ..+..+|+. .. ++++++.++|+|+
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiVv 80 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIVV 80 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEEE
Confidence 6999999999999998764 5789887643 2221 222323321 11 5888999999999
Q ss_pred EecCCchhhHhhccHHHHhccCCCcEEEEccC
Q psy6348 158 VHTPLIPQTKNLINAEVLKKCKKGVRVVNVAR 189 (333)
Q Consensus 158 l~~P~t~~t~~li~~~~~~~mk~gailIN~aR 189 (333)
.|+| .+.+..+.+.+..|+.+++|+..--
T Consensus 81 e~Tp---~~~~~~na~~~~~~GakaVl~~~p~ 109 (333)
T TIGR01546 81 DATP---GGIGAKNKPLYEKAGVKAIFQGGEK 109 (333)
T ss_pred ECCC---CCCChhhHHHHHhCCcCEEEECCCC
Confidence 9976 5677889999999999999987643
No 145
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.92 E-value=3.2e-05 Score=73.42 Aligned_cols=79 Identities=24% Similarity=0.317 Sum_probs=66.2
Q ss_pred ccccCCCEEEEEecCh-HHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhcc
Q psy6348 93 GTELYGKTLAVLGLGR-IGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLIN 171 (333)
Q Consensus 93 g~~l~gktvGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~ 171 (333)
+.++.||++.|||.|. +|+.+|..|...|+.|..++... -++.+..++||+|+.++.. .+++.
T Consensus 159 ~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T------------~~l~~~~~~ADIvv~AvG~----p~~i~ 222 (287)
T PRK14176 159 GVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFT------------DDLKKYTLDADILVVATGV----KHLIK 222 (287)
T ss_pred CCCCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEeccC------------CCHHHHHhhCCEEEEccCC----ccccC
Confidence 5679999999999999 99999999999999999998532 2578888999999998753 34676
Q ss_pred HHHHhccCCCcEEEEccCC
Q psy6348 172 AEVLKKCKKGVRVVNVARG 190 (333)
Q Consensus 172 ~~~~~~mk~gailIN~aRg 190 (333)
.+ .+|+|+++||++-.
T Consensus 223 ~~---~vk~gavVIDvGin 238 (287)
T PRK14176 223 AD---MVKEGAVIFDVGIT 238 (287)
T ss_pred HH---HcCCCcEEEEeccc
Confidence 55 47999999999854
No 146
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.91 E-value=3e-05 Score=73.35 Aligned_cols=80 Identities=20% Similarity=0.240 Sum_probs=68.1
Q ss_pred ccccCCCEEEEEecC-hHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhcc
Q psy6348 93 GTELYGKTLAVLGLG-RIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLIN 171 (333)
Q Consensus 93 g~~l~gktvGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~ 171 (333)
+.++.||++.|+|.+ .+|+.+|..+..+|..|..++.+. .++.+.+++||+|+.+++.. +++.
T Consensus 147 ~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t------------~~L~~~~~~ADIvI~Avgk~----~lv~ 210 (279)
T PRK14178 147 KISIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSKT------------ENLKAELRQADILVSAAGKA----GFIT 210 (279)
T ss_pred CCCCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecCh------------hHHHHHHhhCCEEEECCCcc----cccC
Confidence 568999999999999 999999999999999999987632 25788899999999999732 6777
Q ss_pred HHHHhccCCCcEEEEccCCc
Q psy6348 172 AEVLKKCKKGVRVVNVARGG 191 (333)
Q Consensus 172 ~~~~~~mk~gailIN~aRg~ 191 (333)
++. +|+|+++||++-..
T Consensus 211 ~~~---vk~GavVIDVgi~~ 227 (279)
T PRK14178 211 PDM---VKPGATVIDVGINQ 227 (279)
T ss_pred HHH---cCCCcEEEEeeccc
Confidence 776 49999999998554
No 147
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=97.90 E-value=0.00013 Score=69.96 Aligned_cols=110 Identities=16% Similarity=0.162 Sum_probs=76.4
Q ss_pred CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccc--------------cChhhhccCCCEEEEecCCch
Q psy6348 99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIAS--------------LGLEDIWPLADYITVHTPLIP 164 (333)
Q Consensus 99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~--------------~~l~ell~~aDvV~l~~P~t~ 164 (333)
++|+|||.|.||..+|.+|...|.+|..+.+.. .+...+.|+.. .+..+....+|+|++++|..
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK~~- 83 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD-YEAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWVLVGLKTT- 83 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC-HHHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEEEEEecCC-
Confidence 589999999999999999999999999998865 33333434321 11223467899999999844
Q ss_pred hhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEe
Q psy6348 165 QTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAAL 212 (333)
Q Consensus 165 ~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaal 212 (333)
++...+ ......++++..++...-| +-.++.+.+.+...++.++..
T Consensus 84 ~~~~~~-~~l~~~~~~~~~iv~lqNG-~~~~e~l~~~~~~~~v~~g~~ 129 (313)
T PRK06249 84 ANALLA-PLIPQVAAPDAKVLLLQNG-LGVEEQLREILPAEHLLGGLC 129 (313)
T ss_pred ChHhHH-HHHhhhcCCCCEEEEecCC-CCcHHHHHHHCCCCcEEEEee
Confidence 344333 3344556788888877554 556777888887767665433
No 148
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=97.89 E-value=0.00014 Score=77.53 Aligned_cols=115 Identities=21% Similarity=0.195 Sum_probs=84.6
Q ss_pred CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHH-----------HhcC-------------cccc-ChhhhccC
Q psy6348 99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDA-----------AKLN-------------IASL-GLEDIWPL 152 (333)
Q Consensus 99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a-----------~~~g-------------v~~~-~l~ell~~ 152 (333)
++|+|||.|.||..+|..+...|++|+.||+.... +.+ .+.| ++.. ++ +.+++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 392 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDY-AGFER 392 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence 68999999999999999999999999999987522 111 0111 1111 34 45799
Q ss_pred CCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCC
Q psy6348 153 ADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCE 217 (333)
Q Consensus 153 aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~ 217 (333)
||+|+=++|...+.+.-+-.+.-+.++++++|...+.+ +....|.+++.. .=+-.++..|.+
T Consensus 393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSs--l~i~~la~~~~~-p~r~~g~Hff~P 454 (715)
T PRK11730 393 VDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTST--ISISLLAKALKR-PENFCGMHFFNP 454 (715)
T ss_pred CCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCC--CCHHHHHhhcCC-CccEEEEecCCc
Confidence 99999999999998888888888889999988765544 555667777753 333467777754
No 149
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.89 E-value=6e-05 Score=72.67 Aligned_cols=94 Identities=19% Similarity=0.261 Sum_probs=69.0
Q ss_pred CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHHh-------c-Cc------cc-cChhhhccCCCEEEEecCC
Q psy6348 99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAAK-------L-NI------AS-LGLEDIWPLADYITVHTPL 162 (333)
Q Consensus 99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~-------~-gv------~~-~~l~ell~~aDvV~l~~P~ 162 (333)
++|+|+|.|.+|.++|..|...|.+|..|.+.... +.... + |+ .. .++.++++.||+|++.+|
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avP- 80 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVP- 80 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECC-
Confidence 58999999999999999999999999999875421 11111 1 22 11 268899999999999999
Q ss_pred chhhHhhccHHHHhccCCCcEEEEccCCcccc
Q psy6348 163 IPQTKNLINAEVLKKCKKGVRVVNVARGGIVD 194 (333)
Q Consensus 163 t~~t~~li~~~~~~~mk~gailIN~aRg~~vd 194 (333)
+...+.++. +....+++++.+|+++-|=-.+
T Consensus 81 s~~~r~v~~-~l~~~l~~~~~iv~~sKGie~~ 111 (329)
T COG0240 81 SQALREVLR-QLKPLLLKDAIIVSATKGLEPE 111 (329)
T ss_pred hHHHHHHHH-HHhhhccCCCeEEEEeccccCC
Confidence 445555543 3335678999999999874443
No 150
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.88 E-value=4e-05 Score=72.77 Aligned_cols=80 Identities=26% Similarity=0.330 Sum_probs=67.0
Q ss_pred ccccCCCEEEEEecC-hHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhcc
Q psy6348 93 GTELYGKTLAVLGLG-RIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLIN 171 (333)
Q Consensus 93 g~~l~gktvGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~ 171 (333)
+.++.||++.|||-| .+|+.+|..|...|+.|..++.+. .++.+.+++||+|+.+++. .+++.
T Consensus 152 ~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t------------~~l~~~~~~ADIvV~AvG~----p~~i~ 215 (285)
T PRK14191 152 HIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILT------------KDLSFYTQNADIVCVGVGK----PDLIK 215 (285)
T ss_pred CCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCc------------HHHHHHHHhCCEEEEecCC----CCcCC
Confidence 568999999999999 999999999999999999986532 1367889999999999963 45677
Q ss_pred HHHHhccCCCcEEEEccCCc
Q psy6348 172 AEVLKKCKKGVRVVNVARGG 191 (333)
Q Consensus 172 ~~~~~~mk~gailIN~aRg~ 191 (333)
.+.+ |+|+++||++-..
T Consensus 216 ~~~v---k~GavVIDvGi~~ 232 (285)
T PRK14191 216 ASMV---KKGAVVVDIGINR 232 (285)
T ss_pred HHHc---CCCcEEEEeeccc
Confidence 6654 9999999998654
No 151
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=97.88 E-value=8.2e-05 Score=66.77 Aligned_cols=97 Identities=23% Similarity=0.323 Sum_probs=68.6
Q ss_pred ccccCCCccccCCCEEEEEecCh-HHHHHHHHHhhCCCEEEEEcCCCCHHHH--HhcCccc---cC----hhhhccCCCE
Q psy6348 86 WDRKLYTGTELYGKTLAVLGLGR-IGREVALRMQAFGMKVIGFDPMVSVEDA--AKLNIAS---LG----LEDIWPLADY 155 (333)
Q Consensus 86 w~~~~~~g~~l~gktvGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a--~~~gv~~---~~----l~ell~~aDv 155 (333)
|++....+.++.||++.|||-+. +|+.+|..|...|+.|+.+|...-.... ....-.. .+ +.+.+++||+
T Consensus 50 ~~~~~~~~~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~~~~~~~~hs~t~~~~~~~~l~~~~~~ADI 129 (197)
T cd01079 50 YNKILPYGNRLYGKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMTLDCLSQSDV 129 (197)
T ss_pred cccccccCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccccccccccccccccccchhhHHHHHhhhCCE
Confidence 33333447899999999999964 7999999999999999999742211000 0000000 12 6789999999
Q ss_pred EEEecCCchhhHhh-ccHHHHhccCCCcEEEEccC
Q psy6348 156 ITVHTPLIPQTKNL-INAEVLKKCKKGVRVVNVAR 189 (333)
Q Consensus 156 V~l~~P~t~~t~~l-i~~~~~~~mk~gailIN~aR 189 (333)
|+.+++. .++ +..+. +|+|+++||++-
T Consensus 130 VIsAvG~----~~~~i~~d~---ik~GavVIDVGi 157 (197)
T cd01079 130 VITGVPS----PNYKVPTEL---LKDGAICINFAS 157 (197)
T ss_pred EEEccCC----CCCccCHHH---cCCCcEEEEcCC
Confidence 9999984 344 66655 589999999973
No 152
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=97.86 E-value=6e-05 Score=71.30 Aligned_cols=71 Identities=27% Similarity=0.304 Sum_probs=52.9
Q ss_pred ccccCCCEEEEEecChHHHHHHHHHhhCC-CEEEEEcCCCCH--HHHHhcC----ccc-cChhhhccCCCEEEEecCCc
Q psy6348 93 GTELYGKTLAVLGLGRIGREVALRMQAFG-MKVIGFDPMVSV--EDAAKLN----IAS-LGLEDIWPLADYITVHTPLI 163 (333)
Q Consensus 93 g~~l~gktvGIIGlG~IG~~vA~~l~~~G-~~V~~~d~~~~~--~~a~~~g----v~~-~~l~ell~~aDvV~l~~P~t 163 (333)
+..+.++++.|+|.|.+|+.++..|...| .+|++++|+... +.++..+ +.. .++.+.+.++|+|+.++|..
T Consensus 118 ~~~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivInaTp~g 196 (278)
T PRK00258 118 GVDLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAELDLELQEELADFDLIINATSAG 196 (278)
T ss_pred CCCCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceeecccchhccccCCEEEECCcCC
Confidence 45688999999999999999999999999 699999997532 1222222 111 13456778899999999853
No 153
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=97.85 E-value=0.00017 Score=76.64 Aligned_cols=115 Identities=15% Similarity=0.092 Sum_probs=83.0
Q ss_pred CEEEEEecChHHHHHHHHHh-hCCCEEEEEcCCCCH-HHH-----------HhcC-------------cccc-Chhhhcc
Q psy6348 99 KTLAVLGLGRIGREVALRMQ-AFGMKVIGFDPMVSV-EDA-----------AKLN-------------IASL-GLEDIWP 151 (333)
Q Consensus 99 ktvGIIGlG~IG~~vA~~l~-~~G~~V~~~d~~~~~-~~a-----------~~~g-------------v~~~-~l~ell~ 151 (333)
++|+|||.|.||+.+|..+. ..|++|+.||+.... +.+ .+.| ++.. ++ +.++
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 383 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDY-RGFK 383 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCCh-HHhc
Confidence 58999999999999999887 589999999987521 111 0111 1122 34 4578
Q ss_pred CCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCC
Q psy6348 152 LADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCE 217 (333)
Q Consensus 152 ~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~ 217 (333)
+||+|+=++|...+.+.-+-.+.-+.++++++|...+.+ +...+|.++++. .=+-.++..|.+
T Consensus 384 ~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~--l~i~~la~~~~~-p~r~~g~HffnP 446 (699)
T TIGR02440 384 DVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSS--LPIGQIAAAASR-PENVIGLHYFSP 446 (699)
T ss_pred cCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCC--CCHHHHHHhcCC-cccEEEEecCCc
Confidence 999999999999998888878887889999888765544 455666777643 223467777754
No 154
>PRK06141 ornithine cyclodeaminase; Validated
Probab=97.85 E-value=6.2e-05 Score=72.51 Aligned_cols=97 Identities=24% Similarity=0.165 Sum_probs=64.1
Q ss_pred CCCEEEEEecChHHHHHHHHHhh-CC-CEEEEEcCCCCH--HHHHhc---C--ccc-cChhhhccCCCEEEEecCCchhh
Q psy6348 97 YGKTLAVLGLGRIGREVALRMQA-FG-MKVIGFDPMVSV--EDAAKL---N--IAS-LGLEDIWPLADYITVHTPLIPQT 166 (333)
Q Consensus 97 ~gktvGIIGlG~IG~~vA~~l~~-~G-~~V~~~d~~~~~--~~a~~~---g--v~~-~~l~ell~~aDvV~l~~P~t~~t 166 (333)
..++++|||.|.+|+.+++.+.. ++ .+|.+|+|+... +.+.+. | +.. .++++++++||+|+.++|..
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s~--- 200 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLST--- 200 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCCC---
Confidence 46899999999999999975543 44 689999997632 222222 4 333 37888999999998888743
Q ss_pred HhhccHHHHhccCCCcEEEEccCCcccchHhHHh
Q psy6348 167 KNLINAEVLKKCKKGVRVVNVARGGIVDENALLD 200 (333)
Q Consensus 167 ~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~ 200 (333)
..++..+ .+++|+ +||+.-.......++-.
T Consensus 201 ~pvl~~~---~l~~g~-~i~~ig~~~~~~~El~~ 230 (314)
T PRK06141 201 EPLVRGE---WLKPGT-HLDLVGNFTPDMRECDD 230 (314)
T ss_pred CCEecHH---HcCCCC-EEEeeCCCCcccccCCH
Confidence 4556553 468998 45543333333333333
No 155
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=97.84 E-value=7.6e-05 Score=68.77 Aligned_cols=115 Identities=19% Similarity=0.232 Sum_probs=75.3
Q ss_pred cccCCCEEEEEecChHHHHHHHHHhhCCCEEEEE-cC-------CC-CHHHH----HhcC-------ccccChhhhc-cC
Q psy6348 94 TELYGKTLAVLGLGRIGREVALRMQAFGMKVIGF-DP-------MV-SVEDA----AKLN-------IASLGLEDIW-PL 152 (333)
Q Consensus 94 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~-d~-------~~-~~~~a----~~~g-------v~~~~l~ell-~~ 152 (333)
.++.|+++.|.|+|.+|+.+|+.|..+|++|++. |. .- +.+.. ++.| ....+.++++ .+
T Consensus 27 ~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~~~~~i~~~~ 106 (227)
T cd01076 27 IGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERITNEELLELD 106 (227)
T ss_pred CCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceecCCccceeec
Confidence 5689999999999999999999999999999954 33 11 22221 1222 1223344443 36
Q ss_pred CCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCC
Q psy6348 153 ADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCE 217 (333)
Q Consensus 153 aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~ 217 (333)
||+++-|.+ .+.++.+...+++ +.+|--+....+. ....+.|+++.+. ++=|..-+
T Consensus 107 ~Dvlip~a~-----~~~i~~~~~~~l~--a~~I~egAN~~~t-~~a~~~L~~rGi~-~~PD~~aN 162 (227)
T cd01076 107 CDILIPAAL-----ENQITADNADRIK--AKIIVEAANGPTT-PEADEILHERGVL-VVPDILAN 162 (227)
T ss_pred ccEEEecCc-----cCccCHHHHhhce--eeEEEeCCCCCCC-HHHHHHHHHCCCE-EEChHHhc
Confidence 899998875 5667788777776 4444444444444 5566777777775 55555433
No 156
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=97.82 E-value=0.00022 Score=75.96 Aligned_cols=115 Identities=18% Similarity=0.173 Sum_probs=84.1
Q ss_pred CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHH-----------hcC-------------cccc-ChhhhccC
Q psy6348 99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAA-----------KLN-------------IASL-GLEDIWPL 152 (333)
Q Consensus 99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~-----------~~g-------------v~~~-~l~ell~~ 152 (333)
++|+|||.|.||..+|..+...|++|+.||+.... +.+. +.| ++.. ++ +.+++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 392 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSY-AGFDN 392 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence 58999999999999999999999999999987522 1110 111 1111 33 34799
Q ss_pred CCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCC
Q psy6348 153 ADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCE 217 (333)
Q Consensus 153 aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~ 217 (333)
||+|+=++|...+.+.-+-.+.-+.++++++|-..+.+ ++..+|..+++. .=+-.++..|.+
T Consensus 393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~--l~i~~ia~~~~~-p~r~ig~Hff~P 454 (714)
T TIGR02437 393 VDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTST--ISISLLAKALKR-PENFCGMHFFNP 454 (714)
T ss_pred CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHhhcCC-cccEEEEecCCC
Confidence 99999999998888888878887889999998766544 556667777653 333467777754
No 157
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=97.81 E-value=0.0001 Score=71.89 Aligned_cols=90 Identities=18% Similarity=0.142 Sum_probs=65.1
Q ss_pred EEEEEecChHHHHHHHHHhhCC--------CEEEEEcCCC---CHHHHHh----------c-Ccc------c-cChhhhc
Q psy6348 100 TLAVLGLGRIGREVALRMQAFG--------MKVIGFDPMV---SVEDAAK----------L-NIA------S-LGLEDIW 150 (333)
Q Consensus 100 tvGIIGlG~IG~~vA~~l~~~G--------~~V~~~d~~~---~~~~a~~----------~-gv~------~-~~l~ell 150 (333)
+|+|||.|++|.++|..+...| .+|..|.+.. ..+..+. + |+. . .++++++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal 80 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA 80 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence 5899999999999999998777 9999998732 1111111 0 221 1 2688999
Q ss_pred cCCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCc
Q psy6348 151 PLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGG 191 (333)
Q Consensus 151 ~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~ 191 (333)
++||+|++++|. ...+.++ .+.-..++++..+|+++-|=
T Consensus 81 ~~ADiIIlAVPs-~~i~~vl-~~l~~~l~~~~~iVs~tKGi 119 (342)
T TIGR03376 81 KGADILVFVIPH-QFLEGIC-KQLKGHVKPNARAISCIKGL 119 (342)
T ss_pred hcCCEEEEECCh-HHHHHHH-HHHHhhcCCCCEEEEEeCCc
Confidence 999999999993 4444443 44555678899999999884
No 158
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=97.81 E-value=3.6e-05 Score=62.05 Aligned_cols=86 Identities=24% Similarity=0.223 Sum_probs=59.1
Q ss_pred ccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccc--cChhhhccCCCEEEEecCCchhhHhhccH
Q psy6348 95 ELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIAS--LGLEDIWPLADYITVHTPLIPQTKNLINA 172 (333)
Q Consensus 95 ~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~--~~l~ell~~aDvV~l~~P~t~~t~~li~~ 172 (333)
.++|+++.|||.|.+|..=++.|...|.+|++++|.. +.. +..++. ..+++.+.++|+|+.+++... +++
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~--~~~-~~~i~~~~~~~~~~l~~~~lV~~at~d~~-----~n~ 75 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI--EFS-EGLIQLIRREFEEDLDGADLVFAATDDPE-----LNE 75 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE--HHH-HTSCEEEESS-GGGCTTESEEEE-SS-HH-----HHH
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch--hhh-hhHHHHHhhhHHHHHhhheEEEecCCCHH-----HHH
Confidence 5889999999999999999999999999999999975 111 122222 256677899999998886422 334
Q ss_pred HHHhccCCCcEEEEcc
Q psy6348 173 EVLKKCKKGVRVVNVA 188 (333)
Q Consensus 173 ~~~~~mk~gailIN~a 188 (333)
......+.--+++|++
T Consensus 76 ~i~~~a~~~~i~vn~~ 91 (103)
T PF13241_consen 76 AIYADARARGILVNVV 91 (103)
T ss_dssp HHHHHHHHTTSEEEET
T ss_pred HHHHHHhhCCEEEEEC
Confidence 4445555555788874
No 159
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=97.80 E-value=0.00021 Score=76.38 Aligned_cols=115 Identities=18% Similarity=0.115 Sum_probs=84.5
Q ss_pred CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHH-----------HhcC-------------ccc-cChhhhccC
Q psy6348 99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDA-----------AKLN-------------IAS-LGLEDIWPL 152 (333)
Q Consensus 99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a-----------~~~g-------------v~~-~~l~ell~~ 152 (333)
++|+|||.|.||..+|..+...|++|+.||+.... +.+ .+.| ++. .++ +.+++
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 414 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDY-SGFKN 414 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCH-HHhcc
Confidence 68999999999999999999999999999987522 111 0111 111 134 35789
Q ss_pred CCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCC
Q psy6348 153 ADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCE 217 (333)
Q Consensus 153 aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~ 217 (333)
||+|+=++|...+.+.-+-.+.-+.++++++|...+.+ ++..+|.++++.- =+-.++..|.+
T Consensus 415 aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSs--l~i~~la~~~~~p-~r~ig~Hff~P 476 (737)
T TIGR02441 415 ADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSA--LPIKDIAAVSSRP-EKVIGMHYFSP 476 (737)
T ss_pred CCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCC--CCHHHHHhhcCCc-cceEEEeccCC
Confidence 99999999999998888888888889999988754333 5666777776542 33478887754
No 160
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.79 E-value=0.00015 Score=71.44 Aligned_cols=94 Identities=17% Similarity=0.205 Sum_probs=65.1
Q ss_pred CEEEEEecChHHHHHHHHHhhCC-------CEEEEEcCCCC------HHHHHhc--------Ccc------c-cChhhhc
Q psy6348 99 KTLAVLGLGRIGREVALRMQAFG-------MKVIGFDPMVS------VEDAAKL--------NIA------S-LGLEDIW 150 (333)
Q Consensus 99 ktvGIIGlG~IG~~vA~~l~~~G-------~~V~~~d~~~~------~~~a~~~--------gv~------~-~~l~ell 150 (333)
++|+|||.|.+|.++|..+...| .+|..|.+... .+...+. |+. . .++++++
T Consensus 12 ~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~eav 91 (365)
T PTZ00345 12 LKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKEAV 91 (365)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHHHH
Confidence 58999999999999999998665 78988876542 1111111 221 1 2678899
Q ss_pred cCCCEEEEecCCchhhHhhccHHHHh--ccCCCcEEEEccCCcccc
Q psy6348 151 PLADYITVHTPLIPQTKNLINAEVLK--KCKKGVRVVNVARGGIVD 194 (333)
Q Consensus 151 ~~aDvV~l~~P~t~~t~~li~~~~~~--~mk~gailIN~aRg~~vd 194 (333)
+.||+|++++|. ...+.++ ++.-. .+++++++|+++-|=-.+
T Consensus 92 ~~aDiIvlAVPs-q~l~~vl-~~l~~~~~l~~~~~iIS~aKGIe~~ 135 (365)
T PTZ00345 92 EDADLLIFVIPH-QFLESVL-SQIKENNNLKKHARAISLTKGIIVE 135 (365)
T ss_pred hcCCEEEEEcCh-HHHHHHH-HHhccccccCCCCEEEEEeCCcccC
Confidence 999999999993 3444444 33333 567788999998874433
No 161
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=97.75 E-value=0.00054 Score=64.14 Aligned_cols=137 Identities=18% Similarity=0.148 Sum_probs=88.1
Q ss_pred CchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEE-c-----
Q psy6348 55 NFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGF-D----- 128 (333)
Q Consensus 55 n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~-d----- 128 (333)
.+.+++--++..+..++++ .+.++.|+|+.|-|||++|+.+|+.|..+|++|++. |
T Consensus 13 R~~aTg~Gv~~~~~~~~~~------------------~~~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~i 74 (254)
T cd05313 13 RPEATGYGLVYFVEEMLKD------------------RNETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYV 74 (254)
T ss_pred CCchhHHHHHHHHHHHHHh------------------cCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCceE
Confidence 4456665555555555443 246789999999999999999999999999999953 3
Q ss_pred --CCC-CHHHH------H-hc------------CccccChhhhc-cCCCEEEEecCCchhhHhhccHHHHhccC-CCc-E
Q psy6348 129 --PMV-SVEDA------A-KL------------NIASLGLEDIW-PLADYITVHTPLIPQTKNLINAEVLKKCK-KGV-R 183 (333)
Q Consensus 129 --~~~-~~~~a------~-~~------------gv~~~~l~ell-~~aDvV~l~~P~t~~t~~li~~~~~~~mk-~ga-i 183 (333)
+.- +.+.. + +. +.+..+.++++ .+||+++-| .+.+.|+.+..+.++ +++ +
T Consensus 75 ~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~~~~~~~~~~~DIliPc-----Al~~~I~~~na~~i~~~~ak~ 149 (254)
T cd05313 75 YDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKYFEGKKPWEVPCDIAFPC-----ATQNEVDAEDAKLLVKNGCKY 149 (254)
T ss_pred ECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEeCCcchhcCCCcEEEec-----cccccCCHHHHHHHHHcCCEE
Confidence 321 11111 0 11 13334555554 469999987 467889999888884 244 4
Q ss_pred EEEccCCcccchHhHHhhhhcCCceEEEeccCCC
Q psy6348 184 VVNVARGGIVDENALLDSLKCGHCGGAALDVFCE 217 (333)
Q Consensus 184 lIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~ 217 (333)
++-.+-+.+ .. +-.+.|.+..+. ++=|+..+
T Consensus 150 I~EgAN~p~-t~-~a~~~L~~rGI~-vvPD~laN 180 (254)
T cd05313 150 VAEGANMPC-TA-EAIEVFRQAGVL-FAPGKAAN 180 (254)
T ss_pred EEeCCCCCC-CH-HHHHHHHHCCcE-EECchhhc
Confidence 455555555 44 455777777765 55565443
No 162
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=97.75 E-value=9e-05 Score=60.06 Aligned_cols=78 Identities=21% Similarity=0.219 Sum_probs=59.0
Q ss_pred HHHHHHHHHhhCCCEEEEEcCCCCHHHHHh----cCcccc-ChhhhccCCCEEEEecCCchhhHhhccHHHHhccCCCcE
Q psy6348 109 IGREVALRMQAFGMKVIGFDPMVSVEDAAK----LNIASL-GLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVR 183 (333)
Q Consensus 109 IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~----~gv~~~-~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gai 183 (333)
-+..+++.|+..|++|.+|||+.+...... .+++.. ++++.++.+|+|+++++ .++-+.+-..+....|+++.+
T Consensus 18 p~~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vvl~t~-h~~f~~l~~~~~~~~~~~~~~ 96 (106)
T PF03720_consen 18 PALELIEELKERGAEVSVYDPYVDEEEIKELGKLEGVEVCDDLEEALKGADAVVLATD-HDEFRELDWEEIAKLMRKPPV 96 (106)
T ss_dssp HHHHHHHHHHHTT-EEEEE-TTSHHHHHHHHCHHHCEEEESSHHHHHTTESEEEESS---GGGGCCGHHHHHHHSCSSEE
T ss_pred HHHHHHHHHHHCCCEEEEECCccChHHHHhhCCccceEEecCHHHHhcCCCEEEEEec-CHHHhccCHHHHHHhcCCCCE
Confidence 356789999999999999999997666655 467665 78999999999999998 455555444556677889999
Q ss_pred EEEc
Q psy6348 184 VVNV 187 (333)
Q Consensus 184 lIN~ 187 (333)
||++
T Consensus 97 iiD~ 100 (106)
T PF03720_consen 97 IIDG 100 (106)
T ss_dssp EEES
T ss_pred EEEC
Confidence 9987
No 163
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=97.75 E-value=0.00042 Score=66.57 Aligned_cols=119 Identities=21% Similarity=0.156 Sum_probs=85.2
Q ss_pred CCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHH-----------HhcCc-c---------cc-Chhh--hccC
Q psy6348 98 GKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDA-----------AKLNI-A---------SL-GLED--IWPL 152 (333)
Q Consensus 98 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a-----------~~~gv-~---------~~-~l~e--ll~~ 152 (333)
-+++||||.|.||+.+|..+..-|++|..+|++... +.+ .+.|. . .. ...+ .+++
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~~l~~ 82 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLAALKD 82 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchhHhcc
Confidence 479999999999999999998877999999997421 111 11121 0 11 1122 6899
Q ss_pred CCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCC
Q psy6348 153 ADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEP 219 (333)
Q Consensus 153 aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP 219 (333)
||+|+=++|-+.+.+.-+-++.=+..+++++|-.-.++ +.-.++.++++ .+=+..++..|.+-|
T Consensus 83 ~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSs--l~it~ia~~~~-rper~iG~HFfNP~~ 146 (307)
T COG1250 83 ADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSS--LSITELAEALK-RPERFIGLHFFNPVP 146 (307)
T ss_pred CCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCC--CCHHHHHHHhC-CchhEEEEeccCCCC
Confidence 99999999999898888878887888999998765544 45566777774 333457887776543
No 164
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.73 E-value=0.00011 Score=69.54 Aligned_cols=80 Identities=21% Similarity=0.260 Sum_probs=66.5
Q ss_pred ccccCCCEEEEEecC-hHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhcc
Q psy6348 93 GTELYGKTLAVLGLG-RIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLIN 171 (333)
Q Consensus 93 g~~l~gktvGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~ 171 (333)
+.++.||++.|||-+ .+|+.+|..|...|..|..++.+. .++.+..++||+|+.++.. .+++.
T Consensus 152 ~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T------------~~l~~~~~~ADIvV~AvGk----p~~i~ 215 (281)
T PRK14183 152 EIDVKGKDVCVVGASNIVGKPMAALLLNANATVDICHIFT------------KDLKAHTKKADIVIVGVGK----PNLIT 215 (281)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC------------cCHHHHHhhCCEEEEecCc----ccccC
Confidence 568999999999998 899999999999999999886532 2467889999999999963 45677
Q ss_pred HHHHhccCCCcEEEEccCCc
Q psy6348 172 AEVLKKCKKGVRVVNVARGG 191 (333)
Q Consensus 172 ~~~~~~mk~gailIN~aRg~ 191 (333)
.+. .|+|+++||++-..
T Consensus 216 ~~~---vk~gavvIDvGin~ 232 (281)
T PRK14183 216 EDM---VKEGAIVIDIGINR 232 (281)
T ss_pred HHH---cCCCcEEEEeeccc
Confidence 665 58999999998544
No 165
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=97.72 E-value=0.0004 Score=74.06 Aligned_cols=115 Identities=18% Similarity=0.104 Sum_probs=84.0
Q ss_pred CEEEEEecChHHHHHHHHHh-hCCCEEEEEcCCCCH-HHH-----------HhcC-------------cccc-Chhhhcc
Q psy6348 99 KTLAVLGLGRIGREVALRMQ-AFGMKVIGFDPMVSV-EDA-----------AKLN-------------IASL-GLEDIWP 151 (333)
Q Consensus 99 ktvGIIGlG~IG~~vA~~l~-~~G~~V~~~d~~~~~-~~a-----------~~~g-------------v~~~-~l~ell~ 151 (333)
++|+|||.|.||..+|..+. ..|++|..||+.... +.+ .+.| ++.. ++ +.++
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 388 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDY-RGFK 388 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCCh-HHhc
Confidence 68999999999999999888 789999999986521 111 0111 1111 34 4578
Q ss_pred CCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCC
Q psy6348 152 LADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCE 217 (333)
Q Consensus 152 ~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~ 217 (333)
+||+|+=++|.+.+.+.-+-.+.-+.++++++|...+.+ +....|.+.+.. .=+..++..|.+
T Consensus 389 ~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~--l~i~~la~~~~~-p~r~ig~Hff~P 451 (708)
T PRK11154 389 HADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSS--LPIGQIAAAAAR-PEQVIGLHYFSP 451 (708)
T ss_pred cCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHHhcCc-ccceEEEecCCc
Confidence 999999999998888888878877889999999766554 566667777643 223477877753
No 166
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.72 E-value=0.00012 Score=71.22 Aligned_cols=90 Identities=20% Similarity=0.270 Sum_probs=63.9
Q ss_pred CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHHhc---------Cc------cc-cChhhhccCCCEEEEecC
Q psy6348 99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAAKL---------NI------AS-LGLEDIWPLADYITVHTP 161 (333)
Q Consensus 99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~---------gv------~~-~~l~ell~~aDvV~l~~P 161 (333)
++|+|||.|.+|..+|..|...| +|..|.++... +...+. +. .. .++++.++.+|+|++++|
T Consensus 8 mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVilavp 86 (341)
T PRK12439 8 PKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVMGVP 86 (341)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEEEeC
Confidence 58999999999999999999988 67778764321 111211 11 11 256778899999999999
Q ss_pred CchhhHhhccHHHHhccCCCcEEEEccCCc
Q psy6348 162 LIPQTKNLINAEVLKKCKKGVRVVNVARGG 191 (333)
Q Consensus 162 ~t~~t~~li~~~~~~~mk~gailIN~aRg~ 191 (333)
+..++..+ ++....++++..+|++.-|=
T Consensus 87 -s~~~~~vl-~~i~~~l~~~~~vIsl~kGi 114 (341)
T PRK12439 87 -SHGFRGVL-TELAKELRPWVPVVSLVKGL 114 (341)
T ss_pred -HHHHHHHH-HHHHhhcCCCCEEEEEEeCC
Confidence 34555554 44445678888999998863
No 167
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.71 E-value=0.00016 Score=68.76 Aligned_cols=81 Identities=22% Similarity=0.320 Sum_probs=67.8
Q ss_pred ccccCCCEEEEEecC-hHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhcc
Q psy6348 93 GTELYGKTLAVLGLG-RIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLIN 171 (333)
Q Consensus 93 g~~l~gktvGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~ 171 (333)
+.++.||++.|||-+ .+|+.+|..|...|..|+.++.+. .++.+.+++||+|+.+++. .+++.
T Consensus 153 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~t------------~~l~~~~~~ADIvI~AvG~----p~~i~ 216 (284)
T PRK14190 153 NIDISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSKT------------KNLAELTKQADILIVAVGK----PKLIT 216 (284)
T ss_pred CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCCc------------hhHHHHHHhCCEEEEecCC----CCcCC
Confidence 567999999999994 689999999999999999987532 2578889999999999963 45788
Q ss_pred HHHHhccCCCcEEEEccCCcc
Q psy6348 172 AEVLKKCKKGVRVVNVARGGI 192 (333)
Q Consensus 172 ~~~~~~mk~gailIN~aRg~~ 192 (333)
.+.+ |+|+++||++...+
T Consensus 217 ~~~i---k~gavVIDvGi~~~ 234 (284)
T PRK14190 217 ADMV---KEGAVVIDVGVNRL 234 (284)
T ss_pred HHHc---CCCCEEEEeecccc
Confidence 7775 89999999987653
No 168
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=97.71 E-value=0.00012 Score=71.02 Aligned_cols=89 Identities=15% Similarity=0.179 Sum_probs=64.5
Q ss_pred CCEEEEEecChHHHHHHHHHhh--CCCEEEEEcCCCCHH-H-H---HhcCcc--c-cChhhhccCCCEEEEecCCchhhH
Q psy6348 98 GKTLAVLGLGRIGREVALRMQA--FGMKVIGFDPMVSVE-D-A---AKLNIA--S-LGLEDIWPLADYITVHTPLIPQTK 167 (333)
Q Consensus 98 gktvGIIGlG~IG~~vA~~l~~--~G~~V~~~d~~~~~~-~-a---~~~gv~--~-~~l~ell~~aDvV~l~~P~t~~t~ 167 (333)
-+++||||.|.+|+..++.+.. ..-+|.+||++.... . + .+.|+. . .+.++++++||+|++|+|. ..
T Consensus 128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s---~~ 204 (325)
T TIGR02371 128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPS---RK 204 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCC---CC
Confidence 4799999999999997766543 245899999976331 1 1 234532 2 3799999999999999984 34
Q ss_pred hhccHHHHhccCCCcEEEEccCCcc
Q psy6348 168 NLINAEVLKKCKKGVRVVNVARGGI 192 (333)
Q Consensus 168 ~li~~~~~~~mk~gailIN~aRg~~ 192 (333)
.++..+. +|+|+.+..++....
T Consensus 205 P~~~~~~---l~~g~~v~~vGs~~p 226 (325)
T TIGR02371 205 PVVKADW---VSEGTHINAIGADAP 226 (325)
T ss_pred cEecHHH---cCCCCEEEecCCCCc
Confidence 6665543 699999999985443
No 169
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.71 E-value=0.00018 Score=69.26 Aligned_cols=90 Identities=17% Similarity=0.305 Sum_probs=62.1
Q ss_pred EEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHHhc--Ccc------------c-cChhhhc-cCCCEEEEecCC
Q psy6348 100 TLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAAKL--NIA------------S-LGLEDIW-PLADYITVHTPL 162 (333)
Q Consensus 100 tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~--gv~------------~-~~l~ell-~~aDvV~l~~P~ 162 (333)
+|+|||.|.||..+|..|...|.+|..|+++... +...+. +.. . .++++.+ ..+|+|++++|.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiavks 81 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAVPT 81 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEeCH
Confidence 6999999999999999999999999999985421 112211 111 1 1455665 589999999993
Q ss_pred chhhHhhccHHHHh-ccCCCcEEEEccCCc
Q psy6348 163 IPQTKNLINAEVLK-KCKKGVRVVNVARGG 191 (333)
Q Consensus 163 t~~t~~li~~~~~~-~mk~gailIN~aRg~ 191 (333)
..+..++ ++... .++++..+|.+.-|=
T Consensus 82 -~~~~~~l-~~l~~~~l~~~~~vv~~~nGi 109 (326)
T PRK14620 82 -QQLRTIC-QQLQDCHLKKNTPILICSKGI 109 (326)
T ss_pred -HHHHHHH-HHHHHhcCCCCCEEEEEEcCe
Confidence 4455554 33334 567777777776663
No 170
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=97.70 E-value=0.00015 Score=64.69 Aligned_cols=96 Identities=21% Similarity=0.121 Sum_probs=60.2
Q ss_pred ccccCCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCCCHH--HHHhc----Ccc--c---c---ChhhhccCCCEEE
Q psy6348 93 GTELYGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMVSVE--DAAKL----NIA--S---L---GLEDIWPLADYIT 157 (333)
Q Consensus 93 g~~l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~~~--~a~~~----gv~--~---~---~l~ell~~aDvV~ 157 (333)
|..+.++++.|+|. |.+|+.+++.+...|.+|+.++|..... ..... +.+ . . ++.+.++++|+|+
T Consensus 23 ~~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi 102 (194)
T cd01078 23 GKDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVF 102 (194)
T ss_pred CcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEE
Confidence 45678999999996 9999999999999999999999865221 11111 111 1 1 2346677888888
Q ss_pred EecCCchhhHhhccHHHHhccCCCcEEEEccCCcc
Q psy6348 158 VHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGI 192 (333)
Q Consensus 158 l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~ 192 (333)
.++|.... ..+..+ ...+++.+++|+.+...
T Consensus 103 ~at~~g~~--~~~~~~--~~~~~~~vv~D~~~~~~ 133 (194)
T cd01078 103 AAGAAGVE--LLEKLA--WAPKPLAVAADVNAVPP 133 (194)
T ss_pred ECCCCCce--echhhh--cccCceeEEEEccCCCC
Confidence 88774432 111111 12344566666655543
No 171
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=97.69 E-value=0.00035 Score=68.52 Aligned_cols=154 Identities=19% Similarity=0.180 Sum_probs=112.4
Q ss_pred CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH--HHHHhcC----cc-ccChhhh---ccCCCEEEEecCCchhhHh
Q psy6348 99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV--EDAAKLN----IA-SLGLEDI---WPLADYITVHTPLIPQTKN 168 (333)
Q Consensus 99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~--~~a~~~g----v~-~~~l~el---l~~aDvV~l~~P~t~~t~~ 168 (333)
..+|+||+|-||+.+|......|++|.+|+|+.+. +..++.+ +. ..+++|+ ++.---|++++-.-.-...
T Consensus 4 ~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI~lMVkAG~~VD~ 83 (473)
T COG0362 4 ADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLMVKAGTPVDA 83 (473)
T ss_pred cceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCccCCCccccCcHHHHHHHhcCCceEEEEEecCCcHHH
Confidence 46999999999999999999999999999998743 3333332 21 2366665 5667788888754322244
Q ss_pred hccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCccchhhcCCCcEEEccCCCCCcHHHH
Q psy6348 169 LINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQ 248 (333)
Q Consensus 169 li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~L~~~pnvi~TPHi~~~t~ea~ 248 (333)
+| ++++..|.+|-++|+-+...--|+..-.++|.+..|...+.-|...|--. +.-|.+ +-|-+.|++
T Consensus 84 ~I-~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA-------~~GPSi-----MpGG~~eay 150 (473)
T COG0362 84 VI-EQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGA-------RHGPSI-----MPGGQKEAY 150 (473)
T ss_pred HH-HHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEecccccccccc-------ccCCCc-----CCCCCHHHH
Confidence 44 67788999999999999999999999999999999999999998877421 122333 234577888
Q ss_pred HHHHHHHHHHHHHhHcCC
Q psy6348 249 IRVAVEIAEQFIALANTN 266 (333)
Q Consensus 249 ~~~~~~~~~~i~~~~~~~ 266 (333)
+.+.- +.+.|.+-..|+
T Consensus 151 ~~v~p-il~~IaAk~~g~ 167 (473)
T COG0362 151 ELVAP-ILTKIAAKVDGE 167 (473)
T ss_pred HHHHH-HHHHHHhhcCCC
Confidence 77654 346666644454
No 172
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.68 E-value=0.00023 Score=67.58 Aligned_cols=81 Identities=26% Similarity=0.309 Sum_probs=67.2
Q ss_pred CccccCCCEEEEEecC-hHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhc
Q psy6348 92 TGTELYGKTLAVLGLG-RIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLI 170 (333)
Q Consensus 92 ~g~~l~gktvGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li 170 (333)
.+.++.||++.|||-+ .+|+.+|..|...|+.|+.++... .++.+.+++||+|+.+++. .+++
T Consensus 151 ~~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~T------------~~l~~~~~~ADIvI~AvG~----~~~i 214 (284)
T PRK14170 151 TGTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRT------------KDLPQVAKEADILVVATGL----AKFV 214 (284)
T ss_pred hCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC------------CCHHHHHhhCCEEEEecCC----cCcc
Confidence 3568999999999996 579999999999999999987632 2578889999999999974 4567
Q ss_pred cHHHHhccCCCcEEEEccCCc
Q psy6348 171 NAEVLKKCKKGVRVVNVARGG 191 (333)
Q Consensus 171 ~~~~~~~mk~gailIN~aRg~ 191 (333)
..+. .|+|+++||++-..
T Consensus 215 ~~~~---vk~GavVIDvGin~ 232 (284)
T PRK14170 215 KKDY---IKPGAIVIDVGMDR 232 (284)
T ss_pred CHHH---cCCCCEEEEccCcc
Confidence 7665 58999999998665
No 173
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=97.66 E-value=0.00015 Score=72.21 Aligned_cols=93 Identities=26% Similarity=0.338 Sum_probs=69.1
Q ss_pred cCCCEEEEEecChHHHHHHHHHhhCC-CEEEEEcCCCCH--HHHHhcCccccC---hhhhccCCCEEEEecCCchhhHhh
Q psy6348 96 LYGKTLAVLGLGRIGREVALRMQAFG-MKVIGFDPMVSV--EDAAKLNIASLG---LEDIWPLADYITVHTPLIPQTKNL 169 (333)
Q Consensus 96 l~gktvGIIGlG~IG~~vA~~l~~~G-~~V~~~d~~~~~--~~a~~~gv~~~~---l~ell~~aDvV~l~~P~t~~t~~l 169 (333)
|.++++.|||+|.||..+|+.|...| .+|++.+|+... +.++++|..+.+ +.+.+.++|+|+.++. ....+
T Consensus 176 L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTs---a~~~i 252 (414)
T COG0373 176 LKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTS---APHPI 252 (414)
T ss_pred cccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecC---CCccc
Confidence 78999999999999999999999999 478888997743 447778876654 5567899999999964 44556
Q ss_pred ccHHHHhcc-C--CCcEEEEccCCc
Q psy6348 170 INAEVLKKC-K--KGVRVVNVARGG 191 (333)
Q Consensus 170 i~~~~~~~m-k--~gailIN~aRg~ 191 (333)
+..+.+... + +.-++||.+=..
T Consensus 253 i~~~~ve~a~~~r~~~livDiavPR 277 (414)
T COG0373 253 ITREMVERALKIRKRLLIVDIAVPR 277 (414)
T ss_pred cCHHHHHHHHhcccCeEEEEecCCC
Confidence 665554432 1 124778775443
No 174
>PRK14031 glutamate dehydrogenase; Provisional
Probab=97.65 E-value=0.00029 Score=70.85 Aligned_cols=117 Identities=21% Similarity=0.196 Sum_probs=77.9
Q ss_pred ccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcC--------C-CCHHHH------------------HhcCccccC
Q psy6348 93 GTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDP--------M-VSVEDA------------------AKLNIASLG 145 (333)
Q Consensus 93 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~--------~-~~~~~a------------------~~~gv~~~~ 145 (333)
|.+|.|+|+.|.|+|++|+..|+.|..+|.+|++..+ . .+.+.. ...+.+..+
T Consensus 223 g~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~~i~ 302 (444)
T PRK14031 223 GTDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCKYVE 302 (444)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCEEcC
Confidence 5689999999999999999999999999999998432 1 111111 111334445
Q ss_pred hhhhc-cCCCEEEEecCCchhhHhhccHHHHhccCC-CcEEEEccCCcccchHhHHhhhhcCCceEEEeccCC
Q psy6348 146 LEDIW-PLADYITVHTPLIPQTKNLINAEVLKKCKK-GVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFC 216 (333)
Q Consensus 146 l~ell-~~aDvV~l~~P~t~~t~~li~~~~~~~mk~-gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~ 216 (333)
-++++ ..||+++-| .+.+.|+.+....++. |..+|--+-..++..++.. .|.+..|. .+=|+..
T Consensus 303 ~d~~~~~~cDIliPa-----Al~n~I~~~na~~l~a~g~~~V~EgAN~P~t~eA~~-~L~~rgI~-~~PD~~a 368 (444)
T PRK14031 303 GARPWGEKGDIALPS-----ATQNELNGDDARQLVANGVIAVSEGANMPSTPEAIK-VFQDAKIL-YAPGKAA 368 (444)
T ss_pred CcccccCCCcEEeec-----ccccccCHHHHHHHHhcCCeEEECCCCCCCCHHHHH-HHHHCCcE-EeChhhc
Confidence 55654 469999877 4578899998888865 5555555554466666654 44445443 4455433
No 175
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=97.65 E-value=0.00018 Score=61.13 Aligned_cols=109 Identities=17% Similarity=0.188 Sum_probs=75.2
Q ss_pred EEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccC---------------hhhhccCCCEEEEecCCchh
Q psy6348 101 LAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLG---------------LEDIWPLADYITVHTPLIPQ 165 (333)
Q Consensus 101 vGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~---------------l~ell~~aDvV~l~~P~t~~ 165 (333)
|.|+|.|.||.-+|.+|+..|.+|..+++....+..++.|+.... ..+....+|+|++++.. .+
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa-~~ 79 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSPRLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKA-YQ 79 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHHHHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSG-GG
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccccHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEecc-cc
Confidence 689999999999999999999999999986523434555553211 11356789999999974 44
Q ss_pred hHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEe
Q psy6348 166 TKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAAL 212 (333)
Q Consensus 166 t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaal 212 (333)
+...+.. ....+++++.++-. -.++-.++.+.+.+...++.++..
T Consensus 80 ~~~~l~~-l~~~~~~~t~iv~~-qNG~g~~~~l~~~~~~~~v~~g~~ 124 (151)
T PF02558_consen 80 LEQALQS-LKPYLDPNTTIVSL-QNGMGNEEVLAEYFPRPRVLGGVT 124 (151)
T ss_dssp HHHHHHH-HCTGEETTEEEEEE-SSSSSHHHHHHCHSTGSGEEEEEE
T ss_pred hHHHHHH-HhhccCCCcEEEEE-eCCCCcHHHHHHHcCCCcEEEEEE
Confidence 5555533 55666777677655 444667788888886666655443
No 176
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=97.64 E-value=0.00024 Score=66.77 Aligned_cols=95 Identities=21% Similarity=0.219 Sum_probs=62.2
Q ss_pred ccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH--HHHHhc---C-ccccChhhh-ccCCCEEEEecCCch--h
Q psy6348 95 ELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV--EDAAKL---N-IASLGLEDI-WPLADYITVHTPLIP--Q 165 (333)
Q Consensus 95 ~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~--~~a~~~---g-v~~~~l~el-l~~aDvV~l~~P~t~--~ 165 (333)
...+|+++|+|.|.+|+.++..+...|.+|+++++.... +.+++. + ....++++. ..++|+|+.++|..- .
T Consensus 114 ~~~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~gm~~~ 193 (270)
T TIGR00507 114 LRPNQRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAGMSGN 193 (270)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEechhhhcccCccEEEECCCCCCCCC
Confidence 356899999999999999999999999999999986522 112221 2 122344443 357999999999631 1
Q ss_pred hHh-hccHHHHhccCCCcEEEEccCCcc
Q psy6348 166 TKN-LINAEVLKKCKKGVRVVNVARGGI 192 (333)
Q Consensus 166 t~~-li~~~~~~~mk~gailIN~aRg~~ 192 (333)
... .+. .+.++++.+++++.-...
T Consensus 194 ~~~~~~~---~~~l~~~~~v~D~~y~p~ 218 (270)
T TIGR00507 194 IDEPPVP---AEKLKEGMVVYDMVYNPG 218 (270)
T ss_pred CCCCCCC---HHHcCCCCEEEEeccCCC
Confidence 111 111 234667777777755443
No 177
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=97.63 E-value=0.00019 Score=64.95 Aligned_cols=88 Identities=14% Similarity=0.162 Sum_probs=60.3
Q ss_pred cccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHH--HhcC-cccc--Ch-hhhccCCCEEEEecCCchhhH
Q psy6348 94 TELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDA--AKLN-IASL--GL-EDIWPLADYITVHTPLIPQTK 167 (333)
Q Consensus 94 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a--~~~g-v~~~--~l-~ell~~aDvV~l~~P~t~~t~ 167 (333)
.++.||++.|||.|.+|...++.|...|.+|++++|....+.. ...+ +.+. .+ ++.+..+|+|+.++...+-+
T Consensus 6 l~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~d~elN- 84 (202)
T PRK06718 6 IDLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATNDPRVN- 84 (202)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCCCHHHH-
Confidence 5789999999999999999999999999999999987644321 1222 3222 22 34578899999988754333
Q ss_pred hhccHHHHhccCCCcEEEEc
Q psy6348 168 NLINAEVLKKCKKGVRVVNV 187 (333)
Q Consensus 168 ~li~~~~~~~mk~gailIN~ 187 (333)
..+ ....+.+ .++|+
T Consensus 85 ~~i----~~~a~~~-~lvn~ 99 (202)
T PRK06718 85 EQV----KEDLPEN-ALFNV 99 (202)
T ss_pred HHH----HHHHHhC-CcEEE
Confidence 233 2222333 47777
No 178
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.62 E-value=0.00022 Score=68.12 Aligned_cols=117 Identities=26% Similarity=0.234 Sum_probs=83.4
Q ss_pred ccccCCCEEEEEecC-hHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhcc
Q psy6348 93 GTELYGKTLAVLGLG-RIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLIN 171 (333)
Q Consensus 93 g~~l~gktvGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~ 171 (333)
+.++.||++.|||-+ .+|+.+|..|...|+.|..+.... .++.+.+++||+|+.+++. .+++.
T Consensus 153 ~i~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~T------------~~l~~~~~~ADIvIsAvGk----p~~i~ 216 (297)
T PRK14186 153 QIDIAGKKAVVVGRSILVGKPLALMLLAANATVTIAHSRT------------QDLASITREADILVAAAGR----PNLIG 216 (297)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC------------CCHHHHHhhCCEEEEccCC----cCccC
Confidence 568999999999995 589999999999999999987532 2578889999999999974 35677
Q ss_pred HHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCccchhhcCCCcEEEccCCCCCcHHH
Q psy6348 172 AEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEA 247 (333)
Q Consensus 172 ~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~L~~~pnvi~TPHi~~~t~ea 247 (333)
.+. +|+|+++||++-..+.+.. ++|++. =||-.++ .... --.+||--||.-.=+
T Consensus 217 ~~~---ik~gavVIDvGin~~~~~~------~~gkl~---GDvd~~~---------v~~~-a~~iTPVPGGVGp~T 270 (297)
T PRK14186 217 AEM---VKPGAVVVDVGIHRLPSSD------GKTRLC---GDVDFEE---------VEPV-AAAITPVPGGVGPMT 270 (297)
T ss_pred HHH---cCCCCEEEEeccccccccc------cCCcee---CCccHHH---------HHhh-ceEecCCCCCchHHH
Confidence 665 5899999999866542211 135543 3652111 1111 237899978765433
No 179
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=97.62 E-value=0.0002 Score=69.20 Aligned_cols=105 Identities=16% Similarity=0.163 Sum_probs=67.6
Q ss_pred CEEEEEecChHHHHHHHHHhhC-CCEEEE-EcCCCCHHHHHhcCccc-cChhhhccCCCEEEEecCCchhhHhhccHHHH
Q psy6348 99 KTLAVLGLGRIGREVALRMQAF-GMKVIG-FDPMVSVEDAAKLNIAS-LGLEDIWPLADYITVHTPLIPQTKNLINAEVL 175 (333)
Q Consensus 99 ktvGIIGlG~IG~~vA~~l~~~-G~~V~~-~d~~~~~~~a~~~gv~~-~~l~ell~~aDvV~l~~P~t~~t~~li~~~~~ 175 (333)
.+|||||+|+||+.+++.+... ++++.+ ||+..........++.. .+.++++.+.|+|++|+|.... -....
T Consensus 4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~~~~~v~~~~d~~e~l~~iDVViIctPs~th-----~~~~~ 78 (324)
T TIGR01921 4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLDTETPVYAVADDEKHLDDVDVLILCMGSATD-----IPEQA 78 (324)
T ss_pred cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHhhcCCccccCCHHHhccCCCEEEEcCCCccC-----HHHHH
Confidence 5899999999999999988765 899887 68764222222234322 3677788899999999985433 13344
Q ss_pred hccCCCcEEEEccCC--cccc-hHhHHhhhhc-CCce
Q psy6348 176 KKCKKGVRVVNVARG--GIVD-ENALLDSLKC-GHCG 208 (333)
Q Consensus 176 ~~mk~gailIN~aRg--~~vd-~~aL~~aL~~-g~i~ 208 (333)
..++.|.-+|+..-- .+-+ .+.|-++-++ |++.
T Consensus 79 ~~L~aG~NVV~s~~~h~~~p~~~~~ld~AAk~~g~vs 115 (324)
T TIGR01921 79 PYFAQFANTVDSFDNHRDIPRHRQVMDAAAKAAGNVS 115 (324)
T ss_pred HHHHcCCCEEECCCcccCCHHHHHHHHHHHHHcCCEE
Confidence 556777778877432 1112 2334444453 5654
No 180
>PRK07340 ornithine cyclodeaminase; Validated
Probab=97.62 E-value=0.00017 Score=69.18 Aligned_cols=89 Identities=18% Similarity=0.072 Sum_probs=65.8
Q ss_pred CCCEEEEEecChHHHHHHHHHhh-CCC-EEEEEcCCCCH--HHHHhc---Cccc--cChhhhccCCCEEEEecCCchhhH
Q psy6348 97 YGKTLAVLGLGRIGREVALRMQA-FGM-KVIGFDPMVSV--EDAAKL---NIAS--LGLEDIWPLADYITVHTPLIPQTK 167 (333)
Q Consensus 97 ~gktvGIIGlG~IG~~vA~~l~~-~G~-~V~~~d~~~~~--~~a~~~---gv~~--~~l~ell~~aDvV~l~~P~t~~t~ 167 (333)
..++++|||.|.+|+..++.+.. ++. +|.+|+++... ..+.++ ++.. .++++++.++|+|+.++|.+ .
T Consensus 124 ~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s~---~ 200 (304)
T PRK07340 124 PPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTATTSR---T 200 (304)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEccCCC---C
Confidence 56899999999999999998864 564 79999997632 222222 3332 37889999999999999843 4
Q ss_pred hhccHHHHhccCCCcEEEEccCCcc
Q psy6348 168 NLINAEVLKKCKKGVRVVNVARGGI 192 (333)
Q Consensus 168 ~li~~~~~~~mk~gailIN~aRg~~ 192 (333)
.++.. .+|||+.++.++.-..
T Consensus 201 Pl~~~----~~~~g~hi~~iGs~~p 221 (304)
T PRK07340 201 PVYPE----AARAGRLVVAVGAFTP 221 (304)
T ss_pred ceeCc----cCCCCCEEEecCCCCC
Confidence 66643 3699999999986443
No 181
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.59 E-value=0.00026 Score=67.30 Aligned_cols=81 Identities=25% Similarity=0.294 Sum_probs=67.6
Q ss_pred ccccCCCEEEEEecC-hHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhcc
Q psy6348 93 GTELYGKTLAVLGLG-RIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLIN 171 (333)
Q Consensus 93 g~~l~gktvGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~ 171 (333)
+.++.||++.|||-+ .+|+.+|..|...|..|+.+.... .++.+..++||+|+.++.. .+++.
T Consensus 150 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~T------------~~l~~~~~~ADIvIsAvGk----p~~i~ 213 (287)
T PRK14173 150 GIPLAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSKT------------QDLPAVTRRADVLVVAVGR----PHLIT 213 (287)
T ss_pred CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCC------------CCHHHHHhhCCEEEEecCC----cCccC
Confidence 568999999999995 689999999999999999887642 2578889999999999973 46777
Q ss_pred HHHHhccCCCcEEEEccCCcc
Q psy6348 172 AEVLKKCKKGVRVVNVARGGI 192 (333)
Q Consensus 172 ~~~~~~mk~gailIN~aRg~~ 192 (333)
.+. +|+|+++||++-..+
T Consensus 214 ~~~---vk~GavVIDVGin~~ 231 (287)
T PRK14173 214 PEM---VRPGAVVVDVGINRV 231 (287)
T ss_pred HHH---cCCCCEEEEccCccc
Confidence 666 489999999987654
No 182
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.58 E-value=0.00025 Score=67.25 Aligned_cols=80 Identities=23% Similarity=0.296 Sum_probs=66.5
Q ss_pred ccccCCCEEEEEecC-hHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhcc
Q psy6348 93 GTELYGKTLAVLGLG-RIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLIN 171 (333)
Q Consensus 93 g~~l~gktvGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~ 171 (333)
+.++.||++.|||-+ .+|+.+|..|...|..|+.+.... .++.+..++||+|+.+++. .+++.
T Consensus 151 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~T------------~~l~~~~~~ADIvI~AvG~----p~~i~ 214 (282)
T PRK14169 151 DIDVAGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKT------------RNLKQLTKEADILVVAVGV----PHFIG 214 (282)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEECCCC------------CCHHHHHhhCCEEEEccCC----cCccC
Confidence 568999999999995 589999999999999999886532 2578889999999999974 45677
Q ss_pred HHHHhccCCCcEEEEccCCc
Q psy6348 172 AEVLKKCKKGVRVVNVARGG 191 (333)
Q Consensus 172 ~~~~~~mk~gailIN~aRg~ 191 (333)
.+. +|+|+++||++-..
T Consensus 215 ~~~---vk~GavVIDvGin~ 231 (282)
T PRK14169 215 ADA---VKPGAVVIDVGISR 231 (282)
T ss_pred HHH---cCCCcEEEEeeccc
Confidence 765 58999999998644
No 183
>PRK14982 acyl-ACP reductase; Provisional
Probab=97.58 E-value=0.00024 Score=69.17 Aligned_cols=98 Identities=28% Similarity=0.297 Sum_probs=71.9
Q ss_pred CccccCCCEEEEEec-ChHHHHHHHHHhh-CC-CEEEEEcCCCCH--HHHHhcC-ccccChhhhccCCCEEEEecCCchh
Q psy6348 92 TGTELYGKTLAVLGL-GRIGREVALRMQA-FG-MKVIGFDPMVSV--EDAAKLN-IASLGLEDIWPLADYITVHTPLIPQ 165 (333)
Q Consensus 92 ~g~~l~gktvGIIGl-G~IG~~vA~~l~~-~G-~~V~~~d~~~~~--~~a~~~g-v~~~~l~ell~~aDvV~l~~P~t~~ 165 (333)
.+.++.||++.|+|. |.||+.+++.|.. .| .+++.+++.... +...+.+ ....++++.+.++|+|+.+.- .
T Consensus 149 lg~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~~l~~~l~~aDiVv~~ts---~ 225 (340)
T PRK14982 149 LGIDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKILSLEEALPEADIVVWVAS---M 225 (340)
T ss_pred hccCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHHhHHHHHccCCEEEECCc---C
Confidence 356799999999999 8999999999974 56 489999885422 1122332 233478899999999887764 2
Q ss_pred hHh-hccHHHHhccCCCcEEEEccCCcccch
Q psy6348 166 TKN-LINAEVLKKCKKGVRVVNVARGGIVDE 195 (333)
Q Consensus 166 t~~-li~~~~~~~mk~gailIN~aRg~~vd~ 195 (333)
... .++.+. ++++.++||.|+..=|+.
T Consensus 226 ~~~~~I~~~~---l~~~~~viDiAvPRDVd~ 253 (340)
T PRK14982 226 PKGVEIDPET---LKKPCLMIDGGYPKNLDT 253 (340)
T ss_pred CcCCcCCHHH---hCCCeEEEEecCCCCCCc
Confidence 234 366654 489999999999987775
No 184
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.58 E-value=0.00029 Score=66.89 Aligned_cols=80 Identities=20% Similarity=0.272 Sum_probs=66.5
Q ss_pred ccccCCCEEEEEecC-hHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhcc
Q psy6348 93 GTELYGKTLAVLGLG-RIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLIN 171 (333)
Q Consensus 93 g~~l~gktvGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~ 171 (333)
+.++.||++.|||-+ .+|+.+|..|...|+.|+.++... .++.+..++||+|+.+++. .+++.
T Consensus 154 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~T------------~~l~~~~~~ADIvIsAvGk----~~~i~ 217 (284)
T PRK14177 154 GIDVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKT------------QNLPSIVRQADIIVGAVGK----PEFIK 217 (284)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC------------CCHHHHHhhCCEEEEeCCC----cCccC
Confidence 568999999999995 589999999999999999998642 2577889999999999874 45677
Q ss_pred HHHHhccCCCcEEEEccCCc
Q psy6348 172 AEVLKKCKKGVRVVNVARGG 191 (333)
Q Consensus 172 ~~~~~~mk~gailIN~aRg~ 191 (333)
.+. .|+|+++||++-..
T Consensus 218 ~~~---ik~gavVIDvGin~ 234 (284)
T PRK14177 218 ADW---ISEGAVLLDAGYNP 234 (284)
T ss_pred HHH---cCCCCEEEEecCcc
Confidence 665 58999999997543
No 185
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=97.57 E-value=0.00036 Score=67.00 Aligned_cols=114 Identities=16% Similarity=0.210 Sum_probs=74.9
Q ss_pred CEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCCCHHHHHhc---------C----ccc-cChhhhccCCCEEEEecCCc
Q psy6348 99 KTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMVSVEDAAKL---------N----IAS-LGLEDIWPLADYITVHTPLI 163 (333)
Q Consensus 99 ktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~~~a~~~---------g----v~~-~~l~ell~~aDvV~l~~P~t 163 (333)
++|+|||.|.||..+|..+...|. +|+.+|........... . +.. .++++ +++||+|+++++..
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVIitag~p 80 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVVITAGLP 80 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEEEcCCCC
Confidence 589999999999999999988776 89999986543332211 0 111 25655 78999999998832
Q ss_pred h-----------hhHhhccH--HHHhccCCCcEEEEccCCcccchHhHHhh--hhcCCceEEE--ec
Q psy6348 164 P-----------QTKNLINA--EVLKKCKKGVRVVNVARGGIVDENALLDS--LKCGHCGGAA--LD 213 (333)
Q Consensus 164 ~-----------~t~~li~~--~~~~~mk~gailIN~aRg~~vd~~aL~~a--L~~g~i~gaa--lD 213 (333)
. .+..++.. +.+....+++++|+++-.-=+-...+.+. +...++.|.+ ||
T Consensus 81 ~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~di~t~~~~~~sg~~~~rviG~g~~ld 147 (305)
T TIGR01763 81 RKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDAMTYVAWQKSGFPKERVIGQAGVLD 147 (305)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHHCcCHHHEEEeccchH
Confidence 1 11122211 22333457889999987665555566665 5566677775 67
No 186
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=97.57 E-value=0.00049 Score=62.20 Aligned_cols=92 Identities=24% Similarity=0.327 Sum_probs=67.5
Q ss_pred cccCCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC-CH----------H-----HH-------HhcC--cc--c--
Q psy6348 94 TELYGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV-SV----------E-----DA-------AKLN--IA--S-- 143 (333)
Q Consensus 94 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~----------~-----~a-------~~~g--v~--~-- 143 (333)
..|..++|+|+|+|.+|+.+|..|...|. +++.+|+.. .. + ++ .+.. +. .
T Consensus 17 ~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~ 96 (200)
T TIGR02354 17 QKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYD 96 (200)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEee
Confidence 45888999999999999999999999999 699998761 00 0 00 0000 11 0
Q ss_pred -----cChhhhccCCCEEEEecCCchhhHhhccHHHHhccCCCcEEEE
Q psy6348 144 -----LGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVN 186 (333)
Q Consensus 144 -----~~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN 186 (333)
.+++++++++|+|+-+ ..+.+++.++.......+++..++..
T Consensus 97 ~~i~~~~~~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~ii~~ 143 (200)
T TIGR02354 97 EKITEENIDKFFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYLIAA 143 (200)
T ss_pred eeCCHhHHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 1245578899999999 57889999998888888877666664
No 187
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=97.57 E-value=0.00028 Score=63.98 Aligned_cols=89 Identities=22% Similarity=0.144 Sum_probs=63.3
Q ss_pred cccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHH--HHhc-Ccccc--C-hhhhccCCCEEEEecCCchhhH
Q psy6348 94 TELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVED--AAKL-NIASL--G-LEDIWPLADYITVHTPLIPQTK 167 (333)
Q Consensus 94 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~--a~~~-gv~~~--~-l~ell~~aDvV~l~~P~t~~t~ 167 (333)
.++.|+++.|||.|.+|..-++.|..+|.+|.+++|....+. ..+. .+++. + -.+.+..+|+|+.++...+
T Consensus 5 l~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~~dl~~~~lVi~at~d~~--- 81 (205)
T TIGR01470 5 ANLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFDADILEGAFLVIAATDDEE--- 81 (205)
T ss_pred EEcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCCHHHhCCcEEEEECCCCHH---
Confidence 468999999999999999999999999999999999875432 1222 34332 1 2355788999888865432
Q ss_pred hhccHHHHhccCCCcEEEEc
Q psy6348 168 NLINAEVLKKCKKGVRVVNV 187 (333)
Q Consensus 168 ~li~~~~~~~mk~gailIN~ 187 (333)
++.......+.-.++||+
T Consensus 82 --ln~~i~~~a~~~~ilvn~ 99 (205)
T TIGR01470 82 --LNRRVAHAARARGVPVNV 99 (205)
T ss_pred --HHHHHHHHHHHcCCEEEE
Confidence 334445555555678886
No 188
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.57 E-value=0.00027 Score=66.88 Aligned_cols=80 Identities=23% Similarity=0.319 Sum_probs=66.5
Q ss_pred ccccCCCEEEEEecC-hHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhcc
Q psy6348 93 GTELYGKTLAVLGLG-RIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLIN 171 (333)
Q Consensus 93 g~~l~gktvGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~ 171 (333)
+.++.||++.|||-+ .+|+.+|..|...|+.|..++... .++.+..++||+|+.+++. .+++.
T Consensus 153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~T------------~~l~~~~~~ADIvIsAvGk----p~~i~ 216 (278)
T PRK14172 153 NIDIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSKT------------KNLKEVCKKADILVVAIGR----PKFID 216 (278)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC------------CCHHHHHhhCCEEEEcCCC----cCccC
Confidence 567899999999995 589999999999999999988532 2578889999999999974 45677
Q ss_pred HHHHhccCCCcEEEEccCCc
Q psy6348 172 AEVLKKCKKGVRVVNVARGG 191 (333)
Q Consensus 172 ~~~~~~mk~gailIN~aRg~ 191 (333)
.+. +|+|+++||++-..
T Consensus 217 ~~~---ik~gavVIDvGin~ 233 (278)
T PRK14172 217 EEY---VKEGAIVIDVGTSS 233 (278)
T ss_pred HHH---cCCCcEEEEeeccc
Confidence 766 58999999997544
No 189
>PRK09414 glutamate dehydrogenase; Provisional
Probab=97.56 E-value=0.0005 Score=69.21 Aligned_cols=117 Identities=20% Similarity=0.177 Sum_probs=76.9
Q ss_pred ccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEE-c-------CCC-CHHHHH---------------hcCccccChhh
Q psy6348 93 GTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGF-D-------PMV-SVEDAA---------------KLNIASLGLED 148 (333)
Q Consensus 93 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~-d-------~~~-~~~~a~---------------~~gv~~~~l~e 148 (333)
+.++.|+||.|.|||++|+.+|+.|..+|++|++. | +.- ..+... ..+.+..+.++
T Consensus 227 ~~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i~~~~ 306 (445)
T PRK09414 227 GDSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYLEGGS 306 (445)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeecCCcc
Confidence 45789999999999999999999999999999987 5 211 222110 00223345555
Q ss_pred hcc-CCCEEEEecCCchhhHhhccHHHHhccC-CCc-EEEEccCCcccchHhHHhhhhcCCceEEEeccCCC
Q psy6348 149 IWP-LADYITVHTPLIPQTKNLINAEVLKKCK-KGV-RVVNVARGGIVDENALLDSLKCGHCGGAALDVFCE 217 (333)
Q Consensus 149 ll~-~aDvV~l~~P~t~~t~~li~~~~~~~mk-~ga-ilIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~ 217 (333)
++. +||+++-|.. .+.|+.+....++ +++ +++-.+-+.+ ..+-.+.|.+..|. ++=|+..+
T Consensus 307 i~~~d~DVliPaAl-----~n~It~~~a~~i~~~~akiIvEgAN~p~--t~~A~~~L~~rGI~-~vPD~laN 370 (445)
T PRK09414 307 PWSVPCDIALPCAT-----QNELDEEDAKTLIANGVKAVAEGANMPS--TPEAIEVFLEAGVL-FAPGKAAN 370 (445)
T ss_pred ccccCCcEEEecCC-----cCcCCHHHHHHHHHcCCeEEEcCCCCCC--CHHHHHHHHHCCcE-EECchhhc
Confidence 554 6999998864 6678777766663 244 4555555665 44455677777665 55555433
No 190
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=97.56 E-value=0.00074 Score=61.85 Aligned_cols=107 Identities=30% Similarity=0.244 Sum_probs=68.2
Q ss_pred cccCCCEEEEEecChHHHHHHHHHhhCCCEEEE-EcCCC-------CH-HHH---Hhc-Cccc------cChhhhc-cCC
Q psy6348 94 TELYGKTLAVLGLGRIGREVALRMQAFGMKVIG-FDPMV-------SV-EDA---AKL-NIAS------LGLEDIW-PLA 153 (333)
Q Consensus 94 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~-~d~~~-------~~-~~a---~~~-gv~~------~~l~ell-~~a 153 (333)
.++.|+++.|.|||++|+.+|+.|...|.+|++ .|.+. +. +.. ++. ++.. .+-++++ .+|
T Consensus 19 ~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 98 (217)
T cd05211 19 DSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILGLDV 98 (217)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcccceeccc
Confidence 568999999999999999999999999997666 34432 11 111 111 2221 1223443 379
Q ss_pred CEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCce
Q psy6348 154 DYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCG 208 (333)
Q Consensus 154 DvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~ 208 (333)
|+++-|.+ .+.|+.+....++ =.+++-.+.+.+-+ .-.+.|++..+.
T Consensus 99 DVlipaA~-----~~~i~~~~a~~l~-a~~V~e~AN~p~t~--~a~~~L~~~Gi~ 145 (217)
T cd05211 99 DIFAPCAL-----GNVIDLENAKKLK-AKVVAEGANNPTTD--EALRILHERGIV 145 (217)
T ss_pred cEEeeccc-----cCccChhhHhhcC-ccEEEeCCCCCCCH--HHHHHHHHCCcE
Confidence 99999876 4578888777776 23444455555544 345666665553
No 191
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.55 E-value=0.00031 Score=66.67 Aligned_cols=80 Identities=28% Similarity=0.304 Sum_probs=66.7
Q ss_pred ccccCCCEEEEEecC-hHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhcc
Q psy6348 93 GTELYGKTLAVLGLG-RIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLIN 171 (333)
Q Consensus 93 g~~l~gktvGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~ 171 (333)
+.++.||++.|||-+ .+|+.+|..|...|..|+.++.+. .++.+..++||+|+.++.. .+++.
T Consensus 152 ~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T------------~nl~~~~~~ADIvIsAvGk----p~~i~ 215 (282)
T PRK14166 152 EIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT------------KDLSLYTRQADLIIVAAGC----VNLLR 215 (282)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC------------CCHHHHHhhCCEEEEcCCC----cCccC
Confidence 568999999999996 589999999999999999988642 2578889999999999974 45677
Q ss_pred HHHHhccCCCcEEEEccCCc
Q psy6348 172 AEVLKKCKKGVRVVNVARGG 191 (333)
Q Consensus 172 ~~~~~~mk~gailIN~aRg~ 191 (333)
.+. .|+|+++||++-..
T Consensus 216 ~~~---vk~GavVIDvGin~ 232 (282)
T PRK14166 216 SDM---VKEGVIVVDVGINR 232 (282)
T ss_pred HHH---cCCCCEEEEecccc
Confidence 765 58999999998543
No 192
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.53 E-value=0.00036 Score=66.24 Aligned_cols=79 Identities=23% Similarity=0.286 Sum_probs=65.7
Q ss_pred ccccCCCEEEEEecC-hHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhcc
Q psy6348 93 GTELYGKTLAVLGLG-RIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLIN 171 (333)
Q Consensus 93 g~~l~gktvGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~ 171 (333)
+.++.||++.|||-+ .+|+.+|..|...|..|..++.+. .++.+..++||+|+.+++. .+++.
T Consensus 153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T------------~dl~~~~k~ADIvIsAvGk----p~~i~ 216 (282)
T PRK14180 153 GIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT------------TDLKSHTTKADILIVAVGK----PNFIT 216 (282)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCC------------CCHHHHhhhcCEEEEccCC----cCcCC
Confidence 568999999999995 589999999999999999987642 2577788999999999974 45677
Q ss_pred HHHHhccCCCcEEEEccCC
Q psy6348 172 AEVLKKCKKGVRVVNVARG 190 (333)
Q Consensus 172 ~~~~~~mk~gailIN~aRg 190 (333)
.+. .|+|+++||++-.
T Consensus 217 ~~~---vk~gavVIDvGin 232 (282)
T PRK14180 217 ADM---VKEGAVVIDVGIN 232 (282)
T ss_pred HHH---cCCCcEEEEeccc
Confidence 655 5899999999754
No 193
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=97.52 E-value=0.00017 Score=68.86 Aligned_cols=93 Identities=23% Similarity=0.283 Sum_probs=70.7
Q ss_pred ccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHH-hcCcc-------ccChhhhccCCCEEEEec--CCc
Q psy6348 95 ELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAA-KLNIA-------SLGLEDIWPLADYITVHT--PLI 163 (333)
Q Consensus 95 ~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~-~~gv~-------~~~l~ell~~aDvV~l~~--P~t 163 (333)
.+..-++.|||.|-+|..-|+.+..+|.+|...|.+... .... .++.+ ...+++.++++|+|+-.+ |.
T Consensus 165 GV~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpg- 243 (371)
T COG0686 165 GVLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPG- 243 (371)
T ss_pred CCCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecC-
Confidence 355678999999999999999999999999999986422 1111 11221 125889999999998764 42
Q ss_pred hhhHhhccHHHHhccCCCcEEEEcc
Q psy6348 164 PQTKNLINAEVLKKCKKGVRVVNVA 188 (333)
Q Consensus 164 ~~t~~li~~~~~~~mk~gailIN~a 188 (333)
...-.++.++.+++||||++||+++
T Consensus 244 akaPkLvt~e~vk~MkpGsVivDVA 268 (371)
T COG0686 244 AKAPKLVTREMVKQMKPGSVIVDVA 268 (371)
T ss_pred CCCceehhHHHHHhcCCCcEEEEEE
Confidence 3445677888999999999999984
No 194
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=97.51 E-value=0.00031 Score=70.28 Aligned_cols=90 Identities=11% Similarity=0.217 Sum_probs=61.9
Q ss_pred ccCCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCCCH--HHHHhcC-cccc---ChhhhccCCCEEEEecCCchhhH
Q psy6348 95 ELYGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMVSV--EDAAKLN-IASL---GLEDIWPLADYITVHTPLIPQTK 167 (333)
Q Consensus 95 ~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~--~~a~~~g-v~~~---~l~ell~~aDvV~l~~P~t~~t~ 167 (333)
.+.|+++.|||.|.||+.+++.|...|. ++++++|+... ..+..++ .... ++.+.+.++|+|+.|++. ..
T Consensus 178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a---~~ 254 (414)
T PRK13940 178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNV---LE 254 (414)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCC---CC
Confidence 4678999999999999999999999996 79999997532 2334444 3333 456778999999999873 23
Q ss_pred hhccHHHHhccCCCcEEEEccC
Q psy6348 168 NLINAEVLKKCKKGVRVVNVAR 189 (333)
Q Consensus 168 ~li~~~~~~~mk~gailIN~aR 189 (333)
.+|..+... .+..++||.|=
T Consensus 255 ~vi~~~~~~--~~~~~~iDLav 274 (414)
T PRK13940 255 YIVTCKYVG--DKPRVFIDISI 274 (414)
T ss_pred eeECHHHhC--CCCeEEEEeCC
Confidence 445544432 12235555543
No 195
>PRK14030 glutamate dehydrogenase; Provisional
Probab=97.50 E-value=0.00087 Score=67.41 Aligned_cols=117 Identities=25% Similarity=0.295 Sum_probs=80.4
Q ss_pred ccccCCCEEEEEecChHHHHHHHHHhhCCCEEEE--------EcCCC-CHHHH---H---------------hc-Ccccc
Q psy6348 93 GTELYGKTLAVLGLGRIGREVALRMQAFGMKVIG--------FDPMV-SVEDA---A---------------KL-NIASL 144 (333)
Q Consensus 93 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~--------~d~~~-~~~~a---~---------------~~-gv~~~ 144 (333)
|.++.|+|+.|=|+|++|+..|+.|..+|.+|++ ||+.- +.+.. . .+ |.+.+
T Consensus 223 g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i 302 (445)
T PRK14030 223 GIDIKGKTVAISGFGNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFF 302 (445)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEc
Confidence 5679999999999999999999999999999999 88653 33221 0 11 33444
Q ss_pred Chhhhcc-CCCEEEEecCCchhhHhhccHHHHhccC-CCcEE-EEccCCcccchHhHHhhhhcCCceEEEeccCCC
Q psy6348 145 GLEDIWP-LADYITVHTPLIPQTKNLINAEVLKKCK-KGVRV-VNVARGGIVDENALLDSLKCGHCGGAALDVFCE 217 (333)
Q Consensus 145 ~l~ell~-~aDvV~l~~P~t~~t~~li~~~~~~~mk-~gail-IN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~ 217 (333)
+-++++. .||+++-| .+.+.|+.+....+. .++.+ +-.+-+ ++..++- +.|++..|. ++=|+..+
T Consensus 303 ~~~~~~~~~cDVliPc-----Al~n~I~~~na~~l~~~~ak~V~EgAN~-p~t~eA~-~iL~~rGI~-~vPD~~aN 370 (445)
T PRK14030 303 AGKKPWEQKVDIALPC-----ATQNELNGEDADKLIKNGVLCVAEVSNM-GCTAEAI-DKFIAAKQL-FAPGKAVN 370 (445)
T ss_pred CCccceeccccEEeec-----cccccCCHHHHHHHHHcCCeEEEeCCCC-CCCHHHH-HHHHHCCCE-EeCcceec
Confidence 5555554 59988877 467889888877773 33444 444555 6655543 667776665 55565443
No 196
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.50 E-value=0.00041 Score=66.21 Aligned_cols=80 Identities=21% Similarity=0.274 Sum_probs=66.8
Q ss_pred ccccCCCEEEEEecC-hHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhcc
Q psy6348 93 GTELYGKTLAVLGLG-RIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLIN 171 (333)
Q Consensus 93 g~~l~gktvGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~ 171 (333)
+.++.||++.|||-+ .+|+.+|..|...|+.|+.++.+. .++.+.+++||+|+.+++. .+++.
T Consensus 155 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T------------~~l~~~~~~ADIvVsAvGk----p~~i~ 218 (294)
T PRK14187 155 TRNLSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSAT------------RDLADYCSKADILVAAVGI----PNFVK 218 (294)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHhhCCCEEEEeCCCC------------CCHHHHHhhCCEEEEccCC----cCccC
Confidence 568999999999995 589999999999999999988642 2578889999999999974 45677
Q ss_pred HHHHhccCCCcEEEEccCCc
Q psy6348 172 AEVLKKCKKGVRVVNVARGG 191 (333)
Q Consensus 172 ~~~~~~mk~gailIN~aRg~ 191 (333)
.+. .|+|+++||++-..
T Consensus 219 ~~~---ik~gaiVIDVGin~ 235 (294)
T PRK14187 219 YSW---IKKGAIVIDVGINS 235 (294)
T ss_pred HHH---cCCCCEEEEecccc
Confidence 666 48999999997554
No 197
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.49 E-value=0.00041 Score=66.01 Aligned_cols=80 Identities=18% Similarity=0.174 Sum_probs=66.2
Q ss_pred ccccCCCEEEEEecC-hHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhcc
Q psy6348 93 GTELYGKTLAVLGLG-RIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLIN 171 (333)
Q Consensus 93 g~~l~gktvGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~ 171 (333)
+.++.||++.|||-+ .+|+.+|..|...|+.|..++.+. .++.+..++||+|+.++.. .+++.
T Consensus 154 ~i~l~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs~T------------~~L~~~~~~ADIvV~AvGk----p~~i~ 217 (288)
T PRK14171 154 EPNLTGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSKT------------HNLSSITSKADIVVAAIGS----PLKLT 217 (288)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC------------CCHHHHHhhCCEEEEccCC----CCccC
Confidence 457999999999995 589999999999999999887532 2578889999999999973 46777
Q ss_pred HHHHhccCCCcEEEEccCCc
Q psy6348 172 AEVLKKCKKGVRVVNVARGG 191 (333)
Q Consensus 172 ~~~~~~mk~gailIN~aRg~ 191 (333)
.+. .|+|+++||++-..
T Consensus 218 ~~~---vk~GavVIDvGin~ 234 (288)
T PRK14171 218 AEY---FNPESIVIDVGINR 234 (288)
T ss_pred HHH---cCCCCEEEEeeccc
Confidence 766 58999999998543
No 198
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=97.49 E-value=0.00046 Score=66.00 Aligned_cols=80 Identities=23% Similarity=0.260 Sum_probs=67.1
Q ss_pred ccccCCCEEEEEecC-hHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhcc
Q psy6348 93 GTELYGKTLAVLGLG-RIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLIN 171 (333)
Q Consensus 93 g~~l~gktvGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~ 171 (333)
+.++.||++.|||-+ .+|+.+|..|...|+.|+.++... -++++.+++||+|+.++.. .+++.
T Consensus 162 ~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~T------------~nl~~~~~~ADIvv~AvGk----~~~i~ 225 (299)
T PLN02516 162 GIPIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSRT------------PDPESIVREADIVIAAAGQ----AMMIK 225 (299)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC------------CCHHHHHhhCCEEEEcCCC----cCccC
Confidence 568999999999996 579999999999999999997632 2578899999999999864 36777
Q ss_pred HHHHhccCCCcEEEEccCCc
Q psy6348 172 AEVLKKCKKGVRVVNVARGG 191 (333)
Q Consensus 172 ~~~~~~mk~gailIN~aRg~ 191 (333)
.+. +|+|+++||++-..
T Consensus 226 ~~~---vk~gavVIDvGin~ 242 (299)
T PLN02516 226 GDW---IKPGAAVIDVGTNA 242 (299)
T ss_pred HHH---cCCCCEEEEeeccc
Confidence 766 58999999998554
No 199
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=97.47 E-value=0.00028 Score=57.42 Aligned_cols=102 Identities=22% Similarity=0.290 Sum_probs=64.1
Q ss_pred EEEEEecChHHHHHHHHHhhC--CCEEE-EEcCCCCH--HHHHhcCcccc-Chhhhcc--CCCEEEEecCCchhhHhhcc
Q psy6348 100 TLAVLGLGRIGREVALRMQAF--GMKVI-GFDPMVSV--EDAAKLNIASL-GLEDIWP--LADYITVHTPLIPQTKNLIN 171 (333)
Q Consensus 100 tvGIIGlG~IG~~vA~~l~~~--G~~V~-~~d~~~~~--~~a~~~gv~~~-~l~ell~--~aDvV~l~~P~t~~t~~li~ 171 (333)
++||||+|.+|+.....+... +.++. ++|+.... ..++..|+... ++++++. +.|+|++++|...... +-
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~~~h~~--~~ 79 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPPSSHAE--IA 79 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSGGGHHH--HH
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCCcchHH--HH
Confidence 799999999999998777765 56765 57886522 23455677644 7999998 7999999999533222 22
Q ss_pred HHHHhccCCC-cEEEEc-cCCcccchHhHHhhhhcCC
Q psy6348 172 AEVLKKCKKG-VRVVNV-ARGGIVDENALLDSLKCGH 206 (333)
Q Consensus 172 ~~~~~~mk~g-ailIN~-aRg~~vd~~aL~~aL~~g~ 206 (333)
...+ +.| .+++.- ---.+-+.+.|.++.++.+
T Consensus 80 ~~~l---~~g~~v~~EKP~~~~~~~~~~l~~~a~~~~ 113 (120)
T PF01408_consen 80 KKAL---EAGKHVLVEKPLALTLEEAEELVEAAKEKG 113 (120)
T ss_dssp HHHH---HTTSEEEEESSSSSSHHHHHHHHHHHHHHT
T ss_pred HHHH---HcCCEEEEEcCCcCCHHHHHHHHHHHHHhC
Confidence 3333 333 344432 1223444555555555443
No 200
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=97.47 E-value=0.00031 Score=71.54 Aligned_cols=71 Identities=20% Similarity=0.264 Sum_probs=52.5
Q ss_pred ccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-H-HHHhcCccccChhhh--ccCCCEEEEecCCc
Q psy6348 93 GTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-E-DAAKLNIASLGLEDI--WPLADYITVHTPLI 163 (333)
Q Consensus 93 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~-~a~~~gv~~~~l~el--l~~aDvV~l~~P~t 163 (333)
+.++.+++++|+|.|.+|++++..+...|++|+++++.... + .++..+....+++++ +.++|+|+.|+|..
T Consensus 327 ~~~~~~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~~~~~~~~~~~l~~~DiVInatP~g 401 (477)
T PRK09310 327 NIPLNNQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQGKAFPLESLPELHRIDIIINCLPPS 401 (477)
T ss_pred CCCcCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccceechhHhcccCCCCEEEEcCCCC
Confidence 45678999999999999999999999999999999986522 1 222223222333332 57899999999953
No 201
>PTZ00117 malate dehydrogenase; Provisional
Probab=97.45 E-value=0.00083 Score=64.91 Aligned_cols=117 Identities=21% Similarity=0.224 Sum_probs=73.0
Q ss_pred cCCCEEEEEecChHHHHHHHHHhhCC-CEEEEEcCCCCHHHHHhc---------Cc----cc-cChhhhccCCCEEEEec
Q psy6348 96 LYGKTLAVLGLGRIGREVALRMQAFG-MKVIGFDPMVSVEDAAKL---------NI----AS-LGLEDIWPLADYITVHT 160 (333)
Q Consensus 96 l~gktvGIIGlG~IG~~vA~~l~~~G-~~V~~~d~~~~~~~a~~~---------gv----~~-~~l~ell~~aDvV~l~~ 160 (333)
+..++|+|||.|.||..+|..+...| .++..||.......+..+ +. .. .+++ .+++||+|+++.
T Consensus 3 ~~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~ADiVVita 81 (319)
T PTZ00117 3 VKRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDSDVVVITA 81 (319)
T ss_pred CCCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCCCEEEECC
Confidence 45679999999999999999988878 689999986532212111 11 11 1444 779999999998
Q ss_pred --CCch-hhH--------hhcc--HHHHhccCCCcEEEEccCCcccchHhHHhhhh--cCCceEEE--ec
Q psy6348 161 --PLIP-QTK--------NLIN--AEVLKKCKKGVRVVNVARGGIVDENALLDSLK--CGHCGGAA--LD 213 (333)
Q Consensus 161 --P~t~-~t~--------~li~--~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~--~g~i~gaa--lD 213 (333)
|..+ .++ .++. .+.+....|.+++|+++-..-+-...+.+.-. ..++.|.+ +|
T Consensus 82 g~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~~~~s~~p~~rviG~gt~ld 151 (319)
T PTZ00117 82 GVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVFQEKSGIPSNKICGMAGVLD 151 (319)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHHHHhhCCCcccEEEecchHH
Confidence 4433 111 1110 12334456788999987654444444544432 45676665 55
No 202
>PLN02477 glutamate dehydrogenase
Probab=97.45 E-value=0.0044 Score=61.91 Aligned_cols=116 Identities=19% Similarity=0.231 Sum_probs=77.9
Q ss_pred ccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEE-cCC-------C-CHHHHHh----c-------CccccChhhhc-c
Q psy6348 93 GTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGF-DPM-------V-SVEDAAK----L-------NIASLGLEDIW-P 151 (333)
Q Consensus 93 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~-d~~-------~-~~~~a~~----~-------gv~~~~l~ell-~ 151 (333)
|.++.|+|+.|.|||++|+.+|+.|...|.+|++. |.+ - +.+...+ . +.+.++.++++ .
T Consensus 201 g~~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~i~~~e~l~~ 280 (410)
T PLN02477 201 GKSIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDPIDPDDILVE 280 (410)
T ss_pred CCCccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceEecCccceec
Confidence 55789999999999999999999999999999953 432 1 2222211 1 12233444443 4
Q ss_pred CCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCC
Q psy6348 152 LADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCE 217 (333)
Q Consensus 152 ~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~ 217 (333)
+||+++-|. ..+.|+.+...+++- .+++-.+-+.+ +.+--+.|++..|. ++=|+.-+
T Consensus 281 ~~DvliP~A-----l~~~I~~~na~~i~a-k~I~egAN~p~--t~ea~~~L~~rGI~-~~PD~~aN 337 (410)
T PLN02477 281 PCDVLIPAA-----LGGVINKENAADVKA-KFIVEAANHPT--DPEADEILRKKGVV-VLPDIYAN 337 (410)
T ss_pred cccEEeecc-----ccccCCHhHHHHcCC-cEEEeCCCCCC--CHHHHHHHHHCCcE-EEChHHhC
Confidence 799998773 567888888888753 46666666766 33445777777765 55555433
No 203
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.45 E-value=0.00054 Score=65.00 Aligned_cols=80 Identities=19% Similarity=0.185 Sum_probs=66.7
Q ss_pred ccccCCCEEEEEecC-hHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhcc
Q psy6348 93 GTELYGKTLAVLGLG-RIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLIN 171 (333)
Q Consensus 93 g~~l~gktvGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~ 171 (333)
+.++.||++.|||-+ .+|+.+|..|...|..|..++.+. .++.+..++||+|+.+++. .+++.
T Consensus 152 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs~T------------~nl~~~~~~ADIvI~AvGk----~~~i~ 215 (282)
T PRK14182 152 RVDPKGKRALVVGRSNIVGKPMAMMLLERHATVTIAHSRT------------ADLAGEVGRADILVAAIGK----AELVK 215 (282)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC------------CCHHHHHhhCCEEEEecCC----cCccC
Confidence 567999999999995 589999999999999999987642 2577888999999999973 55777
Q ss_pred HHHHhccCCCcEEEEccCCc
Q psy6348 172 AEVLKKCKKGVRVVNVARGG 191 (333)
Q Consensus 172 ~~~~~~mk~gailIN~aRg~ 191 (333)
.+. .|+|+++||++-..
T Consensus 216 ~~~---ik~gaiVIDvGin~ 232 (282)
T PRK14182 216 GAW---VKEGAVVIDVGMNR 232 (282)
T ss_pred HHH---cCCCCEEEEeecee
Confidence 766 58999999998554
No 204
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.45 E-value=0.00051 Score=65.25 Aligned_cols=110 Identities=25% Similarity=0.299 Sum_probs=81.2
Q ss_pred ccccCCCEEEEEecC-hHHHHHHHHHhh--CCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhh
Q psy6348 93 GTELYGKTLAVLGLG-RIGREVALRMQA--FGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNL 169 (333)
Q Consensus 93 g~~l~gktvGIIGlG-~IG~~vA~~l~~--~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~l 169 (333)
+.++.||++.|||-+ .+|+.+|..|.. .++.|..+.... .++.+.+++||+|+.+++. .++
T Consensus 153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~T------------~~l~~~~k~ADIvV~AvGk----p~~ 216 (284)
T PRK14193 153 DVELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTGT------------RDLAAHTRRADIIVAAAGV----AHL 216 (284)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCCC------------CCHHHHHHhCCEEEEecCC----cCc
Confidence 568999999999985 689999999987 789999987632 2578889999999999974 357
Q ss_pred ccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCccchhhcCCCcEEEccCCCCCcH
Q psy6348 170 INAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTK 245 (333)
Q Consensus 170 i~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~L~~~pnvi~TPHi~~~t~ 245 (333)
+..+. +|+|+++||++...+ .+|++.| ||- .+ .. ... -.+||--||.-.
T Consensus 217 i~~~~---ik~GavVIDvGin~~----------~~gkl~G---Dvd-~~-v~--------~~a-~~iTPVPGGVGp 265 (284)
T PRK14193 217 VTADM---VKPGAAVLDVGVSRA----------GDGKLVG---DVH-PD-VW--------EVA-GAVSPNPGGVGP 265 (284)
T ss_pred cCHHH---cCCCCEEEEcccccc----------CCCcEEe---ecC-Hh-HH--------hhC-CEEeCCCCChhH
Confidence 77766 589999999986653 2455543 664 11 11 111 268998777544
No 205
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=97.45 E-value=0.00056 Score=56.29 Aligned_cols=87 Identities=18% Similarity=0.321 Sum_probs=54.7
Q ss_pred EEEEEec-ChHHHHHHHHHhhC-CCEEEEE-cCCC-CHHHHHhcC--cc-----ccChhhhc-cCCCEEEEecCCchhhH
Q psy6348 100 TLAVLGL-GRIGREVALRMQAF-GMKVIGF-DPMV-SVEDAAKLN--IA-----SLGLEDIW-PLADYITVHTPLIPQTK 167 (333)
Q Consensus 100 tvGIIGl-G~IG~~vA~~l~~~-G~~V~~~-d~~~-~~~~a~~~g--v~-----~~~l~ell-~~aDvV~l~~P~t~~t~ 167 (333)
++||+|. |.+|+.++..+... ++++.+. ++.. ........+ +. ..+.+++. .++|+|++|+|... +.
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~-~~ 79 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHGV-SK 79 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCcHH-HH
Confidence 5899995 99999999988874 7887776 4322 111222111 11 11222222 58999999999643 33
Q ss_pred hhccHHHHhccCCCcEEEEcc
Q psy6348 168 NLINAEVLKKCKKGVRVVNVA 188 (333)
Q Consensus 168 ~li~~~~~~~mk~gailIN~a 188 (333)
..+. .....+++|.++|+++
T Consensus 80 ~~~~-~~~~~~~~g~~viD~s 99 (122)
T smart00859 80 EIAP-LLPKAAEAGVKVIDLS 99 (122)
T ss_pred HHHH-HHHhhhcCCCEEEECC
Confidence 3332 2345579999999996
No 206
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=97.44 E-value=0.00046 Score=67.35 Aligned_cols=80 Identities=25% Similarity=0.239 Sum_probs=66.7
Q ss_pred ccccCCCEEEEEecC-hHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhcc
Q psy6348 93 GTELYGKTLAVLGLG-RIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLIN 171 (333)
Q Consensus 93 g~~l~gktvGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~ 171 (333)
+.++.||++.|||-+ .+|+.+|..|...|..|..+.... .++.+.+++||+|+.++.. .+++.
T Consensus 226 ~i~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~T------------~nl~~~~r~ADIVIsAvGk----p~~i~ 289 (364)
T PLN02616 226 NVEIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT------------KNPEEITREADIIISAVGQ----PNMVR 289 (364)
T ss_pred CCCCCCCEEEEECCCccccHHHHHHHHHCCCeEEEeCCCC------------CCHHHHHhhCCEEEEcCCC----cCcCC
Confidence 568999999999995 589999999999999999987532 2578889999999999963 45677
Q ss_pred HHHHhccCCCcEEEEccCCc
Q psy6348 172 AEVLKKCKKGVRVVNVARGG 191 (333)
Q Consensus 172 ~~~~~~mk~gailIN~aRg~ 191 (333)
.+. .|+|+++||++-..
T Consensus 290 ~d~---vK~GAvVIDVGIn~ 306 (364)
T PLN02616 290 GSW---IKPGAVVIDVGINP 306 (364)
T ss_pred HHH---cCCCCEEEeccccc
Confidence 766 58999999998544
No 207
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=97.42 E-value=0.00049 Score=66.81 Aligned_cols=80 Identities=25% Similarity=0.331 Sum_probs=66.5
Q ss_pred ccccCCCEEEEEecC-hHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhcc
Q psy6348 93 GTELYGKTLAVLGLG-RIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLIN 171 (333)
Q Consensus 93 g~~l~gktvGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~ 171 (333)
+.++.||++.|||-+ .+|+.+|..|...|+.|..+..+. -++++..++||+|+.+++. .+++.
T Consensus 209 ~i~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~T------------~nl~~~~~~ADIvIsAvGk----p~~v~ 272 (345)
T PLN02897 209 GVEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFT------------KDPEQITRKADIVIAAAGI----PNLVR 272 (345)
T ss_pred CCCCCCCEEEEECCCccccHHHHHHHHHCCCEEEEEcCCC------------CCHHHHHhhCCEEEEccCC----cCccC
Confidence 568999999999996 579999999999999999887542 2477889999999999974 45677
Q ss_pred HHHHhccCCCcEEEEccCCc
Q psy6348 172 AEVLKKCKKGVRVVNVARGG 191 (333)
Q Consensus 172 ~~~~~~mk~gailIN~aRg~ 191 (333)
.+. +|+|+++||++--.
T Consensus 273 ~d~---vk~GavVIDVGin~ 289 (345)
T PLN02897 273 GSW---LKPGAVVIDVGTTP 289 (345)
T ss_pred HHH---cCCCCEEEEccccc
Confidence 666 58999999998654
No 208
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=97.42 E-value=0.00068 Score=58.94 Aligned_cols=69 Identities=23% Similarity=0.178 Sum_probs=52.1
Q ss_pred ccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcC-cccc--Ch-hhhccCCCEEEEecCC
Q psy6348 93 GTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLN-IASL--GL-EDIWPLADYITVHTPL 162 (333)
Q Consensus 93 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g-v~~~--~l-~ell~~aDvV~l~~P~ 162 (333)
..+|.|+++.|||.|.+|...++.|...|.+|.+++|....+.. +++ +++. .+ ++-+.++|+|+.++..
T Consensus 8 ~l~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~~~~~l~-~l~~i~~~~~~~~~~dl~~a~lViaaT~d 80 (157)
T PRK06719 8 MFNLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPEICKEMK-ELPYITWKQKTFSNDDIKDAHLIYAATNQ 80 (157)
T ss_pred EEEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCccCHHHH-hccCcEEEecccChhcCCCceEEEECCCC
Confidence 46899999999999999999999999999999999987655432 232 2221 22 2346789999888763
No 209
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.42 E-value=0.00061 Score=64.80 Aligned_cols=80 Identities=20% Similarity=0.258 Sum_probs=65.9
Q ss_pred ccccCCCEEEEEecC-hHHHHHHHHHhhC----CCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhH
Q psy6348 93 GTELYGKTLAVLGLG-RIGREVALRMQAF----GMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTK 167 (333)
Q Consensus 93 g~~l~gktvGIIGlG-~IG~~vA~~l~~~----G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~ 167 (333)
+.++.||++.|||-+ .+|+.+|..|... +..|..+.... .++.+.+++||+|+.+++. .
T Consensus 148 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~T------------~~l~~~~~~ADIvV~AvG~----p 211 (287)
T PRK14181 148 EIPLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQS------------ENLTEILKTADIIIAAIGV----P 211 (287)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCCC------------CCHHHHHhhCCEEEEccCC----c
Confidence 568999999999996 5899999999887 78999887532 2578889999999999974 3
Q ss_pred hhccHHHHhccCCCcEEEEccCCc
Q psy6348 168 NLINAEVLKKCKKGVRVVNVARGG 191 (333)
Q Consensus 168 ~li~~~~~~~mk~gailIN~aRg~ 191 (333)
+++..+. +|+|+++||++-..
T Consensus 212 ~~i~~~~---ik~GavVIDvGin~ 232 (287)
T PRK14181 212 LFIKEEM---IAEKAVIVDVGTSR 232 (287)
T ss_pred CccCHHH---cCCCCEEEEecccc
Confidence 5677766 58999999998655
No 210
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=97.39 E-value=0.00066 Score=65.99 Aligned_cols=85 Identities=31% Similarity=0.336 Sum_probs=61.6
Q ss_pred CCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHhcCcccc-C------hhhhccCCCEEEEecCCchhhHh
Q psy6348 97 YGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV-SVEDAAKLNIASL-G------LEDIWPLADYITVHTPLIPQTKN 168 (333)
Q Consensus 97 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~gv~~~-~------l~ell~~aDvV~l~~P~t~~t~~ 168 (333)
.|++|+|+|+|-.|..-.+.++++|++|+++|+.. ..+.++++|...+ + ++++-+.+|+++.++| . .+-
T Consensus 166 pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~-~~~- 242 (339)
T COG1064 166 PGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-P-ATL- 242 (339)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-h-hhH-
Confidence 48999999999999999999999999999999987 4567788876432 1 1223333888888887 2 222
Q ss_pred hccHHHHhccCCCcEEEEc
Q psy6348 169 LINAEVLKKCKKGVRVVNV 187 (333)
Q Consensus 169 li~~~~~~~mk~gailIN~ 187 (333)
...++.++++..++-+
T Consensus 243 ---~~~l~~l~~~G~~v~v 258 (339)
T COG1064 243 ---EPSLKALRRGGTLVLV 258 (339)
T ss_pred ---HHHHHHHhcCCEEEEE
Confidence 3455667777666644
No 211
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=97.37 E-value=0.00078 Score=65.26 Aligned_cols=86 Identities=19% Similarity=0.144 Sum_probs=62.9
Q ss_pred CCCEEEEEecChHHHHHHHHHh-hCCC-EEEEEcCCCCH--HHHHh----cCccc---cChhhhccCCCEEEEecCCchh
Q psy6348 97 YGKTLAVLGLGRIGREVALRMQ-AFGM-KVIGFDPMVSV--EDAAK----LNIAS---LGLEDIWPLADYITVHTPLIPQ 165 (333)
Q Consensus 97 ~gktvGIIGlG~IG~~vA~~l~-~~G~-~V~~~d~~~~~--~~a~~----~gv~~---~~l~ell~~aDvV~l~~P~t~~ 165 (333)
..++++|||.|.+|+..++.+. ..+. +|.+|+|+... +.+++ .|+.. .++++.+.+||+|+.++|..
T Consensus 128 ~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~s~-- 205 (326)
T TIGR02992 128 DSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTPSE-- 205 (326)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecCCC--
Confidence 3579999999999999999886 4674 69999997633 22222 24433 26888999999999999853
Q ss_pred hHhhccHHHHhccCCCcEEEEcc
Q psy6348 166 TKNLINAEVLKKCKKGVRVVNVA 188 (333)
Q Consensus 166 t~~li~~~~~~~mk~gailIN~a 188 (333)
..++..+. +|+|+.+..++
T Consensus 206 -~p~i~~~~---l~~g~~i~~vg 224 (326)
T TIGR02992 206 -TPILHAEW---LEPGQHVTAMG 224 (326)
T ss_pred -CcEecHHH---cCCCcEEEeeC
Confidence 35665544 68998877665
No 212
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=97.36 E-value=0.0011 Score=62.31 Aligned_cols=101 Identities=20% Similarity=0.222 Sum_probs=63.2
Q ss_pred CEEEEEecChHHHHHHHHHhhC---CCEEE-EEcCCCCHHHHHhcCcccc-Chhhh-ccCCCEEEEecCCchhhHhhccH
Q psy6348 99 KTLAVLGLGRIGREVALRMQAF---GMKVI-GFDPMVSVEDAAKLNIASL-GLEDI-WPLADYITVHTPLIPQTKNLINA 172 (333)
Q Consensus 99 ktvGIIGlG~IG~~vA~~l~~~---G~~V~-~~d~~~~~~~a~~~gv~~~-~l~el-l~~aDvV~l~~P~t~~t~~li~~ 172 (333)
+||||||||.||+.+++.+..- ++++. +|++...........+..+ +++++ ..+.|+|+=|..- + .+-+
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~~~~~~~l~~ll~~~~DlVVE~A~~--~---av~e 77 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGRVALLDGLPGLLAWRPDLVVEAAGQ--Q---AIAE 77 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhccCcccCCHHHHhhcCCCEEEECCCH--H---HHHH
Confidence 5899999999999999988652 35544 4666442211111123444 69997 5789999988752 2 1222
Q ss_pred HHHhccCCCcEEEEccCCcccc---hHhHHhhhhc
Q psy6348 173 EVLKKCKKGVRVVNVARGGIVD---ENALLDSLKC 204 (333)
Q Consensus 173 ~~~~~mk~gailIN~aRg~~vd---~~aL~~aL~~ 204 (333)
--.+-++.|.-++=.|-|.+.| ++.|.++.++
T Consensus 78 ~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~ 112 (267)
T PRK13301 78 HAEGCLTAGLDMIICSAGALADDALRARLIAAAEA 112 (267)
T ss_pred HHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHh
Confidence 2223356677777778888887 4445555544
No 213
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=97.36 E-value=0.00042 Score=65.43 Aligned_cols=114 Identities=25% Similarity=0.307 Sum_probs=83.4
Q ss_pred CccccCCCEEEEEecCh-HHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhc
Q psy6348 92 TGTELYGKTLAVLGLGR-IGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLI 170 (333)
Q Consensus 92 ~g~~l~gktvGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li 170 (333)
.+.+++||++.|||-++ +|+.+|..|...++.|.+++.+. .++.+..++||+|+.++-. .+++
T Consensus 150 ~~i~l~Gk~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T------------~~l~~~~k~ADIvv~AvG~----p~~i 213 (283)
T COG0190 150 YGIDLRGKNVVVVGRSNIVGKPLALLLLNANATVTVCHSRT------------KDLASITKNADIVVVAVGK----PHFI 213 (283)
T ss_pred hCCCCCCCEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCC------------CCHHHHhhhCCEEEEecCC----cccc
Confidence 35689999999999986 69999999999999999988743 2577888999999999853 5666
Q ss_pred cHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCccchhhcCCCcEEEccCCCCCcHHH
Q psy6348 171 NAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEA 247 (333)
Q Consensus 171 ~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~L~~~pnvi~TPHi~~~t~ea 247 (333)
..+. .|+|+++|+++--.+-+ +++. =||-.++. ....-.+||=-||.-.=.
T Consensus 214 ~~d~---vk~gavVIDVGinrv~~----------~kl~---GDVdf~~v----------~~~a~~iTPVPGGVGPmT 264 (283)
T COG0190 214 KADM---VKPGAVVIDVGINRVND----------GKLV---GDVDFDSV----------KEKASAITPVPGGVGPMT 264 (283)
T ss_pred cccc---ccCCCEEEecCCccccC----------CceE---eeccHHHH----------HHhhcccCCCCCccCHHH
Confidence 6554 58999999997665433 5554 46622221 122346889888765533
No 214
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.34 E-value=0.00078 Score=64.40 Aligned_cols=80 Identities=21% Similarity=0.220 Sum_probs=65.3
Q ss_pred ccccCCCEEEEEecC-hHHHHHHHHHhh----CCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhH
Q psy6348 93 GTELYGKTLAVLGLG-RIGREVALRMQA----FGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTK 167 (333)
Q Consensus 93 g~~l~gktvGIIGlG-~IG~~vA~~l~~----~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~ 167 (333)
+.++.||++.|||-+ .+|+.+|..|.. .|..|..+.... .++.+.+++||+|+.+++..
T Consensus 154 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~t------------~~l~~~~~~ADIvI~Avg~~---- 217 (295)
T PRK14174 154 NIETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSAT------------KDIPSYTRQADILIAAIGKA---- 217 (295)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCCc------------hhHHHHHHhCCEEEEecCcc----
Confidence 568999999999995 589999999876 588988877532 24788899999999999632
Q ss_pred hhccHHHHhccCCCcEEEEccCCc
Q psy6348 168 NLINAEVLKKCKKGVRVVNVARGG 191 (333)
Q Consensus 168 ~li~~~~~~~mk~gailIN~aRg~ 191 (333)
++|..+.+ |+|+++||++-..
T Consensus 218 ~li~~~~v---k~GavVIDVgi~~ 238 (295)
T PRK14174 218 RFITADMV---KPGAVVIDVGINR 238 (295)
T ss_pred CccCHHHc---CCCCEEEEeeccc
Confidence 67888776 9999999997544
No 215
>PRK06444 prephenate dehydrogenase; Provisional
Probab=97.31 E-value=0.00068 Score=61.18 Aligned_cols=61 Identities=21% Similarity=0.302 Sum_probs=47.3
Q ss_pred EEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhccHHHHhcc
Q psy6348 100 TLAVLGL-GRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKC 178 (333)
Q Consensus 100 tvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~m 178 (333)
+++|||- |.||+.++..+++.|+.|. +++||+|++|+|. ..+..++. .+
T Consensus 2 ~~~iiG~~G~mG~~~~~~~~~~g~~v~------------------------~~~~DlVilavPv-~~~~~~i~-----~~ 51 (197)
T PRK06444 2 MEIIIGKNGRLGRVLCSILDDNGLGVY------------------------IKKADHAFLSVPI-DAALNYIE-----SY 51 (197)
T ss_pred EEEEEecCCcHHHHHHHHHHhCCCEEE------------------------ECCCCEEEEeCCH-HHHHHHHH-----Hh
Confidence 7999998 9999999999999999985 3689999999994 34444442 22
Q ss_pred CCCcEEEEccCCcc
Q psy6348 179 KKGVRVVNVARGGI 192 (333)
Q Consensus 179 k~gailIN~aRg~~ 192 (333)
. .++++++.-+-
T Consensus 52 ~--~~v~Dv~SvK~ 63 (197)
T PRK06444 52 D--NNFVEISSVKW 63 (197)
T ss_pred C--CeEEeccccCH
Confidence 2 37889977443
No 216
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=97.31 E-value=0.00083 Score=62.60 Aligned_cols=115 Identities=23% Similarity=0.286 Sum_probs=77.4
Q ss_pred cccCCCEEEEEecChHHHHHHHHHhhCCCEEEEE--------cCCC-CHHHHH----hcCc--cc-----------cChh
Q psy6348 94 TELYGKTLAVLGLGRIGREVALRMQAFGMKVIGF--------DPMV-SVEDAA----KLNI--AS-----------LGLE 147 (333)
Q Consensus 94 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~--------d~~~-~~~~a~----~~gv--~~-----------~~l~ 147 (333)
.++.|+++.|-|+|++|+.+|+.|...|++|++. ||.- ..+... +.+. .. .+-+
T Consensus 28 ~~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 107 (244)
T PF00208_consen 28 DSLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLESPDGAEYIPND 107 (244)
T ss_dssp HSSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHH
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHHHHHHHHhCCcccccccccccceeEeccc
Confidence 3699999999999999999999999999999875 6543 222221 2222 11 1221
Q ss_pred -hhc-cCCCEEEEecCCchhhHhhccHHHHh-ccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccC
Q psy6348 148 -DIW-PLADYITVHTPLIPQTKNLINAEVLK-KCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVF 215 (333)
Q Consensus 148 -ell-~~aDvV~l~~P~t~~t~~li~~~~~~-~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~ 215 (333)
+++ .+||+++.|. ..+.|+.+... .++.++.+|--+-...+..++.. .|++..|. ..=|..
T Consensus 108 ~~il~~~~DiliP~A-----~~~~I~~~~~~~~i~~~akiIvegAN~p~t~~a~~-~L~~rGI~-viPD~~ 171 (244)
T PF00208_consen 108 DEILSVDCDILIPCA-----LGNVINEDNAPSLIKSGAKIIVEGANGPLTPEADE-ILRERGIL-VIPDFL 171 (244)
T ss_dssp CHGGTSSSSEEEEES-----SSTSBSCHHHCHCHHTT-SEEEESSSSSBSHHHHH-HHHHTT-E-EE-HHH
T ss_pred cccccccccEEEEcC-----CCCeeCHHHHHHHHhccCcEEEeCcchhccHHHHH-HHHHCCCE-EEcchh
Confidence 555 5799999984 36778888887 88877766666655555666655 77777775 555553
No 217
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.30 E-value=0.00097 Score=63.60 Aligned_cols=80 Identities=24% Similarity=0.238 Sum_probs=64.9
Q ss_pred ccccCCCEEEEEecC-hHHHHHHHHHhhC----CCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhH
Q psy6348 93 GTELYGKTLAVLGLG-RIGREVALRMQAF----GMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTK 167 (333)
Q Consensus 93 g~~l~gktvGIIGlG-~IG~~vA~~l~~~----G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~ 167 (333)
+.++.||++.|||-+ .+|+.+|..|... +..|..+.... .++.+..++||+|+.+++. .
T Consensus 152 ~i~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T------------~nl~~~~~~ADIvIsAvGk----p 215 (293)
T PRK14185 152 HIETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRS------------KNLKKECLEADIIIAALGQ----P 215 (293)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCCC------------CCHHHHHhhCCEEEEccCC----c
Confidence 567999999999995 5899999999876 68999886532 2578889999999999974 4
Q ss_pred hhccHHHHhccCCCcEEEEccCCc
Q psy6348 168 NLINAEVLKKCKKGVRVVNVARGG 191 (333)
Q Consensus 168 ~li~~~~~~~mk~gailIN~aRg~ 191 (333)
+++..+. .|+|+++||++-..
T Consensus 216 ~~i~~~~---vk~gavVIDvGin~ 236 (293)
T PRK14185 216 EFVKADM---VKEGAVVIDVGTTR 236 (293)
T ss_pred CccCHHH---cCCCCEEEEecCcc
Confidence 5676655 58999999998654
No 218
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.29 E-value=0.00095 Score=63.81 Aligned_cols=80 Identities=25% Similarity=0.297 Sum_probs=65.3
Q ss_pred ccccCCCEEEEEecC-hHHHHHHHHHhhC----CCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhH
Q psy6348 93 GTELYGKTLAVLGLG-RIGREVALRMQAF----GMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTK 167 (333)
Q Consensus 93 g~~l~gktvGIIGlG-~IG~~vA~~l~~~----G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~ 167 (333)
+.++.||++.|||-+ .+|+.+|..|... +..|..+.... .++.+.+++||+|+.++.. .
T Consensus 156 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~T------------~~l~~~~~~ADIvVsAvGk----p 219 (297)
T PRK14168 156 GVETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTRS------------KNLARHCQRADILIVAAGV----P 219 (297)
T ss_pred CCCCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCCC------------cCHHHHHhhCCEEEEecCC----c
Confidence 678999999999995 6899999999876 78998876532 2577889999999999863 4
Q ss_pred hhccHHHHhccCCCcEEEEccCCc
Q psy6348 168 NLINAEVLKKCKKGVRVVNVARGG 191 (333)
Q Consensus 168 ~li~~~~~~~mk~gailIN~aRg~ 191 (333)
+++..+. +|+|+++||++-..
T Consensus 220 ~~i~~~~---ik~gavVIDvGin~ 240 (297)
T PRK14168 220 NLVKPEW---IKPGATVIDVGVNR 240 (297)
T ss_pred CccCHHH---cCCCCEEEecCCCc
Confidence 5677665 58999999998655
No 219
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=97.28 E-value=0.00092 Score=65.05 Aligned_cols=95 Identities=14% Similarity=0.013 Sum_probs=61.2
Q ss_pred ccCCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhccHH
Q psy6348 95 ELYGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAE 173 (333)
Q Consensus 95 ~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~ 173 (333)
.+.||++.|||.|.||+.+|+.|...|. +|++.+|+......... ....-++..++|+|+.+.-.|....-.+..+
T Consensus 171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~~~~~~~---~~~~~~~~~~~DvVIs~t~~Tas~~p~i~~~ 247 (338)
T PRK00676 171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLTLPYRTV---VREELSFQDPYDVIFFGSSESAYAFPHLSWE 247 (338)
T ss_pred CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccccchhhh---hhhhhhcccCCCEEEEcCCcCCCCCceeeHH
Confidence 4789999999999999999999999995 69999997632111110 0011144578999998743233333445555
Q ss_pred HHhccCCCcEEEEccCCccc
Q psy6348 174 VLKKCKKGVRVVNVARGGIV 193 (333)
Q Consensus 174 ~~~~mk~gailIN~aRg~~v 193 (333)
.++..++ -++||.+=..=|
T Consensus 248 ~~~~~~~-r~~iDLAvPRdI 266 (338)
T PRK00676 248 SLADIPD-RIVFDFNVPRTF 266 (338)
T ss_pred HHhhccC-cEEEEecCCCCC
Confidence 5544332 377777544433
No 220
>PRK06823 ornithine cyclodeaminase; Validated
Probab=97.28 E-value=0.0014 Score=63.32 Aligned_cols=88 Identities=17% Similarity=0.241 Sum_probs=64.7
Q ss_pred CCEEEEEecChHHHHHHHHHhh-CC-CEEEEEcCCCCHHH-----HHhcCccc--c-ChhhhccCCCEEEEecCCchhhH
Q psy6348 98 GKTLAVLGLGRIGREVALRMQA-FG-MKVIGFDPMVSVED-----AAKLNIAS--L-GLEDIWPLADYITVHTPLIPQTK 167 (333)
Q Consensus 98 gktvGIIGlG~IG~~vA~~l~~-~G-~~V~~~d~~~~~~~-----a~~~gv~~--~-~l~ell~~aDvV~l~~P~t~~t~ 167 (333)
-++++|||.|..++..++.+.. +. -+|.+|+|+..... .++.++.. + +.++++++||+|+.++| .+.
T Consensus 128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~---s~~ 204 (315)
T PRK06823 128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTP---SRE 204 (315)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecC---CCC
Confidence 4699999999999998877654 23 38999999873321 12224433 3 68999999999999987 445
Q ss_pred hhccHHHHhccCCCcEEEEccCCc
Q psy6348 168 NLINAEVLKKCKKGVRVVNVARGG 191 (333)
Q Consensus 168 ~li~~~~~~~mk~gailIN~aRg~ 191 (333)
-++..+. +|+|+.++.++.-.
T Consensus 205 P~~~~~~---l~~G~hi~~iGs~~ 225 (315)
T PRK06823 205 PLLQAED---IQPGTHITAVGADS 225 (315)
T ss_pred ceeCHHH---cCCCcEEEecCCCC
Confidence 6776654 68999999998543
No 221
>PRK08618 ornithine cyclodeaminase; Validated
Probab=97.27 E-value=0.00094 Score=64.65 Aligned_cols=87 Identities=22% Similarity=0.193 Sum_probs=63.3
Q ss_pred CCCEEEEEecChHHHHHHHHHh-hCCC-EEEEEcCCCCH--HHHH----hcCcc---ccChhhhccCCCEEEEecCCchh
Q psy6348 97 YGKTLAVLGLGRIGREVALRMQ-AFGM-KVIGFDPMVSV--EDAA----KLNIA---SLGLEDIWPLADYITVHTPLIPQ 165 (333)
Q Consensus 97 ~gktvGIIGlG~IG~~vA~~l~-~~G~-~V~~~d~~~~~--~~a~----~~gv~---~~~l~ell~~aDvV~l~~P~t~~ 165 (333)
..++++|||.|.+|+..+..+. ..+. +|.+||++... +.++ +.+++ +.+++++++++|+|+.++|..
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~-- 203 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAK-- 203 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCC--
Confidence 4679999999999999887664 4454 78899997632 1222 23443 236889999999999999844
Q ss_pred hHhhccHHHHhccCCCcEEEEccCC
Q psy6348 166 TKNLINAEVLKKCKKGVRVVNVARG 190 (333)
Q Consensus 166 t~~li~~~~~~~mk~gailIN~aRg 190 (333)
.-++. +.+|+|+.++.++.-
T Consensus 204 -~p~i~----~~l~~G~hV~~iGs~ 223 (325)
T PRK08618 204 -TPVFS----EKLKKGVHINAVGSF 223 (325)
T ss_pred -CcchH----HhcCCCcEEEecCCC
Confidence 34554 456999999999764
No 222
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.25 E-value=0.00099 Score=63.38 Aligned_cols=79 Identities=25% Similarity=0.320 Sum_probs=65.4
Q ss_pred ccccCCCEEEEEecC-hHHHHHHHHHhh----CCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhH
Q psy6348 93 GTELYGKTLAVLGLG-RIGREVALRMQA----FGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTK 167 (333)
Q Consensus 93 g~~l~gktvGIIGlG-~IG~~vA~~l~~----~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~ 167 (333)
+.++.||++.|||-+ .+|+.+|..|.. .+..|..++... .++.+.+++||+|+.+++. .
T Consensus 152 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~t------------~~l~~~~~~ADIVI~AvG~----p 215 (286)
T PRK14184 152 GLSPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRT------------PDLAEECREADFLFVAIGR----P 215 (286)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCCc------------hhHHHHHHhCCEEEEecCC----C
Confidence 568999999999995 589999999988 789999887532 2578899999999999953 5
Q ss_pred hhccHHHHhccCCCcEEEEccCC
Q psy6348 168 NLINAEVLKKCKKGVRVVNVARG 190 (333)
Q Consensus 168 ~li~~~~~~~mk~gailIN~aRg 190 (333)
+++..+.+ |+|+++||++-.
T Consensus 216 ~li~~~~v---k~GavVIDVGi~ 235 (286)
T PRK14184 216 RFVTADMV---KPGAVVVDVGIN 235 (286)
T ss_pred CcCCHHHc---CCCCEEEEeeee
Confidence 66777665 999999999743
No 223
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.25 E-value=0.0012 Score=62.82 Aligned_cols=69 Identities=25% Similarity=0.265 Sum_probs=50.6
Q ss_pred cccCCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCCCHH--HHHhcC-----cccc---ChhhhccCCCEEEEecCC
Q psy6348 94 TELYGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMVSVE--DAAKLN-----IASL---GLEDIWPLADYITVHTPL 162 (333)
Q Consensus 94 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~~--~a~~~g-----v~~~---~l~ell~~aDvV~l~~P~ 162 (333)
..+.++++.|+|.|.+|++++..|...|. +|+++||..... .+++++ .... ++.+.++++|+|+.++|.
T Consensus 123 ~~~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp~ 202 (284)
T PRK12549 123 PDASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALAAADGLVHATPT 202 (284)
T ss_pred cCccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECCcC
Confidence 35778999999999999999999999998 799999975321 222221 1111 334567789999999884
No 224
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=97.25 E-value=0.00076 Score=65.00 Aligned_cols=90 Identities=23% Similarity=0.208 Sum_probs=53.8
Q ss_pred CEEEEEecChHHHHHHHHHhh-CCC-EEEEEcCCCCH-H-HH---HhcCccc--c-ChhhhccCCCEEEEecCCchhhHh
Q psy6348 99 KTLAVLGLGRIGREVALRMQA-FGM-KVIGFDPMVSV-E-DA---AKLNIAS--L-GLEDIWPLADYITVHTPLIPQTKN 168 (333)
Q Consensus 99 ktvGIIGlG~IG~~vA~~l~~-~G~-~V~~~d~~~~~-~-~a---~~~gv~~--~-~l~ell~~aDvV~l~~P~t~~t~~ 168 (333)
+++||||.|..+..-++.+.+ ++. +|.+|+|+... + .+ .++++.. + +.++++++||+|+.++|.+..+ -
T Consensus 129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~~~~-P 207 (313)
T PF02423_consen 129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTATPSTTPA-P 207 (313)
T ss_dssp -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE----SSEE-E
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEccCCCCCC-c
Confidence 589999999999999887754 555 79999997622 1 11 2234432 2 7999999999999998854322 5
Q ss_pred hccHHHHhccCCCcEEEEccCCcc
Q psy6348 169 LINAEVLKKCKKGVRVVNVARGGI 192 (333)
Q Consensus 169 li~~~~~~~mk~gailIN~aRg~~ 192 (333)
++..+ .+|+|+.++.++....
T Consensus 208 ~~~~~---~l~~g~hi~~iGs~~~ 228 (313)
T PF02423_consen 208 VFDAE---WLKPGTHINAIGSYTP 228 (313)
T ss_dssp SB-GG---GS-TT-EEEE-S-SST
T ss_pred cccHH---HcCCCcEEEEecCCCC
Confidence 66554 4789999999987544
No 225
>PRK08291 ectoine utilization protein EutC; Validated
Probab=97.22 E-value=0.0015 Score=63.43 Aligned_cols=86 Identities=23% Similarity=0.206 Sum_probs=61.0
Q ss_pred CCCEEEEEecChHHHHHHHHHhh-CC-CEEEEEcCCCCH-H-HHH----hcCccc---cChhhhccCCCEEEEecCCchh
Q psy6348 97 YGKTLAVLGLGRIGREVALRMQA-FG-MKVIGFDPMVSV-E-DAA----KLNIAS---LGLEDIWPLADYITVHTPLIPQ 165 (333)
Q Consensus 97 ~gktvGIIGlG~IG~~vA~~l~~-~G-~~V~~~d~~~~~-~-~a~----~~gv~~---~~l~ell~~aDvV~l~~P~t~~ 165 (333)
..++++|||.|.+|+..+..+.. .+ -+|.+|+|+... + .++ ..|+.. .++++++.+||+|+.++|..
T Consensus 131 ~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~aT~s~-- 208 (330)
T PRK08291 131 DASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAGADIIVTTTPSE-- 208 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEEEeeCCC--
Confidence 35799999999999998887774 55 479999997632 1 222 124442 36889999999999998853
Q ss_pred hHhhccHHHHhccCCCcEEEEcc
Q psy6348 166 TKNLINAEVLKKCKKGVRVVNVA 188 (333)
Q Consensus 166 t~~li~~~~~~~mk~gailIN~a 188 (333)
.-++..+. +++|+.+..++
T Consensus 209 -~p~i~~~~---l~~g~~v~~vg 227 (330)
T PRK08291 209 -EPILKAEW---LHPGLHVTAMG 227 (330)
T ss_pred -CcEecHHH---cCCCceEEeeC
Confidence 35565543 57887766654
No 226
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=97.22 E-value=0.002 Score=60.63 Aligned_cols=104 Identities=19% Similarity=0.275 Sum_probs=62.3
Q ss_pred CEEEEEecChHHHHHHHHHhhC-CCEEEE-EcCCCCHHH-HHhc--Cccc-cChhhhccCCCEEEEecCCchhhHhhccH
Q psy6348 99 KTLAVLGLGRIGREVALRMQAF-GMKVIG-FDPMVSVED-AAKL--NIAS-LGLEDIWPLADYITVHTPLIPQTKNLINA 172 (333)
Q Consensus 99 ktvGIIGlG~IG~~vA~~l~~~-G~~V~~-~d~~~~~~~-a~~~--gv~~-~~l~ell~~aDvV~l~~P~t~~t~~li~~ 172 (333)
.+|||||+|+||+.+++.+... ++++.+ +++....+. .... ++.. .+++++-.+.|+|+.|.|.... . +
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~DvVve~t~~~~~-~----e 76 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVRVVSSVDALPQRPDLVVECAGHAAL-K----E 76 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCeeeCCHHHhccCCCEEEECCCHHHH-H----H
Confidence 4899999999999999988765 566544 344333222 1222 3333 3688775569999999984322 1 2
Q ss_pred HHHhccCCCcEEEEccCCcccch---HhHHhhhhcCCc
Q psy6348 173 EVLKKCKKGVRVVNVARGGIVDE---NALLDSLKCGHC 207 (333)
Q Consensus 173 ~~~~~mk~gailIN~aRg~~vd~---~aL~~aL~~g~i 207 (333)
-....++.|.-++-.+-|...|. +.|.++.+++..
T Consensus 77 ~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~ 114 (265)
T PRK13303 77 HVVPILKAGIDCAVISVGALADEALRERLEQAAEAGGA 114 (265)
T ss_pred HHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCC
Confidence 22333455655665555544443 446666655544
No 227
>PRK06046 alanine dehydrogenase; Validated
Probab=97.21 E-value=0.0012 Score=64.07 Aligned_cols=87 Identities=22% Similarity=0.357 Sum_probs=62.3
Q ss_pred CCEEEEEecChHHHHHHHHHhh-CCC-EEEEEcCCCCH-H-HHHh----cCc--cc-cChhhhccCCCEEEEecCCchhh
Q psy6348 98 GKTLAVLGLGRIGREVALRMQA-FGM-KVIGFDPMVSV-E-DAAK----LNI--AS-LGLEDIWPLADYITVHTPLIPQT 166 (333)
Q Consensus 98 gktvGIIGlG~IG~~vA~~l~~-~G~-~V~~~d~~~~~-~-~a~~----~gv--~~-~~l~ell~~aDvV~l~~P~t~~t 166 (333)
-+++||||.|.+|+..++.+.. .+. +|.+||++... + .+++ .++ .. .+++++++ +|+|++++|.+
T Consensus 129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~aTps~--- 204 (326)
T PRK06046 129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-CDILVTTTPSR--- 204 (326)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEEEEecCCC---
Confidence 4699999999999999987764 454 67789997632 2 2222 243 22 37888887 99999999853
Q ss_pred HhhccHHHHhccCCCcEEEEccCCc
Q psy6348 167 KNLINAEVLKKCKKGVRVVNVARGG 191 (333)
Q Consensus 167 ~~li~~~~~~~mk~gailIN~aRg~ 191 (333)
.-++..+. +|+|+.+..++.-.
T Consensus 205 ~P~~~~~~---l~~g~hV~~iGs~~ 226 (326)
T PRK06046 205 KPVVKAEW---IKEGTHINAIGADA 226 (326)
T ss_pred CcEecHHH---cCCCCEEEecCCCC
Confidence 46666654 58999988887543
No 228
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.21 E-value=0.00086 Score=67.76 Aligned_cols=109 Identities=20% Similarity=0.199 Sum_probs=71.3
Q ss_pred ccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH------HHHHhcCcccc---ChhhhccCCCEEEEecCCchh
Q psy6348 95 ELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV------EDAAKLNIASL---GLEDIWPLADYITVHTPLIPQ 165 (333)
Q Consensus 95 ~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~------~~a~~~gv~~~---~l~ell~~aDvV~l~~P~t~~ 165 (333)
-+.+++++|+|+|..|.++|+.|+..|++|.++|..... +..++.|+... ...+.+.++|+|+.. |.-+.
T Consensus 11 ~~~~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~dlVV~S-pgi~~ 89 (458)
T PRK01710 11 FIKNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENYLDKLDGFDVIFKT-PSMRI 89 (458)
T ss_pred hhcCCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCChHHhccCCEEEEC-CCCCC
Confidence 366899999999999999999999999999999976421 23445576553 234556889999887 53332
Q ss_pred hHhh-----------ccHH-HH-hccCCCcEEEEccCCcccchHhHHhhhhc
Q psy6348 166 TKNL-----------INAE-VL-KKCKKGVRVVNVARGGIVDENALLDSLKC 204 (333)
Q Consensus 166 t~~l-----------i~~~-~~-~~mk~gailIN~aRg~~vd~~aL~~aL~~ 204 (333)
+.-. +++- .+ ...+...+-|--+.|+--...-+...|+.
T Consensus 90 ~~p~~~~a~~~~i~i~s~~e~~~~~~~~~vIaITGTnGKTTT~~ll~~iL~~ 141 (458)
T PRK01710 90 DSPELVKAKEEGAYITSEMEEFIKYCPAKVFGVTGSDGKTTTTTLIYEMLKE 141 (458)
T ss_pred CchHHHHHHHcCCcEEechHHhhhhcCCCEEEEECCCCHHHHHHHHHHHHHh
Confidence 2221 1211 22 22232345555566777777777777764
No 229
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.20 E-value=0.0013 Score=63.01 Aligned_cols=80 Identities=19% Similarity=0.236 Sum_probs=64.7
Q ss_pred ccccCCCEEEEEecC-hHHHHHHHHHhhC----CCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhH
Q psy6348 93 GTELYGKTLAVLGLG-RIGREVALRMQAF----GMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTK 167 (333)
Q Consensus 93 g~~l~gktvGIIGlG-~IG~~vA~~l~~~----G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~ 167 (333)
+.++.||++.|||-+ .+|+.+|..|... +..|..+.... .++.+..++||+|+.++.. .
T Consensus 152 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T------------~~l~~~~~~ADIvIsAvGk----p 215 (297)
T PRK14167 152 GVDTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSRT------------DDLAAKTRRADIVVAAAGV----P 215 (297)
T ss_pred CCCCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCCC------------CCHHHHHhhCCEEEEccCC----c
Confidence 567999999999995 5899999999865 88999886532 2578889999999999853 4
Q ss_pred hhccHHHHhccCCCcEEEEccCCc
Q psy6348 168 NLINAEVLKKCKKGVRVVNVARGG 191 (333)
Q Consensus 168 ~li~~~~~~~mk~gailIN~aRg~ 191 (333)
+++..+. +|+|+++||++-..
T Consensus 216 ~~i~~~~---ik~gaiVIDvGin~ 236 (297)
T PRK14167 216 ELIDGSM---LSEGATVIDVGINR 236 (297)
T ss_pred CccCHHH---cCCCCEEEEccccc
Confidence 5777655 58999999998554
No 230
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=97.20 E-value=0.0015 Score=59.82 Aligned_cols=93 Identities=18% Similarity=0.274 Sum_probs=61.1
Q ss_pred CEEEEEecChHHHHHHHHHhhC--CC-EEEEEcCCCCHHHH--HhcCccc-cChhhhccCCCEEEEecCCchhhHhhccH
Q psy6348 99 KTLAVLGLGRIGREVALRMQAF--GM-KVIGFDPMVSVEDA--AKLNIAS-LGLEDIWPLADYITVHTPLIPQTKNLINA 172 (333)
Q Consensus 99 ktvGIIGlG~IG~~vA~~l~~~--G~-~V~~~d~~~~~~~a--~~~gv~~-~~l~ell~~aDvV~l~~P~t~~t~~li~~ 172 (333)
.+|||||+|.||+.+.+.++.- .. .+.+||+....... +..+-.. .+++|++++.|+++=|.. ++.-. +
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEaAS--~~Av~---e 75 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIAEVDLVVEAAS--PEAVR---E 75 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHhhccceeeeeCC--HHHHH---H
Confidence 3799999999999999988742 34 47789997644322 2333322 379999999999998864 22222 2
Q ss_pred HHHhccCCCcEEEEccCCcccchH
Q psy6348 173 EVLKKCKKGVRVVNVARGGIVDEN 196 (333)
Q Consensus 173 ~~~~~mk~gailIN~aRg~~vd~~ 196 (333)
-..+.+|.|.-+|-+|-|.+.|+.
T Consensus 76 ~~~~~L~~g~d~iV~SVGALad~~ 99 (255)
T COG1712 76 YVPKILKAGIDVIVMSVGALADEG 99 (255)
T ss_pred HhHHHHhcCCCEEEEechhccChH
Confidence 223345666666667777777544
No 231
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=97.15 E-value=0.0018 Score=64.06 Aligned_cols=108 Identities=23% Similarity=0.258 Sum_probs=75.7
Q ss_pred ccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCC------------------H--HHHHhcCccccChhhhcc-
Q psy6348 93 GTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVS------------------V--EDAAKLNIASLGLEDIWP- 151 (333)
Q Consensus 93 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~------------------~--~~a~~~gv~~~~l~ell~- 151 (333)
+.+|.|+||.|=|+|++|+-.|+.|...|.+|+++|.+.. . ......|.+.++-++++.
T Consensus 202 g~~l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~i~~~e~~~~ 281 (411)
T COG0334 202 GDDLEGARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAGAEYITNEELLEV 281 (411)
T ss_pred CCCcCCCEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcCceEccccccccc
Confidence 4458999999999999999999999999999999865433 0 111222445555577665
Q ss_pred CCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCc
Q psy6348 152 LADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHC 207 (333)
Q Consensus 152 ~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i 207 (333)
.||+.+-| .+.+.|+.+...++|-. +++-.+-|..- .++--.-++.|-+
T Consensus 282 ~cDIl~Pc-----A~~n~I~~~na~~l~ak-~V~EgAN~P~t-~eA~~i~~erGIl 330 (411)
T COG0334 282 DCDILIPC-----ALENVITEDNADQLKAK-IVVEGANGPTT-PEADEILLERGIL 330 (411)
T ss_pred cCcEEccc-----ccccccchhhHHHhhhc-EEEeccCCCCC-HHHHHHHHHCCCE
Confidence 69988866 56888999988888876 66666666654 3333333344433
No 232
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=97.14 E-value=0.0016 Score=60.92 Aligned_cols=115 Identities=16% Similarity=0.228 Sum_probs=71.7
Q ss_pred EEEEec-ChHHHHHHHHHhhCC----CEEEEEcCCCCHHH--HH---h----c-C--cccc-ChhhhccCCCEEEEecCC
Q psy6348 101 LAVLGL-GRIGREVALRMQAFG----MKVIGFDPMVSVED--AA---K----L-N--IASL-GLEDIWPLADYITVHTPL 162 (333)
Q Consensus 101 vGIIGl-G~IG~~vA~~l~~~G----~~V~~~d~~~~~~~--a~---~----~-g--v~~~-~l~ell~~aDvV~l~~P~ 162 (333)
|+|||. |.+|..+|..+...| .+|..||....... .. + . . +... ++.+.+++||+|+++.-.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~~ 80 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGV 80 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCCC
Confidence 589999 999999999988777 79999997652211 11 1 1 1 1111 457889999999995421
Q ss_pred --ch---------hhHhhcc--HHHHhccCCCcEEEEccCCcccchHhHHhh--hhcCCceEEE-eccC
Q psy6348 163 --IP---------QTKNLIN--AEVLKKCKKGVRVVNVARGGIVDENALLDS--LKCGHCGGAA-LDVF 215 (333)
Q Consensus 163 --t~---------~t~~li~--~~~~~~mk~gailIN~aRg~~vd~~aL~~a--L~~g~i~gaa-lDV~ 215 (333)
.+ .+..++. .+.+....|++++||.+-.-=+-...+.+. +...++.|.+ +|..
T Consensus 81 ~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tNP~d~~t~~~~~~sg~~~~kviG~~~ld~~ 149 (263)
T cd00650 81 GRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNPVDIITYLVWRYSGLPKEKVIGLGTLDPI 149 (263)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCchhEEEeecchHH
Confidence 10 1111121 123344458899999964333334445555 5667888888 7753
No 233
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=97.13 E-value=0.0028 Score=63.22 Aligned_cols=90 Identities=29% Similarity=0.352 Sum_probs=63.8
Q ss_pred ccCCCEEEEEec----------ChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCch
Q psy6348 95 ELYGKTLAVLGL----------GRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIP 164 (333)
Q Consensus 95 ~l~gktvGIIGl----------G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~ 164 (333)
.+.|++|+|+|+ ..-...+++.|...|.+|.+|||....+..+..+. ..++++.+++||+|+++++- +
T Consensus 310 ~~~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~g~~v~~~DP~~~~~~~~~~~~-~~~~~~~~~~ad~~v~~t~~-~ 387 (411)
T TIGR03026 310 PLKGKTVLILGLAFKPNTDDVRESPALDIIELLKEKGAKVKAYDPLVPEEEVKGLPL-IDDLEEALKGADALVILTDH-D 387 (411)
T ss_pred cccCCEEEEEeeEecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChhhhhhccc-CCCHHHHHhCCCEEEEecCC-H
Confidence 368999999998 34677899999999999999999875543332221 24788999999999999873 4
Q ss_pred hhHhhccHHHHhccCCCcEEEEc
Q psy6348 165 QTKNLINAEVLKKCKKGVRVVNV 187 (333)
Q Consensus 165 ~t~~li~~~~~~~mk~gailIN~ 187 (333)
+-+.+-.+.....|+ ..+++++
T Consensus 388 ~~~~~~~~~~~~~~~-~~~v~D~ 409 (411)
T TIGR03026 388 EFKDLDLEKIKDLMK-GKVVVDT 409 (411)
T ss_pred HHhccCHHHHHHhcC-CCEEEeC
Confidence 444332233334455 4577774
No 234
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.12 E-value=0.002 Score=63.74 Aligned_cols=101 Identities=21% Similarity=0.161 Sum_probs=68.5
Q ss_pred CEEEEEecChHHHHHHHHHhhCC-CEEEEEcCCC-CHHHHHhcC---ccc--------cChhhhccCCCEEEEecCCchh
Q psy6348 99 KTLAVLGLGRIGREVALRMQAFG-MKVIGFDPMV-SVEDAAKLN---IAS--------LGLEDIWPLADYITVHTPLIPQ 165 (333)
Q Consensus 99 ktvGIIGlG~IG~~vA~~l~~~G-~~V~~~d~~~-~~~~a~~~g---v~~--------~~l~ell~~aDvV~l~~P~t~~ 165 (333)
+++.|||+|.||+.+|..|.+.| .+|++-||+. +..++.... ++. -.+.+++++.|+|+.++|..-.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~~~ 81 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPPFVD 81 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCchhh
Confidence 68999999999999999999988 8999999976 333333332 221 1467889999999999984322
Q ss_pred hHhhccHHHH-hccCCCcEEEEccCCcccchHhHHhhhhcCC
Q psy6348 166 TKNLINAEVL-KKCKKGVRVVNVARGGIVDENALLDSLKCGH 206 (333)
Q Consensus 166 t~~li~~~~~-~~mk~gailIN~aRg~~vd~~aL~~aL~~g~ 206 (333)
...+ +.++.|.-.++++-....- -++.+..++..
T Consensus 82 ------~~i~ka~i~~gv~yvDts~~~~~~-~~~~~~a~~Ag 116 (389)
T COG1748 82 ------LTILKACIKTGVDYVDTSYYEEPP-WKLDEEAKKAG 116 (389)
T ss_pred ------HHHHHHHHHhCCCEEEcccCCchh-hhhhHHHHHcC
Confidence 1222 4467778888887655442 33433333333
No 235
>KOG2304|consensus
Probab=97.11 E-value=0.0004 Score=63.60 Aligned_cols=143 Identities=20% Similarity=0.137 Sum_probs=87.0
Q ss_pred ccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHHh-----------cCc------------------c-c
Q psy6348 95 ELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAAK-----------LNI------------------A-S 143 (333)
Q Consensus 95 ~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~-----------~gv------------------~-~ 143 (333)
...-+.|+|||.|.||+.+|+.+...|++|+.+|...+. .++.+ .+. + .
T Consensus 8 ~~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~ 87 (298)
T KOG2304|consen 8 MAEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTS 87 (298)
T ss_pred cccccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHc
Confidence 344578999999999999999999999999999986522 11110 000 0 0
Q ss_pred cChhhhccCCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCc
Q psy6348 144 LGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSE 223 (333)
Q Consensus 144 ~~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~ 223 (333)
.++.++++.+|+|+=++-.+.+.+.-+-++.-...|+.++|..- -+-+...+++.+++.... .++|..|.+-|.-
T Consensus 88 tnv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tN--TSSl~lt~ia~~~~~~sr-f~GlHFfNPvPvM-- 162 (298)
T KOG2304|consen 88 TNVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATN--TSSLSLTDIASATQRPSR-FAGLHFFNPVPVM-- 162 (298)
T ss_pred CCHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeec--ccceeHHHHHhhccChhh-hceeeccCCchhH--
Confidence 14556677788777555433333333333333446777776533 223556677778775544 5899998876532
Q ss_pred cchhhcCCCcEEEccCCCCCcHHHH
Q psy6348 224 QTFELIKHPKVIVTPHLGASTKEAQ 248 (333)
Q Consensus 224 ~~~~L~~~pnvi~TPHi~~~t~ea~ 248 (333)
.|. .||=|+..+--|.++.
T Consensus 163 ---KLv---EVir~~~TS~eTf~~l 181 (298)
T KOG2304|consen 163 ---KLV---EVIRTDDTSDETFNAL 181 (298)
T ss_pred ---HHh---hhhcCCCCCHHHHHHH
Confidence 233 3666666444343333
No 236
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=97.09 E-value=0.0045 Score=62.36 Aligned_cols=118 Identities=20% Similarity=0.149 Sum_probs=78.5
Q ss_pred ccccCCCEEEEEecChHHHHHHHHHhhCCCEEEE-EcCC-------C-CHHHH------H--------h-----cCcccc
Q psy6348 93 GTELYGKTLAVLGLGRIGREVALRMQAFGMKVIG-FDPM-------V-SVEDA------A--------K-----LNIASL 144 (333)
Q Consensus 93 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~-~d~~-------~-~~~~a------~--------~-----~gv~~~ 144 (333)
+.++.|||+.|=|+|++|+..|+.|..+|.+|++ .|.. - +.+.. + . .+.+++
T Consensus 232 ~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~~ 311 (454)
T PTZ00079 232 NDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKYV 311 (454)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEEe
Confidence 4578999999999999999999999999999994 3433 1 12111 0 0 023334
Q ss_pred Chhhhc-cCCCEEEEecCCchhhHhhccHHHHhcc-CCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCC
Q psy6348 145 GLEDIW-PLADYITVHTPLIPQTKNLINAEVLKKC-KKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCE 217 (333)
Q Consensus 145 ~l~ell-~~aDvV~l~~P~t~~t~~li~~~~~~~m-k~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~ 217 (333)
+-++++ -.||+.+-| .+.+.|+.+..+.+ +.++.+|--+-......+ -.+.|++..|. ++=|...+
T Consensus 312 ~~~~~~~~~cDI~iPc-----A~~n~I~~~~a~~l~~~~ak~V~EgAN~p~t~e-A~~~L~~~GI~-~~PD~~aN 379 (454)
T PTZ00079 312 PGKKPWEVPCDIAFPC-----ATQNEINLEDAKLLIKNGCKLVAEGANMPTTIE-ATHLFKKNGVI-FCPGKAAN 379 (454)
T ss_pred CCcCcccCCccEEEec-----cccccCCHHHHHHHHHcCCeEEEecCCCCCCHH-HHHHHHHCCcE-EEChhhhc
Confidence 444444 469988877 46788888877766 666777766665555554 44666666664 45555433
No 237
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.07 E-value=0.0053 Score=59.22 Aligned_cols=106 Identities=15% Similarity=0.052 Sum_probs=75.8
Q ss_pred HHHHHHHHHhhCCCEEEEEcCCCCH--------HHH-----------HhcC-------------cccc-C--hhhhccCC
Q psy6348 109 IGREVALRMQAFGMKVIGFDPMVSV--------EDA-----------AKLN-------------IASL-G--LEDIWPLA 153 (333)
Q Consensus 109 IG~~vA~~l~~~G~~V~~~d~~~~~--------~~a-----------~~~g-------------v~~~-~--l~ell~~a 153 (333)
||..+|..+...|++|..||+.... +.+ .+.| ++.. + +.+.+++|
T Consensus 1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a 80 (314)
T PRK08269 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA 80 (314)
T ss_pred CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence 6899999999999999999997731 111 1111 1122 2 44788999
Q ss_pred CEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCC
Q psy6348 154 DYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCE 217 (333)
Q Consensus 154 DvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~ 217 (333)
|+|+-++|...+.+..+-.+..+.++++++| ++.-+.+....|.+.++. +=+..++..|.+
T Consensus 81 D~ViEav~E~~~~K~~~f~~l~~~~~~~~il--aSntS~~~~~~la~~~~~-p~r~~g~Hf~~P 141 (314)
T PRK08269 81 DLVFEAVPEVLDAKREALRWLGRHVDADAII--ASTTSTFLVTDLQRHVAH-PERFLNAHWLNP 141 (314)
T ss_pred CEEEECCcCCHHHHHHHHHHHHhhCCCCcEE--EEccccCCHHHHHhhcCC-cccEEEEecCCc
Confidence 9999999999999998888888889999999 445555677778877742 222355655543
No 238
>KOG0023|consensus
Probab=97.07 E-value=0.0013 Score=63.19 Aligned_cols=88 Identities=20% Similarity=0.233 Sum_probs=57.3
Q ss_pred CCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC-CH-HHHHhcCcccc--C------hhhhccCCCEEEEecCCchhh
Q psy6348 97 YGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV-SV-EDAAKLNIASL--G------LEDIWPLADYITVHTPLIPQT 166 (333)
Q Consensus 97 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~-~~a~~~gv~~~--~------l~ell~~aDvV~l~~P~t~~t 166 (333)
.|+.+||+|+|-+|+.-.+.++++||+|++.|+.. +. +..+.+|.+.. + .+++...-|.++-+++.- .
T Consensus 181 pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGAd~fv~~~~d~d~~~~~~~~~dg~~~~v~~~--a 258 (360)
T KOG0023|consen 181 PGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGADVFVDSTEDPDIMKAIMKTTDGGIDTVSNL--A 258 (360)
T ss_pred CCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCcceeEEecCCHHHHHHHHHhhcCcceeeeec--c
Confidence 79999999999999999999999999999999875 33 44455776431 1 233444455555554421 1
Q ss_pred HhhccHHHHhccCCCcEEEEc
Q psy6348 167 KNLINAEVLKKCKKGVRVVNV 187 (333)
Q Consensus 167 ~~li~~~~~~~mk~gailIN~ 187 (333)
.+-+ +..++.||++..+|-+
T Consensus 259 ~~~~-~~~~~~lk~~Gt~V~v 278 (360)
T KOG0023|consen 259 EHAL-EPLLGLLKVNGTLVLV 278 (360)
T ss_pred ccch-HHHHHHhhcCCEEEEE
Confidence 1111 3455566666555544
No 239
>PRK06223 malate dehydrogenase; Reviewed
Probab=97.07 E-value=0.0029 Score=60.48 Aligned_cols=111 Identities=18% Similarity=0.226 Sum_probs=65.8
Q ss_pred CEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCCCHHHHHhc---------C--cc--c-cChhhhccCCCEEEEecC--
Q psy6348 99 KTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMVSVEDAAKL---------N--IA--S-LGLEDIWPLADYITVHTP-- 161 (333)
Q Consensus 99 ktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~~~a~~~---------g--v~--~-~~l~ell~~aDvV~l~~P-- 161 (333)
+||+|||.|.||..+|..+...|. +|+.||........... + .. . .+. +.+++||+|++++.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiVii~~~~p 81 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVVVITAGVP 81 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEEEECCCCC
Confidence 689999999999999999987665 99999986533222111 1 11 1 134 45799999999863
Q ss_pred Cch---------hhHhhccHHH---HhccCCCcEEEEccCCcccchHhHHhh--hhcCCceEEE
Q psy6348 162 LIP---------QTKNLINAEV---LKKCKKGVRVVNVARGGIVDENALLDS--LKCGHCGGAA 211 (333)
Q Consensus 162 ~t~---------~t~~li~~~~---~~~mk~gailIN~aRg~~vd~~aL~~a--L~~g~i~gaa 211 (333)
..+ .+..++ .+. +....+++++|+.+-..-+....+.+. +...++.|.+
T Consensus 82 ~~~~~~r~~~~~~n~~i~-~~i~~~i~~~~~~~~viv~tNP~d~~~~~~~~~s~~~~~~viG~g 144 (307)
T PRK06223 82 RKPGMSRDDLLGINAKIM-KDVAEGIKKYAPDAIVIVVTNPVDAMTYVALKESGFPKNRVIGMA 144 (307)
T ss_pred CCcCCCHHHHHHHHHHHH-HHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCcccEEEeC
Confidence 211 111122 122 222336678888865444444444442 2234677764
No 240
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=97.06 E-value=0.011 Score=57.52 Aligned_cols=130 Identities=15% Similarity=0.154 Sum_probs=84.4
Q ss_pred hhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCCCEEEEEecC--hHHHHHHHH
Q psy6348 39 TAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLG--RIGREVALR 116 (333)
Q Consensus 39 ~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIGlG--~IG~~vA~~ 116 (333)
+.+...+|+|+|.-+....++- +++=++.+.++ .|..+.|+||++||=+ ++..+++..
T Consensus 117 ~~a~~~~vPVINa~~~~~HPtQ--aL~Dl~Ti~e~------------------~g~~l~gl~ia~vGD~~~~v~~Sl~~~ 176 (334)
T PRK01713 117 ELAEYAGVPVFNGLTDEFHPTQ--MLADVLTMIEN------------------CDKPLSEISYVYIGDARNNMGNSLLLI 176 (334)
T ss_pred HHHHhCCCCEEECCCCCCChHH--HHHHHHHHHHH------------------cCCCcCCcEEEEECCCccCHHHHHHHH
Confidence 4456678999999665555543 23223333221 1224789999999986 678888889
Q ss_pred HhhCCCEEEEEcCCC---CHH-------HHHhcCcc--c-cChhhhccCCCEEEEec----CCch---hh------Hhhc
Q psy6348 117 MQAFGMKVIGFDPMV---SVE-------DAAKLNIA--S-LGLEDIWPLADYITVHT----PLIP---QT------KNLI 170 (333)
Q Consensus 117 l~~~G~~V~~~d~~~---~~~-------~a~~~gv~--~-~~l~ell~~aDvV~l~~----P~t~---~t------~~li 170 (333)
+..+|++|..+.|.. ..+ .+++.|.. . .++++.+++||+|..-+ .... .. .-.+
T Consensus 177 ~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvVyt~~w~sm~~~~~~~~~~~~~~~~y~v 256 (334)
T PRK01713 177 GAKLGMDVRICAPKALLPEASLVEMCEKFAKESGARITVTDDIDKAVKGVDFVHTDVWVSMGEPLETWGERIKLLMPYQV 256 (334)
T ss_pred HHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcceeecccchhhHHHHHHhccCCcC
Confidence 999999999988753 111 12334533 2 37999999999998732 1100 11 1125
Q ss_pred cHHHHhcc-CCCcEEEEcc
Q psy6348 171 NAEVLKKC-KKGVRVVNVA 188 (333)
Q Consensus 171 ~~~~~~~m-k~gailIN~a 188 (333)
+++.++.. |+++++..|.
T Consensus 257 ~~ell~~a~k~~aivmH~l 275 (334)
T PRK01713 257 TPELMKRTGNPKVKFMHCL 275 (334)
T ss_pred CHHHHhccCCCCCEEECCC
Confidence 67778875 7889998884
No 241
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=97.04 E-value=0.0029 Score=61.26 Aligned_cols=115 Identities=19% Similarity=0.228 Sum_probs=70.2
Q ss_pred cCCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCCCHHHHHhc---------C----ccc-cChhhhccCCCEEEEec
Q psy6348 96 LYGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMVSVEDAAKL---------N----IAS-LGLEDIWPLADYITVHT 160 (333)
Q Consensus 96 l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~~~a~~~---------g----v~~-~~l~ell~~aDvV~l~~ 160 (333)
+..+||+|||.|.||..+|..+...|. +|+.+|.......++.+ + +.. .+. +.+++||+|+++.
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiVI~ta 82 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVVIVTA 82 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEEEECC
Confidence 455799999999999999999888785 89999987643221111 1 111 144 5679999999976
Q ss_pred CC--c--------------hhhHhhcc--HHHHhccCCCcEEEEccCCcccchHhHHhhhh--cCCceEEE
Q psy6348 161 PL--I--------------PQTKNLIN--AEVLKKCKKGVRVVNVARGGIVDENALLDSLK--CGHCGGAA 211 (333)
Q Consensus 161 P~--t--------------~~t~~li~--~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~--~g~i~gaa 211 (333)
-. . ..+..++. -+.+....|.+++|+.+-..=+-...+.+... ..++.|.+
T Consensus 83 g~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t~~~~~~sg~p~~rviGlg 153 (321)
T PTZ00082 83 GLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMVKLLQEHSGLPKNKVCGMA 153 (321)
T ss_pred CCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHhcCCChhhEEEec
Confidence 21 1 11122221 11233345777999998544344445544432 34666666
No 242
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=97.03 E-value=0.015 Score=57.22 Aligned_cols=98 Identities=19% Similarity=0.128 Sum_probs=64.4
Q ss_pred CCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCcc-ccCCCEEEEEecC--------hHHHHHH
Q psy6348 44 KGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGT-ELYGKTLAVLGLG--------RIGREVA 114 (333)
Q Consensus 44 ~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~-~l~gktvGIIGlG--------~IG~~vA 114 (333)
-.|+|+|.-+....++- +++=++.+.++ +.+. .+.|+||+|+|.| ++.++++
T Consensus 134 s~vPVINa~~~~~HPtQ--aLaDl~Ti~e~-----------------~G~~~~l~g~kvai~~~~d~~~gr~~~v~~Sl~ 194 (357)
T TIGR03316 134 QRPPLVNLQCDIDHPTQ--AMADIMTLQEK-----------------FGGIENLKGKKFAMTWAYSPSYGKPLSVPQGII 194 (357)
T ss_pred CCCCEEECCCCCCCchH--HHHHHHHHHHH-----------------hCCccccCCCEEEEEeccccccCccchHHHHHH
Confidence 36999999765555543 33333333221 1112 3789999999853 4557888
Q ss_pred HHHhhCCCEEEEEcCCC---CHHH-------HHhcCcc--c-cChhhhccCCCEEEEec
Q psy6348 115 LRMQAFGMKVIGFDPMV---SVED-------AAKLNIA--S-LGLEDIWPLADYITVHT 160 (333)
Q Consensus 115 ~~l~~~G~~V~~~d~~~---~~~~-------a~~~gv~--~-~~l~ell~~aDvV~l~~ 160 (333)
..+..+|++|....|.. .++. +++.|.. . .++++.++++|+|..-.
T Consensus 195 ~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~~ 253 (357)
T TIGR03316 195 GLMTRFGMDVTLAHPEGYHLLPEVIEVAKKNAAENGGKFNIVNSMDEAFKDADIVYPKS 253 (357)
T ss_pred HHHHHcCCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEECC
Confidence 88999999999998763 2221 2344543 2 37999999999998863
No 243
>PRK06199 ornithine cyclodeaminase; Validated
Probab=97.03 E-value=0.0021 Score=63.71 Aligned_cols=90 Identities=17% Similarity=0.137 Sum_probs=64.5
Q ss_pred CCEEEEEecChHHHHHHHHHhh-CC--CEEEEEcCCCCH--HHHH----hc-C---cccc-ChhhhccCCCEEEEecCCc
Q psy6348 98 GKTLAVLGLGRIGREVALRMQA-FG--MKVIGFDPMVSV--EDAA----KL-N---IASL-GLEDIWPLADYITVHTPLI 163 (333)
Q Consensus 98 gktvGIIGlG~IG~~vA~~l~~-~G--~~V~~~d~~~~~--~~a~----~~-g---v~~~-~l~ell~~aDvV~l~~P~t 163 (333)
-++++|||.|..++..++.+.. +. -+|.+|+|+... +.++ .. + +..+ +.++++++||+|+.+++.+
T Consensus 155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT~s~ 234 (379)
T PRK06199 155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCNSGE 234 (379)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEccCCC
Confidence 4799999999999999988766 42 389999998733 1111 11 2 3333 7999999999999999754
Q ss_pred h---hhHhhccHHHHhccCCCcEEEEccCC
Q psy6348 164 P---QTKNLINAEVLKKCKKGVRVVNVARG 190 (333)
Q Consensus 164 ~---~t~~li~~~~~~~mk~gailIN~aRg 190 (333)
. .+.-++..+. +|+|+.++.++.-
T Consensus 235 ~~~~s~~Pv~~~~~---lkpG~hv~~ig~~ 261 (379)
T PRK06199 235 TGDPSTYPYVKREW---VKPGAFLLMPAAC 261 (379)
T ss_pred CCCCCcCcEecHHH---cCCCcEEecCCcc
Confidence 3 3446676554 6899988877653
No 244
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=97.01 E-value=0.0043 Score=63.16 Aligned_cols=101 Identities=23% Similarity=0.260 Sum_probs=70.6
Q ss_pred ccCCCEEEEEec----------ChHHHHHHHHHhhCCCEEEEEcCCCCHHHHH-hc----------------------Cc
Q psy6348 95 ELYGKTLAVLGL----------GRIGREVALRMQAFGMKVIGFDPMVSVEDAA-KL----------------------NI 141 (333)
Q Consensus 95 ~l~gktvGIIGl----------G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~-~~----------------------gv 141 (333)
.+.|++|+|+|+ ..-...+++.|...|.+|.+|||....+... .. ++
T Consensus 321 ~~~~~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (473)
T PLN02353 321 TVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTAVKQV 400 (473)
T ss_pred ccCCCEEEEEeeeecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChHHHHHHhhcccccccccccccccccccccce
Confidence 588999999998 4467889999999999999999987543321 12 12
Q ss_pred ccc-ChhhhccCCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhH
Q psy6348 142 ASL-GLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENAL 198 (333)
Q Consensus 142 ~~~-~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL 198 (333)
+++ ++++.+++||+|+++++- ++.+.+--......|++..+++|. |+ +++.+.+
T Consensus 401 ~~~~~~~~a~~~aD~vvi~t~~-~ef~~l~~~~~~~~m~~~~~viD~-rn-~l~~~~~ 455 (473)
T PLN02353 401 SVVWDAYEATKGAHGICILTEW-DEFKTLDYQKIYDNMQKPAFVFDG-RN-VLDHEKL 455 (473)
T ss_pred eeeCCHHHHhcCCCEEEECCCC-hHhcccCHHHHHHhccCCCEEEEC-CC-CCCHHHH
Confidence 333 557899999999999873 444444333445667766688885 43 4455554
No 245
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=97.01 E-value=0.0022 Score=57.91 Aligned_cols=91 Identities=21% Similarity=0.277 Sum_probs=62.0
Q ss_pred cccCCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC-CH------------------H-----HHHhc--Ccc----
Q psy6348 94 TELYGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV-SV------------------E-----DAAKL--NIA---- 142 (333)
Q Consensus 94 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~------------------~-----~a~~~--gv~---- 142 (333)
..|.+++|.|||+|.+|+.+|+.|...|. ++..+|+.. +. . ..++. .++
T Consensus 17 ~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~ 96 (202)
T TIGR02356 17 QRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTAL 96 (202)
T ss_pred HHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEe
Confidence 46899999999999999999999999998 899998762 10 0 11111 111
Q ss_pred --cc---ChhhhccCCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEcc
Q psy6348 143 --SL---GLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVA 188 (333)
Q Consensus 143 --~~---~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~a 188 (333)
.. +++++++++|+|+.++. +.+++..+++...+.-+ -+|..+
T Consensus 97 ~~~i~~~~~~~~~~~~D~Vi~~~d-~~~~r~~l~~~~~~~~i---p~i~~~ 143 (202)
T TIGR02356 97 KERVTAENLELLINNVDLVLDCTD-NFATRYLINDACVALGT---PLISAA 143 (202)
T ss_pred hhcCCHHHHHHHHhCCCEEEECCC-CHHHHHHHHHHHHHcCC---CEEEEE
Confidence 11 24567889999988874 56777777766554333 355543
No 246
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=96.99 E-value=0.0047 Score=60.94 Aligned_cols=108 Identities=13% Similarity=0.116 Sum_probs=78.2
Q ss_pred CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcC---------------------ccc-cChhhhccCCCEE
Q psy6348 99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLN---------------------IAS-LGLEDIWPLADYI 156 (333)
Q Consensus 99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g---------------------v~~-~~l~ell~~aDvV 156 (333)
++|.|+|.|-+|...+..+..+|++|+++|-..+.-..-..| ... .+.++.++++|++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~adv~ 80 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDADVV 80 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCCEE
Confidence 479999999999999999999999999998644221111111 122 2677889999999
Q ss_pred EEecCCchhhHhhcc--------HHHHhccCCCcEEEEccCCcccchHhHHhhhhcCC
Q psy6348 157 TVHTPLIPQTKNLIN--------AEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGH 206 (333)
Q Consensus 157 ~l~~P~t~~t~~li~--------~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~ 206 (333)
++++|..+.-.|-++ ++..+.++..+++|+-|+-.+=..+.+.+.+.+..
T Consensus 81 fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~ 138 (414)
T COG1004 81 FIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREEN 138 (414)
T ss_pred EEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhc
Confidence 999995443333332 45567787779999999987777777777665554
No 247
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=96.96 E-value=0.009 Score=51.91 Aligned_cols=92 Identities=20% Similarity=0.198 Sum_probs=66.1
Q ss_pred CCCEEEEEe--cChHHHHHHHHHhhCCCEEEEEcCCC---CH--HH-------HHhcCc--cc-cChhhhccCCCEEEEe
Q psy6348 97 YGKTLAVLG--LGRIGREVALRMQAFGMKVIGFDPMV---SV--ED-------AAKLNI--AS-LGLEDIWPLADYITVH 159 (333)
Q Consensus 97 ~gktvGIIG--lG~IG~~vA~~l~~~G~~V~~~d~~~---~~--~~-------a~~~gv--~~-~~l~ell~~aDvV~l~ 159 (333)
.|+||++|| .+++..+++..+..||+++....|.. .. +. +.+.|. .. .++++.++++|+|..-
T Consensus 1 ~gl~i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~e~l~~aDvvy~~ 80 (158)
T PF00185_consen 1 KGLKIAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITDDIEEALKGADVVYTD 80 (158)
T ss_dssp TTEEEEEESSTTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEESSHHHHHTT-SEEEEE
T ss_pred CCCEEEEECCCCChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEeCHHHhcCCCCEEEEc
Confidence 489999999 38999999999999999999998865 12 11 122243 33 3799999999999887
Q ss_pred cCC----chh------hH-hhccHHHHhccCCCcEEEEcc
Q psy6348 160 TPL----IPQ------TK-NLINAEVLKKCKKGVRVVNVA 188 (333)
Q Consensus 160 ~P~----t~~------t~-~li~~~~~~~mk~gailIN~a 188 (333)
.-- .+. .. -.++++.++.+|++++|..+.
T Consensus 81 ~~~s~~~~e~~~~~~~~~~y~v~~~~m~~a~~~~i~mH~L 120 (158)
T PF00185_consen 81 RWQSMGDKERFKRLEKFKPYQVTEELMERAKPDAIFMHPL 120 (158)
T ss_dssp SSSCTTSGGHHHHHHHHGGGSBSHHHHHTSSTT-EEEESS
T ss_pred CcccccchHHHHHHHHhcCCccCHHHHHhcCCCcEEEeCC
Confidence 653 110 11 345788889899999999984
No 248
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=96.96 E-value=0.0048 Score=59.14 Aligned_cols=90 Identities=13% Similarity=0.175 Sum_probs=58.7
Q ss_pred CEEEEEecChHHHHHHHHHhhCC--CEEEEEcCCCCHHHHHhcC---------c--cc-cChhhhccCCCEEEEecCCch
Q psy6348 99 KTLAVLGLGRIGREVALRMQAFG--MKVIGFDPMVSVEDAAKLN---------I--AS-LGLEDIWPLADYITVHTPLIP 164 (333)
Q Consensus 99 ktvGIIGlG~IG~~vA~~l~~~G--~~V~~~d~~~~~~~a~~~g---------v--~~-~~l~ell~~aDvV~l~~P~t~ 164 (333)
++|+|||.|.+|+.+|..|...| .+|..+|+........... . .. ..-.+.+++||+|+++.....
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l~~aDIVIitag~~~ 80 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIVVITAGAPQ 80 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHhCCCCEEEEccCCCC
Confidence 48999999999999999999888 4899999876432222211 1 11 122345789999999987421
Q ss_pred ---hhH--------hhcc--HHHHhccCCCcEEEEcc
Q psy6348 165 ---QTK--------NLIN--AEVLKKCKKGVRVVNVA 188 (333)
Q Consensus 165 ---~t~--------~li~--~~~~~~mk~gailIN~a 188 (333)
.++ .++. .+.+....+.+++|+++
T Consensus 81 ~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvs 117 (306)
T cd05291 81 KPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVAS 117 (306)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 111 1111 12334456788999997
No 249
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=96.95 E-value=0.0089 Score=49.24 Aligned_cols=99 Identities=20% Similarity=0.272 Sum_probs=65.4
Q ss_pred CEEEEEe----cChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccc-cChhhhccCCCEEEEecCCchhhHhhccHH
Q psy6348 99 KTLAVLG----LGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIAS-LGLEDIWPLADYITVHTPLIPQTKNLINAE 173 (333)
Q Consensus 99 ktvGIIG----lG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~-~~l~ell~~aDvV~l~~P~t~~t~~li~~~ 173 (333)
|+++||| -+..|..+.+.|++.|++|+..+|.... -.|... .+++|.-...|++++++|. +.+..++ ++
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~----i~G~~~y~sl~e~p~~iDlavv~~~~-~~~~~~v-~~ 74 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGE----ILGIKCYPSLAEIPEPIDLAVVCVPP-DKVPEIV-DE 74 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSE----ETTEE-BSSGGGCSST-SEEEE-S-H-HHHHHHH-HH
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceE----ECcEEeeccccCCCCCCCEEEEEcCH-HHHHHHH-HH
Confidence 6899999 6899999999999999999999986522 135443 4788855889999999993 3444444 22
Q ss_pred HHhccCCCcEEEEccCCcccchHhHHhhhhcCCce
Q psy6348 174 VLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCG 208 (333)
Q Consensus 174 ~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~ 208 (333)
. ..+..+.+++..+ ..++++.+.+++..+.
T Consensus 75 ~-~~~g~~~v~~~~g----~~~~~~~~~a~~~gi~ 104 (116)
T PF13380_consen 75 A-AALGVKAVWLQPG----AESEELIEAAREAGIR 104 (116)
T ss_dssp H-HHHT-SEEEE-TT----S--HHHHHHHHHTT-E
T ss_pred H-HHcCCCEEEEEcc----hHHHHHHHHHHHcCCE
Confidence 2 3345677888877 6677788888887765
No 250
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=96.94 E-value=0.0073 Score=57.85 Aligned_cols=111 Identities=14% Similarity=0.151 Sum_probs=74.5
Q ss_pred CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHh-cCccc------------cChhhhccCCCEEEEecCCch
Q psy6348 99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV-SVEDAAK-LNIAS------------LGLEDIWPLADYITVHTPLIP 164 (333)
Q Consensus 99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~-~gv~~------------~~l~ell~~aDvV~l~~P~t~ 164 (333)
++|+|+|.|.||+-+|-+|...|.+|..++|.. ..+...+ .|+.. ....+.....|+|++++-..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~vK~~- 81 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLACKAY- 81 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEECCHH-
Confidence 479999999999999999999999999999864 2232222 23321 01122345789999998532
Q ss_pred hhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEe
Q psy6348 165 QTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAAL 212 (333)
Q Consensus 165 ~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaal 212 (333)
++...+ +.....+.+++.+|-+ --++-.++.+.+.+...++.++..
T Consensus 82 ~~~~al-~~l~~~l~~~t~vv~l-QNGv~~~e~l~~~~~~~~v~~g~~ 127 (305)
T PRK05708 82 DAEPAV-ASLAHRLAPGAELLLL-QNGLGSQDAVAARVPHARCIFASS 127 (305)
T ss_pred hHHHHH-HHHHhhCCCCCEEEEE-eCCCCCHHHHHHhCCCCcEEEEEe
Confidence 344433 4455667788877766 455566777888887666665443
No 251
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=96.94 E-value=0.004 Score=60.52 Aligned_cols=86 Identities=21% Similarity=0.230 Sum_probs=64.3
Q ss_pred CCEEEEEecChHHHHHHHHHhh-CCC-EEEEEcCCCCH-H-HH----HhcCc--ccc-ChhhhccCCCEEEEecCCchhh
Q psy6348 98 GKTLAVLGLGRIGREVALRMQA-FGM-KVIGFDPMVSV-E-DA----AKLNI--ASL-GLEDIWPLADYITVHTPLIPQT 166 (333)
Q Consensus 98 gktvGIIGlG~IG~~vA~~l~~-~G~-~V~~~d~~~~~-~-~a----~~~gv--~~~-~l~ell~~aDvV~l~~P~t~~t 166 (333)
-++++|||.|..+..-++.++. ++. +|.+|+|.... + .+ ++.+. ..+ +.+++++.||+|+.++|.++
T Consensus 130 a~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~~-- 207 (330)
T COG2423 130 ASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPSTE-- 207 (330)
T ss_pred CcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCCCC--
Confidence 4589999999999999988875 444 79999997732 2 22 12232 233 78999999999999998554
Q ss_pred HhhccHHHHhccCCCcEEEEccC
Q psy6348 167 KNLINAEVLKKCKKGVRVVNVAR 189 (333)
Q Consensus 167 ~~li~~~~~~~mk~gailIN~aR 189 (333)
-++..+. +|||+.+..++.
T Consensus 208 -Pil~~~~---l~~G~hI~aiGa 226 (330)
T COG2423 208 -PVLKAEW---LKPGTHINAIGA 226 (330)
T ss_pred -CeecHhh---cCCCcEEEecCC
Confidence 6676665 579999999875
No 252
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=96.92 E-value=0.0045 Score=57.98 Aligned_cols=63 Identities=29% Similarity=0.325 Sum_probs=45.9
Q ss_pred CEEEEEec-ChHHHHHHHHHhh-CCCEEEE-EcCCCCHH-HHHhcCccc-cChhhhccCCCEEEEecC
Q psy6348 99 KTLAVLGL-GRIGREVALRMQA-FGMKVIG-FDPMVSVE-DAAKLNIAS-LGLEDIWPLADYITVHTP 161 (333)
Q Consensus 99 ktvGIIGl-G~IG~~vA~~l~~-~G~~V~~-~d~~~~~~-~a~~~gv~~-~~l~ell~~aDvV~l~~P 161 (333)
.+|+|+|+ |+||+.+++.+.. -++++.+ +|+..... .....++.. .+++++++++|+|+.++|
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~~~DvVid~t~ 69 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVLADADVLIDFTT 69 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHhccCCCEEEECCC
Confidence 48999998 9999999998875 4788766 67654221 112334433 478898989999998876
No 253
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=96.91 E-value=0.015 Score=55.93 Aligned_cols=128 Identities=15% Similarity=0.100 Sum_probs=84.0
Q ss_pred hhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCCCEEEEEec-ChHHHHHHHHH
Q psy6348 39 TAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGL-GRIGREVALRM 117 (333)
Q Consensus 39 ~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIGl-G~IG~~vA~~l 117 (333)
+.+..-+++|+|+-+....++- +++=++.+.++ .| .+.|++|++||= +++.++++..+
T Consensus 114 ~~a~~~~vPVINag~~~~HPtQ--aL~Dl~Ti~e~------------------~g-~l~gl~i~~vGd~~~v~~Sl~~~l 172 (304)
T PRK00779 114 ELAEYSTVPVINGLTDLSHPCQ--ILADLLTIYEH------------------RG-SLKGLKVAWVGDGNNVANSLLLAA 172 (304)
T ss_pred HHHHhCCCCEEeCCCCCCChHH--HHHHHHHHHHH------------------hC-CcCCcEEEEEeCCCccHHHHHHHH
Confidence 3456678999999765555543 33333333221 12 278899999998 78999999999
Q ss_pred hhCCCEEEEEcCCC--C-HHH----HHhcCcc--c-cChhhhccCCCEEEEec----CCch---h-----hHhhccHHHH
Q psy6348 118 QAFGMKVIGFDPMV--S-VED----AAKLNIA--S-LGLEDIWPLADYITVHT----PLIP---Q-----TKNLINAEVL 175 (333)
Q Consensus 118 ~~~G~~V~~~d~~~--~-~~~----a~~~gv~--~-~~l~ell~~aDvV~l~~----P~t~---~-----t~~li~~~~~ 175 (333)
..+|++|....|.. . .+. +++.|.. . .++++.++++|+|..-. .... + -.--++++.+
T Consensus 173 ~~~g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~l 252 (304)
T PRK00779 173 ALLGFDLRVATPKGYEPDPEIVEKIAKETGASIEVTHDPKEAVKGADVVYTDVWVSMGQEAEAEERLKAFAPYQVNEELM 252 (304)
T ss_pred HHcCCEEEEECCcccCCCHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEecCccccccchhHHHHHHHhcccCCCHHHH
Confidence 99999999988754 1 122 3445643 2 37999999999998742 1100 1 1122456667
Q ss_pred hccCCCcEEEEc
Q psy6348 176 KKCKKGVRVVNV 187 (333)
Q Consensus 176 ~~mk~gailIN~ 187 (333)
+.+|+++++..+
T Consensus 253 ~~~~~~~ivmHp 264 (304)
T PRK00779 253 ALAKPDAIFMHC 264 (304)
T ss_pred HhcCCCeEEecC
Confidence 777777777776
No 254
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=96.91 E-value=0.014 Score=56.08 Aligned_cols=128 Identities=25% Similarity=0.219 Sum_probs=82.9
Q ss_pred hhHhhCCcEEEECCC-CCchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCCCEEEEEecC---hHHHHHH
Q psy6348 39 TAATRKGVLVLNAPG-GNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLG---RIGREVA 114 (333)
Q Consensus 39 ~aa~~~gI~V~n~p~-~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIGlG---~IG~~vA 114 (333)
+.+..-+|+|+|.-. ....++-- ++=++.+.++ .| .+.|+||++||-| ++..+++
T Consensus 111 ~~a~~s~vPVINa~~g~~~HPtQ~--LaDl~Ti~e~------------------~g-~l~g~~va~vGD~~~~~v~~Sl~ 169 (301)
T TIGR00670 111 LAAEVSEVPVINAGDGSNQHPTQT--LLDLYTIYEE------------------FG-RLDGLKIALVGDLKYGRTVHSLA 169 (301)
T ss_pred HHHhhCCCCEEeCCCCCCCCcHHH--HHHHHHHHHH------------------hC-CCCCCEEEEEccCCCCcHHHHHH
Confidence 335557899999964 33455432 2223322221 12 3789999999995 9999999
Q ss_pred HHHhhCCCEEEEEcCCC---CH---HHHHhcCccc---cChhhhccCCCEEEEecCC------chhh-----HhhccHHH
Q psy6348 115 LRMQAFGMKVIGFDPMV---SV---EDAAKLNIAS---LGLEDIWPLADYITVHTPL------IPQT-----KNLINAEV 174 (333)
Q Consensus 115 ~~l~~~G~~V~~~d~~~---~~---~~a~~~gv~~---~~l~ell~~aDvV~l~~P~------t~~t-----~~li~~~~ 174 (333)
..+..+|++|....|.. +. +.+++.|... .++++.+++||+|..-.-. .++. .--++++.
T Consensus 170 ~~~a~~g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~~a~~~aDvvyt~~~~~er~~~~~~~~~~~~~y~v~~el 249 (301)
T TIGR00670 170 EALTRFGVEVYLISPEELRMPKEILEELKAKGIKVRETESLEEVIDEADVLYVTRIQKERFPDPEEYEKYKGSYGITLER 249 (301)
T ss_pred HHHHHcCCEEEEECCccccCCHHHHHHHHHcCCEEEEECCHHHHhCCCCEEEECCccccccCCHHHHHHHhcCCeECHHH
Confidence 99999999999988754 21 2233446433 3789999999999874210 0010 11235667
Q ss_pred HhccCCCcEEEEc
Q psy6348 175 LKKCKKGVRVVNV 187 (333)
Q Consensus 175 ~~~mk~gailIN~ 187 (333)
++.+++++++..|
T Consensus 250 l~~a~~~ai~mHc 262 (301)
T TIGR00670 250 LEAAKKGVIIMHP 262 (301)
T ss_pred HhhcCCCCEEECC
Confidence 7777888888777
No 255
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=96.89 E-value=0.014 Score=56.13 Aligned_cols=128 Identities=17% Similarity=0.140 Sum_probs=84.2
Q ss_pred hhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCCCEEEEEec-ChHHHHHHHHH
Q psy6348 39 TAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGL-GRIGREVALRM 117 (333)
Q Consensus 39 ~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIGl-G~IG~~vA~~l 117 (333)
+.+..-+|+|+|+-+....++- +++=++.+.++ .| .+.|.||+++|= +++-++++..+
T Consensus 110 ~~a~~~~vPVINa~~~~~HPtQ--aL~Dl~Ti~e~------------------~g-~l~g~~v~~vGd~~~v~~Sl~~~l 168 (304)
T TIGR00658 110 ELAKYASVPVINGLTDLFHPCQ--ALADLLTIIEH------------------FG-KLKGVKVVYVGDGNNVCNSLMLAG 168 (304)
T ss_pred HHHHhCCCCEEECCCCCCChHH--HHHHHHHHHHH------------------hC-CCCCcEEEEEeCCCchHHHHHHHH
Confidence 4456678999999665555554 23323333221 12 278999999997 78889999999
Q ss_pred hhCCCEEEEEcCCC---CHHH-------HHhcCcc--c-cChhhhccCCCEEEEec--CCc-----hh-----hHhhccH
Q psy6348 118 QAFGMKVIGFDPMV---SVED-------AAKLNIA--S-LGLEDIWPLADYITVHT--PLI-----PQ-----TKNLINA 172 (333)
Q Consensus 118 ~~~G~~V~~~d~~~---~~~~-------a~~~gv~--~-~~l~ell~~aDvV~l~~--P~t-----~~-----t~~li~~ 172 (333)
..+|++|....|.. +... +.+.|.. . .++++.+++||+|..-. ... ++ ..-.+++
T Consensus 169 ~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~~w~~~~~~~~~~~~~~~~~~y~l~~ 248 (304)
T TIGR00658 169 AKLGMDVVVATPEGYEPDADIVKKAQEIAKENGGSVELTHDPVEAVKGADVIYTDVWVSMGEEDKKEERLKLFRPYQVNE 248 (304)
T ss_pred HHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcCcccCccccccHHHHHHhcCCcCCH
Confidence 99999999988754 1111 2334532 2 37999999999999843 100 01 1124577
Q ss_pred HHHhccCCCcEEEEc
Q psy6348 173 EVLKKCKKGVRVVNV 187 (333)
Q Consensus 173 ~~~~~mk~gailIN~ 187 (333)
+.++.+|+++++..+
T Consensus 249 ~~l~~~~~~~ivmHp 263 (304)
T TIGR00658 249 ELMELAKPEVIFMHC 263 (304)
T ss_pred HHHhhcCCCCEEECC
Confidence 777778888888777
No 256
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=96.89 E-value=0.0041 Score=59.67 Aligned_cols=87 Identities=14% Similarity=0.120 Sum_probs=62.5
Q ss_pred CCEEEEEecChHHHHHHHHHhh-CCC-EEEEEcCCCCH--HHHHh----cCcc--cc-ChhhhccCCCEEEEecCCchhh
Q psy6348 98 GKTLAVLGLGRIGREVALRMQA-FGM-KVIGFDPMVSV--EDAAK----LNIA--SL-GLEDIWPLADYITVHTPLIPQT 166 (333)
Q Consensus 98 gktvGIIGlG~IG~~vA~~l~~-~G~-~V~~~d~~~~~--~~a~~----~gv~--~~-~l~ell~~aDvV~l~~P~t~~t 166 (333)
-+++||||.|..|...++.+.. +.. +|.+|+|+... +.+++ .|+. .+ +.++++.+||+|+.++|. +
T Consensus 117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s---~ 193 (301)
T PRK06407 117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNS---D 193 (301)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCC---C
Confidence 4799999999999988877764 343 79999998733 11222 2432 23 799999999999999873 4
Q ss_pred HhhccHHHHhccCCCcEEEEccCC
Q psy6348 167 KNLINAEVLKKCKKGVRVVNVARG 190 (333)
Q Consensus 167 ~~li~~~~~~~mk~gailIN~aRg 190 (333)
..++..+. +|||+.+.-++..
T Consensus 194 ~P~~~~~~---l~pg~hV~aiGs~ 214 (301)
T PRK06407 194 TPIFNRKY---LGDEYHVNLAGSN 214 (301)
T ss_pred CcEecHHH---cCCCceEEecCCC
Confidence 56776654 5898777766543
No 257
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=96.89 E-value=0.0019 Score=63.12 Aligned_cols=61 Identities=38% Similarity=0.474 Sum_probs=46.9
Q ss_pred CCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHH--HhcCc--cc---cChhhhccCCCEEEE
Q psy6348 98 GKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDA--AKLNI--AS---LGLEDIWPLADYITV 158 (333)
Q Consensus 98 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a--~~~gv--~~---~~l~ell~~aDvV~l 158 (333)
++||||||-|..|+.++...+.+|++|++.||......+ ...-+ .+ ..+.++.++||+|+.
T Consensus 1 ~~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT~ 68 (375)
T COG0026 1 MKTVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPAAQVADRVIVAAYDDPEALRELAAKCDVITY 68 (375)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCchhhcccceeecCCCCHHHHHHHHhhCCEEEE
Confidence 479999999999999999999999999999987733211 11111 11 147889999999986
No 258
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=96.89 E-value=0.0042 Score=57.07 Aligned_cols=65 Identities=28% Similarity=0.323 Sum_probs=48.9
Q ss_pred CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HH-HH-hcCcccc--------Chhhh-ccCCCEEEEecCCc
Q psy6348 99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-ED-AA-KLNIASL--------GLEDI-WPLADYITVHTPLI 163 (333)
Q Consensus 99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~-a~-~~gv~~~--------~l~el-l~~aDvV~l~~P~t 163 (333)
+++.|+|+|++|..+|+.|...|++|+..|..... +. .. +.+...+ .|.++ +.++|+++.++...
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d 77 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGND 77 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCCC
Confidence 58999999999999999999999999999986633 22 11 2333221 35555 78899999998743
No 259
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=96.88 E-value=0.019 Score=56.13 Aligned_cols=130 Identities=14% Similarity=0.154 Sum_probs=80.2
Q ss_pred hHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCCCEEEEEec-ChHHHHHHHHHh
Q psy6348 40 AATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGL-GRIGREVALRMQ 118 (333)
Q Consensus 40 aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIGl-G~IG~~vA~~l~ 118 (333)
.+...+|+|+|.-+....++- +++=++.+.+++ | .|..+.|++|++||= .++..+++..+.
T Consensus 114 ~a~~~~vPVINa~~~~~HPtQ--aLaDl~Ti~e~~---------g-------~g~~l~glkv~~vGD~~~v~~Sl~~~~~ 175 (338)
T PRK02255 114 LAKYATVPVINGMSDYNHPTQ--ELGDLFTMIEHL---------P-------EGKKLEDCKVVFVGDATQVCVSLMFIAT 175 (338)
T ss_pred HHHhCCCCEEECCCCCCChHH--HHHHHHHHHHHh---------C-------CCCCCCCCEEEEECCCchHHHHHHHHHH
Confidence 455678999998665544543 222233332221 0 023588999999997 688888889999
Q ss_pred hCCCEEEEEcCCC---CHHH---H----HhcC--ccc-cChhhhccCCCEEEEec-----CCch--hh-------Hhhcc
Q psy6348 119 AFGMKVIGFDPMV---SVED---A----AKLN--IAS-LGLEDIWPLADYITVHT-----PLIP--QT-------KNLIN 171 (333)
Q Consensus 119 ~~G~~V~~~d~~~---~~~~---a----~~~g--v~~-~~l~ell~~aDvV~l~~-----P~t~--~t-------~~li~ 171 (333)
.+|++|..+.|.. ..+. + +..| +.. .++++.++++|+|..-+ .... .. .-.++
T Consensus 176 ~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvy~~~w~~~~~~~~~~~~r~~~~~~~y~v~ 255 (338)
T PRK02255 176 KMGMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVLVTDDVDEAVKDADFVYTDVWYGLYDAELSEEERMAIFYPKYQVT 255 (338)
T ss_pred hCCCEEEEECCCccccCHHHHHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEEcccHhhccchhhHHHHHHhhCCCceEC
Confidence 9999999998753 2111 1 1235 332 37999999999999833 1100 00 12345
Q ss_pred HHHHhccCCCcEEEEc
Q psy6348 172 AEVLKKCKKGVRVVNV 187 (333)
Q Consensus 172 ~~~~~~mk~gailIN~ 187 (333)
++.++.+|+++++..|
T Consensus 256 ~ell~~a~~~~ivmHp 271 (338)
T PRK02255 256 PELMAKAGPHAKFMHC 271 (338)
T ss_pred HHHHhccCCCCEEeCC
Confidence 5566666666666665
No 260
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.87 E-value=0.0026 Score=64.96 Aligned_cols=109 Identities=18% Similarity=0.177 Sum_probs=68.8
Q ss_pred cCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCC-HHHHHhcCcccc---ChhhhccCCCEEEEecCCchhhH----
Q psy6348 96 LYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVS-VEDAAKLNIASL---GLEDIWPLADYITVHTPLIPQTK---- 167 (333)
Q Consensus 96 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~gv~~~---~l~ell~~aDvV~l~~P~t~~t~---- 167 (333)
+.|+++.|+|+|..|.+.++.|+..|++|+++|.... .+.+++.|+... ...+.++++|+|+..-.-.+...
T Consensus 10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~l~~~D~VV~SpGi~~~~p~~~~ 89 (488)
T PRK03369 10 LPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERGVATVSTSDAVQQIADYALVVTSPGFRPTAPVLAA 89 (488)
T ss_pred cCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCCEEEcCcchHhHhhcCCEEEECCCCCCCCHHHHH
Confidence 4689999999999999999999999999999996542 223455576543 23455678998887642222111
Q ss_pred ------hhccHHHHh-cc-C------C-CcEEEEccCCcccchHhHHhhhhc
Q psy6348 168 ------NLINAEVLK-KC-K------K-GVRVVNVARGGIVDENALLDSLKC 204 (333)
Q Consensus 168 ------~li~~~~~~-~m-k------~-gailIN~aRg~~vd~~aL~~aL~~ 204 (333)
.++++-++. .+ + + ..+-|--+-|+--...-+...|+.
T Consensus 90 a~~~gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~ 141 (488)
T PRK03369 90 AAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIA 141 (488)
T ss_pred HHHCCCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHH
Confidence 122222221 11 1 2 234444456777777767777765
No 261
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=96.87 E-value=0.0044 Score=62.02 Aligned_cols=66 Identities=17% Similarity=0.176 Sum_probs=49.9
Q ss_pred CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHHh-cCcccc--------Chhhh-ccCCCEEEEecCCch
Q psy6348 99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAAK-LNIASL--------GLEDI-WPLADYITVHTPLIP 164 (333)
Q Consensus 99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~-~gv~~~--------~l~el-l~~aDvV~l~~P~t~ 164 (333)
+++.|+|+|.+|+.+|+.|...|++|+++|+.... +..++ .++... .++++ +.++|.|+++++...
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~~ 77 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDSDE 77 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCChH
Confidence 47999999999999999999999999999986532 23333 444321 34555 789999999998543
No 262
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=96.86 E-value=0.0054 Score=57.26 Aligned_cols=89 Identities=18% Similarity=0.222 Sum_probs=71.9
Q ss_pred HHHHHHHHhhCCCEEEEEcCCCC---H---HHHHhcCcccc-ChhhhccCCCEEEEecCCchhhHhhccHHHHhccCCCc
Q psy6348 110 GREVALRMQAFGMKVIGFDPMVS---V---EDAAKLNIASL-GLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGV 182 (333)
Q Consensus 110 G~~vA~~l~~~G~~V~~~d~~~~---~---~~a~~~gv~~~-~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~mk~ga 182 (333)
|..+|-.+...|+.|+..||+.+ . +..++.|++.+ +-.+..+.+.+.++.+|.-..|-++. ++.+.+++.|+
T Consensus 33 Ga~mAiefAeAGHDVVLaePn~d~~dd~~w~~vedAGV~vv~dD~eaa~~~Ei~VLFTPFGk~T~~Ia-rei~~hvpEgA 111 (340)
T COG4007 33 GARMAIEFAEAGHDVVLAEPNRDIMDDEHWKRVEDAGVEVVSDDAEAAEHGEIHVLFTPFGKATFGIA-REILEHVPEGA 111 (340)
T ss_pred chHHHHHHHHcCCcEEeecCCccccCHHHHHHHHhcCcEEecCchhhhhcceEEEEecccchhhHHHH-HHHHhhCcCCc
Confidence 67899999999999999999763 2 34466788877 45678899999999999988888876 78899999999
Q ss_pred EEEEccCCcccchHhHHhhh
Q psy6348 183 RVVNVARGGIVDENALLDSL 202 (333)
Q Consensus 183 ilIN~aRg~~vd~~aL~~aL 202 (333)
++.|+..-+.+ .|+..|
T Consensus 112 VicnTCT~sp~---vLy~~L 128 (340)
T COG4007 112 VICNTCTVSPV---VLYYSL 128 (340)
T ss_pred EecccccCchh---HHHHHh
Confidence 99999886554 345555
No 263
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=96.85 E-value=0.042 Score=54.69 Aligned_cols=204 Identities=16% Similarity=0.117 Sum_probs=129.1
Q ss_pred cceEEEcccCcC--ccChhhH--------hhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCC
Q psy6348 23 LQVVGRAGTGVD--NIDLTAA--------TRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYT 92 (333)
Q Consensus 23 Lk~I~~~g~G~d--~iD~~aa--------~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~ 92 (333)
.|.+.....|++ .||-..| .+..|+|+|+.- ..+|=.+++-+++.+| ..
T Consensus 135 Vkal~p~FgginLedi~ap~cf~ie~~lr~~~~IPvFhDDq---qGTaiv~lA~llnalk------------------~~ 193 (432)
T COG0281 135 VKALEPTFGGINLEDIDAPRCFAIEERLRYRMNIPVFHDDQ---QGTAIVTLAALLNALK------------------LT 193 (432)
T ss_pred HHHhhhcCCCcceeecccchhhHHHHHHhhcCCCCcccccc---cHHHHHHHHHHHHHHH------------------Hh
Confidence 455555555554 3333333 346799999853 4566668888888776 35
Q ss_pred ccccCCCEEEEEecChHHHHHHHHHhhCCC---EEEEEcCCC--C--HHH----------HHhcCccccChhhhccCCCE
Q psy6348 93 GTELYGKTLAVLGLGRIGREVALRMQAFGM---KVIGFDPMV--S--VED----------AAKLNIASLGLEDIWPLADY 155 (333)
Q Consensus 93 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~---~V~~~d~~~--~--~~~----------a~~~gv~~~~l~ell~~aDv 155 (333)
|..|...+|.+.|.|.-|-.+++.+++.|+ +|+.+|+.- . .+. +.+..-.+.. ++.+..+|+
T Consensus 194 gk~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a~~~~~~~~~-~~~~~~adv 272 (432)
T COG0281 194 GKKLKDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRKGLLYDGREDLTMNQKKYAKAIEDTGERTL-DLALAGADV 272 (432)
T ss_pred CCCccceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecCCcccCCCcccccchHHHHHHHhhhccccc-cccccCCCE
Confidence 788999999999999999999999999998 589888652 1 110 0000001111 568889998
Q ss_pred EEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcC-CceEEEeccCCCCCCCCccchhhcCCCcE
Q psy6348 156 ITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCG-HCGGAALDVFCEEPPKSEQTFELIKHPKV 234 (333)
Q Consensus 156 V~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g-~i~gaalDV~~~EP~~~~~~~~L~~~pnv 234 (333)
++=+- ..|.+.++.++.|.+.+++.=+|-...--..+.+.+-..| .|.+ ..-|.. |- +.-|+
T Consensus 273 ~iG~S-----~~G~~t~e~V~~Ma~~PiIfalaNP~pEi~Pe~a~~~~~~aaiva------TGrsd~-----Pn-QvNNv 335 (432)
T COG0281 273 LIGVS-----GVGAFTEEMVKEMAKHPIIFALANPTPEITPEDAKEWGDGAAIVA------TGRSDY-----PN-QVNNV 335 (432)
T ss_pred EEEcC-----CCCCcCHHHHHHhccCCEEeecCCCCccCCHHHHhhcCCCCEEEE------eCCCCC-----cc-cccce
Confidence 87652 2399999999999999999988876632222222222222 3322 112211 11 56799
Q ss_pred EEccCCCCCc-----HHHHHHHHHHHHHHHHHhHcC
Q psy6348 235 IVTPHLGAST-----KEAQIRVAVEIAEQFIALANT 265 (333)
Q Consensus 235 i~TPHi~~~t-----~ea~~~~~~~~~~~i~~~~~~ 265 (333)
++-|.|+--. ..--+.|-..+++.|.++...
T Consensus 336 L~FPgIfrGaLd~rA~~ItdeM~~AAa~AiA~~~~~ 371 (432)
T COG0281 336 LIFPGIFRGALDVRAKTITDEMKIAAAEAIADLARE 371 (432)
T ss_pred eEcchhhhhhHhhccccCCHHHHHHHHHHHHhhccc
Confidence 9999985211 112234666677777776554
No 264
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=96.85 E-value=0.01 Score=57.91 Aligned_cols=130 Identities=17% Similarity=0.141 Sum_probs=82.0
Q ss_pred hhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCCCEEEEEecC--hHHHHHHHH
Q psy6348 39 TAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLG--RIGREVALR 116 (333)
Q Consensus 39 ~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIGlG--~IG~~vA~~ 116 (333)
+.+...+|+|+|.-+....++- +++=++.+.++ +.+..+.|++|++||-+ ++..+++..
T Consensus 116 ~~a~~~~vPVINa~~~~~HPtQ--aLaDl~Ti~e~-----------------~g~~~l~g~~ia~vGD~~~~v~~Sl~~~ 176 (336)
T PRK03515 116 TLAEYAGVPVWNGLTNEFHPTQ--LLADLLTMQEH-----------------LPGKAFNEMTLAYAGDARNNMGNSLLEA 176 (336)
T ss_pred HHHHhCCCCEEECCCCCCChHH--HHHHHHHHHHH-----------------hCCCCcCCCEEEEeCCCcCcHHHHHHHH
Confidence 4456678999998665555544 33333333221 11124789999999976 689999999
Q ss_pred HhhCCCEEEEEcCCC---CH-------HHHHhcCc--cc-cChhhhccCCCEEEEecCCch-------h------hHhhc
Q psy6348 117 MQAFGMKVIGFDPMV---SV-------EDAAKLNI--AS-LGLEDIWPLADYITVHTPLIP-------Q------TKNLI 170 (333)
Q Consensus 117 l~~~G~~V~~~d~~~---~~-------~~a~~~gv--~~-~~l~ell~~aDvV~l~~P~t~-------~------t~~li 170 (333)
+..+|+++....|.. .. +.+++.|. .. .++++.++++|+|..-+=... . ..-.+
T Consensus 177 ~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~~~~d~~ea~~~aDvvytd~W~sm~~~~~~~~er~~~~~~y~v 256 (336)
T PRK03515 177 AALTGLDLRLVAPKACWPEAALVTECRALAQKNGGNITLTEDIAEGVKGADFIYTDVWVSMGEPKEVWAERIALLRPYQV 256 (336)
T ss_pred HHHcCCEEEEECCchhcCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEecCcccCcchhHHHHHHHHhccCCcc
Confidence 999999999988754 11 11233453 33 379999999999987421000 0 01123
Q ss_pred cHHHHhcc-CCCcEEEEc
Q psy6348 171 NAEVLKKC-KKGVRVVNV 187 (333)
Q Consensus 171 ~~~~~~~m-k~gailIN~ 187 (333)
+++.++.. |+++++..|
T Consensus 257 ~~~lm~~a~k~~~ivmHc 274 (336)
T PRK03515 257 NSKMMQLTGNPQVKFLHC 274 (336)
T ss_pred CHHHHhcccCCCCEEECC
Confidence 55666663 677777776
No 265
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=96.84 E-value=0.0035 Score=57.17 Aligned_cols=89 Identities=24% Similarity=0.179 Sum_probs=65.3
Q ss_pred ccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHH---HhcCccc----cChhhhccCCCEEEEecCCchh
Q psy6348 93 GTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDA---AKLNIAS----LGLEDIWPLADYITVHTPLIPQ 165 (333)
Q Consensus 93 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a---~~~gv~~----~~l~ell~~aDvV~l~~P~t~~ 165 (333)
..++.||++.|||-|.+|..=++.+...|.+|+++.+...++.. ...++.. ...++ +..+++|+.+++..+
T Consensus 7 ~~~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~~~~~~~~-~~~~~lviaAt~d~~- 84 (210)
T COG1648 7 FLDLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIEREFDAED-LDDAFLVIAATDDEE- 84 (210)
T ss_pred EEEcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcchhhcccChhh-hcCceEEEEeCCCHH-
Confidence 46799999999999999999999999999999999998744322 2222222 23333 344999999987543
Q ss_pred hHhhccHHHHhccCCCcEEEEc
Q psy6348 166 TKNLINAEVLKKCKKGVRVVNV 187 (333)
Q Consensus 166 t~~li~~~~~~~mk~gailIN~ 187 (333)
+++..+..+++-.++||+
T Consensus 85 ----ln~~i~~~a~~~~i~vNv 102 (210)
T COG1648 85 ----LNERIAKAARERRILVNV 102 (210)
T ss_pred ----HHHHHHHHHHHhCCceec
Confidence 556666666676788887
No 266
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=96.84 E-value=0.0061 Score=49.23 Aligned_cols=84 Identities=26% Similarity=0.394 Sum_probs=56.6
Q ss_pred EEEEecChHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHhcCcccc-----C---hhh-hccCCCEEEEecCCchhhHhhc
Q psy6348 101 LAVLGLGRIGREVALRMQAFGMKVIGFDPMV-SVEDAAKLNIASL-----G---LED-IWPLADYITVHTPLIPQTKNLI 170 (333)
Q Consensus 101 vGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~gv~~~-----~---l~e-ll~~aDvV~l~~P~t~~t~~li 170 (333)
+-|+|+|++|+.+++.|++.+.+|++.|... ..+.+.+.|+... + +++ -+.++|.++++++... .++.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~--~n~~ 78 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDDE--ENLL 78 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSHH--HHHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCHH--HHHH
Confidence 4699999999999999999777999999876 3345556665432 2 222 2678999999998543 3333
Q ss_pred cHHHHhccCCCcEEEE
Q psy6348 171 NAEVLKKCKKGVRVVN 186 (333)
Q Consensus 171 ~~~~~~~mk~gailIN 186 (333)
-...++.+-+...++-
T Consensus 79 ~~~~~r~~~~~~~ii~ 94 (116)
T PF02254_consen 79 IALLARELNPDIRIIA 94 (116)
T ss_dssp HHHHHHHHTTTSEEEE
T ss_pred HHHHHHHHCCCCeEEE
Confidence 3444455555555553
No 267
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=96.83 E-value=0.0045 Score=51.49 Aligned_cols=97 Identities=25% Similarity=0.341 Sum_probs=57.3
Q ss_pred EEEEEec-ChHHHHHHHHHhh-CCCEEEE-EcCCCCHHH----HH-----hcCccc-cChhhhccCCCEEEEecCCchh-
Q psy6348 100 TLAVLGL-GRIGREVALRMQA-FGMKVIG-FDPMVSVED----AA-----KLNIAS-LGLEDIWPLADYITVHTPLIPQ- 165 (333)
Q Consensus 100 tvGIIGl-G~IG~~vA~~l~~-~G~~V~~-~d~~~~~~~----a~-----~~gv~~-~~l~ell~~aDvV~l~~P~t~~- 165 (333)
+|+|+|+ |+||+.+++.+.. -|+++.+ +|+..+... .. ..|+.. .++++++.++|+++-.. +++
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT--~p~~ 79 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFT--NPDA 79 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES---HHH
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcC--ChHH
Confidence 7999999 9999999999987 7888655 566542111 11 223333 37999999999998876 232
Q ss_pred hHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhh
Q psy6348 166 TKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSL 202 (333)
Q Consensus 166 t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL 202 (333)
+...+ +.. ++.|.-+|-...|---.+.+.++.+
T Consensus 80 ~~~~~-~~~---~~~g~~~ViGTTG~~~~~~~~l~~~ 112 (124)
T PF01113_consen 80 VYDNL-EYA---LKHGVPLVIGTTGFSDEQIDELEEL 112 (124)
T ss_dssp HHHHH-HHH---HHHT-EEEEE-SSSHHHHHHHHHHH
T ss_pred hHHHH-HHH---HhCCCCEEEECCCCCHHHHHHHHHH
Confidence 22222 222 3447777776677643443444443
No 268
>KOG2653|consensus
Probab=96.82 E-value=0.0065 Score=59.07 Aligned_cols=154 Identities=17% Similarity=0.194 Sum_probs=110.3
Q ss_pred CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH--HHH--HhcCcc---ccChhhh---ccCCCEEEEecCCchhhHh
Q psy6348 99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV--EDA--AKLNIA---SLGLEDI---WPLADYITVHTPLIPQTKN 168 (333)
Q Consensus 99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~--~~a--~~~gv~---~~~l~el---l~~aDvV~l~~P~t~~t~~ 168 (333)
..+|+||++.||+.++......|+.|.+|+|..+. +.. +..|.. ..|++++ +++--+|++.+-.-.-...
T Consensus 7 ~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak~~~i~ga~S~ed~v~klk~PR~iillvkAG~pVD~ 86 (487)
T KOG2653|consen 7 ADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAKGTKIIGAYSLEDFVSKLKKPRVIILLVKAGAPVDQ 86 (487)
T ss_pred cchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhhcCCcccCCCCHHHHHHhcCCCcEEEEEeeCCCcHHH
Confidence 46899999999999999999999999999998754 111 122332 2377776 4667788888765444455
Q ss_pred hccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCccchhhcCCCcEEEccCCCCCcHHHH
Q psy6348 169 LINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQ 248 (333)
Q Consensus 169 li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~L~~~pnvi~TPHi~~~t~ea~ 248 (333)
+| +++..+|.+|-++|+-+....-|...=.+.|....|-..+.-|...|--.. .-|.+ +-|-+.+++
T Consensus 87 ~I-~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR-------~GPSl-----MpGg~~~Aw 153 (487)
T KOG2653|consen 87 FI-EELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGAR-------YGPSL-----MPGGSKEAW 153 (487)
T ss_pred HH-HHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccc-------cCCcc-----CCCCChHHH
Confidence 55 677789999999999999999999999999988888889999988775221 11221 224466777
Q ss_pred HHHHHHHHHHHHH-hHcCC
Q psy6348 249 IRVAVEIAEQFIA-LANTN 266 (333)
Q Consensus 249 ~~~~~~~~~~i~~-~~~~~ 266 (333)
.++- .+.+.|.. ..+++
T Consensus 154 p~ik-~ifq~iaakv~~~e 171 (487)
T KOG2653|consen 154 PHIK-DIFQKIAAKVSDGE 171 (487)
T ss_pred HHHH-HHHHHHHHHhcCCC
Confidence 7663 34455544 33444
No 269
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=96.80 E-value=0.0044 Score=59.18 Aligned_cols=110 Identities=16% Similarity=0.220 Sum_probs=63.6
Q ss_pred EEEEecChHHHHHHHHHhhCCC-EEEEEcCCCCHHHHHhc---------C----ccc-cChhhhccCCCEEEEecCC--c
Q psy6348 101 LAVLGLGRIGREVALRMQAFGM-KVIGFDPMVSVEDAAKL---------N----IAS-LGLEDIWPLADYITVHTPL--I 163 (333)
Q Consensus 101 vGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~~~a~~~---------g----v~~-~~l~ell~~aDvV~l~~P~--t 163 (333)
|+|||.|.||..+|..+...|. +|+.+|.......+... + +.. .+. +.+++||+|+++... .
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~-~~l~dADiVIit~g~p~~ 79 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDY-EDIAGSDVVVITAGIPRK 79 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCH-HHhCCCCEEEEecCCCCC
Confidence 6899999999999998886665 99999987643221111 1 111 133 458999999998731 1
Q ss_pred h---------hhHhhcc--HHHHhccCCCcEEEEccCCcccchHhHHhhh--hcCCceEEE
Q psy6348 164 P---------QTKNLIN--AEVLKKCKKGVRVVNVARGGIVDENALLDSL--KCGHCGGAA 211 (333)
Q Consensus 164 ~---------~t~~li~--~~~~~~mk~gailIN~aRg~~vd~~aL~~aL--~~g~i~gaa 211 (333)
+ ++..++. -+.+....+++++|+.+-..-+-...+.+.. ...++.|.+
T Consensus 80 ~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~di~t~~~~~~s~~~~~rviGlg 140 (300)
T cd01339 80 PGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLDVMTYVAYKASGFPRNRVIGMA 140 (300)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCHHHEEEec
Confidence 1 1111111 1122334467788888744333333444432 223566666
No 270
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.79 E-value=0.0041 Score=62.05 Aligned_cols=107 Identities=18% Similarity=0.157 Sum_probs=63.8
Q ss_pred CCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHH-HhcCccc-cChhhhccCCCEEEEecCCchhhHh-------
Q psy6348 98 GKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDA-AKLNIAS-LGLEDIWPLADYITVHTPLIPQTKN------- 168 (333)
Q Consensus 98 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a-~~~gv~~-~~l~ell~~aDvV~l~~P~t~~t~~------- 168 (333)
.++|.|||+|.+|.++|+.|+..|++|.++|+....... ...+-.. ...+.+..++|+++.+.+..+...-
T Consensus 3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvV~s~gi~~~~~~l~~A~~~ 82 (418)
T PRK00683 3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQSCPYIHERYLENAEEFPEQVDLVVRSPGIKKEHPWVQAAIAS 82 (418)
T ss_pred CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccchhHHHhhhhcCCcHHHhcCCCEEEECCCCCCCcHHHHHHHHC
Confidence 478999999999999999999999999999986532111 0000011 1233445779988888754432111
Q ss_pred ---hccHHHHh--c--cCC-CcEEEEccCCcccchHhHHhhhhc
Q psy6348 169 ---LINAEVLK--K--CKK-GVRVVNVARGGIVDENALLDSLKC 204 (333)
Q Consensus 169 ---li~~~~~~--~--mk~-gailIN~aRg~~vd~~aL~~aL~~ 204 (333)
++.+..+. . +.+ ..+=|--+-|+--...=|...|+.
T Consensus 83 g~~vv~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~ml~~iL~~ 126 (418)
T PRK00683 83 HIPVVTDIQLAFQTPEFTRYPSLGITGSTGKTTTILFLEHLLKR 126 (418)
T ss_pred CCcEEEHHHHHHhhhhcCCCCEEEEECCCChHHHHHHHHHHHHH
Confidence 22332221 1 112 234444456776666667777764
No 271
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=96.79 E-value=0.0041 Score=51.30 Aligned_cols=85 Identities=18% Similarity=0.300 Sum_probs=50.7
Q ss_pred EEEEEe-cChHHHHHHHHHhh-CCCEEEE-EcCCCCH--HHHHhc----Ccccc---C-hhhhccCCCEEEEecCCchhh
Q psy6348 100 TLAVLG-LGRIGREVALRMQA-FGMKVIG-FDPMVSV--EDAAKL----NIASL---G-LEDIWPLADYITVHTPLIPQT 166 (333)
Q Consensus 100 tvGIIG-lG~IG~~vA~~l~~-~G~~V~~-~d~~~~~--~~a~~~----gv~~~---~-l~ell~~aDvV~l~~P~t~~t 166 (333)
||+||| .|.+|+.+.++|.. ..+++.. +++..+. ...... +.... + ..+.+.++|+|++|+|.. .+
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~-~~ 79 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPHG-AS 79 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCHH-HH
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCchh-HH
Confidence 699999 99999999999875 4556544 4443311 111111 11111 1 223459999999999832 22
Q ss_pred HhhccHHHHhccCCCcEEEEccC
Q psy6348 167 KNLINAEVLKKCKKGVRVVNVAR 189 (333)
Q Consensus 167 ~~li~~~~~~~mk~gailIN~aR 189 (333)
..+. ... +++|..+|+.+.
T Consensus 80 ~~~~-~~~---~~~g~~ViD~s~ 98 (121)
T PF01118_consen 80 KELA-PKL---LKAGIKVIDLSG 98 (121)
T ss_dssp HHHH-HHH---HHTTSEEEESSS
T ss_pred HHHH-HHH---hhCCcEEEeCCH
Confidence 2221 222 578999999864
No 272
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=96.76 E-value=0.048 Score=58.43 Aligned_cols=160 Identities=11% Similarity=0.088 Sum_probs=110.3
Q ss_pred CCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCCCEEEEEecChHHHHHHHHHhhCCC-
Q psy6348 44 KGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGM- 122 (333)
Q Consensus 44 ~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~- 122 (333)
..|+|+|+. -..+|=-+++-+++..|- .|..+...++.|.|.|.-|-.+|+.+...|.
T Consensus 152 ~~ip~f~DD---~~GTa~v~lA~l~na~~~------------------~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~ 210 (752)
T PRK07232 152 MDIPVFHDD---QHGTAIISAAALLNALEL------------------VGKKIEDVKIVVSGAGAAAIACLNLLVALGAK 210 (752)
T ss_pred cCCCeeccc---cchHHHHHHHHHHHHHHH------------------hCCChhhcEEEEECccHHHHHHHHHHHHcCCC
Confidence 479999984 345666688888887772 3567888899999999999999999999998
Q ss_pred --EEEEEcCCC--C------HHHHHh-c--CccccChhhhccCCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccC
Q psy6348 123 --KVIGFDPMV--S------VEDAAK-L--NIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVAR 189 (333)
Q Consensus 123 --~V~~~d~~~--~------~~~a~~-~--gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aR 189 (333)
+++.+|+.- . ....+. + .-...+|.|+++.+|+++=. . +.+.+.++.++.|.+.+++.=.|.
T Consensus 211 ~~~i~~~D~~G~i~~~r~~~~~~~k~~~a~~~~~~~l~~~i~~~~v~iG~-s----~~g~~~~~~v~~M~~~piifalsN 285 (752)
T PRK07232 211 KENIIVCDSKGVIYKGRTEGMDEWKAAYAVDTDARTLAEAIEGADVFLGL-S----AAGVLTPEMVKSMADNPIIFALAN 285 (752)
T ss_pred cccEEEEcCCCeecCCCcccccHHHHHHhccCCCCCHHHHHcCCCEEEEc-C----CCCCCCHHHHHHhccCCEEEecCC
Confidence 788888542 0 011111 1 11224899999999987754 2 258999999999999999999998
Q ss_pred CcccchHhHHhhhhcCCceEEEeccCCCCCCCCccchhhcCCCcEEEccCCC
Q psy6348 190 GGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLG 241 (333)
Q Consensus 190 g~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~L~~~pnvi~TPHi~ 241 (333)
...--..+.+.....|.|.+-+ -...| . +.-|+++-|-++
T Consensus 286 P~~E~~p~~a~~~~~~~i~atG---rs~~p--n-------Q~NN~~~FPgi~ 325 (752)
T PRK07232 286 PDPEITPEEAKAVRPDAIIATG---RSDYP--N-------QVNNVLCFPYIF 325 (752)
T ss_pred CCccCCHHHHHHhcCCEEEEEC---CcCCC--C-------cccceeecchhh
Confidence 7753222222222224454333 11112 1 466899999875
No 273
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=96.75 E-value=0.036 Score=51.88 Aligned_cols=159 Identities=11% Similarity=0.090 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCCCEEEEEecChHHHHHHHHHhhCCC-----------EEEEE
Q psy6348 59 ACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGM-----------KVIGF 127 (333)
Q Consensus 59 vAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~-----------~V~~~ 127 (333)
+|--+++-+++.+| ..|..|...++.|+|.|..|-.+|+.+...+. +++.+
T Consensus 4 TaaV~lAgllnAlk------------------~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~v 65 (254)
T cd00762 4 TASVAVAGLLAALK------------------VTKKKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXV 65 (254)
T ss_pred hHHHHHHHHHHHHH------------------HhCCChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEE
Confidence 45557777887776 23567888999999999999999999987766 58888
Q ss_pred cCCC---------CHHHHH-----hcCccccChhhhcc--CCCEEEEecCCchhhHhhccHHHHhccC---CCcEEEEcc
Q psy6348 128 DPMV---------SVEDAA-----KLNIASLGLEDIWP--LADYITVHTPLIPQTKNLINAEVLKKCK---KGVRVVNVA 188 (333)
Q Consensus 128 d~~~---------~~~~a~-----~~gv~~~~l~ell~--~aDvV~l~~P~t~~t~~li~~~~~~~mk---~gailIN~a 188 (333)
|+.- ...... +..-...+|.|+++ +.|+++=.. ...++|.++.++.|. +..++.=.|
T Consensus 66 D~~Gll~~~r~~l~~~~~~~~~~~~~~~~~~~L~eav~~~kptvlIG~S----~~~g~ft~evv~~Ma~~~~~PIIFaLS 141 (254)
T cd00762 66 DRKGLLVKNRKETCPNEYHLARFANPERESGDLEDAVEAAKPDFLIGVS----RVGGAFTPEVIRAXAEINERPVIFALS 141 (254)
T ss_pred CCCCeEeCCCCccCHHHHHHHHHcCcccccCCHHHHHHhhCCCEEEEeC----CCCCCCCHHHHHHHhhcCCCCEEEECC
Confidence 8652 111111 11112248999999 999988642 335899999999998 899999999
Q ss_pred CCcccchHhHHhhhhc--C-CceEEEeccCCCCCCCCccchhhcCCCcEEEccCCC
Q psy6348 189 RGGIVDENALLDSLKC--G-HCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLG 241 (333)
Q Consensus 189 Rg~~vd~~aL~~aL~~--g-~i~gaalDV~~~EP~~~~~~~~L~~~pnvi~TPHi~ 241 (333)
....-.|-.=.++.+- | .|.+.+.-.+..+-.. .....-+.-|+++-|=++
T Consensus 142 NPt~~aE~tpe~a~~~t~G~ai~AtGspf~pv~~~g--~~~~~~Q~NN~~iFPGig 195 (254)
T cd00762 142 NPTSKAECTAEEAYTATEGRAIFASGSPFHPVELNG--GTYKPGQGNNLYIFPGVA 195 (254)
T ss_pred CcCCccccCHHHHHhhcCCCEEEEECCCCCCcccCC--ceeecccccceeeccchh
Confidence 8776333222233333 4 3444444332222211 111223677999999886
No 274
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=96.74 E-value=0.009 Score=60.29 Aligned_cols=123 Identities=24% Similarity=0.281 Sum_probs=78.0
Q ss_pred cCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-----HHHHhcCcccc---ChhhhccCCCEEEEecCCchhhH
Q psy6348 96 LYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-----EDAAKLNIASL---GLEDIWPLADYITVHTPLIPQTK 167 (333)
Q Consensus 96 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-----~~a~~~gv~~~---~l~ell~~aDvV~l~~P~t~~t~ 167 (333)
..+++|.|+|+|.-|.++|+.|+..|++|+++|..... ......++.+. ..++...++|+|+.. |.-+-+.
T Consensus 5 ~~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~S-PGi~~~~ 83 (448)
T COG0771 5 FQGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKS-PGIPPTH 83 (448)
T ss_pred ccCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccchhccccCCEEEEC-CCCCCCC
Confidence 44999999999999999999999999999999966533 11123454443 123678889999986 2222222
Q ss_pred hh-----------ccH-HHHhcc-CCCcEE-EEccCCcccchHhHHhhhhc--------CCceEEEeccCCCCC
Q psy6348 168 NL-----------INA-EVLKKC-KKGVRV-VNVARGGIVDENALLDSLKC--------GHCGGAALDVFCEEP 219 (333)
Q Consensus 168 ~l-----------i~~-~~~~~m-k~gail-IN~aRg~~vd~~aL~~aL~~--------g~i~gaalDV~~~EP 219 (333)
-+ +++ ++|-+. ++-.++ |.-+-|+--.+.-+...|++ |.|+..++|+.++++
T Consensus 84 p~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p~l~~~~~~~ 157 (448)
T COG0771 84 PLVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTPALELLEQAE 157 (448)
T ss_pred HHHHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCccHHHhhcccC
Confidence 22 222 233332 133343 33345665555555555554 668888999988744
No 275
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.73 E-value=0.0045 Score=62.08 Aligned_cols=110 Identities=22% Similarity=0.257 Sum_probs=70.2
Q ss_pred ccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHH------HHHhcCcccc---ChhhhccCCCEEEEecCCchh
Q psy6348 95 ELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVE------DAAKLNIASL---GLEDIWPLADYITVHTPLIPQ 165 (333)
Q Consensus 95 ~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~------~a~~~gv~~~---~l~ell~~aDvV~l~~P~t~~ 165 (333)
.+.+|++.|+|.|.+|.++|+.|...|++|+++|+..... ...+.|+... ..++....+|+|+.+.-..+.
T Consensus 2 ~~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vv~~~g~~~~ 81 (450)
T PRK14106 2 ELKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEEFLEGVDLVVVSPGVPLD 81 (450)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchhHhhcCCEEEECCCCCCC
Confidence 4679999999999999999999999999999999865221 1223355432 234566789999987543332
Q ss_pred hHhhc----------cH-HHHhc-cCCCcEEEEccCCcccchHhHHhhhhc
Q psy6348 166 TKNLI----------NA-EVLKK-CKKGVRVVNVARGGIVDENALLDSLKC 204 (333)
Q Consensus 166 t~~li----------~~-~~~~~-mk~gailIN~aRg~~vd~~aL~~aL~~ 204 (333)
..-+. .. +.+.. .+...+-|--+.|+--...-|...|+.
T Consensus 82 ~~~~~~a~~~~i~~~~~~~~~~~~~~~~vI~ITGS~GKTTt~~~l~~iL~~ 132 (450)
T PRK14106 82 SPPVVQAHKKGIEVIGEVELAYRFSKAPIVAITGTNGKTTTTTLLGEIFKN 132 (450)
T ss_pred CHHHHHHHHCCCcEEeHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHH
Confidence 22111 11 11222 232234444466777777777777764
No 276
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=96.72 E-value=0.0049 Score=60.28 Aligned_cols=91 Identities=18% Similarity=0.223 Sum_probs=57.3
Q ss_pred CEEEEEec-ChHHHHHHHHHhhC-CCEEEE-EcCCCCH-HHHH-hc----C-----ccccChhhhccCCCEEEEecCCch
Q psy6348 99 KTLAVLGL-GRIGREVALRMQAF-GMKVIG-FDPMVSV-EDAA-KL----N-----IASLGLEDIWPLADYITVHTPLIP 164 (333)
Q Consensus 99 ktvGIIGl-G~IG~~vA~~l~~~-G~~V~~-~d~~~~~-~~a~-~~----g-----v~~~~l~ell~~aDvV~l~~P~t~ 164 (333)
++|+|+|. |.+|+.+++.|... +.++.. +++..+. +... .. + +...+.++++.++|++++|+|..
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~alP~~- 79 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLALPHG- 79 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECCCch-
Confidence 47999998 99999999999876 678874 4654321 1111 11 1 11124556667899999999943
Q ss_pred hhHhhccHHHHhccCCCcEEEEccCCcccc
Q psy6348 165 QTKNLINAEVLKKCKKGVRVVNVARGGIVD 194 (333)
Q Consensus 165 ~t~~li~~~~~~~mk~gailIN~aRg~~vd 194 (333)
..+.+. ... .+.|..+|+.|..-=.+
T Consensus 80 ~s~~~~-~~~---~~~G~~VIDlS~~fR~~ 105 (346)
T TIGR01850 80 VSAELA-PEL---LAAGVKVIDLSADFRLK 105 (346)
T ss_pred HHHHHH-HHH---HhCCCEEEeCChhhhcC
Confidence 222222 111 35789999997543333
No 277
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=96.71 E-value=0.029 Score=54.65 Aligned_cols=130 Identities=15% Similarity=0.058 Sum_probs=83.9
Q ss_pred hhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCCCEEEEEecC--hHHHHHHHH
Q psy6348 39 TAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLG--RIGREVALR 116 (333)
Q Consensus 39 ~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIGlG--~IG~~vA~~ 116 (333)
+.+...+|+|+|.-+....++- +++=++.+.+++ .| .+.|+||++||-+ ++.++++..
T Consensus 116 ~~a~~s~vPVINa~~~~~HPtQ--aL~Dl~Ti~e~~-----------------~g-~l~g~kia~vGD~~~~v~~Sl~~~ 175 (332)
T PRK04284 116 TLAEYSGVPVWNGLTDEDHPTQ--VLADFLTAKEHL-----------------KK-PYKDIKFTYVGDGRNNVANALMQG 175 (332)
T ss_pred HHHHhCCCCEEECCCCCCChHH--HHHHHHHHHHHh-----------------cC-CcCCcEEEEecCCCcchHHHHHHH
Confidence 4455678999998666555554 333334333321 12 3789999999975 889999999
Q ss_pred HhhCCCEEEEEcCCC---CHH-------HHHhcCcc--c-cChhhhccCCCEEEEecCC--------chhh-----Hhhc
Q psy6348 117 MQAFGMKVIGFDPMV---SVE-------DAAKLNIA--S-LGLEDIWPLADYITVHTPL--------IPQT-----KNLI 170 (333)
Q Consensus 117 l~~~G~~V~~~d~~~---~~~-------~a~~~gv~--~-~~l~ell~~aDvV~l~~P~--------t~~t-----~~li 170 (333)
+..+|++|....|.. ... .+++.|.. . .++++.+++||+|..-.=. .++- .-.+
T Consensus 176 ~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvy~~~w~~~~~~~~~~~~~~~~~~~y~v 255 (332)
T PRK04284 176 AAIMGMDFHLVCPKELNPDDELLNKCKEIAAETGGKITITDDIDEGVKGSDVIYTDVWVSMGEPDEVWEERIKLLKPYQV 255 (332)
T ss_pred HHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEECCcccCccchhhHHHHHHhccCCcC
Confidence 999999999988753 111 12234532 2 3799999999999984210 0010 1224
Q ss_pred cHHHHhccC-CCcEEEEcc
Q psy6348 171 NAEVLKKCK-KGVRVVNVA 188 (333)
Q Consensus 171 ~~~~~~~mk-~gailIN~a 188 (333)
+++.++.+| +++++..|.
T Consensus 256 ~~e~l~~a~~~~~ivmHpl 274 (332)
T PRK04284 256 NKEMMKKTGNPNAIFEHCL 274 (332)
T ss_pred CHHHHhhcCCCCcEEECCC
Confidence 667777775 478888773
No 278
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.71 E-value=0.0043 Score=62.55 Aligned_cols=110 Identities=24% Similarity=0.306 Sum_probs=70.4
Q ss_pred ccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHHhcCccccCh-hhhccCCCEEEEe--cCCc-h----h
Q psy6348 95 ELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAAKLNIASLGL-EDIWPLADYITVH--TPLI-P----Q 165 (333)
Q Consensus 95 ~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~gv~~~~l-~ell~~aDvV~l~--~P~t-~----~ 165 (333)
++.|++|.|+|+|..|.+.|+.|+..|++|.++|..... ....+.|++.... .+-+.++|+|+.. +|.+ + .
T Consensus 6 ~~~~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~sp~i~~~~~~~~~~ 85 (460)
T PRK01390 6 GFAGKTVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRAKAAAAGITTADLRTADWSGFAALVLSPGVPLTHPKPHWV 85 (460)
T ss_pred ccCCCEEEEEeecHhHHHHHHHHHHCCCEEEEECCChhhHHHHHhcCccccCCChhHHcCCCEEEECCCCCccCCcccHH
Confidence 367899999999999999999999999999999976432 2234557654322 2335679988753 2211 1 1
Q ss_pred ---hHhh----ccHH-HHhc-c-----CCCcEEEEccCCcccchHhHHhhhhc
Q psy6348 166 ---TKNL----INAE-VLKK-C-----KKGVRVVNVARGGIVDENALLDSLKC 204 (333)
Q Consensus 166 ---t~~l----i~~~-~~~~-m-----k~gailIN~aRg~~vd~~aL~~aL~~ 204 (333)
++.. +++- .+.+ + +...+-|.-+.|+--...-|...|+.
T Consensus 86 v~~a~~~gi~i~~~~~~~~~~~~~~~~~~~vI~VTGT~GKTTTt~ll~~iL~~ 138 (460)
T PRK01390 86 VDLARAAGVEVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHILRE 138 (460)
T ss_pred HHHHHHcCCcEEeHHHHHHHHhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHh
Confidence 1111 3322 2222 2 23455566677888888878888875
No 279
>PRK12862 malic enzyme; Reviewed
Probab=96.71 E-value=0.052 Score=58.43 Aligned_cols=158 Identities=12% Similarity=0.064 Sum_probs=110.1
Q ss_pred CCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCCCEEEEEecChHHHHHHHHHhhCCC-
Q psy6348 44 KGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGM- 122 (333)
Q Consensus 44 ~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~- 122 (333)
.+|+|+|+.- ..+|=.+++-+++.+|- .|..+...++.|.|.|.-|..+|+.+...|.
T Consensus 160 ~~ip~f~DD~---~GTa~v~la~l~~a~~~------------------~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~ 218 (763)
T PRK12862 160 MKIPVFHDDQ---HGTAIIVAAALLNGLKL------------------VGKDIEDVKLVASGAGAAALACLDLLVSLGVK 218 (763)
T ss_pred CCCceEecCc---ccHHHHHHHHHHHHHHH------------------hCCChhhcEEEEEChhHHHHHHHHHHHHcCCC
Confidence 3699999843 45566688888887772 4567888999999999999999999999998
Q ss_pred --EEEEEcCCC----------CH---HHHHhcCccccChhhhccCCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEc
Q psy6348 123 --KVIGFDPMV----------SV---EDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNV 187 (333)
Q Consensus 123 --~V~~~d~~~----------~~---~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~ 187 (333)
+++.+|+.- .. ..++.. ...+|.|+++.+|+++=.- +.+.+.++.++.|.+..++.=.
T Consensus 219 ~~~i~~~D~~G~i~~~r~~~l~~~~~~~a~~~--~~~~l~e~~~~~~v~iG~s-----~~g~~~~~~v~~M~~~piifal 291 (763)
T PRK12862 219 RENIWVTDIKGVVYEGRTELMDPWKARYAQKT--DARTLAEVIEGADVFLGLS-----AAGVLKPEMVKKMAPRPLIFAL 291 (763)
T ss_pred cccEEEEcCCCeeeCCCCccccHHHHHHhhhc--ccCCHHHHHcCCCEEEEcC-----CCCCCCHHHHHHhccCCEEEeC
Confidence 788888431 11 112221 2348999999999887542 2589999999999999999999
Q ss_pred cCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCccchhhcCCCcEEEccCCC
Q psy6348 188 ARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLG 241 (333)
Q Consensus 188 aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~L~~~pnvi~TPHi~ 241 (333)
|....--..+.+..-..|.|.+-+- ...| . +.-|+++-|-++
T Consensus 292 sNP~~E~~p~~a~~~~~~~i~atGr---s~~p--~-------Q~NN~~~FPgi~ 333 (763)
T PRK12862 292 ANPTPEILPEEARAVRPDAIIATGR---SDYP--N-------QVNNVLCFPYIF 333 (763)
T ss_pred CCCcccCCHHHHHHhcCCEEEEECC---cCCC--C-------cccceeeccchh
Confidence 9877532222222222234543331 1112 1 466899999885
No 280
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=96.68 E-value=0.028 Score=56.46 Aligned_cols=132 Identities=16% Similarity=0.168 Sum_probs=81.0
Q ss_pred hhHhhCCcEEEECC-CCCchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCCCEEEEEec---ChHHHHHH
Q psy6348 39 TAATRKGVLVLNAP-GGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGL---GRIGREVA 114 (333)
Q Consensus 39 ~aa~~~gI~V~n~p-~~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIGl---G~IG~~vA 114 (333)
+.+...+|+|+|.- |....++-. ++=++.+.+++ |. .|..+.|+||++||- +++..+++
T Consensus 198 e~A~~s~vPVINAgdg~~~HPtQa--LaDl~Ti~E~~---------g~------~g~~l~G~kIa~vGD~~~~rv~~Sl~ 260 (429)
T PRK11891 198 EFARATNLPVINGGDGPGEHPSQA--LLDLYTIQREF---------SR------LGKIVDGAHIALVGDLKYGRTVHSLV 260 (429)
T ss_pred HHHHhCCCCEEECCCCCCCCcHHH--HHHHHHHHHHh---------Cc------cCCCcCCCEEEEECcCCCChHHHHHH
Confidence 34566789999987 445555432 22233332211 11 122478999999999 48999999
Q ss_pred HHHhhC-CCEEEEEcCCC---CHH---HHHhcCc--cc-cChhhhccCCCEEEEecCCchh-----h-----HhhccHHH
Q psy6348 115 LRMQAF-GMKVIGFDPMV---SVE---DAAKLNI--AS-LGLEDIWPLADYITVHTPLIPQ-----T-----KNLINAEV 174 (333)
Q Consensus 115 ~~l~~~-G~~V~~~d~~~---~~~---~a~~~gv--~~-~~l~ell~~aDvV~l~~P~t~~-----t-----~~li~~~~ 174 (333)
..+..+ |++|....|.. ..+ .+++.|. +. .++++.+++||+|....-..+. . .-.++++.
T Consensus 261 ~~la~~~G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~eav~~ADVVYt~~~q~er~~~~~~~~~~~~y~vt~el 340 (429)
T PRK11891 261 KLLALYRGLKFTLVSPPTLEMPAYIVEQISRNGHVIEQTDDLAAGLRGADVVYATRIQKERFADESFEGYTPDFQINQAL 340 (429)
T ss_pred HHHHHhcCCEEEEECCCccccCHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEEcCchhhcccCHHHHHhccCCcCCHHH
Confidence 988876 99999988754 122 2233353 33 3789999999999984421000 0 01235555
Q ss_pred Hhc-cCCCcEEEEc
Q psy6348 175 LKK-CKKGVRVVNV 187 (333)
Q Consensus 175 ~~~-mk~gailIN~ 187 (333)
++. .|+++++..|
T Consensus 341 l~~~ak~dai~MHc 354 (429)
T PRK11891 341 VDAVCKPDTLIMHP 354 (429)
T ss_pred HhCccCCCcEEECC
Confidence 665 6666666665
No 281
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=96.68 E-value=0.022 Score=55.51 Aligned_cols=128 Identities=20% Similarity=0.183 Sum_probs=82.4
Q ss_pred hhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCCCEEEEEecC--hHHHHHHHH
Q psy6348 39 TAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLG--RIGREVALR 116 (333)
Q Consensus 39 ~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIGlG--~IG~~vA~~ 116 (333)
+.+...+|+|+|+-+....++- +++=++.+.++ + | .+.|+||++||-+ ++..+++..
T Consensus 117 ~~a~~~~vPVINa~~~~~HPtQ--aLaDl~Ti~e~-----------------~-g-~l~g~~va~vGd~~~~v~~Sl~~~ 175 (331)
T PRK02102 117 ELAKYSGVPVWNGLTDEWHPTQ--MLADFMTMKEH-----------------F-G-PLKGLKLAYVGDGRNNMANSLMVG 175 (331)
T ss_pred HHHHhCCCCEEECCCCCCChHH--HHHHHHHHHHH-----------------h-C-CCCCCEEEEECCCcccHHHHHHHH
Confidence 4456678999999765555543 23333333221 1 1 3789999999997 788999999
Q ss_pred HhhCCCEEEEEcCCC---CHH-------HHHhcCcc--c-cChhhhccCCCEEEEecCC---c----hhh-----Hhhcc
Q psy6348 117 MQAFGMKVIGFDPMV---SVE-------DAAKLNIA--S-LGLEDIWPLADYITVHTPL---I----PQT-----KNLIN 171 (333)
Q Consensus 117 l~~~G~~V~~~d~~~---~~~-------~a~~~gv~--~-~~l~ell~~aDvV~l~~P~---t----~~t-----~~li~ 171 (333)
+..+|++|....|.. ..+ .++..|.. . .++++++++||+|..-+=. . ++- .-.++
T Consensus 176 ~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~~w~~~~~~~~~~~~~~~~~~y~vt 255 (331)
T PRK02102 176 GAKLGMDVRICAPKELWPEEELVALAREIAKETGAKITITEDPEEAVKGADVIYTDVWVSMGEEDEWEERIKLLKPYQVN 255 (331)
T ss_pred HHHcCCEEEEECCcccccCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcCcccCccccchHHHHHhccCCcCC
Confidence 999999999987754 111 12334543 2 3789999999999985310 0 010 11245
Q ss_pred HHHHh-ccCCCcEEEEc
Q psy6348 172 AEVLK-KCKKGVRVVNV 187 (333)
Q Consensus 172 ~~~~~-~mk~gailIN~ 187 (333)
++.++ .+|+++++..|
T Consensus 256 ~ell~~~~~~d~ivmH~ 272 (331)
T PRK02102 256 MDLMKATGNPDVIFMHC 272 (331)
T ss_pred HHHHhhhcCCCCEEECC
Confidence 66666 46777777777
No 282
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=96.65 E-value=0.033 Score=54.33 Aligned_cols=131 Identities=17% Similarity=0.167 Sum_probs=84.7
Q ss_pred hhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCCCEEEEEecC--hHHHHHHHH
Q psy6348 39 TAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLG--RIGREVALR 116 (333)
Q Consensus 39 ~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIGlG--~IG~~vA~~ 116 (333)
+.|..-+|+|+|.-+....++- +++=++.+.++ +.|..+.|++|++||=+ ++..+++..
T Consensus 116 ~~a~~~~vPVINa~~~~~HPtQ--aLaDl~Ti~e~-----------------~g~~~l~gl~va~vGD~~~~v~~S~~~~ 176 (334)
T PRK12562 116 TLAEYAGVPVWNGLTNEFHPTQ--LLADLLTMQEH-----------------LPGKAFNEMTLVYAGDARNNMGNSMLEA 176 (334)
T ss_pred HHHHhCCCCEEECCCCCCChHH--HHHHHHHHHHH-----------------hCCCCcCCcEEEEECCCCCCHHHHHHHH
Confidence 4456678999999765555543 33333333221 11234789999999976 789999999
Q ss_pred HhhCCCEEEEEcCCC---CHH---H----HHhcCcc--c-cChhhhccCCCEEEEec------CCc--hh-----hHhhc
Q psy6348 117 MQAFGMKVIGFDPMV---SVE---D----AAKLNIA--S-LGLEDIWPLADYITVHT------PLI--PQ-----TKNLI 170 (333)
Q Consensus 117 l~~~G~~V~~~d~~~---~~~---~----a~~~gv~--~-~~l~ell~~aDvV~l~~------P~t--~~-----t~~li 170 (333)
+..+|++|....|.. ..+ . ++..|.. . .++++.++++|+|..-. ... ++ -.-.+
T Consensus 177 ~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~~w~sm~~~~~~~~~~~~~~~~y~v 256 (334)
T PRK12562 177 AALTGLDLRLVAPQACWPEASLVAECSALAQKHGGKITLTEDIAAGVKGADFIYTDVWVSMGEPKEKWAERIALLRGYQV 256 (334)
T ss_pred HHHcCCEEEEECCcccCCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcCccccccchhhHHHHHHhccCCcC
Confidence 999999999888753 111 1 1233532 2 37999999999998853 100 01 01124
Q ss_pred cHHHHhcc-CCCcEEEEcc
Q psy6348 171 NAEVLKKC-KKGVRVVNVA 188 (333)
Q Consensus 171 ~~~~~~~m-k~gailIN~a 188 (333)
+++.++.. |+++++..|.
T Consensus 257 ~~ell~~a~~~~~i~mHcL 275 (334)
T PRK12562 257 NSKMMALTGNPQVKFLHCL 275 (334)
T ss_pred CHHHHHhhcCCCCEEECCC
Confidence 66777774 7888888884
No 283
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=96.64 E-value=0.013 Score=54.60 Aligned_cols=87 Identities=15% Similarity=0.215 Sum_probs=61.0
Q ss_pred CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhccHHHHhcc
Q psy6348 99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKC 178 (333)
Q Consensus 99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~m 178 (333)
.++-|+|.|.+++.+++.++.+|++|+++|++.... ....+..++.+....| .+.+..+
T Consensus 101 ~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~~~-----------~~~~~~~~~~~~~~~~----------~~~~~~~ 159 (246)
T TIGR02964 101 PHVVLFGAGHVGRALVRALAPLPCRVTWVDSREAEF-----------PEDLPDGVATLVTDEP----------EAEVAEA 159 (246)
T ss_pred CEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcccc-----------cccCCCCceEEecCCH----------HHHHhcC
Confidence 589999999999999999999999999999864211 0111233443332222 2223335
Q ss_pred CCCcEEEEccCCcccchHhHHhhhhcCC
Q psy6348 179 KKGVRVVNVARGGIVDENALLDSLKCGH 206 (333)
Q Consensus 179 k~gailIN~aRg~~vd~~aL~~aL~~g~ 206 (333)
.++..+|=+.++.-.|.+.|..+|++..
T Consensus 160 ~~~t~vvi~th~h~~D~~~L~~aL~~~~ 187 (246)
T TIGR02964 160 PPGSYFLVLTHDHALDLELCHAALRRGD 187 (246)
T ss_pred CCCcEEEEEeCChHHHHHHHHHHHhCCC
Confidence 6778888888999999999999995433
No 284
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=96.63 E-value=0.0044 Score=58.86 Aligned_cols=69 Identities=17% Similarity=0.127 Sum_probs=49.7
Q ss_pred ccCCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCCCH--HHHHhcCc----ccc----ChhhhccCCCEEEEecCCc
Q psy6348 95 ELYGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMVSV--EDAAKLNI----ASL----GLEDIWPLADYITVHTPLI 163 (333)
Q Consensus 95 ~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~--~~a~~~gv----~~~----~l~ell~~aDvV~l~~P~t 163 (333)
.+.|+++.|||.|.+|++++..|...|+ +|++++|+... +.+.+.+. ... ++.+.+.++|+|+.++|..
T Consensus 122 ~~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~g 201 (282)
T TIGR01809 122 PLAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPAD 201 (282)
T ss_pred ccCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCCC
Confidence 4679999999999999999999999998 69999996532 12222221 111 2235567889999998853
No 285
>PLN02527 aspartate carbamoyltransferase
Probab=96.62 E-value=0.035 Score=53.44 Aligned_cols=128 Identities=17% Similarity=0.160 Sum_probs=80.5
Q ss_pred hhHhhCCcEEEECCC-CCchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCCCEEEEEecC---hHHHHHH
Q psy6348 39 TAATRKGVLVLNAPG-GNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLG---RIGREVA 114 (333)
Q Consensus 39 ~aa~~~gI~V~n~p~-~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIGlG---~IG~~vA 114 (333)
+.+..-.|+|+|.-. ....++- +++=++.+.++ .| ++.|+||++||-+ ++..+++
T Consensus 112 ~~a~~~~vPVINa~~g~~~HPtQ--~LaDl~Ti~e~------------------~g-~l~g~kva~vGD~~~~rv~~Sl~ 170 (306)
T PLN02527 112 RAAATAEIPVINAGDGPGQHPTQ--ALLDVYTIQRE------------------IG-RLDGIKVGLVGDLANGRTVRSLA 170 (306)
T ss_pred HHHHhCCCCEEECCCCCCCChHH--HHHHHHHHHHH------------------hC-CcCCCEEEEECCCCCChhHHHHH
Confidence 445567899999854 3445543 22223333221 12 3789999999965 7899999
Q ss_pred HHHhhC-CCEEEEEcCCC---CHH---HHHhcCccc---cChhhhccCCCEEEEecCCch------h-h-----HhhccH
Q psy6348 115 LRMQAF-GMKVIGFDPMV---SVE---DAAKLNIAS---LGLEDIWPLADYITVHTPLIP------Q-T-----KNLINA 172 (333)
Q Consensus 115 ~~l~~~-G~~V~~~d~~~---~~~---~a~~~gv~~---~~l~ell~~aDvV~l~~P~t~------~-t-----~~li~~ 172 (333)
..+..+ |++|....|.. ..+ .+++.|..+ .++++.+++||+|....--.+ . - .-.+++
T Consensus 171 ~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~~~q~e~~~~~~~~~~~~~~~y~v~~ 250 (306)
T PLN02527 171 YLLAKYEDVKIYFVAPDVVKMKDDIKDYLTSKGVEWEESSDLMEVASKCDVLYQTRIQRERFGERIDLYEAARGKYIVDK 250 (306)
T ss_pred HHHHhcCCCEEEEECCCccCCCHHHHHHHHHcCCEEEEEcCHHHHhCCCCEEEECCcchhhhcchHHHHHHhCCCceECH
Confidence 988887 99999887743 221 233345432 379999999999998431100 0 1 123455
Q ss_pred HHHhccCCCcEEEEc
Q psy6348 173 EVLKKCKKGVRVVNV 187 (333)
Q Consensus 173 ~~~~~mk~gailIN~ 187 (333)
+.++..|+++++..|
T Consensus 251 ~ll~~a~~~~ivmHc 265 (306)
T PLN02527 251 KVMDVLPKHAVVMHP 265 (306)
T ss_pred HHHhccCCCCEEECC
Confidence 666667777777766
No 286
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=96.62 E-value=0.0064 Score=59.35 Aligned_cols=64 Identities=30% Similarity=0.358 Sum_probs=43.6
Q ss_pred CEEEEEecChHHHHHHHHHhh-CCCEEEEE-cCCCCHH--HHHhcC------------------cccc-ChhhhccCCCE
Q psy6348 99 KTLAVLGLGRIGREVALRMQA-FGMKVIGF-DPMVSVE--DAAKLN------------------IASL-GLEDIWPLADY 155 (333)
Q Consensus 99 ktvGIIGlG~IG~~vA~~l~~-~G~~V~~~-d~~~~~~--~a~~~g------------------v~~~-~l~ell~~aDv 155 (333)
.+|||+|+|+||+.+++.+.. -++++.+. |+..... .++..| +... ++++++.++|+
T Consensus 2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~vDV 81 (341)
T PRK04207 2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEKADI 81 (341)
T ss_pred eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhccCCE
Confidence 379999999999999988764 47888775 4332111 122122 2222 56788889999
Q ss_pred EEEecCC
Q psy6348 156 ITVHTPL 162 (333)
Q Consensus 156 V~l~~P~ 162 (333)
|+.|+|.
T Consensus 82 VIdaT~~ 88 (341)
T PRK04207 82 VVDATPG 88 (341)
T ss_pred EEECCCc
Confidence 9999884
No 287
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.61 E-value=0.0053 Score=62.67 Aligned_cols=64 Identities=19% Similarity=0.174 Sum_probs=48.1
Q ss_pred cCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH---HHHHhc--Ccccc--C-hhhhccCCCEEEEe
Q psy6348 96 LYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV---EDAAKL--NIASL--G-LEDIWPLADYITVH 159 (333)
Q Consensus 96 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~---~~a~~~--gv~~~--~-l~ell~~aDvV~l~ 159 (333)
+.++++.|+|+|..|.++|+.|++.|++|.++|..... +..++. |++.. + ..+.+.++|+|+..
T Consensus 5 ~~~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~d~vv~s 76 (498)
T PRK02006 5 LQGPMVLVLGLGESGLAMARWCARHGARLRVADTREAPPNLAALRAELPDAEFVGGPFDPALLDGVDLVALS 76 (498)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCCcEEEeCCCchhHhcCCCEEEEC
Confidence 56899999999999999999999999999999976522 223333 44332 1 23456789999986
No 288
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.59 E-value=0.0066 Score=60.78 Aligned_cols=110 Identities=18% Similarity=0.178 Sum_probs=69.5
Q ss_pred ccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-----HHHHhcCcccc---ChhhhccC-CCEEEEec--C-C
Q psy6348 95 ELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-----EDAAKLNIASL---GLEDIWPL-ADYITVHT--P-L 162 (333)
Q Consensus 95 ~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-----~~a~~~gv~~~---~l~ell~~-aDvV~l~~--P-~ 162 (333)
++.||++.|+|.|.+|.++|+.|++.|++|+++|..... +...+.|+... ...+++.+ .|+|+..- | .
T Consensus 2 ~~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vV~s~gi~~~ 81 (447)
T PRK02472 2 EYQNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHPLELLDEDFDLMVKNPGIPYT 81 (447)
T ss_pred CcCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCCHHHhcCcCCEEEECCCCCCC
Confidence 467999999999999999999999999999999975421 22344466542 23344444 89887754 2 2
Q ss_pred chhh-------HhhccHHHH-hcc-CCCcEEEEccCCcccchHhHHhhhhc
Q psy6348 163 IPQT-------KNLINAEVL-KKC-KKGVRVVNVARGGIVDENALLDSLKC 204 (333)
Q Consensus 163 t~~t-------~~li~~~~~-~~m-k~gailIN~aRg~~vd~~aL~~aL~~ 204 (333)
.+.. ..++.+.++ ..+ +...+-|--+.|+--...-+...|+.
T Consensus 82 ~~~~~~a~~~~i~v~~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~ 132 (447)
T PRK02472 82 NPMVEKALEKGIPIITEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKA 132 (447)
T ss_pred CHHHHHHHHCCCcEEeHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHH
Confidence 2211 112333333 233 33345555567877777777777764
No 289
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=96.58 E-value=0.0061 Score=61.58 Aligned_cols=110 Identities=19% Similarity=0.175 Sum_probs=71.8
Q ss_pred cCCCEEEEEecChHHHH-HHHHHhhCCCEEEEEcCCCCH--HHHHhcCcccc--ChhhhccCCCEEEEec--CC-chhhH
Q psy6348 96 LYGKTLAVLGLGRIGRE-VALRMQAFGMKVIGFDPMVSV--EDAAKLNIASL--GLEDIWPLADYITVHT--PL-IPQTK 167 (333)
Q Consensus 96 l~gktvGIIGlG~IG~~-vA~~l~~~G~~V~~~d~~~~~--~~a~~~gv~~~--~l~ell~~aDvV~l~~--P~-t~~t~ 167 (333)
.+++++.|+|+|..|.+ +|+.|+..|++|.++|..... +..++.|+... .-.+.+.++|+|+..- |. ++..+
T Consensus 5 ~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~spgi~~~~~~~~ 84 (461)
T PRK00421 5 RRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSSAIPDDNPELV 84 (461)
T ss_pred CCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHH
Confidence 46789999999999999 799999999999999986532 22344576543 2234567899888753 32 22222
Q ss_pred -------hhccHHHH-hc-cCC-CcEEEEccCCcccchHhHHhhhhcC
Q psy6348 168 -------NLINAEVL-KK-CKK-GVRVVNVARGGIVDENALLDSLKCG 205 (333)
Q Consensus 168 -------~li~~~~~-~~-mk~-gailIN~aRg~~vd~~aL~~aL~~g 205 (333)
.++++.++ .. +++ ..+-|--+.|+--...-+...|+..
T Consensus 85 ~a~~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~ 132 (461)
T PRK00421 85 AARELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEA 132 (461)
T ss_pred HHHHCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhc
Confidence 23444333 33 332 3455555668877777777777654
No 290
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.58 E-value=0.0052 Score=59.04 Aligned_cols=64 Identities=19% Similarity=0.167 Sum_probs=45.9
Q ss_pred CEEEEEecChHHHHHHHHHhhCC--CEEEEEcCCCCHHH--HHhcC-cc--------ccChhhhccCCCEEEEecCC
Q psy6348 99 KTLAVLGLGRIGREVALRMQAFG--MKVIGFDPMVSVED--AAKLN-IA--------SLGLEDIWPLADYITVHTPL 162 (333)
Q Consensus 99 ktvGIIGlG~IG~~vA~~l~~~G--~~V~~~d~~~~~~~--a~~~g-v~--------~~~l~ell~~aDvV~l~~P~ 162 (333)
++|+|||.|.+|..+|..+...| .+|..||+...... +.++. .. ...-.+.+++||+|+++++.
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~~~l~~aDiViita~~ 77 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDYADCKGADVVVITAGA 77 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCHHHhCCCCEEEEccCC
Confidence 37999999999999999998888 58999998753222 11111 10 01223568999999999985
No 291
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.58 E-value=0.013 Score=56.47 Aligned_cols=113 Identities=15% Similarity=0.184 Sum_probs=67.2
Q ss_pred CEEEEEecChHHHHHHHHHhhCCC--EEEEEcCCCCHHHHHhc---------C---ccc-cChhhhccCCCEEEEecCC-
Q psy6348 99 KTLAVLGLGRIGREVALRMQAFGM--KVIGFDPMVSVEDAAKL---------N---IAS-LGLEDIWPLADYITVHTPL- 162 (333)
Q Consensus 99 ktvGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~~~~~a~~~---------g---v~~-~~l~ell~~aDvV~l~~P~- 162 (333)
.||+|||.|.||..+|..+...|. ++..||..........+ . +.. .+.+ .+++||+|+++.-.
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~-~~~~adivvitaG~~ 82 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYS-VTANSKVVIVTAGAR 82 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHH-HhCCCCEEEECCCCC
Confidence 589999999999999988876554 79999986643222111 1 111 1344 48999999996432
Q ss_pred -ch-hhHh-hc--cH-------HHHhccCCCcEEEEccCCcccchHhHHhh--hhcCCceEEEe
Q psy6348 163 -IP-QTKN-LI--NA-------EVLKKCKKGVRVVNVARGGIVDENALLDS--LKCGHCGGAAL 212 (333)
Q Consensus 163 -t~-~t~~-li--~~-------~~~~~mk~gailIN~aRg~~vd~~aL~~a--L~~g~i~gaal 212 (333)
.+ .++- ++ +. +.+....+++++|+++-..=+-...+.+. +...++.|.+.
T Consensus 83 ~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~~t~~~~k~sg~p~~~viG~gt 146 (312)
T cd05293 83 QNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPVDIMTYVAWKLSGLPKHRVIGSGC 146 (312)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccChHHHHHHHHHHHhCCCHHHEEecCc
Confidence 11 2331 11 11 23344567899999984332333333333 44556666643
No 292
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=96.58 E-value=0.0079 Score=58.70 Aligned_cols=90 Identities=21% Similarity=0.170 Sum_probs=62.5
Q ss_pred cccCCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC---------------------CHH-----HHHhc--Cccc-
Q psy6348 94 TELYGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV---------------------SVE-----DAAKL--NIAS- 143 (333)
Q Consensus 94 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~---------------------~~~-----~a~~~--gv~~- 143 (333)
..|.+++|.|||+|.+|..+|+.|...|. ++..+|+.. ++. ..++. +++.
T Consensus 20 ~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~ 99 (338)
T PRK12475 20 RKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIV 99 (338)
T ss_pred HhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEE
Confidence 46899999999999999999999999998 788888753 011 11111 1211
Q ss_pred --------cChhhhccCCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEc
Q psy6348 144 --------LGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNV 187 (333)
Q Consensus 144 --------~~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~ 187 (333)
.+++++++++|+|+.++ .+.+++-+++.-..+ .+.-+|..
T Consensus 100 ~~~~~~~~~~~~~~~~~~DlVid~~-D~~~~r~~in~~~~~---~~ip~i~~ 147 (338)
T PRK12475 100 PVVTDVTVEELEELVKEVDLIIDAT-DNFDTRLLINDLSQK---YNIPWIYG 147 (338)
T ss_pred EEeccCCHHHHHHHhcCCCEEEEcC-CCHHHHHHHHHHHHH---cCCCEEEE
Confidence 13577889999999988 567788777665543 33345544
No 293
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=96.56 E-value=0.0085 Score=59.19 Aligned_cols=87 Identities=30% Similarity=0.395 Sum_probs=60.3
Q ss_pred cCCCEEEEEecCh----------HHHHHHHHHhhCCCEEEEEcCCCCHHHHHhc-Ccccc-ChhhhccCCCEEEEecCCc
Q psy6348 96 LYGKTLAVLGLGR----------IGREVALRMQAFGMKVIGFDPMVSVEDAAKL-NIASL-GLEDIWPLADYITVHTPLI 163 (333)
Q Consensus 96 l~gktvGIIGlG~----------IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~-gv~~~-~l~ell~~aDvV~l~~P~t 163 (333)
|.|||+||.|+-- --..++++|+..|.+|.+|||.........+ ++.+. +++++++.||++++++. .
T Consensus 308 l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga~V~aYDP~a~~~~~~~~~~~~~~~~~~~~~~~aDaivi~te-w 386 (414)
T COG1004 308 LKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEVIAYDPVAMENAFRNFPDVELESDAEEALKGADAIVINTE-W 386 (414)
T ss_pred CCCcEEEEEEEeecCCCccchhchHHHHHHHHHHCCCEEEEECchhhHHHHhcCCCceEeCCHHHHHhhCCEEEEecc-H
Confidence 8899999999842 4567899999999999999997644333322 25554 79999999999999875 2
Q ss_pred hhhHhhccHHHHhccCCCcEEEE
Q psy6348 164 PQTKNLINAEVLKKCKKGVRVVN 186 (333)
Q Consensus 164 ~~t~~li~~~~~~~mk~gailIN 186 (333)
++-+.+ +-+.+ .||. ..+++
T Consensus 387 ~ef~~~-d~~~~-~m~~-~~v~D 406 (414)
T COG1004 387 DEFRDL-DFEKL-LMKT-PVVID 406 (414)
T ss_pred HHHhcc-Chhhh-hccC-CEEEe
Confidence 333333 22222 4553 45554
No 294
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=96.56 E-value=0.013 Score=56.13 Aligned_cols=105 Identities=18% Similarity=0.129 Sum_probs=72.6
Q ss_pred CCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCcccc-ChhhhccCCCEEEEecCCchhhH---hh---
Q psy6348 97 YGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASL-GLEDIWPLADYITVHTPLIPQTK---NL--- 169 (333)
Q Consensus 97 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~-~l~ell~~aDvV~l~~P~t~~t~---~l--- 169 (333)
.|++++|||--.=-..++++|.+.|++|+.+.-. .+.....|++.. +.+++++++|+|++-+|.+.+.. ..
T Consensus 1 ~~~~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~--~~~~~~~g~~~~~~~~~~~~~ad~ii~~~p~~~~~~~i~~~~~~ 78 (296)
T PRK08306 1 TGKHIAVIGGDARQLELIRKLVELGAKVSLVGFD--QLDHGFTGATKSSSLEEALSDVDVIILPVPGTNDEGNVDTVFSN 78 (296)
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHCCCEEEEEecc--ccccccCCceeeccHHHHhccCCEEEECCccccCCceeeccccc
Confidence 3789999998888888999999999999875421 111223477666 56888999999999988654321 11
Q ss_pred ----ccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCce
Q psy6348 170 ----INAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCG 208 (333)
Q Consensus 170 ----i~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~ 208 (333)
++.+.++.|++|..++ ++.+..- +-+.+++.++.
T Consensus 79 ~~~~~~~~~l~~l~~~~~v~-~G~~~~~----~~~~~~~~gi~ 116 (296)
T PRK08306 79 EKLVLTEELLELTPEHCTIF-SGIANPY----LKELAKETNRK 116 (296)
T ss_pred cCCcchHHHHHhcCCCCEEE-EecCCHH----HHHHHHHCCCe
Confidence 3577899999998544 3443322 33455566665
No 295
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=96.56 E-value=0.0087 Score=62.75 Aligned_cols=91 Identities=19% Similarity=0.256 Sum_probs=63.8
Q ss_pred CCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCC-HHHHHhcCcccc-----C---hhhh-ccCCCEEEEecCCchhhH
Q psy6348 98 GKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVS-VEDAAKLNIASL-----G---LEDI-WPLADYITVHTPLIPQTK 167 (333)
Q Consensus 98 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~gv~~~-----~---l~el-l~~aDvV~l~~P~t~~t~ 167 (333)
..++-|+|+|++|+.+++.|...|.++++.|.++. .+.+++.|.... + ++++ +++||.++++++..+.+.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n~ 479 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDTM 479 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHHH
Confidence 45799999999999999999999999999998763 345566665432 2 2222 678999999999765554
Q ss_pred hhccHHHHhccCCCcEEEEccCC
Q psy6348 168 NLINAEVLKKCKKGVRVVNVARG 190 (333)
Q Consensus 168 ~li~~~~~~~mk~gailIN~aRg 190 (333)
.++ .....+.|...++--+|.
T Consensus 480 ~i~--~~~r~~~p~~~IiaRa~~ 500 (601)
T PRK03659 480 KIV--ELCQQHFPHLHILARARG 500 (601)
T ss_pred HHH--HHHHHHCCCCeEEEEeCC
Confidence 443 233445566666654443
No 296
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=96.56 E-value=0.0062 Score=58.82 Aligned_cols=93 Identities=12% Similarity=0.161 Sum_probs=59.0
Q ss_pred CCCEEEEEecChHHHHHHHHHhhCCC--EEEEEcCCCCHHHHHhcCc----------cc-cChhhhccCCCEEEEecCC-
Q psy6348 97 YGKTLAVLGLGRIGREVALRMQAFGM--KVIGFDPMVSVEDAAKLNI----------AS-LGLEDIWPLADYITVHTPL- 162 (333)
Q Consensus 97 ~gktvGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~~~~~a~~~gv----------~~-~~l~ell~~aDvV~l~~P~- 162 (333)
.++||+|||.|.+|..+|..+...|. ++..||..........+.. .. .+-.+.+++||+|+++.-.
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adivIitag~~ 84 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLVVITAGAP 84 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEEEEecCCC
Confidence 46799999999999999999988887 8999998654322222111 11 1223568999999997542
Q ss_pred -ch-hhH--------hhcc--HHHHhccCCCcEEEEccC
Q psy6348 163 -IP-QTK--------NLIN--AEVLKKCKKGVRVVNVAR 189 (333)
Q Consensus 163 -t~-~t~--------~li~--~~~~~~mk~gailIN~aR 189 (333)
.+ .++ .++. .+.+....+++++|+++-
T Consensus 85 ~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsN 123 (315)
T PRK00066 85 QKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASN 123 (315)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence 11 122 1111 112222346889999974
No 297
>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=96.55 E-value=0.014 Score=56.20 Aligned_cols=93 Identities=13% Similarity=0.152 Sum_probs=63.0
Q ss_pred CcEEEEC-CCCCchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCCCEEEEEec---ChHHHHHHHHHhhC
Q psy6348 45 GVLVLNA-PGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGL---GRIGREVALRMQAF 120 (333)
Q Consensus 45 gI~V~n~-p~~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIGl---G~IG~~vA~~l~~~ 120 (333)
.|+|+|. -|....++-. ++=++.+..+ .| .+.|++|++||= +++..+++..+..+
T Consensus 124 ~vPvINag~g~~~HPtQa--LaDl~Ti~e~------------------~g-~l~g~~va~vGD~~~~rv~~Sl~~~~a~~ 182 (310)
T PRK13814 124 SGVVINAGDGNHQHPSQA--LIDLMTIKQH------------------KP-HWNKLCVTIIGDIRHSRVANSLMDGLVTM 182 (310)
T ss_pred CCCeEECCcCCCCCchHH--HHHHHHHHHH------------------hC-CcCCcEEEEECCCCCCcHHHHHHHHHHHc
Confidence 6999998 4555555542 3333333221 12 267999999998 59999999999999
Q ss_pred CC-EEEEEcCCCC-HHHHHhcCccc-cChhhhccCCCEEEE
Q psy6348 121 GM-KVIGFDPMVS-VEDAAKLNIAS-LGLEDIWPLADYITV 158 (333)
Q Consensus 121 G~-~V~~~d~~~~-~~~a~~~gv~~-~~l~ell~~aDvV~l 158 (333)
|+ +|....|..- +.......++. .++++.++++|+|..
T Consensus 183 g~~~v~~~~P~~~~p~~~~~~~~~~~~d~~ea~~~aDvvy~ 223 (310)
T PRK13814 183 GVPEIRLVGPSSLLPDKVGNDSIKKFTELKPSLLNSDVIVT 223 (310)
T ss_pred CCCEEEEeCCcccCcCccccceEEEEcCHHHHhCCCCEEEE
Confidence 99 9999887541 11111112333 378999999999987
No 298
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.55 E-value=0.006 Score=61.98 Aligned_cols=112 Identities=16% Similarity=0.122 Sum_probs=70.8
Q ss_pred cccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHH--HHHhcCcccc---ChhhhccCCCEEEEe--cC-Cchh
Q psy6348 94 TELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVE--DAAKLNIASL---GLEDIWPLADYITVH--TP-LIPQ 165 (333)
Q Consensus 94 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~--~a~~~gv~~~---~l~ell~~aDvV~l~--~P-~t~~ 165 (333)
.++.++++.|+|+|..|.++|+.|...|++|.++|+..... ...+.|++.. ...+.+.++|+|+.. +| .++.
T Consensus 11 ~~~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~Spgi~~~~p~ 90 (473)
T PRK00141 11 PQELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVTGVADISTAEASDQLDSFSLVVTSPGWRPDSPL 90 (473)
T ss_pred ccccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEeCCCchhHhcCCCEEEeCCCCCCCCHH
Confidence 35788999999999999999999999999999999765322 1244577653 223456789988876 23 2232
Q ss_pred hH-------hhccHHHHhc-------c-CC-CcEEEEccCCcccchHhHHhhhhcC
Q psy6348 166 TK-------NLINAEVLKK-------C-KK-GVRVVNVARGGIVDENALLDSLKCG 205 (333)
Q Consensus 166 t~-------~li~~~~~~~-------m-k~-gailIN~aRg~~vd~~aL~~aL~~g 205 (333)
.. .++++-.+.. + ++ ..+-|--+-|+--...-|...|+..
T Consensus 91 ~~~a~~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~ 146 (473)
T PRK00141 91 LVDAQSQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEG 146 (473)
T ss_pred HHHHHHCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhc
Confidence 21 1123333321 1 12 2344444567777777777777653
No 299
>PRK07589 ornithine cyclodeaminase; Validated
Probab=96.54 E-value=0.0086 Score=58.64 Aligned_cols=88 Identities=20% Similarity=0.255 Sum_probs=60.9
Q ss_pred CCEEEEEecChHHHHHHHHHhh-CCC-EEEEEcCCCCH--HHH---HhcCcc--c-cChhhhccCCCEEEEecCCchhhH
Q psy6348 98 GKTLAVLGLGRIGREVALRMQA-FGM-KVIGFDPMVSV--EDA---AKLNIA--S-LGLEDIWPLADYITVHTPLIPQTK 167 (333)
Q Consensus 98 gktvGIIGlG~IG~~vA~~l~~-~G~-~V~~~d~~~~~--~~a---~~~gv~--~-~~l~ell~~aDvV~l~~P~t~~t~ 167 (333)
-++++|||.|..+...++.+.. +.. +|.+|+++... +.+ ++.++. . .++++++++||+|+.++|.+ +..
T Consensus 129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~S~-~~~ 207 (346)
T PRK07589 129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTADK-TNA 207 (346)
T ss_pred CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCC-CCC
Confidence 4689999999999888765543 344 79999997633 111 222432 2 37999999999999999732 222
Q ss_pred hhccHHHHhccCCCcEEEEccC
Q psy6348 168 NLINAEVLKKCKKGVRVVNVAR 189 (333)
Q Consensus 168 ~li~~~~~~~mk~gailIN~aR 189 (333)
-++..+ .+|+|+.+.-++.
T Consensus 208 Pvl~~~---~lkpG~hV~aIGs 226 (346)
T PRK07589 208 TILTDD---MVEPGMHINAVGG 226 (346)
T ss_pred ceecHH---HcCCCcEEEecCC
Confidence 456554 4699998887664
No 300
>PRK12861 malic enzyme; Reviewed
Probab=96.52 E-value=0.078 Score=56.90 Aligned_cols=178 Identities=12% Similarity=0.039 Sum_probs=118.9
Q ss_pred cceEEEcccCcCccChh---------hHhh-CCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCC
Q psy6348 23 LQVVGRAGTGVDNIDLT---------AATR-KGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYT 92 (333)
Q Consensus 23 Lk~I~~~g~G~d~iD~~---------aa~~-~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~ 92 (333)
++.|.....|++.=|+. ..++ ..|+|+|+. -..+|=.+++-+++.+|- .
T Consensus 125 v~a~~~~fg~i~lED~~~p~~f~il~~~~~~~~ipvf~DD---~qGTa~v~lA~llnal~~------------------~ 183 (764)
T PRK12861 125 IAGLEPTFGGINLEDIKAPECFTVERKLRERMKIPVFHDD---QHGTAITVSAAFINGLKV------------------V 183 (764)
T ss_pred HHHHHhhcCCceeeeccCchHHHHHHHHHhcCCCCeeccc---cchHHHHHHHHHHHHHHH------------------h
Confidence 45555555555544432 1223 279999984 345666788888888772 4
Q ss_pred ccccCCCEEEEEecChHHHHHHHHHhhCCC---EEEEEcCCC----------CH---HHHHhcCccccChhhhccCCCEE
Q psy6348 93 GTELYGKTLAVLGLGRIGREVALRMQAFGM---KVIGFDPMV----------SV---EDAAKLNIASLGLEDIWPLADYI 156 (333)
Q Consensus 93 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~---~V~~~d~~~----------~~---~~a~~~gv~~~~l~ell~~aDvV 156 (333)
|..+...++.|.|.|.-|..+|+.+...|. +++.+|+.- .. ..++. ....+|.|+++.+|++
T Consensus 184 gk~l~d~~iv~~GAGaAg~~ia~~l~~~G~~~~~i~~~D~~Gli~~~r~~~l~~~k~~~a~~--~~~~~L~eai~~advl 261 (764)
T PRK12861 184 GKSIKEVKVVTSGAGAAALACLDLLVDLGLPVENIWVTDIEGVVYRGRTTLMDPDKERFAQE--TDARTLAEVIGGADVF 261 (764)
T ss_pred CCChhHcEEEEECHhHHHHHHHHHHHHcCCChhhEEEEcCCCeeeCCCcccCCHHHHHHHhh--cCCCCHHHHHhcCCEE
Confidence 567888999999999999999999999998 789888432 11 11222 1234899999999977
Q ss_pred EEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCC-ceEEEeccCCCCCCCCccchhhcCCCcEE
Q psy6348 157 TVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGH-CGGAALDVFCEEPPKSEQTFELIKHPKVI 235 (333)
Q Consensus 157 ~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~-i~gaalDV~~~EP~~~~~~~~L~~~pnvi 235 (333)
+=. . +.+.+.++.++.|.+.+++.=.|....--..+.+.+ ..|+ |. +. --...| . +.-|++
T Consensus 262 iG~-S----~~g~ft~e~v~~Ma~~PIIFaLsNPtpE~~pe~a~~-~~g~aiv--aT-Grs~~p--n-------Q~NN~l 323 (764)
T PRK12861 262 LGL-S----AGGVLKAEMLKAMAARPLILALANPTPEIFPELAHA-TRDDVVI--AT-GRSDYP--N-------QVNNVL 323 (764)
T ss_pred EEc-C----CCCCCCHHHHHHhccCCEEEECCCCCccCCHHHHHh-cCCCEEE--Ee-CCcCCC--C-------ccceee
Confidence 653 2 268999999999999999999998775322232222 2244 33 22 111112 1 466999
Q ss_pred EccCCC
Q psy6348 236 VTPHLG 241 (333)
Q Consensus 236 ~TPHi~ 241 (333)
+-|-++
T Consensus 324 ~FPgi~ 329 (764)
T PRK12861 324 CFPYIF 329 (764)
T ss_pred ecchhh
Confidence 999885
No 301
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=96.52 E-value=0.0073 Score=62.60 Aligned_cols=86 Identities=12% Similarity=0.283 Sum_probs=60.0
Q ss_pred CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCC-HHHHHhcCcccc-----C---hhh-hccCCCEEEEecCCchhhHh
Q psy6348 99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVS-VEDAAKLNIASL-----G---LED-IWPLADYITVHTPLIPQTKN 168 (333)
Q Consensus 99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~gv~~~-----~---l~e-ll~~aDvV~l~~P~t~~t~~ 168 (333)
.++-|+|+|++|+.+|+.|+..|.+|++.|.+.. .+.+++.|.... + +++ -++++|.++++++..+++..
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~~~~ 497 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGYEAGE 497 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCChHHHHH
Confidence 5789999999999999999999999999998763 344556665432 1 222 25789999999987666555
Q ss_pred hccHHHHhccCCCcEEEE
Q psy6348 169 LINAEVLKKCKKGVRVVN 186 (333)
Q Consensus 169 li~~~~~~~mk~gailIN 186 (333)
++.. ..+ +.++..+|-
T Consensus 498 iv~~-~~~-~~~~~~iia 513 (558)
T PRK10669 498 IVAS-ARE-KRPDIEIIA 513 (558)
T ss_pred HHHH-HHH-HCCCCeEEE
Confidence 5432 222 345555553
No 302
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=96.49 E-value=0.018 Score=57.85 Aligned_cols=96 Identities=20% Similarity=0.224 Sum_probs=64.0
Q ss_pred ccccCCCEEEEEec----------ChHHHHHHHHHhhCCCEEEEEcCCCCHHHH-HhcCccccChhh-hccCCCEEEEec
Q psy6348 93 GTELYGKTLAVLGL----------GRIGREVALRMQAFGMKVIGFDPMVSVEDA-AKLNIASLGLED-IWPLADYITVHT 160 (333)
Q Consensus 93 g~~l~gktvGIIGl----------G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a-~~~gv~~~~l~e-ll~~aDvV~l~~ 160 (333)
+..+.|++|+|+|+ ..-+..+++.|...|.+|.+|||....+.. +..+.. .+++ .+..||.|++++
T Consensus 309 ~~~~~~~~V~vlGlafK~~t~D~R~Spa~~ii~~L~~~g~~V~~~DP~v~~~~~~~~~~~~--~~~~~~~~~ad~vvi~t 386 (425)
T PRK15182 309 GINVEGSSVLILGFTFKENCPDIRNTRIIDVVKELGKYSCKVDIFDPWVDAEEVRREYGII--PVSEVKSSHYDAIIVAV 386 (425)
T ss_pred CCCCCCCEEEEEEeEeCCCCCccccCcHHHHHHHHHhCCCEEEEECCCCChhHHHHhcCcc--cchhhhhcCCCEEEEcc
Confidence 34578999999999 446788999999999999999998644333 223332 1222 467899999998
Q ss_pred CCchhhHhhccHHHHhccCCCcEEEEccCCcc
Q psy6348 161 PLIPQTKNLINAEVLKKCKKGVRVVNVARGGI 192 (333)
Q Consensus 161 P~t~~t~~li~~~~~~~mk~gailIN~aRg~~ 192 (333)
. .++-+.+-.+...+.||...++|++ |+-+
T Consensus 387 ~-h~~f~~~~~~~~~~~~~~~~~iiD~-r~~~ 416 (425)
T PRK15182 387 G-HQQFKQMGSEDIRGFGKDKHVLYDL-KYVL 416 (425)
T ss_pred C-CHHhhcCCHHHHHHhcCCCCEEEEC-CCCC
Confidence 7 3444433222333446645688884 5544
No 303
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=96.47 E-value=0.028 Score=54.15 Aligned_cols=125 Identities=20% Similarity=0.193 Sum_probs=78.7
Q ss_pred hHhhCCcEEEECCC-CCchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCCCEEEEEec---ChHHHHHHH
Q psy6348 40 AATRKGVLVLNAPG-GNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGL---GRIGREVAL 115 (333)
Q Consensus 40 aa~~~gI~V~n~p~-~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIGl---G~IG~~vA~ 115 (333)
.+...+|+|+|.-. ....++-. ++=++.+.++ .| .+.|+||++||= +++..+++.
T Consensus 118 ~a~~~~vPVINa~~g~~~HPtQ~--LaDl~Ti~e~------------------~G-~l~g~kv~~vGD~~~~~v~~Sl~~ 176 (305)
T PRK00856 118 LAESSDVPVINAGDGSHQHPTQA--LLDLLTIREE------------------FG-RLEGLKVAIVGDIKHSRVARSNIQ 176 (305)
T ss_pred HHHHCCCCEEECCCCCCCCcHHH--HHHHHHHHHH------------------hC-CCCCCEEEEECCCCCCcHHHHHHH
Confidence 34557899999964 34455432 2223332221 12 378999999987 589999999
Q ss_pred HHhhCCCEEEEEcCCC-CHHHHHhcCccc-cChhhhccCCCEEEEecCCc--------hhh-----HhhccHHHHhccCC
Q psy6348 116 RMQAFGMKVIGFDPMV-SVEDAAKLNIAS-LGLEDIWPLADYITVHTPLI--------PQT-----KNLINAEVLKKCKK 180 (333)
Q Consensus 116 ~l~~~G~~V~~~d~~~-~~~~a~~~gv~~-~~l~ell~~aDvV~l~~P~t--------~~t-----~~li~~~~~~~mk~ 180 (333)
.+..+|+++....|.. .+.... .... .++++.+++||+|....=.. ++- .-.++++.++.+|+
T Consensus 177 ~~~~~g~~~~~~~P~~~~~~~~~--~~~~~~d~~ea~~~aDvvyt~~~q~e~~~~~~~~~~~~~~~~y~v~~~ll~~a~~ 254 (305)
T PRK00856 177 ALTRLGAEVRLIAPPTLLPEGMP--EYGVHTDLDEVIEDADVVMMLRVQKERMDGGLLPSYEEYKRSYGLTAERLALAKP 254 (305)
T ss_pred HHHHcCCEEEEECCcccCccccc--ceEEECCHHHHhCCCCEEEECCcccccccccchHHHHHHhccCccCHHHHhhcCC
Confidence 9999999999998854 111111 1222 37899999999998743100 011 11245666666667
Q ss_pred CcEEEEc
Q psy6348 181 GVRVVNV 187 (333)
Q Consensus 181 gailIN~ 187 (333)
++++..|
T Consensus 255 ~~~~mHc 261 (305)
T PRK00856 255 DAIVMHP 261 (305)
T ss_pred CCEEECC
Confidence 7776666
No 304
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=96.45 E-value=0.0088 Score=59.88 Aligned_cols=69 Identities=13% Similarity=0.150 Sum_probs=53.3
Q ss_pred ccccCCCEEEEEec----------ChHHHHHHHHHhhCC-CEEEEEcCCCCHHHHH-hcCccccChhhhccCCCEEEEec
Q psy6348 93 GTELYGKTLAVLGL----------GRIGREVALRMQAFG-MKVIGFDPMVSVEDAA-KLNIASLGLEDIWPLADYITVHT 160 (333)
Q Consensus 93 g~~l~gktvGIIGl----------G~IG~~vA~~l~~~G-~~V~~~d~~~~~~~a~-~~gv~~~~l~ell~~aDvV~l~~ 160 (333)
+.++.|++|+|+|+ ..-...+++.|+..| .+|.+|||........ ...+...++++.+++||+|++++
T Consensus 315 ~~~~~~~~v~vlGlafK~~t~d~r~Sp~~~l~~~L~~~gg~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~ad~vvi~t 394 (415)
T PRK11064 315 DKRASEVKIACFGLAFKPNIDDLRESPAMEIAELIAQWHSGETLVVEPNIHQLPKKLDGLVTLVSLDEALATADVLVMLV 394 (415)
T ss_pred ccCcCCCEEEEEeeEECCCCcchhhChHHHHHHHHHhcCCcEEEEECCCCCchhhhccCceeeCCHHHHHhCCCEEEECC
Confidence 45688999999998 346778999999996 9999999986432211 11233458899999999999998
Q ss_pred C
Q psy6348 161 P 161 (333)
Q Consensus 161 P 161 (333)
+
T Consensus 395 ~ 395 (415)
T PRK11064 395 D 395 (415)
T ss_pred C
Confidence 7
No 305
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=96.44 E-value=0.01 Score=56.55 Aligned_cols=38 Identities=24% Similarity=0.373 Sum_probs=34.1
Q ss_pred cccCCCEEEEEecChHHHHHHHHHhhCCCE-EEEEcCCC
Q psy6348 94 TELYGKTLAVLGLGRIGREVALRMQAFGMK-VIGFDPMV 131 (333)
Q Consensus 94 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~~-V~~~d~~~ 131 (333)
.++.||++.|+|.|.+|++++..|...|.+ |.+++|..
T Consensus 122 ~~~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 122 VDVKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred CCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 357789999999999999999999999996 99999874
No 306
>PRK11579 putative oxidoreductase; Provisional
Probab=96.38 E-value=0.013 Score=56.82 Aligned_cols=65 Identities=14% Similarity=0.187 Sum_probs=44.6
Q ss_pred CEEEEEecChHHHH-HHHHHhh-CCCEEEE-EcCCCCHHHHHhc-Ccc-ccChhhhcc--CCCEEEEecCCch
Q psy6348 99 KTLAVLGLGRIGRE-VALRMQA-FGMKVIG-FDPMVSVEDAAKL-NIA-SLGLEDIWP--LADYITVHTPLIP 164 (333)
Q Consensus 99 ktvGIIGlG~IG~~-vA~~l~~-~G~~V~~-~d~~~~~~~a~~~-gv~-~~~l~ell~--~aDvV~l~~P~t~ 164 (333)
.++||||+|.||+. .+..++. -++++.+ +|+..... .... +.. +.+++++++ +.|+|++++|...
T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~-~~~~~~~~~~~~~~ell~~~~vD~V~I~tp~~~ 76 (346)
T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKV-KADWPTVTVVSEPQHLFNDPNIDLIVIPTPNDT 76 (346)
T ss_pred ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHH-HhhCCCCceeCCHHHHhcCCCCCEEEEcCCcHH
Confidence 38999999999985 4565554 4788875 67754222 2233 333 348999996 5799999999543
No 307
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=96.36 E-value=0.0058 Score=52.07 Aligned_cols=63 Identities=17% Similarity=0.289 Sum_probs=44.9
Q ss_pred CEEEEEec-ChHHHHHHHHHhh--CCCEEEEEcCCCCHHHHHhcCc-----------cc-cChhhhccCCCEEEEecC
Q psy6348 99 KTLAVLGL-GRIGREVALRMQA--FGMKVIGFDPMVSVEDAAKLNI-----------AS-LGLEDIWPLADYITVHTP 161 (333)
Q Consensus 99 ktvGIIGl-G~IG~~vA~~l~~--~G~~V~~~d~~~~~~~a~~~gv-----------~~-~~l~ell~~aDvV~l~~P 161 (333)
.||+|||. |.+|+.+|..|.. ++-++..||..........+.+ .. ....+.+++||+|+++.-
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag 78 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAG 78 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTS
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEecc
Confidence 38999999 9999999988875 4458999998743222221111 11 156788999999999873
No 308
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=96.35 E-value=0.018 Score=55.76 Aligned_cols=87 Identities=22% Similarity=0.192 Sum_probs=58.1
Q ss_pred CCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCC---C-CHHHHHhcCccccChh-----h--hccCCCEEEEecCCchh
Q psy6348 97 YGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPM---V-SVEDAAKLNIASLGLE-----D--IWPLADYITVHTPLIPQ 165 (333)
Q Consensus 97 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~---~-~~~~a~~~gv~~~~l~-----e--ll~~aDvV~l~~P~t~~ 165 (333)
.|+++.|+|.|.+|...++.++..|.+|++.++. . ..+.++++|+..+... + .....|+|+-++....
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~~- 250 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLIIEATGVPP- 250 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEecCCccchhhhhhcCCCCEEEECcCCHH-
Confidence 6889999999999999999999999999999873 2 3345666776543211 0 1234677777664211
Q ss_pred hHhhccHHHHhccCCCcEEEEcc
Q psy6348 166 TKNLINAEVLKKCKKGVRVVNVA 188 (333)
Q Consensus 166 t~~li~~~~~~~mk~gailIN~a 188 (333)
.+ .+.++.|+++..++.++
T Consensus 251 ---~~-~~~~~~l~~~G~~v~~G 269 (355)
T cd08230 251 ---LA-FEALPALAPNGVVILFG 269 (355)
T ss_pred ---HH-HHHHHHccCCcEEEEEe
Confidence 11 34556677777666654
No 309
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=96.35 E-value=0.0078 Score=59.20 Aligned_cols=62 Identities=34% Similarity=0.417 Sum_probs=45.0
Q ss_pred CCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHH--HhcCc--ccc---ChhhhccCCCEEEEe
Q psy6348 98 GKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDA--AKLNI--ASL---GLEDIWPLADYITVH 159 (333)
Q Consensus 98 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a--~~~gv--~~~---~l~ell~~aDvV~l~ 159 (333)
.++|||||-|..|+.++..++.+|++|+++|+....... ...-+ .+. .+.++++.||+|+..
T Consensus 2 ~~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~~pa~~~ad~~~~~~~~D~~~l~~~a~~~dvit~e 70 (372)
T PRK06019 2 MKTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPDSPAAQVADEVIVADYDDVAALRELAEQCDVITYE 70 (372)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchhHhCceEEecCCCCHHHHHHHHhcCCEEEeC
Confidence 479999999999999999999999999999987632111 11111 111 366778889988753
No 310
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=96.34 E-value=0.0093 Score=54.72 Aligned_cols=91 Identities=24% Similarity=0.253 Sum_probs=62.2
Q ss_pred cccCCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC-CHH-----------------------HHHhc--Ccc--c-
Q psy6348 94 TELYGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV-SVE-----------------------DAAKL--NIA--S- 143 (333)
Q Consensus 94 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~-----------------------~a~~~--gv~--~- 143 (333)
..|.+++|.|||+|.+|..+|+.|...|. ++..+|+.. +.. ..++. .++ .
T Consensus 17 ~~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~ 96 (228)
T cd00757 17 EKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAY 96 (228)
T ss_pred HHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEe
Confidence 46889999999999999999999999998 777777543 110 00111 011 1
Q ss_pred ------cChhhhccCCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEcc
Q psy6348 144 ------LGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVA 188 (333)
Q Consensus 144 ------~~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~a 188 (333)
.+++++++++|+|+.|+. +..++..+++...+ .+.-+|.++
T Consensus 97 ~~~i~~~~~~~~~~~~DvVi~~~d-~~~~r~~l~~~~~~---~~ip~i~~g 143 (228)
T cd00757 97 NERLDAENAEELIAGYDLVLDCTD-NFATRYLINDACVK---LGKPLVSGA 143 (228)
T ss_pred cceeCHHHHHHHHhCCCEEEEcCC-CHHHHHHHHHHHHH---cCCCEEEEE
Confidence 124567889999998876 56777777766554 345577764
No 311
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=96.33 E-value=0.013 Score=61.77 Aligned_cols=88 Identities=17% Similarity=0.229 Sum_probs=61.1
Q ss_pred CCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCC-HHHHHhcCcccc-----Ch---h-hhccCCCEEEEecCCchhhH
Q psy6348 98 GKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVS-VEDAAKLNIASL-----GL---E-DIWPLADYITVHTPLIPQTK 167 (333)
Q Consensus 98 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~gv~~~-----~l---~-ell~~aDvV~l~~P~t~~t~ 167 (333)
..++-|+|+|++|+.+|+.|.+.|.++++.|..+. .+..++.|.... +. + .-++++|.++++++..+.+.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~n~ 479 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTSL 479 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHHHH
Confidence 46899999999999999999999999999998763 344566666432 22 2 23568999999998655544
Q ss_pred hhccHHHHhccCCCcEEEEc
Q psy6348 168 NLINAEVLKKCKKGVRVVNV 187 (333)
Q Consensus 168 ~li~~~~~~~mk~gailIN~ 187 (333)
.++ ...+.+.|+..++--
T Consensus 480 ~i~--~~ar~~~p~~~iiaR 497 (621)
T PRK03562 480 QLV--ELVKEHFPHLQIIAR 497 (621)
T ss_pred HHH--HHHHHhCCCCeEEEE
Confidence 442 233444555555443
No 312
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=96.33 E-value=0.058 Score=51.22 Aligned_cols=182 Identities=16% Similarity=0.108 Sum_probs=114.8
Q ss_pred HHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCCCEEEEEecChHHHHHHHHHhhC----CC-------EEEEE
Q psy6348 59 ACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAF----GM-------KVIGF 127 (333)
Q Consensus 59 vAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~----G~-------~V~~~ 127 (333)
+|--+++-+++..|- .|..|...++.|+|.|.-|..+|+.+... |+ +++.+
T Consensus 4 Ta~V~lAgllnAlk~------------------~g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~v 65 (279)
T cd05312 4 TAAVALAGLLAALRI------------------TGKPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLV 65 (279)
T ss_pred HHHHHHHHHHHHHHH------------------hCCChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEE
Confidence 455577777777763 35678889999999999999999999876 87 78888
Q ss_pred cCCC-------C--H---HHHHhcC-ccccChhhhcc--CCCEEEEecCCchhhHhhccHHHHhccC---CCcEEEEccC
Q psy6348 128 DPMV-------S--V---EDAAKLN-IASLGLEDIWP--LADYITVHTPLIPQTKNLINAEVLKKCK---KGVRVVNVAR 189 (333)
Q Consensus 128 d~~~-------~--~---~~a~~~g-v~~~~l~ell~--~aDvV~l~~P~t~~t~~li~~~~~~~mk---~gailIN~aR 189 (333)
|+.- . . ..++... -...+|.|+++ ++|+++=+- ..-++|.++.++.|. +..++.=.|.
T Consensus 66 D~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~L~e~i~~v~ptvlIG~S----~~~g~ft~evv~~Ma~~~~~PIIFaLSN 141 (279)
T cd05312 66 DSKGLLTKDRKDLTPFKKPFARKDEEKEGKSLLEVVKAVKPTVLIGLS----GVGGAFTEEVVRAMAKSNERPIIFALSN 141 (279)
T ss_pred cCCCeEeCCCCcchHHHHHHHhhcCcccCCCHHHHHHhcCCCEEEEeC----CCCCCCCHHHHHHHHhcCCCCEEEECCC
Confidence 8652 1 1 1111111 02248999999 889888653 234899999999998 8999999998
Q ss_pred CcccchHhHHhhhh--cCC-ceEEEeccCCCCCCCCccchhhcCCCcEEEccCCCCC-----cHHHHHHHHHHHHHHHHH
Q psy6348 190 GGIVDENALLDSLK--CGH-CGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGAS-----TKEAQIRVAVEIAEQFIA 261 (333)
Q Consensus 190 g~~vd~~aL~~aL~--~g~-i~gaalDV~~~EP~~~~~~~~L~~~pnvi~TPHi~~~-----t~ea~~~~~~~~~~~i~~ 261 (333)
...-.|-.=.++.+ .|+ |.+.+.-+-..+.... ...-=+.-|+++-|=++-- ...--+.|...+++.|.+
T Consensus 142 Pt~~~E~~pe~a~~~t~G~ai~ATGsPf~pv~~~Gr--~~~p~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~ 219 (279)
T cd05312 142 PTSKAECTAEDAYKWTDGRALFASGSPFPPVEYNGK--TYVPGQGNNAYIFPGIGLGAILSGARHITDEMFLAAAEALAS 219 (279)
T ss_pred cCCccccCHHHHHHhhcCCEEEEeCCCCCCeeeCCe--EecCCCcceeeeccchhhHHHHcCCeeCCHHHHHHHHHHHHH
Confidence 86633433333333 355 5544432211111100 0111256799999988621 112224556666666666
Q ss_pred hHc
Q psy6348 262 LAN 264 (333)
Q Consensus 262 ~~~ 264 (333)
+..
T Consensus 220 ~~~ 222 (279)
T cd05312 220 LVT 222 (279)
T ss_pred hCC
Confidence 443
No 313
>PRK10637 cysG siroheme synthase; Provisional
Probab=96.30 E-value=0.015 Score=59.07 Aligned_cols=90 Identities=13% Similarity=0.041 Sum_probs=62.6
Q ss_pred cccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHH--Hhc-Ccccc--C-hhhhccCCCEEEEecCCchhhH
Q psy6348 94 TELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDA--AKL-NIASL--G-LEDIWPLADYITVHTPLIPQTK 167 (333)
Q Consensus 94 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a--~~~-gv~~~--~-l~ell~~aDvV~l~~P~t~~t~ 167 (333)
.+|.||++.|||.|.++..=++.|..+|.+|.++.|..+.+.. ... .+++. + .++.++.+++|+.++...+
T Consensus 8 ~~l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~~~~~~l~~~~~i~~~~~~~~~~dl~~~~lv~~at~d~~--- 84 (457)
T PRK10637 8 CQLRDRDCLLVGGGDVAERKARLLLDAGARLTVNALAFIPQFTAWADAGMLTLVEGPFDESLLDTCWLAIAATDDDA--- 84 (457)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCEEEEECCCCHH---
Confidence 5799999999999999999889999999999999998765432 122 23322 1 2456788999999886543
Q ss_pred hhccHHHHhccCCCcEEEEcc
Q psy6348 168 NLINAEVLKKCKKGVRVVNVA 188 (333)
Q Consensus 168 ~li~~~~~~~mk~gailIN~a 188 (333)
+|++.....+...+++|++
T Consensus 85 --~n~~i~~~a~~~~~lvN~~ 103 (457)
T PRK10637 85 --VNQRVSEAAEARRIFCNVV 103 (457)
T ss_pred --HhHHHHHHHHHcCcEEEEC
Confidence 3444444444444556653
No 314
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=96.30 E-value=0.012 Score=59.08 Aligned_cols=110 Identities=14% Similarity=0.055 Sum_probs=67.9
Q ss_pred CEEEEEecChHHHHHHH---HH---hhCCCEEEEEcCCCCHHH-H--------HhcC----ccc-cChhhhccCCCEEEE
Q psy6348 99 KTLAVLGLGRIGREVAL---RM---QAFGMKVIGFDPMVSVED-A--------AKLN----IAS-LGLEDIWPLADYITV 158 (333)
Q Consensus 99 ktvGIIGlG~IG~~vA~---~l---~~~G~~V~~~d~~~~~~~-a--------~~~g----v~~-~~l~ell~~aDvV~l 158 (333)
.+|+|||.|.+|...+. .+ ...|.+|..||+...... . ...+ +.. .++.+.++.||+|+.
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~Vi~ 80 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGADFVIN 80 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCEEEE
Confidence 37999999999998654 22 344679999998753211 1 1111 111 267899999999999
Q ss_pred ecCCch------------------------hhHhhc--------cHHHHhcc---CCCcEEEEccCCcccchHhHHhhhh
Q psy6348 159 HTPLIP------------------------QTKNLI--------NAEVLKKC---KKGVRVVNVARGGIVDENALLDSLK 203 (333)
Q Consensus 159 ~~P~t~------------------------~t~~li--------~~~~~~~m---k~gailIN~aRg~~vd~~aL~~aL~ 203 (333)
++|... .-.+++ -.+..+.+ .|+++++|.+-.--+-..++.+...
T Consensus 81 ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p~a~~i~~tNPv~i~t~~~~k~~~ 160 (423)
T cd05297 81 TIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCPDAWLLNYANPMAELTWALNRYTP 160 (423)
T ss_pred eeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCCCCEEEEcCChHHHHHHHHHHhCC
Confidence 998310 000111 11223333 3699999998877777777766654
Q ss_pred cCCceE
Q psy6348 204 CGHCGG 209 (333)
Q Consensus 204 ~g~i~g 209 (333)
-++.|
T Consensus 161 -~rviG 165 (423)
T cd05297 161 -IKTVG 165 (423)
T ss_pred -CCEEE
Confidence 34433
No 315
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=96.29 E-value=0.012 Score=50.02 Aligned_cols=85 Identities=25% Similarity=0.378 Sum_probs=51.6
Q ss_pred EEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhccHHHHhccCC
Q psy6348 101 LAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKK 180 (333)
Q Consensus 101 vGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~mk~ 180 (333)
+-|+|.|.+++++++.++.+|++|.++|++.. .+..++-+. +.+ ...+. +.+ .+.+
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e----------------~~~~~~~~~-~~~----~~~~~--~~~-~~~~ 56 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE----------------RFPEADEVI-CIP----PDDIL--EDL-EIDP 56 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CC----------------C-TTSSEEE-CSH----HHHHH--HHC--S-T
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc----------------ccCCCCccE-ecC----hHHHH--hcc-CCCC
Confidence 46899999999999999999999999999632 122444422 222 11111 122 4667
Q ss_pred CcEEEEccCCcccchHhHHhhhhcCCceEEE
Q psy6348 181 GVRVVNVARGGIVDENALLDSLKCGHCGGAA 211 (333)
Q Consensus 181 gailIN~aRg~~vd~~aL~~aL~~g~i~gaa 211 (333)
+..+| ++++.-.|.+.|..+|++ .....+
T Consensus 57 ~t~Vv-~th~h~~D~~~L~~~l~~-~~~YiG 85 (136)
T PF13478_consen 57 NTAVV-MTHDHELDAEALEAALAS-PARYIG 85 (136)
T ss_dssp T-EEE---S-CCCHHHHHHHHTTS-S-SEEE
T ss_pred CeEEE-EcCCchhHHHHHHHHHcC-CCCEEE
Confidence 77766 889999999999999887 343344
No 316
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=96.27 E-value=0.017 Score=55.28 Aligned_cols=89 Identities=19% Similarity=0.239 Sum_probs=57.2
Q ss_pred EEEEecChHHHHHHHHHhhCC--CEEEEEcCCCCHHHHHhcCc----------cc--cChhhhccCCCEEEEecCCch--
Q psy6348 101 LAVLGLGRIGREVALRMQAFG--MKVIGFDPMVSVEDAAKLNI----------AS--LGLEDIWPLADYITVHTPLIP-- 164 (333)
Q Consensus 101 vGIIGlG~IG~~vA~~l~~~G--~~V~~~d~~~~~~~a~~~gv----------~~--~~l~ell~~aDvV~l~~P~t~-- 164 (333)
|+|||.|.+|..+|..+...| .++..+|...........+. .. .+-.+.+++||+|+++.....
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~~~~l~~aDiVIitag~p~~~ 80 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGDYADAADADIVVITAGAPRKP 80 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCCHHHhCCCCEEEEcCCCCCCC
Confidence 589999999999999998878 58999998764433322211 11 111468899999999986321
Q ss_pred -hhH--------hhcc--HHHHhccCCCcEEEEccC
Q psy6348 165 -QTK--------NLIN--AEVLKKCKKGVRVVNVAR 189 (333)
Q Consensus 165 -~t~--------~li~--~~~~~~mk~gailIN~aR 189 (333)
.++ .++. .+.+....|++++|+.+-
T Consensus 81 ~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sN 116 (300)
T cd00300 81 GETRLDLINRNAPILRSVITNLKKYGPDAIILVVSN 116 (300)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence 111 1111 112333457889999974
No 317
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=96.23 E-value=0.025 Score=53.89 Aligned_cols=86 Identities=14% Similarity=0.255 Sum_probs=57.3
Q ss_pred CEEEEEecChHHHHHHHHHh-hCCCEEEE-EcCCCC---HHHHHhcCccc-c-Chhhhcc--CCCEEEEecCCchhhHhh
Q psy6348 99 KTLAVLGLGRIGREVALRMQ-AFGMKVIG-FDPMVS---VEDAAKLNIAS-L-GLEDIWP--LADYITVHTPLIPQTKNL 169 (333)
Q Consensus 99 ktvGIIGlG~IG~~vA~~l~-~~G~~V~~-~d~~~~---~~~a~~~gv~~-~-~l~ell~--~aDvV~l~~P~t~~t~~l 169 (333)
.++||||.|+||+..+..+. .-++++.+ +|+.+. .+.++++|+.. . +.++++. +.|+|++++|...+.
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~~H~--- 78 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAKAHA--- 78 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcHHHH---
Confidence 37999999999998876665 34667665 566553 24567778753 2 6888875 589999999843322
Q ss_pred ccHHHHhccCCCcEEEEccC
Q psy6348 170 INAEVLKKCKKGVRVVNVAR 189 (333)
Q Consensus 170 i~~~~~~~mk~gailIN~aR 189 (333)
+.....++.|..+++-.-
T Consensus 79 --e~a~~al~aGk~VIdekP 96 (285)
T TIGR03215 79 --RHARLLAELGKIVIDLTP 96 (285)
T ss_pred --HHHHHHHHcCCEEEECCc
Confidence 222333567777766543
No 318
>PLN02342 ornithine carbamoyltransferase
Probab=96.22 E-value=0.085 Score=51.73 Aligned_cols=128 Identities=13% Similarity=0.044 Sum_probs=82.4
Q ss_pred hhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCCCEEEEEec-ChHHHHHHHHH
Q psy6348 39 TAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGL-GRIGREVALRM 117 (333)
Q Consensus 39 ~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIGl-G~IG~~vA~~l 117 (333)
+.+..-+|+|+|.-+....++- +++=++.+.++ .| .+.|+||++||= .++-.+++..+
T Consensus 156 ~la~~~~vPVINA~~~~~HPtQ--aLaDl~Ti~e~------------------~G-~l~glkva~vGD~~nva~Sli~~~ 214 (348)
T PLN02342 156 DLAEYSSVPVINGLTDYNHPCQ--IMADALTIIEH------------------IG-RLEGTKVVYVGDGNNIVHSWLLLA 214 (348)
T ss_pred HHHHhCCCCEEECCCCCCChHH--HHHHHHHHHHH------------------hC-CcCCCEEEEECCCchhHHHHHHHH
Confidence 3456678999999665544443 33333333221 12 378999999997 46778888888
Q ss_pred hhCCCEEEEEcCCC---CHH---HHHhcC---ccc-cChhhhccCCCEEEEec---CCc-hh---h-----HhhccHHHH
Q psy6348 118 QAFGMKVIGFDPMV---SVE---DAAKLN---IAS-LGLEDIWPLADYITVHT---PLI-PQ---T-----KNLINAEVL 175 (333)
Q Consensus 118 ~~~G~~V~~~d~~~---~~~---~a~~~g---v~~-~~l~ell~~aDvV~l~~---P~t-~~---t-----~~li~~~~~ 175 (333)
..+|++|....|.. ..+ .+++.| +.. .++++.+++||+|..-. ... +. . .-.++++.+
T Consensus 215 ~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~~d~~eav~~aDVvy~~~W~s~~~~e~~~~~~~~~~~y~vt~ell 294 (348)
T PLN02342 215 AVLPFHFVCACPKGYEPDAKTVEKARAAGISKIEITNDPAEAVKGADVVYTDVWASMGQKEEAEKRKKAFQGFQVNEALM 294 (348)
T ss_pred HHcCCEEEEECCcccccCHHHHHHHHHhCCCcEEEEcCHHHHhCCCCEEEECCccccccchhhHHHHHhccCCccCHHHH
Confidence 89999999988754 111 123334 333 37899999999999753 111 10 0 123567777
Q ss_pred hccCCCcEEEEc
Q psy6348 176 KKCKKGVRVVNV 187 (333)
Q Consensus 176 ~~mk~gailIN~ 187 (333)
+.+|+++++..|
T Consensus 295 ~~ak~~aivMHp 306 (348)
T PLN02342 295 KLAGPQAYFMHC 306 (348)
T ss_pred hccCCCcEEeCC
Confidence 777888877777
No 319
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=96.22 E-value=0.023 Score=54.59 Aligned_cols=86 Identities=16% Similarity=0.277 Sum_probs=58.1
Q ss_pred CCEEEEEecChHHHHHHHHHhh-CCCEEEE-EcCCCC---HHHHHhcCccc--cChhhhcc-----CCCEEEEecCCchh
Q psy6348 98 GKTLAVLGLGRIGREVALRMQA-FGMKVIG-FDPMVS---VEDAAKLNIAS--LGLEDIWP-----LADYITVHTPLIPQ 165 (333)
Q Consensus 98 gktvGIIGlG~IG~~vA~~l~~-~G~~V~~-~d~~~~---~~~a~~~gv~~--~~l~ell~-----~aDvV~l~~P~t~~ 165 (333)
..++||||.|+||+..+..+.. -++++.+ +|+... ...++++|+.. .+++++++ +.|+|+.++|...+
T Consensus 4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a~~H 83 (302)
T PRK08300 4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATSAGAH 83 (302)
T ss_pred CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCCHHHH
Confidence 4589999999999997766654 4667654 566542 24567788764 36888884 58999999984222
Q ss_pred hHhhccHHHHhccCCCcEEEEcc
Q psy6348 166 TKNLINAEVLKKCKKGVRVVNVA 188 (333)
Q Consensus 166 t~~li~~~~~~~mk~gailIN~a 188 (333)
. +......+.|..+|+-+
T Consensus 84 ---~--e~a~~a~eaGk~VID~s 101 (302)
T PRK08300 84 ---V--RHAAKLREAGIRAIDLT 101 (302)
T ss_pred ---H--HHHHHHHHcCCeEEECC
Confidence 1 22223357788888875
No 320
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=96.21 E-value=0.019 Score=59.34 Aligned_cols=38 Identities=26% Similarity=0.420 Sum_probs=34.7
Q ss_pred cccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348 94 TELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV 131 (333)
Q Consensus 94 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~ 131 (333)
..+.+|++.|+|.|.+|++++..|...|++|+++++..
T Consensus 375 ~~~~~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~ 412 (529)
T PLN02520 375 SPLAGKLFVVIGAGGAGKALAYGAKEKGARVVIANRTY 412 (529)
T ss_pred cCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 45789999999999999999999999999999999864
No 321
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.20 E-value=0.019 Score=58.26 Aligned_cols=112 Identities=17% Similarity=0.108 Sum_probs=71.3
Q ss_pred ccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH------HHHHhcCcccc--ChhhhccCCCEEEEec---C
Q psy6348 93 GTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV------EDAAKLNIASL--GLEDIWPLADYITVHT---P 161 (333)
Q Consensus 93 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~------~~a~~~gv~~~--~l~ell~~aDvV~l~~---P 161 (333)
+..+.++++.|||.|.+|.++|..|+..|++|.++|..... +..++.|++.. .-.+....+|+|++.. |
T Consensus 11 ~~~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~D~Vv~s~Gi~~ 90 (480)
T PRK01438 11 HSDWQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGPTLPEDTDLVVTSPGWRP 90 (480)
T ss_pred ccCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCccccCCCCEEEECCCcCC
Confidence 34578999999999999999999999999999999965421 22345577653 1112456799999885 3
Q ss_pred CchhhH-----h--hccHHHH--hccCC----CcEEEEccCCcccchHhHHhhhhc
Q psy6348 162 LIPQTK-----N--LINAEVL--KKCKK----GVRVVNVARGGIVDENALLDSLKC 204 (333)
Q Consensus 162 ~t~~t~-----~--li~~~~~--~~mk~----gailIN~aRg~~vd~~aL~~aL~~ 204 (333)
.++... + ++++-++ ..+.+ ..+-|--+.|+--...=+...|+.
T Consensus 91 ~~~~~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~ 146 (480)
T PRK01438 91 DAPLLAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRA 146 (480)
T ss_pred CCHHHHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHH
Confidence 333211 1 2233222 33422 234555566777766667777765
No 322
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=96.20 E-value=0.034 Score=54.41 Aligned_cols=107 Identities=16% Similarity=0.072 Sum_probs=68.5
Q ss_pred CEEEEEecChHHHHHHHHHhhC--CCEEEE-EcCCCC--HHHHHhcCccc-cChhhhccCCCEEEEecCCc-hhhHhhcc
Q psy6348 99 KTLAVLGLGRIGREVALRMQAF--GMKVIG-FDPMVS--VEDAAKLNIAS-LGLEDIWPLADYITVHTPLI-PQTKNLIN 171 (333)
Q Consensus 99 ktvGIIGlG~IG~~vA~~l~~~--G~~V~~-~d~~~~--~~~a~~~gv~~-~~l~ell~~aDvV~l~~P~t-~~t~~li~ 171 (333)
.+|||||. .+|+..++.++.. +.++.+ +|+... .+.++++|+.. .++++++.+.|++++++|.+ +...|.
T Consensus 4 ~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~~y~~~eell~d~Di~~V~ipt~~P~~~H~-- 80 (343)
T TIGR01761 4 QSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLGVPLYCEVEELPDDIDIACVVVRSAIVGGQGS-- 80 (343)
T ss_pred cEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCCccCCHHHHhcCCCEEEEEeCCCCCCccHH--
Confidence 68999999 6899999888765 477766 677652 34556678753 48999999999999999842 222221
Q ss_pred HHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCce
Q psy6348 172 AEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCG 208 (333)
Q Consensus 172 ~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~ 208 (333)
+-..+.|+.|.-++-=-=-..-+.++|+++.++..+.
T Consensus 81 e~a~~aL~aGkHVL~EKPla~~Ea~el~~~A~~~g~~ 117 (343)
T TIGR01761 81 ALARALLARGIHVLQEHPLHPRDIQDLLRLAERQGRR 117 (343)
T ss_pred HHHHHHHhCCCeEEEcCCCCHHHHHHHHHHHHHcCCE
Confidence 2223335555433322111144556677777776655
No 323
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=96.19 E-value=0.024 Score=54.56 Aligned_cols=87 Identities=21% Similarity=0.230 Sum_probs=58.3
Q ss_pred CCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC-CHHHHHhcCcccc------Chhhhcc---CCCEEEEecCCchh
Q psy6348 97 YGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV-SVEDAAKLNIASL------GLEDIWP---LADYITVHTPLIPQ 165 (333)
Q Consensus 97 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~~gv~~~------~l~ell~---~aDvV~l~~P~t~~ 165 (333)
.|+++.|+|.|.+|...++.++..|. +|++.++.. ..+.++++|...+ +++++.. ..|+++-++... .
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G~~-~ 247 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSGHP-S 247 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCCCH-H
Confidence 58999999999999999999999999 688888765 3456677776432 1222221 257776665421 1
Q ss_pred hHhhccHHHHhccCCCcEEEEcc
Q psy6348 166 TKNLINAEVLKKCKKGVRVVNVA 188 (333)
Q Consensus 166 t~~li~~~~~~~mk~gailIN~a 188 (333)
+ + ...++.++++..++.++
T Consensus 248 ~---~-~~~~~~l~~~G~iv~~G 266 (343)
T PRK09880 248 S---I-NTCLEVTRAKGVMVQVG 266 (343)
T ss_pred H---H-HHHHHHhhcCCEEEEEc
Confidence 1 1 34456667777777664
No 324
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=96.19 E-value=0.013 Score=58.00 Aligned_cols=98 Identities=16% Similarity=0.208 Sum_probs=63.2
Q ss_pred CCCEEEEEec-ChHHHHHHHHHhhC-CCEEEEEcCCCCHH-HHHhcC-------cc-ccChhh-hccCCCEEEEecCCch
Q psy6348 97 YGKTLAVLGL-GRIGREVALRMQAF-GMKVIGFDPMVSVE-DAAKLN-------IA-SLGLED-IWPLADYITVHTPLIP 164 (333)
Q Consensus 97 ~gktvGIIGl-G~IG~~vA~~l~~~-G~~V~~~d~~~~~~-~a~~~g-------v~-~~~l~e-ll~~aDvV~l~~P~t~ 164 (333)
..++|+|+|. |.+|+.+.+.|... +++|..+.+..+.. ...... .. ..+++. .++++|+|++++|. .
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp~-~ 115 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLPH-G 115 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcCCH-H
Confidence 4569999999 99999999999876 77888876533211 111111 11 112332 25889999999984 3
Q ss_pred hhHhhccHHHHhccCCCcEEEEccCCcccchHhHHh
Q psy6348 165 QTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLD 200 (333)
Q Consensus 165 ~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~ 200 (333)
. ..+....|+.|..+|+.+..-..+.++.++
T Consensus 116 ~-----s~~i~~~~~~g~~VIDlSs~fRl~~~~~y~ 146 (381)
T PLN02968 116 T-----TQEIIKALPKDLKIVDLSADFRLRDIAEYE 146 (381)
T ss_pred H-----HHHHHHHHhCCCEEEEcCchhccCCcccch
Confidence 2 334444456789999998766666554443
No 325
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=96.18 E-value=0.018 Score=56.24 Aligned_cols=92 Identities=14% Similarity=0.184 Sum_probs=56.2
Q ss_pred CEEEEEec-ChHHHHHHHHHhhC-CCEEEE-EcCCCCHHHH-HhcC-c------cccChhh-hccCCCEEEEecCCchhh
Q psy6348 99 KTLAVLGL-GRIGREVALRMQAF-GMKVIG-FDPMVSVEDA-AKLN-I------ASLGLED-IWPLADYITVHTPLIPQT 166 (333)
Q Consensus 99 ktvGIIGl-G~IG~~vA~~l~~~-G~~V~~-~d~~~~~~~a-~~~g-v------~~~~l~e-ll~~aDvV~l~~P~t~~t 166 (333)
++|+|+|. |.+|+.+++.+... ++++.+ +++....+.. ...+ + .+.++++ ...++|+|++|+|... .
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~alP~~~-~ 81 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLALPHGV-S 81 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECCCcHH-H
Confidence 58999997 99999999999876 677755 5533221111 1111 1 1223333 4578999999999532 2
Q ss_pred HhhccHHHHhccCCCcEEEEccCCcccch
Q psy6348 167 KNLINAEVLKKCKKGVRVVNVARGGIVDE 195 (333)
Q Consensus 167 ~~li~~~~~~~mk~gailIN~aRg~~vd~ 195 (333)
..+. . ..++.|..+||.|-.--.+.
T Consensus 82 ~~~v-~---~a~~aG~~VID~S~~fR~~~ 106 (343)
T PRK00436 82 MDLA-P---QLLEAGVKVIDLSADFRLKD 106 (343)
T ss_pred HHHH-H---HHHhCCCEEEECCcccCCCC
Confidence 2221 1 22357899999975444433
No 326
>PRK04148 hypothetical protein; Provisional
Probab=96.18 E-value=0.016 Score=49.22 Aligned_cols=72 Identities=26% Similarity=0.285 Sum_probs=53.7
Q ss_pred CCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCC-HHHHHhcCcccc------ChhhhccCCCEEEEecCCchhhHhh
Q psy6348 97 YGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVS-VEDAAKLNIASL------GLEDIWPLADYITVHTPLIPQTKNL 169 (333)
Q Consensus 97 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~gv~~~------~l~ell~~aDvV~l~~P~t~~t~~l 169 (333)
+++++.+||+| -|..+|..|+..|.+|++.|.+.. .+.+++.++..+ .--++.+.+|+|--.-|-.+-...+
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirpp~el~~~~ 94 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRPPRDLQPFI 94 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCCCHHHHHHH
Confidence 46899999999 899999999999999999998763 344556665432 2346778899998888854433333
No 327
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.17 E-value=0.014 Score=58.58 Aligned_cols=110 Identities=15% Similarity=0.165 Sum_probs=69.6
Q ss_pred ccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHH---HHHh--cCcccc--C-hhhhccCCCEEEEecCC---c
Q psy6348 95 ELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVE---DAAK--LNIASL--G-LEDIWPLADYITVHTPL---I 163 (333)
Q Consensus 95 ~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~---~a~~--~gv~~~--~-l~ell~~aDvV~l~~P~---t 163 (333)
++.+|++.|+|.|.+|.++|+.|...|++|.++|.....+ ..++ .|+... . .++.+.++|+|+..--- +
T Consensus 2 ~~~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~~~~~~~d~vv~spgi~~~~ 81 (445)
T PRK04308 2 TFQNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGISERQ 81 (445)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhccCCcEEEeCCCCHHHHhCCCEEEECCCCCCCC
Confidence 3678999999999999999999999999999999765332 2222 265442 1 23445689999876322 2
Q ss_pred hhhHh-------hccHH-HHhc-cC---CCcEEEEccCCcccchHhHHhhhhc
Q psy6348 164 PQTKN-------LINAE-VLKK-CK---KGVRVVNVARGGIVDENALLDSLKC 204 (333)
Q Consensus 164 ~~t~~-------li~~~-~~~~-mk---~gailIN~aRg~~vd~~aL~~aL~~ 204 (333)
+..+. ++.+. .+.. ++ ...+-|--+.|+--...-+...|+.
T Consensus 82 p~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~ 134 (445)
T PRK04308 82 PDIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIK 134 (445)
T ss_pred HHHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHH
Confidence 22221 22222 3223 32 2345555566777777777777765
No 328
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=96.15 E-value=0.026 Score=54.32 Aligned_cols=139 Identities=16% Similarity=0.130 Sum_probs=87.7
Q ss_pred CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCcccc-------------ChhhhccCCCEEEEecCCchh
Q psy6348 99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASL-------------GLEDIWPLADYITVHTPLIPQ 165 (333)
Q Consensus 99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~-------------~l~ell~~aDvV~l~~P~t~~ 165 (333)
++|.|+|.|.||+-++.+|...|..|..+.+....+..++.|.... .-.+.+..+|+|++++- +-+
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vK-a~q 79 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRRLEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVK-AYQ 79 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHHHHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEEec-ccc
Confidence 4899999999999999999999987887776554455555554221 22355678999999985 334
Q ss_pred hHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCC--CCCCCCccchhhcCCCcEEEccCCCCC
Q psy6348 166 TKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFC--EEPPKSEQTFELIKHPKVIVTPHLGAS 243 (333)
Q Consensus 166 t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~--~EP~~~~~~~~L~~~pnvi~TPHi~~~ 243 (333)
+...+ +.....+++.+.++-. .-++=.++.+.+.....++- .++..+. .+.+.. -....+..+.+.+.-+..
T Consensus 80 ~~~al-~~l~~~~~~~t~vl~l-qNG~g~~e~l~~~~~~~~il-~G~~~~~a~~~~~g~---v~~~g~g~~~ig~~~~~~ 153 (307)
T COG1893 80 LEEAL-PSLAPLLGPNTVVLFL-QNGLGHEEELRKILPKETVL-GGVTTHGAVREGPGH---VVHTGLGDTVIGELRGGR 153 (307)
T ss_pred HHHHH-HHhhhcCCCCcEEEEE-eCCCcHHHHHHHhCCcceEE-EEEeeeeeEecCCce---EEEecCCcEEEccCCCCc
Confidence 44444 5566777888766644 34455555666666666444 2333322 222111 123345677777777755
Q ss_pred c
Q psy6348 244 T 244 (333)
Q Consensus 244 t 244 (333)
.
T Consensus 154 ~ 154 (307)
T COG1893 154 D 154 (307)
T ss_pred h
Confidence 4
No 329
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=96.13 E-value=0.016 Score=55.35 Aligned_cols=39 Identities=23% Similarity=0.391 Sum_probs=34.4
Q ss_pred ccccCCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC
Q psy6348 93 GTELYGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV 131 (333)
Q Consensus 93 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~ 131 (333)
+..+.||++.|+|.|..+++++..|...|. +|.+++|+.
T Consensus 119 ~~~~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~ 158 (288)
T PRK12749 119 GFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD 158 (288)
T ss_pred CCCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 346789999999999999999998888887 899999975
No 330
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=96.13 E-value=0.024 Score=52.17 Aligned_cols=90 Identities=13% Similarity=0.054 Sum_probs=61.5
Q ss_pred ccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHH---HhcCcccc--Ch-hhhccCCCEEEEecCCchhh
Q psy6348 93 GTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDA---AKLNIASL--GL-EDIWPLADYITVHTPLIPQT 166 (333)
Q Consensus 93 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a---~~~gv~~~--~l-~ell~~aDvV~l~~P~t~~t 166 (333)
..++.|+++.|||.|.++..=++.|..+|.+|.++.|..+++.. ....+++. ++ .+.+..+++|+.++...+
T Consensus 20 ~l~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~~~~i~~~~r~~~~~dl~g~~LViaATdD~~-- 97 (223)
T PRK05562 20 SLLSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLKKYGNLKLIKGNYDKEFIKDKHLIVIATDDEK-- 97 (223)
T ss_pred EEECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCcEEEECCCCHH--
Confidence 45677999999999999999889999999999999998865432 11123322 21 244678999999876332
Q ss_pred HhhccHHHHhccCCCcEEEEc
Q psy6348 167 KNLINAEVLKKCKKGVRVVNV 187 (333)
Q Consensus 167 ~~li~~~~~~~mk~gailIN~ 187 (333)
+++...+..+.-.+++|+
T Consensus 98 ---vN~~I~~~a~~~~~lvn~ 115 (223)
T PRK05562 98 ---LNNKIRKHCDRLYKLYID 115 (223)
T ss_pred ---HHHHHHHHHHHcCCeEEE
Confidence 444444445544456665
No 331
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=96.09 E-value=0.022 Score=55.67 Aligned_cols=82 Identities=23% Similarity=0.254 Sum_probs=57.8
Q ss_pred cccCCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC---------------------CHH-----HHHhcC--cc--
Q psy6348 94 TELYGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV---------------------SVE-----DAAKLN--IA-- 142 (333)
Q Consensus 94 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~---------------------~~~-----~a~~~g--v~-- 142 (333)
..|..++|.|||+|.+|..+|..|...|. ++..+|... .+. ..++.. +.
T Consensus 20 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~ 99 (339)
T PRK07688 20 QKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVE 99 (339)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEE
Confidence 46889999999999999999999999999 898888752 110 111111 11
Q ss_pred c-------cChhhhccCCCEEEEecCCchhhHhhccHHHHh
Q psy6348 143 S-------LGLEDIWPLADYITVHTPLIPQTKNLINAEVLK 176 (333)
Q Consensus 143 ~-------~~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~ 176 (333)
. .+++++++++|+|+.++- +.+++.++++-..+
T Consensus 100 ~~~~~~~~~~~~~~~~~~DlVid~~D-n~~~r~~ln~~~~~ 139 (339)
T PRK07688 100 AIVQDVTAEELEELVTGVDLIIDATD-NFETRFIVNDAAQK 139 (339)
T ss_pred EEeccCCHHHHHHHHcCCCEEEEcCC-CHHHHHHHHHHHHH
Confidence 1 134577888998888764 56777777766554
No 332
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=96.09 E-value=0.022 Score=54.58 Aligned_cols=67 Identities=22% Similarity=0.263 Sum_probs=49.1
Q ss_pred CEEEEEecChHHH-HHHHHHhhCC--CE-EEEEcCCCC--HHHHHhcCcc--ccChhhhccC--CCEEEEecCCchh
Q psy6348 99 KTLAVLGLGRIGR-EVALRMQAFG--MK-VIGFDPMVS--VEDAAKLNIA--SLGLEDIWPL--ADYITVHTPLIPQ 165 (333)
Q Consensus 99 ktvGIIGlG~IG~-~vA~~l~~~G--~~-V~~~d~~~~--~~~a~~~gv~--~~~l~ell~~--aDvV~l~~P~t~~ 165 (333)
.++||||+|.+++ ..+..++..+ ++ |.++|+... .+.++++++. +.+++++++. .|+|++++|....
T Consensus 4 irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~~H 80 (342)
T COG0673 4 IRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNALH 80 (342)
T ss_pred eEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCChhh
Confidence 5899999997765 5788888776 34 445688763 3455777874 4489999986 5999999995443
No 333
>PRK06270 homoserine dehydrogenase; Provisional
Probab=96.07 E-value=0.018 Score=56.15 Aligned_cols=108 Identities=22% Similarity=0.247 Sum_probs=65.1
Q ss_pred EEEEEecChHHHHHHHHHhhC----------CCEEEE-EcCCC--------CHHHH----HhcCc-c-------ccChhh
Q psy6348 100 TLAVLGLGRIGREVALRMQAF----------GMKVIG-FDPMV--------SVEDA----AKLNI-A-------SLGLED 148 (333)
Q Consensus 100 tvGIIGlG~IG~~vA~~l~~~----------G~~V~~-~d~~~--------~~~~a----~~~gv-~-------~~~l~e 148 (333)
+|||+|+|.||+.+++.+... +++|.+ +|+.. ..+.+ ...+. . ..++++
T Consensus 4 ~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~~e 83 (341)
T PRK06270 4 KIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISGLE 83 (341)
T ss_pred EEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCHHH
Confidence 799999999999999988654 567655 45421 22221 12221 1 126788
Q ss_pred hc--cCCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcc-cchHhHHhhhhcCCc
Q psy6348 149 IW--PLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGI-VDENALLDSLKCGHC 207 (333)
Q Consensus 149 ll--~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~-vd~~aL~~aL~~g~i 207 (333)
++ .+.|+|+.++|....+...--.-....|+.|.-+|-...+.+ ...++|.++.++..+
T Consensus 84 ll~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~ 145 (341)
T PRK06270 84 VIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGV 145 (341)
T ss_pred HhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCC
Confidence 87 468999999996544322212223455677777776543332 235677777766555
No 334
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=96.04 E-value=0.03 Score=52.73 Aligned_cols=63 Identities=25% Similarity=0.341 Sum_probs=43.7
Q ss_pred CEEEEEe-cChHHHHHHHHHhh-CCCEEEE-EcCCCCH----HHHHh-----cCccc-cChhhhccCCCEEEEecC
Q psy6348 99 KTLAVLG-LGRIGREVALRMQA-FGMKVIG-FDPMVSV----EDAAK-----LNIAS-LGLEDIWPLADYITVHTP 161 (333)
Q Consensus 99 ktvGIIG-lG~IG~~vA~~l~~-~G~~V~~-~d~~~~~----~~a~~-----~gv~~-~~l~ell~~aDvV~l~~P 161 (333)
.+|+|+| +|+||+.+++.+.. -++++.+ +|+..+. ..... .|+.. .+++++...+|+|+.++|
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l~~~~DvVIdfT~ 77 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAVETDPDVLIDFTT 77 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHhcCCCCEEEECCC
Confidence 3899999 69999999998875 6888766 6743211 11111 24443 368888667999999986
No 335
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=95.99 E-value=0.022 Score=52.98 Aligned_cols=91 Identities=24% Similarity=0.242 Sum_probs=60.9
Q ss_pred cccCCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC-CHH-----------------------HHHhc--Cccc---
Q psy6348 94 TELYGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV-SVE-----------------------DAAKL--NIAS--- 143 (333)
Q Consensus 94 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~-----------------------~a~~~--gv~~--- 143 (333)
..|..++|.|||+|.+|..+|+.|...|. ++..+|... +.. ..++. .++.
T Consensus 28 ~~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~ 107 (245)
T PRK05690 28 EKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETI 107 (245)
T ss_pred HHhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEE
Confidence 46899999999999999999999999997 677777543 110 00111 1110
Q ss_pred ---c---ChhhhccCCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEcc
Q psy6348 144 ---L---GLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVA 188 (333)
Q Consensus 144 ---~---~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~a 188 (333)
. +.+++++++|+|+.++ .+.+++..+++-..+.- .-+|..+
T Consensus 108 ~~~i~~~~~~~~~~~~DiVi~~~-D~~~~r~~ln~~~~~~~---ip~v~~~ 154 (245)
T PRK05690 108 NARLDDDELAALIAGHDLVLDCT-DNVATRNQLNRACFAAK---KPLVSGA 154 (245)
T ss_pred eccCCHHHHHHHHhcCCEEEecC-CCHHHHHHHHHHHHHhC---CEEEEee
Confidence 1 2356788999988887 46677777776655443 3466643
No 336
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=95.93 E-value=0.12 Score=51.43 Aligned_cols=65 Identities=25% Similarity=0.216 Sum_probs=49.2
Q ss_pred ccCCCEEEEEec-----C---hHHHHHHHHHhhCCCEEEEEcCCC---CHH---H----HHhcCc--cc-cChhhhccCC
Q psy6348 95 ELYGKTLAVLGL-----G---RIGREVALRMQAFGMKVIGFDPMV---SVE---D----AAKLNI--AS-LGLEDIWPLA 153 (333)
Q Consensus 95 ~l~gktvGIIGl-----G---~IG~~vA~~l~~~G~~V~~~d~~~---~~~---~----a~~~gv--~~-~~l~ell~~a 153 (333)
.+.|+||+|+|- | ++.++++..+..+|++|....|.. .++ . +++.|. +. .++++.+++|
T Consensus 184 ~l~g~kVaivg~~~~~~g~~~~Va~Sl~~~~~~lG~~v~~~~P~~~~~~~~i~~~a~~~~~~~G~~i~~~~d~~eav~~a 263 (395)
T PRK07200 184 NLKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYDLMPEVVEVAKKNAKASGGSFRQVNSMEEAFKDA 263 (395)
T ss_pred ccCCCEEEEEeccccccCCcchHHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence 378999999985 5 677899999999999999998863 122 1 233453 32 3899999999
Q ss_pred CEEEEe
Q psy6348 154 DYITVH 159 (333)
Q Consensus 154 DvV~l~ 159 (333)
|+|..-
T Consensus 264 DvVYtd 269 (395)
T PRK07200 264 DIVYPK 269 (395)
T ss_pred CEEEEc
Confidence 999876
No 337
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=95.91 E-value=0.072 Score=51.45 Aligned_cols=102 Identities=19% Similarity=0.239 Sum_probs=69.1
Q ss_pred hhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCcc-ccCCCEEEEEec-ChHHHHHHHH
Q psy6348 39 TAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGT-ELYGKTLAVLGL-GRIGREVALR 116 (333)
Q Consensus 39 ~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~-~l~gktvGIIGl-G~IG~~vA~~ 116 (333)
+.+..-.|+|+|.-++...++- +++=++.+.++ .|. .+.|+||++||- +++..+++..
T Consensus 113 ~~a~~~~vPVINag~~~~HPtQ--aL~Dl~Ti~e~------------------~g~~~l~g~~va~vGd~~rv~~Sl~~~ 172 (311)
T PRK14804 113 VMKNGSQVPVINGCDNMFHPCQ--SLADIMTIALD------------------SPEIPLNQKQLTYIGVHNNVVNSLIGI 172 (311)
T ss_pred HHHHHCCCCEEECCCCCCChHH--HHHHHHHHHHH------------------hCCCCCCCCEEEEECCCCcHHHHHHHH
Confidence 3455578999999766555543 22223333221 132 478999999998 7999999999
Q ss_pred HhhCCCEEEEEcCCCCH-H-------HHHhcC-ccc-cChhhhccCCCEEEEec
Q psy6348 117 MQAFGMKVIGFDPMVSV-E-------DAAKLN-IAS-LGLEDIWPLADYITVHT 160 (333)
Q Consensus 117 l~~~G~~V~~~d~~~~~-~-------~a~~~g-v~~-~~l~ell~~aDvV~l~~ 160 (333)
+..+|++|....|..-. + .+++.| +.. .++++.++++|+|..-+
T Consensus 173 ~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~g~i~~~~d~~~av~~aDvvy~d~ 226 (311)
T PRK14804 173 TAALGIHLTLVTPIAAKENIHAQTVERAKKKGTLSWEMNLHKAVSHADYVYTDT 226 (311)
T ss_pred HHHcCCEEEEECCCCccHHHHHHHHHHHHhcCCeEEEeCHHHHhCCCCEEEeee
Confidence 99999999999885421 1 122233 333 37999999999999843
No 338
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=95.88 E-value=0.13 Score=50.15 Aligned_cols=103 Identities=17% Similarity=0.124 Sum_probs=65.8
Q ss_pred hHhhCCcEEEECCCC-CchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCCCEEEEEec---ChHHHHHHH
Q psy6348 40 AATRKGVLVLNAPGG-NFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGL---GRIGREVAL 115 (333)
Q Consensus 40 aa~~~gI~V~n~p~~-n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIGl---G~IG~~vA~ 115 (333)
.+....|+|+|.-.+ +..++- +++=++.+..++. ..|..+.|+||++||= +++..+++.
T Consensus 117 ~a~~~~vPVINa~~g~~~HPtQ--aLaDl~Ti~e~~~---------------~~g~~l~g~kia~vGD~~~~rv~~Sl~~ 179 (338)
T PRK08192 117 FAEGSRVPVINGGDGSNEHPTQ--ALLDLFTIQKELA---------------HAGRGIDGMHIAMVGDLKFGRTVHSLSR 179 (338)
T ss_pred HHHhCCCCEEECCCCCCCCcHH--HHHHHHHHHHHhh---------------ccCCCcCCCEEEEECcCCCCchHHHHHH
Confidence 345578999998653 545543 2333333322110 0133588999999998 588888887
Q ss_pred HHh-hCCCEEEEEcCCC---CHH---HHHhcCc--cc-cChhhhccCCCEEEEe
Q psy6348 116 RMQ-AFGMKVIGFDPMV---SVE---DAAKLNI--AS-LGLEDIWPLADYITVH 159 (333)
Q Consensus 116 ~l~-~~G~~V~~~d~~~---~~~---~a~~~gv--~~-~~l~ell~~aDvV~l~ 159 (333)
.+. -+|++|....|.. +.+ .+++.|. +. .++++.+++||+|..-
T Consensus 180 ~l~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~ 233 (338)
T PRK08192 180 LLCMYKNVSFTLVSPKELAMPDYVISDIENAGHKITITDQLEGNLDKADILYLT 233 (338)
T ss_pred HHHHhcCCEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHHccCCEEEEc
Confidence 765 4599999888753 222 2233443 32 3789999999999884
No 339
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=95.88 E-value=0.026 Score=62.47 Aligned_cols=66 Identities=18% Similarity=0.194 Sum_probs=46.0
Q ss_pred CCCEEEEEecChHHHHHHHHHhhC-CCE-------------EEEEcCCCCHH--HHHhc-Cc---cc--cC---hhhhcc
Q psy6348 97 YGKTLAVLGLGRIGREVALRMQAF-GMK-------------VIGFDPMVSVE--DAAKL-NI---AS--LG---LEDIWP 151 (333)
Q Consensus 97 ~gktvGIIGlG~IG~~vA~~l~~~-G~~-------------V~~~d~~~~~~--~a~~~-gv---~~--~~---l~ell~ 151 (333)
..|+|+|||.|+||+.+|+.|... +.+ |.+.|++.... .++.. ++ .. .+ +.++++
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~ 647 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYVS 647 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhhc
Confidence 467999999999999999999753 333 88889876332 22222 42 22 13 344457
Q ss_pred CCCEEEEecCC
Q psy6348 152 LADYITVHTPL 162 (333)
Q Consensus 152 ~aDvV~l~~P~ 162 (333)
++|+|++++|.
T Consensus 648 ~~DaVIsalP~ 658 (1042)
T PLN02819 648 QVDVVISLLPA 658 (1042)
T ss_pred CCCEEEECCCc
Confidence 89999999995
No 340
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.85 E-value=0.02 Score=57.55 Aligned_cols=107 Identities=16% Similarity=0.160 Sum_probs=66.9
Q ss_pred CCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH---HHHHh--cCcccc---ChhhhccCCCEEEEec--C-Cchhh
Q psy6348 98 GKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV---EDAAK--LNIASL---GLEDIWPLADYITVHT--P-LIPQT 166 (333)
Q Consensus 98 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~---~~a~~--~gv~~~---~l~ell~~aDvV~l~~--P-~t~~t 166 (333)
.-++.|+|+|.+|.++|+.|+..|++|.++|..... +..++ .|+... .-.+.+.++|+|+..- | .++..
T Consensus 6 ~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~d~vV~sp~i~~~~p~~ 85 (448)
T PRK03803 6 DGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQPPGLDTLAREFPDVELRCGGFDCELLVQASEIIISPGLALDTPAL 85 (448)
T ss_pred CCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHhhcCCcEEEeCCCChHHhcCCCEEEECCCCCCCCHHH
Confidence 348999999999999999999999999999976532 22223 366542 1234567899887652 2 22221
Q ss_pred H-------hhccHH-HH-hccCCCcEEEEccCCcccchHhHHhhhhc
Q psy6348 167 K-------NLINAE-VL-KKCKKGVRVVNVARGGIVDENALLDSLKC 204 (333)
Q Consensus 167 ~-------~li~~~-~~-~~mk~gailIN~aRg~~vd~~aL~~aL~~ 204 (333)
. .++++- .+ ..++...+-|--+.|+--...-+...|+.
T Consensus 86 ~~a~~~~i~i~~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~ 132 (448)
T PRK03803 86 RAAAAMGIEVIGDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKA 132 (448)
T ss_pred HHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHh
Confidence 1 123332 23 23343345555566777777777777764
No 341
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.84 E-value=0.02 Score=58.10 Aligned_cols=108 Identities=18% Similarity=0.148 Sum_probs=67.4
Q ss_pred cCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCC--HH---HHHhcCcccc---ChhhhccCCCEEEEec--CC-ch
Q psy6348 96 LYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVS--VE---DAAKLNIASL---GLEDIWPLADYITVHT--PL-IP 164 (333)
Q Consensus 96 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~--~~---~a~~~gv~~~---~l~ell~~aDvV~l~~--P~-t~ 164 (333)
+.||+++|+|+|.-|.+.|+.|+..|++|+++|.... .. ..++ +.... ..++.+.++|+|+..- |. ++
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~d~vV~SpgI~~~~p 84 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRALRAHLPAQALTLFCNAVEAREVGALAD-AALLVETEASAQRLAAFDVVVKSPGISPYRP 84 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCcccchHHHHHhh-cCEEEeCCCChHHccCCCEEEECCCCCCCCH
Confidence 4689999999999999999999999999999996432 11 1222 32221 2235567899988753 32 22
Q ss_pred hhH-------hhccHHHH--hc-cC-----CCcEEEEccCCcccchHhHHhhhhc
Q psy6348 165 QTK-------NLINAEVL--KK-CK-----KGVRVVNVARGGIVDENALLDSLKC 204 (333)
Q Consensus 165 ~t~-------~li~~~~~--~~-mk-----~gailIN~aRg~~vd~~aL~~aL~~ 204 (333)
..+ .++++-++ .. ++ ...+-|--+.|+--...-+...|+.
T Consensus 85 ~~~~a~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~ 139 (468)
T PRK04690 85 EALAAAARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRA 139 (468)
T ss_pred HHHHHHHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHh
Confidence 111 13444443 32 32 1345555566777777767777764
No 342
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=95.83 E-value=0.034 Score=52.97 Aligned_cols=69 Identities=25% Similarity=0.382 Sum_probs=49.1
Q ss_pred cccCCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCCCH--HHHHhcC-----ccccChhhh--ccCCCEEEEecCC
Q psy6348 94 TELYGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMVSV--EDAAKLN-----IASLGLEDI--WPLADYITVHTPL 162 (333)
Q Consensus 94 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~--~~a~~~g-----v~~~~l~el--l~~aDvV~l~~P~ 162 (333)
....|+++.|+|.|-.+++++..|+..|. +|++++|+.+. +.++..+ +....+.++ ..++|+|+.++|.
T Consensus 122 ~~~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~~~dliINaTp~ 200 (283)
T COG0169 122 VDVTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEGLEEADLLINATPV 200 (283)
T ss_pred cccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcccccccccccccccccccCEEEECCCC
Confidence 45678999999999999999999999995 79999997633 2222222 112223222 2268999999984
No 343
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=95.80 E-value=0.018 Score=49.96 Aligned_cols=63 Identities=19% Similarity=0.235 Sum_probs=48.0
Q ss_pred EEEEec-ChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCcccc--------ChhhhccCCCEEEEecCCch
Q psy6348 101 LAVLGL-GRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASL--------GLEDIWPLADYITVHTPLIP 164 (333)
Q Consensus 101 vGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~--------~l~ell~~aDvV~l~~P~t~ 164 (333)
|.|+|. |.+|+.+++.|...|++|+++.|..+.... ..+++.+ ++.+.++.+|+|+.+++.+.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~-~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~~ 72 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED-SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPPP 72 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH-CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHSTT
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc-ccccccceeeehhhhhhhhhhhhcchhhhhhhhhc
Confidence 578995 999999999999999999999987643222 3444322 35677889999999997433
No 344
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=95.79 E-value=0.021 Score=53.80 Aligned_cols=100 Identities=18% Similarity=0.130 Sum_probs=66.9
Q ss_pred CccccCCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCCCH---HH----HHhcCccc-cChhhhccCCCEEEEecCC
Q psy6348 92 TGTELYGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMVSV---ED----AAKLNIAS-LGLEDIWPLADYITVHTPL 162 (333)
Q Consensus 92 ~g~~l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~~---~~----a~~~gv~~-~~l~ell~~aDvV~l~~P~ 162 (333)
.|.++...|++|+|+ |.||..+|+.+...+.+....-|.... .. -+++|-.. .+++..+.+.|+++....
T Consensus 161 lGidlsqatvaivGa~G~Ia~~Iar~la~~~~~~~ll~r~aea~~rq~l~~l~e~~~~~~i~s~d~~~~~e~i~v~vAs- 239 (351)
T COG5322 161 LGIDLSQATVAIVGATGDIASAIARWLAPKVGVKELLLRDAEARNRQRLTLLQEELGRGKIMSLDYALPQEDILVWVAS- 239 (351)
T ss_pred hCcCHHHCeEEEecCCchHHHHHHHHhccccCEEEEecccHHhhhhhhhhhcccccCCCeeeeccccccccceEEEEee-
Confidence 588999999999999 999999999999888766555443211 11 12223332 367766666665554432
Q ss_pred chhhHhhccHHHHhccCCCcEEEEccCCcccchH
Q psy6348 163 IPQTKNLINAEVLKKCKKGVRVVNVARGGIVDEN 196 (333)
Q Consensus 163 t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~ 196 (333)
..+-..|+.+. +|||+.+++-++..-+|+.
T Consensus 240 -~~~g~~I~pq~---lkpg~~ivD~g~P~dvd~~ 269 (351)
T COG5322 240 -MPKGVEIFPQH---LKPGCLIVDGGYPKDVDTS 269 (351)
T ss_pred -cCCCceechhh---ccCCeEEEcCCcCcccccc
Confidence 23345565554 6999999999888766654
No 345
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=95.78 E-value=0.11 Score=47.02 Aligned_cols=91 Identities=29% Similarity=0.229 Sum_probs=59.3
Q ss_pred cCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHhcCccc-c-----Chhhh-----ccCCCEEEEecCCc
Q psy6348 96 LYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV-SVEDAAKLNIAS-L-----GLEDI-----WPLADYITVHTPLI 163 (333)
Q Consensus 96 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~gv~~-~-----~l~el-----l~~aDvV~l~~P~t 163 (333)
..|+++.|.|.|.+|+.+++.++..|.+|++.++.. ..+.+++.|... . +..+. -...|+++.+++..
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~ 212 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVGGP 212 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECCCCH
Confidence 357899999999999999999999999999998864 223344444321 1 11111 24578887776531
Q ss_pred hhhHhhccHHHHhccCCCcEEEEccCCc
Q psy6348 164 PQTKNLINAEVLKKCKKGVRVVNVARGG 191 (333)
Q Consensus 164 ~~t~~li~~~~~~~mk~gailIN~aRg~ 191 (333)
. .-...+..|+++..+++++...
T Consensus 213 ~-----~~~~~~~~l~~~G~~v~~~~~~ 235 (271)
T cd05188 213 E-----TLAQALRLLRPGGRIVVVGGTS 235 (271)
T ss_pred H-----HHHHHHHhcccCCEEEEEccCC
Confidence 1 1244556677777777776543
No 346
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=95.76 E-value=0.047 Score=49.71 Aligned_cols=82 Identities=18% Similarity=0.297 Sum_probs=55.2
Q ss_pred cccCCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC-C-----------------H-HH----HHhc--Cccc----
Q psy6348 94 TELYGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV-S-----------------V-ED----AAKL--NIAS---- 143 (333)
Q Consensus 94 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~-----------------~-~~----a~~~--gv~~---- 143 (333)
..|..++|.|||+|.+|..+|+.|...|. ++..+|... + + +. .++. .++.
T Consensus 24 ~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~v~v~~~~ 103 (212)
T PRK08644 24 EKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPFVEIEAHN 103 (212)
T ss_pred HHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCCCEEEEEe
Confidence 45889999999999999999999999998 488888652 1 0 00 0111 1111
Q ss_pred --c---ChhhhccCCCEEEEecCCchhhHhhccHHHHh
Q psy6348 144 --L---GLEDIWPLADYITVHTPLIPQTKNLINAEVLK 176 (333)
Q Consensus 144 --~---~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~ 176 (333)
. +++++++++|+|+.|+- +.+++..++....+
T Consensus 104 ~~i~~~~~~~~~~~~DvVI~a~D-~~~~r~~l~~~~~~ 140 (212)
T PRK08644 104 EKIDEDNIEELFKDCDIVVEAFD-NAETKAMLVETVLE 140 (212)
T ss_pred eecCHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHHHH
Confidence 1 23467888999888864 55666666655444
No 347
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.70 E-value=0.033 Score=55.80 Aligned_cols=109 Identities=17% Similarity=0.201 Sum_probs=66.8
Q ss_pred ccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHH--HHhcCcccc---ChhhhccCCCEEEEecCCchhhHh-
Q psy6348 95 ELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVED--AAKLNIASL---GLEDIWPLADYITVHTPLIPQTKN- 168 (333)
Q Consensus 95 ~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~--a~~~gv~~~---~l~ell~~aDvV~l~~P~t~~t~~- 168 (333)
++.++++.|+|+|..|.+.++.|+..|++|.++|....... ..+.|+... ...+.++..|+|+. -|.-+....
T Consensus 3 ~~~~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~d~vv~-spgi~~~~~~ 81 (438)
T PRK03806 3 DYQGKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRITPPGLDKLPENVERHTGSLNDEWLLAADLIVA-SPGIALAHPS 81 (438)
T ss_pred ccCCCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCCchhHHHHhcCCEEEeCCCCHHHhcCCCEEEE-CCCCCCCCHH
Confidence 35688999999999999999999999999999997653321 112265442 12245677886655 442221111
Q ss_pred ----------hccH-HHHhc-cCCCcEEEEccCCcccchHhHHhhhhc
Q psy6348 169 ----------LINA-EVLKK-CKKGVRVVNVARGGIVDENALLDSLKC 204 (333)
Q Consensus 169 ----------li~~-~~~~~-mk~gailIN~aRg~~vd~~aL~~aL~~ 204 (333)
++.+ +.+.. ++...+-|--+.|+--...-|...|+.
T Consensus 82 ~~~a~~~g~~v~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~ 129 (438)
T PRK03806 82 LSAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKA 129 (438)
T ss_pred HHHHHHCCCeEEEHHHHHhhhcCCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence 2222 23333 232344455556777777777777764
No 348
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=95.67 E-value=0.059 Score=51.82 Aligned_cols=88 Identities=19% Similarity=0.104 Sum_probs=62.4
Q ss_pred CCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHhcCcccc-Ch-hhhccCCCEEEEecCCchhhHhhccHH
Q psy6348 97 YGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV-SVEDAAKLNIASL-GL-EDIWPLADYITVHTPLIPQTKNLINAE 173 (333)
Q Consensus 97 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~gv~~~-~l-~ell~~aDvV~l~~P~t~~t~~li~~~ 173 (333)
.|.++.|.|.|.+|...++.++..|.+|++.++.. ..+.++++|+..+ +. ++.-...|+++.+.... . .-..
T Consensus 165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~vi~~~~~~~~~~d~~i~~~~~~-~----~~~~ 239 (329)
T TIGR02822 165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAASAGGAYDTPPEPLDAAILFAPAG-G----LVPP 239 (329)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCceeccccccCcccceEEEECCCcH-H----HHHH
Confidence 48899999999999999999999999999988765 4466788887543 21 11123467777665431 1 1245
Q ss_pred HHhccCCCcEEEEccC
Q psy6348 174 VLKKCKKGVRVVNVAR 189 (333)
Q Consensus 174 ~~~~mk~gailIN~aR 189 (333)
.++.++++..++.++.
T Consensus 240 ~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 240 ALEALDRGGVLAVAGI 255 (329)
T ss_pred HHHhhCCCcEEEEEec
Confidence 6677888888887753
No 349
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=95.66 E-value=0.032 Score=51.85 Aligned_cols=90 Identities=22% Similarity=0.288 Sum_probs=60.1
Q ss_pred cccCCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC-CH-------------------H----HHHhc--Ccc--c-
Q psy6348 94 TELYGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV-SV-------------------E----DAAKL--NIA--S- 143 (333)
Q Consensus 94 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~-------------------~----~a~~~--gv~--~- 143 (333)
..|.+++|.|+|+|.+|..+|+.|...|. ++..+|+.. .. + ..++. .++ .
T Consensus 20 ~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~ 99 (240)
T TIGR02355 20 EALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPI 99 (240)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEE
Confidence 45889999999999999999999999887 677777543 11 0 00111 111 1
Q ss_pred ---c---ChhhhccCCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEc
Q psy6348 144 ---L---GLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNV 187 (333)
Q Consensus 144 ---~---~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~ 187 (333)
. +++++++++|+|+.++ .+.+++..+++...+. +.-+|..
T Consensus 100 ~~~i~~~~~~~~~~~~DlVvd~~-D~~~~r~~ln~~~~~~---~ip~v~~ 145 (240)
T TIGR02355 100 NAKLDDAELAALIAEHDIVVDCT-DNVEVRNQLNRQCFAA---KVPLVSG 145 (240)
T ss_pred eccCCHHHHHHHhhcCCEEEEcC-CCHHHHHHHHHHHHHc---CCCEEEE
Confidence 1 2456788999888887 4677888887666543 3335543
No 350
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=95.64 E-value=0.053 Score=54.24 Aligned_cols=88 Identities=22% Similarity=0.113 Sum_probs=56.3
Q ss_pred cCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHHhc--Ccccc--------Ch-hhhccCCCEEEEecCCc
Q psy6348 96 LYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAAKL--NIASL--------GL-EDIWPLADYITVHTPLI 163 (333)
Q Consensus 96 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~--gv~~~--------~l-~ell~~aDvV~l~~P~t 163 (333)
+..+++.|+|+|.+|+.+++.|.+.|.+|+++|..+.. +...+. ++... .| +.-+.++|.|+++++..
T Consensus 229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~~ 308 (453)
T PRK09496 229 KPVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTNDD 308 (453)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCCc
Confidence 34689999999999999999999999999999886532 222222 33221 12 22357899999888754
Q ss_pred hhhHhhccHHHHhccCCCcEEE
Q psy6348 164 PQTKNLINAEVLKKCKKGVRVV 185 (333)
Q Consensus 164 ~~t~~li~~~~~~~mk~gailI 185 (333)
. .+++-......+.+..+++
T Consensus 309 ~--~n~~~~~~~~~~~~~~ii~ 328 (453)
T PRK09496 309 E--ANILSSLLAKRLGAKKVIA 328 (453)
T ss_pred H--HHHHHHHHHHHhCCCeEEE
Confidence 3 3333333333344433333
No 351
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=95.55 E-value=0.052 Score=50.76 Aligned_cols=46 Identities=28% Similarity=0.366 Sum_probs=37.2
Q ss_pred CCCEEEEEecChHHHHHHHHHhhCCCE-EEEEcCCC-CHHHHHhcCcc
Q psy6348 97 YGKTLAVLGLGRIGREVALRMQAFGMK-VIGFDPMV-SVEDAAKLNIA 142 (333)
Q Consensus 97 ~gktvGIIGlG~IG~~vA~~l~~~G~~-V~~~d~~~-~~~~a~~~gv~ 142 (333)
.|+++.|+|.|.+|...++.++.+|.+ |++.++.. ..+.++++|+.
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~ 167 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGAT 167 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCc
Confidence 688999999999999999999999996 88887654 33455666653
No 352
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=95.52 E-value=0.035 Score=57.97 Aligned_cols=68 Identities=22% Similarity=0.325 Sum_probs=49.1
Q ss_pred ccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHH--HhcCc--cccC---hhhhccCCCEEEEecCC
Q psy6348 95 ELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDA--AKLNI--ASLG---LEDIWPLADYITVHTPL 162 (333)
Q Consensus 95 ~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a--~~~gv--~~~~---l~ell~~aDvV~l~~P~ 162 (333)
....|||||||-|..|+.+++.++.+|++|+++|+....... .+.-+ .+.+ +.++.+++|+|+.....
T Consensus 19 ~~~~k~IgIIGgGqlg~mla~aA~~lG~~Vi~ld~~~~apa~~~AD~~~v~~~~D~~~l~~~a~~~dvIt~e~e~ 93 (577)
T PLN02948 19 GVSETVVGVLGGGQLGRMLCQAASQMGIKVKVLDPLEDCPASSVAARHVVGSFDDRAAVREFAKRCDVLTVEIEH 93 (577)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCceeeeCCCCCHHHHHHHHHHCCEEEEecCC
Confidence 467899999999999999999999999999999987632111 11111 1223 55667889999876543
No 353
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=95.49 E-value=0.018 Score=45.57 Aligned_cols=86 Identities=16% Similarity=0.250 Sum_probs=49.8
Q ss_pred CEEEEEecChHHHHHHHHH-hhCCCEE-EEEcCCCCHHHHHhcCcccc-ChhhhccC--CCEEEEecCCchhhHhhccHH
Q psy6348 99 KTLAVLGLGRIGREVALRM-QAFGMKV-IGFDPMVSVEDAAKLNIASL-GLEDIWPL--ADYITVHTPLIPQTKNLINAE 173 (333)
Q Consensus 99 ktvGIIGlG~IG~~vA~~l-~~~G~~V-~~~d~~~~~~~a~~~gv~~~-~l~ell~~--aDvV~l~~P~t~~t~~li~~~ 173 (333)
.++.|+|+|+.|++++... ...|+++ .++|..+..--..-.|+... +++++.+. .|+-++++|. +.....+.+-
T Consensus 4 ~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G~~i~gipV~~~~~~l~~~~~i~iaii~VP~-~~a~~~~~~~ 82 (96)
T PF02629_consen 4 TNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIGKEIGGIPVYGSMDELEEFIEIDIAIITVPA-EAAQEVADEL 82 (96)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTTSEETTEEEESSHHHHHHHCTTSEEEEES-H-HHHHHHHHHH
T ss_pred CeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccCcEECCEEeeccHHHhhhhhCCCEEEEEcCH-HHHHHHHHHH
Confidence 4799999999999987433 3456543 34554432211122356655 67776665 9999999993 4444444333
Q ss_pred HHhccCCCcEEEEcc
Q psy6348 174 VLKKCKKGVRVVNVA 188 (333)
Q Consensus 174 ~~~~mk~gailIN~a 188 (333)
.-+.+| .++|++
T Consensus 83 ~~~gIk---~i~nft 94 (96)
T PF02629_consen 83 VEAGIK---GIVNFT 94 (96)
T ss_dssp HHTT-S---EEEEES
T ss_pred HHcCCC---EEEEeC
Confidence 323333 456654
No 354
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=95.43 E-value=0.089 Score=50.16 Aligned_cols=104 Identities=14% Similarity=0.095 Sum_probs=70.6
Q ss_pred CCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccCh-hhhccCCCEEEEecCCchhhH---------
Q psy6348 98 GKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGL-EDIWPLADYITVHTPLIPQTK--------- 167 (333)
Q Consensus 98 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l-~ell~~aDvV~l~~P~t~~t~--------- 167 (333)
|++++|||--.=-..+++.|...|++|..|.-....... .|+...++ ++.++++|+|++-+|.+....
T Consensus 1 ~~~~~v~ggd~r~~~~~~~l~~~g~~v~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~i~~~~~~~ 78 (287)
T TIGR02853 1 GIHIAVIGGDARQLELIRKLEELDAKISLIGFDQLEDGF--TGAVKCELLELDLTTLDVVILPVPGTSHDGKVATVFSNE 78 (287)
T ss_pred CcEEEEEcccHHHHHHHHHHHHCCCEEEEEecccccccc--ccceeecchhhhhccCCEEEECCccccCCceEecccccC
Confidence 689999998887788999999999998887642111111 15555554 445899999999999665421
Q ss_pred -hhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCce
Q psy6348 168 -NLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCG 208 (333)
Q Consensus 168 -~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~ 208 (333)
-.++++.++.|+++++ +-++ ++..++.++.++..+.
T Consensus 79 ~~~l~~~~l~~~~~~~~-~~~G----~~~~~l~~~a~~~gi~ 115 (287)
T TIGR02853 79 KVVLTPELLESTKGHCT-IYVG----ISNPYLEQLAADAGVK 115 (287)
T ss_pred CccccHHHHHhcCCCCE-EEEe----cCCHHHHHHHHHCCCe
Confidence 1246788999997654 3333 3445555566666664
No 355
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=95.43 E-value=0.19 Score=49.10 Aligned_cols=100 Identities=18% Similarity=0.106 Sum_probs=67.0
Q ss_pred hhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCcccc-CCCEEEEEecC-------hHH
Q psy6348 39 TAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTEL-YGKTLAVLGLG-------RIG 110 (333)
Q Consensus 39 ~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l-~gktvGIIGlG-------~IG 110 (333)
+.+...+|+|+|.... ..++- +++=++.+.++ .| .+ .|+||+|++.| ++.
T Consensus 131 ~~a~~s~vPVINa~~~-~HPtQ--aLaDl~Ti~e~------------------~g-~~~~g~ki~i~~~gd~~~~~~~v~ 188 (335)
T PRK04523 131 SFAKYSTVPVINMETI-THPCQ--ELAHALALQEH------------------FG-TTLRGKKYVLTWTYHPKPLNTAVA 188 (335)
T ss_pred HHHHhCCCCEEECCCC-CChHH--HHHHHHHHHHH------------------hC-CccCCCEEEEEEeccCcccccHHH
Confidence 3455678999999766 55543 33334443332 12 25 68999887643 788
Q ss_pred HHHHHHHhhCCCEEEEEcC-C---CCHHH-------HHhcCc--cc-cChhhhccCCCEEEEec
Q psy6348 111 REVALRMQAFGMKVIGFDP-M---VSVED-------AAKLNI--AS-LGLEDIWPLADYITVHT 160 (333)
Q Consensus 111 ~~vA~~l~~~G~~V~~~d~-~---~~~~~-------a~~~gv--~~-~~l~ell~~aDvV~l~~ 160 (333)
.+++..+..+|++|....| . +..+. +++.|. .. .++++.++++|+|..-.
T Consensus 189 ~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvy~~~ 252 (335)
T PRK04523 189 NSALLIATRLGMDVTLLCPTPDYILDERYMDWAEQNAAESGGSLTVSHDIDSAYAGADVVYAKS 252 (335)
T ss_pred HHHHHHHHHcCCEEEEECCchhhCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEece
Confidence 8999999999999999998 2 23221 233453 32 37899999999998744
No 356
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=95.42 E-value=0.026 Score=55.54 Aligned_cols=81 Identities=23% Similarity=0.289 Sum_probs=50.3
Q ss_pred EEEEecChHHHHHHHHHhhCC-C-EEEEEcCCCCH-HHHHh--c--Cccc--------cChhhhccCCCEEEEecCCchh
Q psy6348 101 LAVLGLGRIGREVALRMQAFG-M-KVIGFDPMVSV-EDAAK--L--NIAS--------LGLEDIWPLADYITVHTPLIPQ 165 (333)
Q Consensus 101 vGIIGlG~IG~~vA~~l~~~G-~-~V~~~d~~~~~-~~a~~--~--gv~~--------~~l~ell~~aDvV~l~~P~t~~ 165 (333)
|+|+|.|.+|+.+++.|...+ . +|++.|++... +...+ . .++. .+++++++++|+|+.|+|..
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~-- 78 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPF-- 78 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGG--
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccc--
Confidence 689999999999999998765 4 89999997633 22211 1 2221 13678899999999999843
Q ss_pred hHhhccHHH-HhccCCCcEEEEc
Q psy6348 166 TKNLINAEV-LKKCKKGVRVVNV 187 (333)
Q Consensus 166 t~~li~~~~-~~~mk~gailIN~ 187 (333)
.+... -..++.|.-.||+
T Consensus 79 ----~~~~v~~~~i~~g~~yvD~ 97 (386)
T PF03435_consen 79 ----FGEPVARACIEAGVHYVDT 97 (386)
T ss_dssp ----GHHHHHHHHHHHT-EEEES
T ss_pred ----hhHHHHHHHHHhCCCeecc
Confidence 11121 1224556667773
No 357
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=95.41 E-value=0.023 Score=48.92 Aligned_cols=93 Identities=17% Similarity=0.249 Sum_probs=60.4
Q ss_pred cCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhcc---H
Q psy6348 96 LYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLIN---A 172 (333)
Q Consensus 96 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~---~ 172 (333)
..|++|++||+= ++++++++..+.++.++|..+........++.....++++++||+|++.-. -++| .
T Consensus 9 ~~~~~V~~VG~f---~P~~~~l~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~l~~aD~viiTGs------TlvN~Ti~ 79 (147)
T PF04016_consen 9 GPGDKVGMVGYF---QPLVEKLKERGAEVRVFDLNPDNIGEEPGDVPDEDAEEILPWADVVIITGS------TLVNGTID 79 (147)
T ss_dssp TTTSEEEEES-----HCCHHHHCCCCSEEEEEESSGGG--SSCT-EEGGGHHHHGGG-SEEEEECH------HCCTTTHH
T ss_pred cCCCEEEEEcCc---HHHHHHHhcCCCCEEEEECCCCCCCCCCCcCCHHHHHHHHccCCEEEEEee------eeecCCHH
Confidence 468999999961 247888888899999999976332222223333467899999999998642 2232 5
Q ss_pred HHHhccCCCcEEEEccCCcccchHh
Q psy6348 173 EVLKKCKKGVRVVNVARGGIVDENA 197 (333)
Q Consensus 173 ~~~~~mk~gailIN~aRg~~vd~~a 197 (333)
+.+++.+++..++=.+-....-.+.
T Consensus 80 ~iL~~~~~~~~vil~GpS~~~~P~~ 104 (147)
T PF04016_consen 80 DILELARNAREVILYGPSAPLHPEA 104 (147)
T ss_dssp HHHHHTTTSSEEEEESCCGGS-GGG
T ss_pred HHHHhCccCCeEEEEecCchhhHHH
Confidence 5777788788888776655444433
No 358
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=95.34 E-value=0.044 Score=52.61 Aligned_cols=86 Identities=26% Similarity=0.299 Sum_probs=57.7
Q ss_pred EEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC------------CHHH----------H----Hhc--Cccc--c----
Q psy6348 100 TLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV------------SVED----------A----AKL--NIAS--L---- 144 (333)
Q Consensus 100 tvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~------------~~~~----------a----~~~--gv~~--~---- 144 (333)
+|.|||.|.+|..+|+.|...|. ++..+|... ..+. + ++. +++. .
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~Ve~sNL~RQ~L~~~~D~~iGk~Ka~aaa~~L~~iNP~v~v~~~~~~I 80 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAERLKEIFPSIDATGIVLSI 80 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEeccccCCcccccccchhhcCccHHHHHHHHHHHHCCCcEEEEeeeec
Confidence 58999999999999999999998 577766321 0000 0 111 1111 0
Q ss_pred --------------------ChhhhccCCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccC
Q psy6348 145 --------------------GLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVAR 189 (333)
Q Consensus 145 --------------------~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aR 189 (333)
.++++++++|+|+.++ ++-++|.+++.--... +..+|+.+.
T Consensus 81 pmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~d~t-Dn~esR~L~~~~~~~~---~k~~I~aal 141 (307)
T cd01486 81 PMPGHPISESEVPSTLKDVKRLEELIKDHDVIFLLT-DSRESRWLPTLLSAAK---NKLVINAAL 141 (307)
T ss_pred cccccccccccccccccCHHHHHHHHhhCCEEEECC-CCHHHHHHHHHHHHHh---CCcEEEEEe
Confidence 2468899999999998 5778888887665543 336777654
No 359
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=95.32 E-value=0.1 Score=52.18 Aligned_cols=107 Identities=20% Similarity=0.167 Sum_probs=68.1
Q ss_pred EEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH--HH----HH-hcCcccc--ChhhhccCCCEEEEec--C-CchhhH
Q psy6348 100 TLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV--ED----AA-KLNIASL--GLEDIWPLADYITVHT--P-LIPQTK 167 (333)
Q Consensus 100 tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~--~~----a~-~~gv~~~--~l~ell~~aDvV~l~~--P-~t~~t~ 167 (333)
++.|||+|.+|.++|+.|+..|++|.++|..... .. .+ ..|++.. .-.+.+.++|+|+..- | .+++..
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~~g~~~~~~~~~d~vv~sp~i~~~~p~~~ 80 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEELEPSMGQLRLNEGSVLHTGLHLEDLNNADLVVKSPGIPPDHPLVQ 80 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCCccchhHHHHHhhccCcEEEecCchHHhccCCEEEECCCCCCCCHHHH
Confidence 4789999999999999999999999999975532 11 12 2466543 1245567899887753 2 223221
Q ss_pred -------hhccHHH-H-hccCCCcEEEEccCCcccchHhHHhhhhcCC
Q psy6348 168 -------NLINAEV-L-KKCKKGVRVVNVARGGIVDENALLDSLKCGH 206 (333)
Q Consensus 168 -------~li~~~~-~-~~mk~gailIN~aRg~~vd~~aL~~aL~~g~ 206 (333)
.++.+.+ + ..++...+-|.-+.|+--...-+...|+...
T Consensus 81 ~a~~~~i~i~~~~e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g 128 (433)
T TIGR01087 81 AAAKRGIPVVGDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKAAG 128 (433)
T ss_pred HHHHCCCcEEEHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHhcC
Confidence 1233332 2 3344345556667788777777777777543
No 360
>KOG2711|consensus
Probab=95.31 E-value=0.03 Score=54.29 Aligned_cols=164 Identities=20% Similarity=0.163 Sum_probs=95.2
Q ss_pred ccCCCEEEEEecChHHHHHHHHHhh-------CCCEE--EEEcCCCCH--HHHH------hc------Ccc-------cc
Q psy6348 95 ELYGKTLAVLGLGRIGREVALRMQA-------FGMKV--IGFDPMVSV--EDAA------KL------NIA-------SL 144 (333)
Q Consensus 95 ~l~gktvGIIGlG~IG~~vA~~l~~-------~G~~V--~~~d~~~~~--~~a~------~~------gv~-------~~ 144 (333)
+..-++|+|||.|++|+.+|+.+.. |.-+| +.|+-.... +... +. |++ ..
T Consensus 18 ~~~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~ 97 (372)
T KOG2711|consen 18 ERDPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVP 97 (372)
T ss_pred hcCceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecc
Confidence 3455799999999999999988753 22333 444433211 1110 11 111 12
Q ss_pred ChhhhccCCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchH---------hHHhhhhc--CCceEE--E
Q psy6348 145 GLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDEN---------ALLDSLKC--GHCGGA--A 211 (333)
Q Consensus 145 ~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~---------aL~~aL~~--g~i~ga--a 211 (333)
++.+++.+||+++..+|- .-+.. +-+++..+.|+++..|.+..|=-+.++ -+-++|.- +-+.|+ |
T Consensus 98 dl~ea~~dADilvf~vPh-Qf~~~-ic~~l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI~~~lgI~~~vL~GaNiA 175 (372)
T KOG2711|consen 98 DLVEAAKDADILVFVVPH-QFIPR-ICEQLKGYVKPGATAISLIKGVEVGEEGPGIRLISQIIHRALGIPCSVLMGANIA 175 (372)
T ss_pred hHHHHhccCCEEEEeCCh-hhHHH-HHHHHhcccCCCCeEEEeecceeccCCCCceeehHHHHHHHhCCCceeecCCchH
Confidence 788999999999999994 23333 347788889999999999887333211 12222211 112221 2
Q ss_pred eccCCCCCC-----------CCccchhhcCCCcEEEccCCCCCcHHHHHHHHHHHHHHHHHhHcC
Q psy6348 212 LDVFCEEPP-----------KSEQTFELIKHPKVIVTPHLGASTKEAQIRVAVEIAEQFIALANT 265 (333)
Q Consensus 212 lDV~~~EP~-----------~~~~~~~L~~~pnvi~TPHi~~~t~ea~~~~~~~~~~~i~~~~~~ 265 (333)
..|...++. ....+..|++.|+..++.---..+.|-- -+.+||.++..|
T Consensus 176 ~EVa~~~f~e~tIg~~~~~~~~~~l~~lf~~p~FrV~~~~D~~~VEi~-----GaLKNVvAiaaG 235 (372)
T KOG2711|consen 176 SEVANEKFCETTIGYKDKKEAGILLKKLFRTPYFRVVVVEDADGVEIC-----GALKNVVAIAAG 235 (372)
T ss_pred HHHHhccccceeEeccchhhcchHHHHHhCCCceEEEEeccchHhHHh-----hhHHhHHHHhhh
Confidence 233333321 1112567889999988886555555432 345666665555
No 361
>PRK05086 malate dehydrogenase; Provisional
Probab=95.26 E-value=0.11 Score=50.01 Aligned_cols=93 Identities=18% Similarity=0.219 Sum_probs=56.8
Q ss_pred CEEEEEec-ChHHHHHHHHHh---hCCCEEEEEcCCCCHH----HHHhcC----cc---ccChhhhccCCCEEEEecCCc
Q psy6348 99 KTLAVLGL-GRIGREVALRMQ---AFGMKVIGFDPMVSVE----DAAKLN----IA---SLGLEDIWPLADYITVHTPLI 163 (333)
Q Consensus 99 ktvGIIGl-G~IG~~vA~~l~---~~G~~V~~~d~~~~~~----~a~~~g----v~---~~~l~ell~~aDvV~l~~P~t 163 (333)
++++|||. |.||+.+|..+. ..+.++..+|+..... ...+.+ +. ..++.+.++++|+|+++.-..
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG~~ 80 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAGVA 80 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCCCC
Confidence 58999999 999999998773 3556889999754220 111111 11 124457889999999997531
Q ss_pred hh---hH-hhc------cHHH---HhccCCCcEEEEccCCc
Q psy6348 164 PQ---TK-NLI------NAEV---LKKCKKGVRVVNVARGG 191 (333)
Q Consensus 164 ~~---t~-~li------~~~~---~~~mk~gailIN~aRg~ 191 (333)
.. ++ .++ -++. +....+.+++++++-.-
T Consensus 81 ~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP~ 121 (312)
T PRK05086 81 RKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPV 121 (312)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCch
Confidence 11 11 111 1222 23335788999986654
No 362
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=95.25 E-value=0.17 Score=51.15 Aligned_cols=109 Identities=17% Similarity=0.167 Sum_probs=73.9
Q ss_pred cCCCEEEEEec----ChHHHHHHHHHhhCCC--EEEEEcCCCCHHHHHhcCcccc-ChhhhccCCCEEEEecCCchhhHh
Q psy6348 96 LYGKTLAVLGL----GRIGREVALRMQAFGM--KVIGFDPMVSVEDAAKLNIASL-GLEDIWPLADYITVHTPLIPQTKN 168 (333)
Q Consensus 96 l~gktvGIIGl----G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~a~~~gv~~~-~l~ell~~aDvV~l~~P~t~~t~~ 168 (333)
++-++|.|||. |++|..+.+.++..|+ +|+..+|... +-.|+..+ +++++-...|++++++|. +.+..
T Consensus 5 ~~p~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~----~i~G~~~~~sl~~lp~~~Dlavi~vp~-~~~~~ 79 (447)
T TIGR02717 5 FNPKSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAG----EILGVKAYPSVLEIPDPVDLAVIVVPA-KYVPQ 79 (447)
T ss_pred cCCCEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCC----ccCCccccCCHHHCCCCCCEEEEecCH-HHHHH
Confidence 45689999999 8899999999999887 7988888642 23466544 799988889999999993 44444
Q ss_pred hccHHHHhccCCCcEEE-EccCCc-----ccchHhHHhhhhcCCceEEE
Q psy6348 169 LINAEVLKKCKKGVRVV-NVARGG-----IVDENALLDSLKCGHCGGAA 211 (333)
Q Consensus 169 li~~~~~~~mk~gailI-N~aRg~-----~vd~~aL~~aL~~g~i~gaa 211 (333)
++ ++..+ ..-..++| .-+-++ ...+++|.+..+++.++-.+
T Consensus 80 ~l-~e~~~-~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~girvlG 126 (447)
T TIGR02717 80 VV-EECGE-KGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMRLLG 126 (447)
T ss_pred HH-HHHHh-cCCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCEEEe
Confidence 44 33332 33334433 322222 23467788888887766333
No 363
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=95.23 E-value=0.11 Score=45.85 Aligned_cols=76 Identities=17% Similarity=0.262 Sum_probs=51.1
Q ss_pred EEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC-C-----------------HH-----HHHhc--Cccc------c---
Q psy6348 100 TLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV-S-----------------VE-----DAAKL--NIAS------L--- 144 (333)
Q Consensus 100 tvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~-----------------~~-----~a~~~--gv~~------~--- 144 (333)
+|+|||+|.+|..+|+.|...|. ++..+|... + +. ..++. .++. .
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~~ 80 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAINIKIDEN 80 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecChh
Confidence 58999999999999999999998 588888653 1 00 00111 1111 0
Q ss_pred ChhhhccCCCEEEEecCCchhhHhhccHHHHh
Q psy6348 145 GLEDIWPLADYITVHTPLIPQTKNLINAEVLK 176 (333)
Q Consensus 145 ~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~ 176 (333)
+++++++++|+|+.++ .+.+++..+.....+
T Consensus 81 ~~~~~l~~~DlVi~~~-d~~~~r~~i~~~~~~ 111 (174)
T cd01487 81 NLEGLFGDCDIVVEAF-DNAETKAMLAESLLG 111 (174)
T ss_pred hHHHHhcCCCEEEECC-CCHHHHHHHHHHHHH
Confidence 2356788899888884 467777766665554
No 364
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.22 E-value=0.044 Score=54.68 Aligned_cols=103 Identities=16% Similarity=0.072 Sum_probs=63.8
Q ss_pred EEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhc--cCCCEEEEe--cC-Cchhh---Hhhcc
Q psy6348 100 TLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIW--PLADYITVH--TP-LIPQT---KNLIN 171 (333)
Q Consensus 100 tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell--~~aDvV~l~--~P-~t~~t---~~li~ 171 (333)
++.|+|+|..|.++|+.|+ .|.+|.++|.........+.|+...+ ++.+ .++|+|+.. +| .++.. +.+++
T Consensus 2 ~v~v~G~G~sG~a~a~~L~-~G~~V~~~D~~~~~~~~~~~gi~~~~-~~~~~~~~~d~vv~sp~i~~~~~~~~~a~~i~~ 79 (401)
T PRK03815 2 KISLFGYGKTTKALAKFLK-KFGGVDIFDDKFTESHKDEEGNLLLP-SNDFDPNKSDLEIPSPGIPPSHPLIQKAKNLIS 79 (401)
T ss_pred eEEEEeECHHHHHHHHHHh-CCCeEEEEcCCCCccchhhcCCEEec-HHHcCcCCCCEEEECCCCCCCCHHHHHHHHHhh
Confidence 6899999999999999999 99999999955422222334665432 2233 468987665 33 22221 22343
Q ss_pred HHHH-hccCCCcEEEEccCCcccchHhHHhhhhc
Q psy6348 172 AEVL-KKCKKGVRVVNVARGGIVDENALLDSLKC 204 (333)
Q Consensus 172 ~~~~-~~mk~gailIN~aRg~~vd~~aL~~aL~~ 204 (333)
+-++ ..+.+..+-|--+-|+--...-+...|+.
T Consensus 80 ~~e~~~~~~~~~i~ITGT~GKTTTt~ml~~iL~~ 113 (401)
T PRK03815 80 EYDYFYDVMPFSIWISGTNGKTTTTQMTTHLLED 113 (401)
T ss_pred HHHHHHHhcCCEEEEECCCcHHHHHHHHHHHHHH
Confidence 3322 22223355555567777777777777764
No 365
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=95.20 E-value=0.04 Score=49.89 Aligned_cols=63 Identities=22% Similarity=0.209 Sum_probs=49.8
Q ss_pred EEEEec-ChHHHHHHHHHhhCCCEEEEEcCCCCHH---HHHhcCcccc--------ChhhhccCCCEEEEecCCc
Q psy6348 101 LAVLGL-GRIGREVALRMQAFGMKVIGFDPMVSVE---DAAKLNIASL--------GLEDIWPLADYITVHTPLI 163 (333)
Q Consensus 101 vGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~~~---~a~~~gv~~~--------~l~ell~~aDvV~l~~P~t 163 (333)
|.|+|. |.+|+.+++.|...+++|.+.-|..+.. ..+..|++.+ ++.++++.+|.|++++|..
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~ 75 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPPS 75 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSCS
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCcc
Confidence 678996 9999999999999999999988876432 2345676532 4667899999999999943
No 366
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.17 E-value=0.058 Score=54.64 Aligned_cols=107 Identities=20% Similarity=0.257 Sum_probs=63.5
Q ss_pred CCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHHhc-Ccccc--ChhhhccCCCEEEEec--C-CchhhH--
Q psy6348 97 YGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAAKL-NIASL--GLEDIWPLADYITVHT--P-LIPQTK-- 167 (333)
Q Consensus 97 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~-gv~~~--~l~ell~~aDvV~l~~--P-~t~~t~-- 167 (333)
.||+++|+|+|.-|.+.|+.|+. |.+|+++|..... ....+. ..... ...+.+.++|+|+..= | .++...
T Consensus 5 ~~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vV~SPgI~~~~p~~~~a 83 (454)
T PRK01368 5 TKQKIGVFGLGKTGISVYEELQN-KYDVIVYDDLKANRDIFEELYSKNAIAALSDSRWQNLDKIVLSPGIPLTHEIVKIA 83 (454)
T ss_pred CCCEEEEEeecHHHHHHHHHHhC-CCEEEEECCCCCchHHHHhhhcCceeccCChhHhhCCCEEEECCCCCCCCHHHHHH
Confidence 47899999999999999999995 9999999954322 111111 11111 1234567899887752 2 222111
Q ss_pred -----hhccHHHH--hccCC-CcEEEEccCCcccchHhHHhhhhc
Q psy6348 168 -----NLINAEVL--KKCKK-GVRVVNVARGGIVDENALLDSLKC 204 (333)
Q Consensus 168 -----~li~~~~~--~~mk~-gailIN~aRg~~vd~~aL~~aL~~ 204 (333)
.++++-++ ..+++ ..+=|--+.|+--...-+...|+.
T Consensus 84 ~~~gi~v~~e~el~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~ 128 (454)
T PRK01368 84 KNFNIPITSDIDLLFEKSKNLKFIAITGTNGKSTTTALISHILNS 128 (454)
T ss_pred HHCCCceecHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHh
Confidence 13333333 33333 234444456777777777777775
No 367
>PRK10206 putative oxidoreductase; Provisional
Probab=95.13 E-value=0.054 Score=52.79 Aligned_cols=65 Identities=17% Similarity=0.132 Sum_probs=43.6
Q ss_pred EEEEEecChHHHH-HHHHHhh--CCCEEEE-EcCCCCH-HHHHhcC-ccc-cChhhhcc--CCCEEEEecCCch
Q psy6348 100 TLAVLGLGRIGRE-VALRMQA--FGMKVIG-FDPMVSV-EDAAKLN-IAS-LGLEDIWP--LADYITVHTPLIP 164 (333)
Q Consensus 100 tvGIIGlG~IG~~-vA~~l~~--~G~~V~~-~d~~~~~-~~a~~~g-v~~-~~l~ell~--~aDvV~l~~P~t~ 164 (333)
++||||+|.+++. .+..+.. -++++.+ +|+.... +.+++.+ +.. .++++++. +.|+|++++|...
T Consensus 3 rvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~~~ 76 (344)
T PRK10206 3 NCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADS 76 (344)
T ss_pred EEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEeCCchH
Confidence 7999999998764 3444422 3678764 7876532 2234444 433 37999996 5799999999544
No 368
>PTZ00325 malate dehydrogenase; Provisional
Probab=95.12 E-value=0.04 Score=53.42 Aligned_cols=67 Identities=24% Similarity=0.223 Sum_probs=46.0
Q ss_pred cCCCEEEEEec-ChHHHHHHHHHhh--CCCEEEEEcCCCCHHHHHhc-----Ccccc---C---hhhhccCCCEEEEecC
Q psy6348 96 LYGKTLAVLGL-GRIGREVALRMQA--FGMKVIGFDPMVSVEDAAKL-----NIASL---G---LEDIWPLADYITVHTP 161 (333)
Q Consensus 96 l~gktvGIIGl-G~IG~~vA~~l~~--~G~~V~~~d~~~~~~~a~~~-----gv~~~---~---l~ell~~aDvV~l~~P 161 (333)
++.+||+|||. |+||+.+|..+.. ...++..+|.......+.++ ..... + ..+.++.||+|+++.-
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVitaG 85 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICAG 85 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECCC
Confidence 56779999999 9999999998884 44689999983322212110 11111 1 1578999999998865
Q ss_pred C
Q psy6348 162 L 162 (333)
Q Consensus 162 ~ 162 (333)
.
T Consensus 86 ~ 86 (321)
T PTZ00325 86 V 86 (321)
T ss_pred C
Confidence 3
No 369
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=95.11 E-value=0.08 Score=47.61 Aligned_cols=38 Identities=21% Similarity=0.359 Sum_probs=33.9
Q ss_pred cccCCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC
Q psy6348 94 TELYGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV 131 (333)
Q Consensus 94 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~ 131 (333)
..|.+++|.|+|+|.+|..+++.|...|. ++..+|+..
T Consensus 17 ~~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ 55 (197)
T cd01492 17 KRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT 55 (197)
T ss_pred HHHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 56899999999999999999999999998 588888653
No 370
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=95.10 E-value=0.056 Score=51.48 Aligned_cols=67 Identities=24% Similarity=0.276 Sum_probs=46.0
Q ss_pred ccCCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCCCHH--HHHhc----Cc---cccC---hhhhccCCCEEEEecC
Q psy6348 95 ELYGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMVSVE--DAAKL----NI---ASLG---LEDIWPLADYITVHTP 161 (333)
Q Consensus 95 ~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~~--~a~~~----gv---~~~~---l~ell~~aDvV~l~~P 161 (333)
++.||++.|+|.|-.|++++-.|...|+ +|++++|..... .+... +. ...+ +++.+..+|+|+.++|
T Consensus 124 ~~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~divINaTp 203 (283)
T PRK14027 124 NAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATP 203 (283)
T ss_pred CcCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcCEEEEcCC
Confidence 5678999999999999999999999997 789999965321 11111 11 1112 2334566777777777
No 371
>PLN02602 lactate dehydrogenase
Probab=95.09 E-value=0.059 Score=52.89 Aligned_cols=90 Identities=19% Similarity=0.256 Sum_probs=57.1
Q ss_pred CEEEEEecChHHHHHHHHHhhCCC--EEEEEcCCCCHHHHHhcC----------cccc---ChhhhccCCCEEEEecCCc
Q psy6348 99 KTLAVLGLGRIGREVALRMQAFGM--KVIGFDPMVSVEDAAKLN----------IASL---GLEDIWPLADYITVHTPLI 163 (333)
Q Consensus 99 ktvGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~~~~~a~~~g----------v~~~---~l~ell~~aDvV~l~~P~t 163 (333)
+||+|||.|.||..+|-.+...|. ++..+|..........+. .... +. +.+++||+|+++.-..
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy-~~~~daDiVVitAG~~ 116 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDY-AVTAGSDLCIVTAGAR 116 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCH-HHhCCCCEEEECCCCC
Confidence 699999999999999998876665 799999865432222111 1111 22 4589999999985321
Q ss_pred --h-hhH-hhc--cH-------HHHhccCCCcEEEEccC
Q psy6348 164 --P-QTK-NLI--NA-------EVLKKCKKGVRVVNVAR 189 (333)
Q Consensus 164 --~-~t~-~li--~~-------~~~~~mk~gailIN~aR 189 (333)
+ .++ .++ +. +.+....+++++|+++-
T Consensus 117 ~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtN 155 (350)
T PLN02602 117 QIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSN 155 (350)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 1 223 111 11 12334567889999974
No 372
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=95.06 E-value=0.097 Score=50.85 Aligned_cols=30 Identities=33% Similarity=0.655 Sum_probs=24.8
Q ss_pred EEEEEecChHHHHHHHHHhhCC----CEEEEEcC
Q psy6348 100 TLAVLGLGRIGREVALRMQAFG----MKVIGFDP 129 (333)
Q Consensus 100 tvGIIGlG~IG~~vA~~l~~~G----~~V~~~d~ 129 (333)
+|||+|+|+||+.+.+.+...+ ++|.....
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaInd 34 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGERLGIEVVALNE 34 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEec
Confidence 5899999999999999887653 78877654
No 373
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=95.05 E-value=0.4 Score=45.97 Aligned_cols=143 Identities=19% Similarity=0.210 Sum_probs=90.9
Q ss_pred cceEEEcccCcCccChhhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCCCEEE
Q psy6348 23 LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLA 102 (333)
Q Consensus 23 Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~gktvG 102 (333)
+-.|...+-+-..+. +-|.--+|+|.|.-.--..++- +++=++.+.. ..|. ++|+|+.
T Consensus 100 ~D~I~~R~~~~~~ve-~lA~~s~VPViNgLtD~~HP~Q--~LADl~Ti~E------------------~~g~-l~g~k~a 157 (310)
T COG0078 100 VDAIMIRGFSHETLE-ELAKYSGVPVINGLTDEFHPCQ--ALADLMTIKE------------------HFGS-LKGLKLA 157 (310)
T ss_pred hheEEEecccHHHHH-HHHHhCCCceEcccccccCcHH--HHHHHHHHHH------------------hcCc-ccCcEEE
Confidence 444544444433332 3466789999998653333433 2222332222 1233 8999999
Q ss_pred EEecC-hHHHHHHHHHhhCCCEEEEEcCCC---CH---HH----HHhcC--cccc-ChhhhccCCCEEEEecCCch--hh
Q psy6348 103 VLGLG-RIGREVALRMQAFGMKVIGFDPMV---SV---ED----AAKLN--IASL-GLEDIWPLADYITVHTPLIP--QT 166 (333)
Q Consensus 103 IIGlG-~IG~~vA~~l~~~G~~V~~~d~~~---~~---~~----a~~~g--v~~~-~l~ell~~aDvV~l~~P~t~--~t 166 (333)
.+|=| +|+.++......+||+|....|.. .. +. +++.| +... ++++.++.||+|..-+...- +.
T Consensus 158 ~vGDgNNv~nSl~~~~a~~G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g~~i~~t~d~~eAv~gADvvyTDvWvSMGee~ 237 (310)
T COG0078 158 YVGDGNNVANSLLLAAAKLGMDVRIATPKGYEPDPEVVEKAKENAKESGGKITLTEDPEEAVKGADVVYTDVWVSMGEEA 237 (310)
T ss_pred EEcCcchHHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHhcCCeEEEecCHHHHhCCCCEEEecCcccCcchh
Confidence 99976 688888888899999999877654 11 12 23334 3443 89999999999987655322 11
Q ss_pred H-----------hhccHHHHhccCCCcEEEEc
Q psy6348 167 K-----------NLINAEVLKKCKKGVRVVNV 187 (333)
Q Consensus 167 ~-----------~li~~~~~~~mk~gailIN~ 187 (333)
. -.++.+.++.-+++++|..|
T Consensus 238 e~~~~~~~~~~~yQVn~~lm~~a~~~~ifmHC 269 (310)
T COG0078 238 EAEERRIAFLPPYQVNEELMALAGPDAIFMHC 269 (310)
T ss_pred hhHHHHHhhCCCceeCHHHHhhcCCCeEEEeC
Confidence 1 23567777777888888888
No 374
>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]
Probab=95.04 E-value=0.073 Score=51.08 Aligned_cols=94 Identities=21% Similarity=0.244 Sum_probs=68.9
Q ss_pred cccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHhcCcccc-------------------------Chh
Q psy6348 94 TELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV-SVEDAAKLNIASL-------------------------GLE 147 (333)
Q Consensus 94 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~gv~~~-------------------------~l~ 147 (333)
-...+.++-++|+|-+|...+...+..|.-|..+|-.+ ..+..+..|.++. -+.
T Consensus 160 gtv~pA~vlv~G~Gvagl~aiata~~lG~iVt~rdlrm~~Keqv~s~Ga~f~~~~~ee~~gGYAk~ms~~~~~~q~~~~a 239 (356)
T COG3288 160 GTVSPAKVLVIGAGVAGLAAIATAVRLGAIVTARDLRMFKKEQVESLGAKFLAVEDEESAGGYAKEMSEEFIAKQAELVA 239 (356)
T ss_pred ccccchhhhhhhHHHHHHHHHHHHhhcceEEehhhhhhHHhhhhhhcccccccccccccCCCccccCCHHHHHHHHHHHH
Confidence 34566788999999999999999999999999998665 2233332332111 134
Q ss_pred hhccCCCEEEEe--cCCchhhHhhccHHHHhccCCCcEEEEcc
Q psy6348 148 DIWPLADYITVH--TPLIPQTKNLINAEVLKKCKKGVRVVNVA 188 (333)
Q Consensus 148 ell~~aDvV~l~--~P~t~~t~~li~~~~~~~mk~gailIN~a 188 (333)
+..++.|+|+.. +|..+. -.++.++..+.||||+++|+.+
T Consensus 240 ~~~~~~DivITTAlIPGrpA-P~Lvt~~mv~sMkpGSViVDlA 281 (356)
T COG3288 240 EQAKEVDIVITTALIPGRPA-PKLVTAEMVASMKPGSVIVDLA 281 (356)
T ss_pred HHhcCCCEEEEecccCCCCC-chhhHHHHHHhcCCCcEEEEeh
Confidence 567899999875 454433 4578899999999999999984
No 375
>KOG0022|consensus
Probab=95.03 E-value=0.19 Score=48.44 Aligned_cols=46 Identities=37% Similarity=0.567 Sum_probs=40.9
Q ss_pred CCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC-CHHHHHhcCcc
Q psy6348 97 YGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV-SVEDAAKLNIA 142 (333)
Q Consensus 97 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~~gv~ 142 (333)
.|.+++|+|+|.+|.+++.-+++.|. ++++.|-.. ..+.++++|++
T Consensus 192 ~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaT 239 (375)
T KOG0022|consen 192 PGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGAT 239 (375)
T ss_pred CCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcc
Confidence 58999999999999999999999998 899999887 44778888875
No 376
>PRK08223 hypothetical protein; Validated
Probab=95.03 E-value=0.087 Score=50.29 Aligned_cols=91 Identities=19% Similarity=0.250 Sum_probs=58.4
Q ss_pred cccCCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC-CH-------------------HHH----HhcC--cc----
Q psy6348 94 TELYGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV-SV-------------------EDA----AKLN--IA---- 142 (333)
Q Consensus 94 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~-------------------~~a----~~~g--v~---- 142 (333)
..|++++|.|||+|.+|..+|..|...|. ++..+|... .. +.+ ++.. ++
T Consensus 23 ~kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~ 102 (287)
T PRK08223 23 QRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAF 102 (287)
T ss_pred HHHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEE
Confidence 45889999999999999999999999998 566666432 11 000 1111 11
Q ss_pred -----ccChhhhccCCCEEEEecCCc-hhhHhhccHHHHhccCCCcEEEEc
Q psy6348 143 -----SLGLEDIWPLADYITVHTPLI-PQTKNLINAEVLKKCKKGVRVVNV 187 (333)
Q Consensus 143 -----~~~l~ell~~aDvV~l~~P~t-~~t~~li~~~~~~~mk~gailIN~ 187 (333)
..+.+++++++|+|+-++..- -+++.++++..... +.-+|..
T Consensus 103 ~~~l~~~n~~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~~---~iP~V~~ 150 (287)
T PRK08223 103 PEGIGKENADAFLDGVDVYVDGLDFFEFDARRLVFAACQQR---GIPALTA 150 (287)
T ss_pred ecccCccCHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHc---CCCEEEE
Confidence 113567788899888666421 26777777665543 3345555
No 377
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=95.01 E-value=0.18 Score=42.38 Aligned_cols=32 Identities=31% Similarity=0.526 Sum_probs=28.8
Q ss_pred EEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC
Q psy6348 100 TLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV 131 (333)
Q Consensus 100 tvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~ 131 (333)
+|.|||+|.+|..+|+.|...|. ++..+|+..
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence 58999999999999999999998 799998753
No 378
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=94.98 E-value=0.16 Score=49.57 Aligned_cols=86 Identities=24% Similarity=0.313 Sum_probs=52.9
Q ss_pred CCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH--HHHHhcCcccc-C------hhhhccCCCEEEEecCCchhhH
Q psy6348 97 YGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV--EDAAKLNIASL-G------LEDIWPLADYITVHTPLIPQTK 167 (333)
Q Consensus 97 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~--~~a~~~gv~~~-~------l~ell~~aDvV~l~~P~t~~t~ 167 (333)
.|++|.|.|.|.+|...++.++.+|.+|++.+..... +.++++|+..+ + +.++....|+++-++.. +.
T Consensus 183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~g~-~~-- 259 (360)
T PLN02586 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTVSA-VH-- 259 (360)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECCCC-HH--
Confidence 5889999999999999999999999999887765422 33355665321 1 11222235666655431 11
Q ss_pred hhccHHHHhccCCCcEEEEc
Q psy6348 168 NLINAEVLKKCKKGVRVVNV 187 (333)
Q Consensus 168 ~li~~~~~~~mk~gailIN~ 187 (333)
.+ .+.++.++++..++.+
T Consensus 260 -~~-~~~~~~l~~~G~iv~v 277 (360)
T PLN02586 260 -AL-GPLLGLLKVNGKLITL 277 (360)
T ss_pred -HH-HHHHHHhcCCcEEEEe
Confidence 11 2244555666666655
No 379
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.97 E-value=0.13 Score=49.89 Aligned_cols=98 Identities=21% Similarity=0.275 Sum_probs=59.6
Q ss_pred CEEEEEec-ChHHHHHHHHHhhCCC-------EEEEEcCCCCH--HHHHhc-----------Cccc-cChhhhccCCCEE
Q psy6348 99 KTLAVLGL-GRIGREVALRMQAFGM-------KVIGFDPMVSV--EDAAKL-----------NIAS-LGLEDIWPLADYI 156 (333)
Q Consensus 99 ktvGIIGl-G~IG~~vA~~l~~~G~-------~V~~~d~~~~~--~~a~~~-----------gv~~-~~l~ell~~aDvV 156 (333)
+||+|||. |.||..+|..+...|. ++..+|..... ..+..+ .+.. .+..+.+++||+|
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDiv 82 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDADWA 82 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCCEE
Confidence 58999999 9999999998876665 79999974322 111111 1111 1345789999999
Q ss_pred EEecCC--ch-hhHh-hc--cH-------HHHhccC-CCcEEEEccCCcccchHhH
Q psy6348 157 TVHTPL--IP-QTKN-LI--NA-------EVLKKCK-KGVRVVNVARGGIVDENAL 198 (333)
Q Consensus 157 ~l~~P~--t~-~t~~-li--~~-------~~~~~mk-~gailIN~aRg~~vd~~aL 198 (333)
+++.-. .+ .|+- ++ +. +.+.... +++++|.++ .++|.-.-
T Consensus 83 vitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t~ 136 (322)
T cd01338 83 LLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVG--NPCNTNAL 136 (322)
T ss_pred EEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEec--CcHHHHHH
Confidence 998643 11 1211 11 11 1222234 588999986 55555543
No 380
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=94.96 E-value=0.051 Score=52.83 Aligned_cols=60 Identities=28% Similarity=0.460 Sum_probs=43.3
Q ss_pred EEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-H-HHHhcCc--cccC---hhhhccCCCEEEEe
Q psy6348 100 TLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-E-DAAKLNI--ASLG---LEDIWPLADYITVH 159 (333)
Q Consensus 100 tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~-~a~~~gv--~~~~---l~ell~~aDvV~l~ 159 (333)
||||||-|..|+.+++.++.+|++|+++|+.... . ...+..+ .+.+ +.++++.||+|+..
T Consensus 1 ~igiiG~gql~~~l~~aa~~lG~~v~~~d~~~~~p~~~~ad~~~~~~~~d~~~i~~~a~~~dvit~e 67 (352)
T TIGR01161 1 TVGILGGGQLGRMLALAARPLGIKVHVLDPDANSPAVQVADHVVLAPFFDPAAIRELAESCDVITFE 67 (352)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEEEECCCCCCChhHhCceeEeCCCCCHHHHHHHHhhCCEEEeC
Confidence 5899999999999999999999999999987522 1 1111111 1123 66678889988653
No 381
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=94.96 E-value=0.076 Score=50.26 Aligned_cols=63 Identities=19% Similarity=0.127 Sum_probs=43.8
Q ss_pred CCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCCCHH--HHHhcCccccChhhh-ccCCCEEEEecCC
Q psy6348 98 GKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMVSVE--DAAKLNIASLGLEDI-WPLADYITVHTPL 162 (333)
Q Consensus 98 gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~~--~a~~~gv~~~~l~el-l~~aDvV~l~~P~ 162 (333)
++++.|+|.|-.+++++..|...|. +|++++|..... .++..+.... +++ ...+|+|+.++|.
T Consensus 122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~~~~~--~~~~~~~~dlvINaTp~ 188 (272)
T PRK12550 122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYGYEWR--PDLGGIEADILVNVTPI 188 (272)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhCCcch--hhcccccCCEEEECCcc
Confidence 5789999999999999999999998 599999976321 2222332211 111 2457888888873
No 382
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=94.93 E-value=0.074 Score=52.51 Aligned_cols=90 Identities=23% Similarity=0.283 Sum_probs=59.1
Q ss_pred ccCCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC-------------------CH-HH----HHhc--Cccc--c-
Q psy6348 95 ELYGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV-------------------SV-ED----AAKL--NIAS--L- 144 (333)
Q Consensus 95 ~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-------------------~~-~~----a~~~--gv~~--~- 144 (333)
.|.+++|.|+|+|.+|+.+|..|...|. ++..+|+.. .+ +. .++. .+.. .
T Consensus 132 ~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~ 211 (376)
T PRK08762 132 RLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQ 211 (376)
T ss_pred HHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEEe
Confidence 5889999999999999999999999998 788888751 11 11 1111 1111 0
Q ss_pred ------ChhhhccCCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEcc
Q psy6348 145 ------GLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVA 188 (333)
Q Consensus 145 ------~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~a 188 (333)
+++++++++|+|+.++= +..++.++++...+ .+.-+|..+
T Consensus 212 ~~~~~~~~~~~~~~~D~Vv~~~d-~~~~r~~ln~~~~~---~~ip~i~~~ 257 (376)
T PRK08762 212 ERVTSDNVEALLQDVDVVVDGAD-NFPTRYLLNDACVK---LGKPLVYGA 257 (376)
T ss_pred ccCChHHHHHHHhCCCEEEECCC-CHHHHHHHHHHHHH---cCCCEEEEE
Confidence 23457788998887763 45666666655443 334466553
No 383
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=94.89 E-value=0.074 Score=51.19 Aligned_cols=63 Identities=14% Similarity=0.147 Sum_probs=43.5
Q ss_pred CEEEEEec-ChHHHHHHHHHhhCCC--EEEEEcCCCCHHHH--Hh---------cC--ccc--cChhhhccCCCEEEEec
Q psy6348 99 KTLAVLGL-GRIGREVALRMQAFGM--KVIGFDPMVSVEDA--AK---------LN--IAS--LGLEDIWPLADYITVHT 160 (333)
Q Consensus 99 ktvGIIGl-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~a--~~---------~g--v~~--~~l~ell~~aDvV~l~~ 160 (333)
++|+|+|. |.+|..+|..+...|. +|+.+|+....+.+ .. .+ ... .+-.+.+++||+|+++.
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~~~l~~aDiViita 80 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDLSDVAGSDIVIITA 80 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCCHHHhCCCCEEEEec
Confidence 48999998 9999999999988776 59999984311111 11 11 111 11134599999999998
Q ss_pred C
Q psy6348 161 P 161 (333)
Q Consensus 161 P 161 (333)
.
T Consensus 81 g 81 (309)
T cd05294 81 G 81 (309)
T ss_pred C
Confidence 5
No 384
>CHL00194 ycf39 Ycf39; Provisional
Probab=94.88 E-value=0.069 Score=50.94 Aligned_cols=63 Identities=16% Similarity=0.144 Sum_probs=46.5
Q ss_pred CEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCCCHH-HHHhcCcccc--------ChhhhccCCCEEEEecC
Q psy6348 99 KTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMVSVE-DAAKLNIASL--------GLEDIWPLADYITVHTP 161 (333)
Q Consensus 99 ktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~~~-~a~~~gv~~~--------~l~ell~~aDvV~l~~P 161 (333)
++|.|.|. |.+|+.+++.|...|++|.+.+|..+.. .....+++.+ ++.++++.+|+|+.+.+
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~ 73 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST 73 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence 37899995 9999999999999999999998865321 1223354322 35677899999887654
No 385
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=94.87 E-value=0.12 Score=49.34 Aligned_cols=45 Identities=33% Similarity=0.468 Sum_probs=36.9
Q ss_pred CCCEEEEEecChHHHHHHHHHhhCCCE-EEEEcCCC-CHHHHHhcCc
Q psy6348 97 YGKTLAVLGLGRIGREVALRMQAFGMK-VIGFDPMV-SVEDAAKLNI 141 (333)
Q Consensus 97 ~gktvGIIGlG~IG~~vA~~l~~~G~~-V~~~d~~~-~~~~a~~~gv 141 (333)
.|.++.|+|.|.+|...++.++.+|.+ |++.++.. ..+.++++|+
T Consensus 163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga 209 (339)
T cd08239 163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGA 209 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCC
Confidence 489999999999999999999999999 99988755 3344555664
No 386
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=94.83 E-value=0.16 Score=53.38 Aligned_cols=128 Identities=16% Similarity=0.165 Sum_probs=81.5
Q ss_pred CCcEEEECC-CCCchHHHHHHHHHHHHHhcCCCccchhhhcCcccccC-CCccccCCCEEEEEecChHHHHHHHHHhhCC
Q psy6348 44 KGVLVLNAP-GGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKL-YTGTELYGKTLAVLGLGRIGREVALRMQAFG 121 (333)
Q Consensus 44 ~gI~V~n~p-~~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~-~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G 121 (333)
.|-.+++-. .-+....||.++-|=|-+.| |+--. +....|.+.+|.|||+|.+|..+|+.|.+.|
T Consensus 295 l~pr~~dL~~~mdP~~la~~avdlnlkLmk-------------WRllP~l~~ekL~~~kVLIvGaGGLGs~VA~~La~~G 361 (664)
T TIGR01381 295 LQPISVDLSKEFDPKRLAERSVDLNLKLMK-------------WRLHPDLQLERYSQLKVLLLGAGTLGCNVARCLIGWG 361 (664)
T ss_pred cCceEechhhhcCHHHHHHHHHHHHHHHHh-------------hhcCChhhHHHHhcCeEEEECCcHHHHHHHHHHHHcC
Confidence 334445443 34556778888877665554 54321 1125688999999999999999999999999
Q ss_pred C-EEEEEcCCC------------CHH-----------HH----Hhc--Ccc------c-------c-------------C
Q psy6348 122 M-KVIGFDPMV------------SVE-----------DA----AKL--NIA------S-------L-------------G 145 (333)
Q Consensus 122 ~-~V~~~d~~~------------~~~-----------~a----~~~--gv~------~-------~-------------~ 145 (333)
. +++.+|... ..+ .+ ++. +++ . + .
T Consensus 362 Vg~ItlVD~D~Ve~SNL~RQ~Lf~~~Dv~~~Gk~KA~aAa~~Lk~InP~v~i~~~~~~Ipm~Gh~i~~~~~~~~~~d~~~ 441 (664)
T TIGR01381 362 VRHITFVDNGKVSYSNPVRQSLSNFEDCLLGGRGKAETAQKALKRIFPSIQATGHRLTVPMPGHPIDEKDVPELEKDIAR 441 (664)
T ss_pred CCeEEEEcCCEECCCccccccccchhhhhhcCCcHHHHHHHHHHHHCCCcEEEEeeeeeccccccCCchhhhhccccHHH
Confidence 8 566665211 001 11 111 111 0 1 2
Q ss_pred hhhhccCCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEcc
Q psy6348 146 LEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVA 188 (333)
Q Consensus 146 l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~a 188 (333)
++++++++|+|+.++- +-++|.+++.--.. .+..+|+.+
T Consensus 442 l~~Li~~~DvV~d~tD-n~esR~L~n~~c~~---~~kplI~aA 480 (664)
T TIGR01381 442 LEQLIKDHDVVFLLLD-SREARWLPTVLCSR---HKKIAISAA 480 (664)
T ss_pred HHHHHhhCCEEEECCC-CHHHHHHHHHHHHH---hCCCEEEEE
Confidence 4568899999999885 77889888766554 344566654
No 387
>PF05222 AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal domain; InterPro: IPR007886 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins, represented in this entry, and to a central glycine-rich region which is part of the NAD(H)-binding site.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1X15_A 2BRU_A 1X14_B 1X13_A 2EEZ_F 2VOE_F 2VHV_B 2VHY_A 2VHX_A 2VHW_A ....
Probab=94.80 E-value=0.26 Score=41.77 Aligned_cols=96 Identities=20% Similarity=0.210 Sum_probs=70.4
Q ss_pred HHHHHHhhCCCEEEEEcCC-----CCHHHHHhcCccccC-hhhhccCCCEEEEecCCchhhHhhccHHHHhccCCCcEEE
Q psy6348 112 EVALRMQAFGMKVIGFDPM-----VSVEDAAKLNIASLG-LEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVV 185 (333)
Q Consensus 112 ~vA~~l~~~G~~V~~~d~~-----~~~~~a~~~gv~~~~-l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailI 185 (333)
..+++|...|++|++=.-. .+.+...+.|.+.++ .++++++||+|+-.-|.+ .+.++.|++|.++|
T Consensus 18 ~~v~~L~~~G~~V~VE~gaG~~a~fsD~~Y~~aGA~I~~~~~ev~~~adiIl~v~~p~--------~~e~~~l~~g~~li 89 (136)
T PF05222_consen 18 EDVKKLVKLGHEVLVESGAGEGAGFSDEEYEEAGAEIVSRAEEVYSDADIILKVKPPS--------EEELALLKPGQTLI 89 (136)
T ss_dssp HHHHHHHHTTSEEEEETTTTGGGTB-HHHHHHTTEEEESSHHHHHTTSSEEEESS-----------GGGGGGS-TTCEEE
T ss_pred HHHHHHHhCCCEEEEECCCCCcCcccHHHHhhCCcEEecCchhhcccCCEEEEECCCC--------HHHHhhcCCCcEEE
Confidence 4567888889999985432 245666778988775 458999999998776532 56778899999999
Q ss_pred EccCCcccchHhHHhhhhcCCceEEEeccCCC
Q psy6348 186 NVARGGIVDENALLDSLKCGHCGGAALDVFCE 217 (333)
Q Consensus 186 N~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~ 217 (333)
-...-. ....+++.|.+.++...++|....
T Consensus 90 ~~~~~~--~~~~~~~~l~~~~it~~a~E~ipr 119 (136)
T PF05222_consen 90 GFLHPA--QNKELLEALAKKGITAFALELIPR 119 (136)
T ss_dssp EE--GG--GHHHHHHHHHHCTEEEEEGGGSBS
T ss_pred Eeeccc--cCHHHHHHHHHCCCEEEEhhhCcC
Confidence 876555 588899999999999899887554
No 388
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=94.75 E-value=0.079 Score=57.46 Aligned_cols=107 Identities=15% Similarity=0.101 Sum_probs=69.2
Q ss_pred CEEEEEecChHHHHH-HHHHhhCCCEEEEEcCCCCH--HHHHhcCcccc--ChhhhccCCCEEEEec--C-CchhhH---
Q psy6348 99 KTLAVLGLGRIGREV-ALRMQAFGMKVIGFDPMVSV--EDAAKLNIASL--GLEDIWPLADYITVHT--P-LIPQTK--- 167 (333)
Q Consensus 99 ktvGIIGlG~IG~~v-A~~l~~~G~~V~~~d~~~~~--~~a~~~gv~~~--~l~ell~~aDvV~l~~--P-~t~~t~--- 167 (333)
+++.|+|+|..|.+. |+.|+..|++|.++|..... +..++.|+... ...+.+.++|+|+..- | .++...
T Consensus 5 ~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~~~~~~L~~~gi~~~~g~~~~~~~~~d~vV~SpgI~~~~p~~~~a~ 84 (809)
T PRK14573 5 LFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEGKTVEKLKAKGARFFLGHQEEHVPEDAVVVYSSSISKDNVEYLSAK 84 (809)
T ss_pred ceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHcCCCCEEEECCCcCCCCHHHHHHH
Confidence 469999999999998 99999999999999976532 23445576553 2345677899988752 2 222211
Q ss_pred ----hhccHHHH-hc-cCC-CcEEEEccCCcccchHhHHhhhhcC
Q psy6348 168 ----NLINAEVL-KK-CKK-GVRVVNVARGGIVDENALLDSLKCG 205 (333)
Q Consensus 168 ----~li~~~~~-~~-mk~-gailIN~aRg~~vd~~aL~~aL~~g 205 (333)
.++++-++ .. ++. ..+-|--+.|+--...-+...|++.
T Consensus 85 ~~gi~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~li~~iL~~~ 129 (809)
T PRK14573 85 SRGNRLVHRAELLAELMQEQISILVSGSHGKTTVSSLITAIFQEA 129 (809)
T ss_pred HCCCcEEeHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHHhC
Confidence 12333332 23 332 3455555678877777777777763
No 389
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=94.74 E-value=0.098 Score=55.36 Aligned_cols=67 Identities=22% Similarity=0.212 Sum_probs=50.8
Q ss_pred cCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCC----------------------HHHHHhcCccc---------c
Q psy6348 96 LYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVS----------------------VEDAAKLNIAS---------L 144 (333)
Q Consensus 96 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~----------------------~~~a~~~gv~~---------~ 144 (333)
-.|++|.|||.|..|...|..|+..|++|++|++... .+.++++|+++ .
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~i 404 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGKDI 404 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCCcC
Confidence 3689999999999999999999999999999986432 12334556543 1
Q ss_pred ChhhhccCCCEEEEecCC
Q psy6348 145 GLEDIWPLADYITVHTPL 162 (333)
Q Consensus 145 ~l~ell~~aDvV~l~~P~ 162 (333)
+++++..+.|.|++++-.
T Consensus 405 ~~~~~~~~~DavilAtGa 422 (654)
T PRK12769 405 SLESLLEDYDAVFVGVGT 422 (654)
T ss_pred CHHHHHhcCCEEEEeCCC
Confidence 445666789999998753
No 390
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=94.73 E-value=0.077 Score=52.74 Aligned_cols=64 Identities=19% Similarity=0.190 Sum_probs=51.9
Q ss_pred cCCCEEEEEecC----------hHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCcccc-ChhhhccCCCEEEEecC
Q psy6348 96 LYGKTLAVLGLG----------RIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASL-GLEDIWPLADYITVHTP 161 (333)
Q Consensus 96 l~gktvGIIGlG----------~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~-~l~ell~~aDvV~l~~P 161 (333)
..|++|+|+|+. .-...+++.|...|.+|.+|||...... .+++.+. +++++++.||.|++..-
T Consensus 294 ~~~~~i~vlGlafK~~t~D~R~Sp~~~i~~~L~~~G~~v~~~DP~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (388)
T PRK15057 294 RKPQVVGIYRLIMKSGSDNFRASSIQGIMKRIKAKGVEVIIYEPVMKEDS--FFNSRLERDLATFKQQADVIISNRM 368 (388)
T ss_pred hcCCEEEEEcceeCCCCCccccChHHHHHHHHHhCCCEEEEECCCCCchh--hcCCeeeCCHHHHHHhCCEEEEcCC
Confidence 368999999994 3566899999999999999999864432 4467665 79999999999999753
No 391
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.71 E-value=0.069 Score=51.44 Aligned_cols=62 Identities=26% Similarity=0.331 Sum_probs=43.4
Q ss_pred EEEEEecChHHHHHHHHHhhCCC--EEEEEcCCCCHHHHHhcC------------ccc-cChhhhccCCCEEEEecC
Q psy6348 100 TLAVLGLGRIGREVALRMQAFGM--KVIGFDPMVSVEDAAKLN------------IAS-LGLEDIWPLADYITVHTP 161 (333)
Q Consensus 100 tvGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~~~~~a~~~g------------v~~-~~l~ell~~aDvV~l~~P 161 (333)
||+|||.|.||..+|..+...|. ++..+|........+.+. +.. ..-.+.+++||+|+++.-
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvitaG 77 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITAG 77 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEECCC
Confidence 68999999999999988876565 799999865432222211 111 122478899999999864
No 392
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=94.70 E-value=0.058 Score=43.91 Aligned_cols=96 Identities=21% Similarity=0.266 Sum_probs=57.3
Q ss_pred ecChHHHHHHHHHhhC----CCEEEE-EcCC--CCHHHHHh--cCccccChhhhcc--CCCEEEEecCCchhhHhhccHH
Q psy6348 105 GLGRIGREVALRMQAF----GMKVIG-FDPM--VSVEDAAK--LNIASLGLEDIWP--LADYITVHTPLIPQTKNLINAE 173 (333)
Q Consensus 105 GlG~IG~~vA~~l~~~----G~~V~~-~d~~--~~~~~a~~--~gv~~~~l~ell~--~aDvV~l~~P~t~~t~~li~~~ 173 (333)
|+|.||+.+++.+... +++|.+ +|+. .+...... ......++++++. ..|+|+=|.+..+. . +-
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t~~~~~-~----~~ 75 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECTSSEAV-A----EY 75 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-SSCHHH-H----HH
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhcccccccCCHHHHhcCcCCCEEEECCCchHH-H----HH
Confidence 8999999999999865 677665 4665 11112111 1223348899988 99999999663222 2 23
Q ss_pred HHhccCCCcEEEEccCCccc---chHhHHhhhhcC
Q psy6348 174 VLKKCKKGVRVVNVARGGIV---DENALLDSLKCG 205 (333)
Q Consensus 174 ~~~~mk~gailIN~aRg~~v---d~~aL~~aL~~g 205 (333)
..+.|+.|.-+|-.+-+.+. ..+.|.++.+++
T Consensus 76 ~~~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~~ 110 (117)
T PF03447_consen 76 YEKALERGKHVVTANKGALADEALYEELREAARKN 110 (117)
T ss_dssp HHHHHHTTCEEEES-HHHHHSHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCeEEEECHHHhhhHHHHHHHHHHHHHc
Confidence 34556788899998888877 333344444443
No 393
>PRK15076 alpha-galactosidase; Provisional
Probab=94.69 E-value=0.11 Score=52.28 Aligned_cols=112 Identities=12% Similarity=0.067 Sum_probs=67.4
Q ss_pred CEEEEEecChHHHHHHH--HH---hhC-CCEEEEEcCCCCHHH-H--------HhcCc--cc---cChhhhccCCCEEEE
Q psy6348 99 KTLAVLGLGRIGREVAL--RM---QAF-GMKVIGFDPMVSVED-A--------AKLNI--AS---LGLEDIWPLADYITV 158 (333)
Q Consensus 99 ktvGIIGlG~IG~~vA~--~l---~~~-G~~V~~~d~~~~~~~-a--------~~~gv--~~---~~l~ell~~aDvV~l 158 (333)
.||+|||.|.+|...+. .+ .++ |.+|+.||....... . ...+. +. .++.+.+++||+|+.
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~dADfVv~ 81 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDRREALQGADYVIN 81 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCCCCEEeE
Confidence 58999999999965543 22 233 569999998652211 1 11121 11 256799999999999
Q ss_pred ecCCc--hhhH----------h----------------------hcc--HHHHhccCCCcEEEEccCCcccchHhHHhhh
Q psy6348 159 HTPLI--PQTK----------N----------------------LIN--AEVLKKCKKGVRVVNVARGGIVDENALLDSL 202 (333)
Q Consensus 159 ~~P~t--~~t~----------~----------------------li~--~~~~~~mk~gailIN~aRg~~vd~~aL~~aL 202 (333)
+.-.. ..-+ | ++- .+.++...|++++||.+-.-=+-..++. .+
T Consensus 82 ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~a~iin~tNP~divt~~~~-~~ 160 (431)
T PRK15076 82 AIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPDALLLNYVNPMAMNTWAMN-RY 160 (431)
T ss_pred eeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHHh-cC
Confidence 87542 1110 0 000 1223445689999999887755555665 33
Q ss_pred hcCCceEEE
Q psy6348 203 KCGHCGGAA 211 (333)
Q Consensus 203 ~~g~i~gaa 211 (333)
...++.|.+
T Consensus 161 ~~~rviG~c 169 (431)
T PRK15076 161 PGIKTVGLC 169 (431)
T ss_pred CCCCEEEEC
Confidence 445666654
No 394
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.69 E-value=0.15 Score=45.85 Aligned_cols=37 Identities=27% Similarity=0.273 Sum_probs=33.6
Q ss_pred ccCCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348 95 ELYGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMV 131 (333)
Q Consensus 95 ~l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~ 131 (333)
+++||++.|.|. |.||+.+++.+...|++|++.++..
T Consensus 2 ~~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~ 39 (238)
T PRK05786 2 RLKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNE 39 (238)
T ss_pred CcCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 467899999998 7899999999999999999999865
No 395
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=94.68 E-value=0.21 Score=48.84 Aligned_cols=87 Identities=25% Similarity=0.229 Sum_probs=59.3
Q ss_pred CCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC-CHHHHHh-cCcccc-Ch-h--------hhc--cCCCEEEEecCC
Q psy6348 98 GKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV-SVEDAAK-LNIASL-GL-E--------DIW--PLADYITVHTPL 162 (333)
Q Consensus 98 gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~-~gv~~~-~l-~--------ell--~~aDvV~l~~P~ 162 (333)
+.++.|+|.|.||...+..++.+|. +|++.|+.. ..+.+++ .+.... +. + ++- ..+|+++-|+.
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G- 247 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG- 247 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC-
Confidence 3499999999999999999999996 677788876 4466666 444432 11 1 222 24899998886
Q ss_pred chhhHhhccHHHHhccCCCcEEEEccC
Q psy6348 163 IPQTKNLINAEVLKKCKKGVRVVNVAR 189 (333)
Q Consensus 163 t~~t~~li~~~~~~~mk~gailIN~aR 189 (333)
++. .-.+.++..+++..++.++-
T Consensus 248 ~~~----~~~~ai~~~r~gG~v~~vGv 270 (350)
T COG1063 248 SPP----ALDQALEALRPGGTVVVVGV 270 (350)
T ss_pred CHH----HHHHHHHHhcCCCEEEEEec
Confidence 222 11455666788877777654
No 396
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=94.65 E-value=0.17 Score=48.33 Aligned_cols=87 Identities=25% Similarity=0.240 Sum_probs=54.3
Q ss_pred CCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHhcCcccc-Ch------hhhccCCCEEEEecCCchhhHh
Q psy6348 97 YGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV-SVEDAAKLNIASL-GL------EDIWPLADYITVHTPLIPQTKN 168 (333)
Q Consensus 97 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~gv~~~-~l------~ell~~aDvV~l~~P~t~~t~~ 168 (333)
.|.++.|.|.|.+|+.+++.++++|++|++.++.. ..+.+.++|+..+ .. ++.-...|+++-+++..
T Consensus 169 ~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~d~v~~~~g~~----- 243 (337)
T cd05283 169 PGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALKLGADEFIATKDPEAMKKAAGSLDLIIDTVSAS----- 243 (337)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCcEEecCcchhhhhhccCCceEEEECCCCc-----
Confidence 57899999999999999999999999999998765 3344455554321 10 11123456666555421
Q ss_pred hccHHHHhccCCCcEEEEcc
Q psy6348 169 LINAEVLKKCKKGVRVVNVA 188 (333)
Q Consensus 169 li~~~~~~~mk~gailIN~a 188 (333)
......++.++++..+++++
T Consensus 244 ~~~~~~~~~l~~~G~~v~~g 263 (337)
T cd05283 244 HDLDPYLSLLKPGGTLVLVG 263 (337)
T ss_pred chHHHHHHHhcCCCEEEEEe
Confidence 11133445556655666553
No 397
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=94.64 E-value=0.2 Score=48.26 Aligned_cols=88 Identities=14% Similarity=0.104 Sum_probs=52.5
Q ss_pred CCCEEEEEecChHHHHHHHHHhh-CC-CEEEEEcCCCC-HHHHHhcCccccChhhhcc--CCCEEEEecCCchhhHhhcc
Q psy6348 97 YGKTLAVLGLGRIGREVALRMQA-FG-MKVIGFDPMVS-VEDAAKLNIASLGLEDIWP--LADYITVHTPLIPQTKNLIN 171 (333)
Q Consensus 97 ~gktvGIIGlG~IG~~vA~~l~~-~G-~~V~~~d~~~~-~~~a~~~gv~~~~l~ell~--~aDvV~l~~P~t~~t~~li~ 171 (333)
.|.++.|+|.|.||...++.++. +| .+|++.|+... .+.+++.+... ..+++.+ ..|+|+=++... .+...+
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~-~~~~~~~~~g~d~viD~~G~~-~~~~~~- 239 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETY-LIDDIPEDLAVDHAFECVGGR-GSQSAI- 239 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCcee-ehhhhhhccCCcEEEECCCCC-ccHHHH-
Confidence 48899999999999999888875 54 68999998653 23444433321 1122212 367777666421 011111
Q ss_pred HHHHhccCCCcEEEEc
Q psy6348 172 AEVLKKCKKGVRVVNV 187 (333)
Q Consensus 172 ~~~~~~mk~gailIN~ 187 (333)
...+..++++..++.+
T Consensus 240 ~~~~~~l~~~G~iv~~ 255 (341)
T cd08237 240 NQIIDYIRPQGTIGLM 255 (341)
T ss_pred HHHHHhCcCCcEEEEE
Confidence 3345667777666655
No 398
>PRK07411 hypothetical protein; Validated
Probab=94.64 E-value=0.078 Score=52.74 Aligned_cols=86 Identities=21% Similarity=0.193 Sum_probs=57.7
Q ss_pred cccCCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC-CH-----------H------------HHHhc--Ccc----
Q psy6348 94 TELYGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV-SV-----------E------------DAAKL--NIA---- 142 (333)
Q Consensus 94 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~-----------~------------~a~~~--gv~---- 142 (333)
..|..++|.|||+|.+|..+|+.|...|. ++..+|+.. .. . ..++. .++
T Consensus 34 ~~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~ 113 (390)
T PRK07411 34 KRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLY 113 (390)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEE
Confidence 46889999999999999999999999998 677777532 11 0 00111 111
Q ss_pred --cc---ChhhhccCCCEEEEecCCchhhHhhccHHHHhccCC
Q psy6348 143 --SL---GLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKK 180 (333)
Q Consensus 143 --~~---~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~mk~ 180 (333)
.. +..+++.++|+|+.|+ ++.+++.++++-..+.-+|
T Consensus 114 ~~~~~~~~~~~~~~~~D~Vvd~~-d~~~~r~~ln~~~~~~~~p 155 (390)
T PRK07411 114 ETRLSSENALDILAPYDVVVDGT-DNFPTRYLVNDACVLLNKP 155 (390)
T ss_pred ecccCHHhHHHHHhCCCEEEECC-CCHHHHHHHHHHHHHcCCC
Confidence 11 2346788999888776 4567888887766554333
No 399
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=94.64 E-value=0.1 Score=51.54 Aligned_cols=82 Identities=18% Similarity=0.202 Sum_probs=57.3
Q ss_pred cccCCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC-CH-------------------H----HHHhc--Ccc--c-
Q psy6348 94 TELYGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV-SV-------------------E----DAAKL--NIA--S- 143 (333)
Q Consensus 94 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~-------------------~----~a~~~--gv~--~- 143 (333)
..|.+++|.|||+|.+|..+++.|...|. ++..+|+.. +. + ...+. .++ .
T Consensus 37 ~~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~ 116 (370)
T PRK05600 37 ERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNAL 116 (370)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEe
Confidence 46899999999999999999999999997 788887542 00 0 00111 111 1
Q ss_pred ---c---ChhhhccCCCEEEEecCCchhhHhhccHHHHh
Q psy6348 144 ---L---GLEDIWPLADYITVHTPLIPQTKNLINAEVLK 176 (333)
Q Consensus 144 ---~---~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~ 176 (333)
. +.+++++++|+|+.|+ ++.+++.++++....
T Consensus 117 ~~~i~~~~~~~~~~~~DlVid~~-Dn~~~r~~in~~~~~ 154 (370)
T PRK05600 117 RERLTAENAVELLNGVDLVLDGS-DSFATKFLVADAAEI 154 (370)
T ss_pred eeecCHHHHHHHHhCCCEEEECC-CCHHHHHHHHHHHHH
Confidence 1 3456889999987776 467788888766544
No 400
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=94.63 E-value=0.19 Score=49.49 Aligned_cols=45 Identities=31% Similarity=0.414 Sum_probs=36.5
Q ss_pred CCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCC--HHHHHhcCc
Q psy6348 97 YGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVS--VEDAAKLNI 141 (333)
Q Consensus 97 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~--~~~a~~~gv 141 (333)
.|+++.|.|.|.+|...++.++++|.+|++.++... .+.++++|+
T Consensus 178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~lGa 224 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDRLGA 224 (375)
T ss_pred CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHHhCCC
Confidence 589999999999999999999999999999887542 234445554
No 401
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=94.62 E-value=0.091 Score=55.47 Aligned_cols=67 Identities=21% Similarity=0.185 Sum_probs=51.2
Q ss_pred cCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCC----------------------HHHHHhcCccc---------c
Q psy6348 96 LYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVS----------------------VEDAAKLNIAS---------L 144 (333)
Q Consensus 96 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~----------------------~~~a~~~gv~~---------~ 144 (333)
..||+|.|||.|..|...|..|+..|++|++|++... .+..+++|+++ .
T Consensus 308 ~~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~ 387 (639)
T PRK12809 308 PRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGRDI 387 (639)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCCcC
Confidence 3699999999999999999999999999999986531 12334556532 2
Q ss_pred ChhhhccCCCEEEEecCC
Q psy6348 145 GLEDIWPLADYITVHTPL 162 (333)
Q Consensus 145 ~l~ell~~aDvV~l~~P~ 162 (333)
+++++....|.|++++-.
T Consensus 388 ~~~~l~~~~DaV~latGa 405 (639)
T PRK12809 388 TFSDLTSEYDAVFIGVGT 405 (639)
T ss_pred CHHHHHhcCCEEEEeCCC
Confidence 455677789999998754
No 402
>PRK07877 hypothetical protein; Provisional
Probab=94.62 E-value=0.1 Score=55.81 Aligned_cols=82 Identities=18% Similarity=0.172 Sum_probs=58.2
Q ss_pred cccCCCEEEEEecChHHHHHHHHHhhCCC--EEEEEcCCC-C-----------------H-HHHH----hc--Ccc----
Q psy6348 94 TELYGKTLAVLGLGRIGREVALRMQAFGM--KVIGFDPMV-S-----------------V-EDAA----KL--NIA---- 142 (333)
Q Consensus 94 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~-~-----------------~-~~a~----~~--gv~---- 142 (333)
..|.+++|+|||+| +|+.+|..|...|. ++..+|... . + +.++ +. .++
T Consensus 103 ~~L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~ 181 (722)
T PRK07877 103 ERLGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVF 181 (722)
T ss_pred HHHhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEE
Confidence 35899999999999 99999999998884 777776321 0 0 0011 11 111
Q ss_pred -----ccChhhhccCCCEEEEecCCchhhHhhccHHHHhc
Q psy6348 143 -----SLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKK 177 (333)
Q Consensus 143 -----~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~ 177 (333)
..++++++.++|+|+-|+- +-+++.++++...++
T Consensus 182 ~~~i~~~n~~~~l~~~DlVvD~~D-~~~~R~~ln~~a~~~ 220 (722)
T PRK07877 182 TDGLTEDNVDAFLDGLDVVVEECD-SLDVKVLLREAARAR 220 (722)
T ss_pred eccCCHHHHHHHhcCCCEEEECCC-CHHHHHHHHHHHHHc
Confidence 1157788999999998885 678899998777654
No 403
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.61 E-value=0.1 Score=52.52 Aligned_cols=105 Identities=22% Similarity=0.179 Sum_probs=65.6
Q ss_pred EEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH------HHHHhcCcccc---Chh-----hhccCCCEEEEecCCchh
Q psy6348 100 TLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV------EDAAKLNIASL---GLE-----DIWPLADYITVHTPLIPQ 165 (333)
Q Consensus 100 tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~------~~a~~~gv~~~---~l~-----ell~~aDvV~l~~P~t~~ 165 (333)
++.|||+|..|.+.|+.|...|++|.++|..... ...++.|++.. ..+ +.+.+.|.|+..-...+.
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~~~~~~d~vv~s~gi~~~ 81 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSPELLERQQELEQEGITVKLGKPLELESFQPWLDQPDLVVVSPGIPWD 81 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCchhhHHHHHHHHHcCCEEEECCccchhhhhHHhhcCCEEEECCCCCCC
Confidence 6899999999999999999999999999976532 12344576542 222 467789988874322221
Q ss_pred hHh----------hccHHHH--hccCC-CcEEEEccCCcccchHhHHhhhhc
Q psy6348 166 TKN----------LINAEVL--KKCKK-GVRVVNVARGGIVDENALLDSLKC 204 (333)
Q Consensus 166 t~~----------li~~~~~--~~mk~-gailIN~aRg~~vd~~aL~~aL~~ 204 (333)
..- ++.+-.+ ..+++ ..+-|--+.|+--...-|...|+.
T Consensus 82 ~~~~~~a~~~~i~v~~~~~~~~~~~~~~~~I~VTGT~GKTTTt~ml~~iL~~ 133 (459)
T PRK02705 82 HPTLVELRERGIEVIGEIELAWRALKHIPWVGITGTNGKTTVTALLAHILQA 133 (459)
T ss_pred CHHHHHHHHcCCcEEEhHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHH
Confidence 111 1232222 33333 344555566777777766677754
No 404
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=94.57 E-value=0.13 Score=49.60 Aligned_cols=45 Identities=22% Similarity=0.337 Sum_probs=36.6
Q ss_pred CCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHhcCc
Q psy6348 97 YGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV-SVEDAAKLNI 141 (333)
Q Consensus 97 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~gv 141 (333)
.|.++.|.|.|.+|...++.+++.|.+|++.++.. ..+.++++|+
T Consensus 166 ~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~~Ga 211 (349)
T TIGR03201 166 KGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKGFGA 211 (349)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCC
Confidence 48899999999999999999999999999988755 2344455554
No 405
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=94.56 E-value=0.11 Score=51.03 Aligned_cols=82 Identities=23% Similarity=0.271 Sum_probs=55.7
Q ss_pred cccCCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC-C------------------H-HHH----Hhc--Ccc--c-
Q psy6348 94 TELYGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV-S------------------V-EDA----AKL--NIA--S- 143 (333)
Q Consensus 94 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~------------------~-~~a----~~~--gv~--~- 143 (333)
..|.+++|.|||+|.+|..+|+.|...|. ++..+|+.. + + +.+ ++. .++ .
T Consensus 24 ~~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~ 103 (355)
T PRK05597 24 QSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVS 103 (355)
T ss_pred HHHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEE
Confidence 46899999999999999999999999998 677777542 0 0 000 111 111 1
Q ss_pred ---c---ChhhhccCCCEEEEecCCchhhHhhccHHHHh
Q psy6348 144 ---L---GLEDIWPLADYITVHTPLIPQTKNLINAEVLK 176 (333)
Q Consensus 144 ---~---~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~ 176 (333)
. +..++++++|+|+.++- +..++.+++.-..+
T Consensus 104 ~~~i~~~~~~~~~~~~DvVvd~~d-~~~~r~~~n~~c~~ 141 (355)
T PRK05597 104 VRRLTWSNALDELRDADVILDGSD-NFDTRHLASWAAAR 141 (355)
T ss_pred EeecCHHHHHHHHhCCCEEEECCC-CHHHHHHHHHHHHH
Confidence 1 23467889998888874 56777777665544
No 406
>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional
Probab=94.56 E-value=0.4 Score=49.51 Aligned_cols=96 Identities=18% Similarity=0.087 Sum_probs=66.2
Q ss_pred ccccCCCEEEEEec---ChHHHHHHHHHhhCC-CEEEEEcCCC---CH---HHHHhcCc--cc-cChhhhccCCCEE--E
Q psy6348 93 GTELYGKTLAVLGL---GRIGREVALRMQAFG-MKVIGFDPMV---SV---EDAAKLNI--AS-LGLEDIWPLADYI--T 157 (333)
Q Consensus 93 g~~l~gktvGIIGl---G~IG~~vA~~l~~~G-~~V~~~d~~~---~~---~~a~~~gv--~~-~~l~ell~~aDvV--~ 157 (333)
|..+.|+||++||= +++..+++..+..|| ++|....|.. .. +.+++.|. .. .++++.+++||+. .
T Consensus 169 G~~l~glkVa~vGD~~~~rva~Sl~~~l~~~g~~~v~l~~P~~~~~p~~~~~~a~~~G~~v~i~~d~~eav~~AD~tdvw 248 (525)
T PRK13376 169 NFDNSFIHIALVGDLLHGRTVHSKVNGLKIFKNVKVDLIAPEELAMPEHYVEKMKKNGFEVRIFSSIEEYLSQKDVAKIW 248 (525)
T ss_pred CCCcCCCEEEEECCCCCCcHHHHHHHHHHhcCCcEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHhccCCccceE
Confidence 33478999999998 689999999999998 9999888743 22 22334454 32 3799999999952 2
Q ss_pred E-------ecCCc-----hhh--HhhccHHHHhccCCCcEEEEcc
Q psy6348 158 V-------HTPLI-----PQT--KNLINAEVLKKCKKGVRVVNVA 188 (333)
Q Consensus 158 l-------~~P~t-----~~t--~~li~~~~~~~mk~gailIN~a 188 (333)
. ..+.. ... .-.++++.++.+|+++++..+.
T Consensus 249 ~~~RiQ~Ermg~~~~~~~~~~~~~y~vt~elm~~ak~~ai~MHcL 293 (525)
T PRK13376 249 YFTRLQLERMGEDILEKEHILRKAVTFRKEFLDKLPEGVKFYHPL 293 (525)
T ss_pred EEeccccccCCCccchhHHHHhcCcEECHHHHhccCCCCEEECCC
Confidence 3 12110 011 1235788888889999999884
No 407
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=94.51 E-value=0.094 Score=52.78 Aligned_cols=105 Identities=20% Similarity=0.204 Sum_probs=66.5
Q ss_pred EEEEecChHHHH-HHHHHhhCCCEEEEEcCCCCH--HHHHhcCcccc--ChhhhccCCCEEEEe--cC-CchhhH-----
Q psy6348 101 LAVLGLGRIGRE-VALRMQAFGMKVIGFDPMVSV--EDAAKLNIASL--GLEDIWPLADYITVH--TP-LIPQTK----- 167 (333)
Q Consensus 101 vGIIGlG~IG~~-vA~~l~~~G~~V~~~d~~~~~--~~a~~~gv~~~--~l~ell~~aDvV~l~--~P-~t~~t~----- 167 (333)
+-+||.|.+|.+ +|+.|+..|++|.++|..... +..++.|++.. .-.+.+.++|+|+.. +| .++..+
T Consensus 2 ~~~iGiggsGm~~la~~L~~~G~~v~~~D~~~~~~~~~l~~~gi~~~~g~~~~~~~~~d~vV~spgi~~~~p~~~~a~~~ 81 (448)
T TIGR01082 2 IHFVGIGGIGMSGIAEILLNRGYQVSGSDIAENATTKRLEALGIPIYIGHSAENLDDADVVVVSAAIKDDNPEIVEAKER 81 (448)
T ss_pred EEEEEECHHHHHHHHHHHHHCCCeEEEECCCcchHHHHHHHCcCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHHHHHHc
Confidence 679999999998 999999999999999976532 22344576543 123456789988875 22 222221
Q ss_pred --hhccHH-HH-hccC-CCcEEEEccCCcccchHhHHhhhhcC
Q psy6348 168 --NLINAE-VL-KKCK-KGVRVVNVARGGIVDENALLDSLKCG 205 (333)
Q Consensus 168 --~li~~~-~~-~~mk-~gailIN~aRg~~vd~~aL~~aL~~g 205 (333)
.++++. .+ ..++ ...+-|--+.|+--...-+...|+..
T Consensus 82 ~i~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~ 124 (448)
T TIGR01082 82 GIPVIRRAEMLAELMRFRHSIAVAGTHGKTTTTAMIAVILKEA 124 (448)
T ss_pred CCceEeHHHHHHHHHhcCcEEEEECCCChHHHHHHHHHHHHHc
Confidence 123333 22 2233 23455555668877777777777653
No 408
>PRK05442 malate dehydrogenase; Provisional
Probab=94.49 E-value=0.13 Score=49.90 Aligned_cols=97 Identities=19% Similarity=0.215 Sum_probs=57.7
Q ss_pred CEEEEEec-ChHHHHHHHHHhhCCC-------EEEEEcCCCCH--HHHHhc-----------Cccc-cChhhhccCCCEE
Q psy6348 99 KTLAVLGL-GRIGREVALRMQAFGM-------KVIGFDPMVSV--EDAAKL-----------NIAS-LGLEDIWPLADYI 156 (333)
Q Consensus 99 ktvGIIGl-G~IG~~vA~~l~~~G~-------~V~~~d~~~~~--~~a~~~-----------gv~~-~~l~ell~~aDvV 156 (333)
+||+|||. |.+|..+|-.+...|+ ++..+|..... ..+..+ .+.. ....+.+++||+|
T Consensus 5 ~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~daDiV 84 (326)
T PRK05442 5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKDADVA 84 (326)
T ss_pred cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCCCCEE
Confidence 48999998 9999999988765443 78999974321 111111 1111 1455889999999
Q ss_pred EEecCC--ch-hhHhh-c--c----HH---HHhc-cCCCcEEEEccCCcccchHh
Q psy6348 157 TVHTPL--IP-QTKNL-I--N----AE---VLKK-CKKGVRVVNVARGGIVDENA 197 (333)
Q Consensus 157 ~l~~P~--t~-~t~~l-i--~----~~---~~~~-mk~gailIN~aRg~~vd~~a 197 (333)
+++.-. .+ +++-- + + ++ .+.. -++++++|.++ .++|.-.
T Consensus 85 VitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs--NPvDv~t 137 (326)
T PRK05442 85 LLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVG--NPANTNA 137 (326)
T ss_pred EEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeC--CchHHHH
Confidence 998642 11 12211 1 1 11 1222 34688999987 5555444
No 409
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.46 E-value=0.11 Score=52.20 Aligned_cols=108 Identities=17% Similarity=0.195 Sum_probs=65.7
Q ss_pred cCC-CEEEEEecChHHHHHHHHHhhC--CCEEEEEcCCCCHH---HHHhcCcccc--C-hhhhccCCCEEEEec--C-Cc
Q psy6348 96 LYG-KTLAVLGLGRIGREVALRMQAF--GMKVIGFDPMVSVE---DAAKLNIASL--G-LEDIWPLADYITVHT--P-LI 163 (333)
Q Consensus 96 l~g-ktvGIIGlG~IG~~vA~~l~~~--G~~V~~~d~~~~~~---~a~~~gv~~~--~-l~ell~~aDvV~l~~--P-~t 163 (333)
+.+ |++.|||+|..|.+.++.|... |++|.++|...... ..+ .|++.. . -.+.+.++|+|+..- | .+
T Consensus 4 ~~~~~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~~~~~l~-~g~~~~~g~~~~~~~~~~d~vV~SpgI~~~~ 82 (438)
T PRK04663 4 WQGIKNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPPGQEQLP-EDVELHSGGWNLEWLLEADLVVTNPGIALAT 82 (438)
T ss_pred ccCCceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCchhHHHhh-cCCEEEeCCCChHHhccCCEEEECCCCCCCC
Confidence 345 7899999999999999999877 58999999754222 222 266542 1 234457899887753 2 22
Q ss_pred hhhHh-------hccHH-HH-hccCCCcEEEEccCCcccchHhHHhhhhc
Q psy6348 164 PQTKN-------LINAE-VL-KKCKKGVRVVNVARGGIVDENALLDSLKC 204 (333)
Q Consensus 164 ~~t~~-------li~~~-~~-~~mk~gailIN~aRg~~vd~~aL~~aL~~ 204 (333)
+.... ++++- .+ ..++...+-|--+-|+--...-+...|+.
T Consensus 83 p~~~~a~~~gi~i~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~ 132 (438)
T PRK04663 83 PEIQQVLAAGIPVVGDIELFAWAVDKPVIAITGSNGKSTVTDLTGVMAKA 132 (438)
T ss_pred HHHHHHHHCCCcEEEHHHHHHhhcCCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence 22211 23332 22 23443344555556777766667777764
No 410
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=94.44 E-value=0.13 Score=49.78 Aligned_cols=91 Identities=21% Similarity=0.291 Sum_probs=56.4
Q ss_pred EEEEEec-ChHHHHHHHHHhhCCC--EEEEEcCCCCHHHHHhc--C---cccc------ChhhhccCCCEEEEecCCc--
Q psy6348 100 TLAVLGL-GRIGREVALRMQAFGM--KVIGFDPMVSVEDAAKL--N---IASL------GLEDIWPLADYITVHTPLI-- 163 (333)
Q Consensus 100 tvGIIGl-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~a~~~--g---v~~~------~l~ell~~aDvV~l~~P~t-- 163 (333)
||+|||. |.||..+|-.|...|. ++..||.......+.++ + .... ++.+.+++||+|+++.-..
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~~~~ 80 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGVPRK 80 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCCCCC
Confidence 6899999 9999999988876554 89999976522111111 1 1111 1357899999999986532
Q ss_pred h-hhH--------hhcc--HHHHhccCCCcEEEEccCC
Q psy6348 164 P-QTK--------NLIN--AEVLKKCKKGVRVVNVARG 190 (333)
Q Consensus 164 ~-~t~--------~li~--~~~~~~mk~gailIN~aRg 190 (333)
+ .++ .++. .+.+....|++++|+++-.
T Consensus 81 ~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsNP 118 (312)
T TIGR01772 81 PGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNP 118 (312)
T ss_pred CCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecCc
Confidence 1 111 1111 1123334689999999654
No 411
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=94.42 E-value=0.11 Score=50.89 Aligned_cols=86 Identities=17% Similarity=0.174 Sum_probs=51.4
Q ss_pred CCEEEEEec-ChHHHHHHHHHhhCCC---EEEEEcCCCCH-HHHHhcCc--cccChh-hhccCCCEEEEecCCchhhHhh
Q psy6348 98 GKTLAVLGL-GRIGREVALRMQAFGM---KVIGFDPMVSV-EDAAKLNI--ASLGLE-DIWPLADYITVHTPLIPQTKNL 169 (333)
Q Consensus 98 gktvGIIGl-G~IG~~vA~~l~~~G~---~V~~~d~~~~~-~~a~~~gv--~~~~l~-ell~~aDvV~l~~P~t~~t~~l 169 (333)
..+|+|||. |.+|+.+.+.|...++ ++.......+. ......+. ...+++ +.+.++|+|++++|.. ....+
T Consensus 7 ~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~~~~~~v~~~~~~~~~~~D~vf~a~p~~-~s~~~ 85 (344)
T PLN02383 7 GPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEGRDYTVEELTEDSFDGVDIALFSAGGS-ISKKF 85 (344)
T ss_pred CCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeeecCceeEEEeCCHHHHcCCCEEEECCCcH-HHHHH
Confidence 468999998 9999999999987555 34333222111 11111221 111222 4458899999999943 33333
Q ss_pred ccHHHHhccCCCcEEEEcc
Q psy6348 170 INAEVLKKCKKGVRVVNVA 188 (333)
Q Consensus 170 i~~~~~~~mk~gailIN~a 188 (333)
. .+ ..+.|+.+||.|
T Consensus 86 ~-~~---~~~~g~~VIDlS 100 (344)
T PLN02383 86 G-PI---AVDKGAVVVDNS 100 (344)
T ss_pred H-HH---HHhCCCEEEECC
Confidence 2 11 135789999998
No 412
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=94.41 E-value=0.17 Score=49.35 Aligned_cols=45 Identities=31% Similarity=0.423 Sum_probs=37.3
Q ss_pred CCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC-CHHHHHhcCc
Q psy6348 97 YGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV-SVEDAAKLNI 141 (333)
Q Consensus 97 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~~gv 141 (333)
.|.+|.|.|.|.+|...++.++..|. +|++.++.. ..+.++++|+
T Consensus 191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga 237 (371)
T cd08281 191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGA 237 (371)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCC
Confidence 47899999999999999999999999 699988765 3345566665
No 413
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=94.40 E-value=0.19 Score=48.45 Aligned_cols=77 Identities=12% Similarity=0.195 Sum_probs=52.6
Q ss_pred CEEEEEec-ChHHHHHHHHHhhC-CCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhccHHHHh
Q psy6348 99 KTLAVLGL-GRIGREVALRMQAF-GMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLK 176 (333)
Q Consensus 99 ktvGIIGl-G~IG~~vA~~l~~~-G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~ 176 (333)
-+|+|+|. |-.|.++.++|... .+++........ +...+.+++++++|++++++|. .....+. ...
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~--------~~~~~~~~~~~~~D~vFlalp~-~~s~~~~-~~~-- 69 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRR--------KDAAERAKLLNAADVAILCLPD-DAAREAV-SLV-- 69 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCCCeEEEEEecccc--------cCcCCHhHhhcCCCEEEECCCH-HHHHHHH-HHH--
Confidence 37999998 99999999999864 456655543221 2223566788899999999994 3333332 211
Q ss_pred ccCCCcEEEEcc
Q psy6348 177 KCKKGVRVVNVA 188 (333)
Q Consensus 177 ~mk~gailIN~a 188 (333)
.+.|..+||.|
T Consensus 70 -~~~g~~VIDlS 80 (310)
T TIGR01851 70 -DNPNTCIIDAS 80 (310)
T ss_pred -HhCCCEEEECC
Confidence 25688999987
No 414
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=94.39 E-value=0.23 Score=46.29 Aligned_cols=90 Identities=10% Similarity=0.076 Sum_probs=55.4
Q ss_pred CCCEEEEEecChHHHHHHHHHhhCC-----------CEEEEEcCCC-CHHH-------------------HHh----cCc
Q psy6348 97 YGKTLAVLGLGRIGREVALRMQAFG-----------MKVIGFDPMV-SVED-------------------AAK----LNI 141 (333)
Q Consensus 97 ~gktvGIIGlG~IG~~vA~~l~~~G-----------~~V~~~d~~~-~~~~-------------------a~~----~gv 141 (333)
+..+|.|||+|.+|..+++.|...| .++..+|+.. +... +++ .++
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLnRQlf~~~dVG~~Ka~v~~~ri~~~~~~ 89 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQAFYPADVGQNKAIVLVNRLNQAMGT 89 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhhcccCChhHCCcHHHHHHHHHHHhccCc
Confidence 5679999999999999999998753 3889998543 1100 000 011
Q ss_pred cc------cChhhhccCCCEEEEecCCchhhHhhccHHHHh--ccCCCcEEEEccC
Q psy6348 142 AS------LGLEDIWPLADYITVHTPLIPQTKNLINAEVLK--KCKKGVRVVNVAR 189 (333)
Q Consensus 142 ~~------~~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~--~mk~gailIN~aR 189 (333)
.+ ++.++.+.++|+|+-|+= +-.++..+++.... .| ...+++++.
T Consensus 90 ~i~a~~~~~~~~~~~~~~DiVi~avD-n~~aR~~l~~~~~~~~~~--~~~~ld~Gn 142 (244)
T TIGR03736 90 DWTAHPERVERSSTLHRPDIVIGCVD-NRAARLAILRAFEGGYSG--YAYWLDLGN 142 (244)
T ss_pred eEEEEEeeeCchhhhcCCCEEEECCC-CHHHHHHHHHHHHHhccc--ccceecccC
Confidence 11 111334567888888873 56667777666544 12 246676654
No 415
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=94.32 E-value=0.072 Score=53.34 Aligned_cols=36 Identities=28% Similarity=0.519 Sum_probs=29.9
Q ss_pred CEEEEEecChHHHHHHHHHhh-CCCEEEE-EcCCCCHH
Q psy6348 99 KTLAVLGLGRIGREVALRMQA-FGMKVIG-FDPMVSVE 134 (333)
Q Consensus 99 ktvGIIGlG~IG~~vA~~l~~-~G~~V~~-~d~~~~~~ 134 (333)
.++||.|||+||+.+++.+.. ++++|++ +||....+
T Consensus 86 ~kvgInGFGRIGR~v~R~~~~~~~i~vvaINdp~~~~~ 123 (421)
T PLN02272 86 TKIGINGFGRIGRLVLRIATSRDDIEVVAVNDPFIDAK 123 (421)
T ss_pred eEEEEECcCHHHHHHHHHHhhcCCcEEEEecCCCCCHH
Confidence 499999999999999999875 7999888 67665443
No 416
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=94.31 E-value=0.2 Score=47.37 Aligned_cols=90 Identities=20% Similarity=0.152 Sum_probs=58.3
Q ss_pred CCCEEEEEecChHHHHHHHHHhhCCCE-EEEEcCCCC-HHHHHhcCccc-cChh-------h--hccCCCEEEEecCCch
Q psy6348 97 YGKTLAVLGLGRIGREVALRMQAFGMK-VIGFDPMVS-VEDAAKLNIAS-LGLE-------D--IWPLADYITVHTPLIP 164 (333)
Q Consensus 97 ~gktvGIIGlG~IG~~vA~~l~~~G~~-V~~~d~~~~-~~~a~~~gv~~-~~l~-------e--ll~~aDvV~l~~P~t~ 164 (333)
.|.++.|+|.|.+|+.+++.+++.|.+ |++.++... .+.+++.|+.. ...+ . .-+..|+++-+++..
T Consensus 159 ~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~vd~v~~~~~~~- 237 (334)
T cd08234 159 PGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGATETVDPSREDPEAQKEDNPYGFDVVIEATGVP- 237 (334)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCeEEecCCCCCHHHHHHhcCCCCcEEEECCCCh-
Confidence 578999999999999999999999998 788877542 23334455421 1111 0 123578887766421
Q ss_pred hhHhhccHHHHhccCCCcEEEEccCCc
Q psy6348 165 QTKNLINAEVLKKCKKGVRVVNVARGG 191 (333)
Q Consensus 165 ~t~~li~~~~~~~mk~gailIN~aRg~ 191 (333)
....+.+..|+++..++.++...
T Consensus 238 ----~~~~~~~~~l~~~G~~v~~g~~~ 260 (334)
T cd08234 238 ----KTLEQAIEYARRGGTVLVFGVYA 260 (334)
T ss_pred ----HHHHHHHHHHhcCCEEEEEecCC
Confidence 12244466677777888776543
No 417
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=94.26 E-value=0.098 Score=50.85 Aligned_cols=87 Identities=17% Similarity=0.186 Sum_probs=52.2
Q ss_pred CCEEEEEec-ChHHHHHHHHHhhCCCE---EEEEcCCCCHHHHHhc-C--ccccChh-hhccCCCEEEEecCCchhhHhh
Q psy6348 98 GKTLAVLGL-GRIGREVALRMQAFGMK---VIGFDPMVSVEDAAKL-N--IASLGLE-DIWPLADYITVHTPLIPQTKNL 169 (333)
Q Consensus 98 gktvGIIGl-G~IG~~vA~~l~~~G~~---V~~~d~~~~~~~a~~~-g--v~~~~l~-ell~~aDvV~l~~P~t~~t~~l 169 (333)
+++|+|+|. |.+|+.+.+.|...|+. +.+..+..+....... + +...+++ +.+.++|+|++++|. ..++.+
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g~~i~v~d~~~~~~~~vDvVf~A~g~-g~s~~~ 79 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKGKELKVEDLTTFDFSGVDIALFSAGG-SVSKKY 79 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCCceeEEeeCCHHHHcCCCEEEECCCh-HHHHHH
Confidence 468999998 99999999999986653 4555332211111111 2 1122222 234789999999983 233333
Q ss_pred ccHHHHhccCCCcEEEEccC
Q psy6348 170 INAEVLKKCKKGVRVVNVAR 189 (333)
Q Consensus 170 i~~~~~~~mk~gailIN~aR 189 (333)
. . +.++.|+.+|+.+.
T Consensus 80 ~-~---~~~~~G~~VIDlS~ 95 (334)
T PRK14874 80 A-P---KAAAAGAVVIDNSS 95 (334)
T ss_pred H-H---HHHhCCCEEEECCc
Confidence 2 1 12367889998874
No 418
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.14 E-value=0.092 Score=50.96 Aligned_cols=89 Identities=19% Similarity=0.248 Sum_probs=55.3
Q ss_pred EEEEEec-ChHHHHHHHHHhhCC-------CEEEEEcCCCCHH--HHHhcCcc------------ccChhhhccCCCEEE
Q psy6348 100 TLAVLGL-GRIGREVALRMQAFG-------MKVIGFDPMVSVE--DAAKLNIA------------SLGLEDIWPLADYIT 157 (333)
Q Consensus 100 tvGIIGl-G~IG~~vA~~l~~~G-------~~V~~~d~~~~~~--~a~~~gv~------------~~~l~ell~~aDvV~ 157 (333)
+|+|+|. |.+|+.++..|...+ .+|..+|+....+ ......+. ..++.+.+++||+|+
T Consensus 4 kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDiVI 83 (325)
T cd01336 4 RVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDVAI 83 (325)
T ss_pred EEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCEEE
Confidence 7999999 999999999987644 4899999754221 11111111 125568899999999
Q ss_pred EecCCch---hhHh-hc--cH-------HHHhcc-CCCcEEEEcc
Q psy6348 158 VHTPLIP---QTKN-LI--NA-------EVLKKC-KKGVRVVNVA 188 (333)
Q Consensus 158 l~~P~t~---~t~~-li--~~-------~~~~~m-k~gailIN~a 188 (333)
++.-... .++. ++ |. ..+... ++++++|.++
T Consensus 84 ~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvs 128 (325)
T cd01336 84 LVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVG 128 (325)
T ss_pred EeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEec
Confidence 8754321 1211 11 11 123333 5788899887
No 419
>PLN00106 malate dehydrogenase
Probab=94.13 E-value=0.11 Score=50.52 Aligned_cols=114 Identities=22% Similarity=0.237 Sum_probs=66.8
Q ss_pred CCEEEEEec-ChHHHHHHHHHhhCCC--EEEEEcCCCCHHHHHhc-------Ccc----ccChhhhccCCCEEEEecCC-
Q psy6348 98 GKTLAVLGL-GRIGREVALRMQAFGM--KVIGFDPMVSVEDAAKL-------NIA----SLGLEDIWPLADYITVHTPL- 162 (333)
Q Consensus 98 gktvGIIGl-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~a~~~-------gv~----~~~l~ell~~aDvV~l~~P~- 162 (333)
.+||+|||. |+||+.+|..|...+. ++..+|.......+.++ .+. ..++.+.+++||+|+++.-.
T Consensus 18 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG~~ 97 (323)
T PLN00106 18 GFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAGVP 97 (323)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCCCC
Confidence 469999999 9999999998885444 89999976522111110 111 11346889999999998542
Q ss_pred -ch-hhHh-hc--c----HH---HHhccCCCcEEEEccCCcc----cchHhHHhh--hhcCCceEEE
Q psy6348 163 -IP-QTKN-LI--N----AE---VLKKCKKGVRVVNVARGGI----VDENALLDS--LKCGHCGGAA 211 (333)
Q Consensus 163 -t~-~t~~-li--~----~~---~~~~mk~gailIN~aRg~~----vd~~aL~~a--L~~g~i~gaa 211 (333)
.+ .++. ++ | ++ .+....+++++++++-.-- +....+.+. +...++.|.+
T Consensus 98 ~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPvD~~~~i~t~~~~~~s~~p~~~viG~~ 164 (323)
T PLN00106 98 RKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPVNSTVPIAAEVLKKAGVYDPKKLFGVT 164 (323)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHHcCCCCcceEEEEe
Confidence 21 1221 11 1 11 2333457899999876543 333333332 2335665554
No 420
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=94.11 E-value=0.057 Score=45.15 Aligned_cols=34 Identities=29% Similarity=0.500 Sum_probs=29.6
Q ss_pred CCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC
Q psy6348 98 GKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV 131 (333)
Q Consensus 98 gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~ 131 (333)
.++|.|+|+|.+|+.+|+.|...|+ ++..+|+..
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~ 36 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI 36 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence 5799999999999999999999898 788888654
No 421
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=94.04 E-value=0.26 Score=46.84 Aligned_cols=85 Identities=19% Similarity=0.109 Sum_probs=52.1
Q ss_pred CCCEEEEEecChHHHHHHHHHhhCCCE-EEEEcCCCCH-HHHHhcCccccChhh-hccCCCEEEEecCCchhhHhhccHH
Q psy6348 97 YGKTLAVLGLGRIGREVALRMQAFGMK-VIGFDPMVSV-EDAAKLNIASLGLED-IWPLADYITVHTPLIPQTKNLINAE 173 (333)
Q Consensus 97 ~gktvGIIGlG~IG~~vA~~l~~~G~~-V~~~d~~~~~-~~a~~~gv~~~~l~e-ll~~aDvV~l~~P~t~~t~~li~~~ 173 (333)
.|+++.|+|.|.||...++.++.+|.+ |++.|+.... +.+.... ..+.++ .-...|+|+=++... . .+ ..
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~--~i~~~~~~~~g~Dvvid~~G~~-~---~~-~~ 216 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYE--VLDPEKDPRRDYRAIYDASGDP-S---LI-DT 216 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhcc--ccChhhccCCCCCEEEECCCCH-H---HH-HH
Confidence 578999999999999999999999997 5556664311 1222211 112111 123467777766521 1 11 34
Q ss_pred HHhccCCCcEEEEcc
Q psy6348 174 VLKKCKKGVRVVNVA 188 (333)
Q Consensus 174 ~~~~mk~gailIN~a 188 (333)
.++.++++..++.++
T Consensus 217 ~~~~l~~~G~iv~~G 231 (308)
T TIGR01202 217 LVRRLAKGGEIVLAG 231 (308)
T ss_pred HHHhhhcCcEEEEEe
Confidence 556677777777663
No 422
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=94.04 E-value=0.13 Score=51.12 Aligned_cols=83 Identities=20% Similarity=0.221 Sum_probs=56.3
Q ss_pred cccCCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC-CH-------------------HHH----Hhc--Cccc---
Q psy6348 94 TELYGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV-SV-------------------EDA----AKL--NIAS--- 143 (333)
Q Consensus 94 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~-------------------~~a----~~~--gv~~--- 143 (333)
..|..++|.|||+|.+|..+|+.|...|. ++..+|... .. +.+ ++. .++.
T Consensus 38 ~~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~i~~~ 117 (392)
T PRK07878 38 KRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNVRLH 117 (392)
T ss_pred HHHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCCcEEEEE
Confidence 45889999999999999999999998887 677777432 10 000 111 1111
Q ss_pred ---c---ChhhhccCCCEEEEecCCchhhHhhccHHHHhc
Q psy6348 144 ---L---GLEDIWPLADYITVHTPLIPQTKNLINAEVLKK 177 (333)
Q Consensus 144 ---~---~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~ 177 (333)
. +..++++++|+|+.|+ .+..++.++++-..+.
T Consensus 118 ~~~i~~~~~~~~~~~~D~Vvd~~-d~~~~r~~ln~~~~~~ 156 (392)
T PRK07878 118 EFRLDPSNAVELFSQYDLILDGT-DNFATRYLVNDAAVLA 156 (392)
T ss_pred eccCChhHHHHHHhcCCEEEECC-CCHHHHHHHHHHHHHc
Confidence 1 2346788899888775 4667787777766553
No 423
>PRK06349 homoserine dehydrogenase; Provisional
Probab=93.98 E-value=0.18 Score=50.67 Aligned_cols=105 Identities=15% Similarity=0.152 Sum_probs=60.3
Q ss_pred CEEEEEecChHHHHHHHHHhhC----------CCEEE-EEcCCCCHHHHHh-cCccc-cChhhhcc--CCCEEEEecCCc
Q psy6348 99 KTLAVLGLGRIGREVALRMQAF----------GMKVI-GFDPMVSVEDAAK-LNIAS-LGLEDIWP--LADYITVHTPLI 163 (333)
Q Consensus 99 ktvGIIGlG~IG~~vA~~l~~~----------G~~V~-~~d~~~~~~~a~~-~gv~~-~~l~ell~--~aDvV~l~~P~t 163 (333)
-+|||+|+|.||+.+++.+... +.+|. ++|+......... .+..+ .++++++. +.|+|+.+++..
T Consensus 4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~~~~~~~~~d~~~ll~d~~iDvVve~tg~~ 83 (426)
T PRK06349 4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVDLPGILLTTDPEELVNDPDIDIVVELMGGI 83 (426)
T ss_pred EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCCCcccceeCCHHHHhhCCCCCEEEECCCCc
Confidence 4799999999999998877432 45554 3576542211111 11222 37889885 479999998743
Q ss_pred hhhHhhccHHHHhccCCCcEEEEccCCccc-chHhHHhhhhcCCc
Q psy6348 164 PQTKNLINAEVLKKCKKGVRVVNVARGGIV-DENALLDSLKCGHC 207 (333)
Q Consensus 164 ~~t~~li~~~~~~~mk~gailIN~aRg~~v-d~~aL~~aL~~g~i 207 (333)
.... .-..+.|+.|.-+|...-.-.. .-++|.++.++..+
T Consensus 84 ~~~~----~~~~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv 124 (426)
T PRK06349 84 EPAR----ELILKALEAGKHVVTANKALLAVHGAELFAAAEEKGV 124 (426)
T ss_pred hHHH----HHHHHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCC
Confidence 2211 1222446677666643222222 22567777666554
No 424
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.96 E-value=0.22 Score=48.13 Aligned_cols=92 Identities=23% Similarity=0.287 Sum_probs=57.8
Q ss_pred CEEEEEec-ChHHHHHHHHHhhCCC--EEEEEcCCCCHHHHHhc--C---cccc------ChhhhccCCCEEEEecCC--
Q psy6348 99 KTLAVLGL-GRIGREVALRMQAFGM--KVIGFDPMVSVEDAAKL--N---IASL------GLEDIWPLADYITVHTPL-- 162 (333)
Q Consensus 99 ktvGIIGl-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~a~~~--g---v~~~------~l~ell~~aDvV~l~~P~-- 162 (333)
.||+|||. |.+|..+|-.+...|. ++..+|.......+.++ + .... ++.+.+++||+|+++.-.
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~~~ 80 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGVPR 80 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecCccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCCCC
Confidence 48999999 9999999999887674 79999976211111111 1 1111 124779999999998643
Q ss_pred ch-hhHh-hc--cH-------HHHhccCCCcEEEEccCC
Q psy6348 163 IP-QTKN-LI--NA-------EVLKKCKKGVRVVNVARG 190 (333)
Q Consensus 163 t~-~t~~-li--~~-------~~~~~mk~gailIN~aRg 190 (333)
.+ ++|- ++ |. +.+....|++++|+++-.
T Consensus 81 k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNP 119 (310)
T cd01337 81 KPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNP 119 (310)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCc
Confidence 22 2222 11 11 123334689999999654
No 425
>PRK06182 short chain dehydrogenase; Validated
Probab=93.96 E-value=0.22 Score=46.01 Aligned_cols=35 Identities=34% Similarity=0.377 Sum_probs=31.6
Q ss_pred CCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348 97 YGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMV 131 (333)
Q Consensus 97 ~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~ 131 (333)
.+|++.|.|. |.||+.+|+.|...|++|++.++..
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~ 37 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQGYTVYGAARRV 37 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4789999996 8999999999999999999998865
No 426
>PRK14851 hypothetical protein; Provisional
Probab=93.94 E-value=0.26 Score=52.56 Aligned_cols=166 Identities=12% Similarity=0.058 Sum_probs=93.4
Q ss_pred cccCCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC-C------------------H-HHH----Hhc--Cc--c--
Q psy6348 94 TELYGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV-S------------------V-EDA----AKL--NI--A-- 142 (333)
Q Consensus 94 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~------------------~-~~a----~~~--gv--~-- 142 (333)
..|.+++|+|||+|.+|+.+|..|...|. ++...|... . + +.+ .+. .+ +
T Consensus 39 ~kL~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP~~~I~~~ 118 (679)
T PRK14851 39 ERLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINPFLEITPF 118 (679)
T ss_pred HHHhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCCCCeEEEE
Confidence 45889999999999999999999999887 566665321 0 0 001 111 11 1
Q ss_pred -----ccChhhhccCCCEEEEecCC-chhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCC
Q psy6348 143 -----SLGLEDIWPLADYITVHTPL-IPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFC 216 (333)
Q Consensus 143 -----~~~l~ell~~aDvV~l~~P~-t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~ 216 (333)
..+++++++++|+|+-++-. +-+++.++++... +.+.-+|..+-.+.- ..+-....+.. .--|.|+
T Consensus 119 ~~~i~~~n~~~~l~~~DvVid~~D~~~~~~r~~l~~~c~---~~~iP~i~~g~~G~~---g~~~~~~p~~~--~~~~~~~ 190 (679)
T PRK14851 119 PAGINADNMDAFLDGVDVVLDGLDFFQFEIRRTLFNMAR---EKGIPVITAGPLGYS---SAMLVFTPQGM--GFDDYFN 190 (679)
T ss_pred ecCCChHHHHHHHhCCCEEEECCCCCcHHHHHHHHHHHH---HCCCCEEEeeccccc---ceEEEEcCCCC--CHhHhcc
Confidence 11356788889988877742 1245556655433 334456655421100 00000111111 0112233
Q ss_pred CCCC---------------CCccchhhcCCCcEEEccCCCCCcHHHHHHHHHHHHHHHHH-hHcCCC
Q psy6348 217 EEPP---------------KSEQTFELIKHPKVIVTPHLGASTKEAQIRVAVEIAEQFIA-LANTNP 267 (333)
Q Consensus 217 ~EP~---------------~~~~~~~L~~~pnvi~TPHi~~~t~ea~~~~~~~~~~~i~~-~~~~~~ 267 (333)
-+|. +.+..+..++..+|-++-+-+-++.-+...++..+..+... ++++++
T Consensus 191 ~~~~~~~~~~~~~~~~g~~p~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (679)
T PRK14851 191 IGGKMPEEQKYLRFAMGLAPRPTHIKYMDLSKVDLKGGKGPSLNIACQLCSGMAGTEAVRIILGKGG 257 (679)
T ss_pred CCCCCChHHHHHHHHhcCCCcchhhccCcHhhcCCccCcCCCccHHHHhhhhhHHHHHHHHhhcCCe
Confidence 3332 01111234466778888888888888888888888888888 556553
No 427
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=93.91 E-value=0.18 Score=51.25 Aligned_cols=69 Identities=25% Similarity=0.251 Sum_probs=51.7
Q ss_pred cCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCC----------------------HHHHHhcCcccc---------
Q psy6348 96 LYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVS----------------------VEDAAKLNIASL--------- 144 (333)
Q Consensus 96 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~----------------------~~~a~~~gv~~~--------- 144 (333)
-.|++|.|||.|.+|...|..|+..|++|+.|+.... .+..++.|++..
T Consensus 139 ~~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~ 218 (467)
T TIGR01318 139 PTGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGRDI 218 (467)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeCCcc
Confidence 3689999999999999999999999999999986431 233456676431
Q ss_pred ChhhhccCCCEEEEecCCch
Q psy6348 145 GLEDIWPLADYITVHTPLIP 164 (333)
Q Consensus 145 ~l~ell~~aDvV~l~~P~t~ 164 (333)
.++++..++|.|++++-..+
T Consensus 219 ~~~~~~~~~D~vilAtGa~~ 238 (467)
T TIGR01318 219 SLDDLLEDYDAVFLGVGTYR 238 (467)
T ss_pred CHHHHHhcCCEEEEEeCCCC
Confidence 33455567999999886543
No 428
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=93.90 E-value=0.17 Score=52.60 Aligned_cols=69 Identities=23% Similarity=0.238 Sum_probs=50.7
Q ss_pred ccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC----------------------CHHHHHhcCcccc--------
Q psy6348 95 ELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV----------------------SVEDAAKLNIASL-------- 144 (333)
Q Consensus 95 ~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~----------------------~~~~a~~~gv~~~-------- 144 (333)
.-.|++|.|||.|.+|...|..|+..|++|+++|+.. ..+.++++|+...
T Consensus 134 ~~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~~~ 213 (564)
T PRK12771 134 PDTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVGED 213 (564)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEECCc
Confidence 3469999999999999999999999999999998532 1133456676421
Q ss_pred -ChhhhccCCCEEEEecCCc
Q psy6348 145 -GLEDIWPLADYITVHTPLI 163 (333)
Q Consensus 145 -~l~ell~~aDvV~l~~P~t 163 (333)
+.+++-...|+|++++-..
T Consensus 214 ~~~~~~~~~~D~Vi~AtG~~ 233 (564)
T PRK12771 214 ITLEQLEGEFDAVFVAIGAQ 233 (564)
T ss_pred CCHHHHHhhCCEEEEeeCCC
Confidence 2333445689999988643
No 429
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=93.80 E-value=0.34 Score=50.54 Aligned_cols=36 Identities=17% Similarity=0.187 Sum_probs=32.4
Q ss_pred cCCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348 96 LYGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMV 131 (333)
Q Consensus 96 l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~ 131 (333)
-.||++.|.|. |.||+.+++.|...|++|+++++..
T Consensus 78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ 114 (576)
T PLN03209 78 KDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSA 114 (576)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 35789999997 9999999999999999999998865
No 430
>PRK06392 homoserine dehydrogenase; Provisional
Probab=93.77 E-value=0.24 Score=48.13 Aligned_cols=107 Identities=18% Similarity=0.330 Sum_probs=62.4
Q ss_pred EEEEEecChHHHHHHHHHhh--------CCCEEEE-EcCCC--------CHHHH---HhcC-c-----cccChhhhc-cC
Q psy6348 100 TLAVLGLGRIGREVALRMQA--------FGMKVIG-FDPMV--------SVEDA---AKLN-I-----ASLGLEDIW-PL 152 (333)
Q Consensus 100 tvGIIGlG~IG~~vA~~l~~--------~G~~V~~-~d~~~--------~~~~a---~~~g-v-----~~~~l~ell-~~ 152 (333)
+|+|+|||.||+.+++.+.. ++.+|.+ +|+.. ..+.. .+.| + ...++++++ .+
T Consensus 2 rVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~~~ 81 (326)
T PRK06392 2 RISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFEIK 81 (326)
T ss_pred EEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhcCC
Confidence 79999999999999998865 5667655 34432 11111 1101 1 112455553 46
Q ss_pred CCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCccc-chHhHHhhhhcCCc
Q psy6348 153 ADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIV-DENALLDSLKCGHC 207 (333)
Q Consensus 153 aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~v-d~~aL~~aL~~g~i 207 (333)
+|+|+=|+|... +-.-.-....+.|+.|.-+|-..-|.+. ..+.|.++.+++..
T Consensus 82 ~DVvVE~t~~~~-~g~~~~~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g~ 136 (326)
T PRK06392 82 PDVIVDVTPASK-DGIREKNLYINAFEHGIDVVTANKSGLANHWHDIMDSASKNRR 136 (326)
T ss_pred CCEEEECCCCCC-cCchHHHHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcCC
Confidence 899999987432 1000112234556788888888777664 34556666555543
No 431
>PRK13529 malate dehydrogenase; Provisional
Probab=93.76 E-value=2.6 Score=43.79 Aligned_cols=193 Identities=15% Similarity=0.152 Sum_probs=120.2
Q ss_pred hhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCCCEEEEEecChHHHHHHHHHhh--
Q psy6348 42 TRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQA-- 119 (333)
Q Consensus 42 ~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~-- 119 (333)
-+..|+++|+.- ..+|--+++-+++..|- .|..|...++.|.|.|..|..+|+.+..
T Consensus 260 yr~~i~~FnDDi---QGTaaV~LAgll~A~r~------------------~g~~l~d~riv~~GAGsAgiGia~ll~~~~ 318 (563)
T PRK13529 260 YRDEICTFNDDI---QGTGAVTLAGLLAALKI------------------TGEPLSDQRIVFLGAGSAGCGIADQIVAAM 318 (563)
T ss_pred hccCCCeecccc---chHHHHHHHHHHHHHHH------------------hCCChhhcEEEEECCCHHHHHHHHHHHHHH
Confidence 345799999853 45566688888888772 3567888999999999999999998876
Q ss_pred --CCC-------EEEEEcCCC----C---HH-----HHHhcC-c-------cccChhhhccCC--CEEEEecCCchhhHh
Q psy6348 120 --FGM-------KVIGFDPMV----S---VE-----DAAKLN-I-------ASLGLEDIWPLA--DYITVHTPLIPQTKN 168 (333)
Q Consensus 120 --~G~-------~V~~~d~~~----~---~~-----~a~~~g-v-------~~~~l~ell~~a--DvV~l~~P~t~~t~~ 168 (333)
.|+ +++.+|+.- + .. .++... . ...+|.|+++.+ |+++=+- ..-+
T Consensus 319 ~~~Gl~~eeA~~~i~~vD~~GLl~~~r~~l~~~k~~fa~~~~~~~~~~~~~~~~~L~e~v~~~kPtvLIG~S----~~~g 394 (563)
T PRK13529 319 VREGLSEEEARKRFFMVDRQGLLTDDMPDLLDFQKPYARKREELADWDTEGDVISLLEVVRNVKPTVLIGVS----GQPG 394 (563)
T ss_pred HHcCCChhHhcCeEEEEcCCCeEeCCCCcchHHHHHHhhhcccccccccccCCCCHHHHHhccCCCEEEEec----CCCC
Confidence 688 788888652 1 11 111110 0 113789999988 9887642 2357
Q ss_pred hccHHHHhccCC---CcEEEEccCCcccchHhHHhhhh--cCC-ceEEEeccCCCCCCC-CccchhhcCCCcEEEccCCC
Q psy6348 169 LINAEVLKKCKK---GVRVVNVARGGIVDENALLDSLK--CGH-CGGAALDVFCEEPPK-SEQTFELIKHPKVIVTPHLG 241 (333)
Q Consensus 169 li~~~~~~~mk~---gailIN~aRg~~vd~~aL~~aL~--~g~-i~gaalDV~~~EP~~-~~~~~~L~~~pnvi~TPHi~ 241 (333)
.|.++.++.|.+ ..+|.=.|....-.|-.-.+|.+ .|+ |.+.+.-. .|.. ......-=+.-|+++-|=++
T Consensus 395 ~Ft~evv~~Ma~~~erPIIFaLSNPt~~aE~tpe~a~~~T~Grai~AtGspf---~pv~~~G~~~~p~Q~NN~~iFPGig 471 (563)
T PRK13529 395 AFTEEIVKEMAAHCERPIIFPLSNPTSRAEATPEDLIAWTDGRALVATGSPF---APVEYNGKTYPIGQCNNAYIFPGLG 471 (563)
T ss_pred CCCHHHHHHHHhcCCCCEEEECCCcCCCcccCHHHHHHhhcCCEEEEECCCC---CCeeeCCeEeccCcCcceeecccch
Confidence 899999999987 89999999877644443344444 354 43333321 1100 00000112567999999886
Q ss_pred CCc-----HHHHHHHHHHHHHHHHHh
Q psy6348 242 AST-----KEAQIRVAVEIAEQFIAL 262 (333)
Q Consensus 242 ~~t-----~ea~~~~~~~~~~~i~~~ 262 (333)
=-. ..--+.|...+++.+.++
T Consensus 472 lGa~~~~a~~Itd~m~~aAA~alA~~ 497 (563)
T PRK13529 472 LGVIASGARRVTDGMLMAAAHALADC 497 (563)
T ss_pred hhhhhcCCcCCCHHHHHHHHHHHHhh
Confidence 211 111234455555555553
No 432
>PRK10537 voltage-gated potassium channel; Provisional
Probab=93.68 E-value=0.27 Score=49.00 Aligned_cols=85 Identities=14% Similarity=0.077 Sum_probs=54.2
Q ss_pred CCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCcccc-----C---hhh-hccCCCEEEEecCCchhhHh
Q psy6348 98 GKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASL-----G---LED-IWPLADYITVHTPLIPQTKN 168 (333)
Q Consensus 98 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~-----~---l~e-ll~~aDvV~l~~P~t~~t~~ 168 (333)
..++-|+|+|++|+.+++.|++.|.++++.|+.. .+.....+...+ + |++ -+++|+.|+++++..+++.-
T Consensus 240 k~HvII~G~g~lg~~v~~~L~~~g~~vvVId~d~-~~~~~~~g~~vI~GD~td~e~L~~AgI~~A~aVI~~t~dD~~Nl~ 318 (393)
T PRK10537 240 KDHFIICGHSPLAINTYLGLRQRGQAVTVIVPLG-LEHRLPDDADLIPGDSSDSAVLKKAGAARARAILALRDNDADNAF 318 (393)
T ss_pred CCeEEEECCChHHHHHHHHHHHCCCCEEEEECch-hhhhccCCCcEEEeCCCCHHHHHhcCcccCCEEEEcCCChHHHHH
Confidence 5689999999999999999999999998888753 222333343221 1 222 25688999888875444333
Q ss_pred hccHHHHhccCCCcEEE
Q psy6348 169 LINAEVLKKCKKGVRVV 185 (333)
Q Consensus 169 li~~~~~~~mk~gailI 185 (333)
. -...+.+.|+..+|
T Consensus 319 i--vL~ar~l~p~~kII 333 (393)
T PRK10537 319 V--VLAAKEMSSDVKTV 333 (393)
T ss_pred H--HHHHHHhCCCCcEE
Confidence 2 23344455544433
No 433
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=93.63 E-value=0.38 Score=45.50 Aligned_cols=88 Identities=25% Similarity=0.256 Sum_probs=59.0
Q ss_pred CCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCC-HHHHHhcCcccc-Ch-h-----hhccCCCEEEEecCCchhhHh
Q psy6348 97 YGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVS-VEDAAKLNIASL-GL-E-----DIWPLADYITVHTPLIPQTKN 168 (333)
Q Consensus 97 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~gv~~~-~l-~-----ell~~aDvV~l~~P~t~~t~~ 168 (333)
.|.++.|.|.|.+|+.+++.++++|.+|++.++... .+..++.|.... .. + ..-...|+++-++....
T Consensus 162 ~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~---- 237 (330)
T cd08245 162 PGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVTVVSGA---- 237 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEECCCcHH----
Confidence 478999999999999999999999999999887652 233444554211 10 0 11235788877654211
Q ss_pred hccHHHHhccCCCcEEEEccC
Q psy6348 169 LINAEVLKKCKKGVRVVNVAR 189 (333)
Q Consensus 169 li~~~~~~~mk~gailIN~aR 189 (333)
...+.+..|+++..+++++.
T Consensus 238 -~~~~~~~~l~~~G~~i~~~~ 257 (330)
T cd08245 238 -AAEAALGGLRRGGRIVLVGL 257 (330)
T ss_pred -HHHHHHHhcccCCEEEEECC
Confidence 22555677888888888853
No 434
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=93.61 E-value=0.15 Score=49.41 Aligned_cols=97 Identities=23% Similarity=0.270 Sum_probs=58.8
Q ss_pred CEEEEEec-ChHHHHHHHHHhhCCC-------EEEEEcCCCC----HHHHHhc---------Cccc-cChhhhccCCCEE
Q psy6348 99 KTLAVLGL-GRIGREVALRMQAFGM-------KVIGFDPMVS----VEDAAKL---------NIAS-LGLEDIWPLADYI 156 (333)
Q Consensus 99 ktvGIIGl-G~IG~~vA~~l~~~G~-------~V~~~d~~~~----~~~a~~~---------gv~~-~~l~ell~~aDvV 156 (333)
.||+|||. |.+|+.+|..+...|. ++..+|.... ...+.++ ++.. .+..+.+++||+|
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDvV 83 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKDVDAA 83 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhCCCCEE
Confidence 38999998 9999999998887665 7999998431 1122111 0111 1345889999999
Q ss_pred EEecCCc--h-hhHhh-c--cH-------HHHhccC-CCcEEEEccCCcccchHh
Q psy6348 157 TVHTPLI--P-QTKNL-I--NA-------EVLKKCK-KGVRVVNVARGGIVDENA 197 (333)
Q Consensus 157 ~l~~P~t--~-~t~~l-i--~~-------~~~~~mk-~gailIN~aRg~~vd~~a 197 (333)
+++.-.. + +|+-- + +. +.+.... |++++|.++ .++|.-.
T Consensus 84 VitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs--NPvDv~t 136 (323)
T TIGR01759 84 LLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVG--NPANTNA 136 (323)
T ss_pred EEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC--CcHHHHH
Confidence 9986431 1 22221 1 11 1223333 488999886 4454443
No 435
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=93.61 E-value=0.21 Score=52.92 Aligned_cols=67 Identities=21% Similarity=0.224 Sum_probs=50.2
Q ss_pred CCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCC----------------------HHHHHhcCcccc---------C
Q psy6348 97 YGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVS----------------------VEDAAKLNIASL---------G 145 (333)
Q Consensus 97 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~----------------------~~~a~~~gv~~~---------~ 145 (333)
.+|+|.|||.|..|...|..|+..|++|++|++... .+...+.|++.. +
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~~dv~ 271 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFGRDIT 271 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCcccCccC
Confidence 578999999999999999999999999999986431 123345565431 3
Q ss_pred hhhhccCCCEEEEecCCc
Q psy6348 146 LEDIWPLADYITVHTPLI 163 (333)
Q Consensus 146 l~ell~~aDvV~l~~P~t 163 (333)
++++....|.|++++-..
T Consensus 272 ~~~~~~~~DaVilAtGa~ 289 (652)
T PRK12814 272 LEELQKEFDAVLLAVGAQ 289 (652)
T ss_pred HHHHHhhcCEEEEEcCCC
Confidence 455556799999987643
No 436
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=93.58 E-value=1.5 Score=42.10 Aligned_cols=99 Identities=19% Similarity=0.123 Sum_probs=64.5
Q ss_pred hHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCCCEEEEEecC-hHHHHHHHHHh
Q psy6348 40 AATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLG-RIGREVALRMQ 118 (333)
Q Consensus 40 aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIGlG-~IG~~vA~~l~ 118 (333)
.+..-+|+|+|.-+....++- +++=++.+.++ .| .+.|+||++||=+ ++..+++..+.
T Consensus 110 ~a~~~~vPVINa~~~~~HPtQ--aL~Dl~Ti~e~------------------~g-~l~g~kva~vGD~~~v~~S~~~~~~ 168 (302)
T PRK14805 110 LAEHGSVPVINALCDLYHPCQ--ALADFLTLAEQ------------------FG-DVSKVKLAYVGDGNNVTHSLMYGAA 168 (302)
T ss_pred HHHhCCCCEEECCCCCCChHH--HHHHHHHHHHH------------------hC-CcCCcEEEEEcCCCccHHHHHHHHH
Confidence 345578999999765544443 33333333221 12 3789999999974 67788888899
Q ss_pred hCCCEEEEEcCCC---CHH-------HHHhcCccc--c-ChhhhccCCCEEEEec
Q psy6348 119 AFGMKVIGFDPMV---SVE-------DAAKLNIAS--L-GLEDIWPLADYITVHT 160 (333)
Q Consensus 119 ~~G~~V~~~d~~~---~~~-------~a~~~gv~~--~-~l~ell~~aDvV~l~~ 160 (333)
.+|++|....|.. ..+ .+++.|... . ++ +.++++|+|..-.
T Consensus 169 ~~g~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~d~-~a~~~aDvvy~~~ 222 (302)
T PRK14805 169 ILGATMTVICPPGHFPDGQIVAEAQELAAKSGGKLVLTSDI-EAIEGHDAIYTDT 222 (302)
T ss_pred HcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCEEEEEcCH-HHHCCCCEEEeec
Confidence 9999999988754 111 123346543 2 54 5789999998843
No 437
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=93.57 E-value=0.28 Score=47.52 Aligned_cols=45 Identities=24% Similarity=0.333 Sum_probs=36.7
Q ss_pred CCCEEEEEecChHHHHHHHHHhhCCCE-EEEEcCCC-CHHHHHhcCc
Q psy6348 97 YGKTLAVLGLGRIGREVALRMQAFGMK-VIGFDPMV-SVEDAAKLNI 141 (333)
Q Consensus 97 ~gktvGIIGlG~IG~~vA~~l~~~G~~-V~~~d~~~-~~~~a~~~gv 141 (333)
.|+++.|.|.|.+|...++.++.+|.+ |++.++.. ..+.++++|.
T Consensus 176 ~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga 222 (358)
T TIGR03451 176 RGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGA 222 (358)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCC
Confidence 488999999999999999999999985 98888765 3345556664
No 438
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=93.56 E-value=0.098 Score=46.85 Aligned_cols=63 Identities=21% Similarity=0.339 Sum_probs=43.1
Q ss_pred CEEEEEecChHHHHHHH--HHhhCCCEEE-EEcCCCCHHHHHh-cCcccc---Chhhhcc--CCCEEEEecCC
Q psy6348 99 KTLAVLGLGRIGREVAL--RMQAFGMKVI-GFDPMVSVEDAAK-LNIASL---GLEDIWP--LADYITVHTPL 162 (333)
Q Consensus 99 ktvGIIGlG~IG~~vA~--~l~~~G~~V~-~~d~~~~~~~a~~-~gv~~~---~l~ell~--~aDvV~l~~P~ 162 (333)
-++.|||.|++|++++. ..+..||++. +||-.++. ...+ .++... ++++.++ +.|+.++|+|.
T Consensus 85 tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~-VG~~~~~v~V~~~d~le~~v~~~dv~iaiLtVPa 156 (211)
T COG2344 85 TNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDK-VGTKIGDVPVYDLDDLEKFVKKNDVEIAILTVPA 156 (211)
T ss_pred eeEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHH-hCcccCCeeeechHHHHHHHHhcCccEEEEEccH
Confidence 46999999999999984 4567899865 47765431 1111 233332 4666676 68999999994
No 439
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=93.53 E-value=0.31 Score=46.23 Aligned_cols=86 Identities=23% Similarity=0.143 Sum_probs=55.6
Q ss_pred CCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHhcCcccc-------Chhhhc-----cCCCEEEEecCC
Q psy6348 97 YGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMV-SVEDAAKLNIASL-------GLEDIW-----PLADYITVHTPL 162 (333)
Q Consensus 97 ~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~gv~~~-------~l~ell-----~~aDvV~l~~P~ 162 (333)
.|.+|.|.|. |.+|...++.++.+|.+|++.++.. ..+.++++|+..+ ++.+.+ ...|+++-++..
T Consensus 138 ~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~gvdvv~d~~G~ 217 (325)
T TIGR02825 138 GGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKKLGFDVAFNYKTVKSLEETLKKASPDGYDCYFDNVGG 217 (325)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeccccccHHHHHHHhCCCCeEEEEECCCH
Confidence 5789999995 9999999999999999999887754 3345556665321 111111 135666655531
Q ss_pred chhhHhhccHHHHhccCCCcEEEEcc
Q psy6348 163 IPQTKNLINAEVLKKCKKGVRVVNVA 188 (333)
Q Consensus 163 t~~t~~li~~~~~~~mk~gailIN~a 188 (333)
.. + ...++.++++..+|.++
T Consensus 218 ----~~-~-~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 218 ----EF-S-NTVIGQMKKFGRIAICG 237 (325)
T ss_pred ----HH-H-HHHHHHhCcCcEEEEec
Confidence 11 1 44566677777777664
No 440
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=93.51 E-value=0.42 Score=44.01 Aligned_cols=89 Identities=28% Similarity=0.245 Sum_probs=59.8
Q ss_pred CCCEEEEEecChHHHHHHHHHhhCCCE-EEEEcCCC-CHHHHHhcC-ccc-cChh-hh--ccCCCEEEEecCCchhhHhh
Q psy6348 97 YGKTLAVLGLGRIGREVALRMQAFGMK-VIGFDPMV-SVEDAAKLN-IAS-LGLE-DI--WPLADYITVHTPLIPQTKNL 169 (333)
Q Consensus 97 ~gktvGIIGlG~IG~~vA~~l~~~G~~-V~~~d~~~-~~~~a~~~g-v~~-~~l~-el--l~~aDvV~l~~P~t~~t~~l 169 (333)
.|.++.|.|.|.+|..+++.++++|.+ |++.++.. ..+.+++.| ... .... .. -...|+++-++....
T Consensus 97 ~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~vl~~~~~~~----- 171 (277)
T cd08255 97 LGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPADPVAADTADEIGGRGADVVIEASGSPS----- 171 (277)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCCCccccccchhhhcCCCCCEEEEccCChH-----
Confidence 578999999999999999999999999 99888754 234445556 211 1111 11 135788887665221
Q ss_pred ccHHHHhccCCCcEEEEccCC
Q psy6348 170 INAEVLKKCKKGVRVVNVARG 190 (333)
Q Consensus 170 i~~~~~~~mk~gailIN~aRg 190 (333)
.-...+..++++..+++++-.
T Consensus 172 ~~~~~~~~l~~~g~~~~~g~~ 192 (277)
T cd08255 172 ALETALRLLRDRGRVVLVGWY 192 (277)
T ss_pred HHHHHHHHhcCCcEEEEEecc
Confidence 124556778888888887643
No 441
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=93.44 E-value=0.16 Score=38.35 Aligned_cols=32 Identities=28% Similarity=0.355 Sum_probs=29.2
Q ss_pred EEEEEecChHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348 100 TLAVLGLGRIGREVALRMQAFGMKVIGFDPMV 131 (333)
Q Consensus 100 tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~ 131 (333)
++.|||.|.+|-.+|..++.+|.+|..+++..
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~ 32 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSD 32 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccc
Confidence 58899999999999999999999999987654
No 442
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=93.43 E-value=0.41 Score=46.48 Aligned_cols=88 Identities=19% Similarity=0.211 Sum_probs=54.4
Q ss_pred cCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HH-HHhcCcccc----C---hhhhccCCCEEEEecCCchhh
Q psy6348 96 LYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-ED-AAKLNIASL----G---LEDIWPLADYITVHTPLIPQT 166 (333)
Q Consensus 96 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~-a~~~gv~~~----~---l~ell~~aDvV~l~~P~t~~t 166 (333)
..|.++.|.|.|.+|...++.++..|.+|++.++.... .. .+++|+... + +.++....|+++-+++...
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~D~vid~~g~~~-- 256 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEHLGADDYLVSSDAAEMQEAADSLDYIIDTVPVFH-- 256 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhcCCcEEecCCChHHHHHhcCCCcEEEECCCchH--
Confidence 36889999999999999999999999999888765422 12 234565321 1 1122234566666654211
Q ss_pred HhhccHHHHhccCCCcEEEEcc
Q psy6348 167 KNLINAEVLKKCKKGVRVVNVA 188 (333)
Q Consensus 167 ~~li~~~~~~~mk~gailIN~a 188 (333)
.-...+..++++..++.++
T Consensus 257 ---~~~~~~~~l~~~G~iv~~G 275 (357)
T PLN02514 257 ---PLEPYLSLLKLDGKLILMG 275 (357)
T ss_pred ---HHHHHHHHhccCCEEEEEC
Confidence 1123445566666666664
No 443
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=93.43 E-value=0.4 Score=45.70 Aligned_cols=45 Identities=22% Similarity=0.343 Sum_probs=36.8
Q ss_pred CCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHhcCc
Q psy6348 97 YGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV-SVEDAAKLNI 141 (333)
Q Consensus 97 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~gv 141 (333)
.|.++.|.|.|.+|+.+++.++++|.+|++.++.. ..+.++++|+
T Consensus 163 ~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~g~ 208 (333)
T cd08296 163 PGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLARKLGA 208 (333)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcCC
Confidence 57899999999999999999999999999988764 3344455554
No 444
>PLN02740 Alcohol dehydrogenase-like
Probab=93.38 E-value=0.37 Score=47.22 Aligned_cols=45 Identities=36% Similarity=0.558 Sum_probs=37.0
Q ss_pred CCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC-CHHHHHhcCc
Q psy6348 97 YGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV-SVEDAAKLNI 141 (333)
Q Consensus 97 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~~gv 141 (333)
.|++|.|+|.|.+|...++.++.+|. +|++.|+.. ..+.++++|+
T Consensus 198 ~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga 244 (381)
T PLN02740 198 AGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGI 244 (381)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcCC
Confidence 58899999999999999999999999 699988765 3345555554
No 445
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=93.36 E-value=0.15 Score=45.78 Aligned_cols=64 Identities=16% Similarity=0.087 Sum_probs=48.0
Q ss_pred CEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCc--------cccChhhhccCCCEEEEecCCc
Q psy6348 99 KTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNI--------ASLGLEDIWPLADYITVHTPLI 163 (333)
Q Consensus 99 ktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv--------~~~~l~ell~~aDvV~l~~P~t 163 (333)
+||+|||. |.+|+.+++-++..|++|.+.-|+.+.-.+. .++ ...++.+.+..-|+|+.+.-..
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~-~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~~ 73 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAAR-QGVTILQKDIFDLTSLASDLAGHDAVISAFGAG 73 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhcccc-ccceeecccccChhhhHhhhcCCceEEEeccCC
Confidence 58999998 9999999999999999999998766443221 222 1224557888999999886533
No 446
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=93.36 E-value=0.25 Score=47.32 Aligned_cols=87 Identities=14% Similarity=0.208 Sum_probs=54.5
Q ss_pred EEecChHHHHHHHHHhhCCC--EEEEEcCCCCHHHHHhcC-----------cccc-ChhhhccCCCEEEEecCC--ch-h
Q psy6348 103 VLGLGRIGREVALRMQAFGM--KVIGFDPMVSVEDAAKLN-----------IASL-GLEDIWPLADYITVHTPL--IP-Q 165 (333)
Q Consensus 103 IIGlG~IG~~vA~~l~~~G~--~V~~~d~~~~~~~a~~~g-----------v~~~-~l~ell~~aDvV~l~~P~--t~-~ 165 (333)
|||.|.||..+|..+...+. ++..||..........+. +... .-.+.+++||+|+++.-. .+ .
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDivVitag~~rk~g~ 80 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKDADLVVITAGAPQKPGE 80 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCCCCEEEECCCCCCCCCC
Confidence 69999999999998876665 799999865432222211 1111 334789999999997543 11 1
Q ss_pred hH--------hhcc--HHHHhccCCCcEEEEccC
Q psy6348 166 TK--------NLIN--AEVLKKCKKGVRVVNVAR 189 (333)
Q Consensus 166 t~--------~li~--~~~~~~mk~gailIN~aR 189 (333)
++ .++. .+.+....+.+++|+++-
T Consensus 81 ~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsN 114 (299)
T TIGR01771 81 TRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATN 114 (299)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 11 1111 122334568899999873
No 447
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=93.33 E-value=0.37 Score=45.99 Aligned_cols=92 Identities=21% Similarity=0.234 Sum_probs=59.8
Q ss_pred cccCCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC-CHHH-----------------------HHhcC--cc--cc
Q psy6348 94 TELYGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV-SVED-----------------------AAKLN--IA--SL 144 (333)
Q Consensus 94 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~-----------------------a~~~g--v~--~~ 144 (333)
..|...+|.|+|+|.+|.++|+.|...|. ++..+|+.. .... .+++. +. ..
T Consensus 15 ~kL~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLNp~V~V~~~ 94 (286)
T cd01491 15 KKLQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELNPYVPVTVS 94 (286)
T ss_pred HHHhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHCCCCEEEEE
Confidence 45889999999999999999999999998 588888654 1110 01111 11 11
Q ss_pred --C-hhhhccCCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccC
Q psy6348 145 --G-LEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVAR 189 (333)
Q Consensus 145 --~-l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aR 189 (333)
. .++.+.+.|+|+.+.- +.+++..+++-..+ .+.-+|.++.
T Consensus 95 ~~~~~~~~l~~fdvVV~~~~-~~~~~~~in~~c~~---~~ipfI~a~~ 138 (286)
T cd01491 95 TGPLTTDELLKFQVVVLTDA-SLEDQLKINEFCHS---PGIKFISADT 138 (286)
T ss_pred eccCCHHHHhcCCEEEEecC-CHHHHHHHHHHHHH---cCCEEEEEec
Confidence 1 2467889998887754 55566566554433 4555666543
No 448
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=93.33 E-value=0.47 Score=47.16 Aligned_cols=93 Identities=25% Similarity=0.346 Sum_probs=65.4
Q ss_pred ccccCCCEEEEEec---ChH-------HHHHHHHHhhCCCEEEEEcCCCCHHH--HHhcCccccChhhhccCCCEEEEec
Q psy6348 93 GTELYGKTLAVLGL---GRI-------GREVALRMQAFGMKVIGFDPMVSVED--AAKLNIASLGLEDIWPLADYITVHT 160 (333)
Q Consensus 93 g~~l~gktvGIIGl---G~I-------G~~vA~~l~~~G~~V~~~d~~~~~~~--a~~~gv~~~~l~ell~~aDvV~l~~ 160 (333)
+..+.|.+|.|+|+ |.+ ...+.+.+...|.+|.+|||+.+.-. ....+++..++++.++.+|+|++.+
T Consensus 317 ~k~~~~skIlvlGlayK~dvdD~ReSPa~~ii~~l~~~g~~v~~~DP~v~~~~~~~~~~~~~~~~~e~al~~~D~vVi~t 396 (436)
T COG0677 317 GKPLSGSKILVLGLAYKGDVDDLRESPALDIIELLEEWGGEVLVYDPYVKELPTREDGEGVTLAILEEALKDADAVVIAT 396 (436)
T ss_pred CCCCcCceEEEEEeeecCCCcccccCchHHHHHHHHHhCCeEEEECCCCCcchhhhhccccchhhHHHHhccCCEEEEEe
Confidence 56788999999998 444 34578889999999999999986422 2233345568999999999999986
Q ss_pred CCchhhHhhccHHHHhccCCCcEEEEccCC
Q psy6348 161 PLIPQTKNLINAEVLKKCKKGVRVVNVARG 190 (333)
Q Consensus 161 P~t~~t~~li~~~~~~~mk~gailIN~aRg 190 (333)
- .++ ...++.+.+..+ ..+++++ |+
T Consensus 397 D-H~~-fk~id~~~i~~~--~~vivDt-rn 421 (436)
T COG0677 397 D-HSE-FKEIDYEAIGKE--AKVIVDT-RN 421 (436)
T ss_pred c-cHH-hhcCCHHHhccC--CcEEEEC-cc
Confidence 3 112 124666666544 4566665 44
No 449
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.25 E-value=0.14 Score=49.58 Aligned_cols=97 Identities=18% Similarity=0.239 Sum_probs=58.7
Q ss_pred CEEEEEec-ChHHHHHHHHHhhCCC-------EEEEEcCCC--CHHHHHhc-----------Cccc-cChhhhccCCCEE
Q psy6348 99 KTLAVLGL-GRIGREVALRMQAFGM-------KVIGFDPMV--SVEDAAKL-----------NIAS-LGLEDIWPLADYI 156 (333)
Q Consensus 99 ktvGIIGl-G~IG~~vA~~l~~~G~-------~V~~~d~~~--~~~~a~~~-----------gv~~-~~l~ell~~aDvV 156 (333)
.+|+|+|. |.||+.+|..|...|. ++..+|... .......+ ++.. .+..+.+++||+|
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDiV 80 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVA 80 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCEE
Confidence 37999999 9999999998876443 588899865 22111111 1111 2456889999999
Q ss_pred EEecCC--ch-hhHh--------hcc--HHHHhcc-CCCcEEEEccCCcccchHh
Q psy6348 157 TVHTPL--IP-QTKN--------LIN--AEVLKKC-KKGVRVVNVARGGIVDENA 197 (333)
Q Consensus 157 ~l~~P~--t~-~t~~--------li~--~~~~~~m-k~gailIN~aRg~~vd~~a 197 (333)
+++.-. .+ +|+- ++. .+.+... ++++++|.++ .++|.-.
T Consensus 81 VitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t 133 (323)
T cd00704 81 ILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVG--NPANTNA 133 (323)
T ss_pred EEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeC--CcHHHHH
Confidence 987532 22 1221 110 1123334 5788888885 5555444
No 450
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=93.22 E-value=0.35 Score=46.75 Aligned_cols=77 Identities=13% Similarity=0.214 Sum_probs=50.1
Q ss_pred CEEEEEec-ChHHHHHHHHHhhCC-CEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhccHHHHh
Q psy6348 99 KTLAVLGL-GRIGREVALRMQAFG-MKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLK 176 (333)
Q Consensus 99 ktvGIIGl-G~IG~~vA~~l~~~G-~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~ 176 (333)
.+|+|||. |.+|+++.+.|.... +++.......... . .+.++.++++|++++++|.. ....+. .+.
T Consensus 3 ~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~~------~--~~~~~~~~~~DvvFlalp~~-~s~~~~-~~~-- 70 (313)
T PRK11863 3 PKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRKD------A--AARRELLNAADVAILCLPDD-AAREAV-ALI-- 70 (313)
T ss_pred cEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCCc------c--cCchhhhcCCCEEEECCCHH-HHHHHH-HHH--
Confidence 48999996 999999999998654 3555443322111 1 23456667899999999932 222221 222
Q ss_pred ccCCCcEEEEcc
Q psy6348 177 KCKKGVRVVNVA 188 (333)
Q Consensus 177 ~mk~gailIN~a 188 (333)
.+.|..+||.|
T Consensus 71 -~~~g~~VIDlS 81 (313)
T PRK11863 71 -DNPATRVIDAS 81 (313)
T ss_pred -HhCCCEEEECC
Confidence 25789999987
No 451
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=93.22 E-value=0.48 Score=44.64 Aligned_cols=86 Identities=21% Similarity=0.130 Sum_probs=56.7
Q ss_pred CCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHhcCcccc-Chhhhc--cCCCEEEEecCCchhhHhhccH
Q psy6348 97 YGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV-SVEDAAKLNIASL-GLEDIW--PLADYITVHTPLIPQTKNLINA 172 (333)
Q Consensus 97 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~gv~~~-~l~ell--~~aDvV~l~~P~t~~t~~li~~ 172 (333)
.|.++.|.|.|.+|+.+++.++..|.+|++.+... ..+.++++|+... +.++.. ...|+++-++.... . -.
T Consensus 155 ~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~vid~~g~~~---~--~~ 229 (319)
T cd08242 155 PGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKLALARRLGVETVLPDEAESEGGGFDVVVEATGSPS---G--LE 229 (319)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCcEEeCccccccCCCCCEEEECCCChH---H--HH
Confidence 57899999999999999999999999999887754 3344555676432 222211 34677776653211 1 13
Q ss_pred HHHhccCCCcEEEEc
Q psy6348 173 EVLKKCKKGVRVVNV 187 (333)
Q Consensus 173 ~~~~~mk~gailIN~ 187 (333)
..++.++++..++..
T Consensus 230 ~~~~~l~~~g~~v~~ 244 (319)
T cd08242 230 LALRLVRPRGTVVLK 244 (319)
T ss_pred HHHHHhhcCCEEEEE
Confidence 345567777777653
No 452
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=93.13 E-value=0.4 Score=45.68 Aligned_cols=85 Identities=13% Similarity=0.112 Sum_probs=54.4
Q ss_pred CCEEEEEec-ChHHHHHHHHHhhCCC-EEEEEcCCCCH-HHHHh-cCcccc------Chhhhc-----cCCCEEEEecCC
Q psy6348 98 GKTLAVLGL-GRIGREVALRMQAFGM-KVIGFDPMVSV-EDAAK-LNIASL------GLEDIW-----PLADYITVHTPL 162 (333)
Q Consensus 98 gktvGIIGl-G~IG~~vA~~l~~~G~-~V~~~d~~~~~-~~a~~-~gv~~~------~l~ell-----~~aDvV~l~~P~ 162 (333)
|.++.|.|. |.+|....+.++.+|. +|++.++.... +.+++ +|+..+ ++.+.+ ...|+++-++..
T Consensus 155 ~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~~~~gvd~vid~~g~ 234 (345)
T cd08293 155 NQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFDAAINYKTDNVAERLRELCPEGVDVYFDNVGG 234 (345)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHCCCCceEEEECCCc
Confidence 489999998 9999999999999999 89998875432 33333 665321 111111 246777665542
Q ss_pred chhhHhhccHHHHhccCCCcEEEEcc
Q psy6348 163 IPQTKNLINAEVLKKCKKGVRVVNVA 188 (333)
Q Consensus 163 t~~t~~li~~~~~~~mk~gailIN~a 188 (333)
+ . + .+.+..++++..+|.++
T Consensus 235 -~---~-~-~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 235 -E---I-S-DTVISQMNENSHIILCG 254 (345)
T ss_pred -H---H-H-HHHHHHhccCCEEEEEe
Confidence 1 1 1 44566677777777664
No 453
>KOG0024|consensus
Probab=93.08 E-value=0.88 Score=44.15 Aligned_cols=128 Identities=20% Similarity=0.170 Sum_probs=79.2
Q ss_pred CCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC-CHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhccHHH
Q psy6348 97 YGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV-SVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEV 174 (333)
Q Consensus 97 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~ 174 (333)
.|.++.|+|.|.||-..-..++++|. +|++.|... ..+.++++|++.....+-. + ..++.+..+. ..
T Consensus 169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~---~-------~~~~~~~~v~-~~ 237 (354)
T KOG0024|consen 169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHK---S-------SPQELAELVE-KA 237 (354)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeecccc---c-------cHHHHHHHHH-hh
Confidence 58999999999999999999999998 788888876 4577888887654222111 1 0123333332 12
Q ss_pred HhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCccchhhcCCCcEEEccCCC
Q psy6348 175 LKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLG 241 (333)
Q Consensus 175 ~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~L~~~pnvi~TPHi~ 241 (333)
+..-+++ +.++| .|.-+..++-+.+++.|.. ..+=.+..|+.+.|..+ ....++-+++-..
T Consensus 238 ~g~~~~d-~~~dC-sG~~~~~~aai~a~r~gGt--~vlvg~g~~~~~fpi~~--v~~kE~~~~g~fr 298 (354)
T KOG0024|consen 238 LGKKQPD-VTFDC-SGAEVTIRAAIKATRSGGT--VVLVGMGAEEIQFPIID--VALKEVDLRGSFR 298 (354)
T ss_pred ccccCCC-eEEEc-cCchHHHHHHHHHhccCCE--EEEeccCCCccccChhh--hhhheeeeeeeee
Confidence 2212243 56676 4555666666888888876 45555666664443222 1234566666444
No 454
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=93.08 E-value=0.74 Score=46.65 Aligned_cols=100 Identities=16% Similarity=0.309 Sum_probs=62.3
Q ss_pred CEEEEEec-ChHHHHHHHHHhhC-------CC--EEEEEcCCCCHHHHHhcC-----------ccc-cChhhhccCCCEE
Q psy6348 99 KTLAVLGL-GRIGREVALRMQAF-------GM--KVIGFDPMVSVEDAAKLN-----------IAS-LGLEDIWPLADYI 156 (333)
Q Consensus 99 ktvGIIGl-G~IG~~vA~~l~~~-------G~--~V~~~d~~~~~~~a~~~g-----------v~~-~~l~ell~~aDvV 156 (333)
-+|+|||. |.+|..+|-.+... |. +++.+|..........+. +.. .+-.+.+++||+|
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~kdaDiV 180 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQDAEWA 180 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhCcCCEE
Confidence 48999999 99999999888755 44 788889866443332221 111 1345889999999
Q ss_pred EEecCC--ch-hhH--------hhcc--HHHHhc-cCCCcEEEEccCCcccchHhHHh
Q psy6348 157 TVHTPL--IP-QTK--------NLIN--AEVLKK-CKKGVRVVNVARGGIVDENALLD 200 (333)
Q Consensus 157 ~l~~P~--t~-~t~--------~li~--~~~~~~-mk~gailIN~aRg~~vd~~aL~~ 200 (333)
++..-. .+ .++ .++. .+.+.. -.+++++|.++ .++|.-..+-
T Consensus 181 VitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVs--NPvDv~t~v~ 236 (444)
T PLN00112 181 LLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVG--NPCNTNALIC 236 (444)
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcC--CcHHHHHHHH
Confidence 998643 11 111 1111 112333 46789999887 5555555443
No 455
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=93.06 E-value=0.47 Score=46.22 Aligned_cols=45 Identities=36% Similarity=0.411 Sum_probs=36.7
Q ss_pred CCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC-CHHHHHhcCc
Q psy6348 97 YGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV-SVEDAAKLNI 141 (333)
Q Consensus 97 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~~gv 141 (333)
.|.++.|.|.|.+|...++.++.+|. +|++.|+.. ..+.++++|+
T Consensus 185 ~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~Ga 231 (368)
T TIGR02818 185 EGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGA 231 (368)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCC
Confidence 48899999999999999999999999 799988765 3344555554
No 456
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=93.02 E-value=0.28 Score=48.11 Aligned_cols=85 Identities=14% Similarity=0.243 Sum_probs=51.6
Q ss_pred CCEEEEEec-ChHHHHHHHHHh-hCCCE---EEEEcCCCCHHHHHhc---Cccc--cChhhhccCCCEEEEecCCchhhH
Q psy6348 98 GKTLAVLGL-GRIGREVALRMQ-AFGMK---VIGFDPMVSVEDAAKL---NIAS--LGLEDIWPLADYITVHTPLIPQTK 167 (333)
Q Consensus 98 gktvGIIGl-G~IG~~vA~~l~-~~G~~---V~~~d~~~~~~~a~~~---gv~~--~~l~ell~~aDvV~l~~P~t~~t~ 167 (333)
+.+|||||. |.+|+.+.+.|. .-.++ +..+....+....-.+ .... .+.++ +.++|++++++|. ...+
T Consensus 5 ~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~~l~v~~~~~~~-~~~~Divf~a~~~-~~s~ 82 (347)
T PRK06728 5 GYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGREIIIQEAKINS-FEGVDIAFFSAGG-EVSR 82 (347)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCcceEEEeCCHHH-hcCCCEEEECCCh-HHHH
Confidence 468999999 999999999998 45666 4444322211111011 1122 24344 4789999999983 2333
Q ss_pred hhccHHHHhccCCCcEEEEcc
Q psy6348 168 NLINAEVLKKCKKGVRVVNVA 188 (333)
Q Consensus 168 ~li~~~~~~~mk~gailIN~a 188 (333)
.+. .. ..+.|+.+|+.|
T Consensus 83 ~~~-~~---~~~~G~~VID~S 99 (347)
T PRK06728 83 QFV-NQ---AVSSGAIVIDNT 99 (347)
T ss_pred HHH-HH---HHHCCCEEEECc
Confidence 332 11 136789999988
No 457
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=93.00 E-value=5 Score=41.97 Aligned_cols=193 Identities=15% Similarity=0.121 Sum_probs=118.4
Q ss_pred hCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCCCEEEEEecChHHHHHHHHHhh---
Q psy6348 43 RKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQA--- 119 (333)
Q Consensus 43 ~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~--- 119 (333)
+..|+++|+.- ..+|--+++-+++..|- .|..|...++.|+|.|..|..+|+.+..
T Consensus 287 r~~i~~FnDDi---QGTaaV~lAgll~A~r~------------------~g~~l~d~riv~~GAGsAgigia~ll~~~~~ 345 (581)
T PLN03129 287 RTTHLCFNDDI---QGTAAVALAGLLAALRA------------------TGGDLADQRILFAGAGEAGTGIAELIALAMS 345 (581)
T ss_pred ccCCCEecccc---chHHHHHHHHHHHHHHH------------------hCCchhhceEEEECCCHHHHHHHHHHHHHHH
Confidence 45899999853 45666688888888772 3567888999999999999999998876
Q ss_pred --CCC-------EEEEEcCCC-------C-H-----HHHHhcCccccChhhhccC--CCEEEEecCCchhhHhhccHHHH
Q psy6348 120 --FGM-------KVIGFDPMV-------S-V-----EDAAKLNIASLGLEDIWPL--ADYITVHTPLIPQTKNLINAEVL 175 (333)
Q Consensus 120 --~G~-------~V~~~d~~~-------~-~-----~~a~~~gv~~~~l~ell~~--aDvV~l~~P~t~~t~~li~~~~~ 175 (333)
.|+ +++.+|+.- . . ..++. .-...+|.|+++. .|+++=+- ..-+.|.++.+
T Consensus 346 ~~~Gls~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~fa~~-~~~~~~L~e~v~~vkptvLIG~S----~~~g~Ft~evi 420 (581)
T PLN03129 346 RQTGISEEEARKRIWLVDSKGLVTKSRKDSLQPFKKPFAHD-HEPGASLLEAVKAIKPTVLIGLS----GVGGTFTKEVL 420 (581)
T ss_pred hhcCCChhhhcCcEEEEcCCCeEeCCCCccChHHHHHHHhh-cccCCCHHHHHhccCCCEEEEec----CCCCCCCHHHH
Confidence 476 788888542 1 1 11111 1123489999998 89888653 22478999999
Q ss_pred hccC---CCcEEEEccCCcccchHhHHhhhh--cCC-ceEEEeccCCCCCCCCccchhhcCCCcEEEccCCCCCc-----
Q psy6348 176 KKCK---KGVRVVNVARGGIVDENALLDSLK--CGH-CGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGAST----- 244 (333)
Q Consensus 176 ~~mk---~gailIN~aRg~~vd~~aL~~aL~--~g~-i~gaalDV~~~EP~~~~~~~~L~~~pnvi~TPHi~~~t----- 244 (333)
+.|. +..+|.=.|...--.|-.-.+|.+ +|+ |.+.+. -|.+---... ...-=+.-|+++-|-++=-.
T Consensus 421 ~~Ma~~~~rPIIFaLSNPt~~~E~~pe~a~~~T~G~ai~AtGS-Pf~pv~~~Gr-~~~p~Q~NN~~iFPGiglGal~~~a 498 (581)
T PLN03129 421 EAMASLNERPIIFALSNPTSKAECTAEEAYTWTGGRAIFASGS-PFDPVEYNGK-TFHPGQANNAYIFPGIGLGALLSGA 498 (581)
T ss_pred HHHHhcCCCCEEEECCCCCCCcCcCHHHHHHhhcCCEEEEeCC-CCCCeeeCCe-eecCccccceeeccchhhHHHhcCC
Confidence 9995 889999888765323322222322 355 332222 1111000000 00112567999999886211
Q ss_pred HHHHHHHHHHHHHHHHHhH
Q psy6348 245 KEAQIRVAVEIAEQFIALA 263 (333)
Q Consensus 245 ~ea~~~~~~~~~~~i~~~~ 263 (333)
..--+.|-..+++.+.++.
T Consensus 499 ~~Itd~m~~aAA~aLA~~v 517 (581)
T PLN03129 499 IRVTDDMLLAAAEALAAQV 517 (581)
T ss_pred cCCCHHHHHHHHHHHHHhC
Confidence 1122345555666666543
No 458
>PRK14852 hypothetical protein; Provisional
Probab=92.97 E-value=1.2 Score=49.13 Aligned_cols=165 Identities=15% Similarity=0.109 Sum_probs=91.0
Q ss_pred cccCCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC-C------------------H-H----HHHhcC--c--c--
Q psy6348 94 TELYGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV-S------------------V-E----DAAKLN--I--A-- 142 (333)
Q Consensus 94 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~------------------~-~----~a~~~g--v--~-- 142 (333)
..|..++|+|||+|.+|+.+|..|...|. ++...|... . + + ..++.+ + +
T Consensus 328 ~kL~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP~v~I~~~ 407 (989)
T PRK14852 328 RRLLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNPFLDIRSF 407 (989)
T ss_pred HHHhcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHCCCCeEEEE
Confidence 35889999999999999999999999887 566655221 0 0 0 011111 1 1
Q ss_pred -----ccChhhhccCCCEEEEecCCc-hhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCC
Q psy6348 143 -----SLGLEDIWPLADYITVHTPLI-PQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFC 216 (333)
Q Consensus 143 -----~~~l~ell~~aDvV~l~~P~t-~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~ 216 (333)
..+++++++++|+|+-++-.- .+.+..+.... .+.+.-+|..+-.+..-.-. ....+.. .--|.|.
T Consensus 408 ~~~I~~en~~~fl~~~DiVVDa~D~~~~~~rr~l~~~c---~~~~IP~I~ag~~G~~g~v~---v~~p~~~--~~~~~f~ 479 (989)
T PRK14852 408 PEGVAAETIDAFLKDVDLLVDGIDFFALDIRRRLFNRA---LELGIPVITAGPLGYSCALL---VFMPGGM--NFDSYFG 479 (989)
T ss_pred ecCCCHHHHHHHhhCCCEEEECCCCccHHHHHHHHHHH---HHcCCCEEEeeccccCeeEE---EEcCCCC--CHHHhCC
Confidence 124678889999999887531 23444444433 24455566654321100000 0000000 0011222
Q ss_pred CCCCCC---------------ccchhhcCCCcEEEccCCCCCcHHHHHHHHHHHHHHHHH-hHcCC
Q psy6348 217 EEPPKS---------------EQTFELIKHPKVIVTPHLGASTKEAQIRVAVEIAEQFIA-LANTN 266 (333)
Q Consensus 217 ~EP~~~---------------~~~~~L~~~pnvi~TPHi~~~t~ea~~~~~~~~~~~i~~-~~~~~ 266 (333)
-||..+ +.....++..+|-+.=+.+-++.-+..-++-.++.++.+ +++.+
T Consensus 480 ~~~~~p~~~~~~~~~l~~~p~~~~~~~~~~~~~~l~~~~~Ps~~~~~~l~a~~~~~~~~killg~~ 545 (989)
T PRK14852 480 IDDDTPPMEGYLRFGMGLAPRPAHLGYMDRRFVSLHDRRGPSLDIACHLCAGMAATEAVRILLHRR 545 (989)
T ss_pred CCCCCchHhhhhhhhccCCcchhhhcccCcccccccccCCCchHHHHHHhHHHHHHHHHHHHhCCC
Confidence 222100 111123455666666677778888888889999999999 45554
No 459
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=92.92 E-value=0.36 Score=42.20 Aligned_cols=63 Identities=25% Similarity=0.310 Sum_probs=42.8
Q ss_pred EEEEEecChHHHHHHHHHhhCCCEEEEE-cCCCCHHHHHhcCcccc-C---hhhhccCCCEEEEecCC
Q psy6348 100 TLAVLGLGRIGREVALRMQAFGMKVIGF-DPMVSVEDAAKLNIASL-G---LEDIWPLADYITVHTPL 162 (333)
Q Consensus 100 tvGIIGlG~IG~~vA~~l~~~G~~V~~~-d~~~~~~~a~~~gv~~~-~---l~ell~~aDvV~l~~P~ 162 (333)
++.|+|.|..|+.++..|+..|+++++| |.........-.|+... + +.++.++.+.++++++.
T Consensus 1 ~~~I~Gag~~g~~~~~~l~~~g~~vvgfid~~~~~~~~~i~g~pvlg~~~~l~~~~~~~~~~iiai~~ 68 (201)
T TIGR03570 1 KLVIIGAGGHGRVVADIAEDSGWEIVGFLDDNPALQGTSVDGLPVLGGDEDLLRYPPDEVDLVVAIGD 68 (201)
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCEEEEEEcCCccccCcccCCccEECCHHHHhhhcccccEEEEEcCC
Confidence 3689999999999999999999999987 54332211112344433 3 33444556888999873
No 460
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=92.90 E-value=0.63 Score=44.32 Aligned_cols=45 Identities=24% Similarity=0.297 Sum_probs=35.7
Q ss_pred CCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCc
Q psy6348 97 YGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNI 141 (333)
Q Consensus 97 ~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv 141 (333)
.|.++.|.|. |.+|+.+++.+++.|.+|++.+.....+.+++.|+
T Consensus 177 ~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~~~~~~~~~~g~ 222 (350)
T cd08274 177 AGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGAAKEEAVRALGA 222 (350)
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCchhhHHHHhcCC
Confidence 4789999999 99999999999999999988765433344455554
No 461
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=92.85 E-value=0.61 Score=44.08 Aligned_cols=88 Identities=23% Similarity=0.203 Sum_probs=59.0
Q ss_pred cCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHhcCcccc-Chhh-hccCCCEEEEecCCchhhHhhccH
Q psy6348 96 LYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV-SVEDAAKLNIASL-GLED-IWPLADYITVHTPLIPQTKNLINA 172 (333)
Q Consensus 96 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~gv~~~-~l~e-ll~~aDvV~l~~P~t~~t~~li~~ 172 (333)
..|.++.|.|.|.+|..+++.+++.|.+|++.++.. ..+.+++.|+... +.++ .-+..|+++.+.+.. . .-.
T Consensus 166 ~~~~~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~vD~vi~~~~~~---~--~~~ 240 (329)
T cd08298 166 KPGQRLGLYGFGASAHLALQIARYQGAEVFAFTRSGEHQELARELGADWAGDSDDLPPEPLDAAIIFAPVG---A--LVP 240 (329)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHHhCCcEEeccCccCCCcccEEEEcCCcH---H--HHH
Confidence 357899999999999999999999999999887765 3344555665322 2222 113467777664421 1 235
Q ss_pred HHHhccCCCcEEEEcc
Q psy6348 173 EVLKKCKKGVRVVNVA 188 (333)
Q Consensus 173 ~~~~~mk~gailIN~a 188 (333)
+.+..++++..++..+
T Consensus 241 ~~~~~l~~~G~~v~~g 256 (329)
T cd08298 241 AALRAVKKGGRVVLAG 256 (329)
T ss_pred HHHHHhhcCCEEEEEc
Confidence 5677788887777654
No 462
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=92.83 E-value=0.52 Score=45.23 Aligned_cols=45 Identities=29% Similarity=0.338 Sum_probs=35.1
Q ss_pred CCCEEEEEecChHHHHHHHHHhhCCCE-EEEEcCCC-CHHHHHhcCc
Q psy6348 97 YGKTLAVLGLGRIGREVALRMQAFGMK-VIGFDPMV-SVEDAAKLNI 141 (333)
Q Consensus 97 ~gktvGIIGlG~IG~~vA~~l~~~G~~-V~~~d~~~-~~~~a~~~gv 141 (333)
.|+++.|.|.|.+|...++.++.+|.+ |++.++.. ..+.++++|+
T Consensus 160 ~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~Ga 206 (347)
T PRK10309 160 EGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGA 206 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCC
Confidence 578999999999999999999999997 67787754 2233444443
No 463
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=92.82 E-value=0.58 Score=45.45 Aligned_cols=46 Identities=30% Similarity=0.476 Sum_probs=36.6
Q ss_pred cCCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC-CHHHHHhcCc
Q psy6348 96 LYGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV-SVEDAAKLNI 141 (333)
Q Consensus 96 l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~~gv 141 (333)
..|.++.|+|.|.+|...++.++.+|. +|++.++.. ..+.++++|+
T Consensus 183 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~ga 230 (365)
T cd08277 183 EPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEFGA 230 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCC
Confidence 358999999999999999999999999 799888854 2334445554
No 464
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=92.81 E-value=0.26 Score=48.07 Aligned_cols=86 Identities=15% Similarity=0.268 Sum_probs=53.0
Q ss_pred CCCEEEEEec-ChHHHHHHHHHhh--CC-CEEEEEcCCCCHHHHHhc---CccccChhhh-ccCCCEEEEecCCchhhHh
Q psy6348 97 YGKTLAVLGL-GRIGREVALRMQA--FG-MKVIGFDPMVSVEDAAKL---NIASLGLEDI-WPLADYITVHTPLIPQTKN 168 (333)
Q Consensus 97 ~gktvGIIGl-G~IG~~vA~~l~~--~G-~~V~~~d~~~~~~~a~~~---gv~~~~l~el-l~~aDvV~l~~P~t~~t~~ 168 (333)
.+.+|+|||. |.+|+.+.+.|.. +- .++..+....+....-.+ .....++++. +.++|++++++|..
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~~~~v~~~~~~~~~~~Dvvf~a~p~~----- 77 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGKSVTVQDAAEFDWSQAQLAFFVAGRE----- 77 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCcceEEEeCchhhccCCCEEEECCCHH-----
Confidence 4568999998 9999999999987 43 355555332211111001 1222245554 37899999999832
Q ss_pred hccHHHHhc-cCCCcEEEEcc
Q psy6348 169 LINAEVLKK-CKKGVRVVNVA 188 (333)
Q Consensus 169 li~~~~~~~-mk~gailIN~a 188 (333)
+..+.... .+.|+.+|+.|
T Consensus 78 -~s~~~~~~~~~~g~~VIDlS 97 (336)
T PRK08040 78 -ASAAYAEEATNAGCLVIDSS 97 (336)
T ss_pred -HHHHHHHHHHHCCCEEEECC
Confidence 22222222 25799999998
No 465
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=92.81 E-value=0.34 Score=45.45 Aligned_cols=124 Identities=15% Similarity=0.110 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCCCEEEEEecChHHHHHHHHHhhC----CC-------EEEEE
Q psy6348 59 ACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAF----GM-------KVIGF 127 (333)
Q Consensus 59 vAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~----G~-------~V~~~ 127 (333)
+|--+++-+++..|- .|..|...++.|+|.|..|-.+|+.+... |+ +++.+
T Consensus 4 TaaV~lAgll~Al~~------------------~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lv 65 (255)
T PF03949_consen 4 TAAVVLAGLLNALRV------------------TGKKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLV 65 (255)
T ss_dssp HHHHHHHHHHHHHHH------------------HTS-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEE
T ss_pred hHHHHHHHHHHHHHH------------------hCCCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEE
Confidence 455677778877662 35678899999999999999999998877 88 48888
Q ss_pred cCCC-------CHH----HHHhcCcc---ccChhhhccCC--CEEEEecCCchhhHhhccHHHHhccCC---CcEEEEcc
Q psy6348 128 DPMV-------SVE----DAAKLNIA---SLGLEDIWPLA--DYITVHTPLIPQTKNLINAEVLKKCKK---GVRVVNVA 188 (333)
Q Consensus 128 d~~~-------~~~----~a~~~gv~---~~~l~ell~~a--DvV~l~~P~t~~t~~li~~~~~~~mk~---gailIN~a 188 (333)
|+.- ... ...+..-. ..+|.|+++.+ |+++=+- ...+.|.++.++.|.+ ..++.=.|
T Consensus 66 D~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~~L~eav~~~kPtvLIG~S----~~~g~ft~evv~~Ma~~~erPIIF~LS 141 (255)
T PF03949_consen 66 DSKGLLTDDREDLNPHKKPFARKTNPEKDWGSLLEAVKGAKPTVLIGLS----GQGGAFTEEVVRAMAKHNERPIIFPLS 141 (255)
T ss_dssp ETTEEEBTTTSSHSHHHHHHHBSSSTTT--SSHHHHHHCH--SEEEECS----SSTTSS-HHHHHHCHHHSSSEEEEE-S
T ss_pred eccceEeccCccCChhhhhhhccCcccccccCHHHHHHhcCCCEEEEec----CCCCcCCHHHHHHHhccCCCCEEEECC
Confidence 8642 111 11111111 23899999999 9888653 2578899999999987 89999999
Q ss_pred CCcccchHhHHhhhhc
Q psy6348 189 RGGIVDENALLDSLKC 204 (333)
Q Consensus 189 Rg~~vd~~aL~~aL~~ 204 (333)
....-.|-.-.++.+-
T Consensus 142 NPt~~aE~~peda~~~ 157 (255)
T PF03949_consen 142 NPTPKAECTPEDAYEW 157 (255)
T ss_dssp SSCGGSSS-HHHHHHT
T ss_pred CCCCcccCCHHHHHhh
Confidence 8776334333333333
No 466
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=92.75 E-value=0.7 Score=44.35 Aligned_cols=45 Identities=38% Similarity=0.432 Sum_probs=35.7
Q ss_pred CCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCCC-HHHHHhcCc
Q psy6348 97 YGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMVS-VEDAAKLNI 141 (333)
Q Consensus 97 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~-~~~a~~~gv 141 (333)
.|+++.|.|.|.+|...++.+++.|+ +|++.++... .+.+.++|+
T Consensus 172 ~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~ga 218 (351)
T cd08233 172 PGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEELGA 218 (351)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCC
Confidence 58899999999999999999999999 8988887542 233344554
No 467
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=92.75 E-value=0.28 Score=54.28 Aligned_cols=67 Identities=25% Similarity=0.125 Sum_probs=52.0
Q ss_pred cCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC---------------CH-------HHHHhcCccc---------c
Q psy6348 96 LYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV---------------SV-------EDAAKLNIAS---------L 144 (333)
Q Consensus 96 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~---------------~~-------~~a~~~gv~~---------~ 144 (333)
-.||+|+|||.|.-|.+.|..|...|++|++|++.. .. +..++.|+++ +
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG~di 383 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVGKTA 383 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEeccEE
Confidence 469999999999999999999999999999997532 00 1234557642 3
Q ss_pred Chhhhcc-CCCEEEEecCC
Q psy6348 145 GLEDIWP-LADYITVHTPL 162 (333)
Q Consensus 145 ~l~ell~-~aDvV~l~~P~ 162 (333)
+++++.+ +.|.|++++-.
T Consensus 384 t~~~l~~~~yDAV~LAtGA 402 (944)
T PRK12779 384 TLEDLKAAGFWKIFVGTGA 402 (944)
T ss_pred eHHHhccccCCEEEEeCCC
Confidence 6788876 69999999764
No 468
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=92.71 E-value=0.61 Score=44.93 Aligned_cols=45 Identities=27% Similarity=0.314 Sum_probs=36.0
Q ss_pred CCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCCC-HHHHHhcCc
Q psy6348 97 YGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMVS-VEDAAKLNI 141 (333)
Q Consensus 97 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~-~~~a~~~gv 141 (333)
.|++|.|.|.|.+|..+++.++.+|. +|++.++... .+.++++|+
T Consensus 177 ~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~ 223 (361)
T cd08231 177 AGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAREFGA 223 (361)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCC
Confidence 68899999999999999999999999 9998887542 233344554
No 469
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=92.69 E-value=0.15 Score=49.46 Aligned_cols=96 Identities=19% Similarity=0.202 Sum_probs=57.8
Q ss_pred EEEEEec-ChHHHHHHHHHhhCCC-------EEEEEcCCCCH--HHHHhcC-----------cccc-ChhhhccCCCEEE
Q psy6348 100 TLAVLGL-GRIGREVALRMQAFGM-------KVIGFDPMVSV--EDAAKLN-----------IASL-GLEDIWPLADYIT 157 (333)
Q Consensus 100 tvGIIGl-G~IG~~vA~~l~~~G~-------~V~~~d~~~~~--~~a~~~g-----------v~~~-~l~ell~~aDvV~ 157 (333)
+|+|||. |.+|+.+|..|...|+ ++..+|..... ..+..+. +... +..+.+++||+|+
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiVV 80 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTDVDVAI 80 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCCCCEEE
Confidence 5899999 9999999998886444 58899975432 1111111 1111 3458899999999
Q ss_pred EecCCch---hhHh-hc--c----H---HHHhcc-CCCcEEEEccCCcccchHh
Q psy6348 158 VHTPLIP---QTKN-LI--N----A---EVLKKC-KKGVRVVNVARGGIVDENA 197 (333)
Q Consensus 158 l~~P~t~---~t~~-li--~----~---~~~~~m-k~gailIN~aRg~~vd~~a 197 (333)
+..-... +|+. ++ + + +.+... ++++++|.++ .++|.-.
T Consensus 81 itAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvs--NPvDv~t 132 (324)
T TIGR01758 81 LVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVG--NPANTNA 132 (324)
T ss_pred EcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC--CcHHHHH
Confidence 8754321 1111 11 1 1 123334 5788999887 5555444
No 470
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=92.66 E-value=0.22 Score=48.09 Aligned_cols=67 Identities=19% Similarity=0.319 Sum_probs=45.0
Q ss_pred CEEEEEecChHHHHHHHHHhh--CCCEEEEEcCCCCHHHHHhcCc---------c-ccCh---hhhccCCCEEEEec--C
Q psy6348 99 KTLAVLGLGRIGREVALRMQA--FGMKVIGFDPMVSVEDAAKLNI---------A-SLGL---EDIWPLADYITVHT--P 161 (333)
Q Consensus 99 ktvGIIGlG~IG~~vA~~l~~--~G~~V~~~d~~~~~~~a~~~gv---------~-~~~l---~ell~~aDvV~l~~--P 161 (333)
+||+|||.|.||+.+|-+|.. ++-++..||..........+.. . .+.- .+.++.||+|++.. |
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvitAG~p 80 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVITAGVP 80 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecCCChhhhcCCCEEEEeCCCC
Confidence 589999999999999988854 4458999998632211111111 0 1111 46789999999997 6
Q ss_pred Cchh
Q psy6348 162 LIPQ 165 (333)
Q Consensus 162 ~t~~ 165 (333)
..|.
T Consensus 81 rKpG 84 (313)
T COG0039 81 RKPG 84 (313)
T ss_pred CCCC
Confidence 5553
No 471
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=92.62 E-value=0.81 Score=42.71 Aligned_cols=97 Identities=20% Similarity=0.208 Sum_probs=64.4
Q ss_pred HHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccc-----------c----ChhhhccCCCEEEEecCCchhhHhhccHH
Q psy6348 109 IGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIAS-----------L----GLEDIWPLADYITVHTPLIPQTKNLINAE 173 (333)
Q Consensus 109 IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~-----------~----~l~ell~~aDvV~l~~P~t~~t~~li~~~ 173 (333)
||..+|.+|...|.+|..|++....+..++.|+.. . ++++ +..+|+|+++++.. ++...+ +.
T Consensus 2 iG~~~a~~L~~~G~~V~l~~r~~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~-~~~~D~iiv~vKs~-~~~~~l-~~ 78 (293)
T TIGR00745 2 VGSLYGAYLARAGHDVTLLARGEQLEALNQEGLRIVSLGGEFQFRPVSAATSPEE-LPPADLVIITVKAY-QTEEAA-AL 78 (293)
T ss_pred chHHHHHHHHhCCCcEEEEecHHHHHHHHHCCcEEEecCCcEEEcccccccChhh-cCCCCEEEEeccch-hHHHHH-HH
Confidence 78899999999999999999853233344444311 1 2333 56899999999854 455544 44
Q ss_pred HHhccCCCcEEEEccCCcccchHhHHhhhhcCCceE
Q psy6348 174 VLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGG 209 (333)
Q Consensus 174 ~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~g 209 (333)
....+.+++.+|.+.- ++-.++.+.+.+...++.+
T Consensus 79 l~~~l~~~~~iv~~qN-G~g~~~~l~~~~~~~~v~~ 113 (293)
T TIGR00745 79 LLPLIGKNTKVLFLQN-GLGHEERLRELLPARRILG 113 (293)
T ss_pred hHhhcCCCCEEEEccC-CCCCHHHHHHHhCccCEEE
Confidence 5566788888887644 4555667777776555543
No 472
>PRK08374 homoserine dehydrogenase; Provisional
Probab=92.56 E-value=0.66 Score=45.24 Aligned_cols=116 Identities=23% Similarity=0.295 Sum_probs=63.6
Q ss_pred CEEEEEecChHHHHHHHHHhh--------CC--CEEEEE-cCCC--------CHHHHH----hcC----c------cccC
Q psy6348 99 KTLAVLGLGRIGREVALRMQA--------FG--MKVIGF-DPMV--------SVEDAA----KLN----I------ASLG 145 (333)
Q Consensus 99 ktvGIIGlG~IG~~vA~~l~~--------~G--~~V~~~-d~~~--------~~~~a~----~~g----v------~~~~ 145 (333)
-+|+|+|+|.+|+.+++.+.. +| .+|.+. |+.. ...... +.+ + ...+
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~~ 82 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNFS 82 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCCC
Confidence 489999999999999988765 56 565543 4321 111111 111 1 1125
Q ss_pred hhhhc--cCCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCccc-chHhHHhhhhcCCce-EEEeccCCCCC
Q psy6348 146 LEDIW--PLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIV-DENALLDSLKCGHCG-GAALDVFCEEP 219 (333)
Q Consensus 146 l~ell--~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~v-d~~aL~~aL~~g~i~-gaalDV~~~EP 219 (333)
+++++ .++|+|+-+++. +... .-..+.++.|.-+|-...|.+- ..++|.+..++.... .+.-.|...-|
T Consensus 83 ~~ell~~~~~DVvVd~t~~-~~a~----~~~~~al~~G~~VVtanK~~la~~~~el~~la~~~~~~~~~ea~v~~GiP 155 (336)
T PRK08374 83 PEEIVEEIDADIVVDVTND-KNAH----EWHLEALKEGKSVVTSNKPPIAFHYDELLDLANERNLPYLFEATVMAGTP 155 (336)
T ss_pred HHHHHhcCCCCEEEECCCc-HHHH----HHHHHHHhhCCcEEECCHHHHHhCHHHHHHHHHHcCCeEEEeccccccCC
Confidence 67777 479999987752 2222 2233445677777766555332 344555554443322 23344444445
No 473
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=92.54 E-value=0.71 Score=41.69 Aligned_cols=37 Identities=24% Similarity=0.396 Sum_probs=33.4
Q ss_pred ccCCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348 95 ELYGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMV 131 (333)
Q Consensus 95 ~l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~ 131 (333)
.+.||++-|.|. |.||+.+|+.|...|++|++.++..
T Consensus 2 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~ 39 (248)
T TIGR01832 2 SLEGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSE 39 (248)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCch
Confidence 378999999998 8999999999999999999998754
No 474
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=92.50 E-value=0.72 Score=44.75 Aligned_cols=45 Identities=36% Similarity=0.560 Sum_probs=36.8
Q ss_pred CCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC-CHHHHHhcCc
Q psy6348 97 YGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV-SVEDAAKLNI 141 (333)
Q Consensus 97 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~~gv 141 (333)
.|.+|.|+|.|.+|...++.++.+|. +|++.++.. ..+.++++|+
T Consensus 187 ~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~Ga 233 (369)
T cd08301 187 KGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKFGV 233 (369)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCC
Confidence 58899999999999999999999999 799998765 3344455554
No 475
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=92.47 E-value=0.22 Score=46.88 Aligned_cols=63 Identities=16% Similarity=0.086 Sum_probs=45.2
Q ss_pred CEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCCCHH-HHHhcCccc--------cChhhhccCCCEEEEecC
Q psy6348 99 KTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMVSVE-DAAKLNIAS--------LGLEDIWPLADYITVHTP 161 (333)
Q Consensus 99 ktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~~~-~a~~~gv~~--------~~l~ell~~aDvV~l~~P 161 (333)
+++.|.|. |.||+.+++.|...|++|++.++..... .....+++. .++.++++.+|+|+.+..
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a~ 73 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKAVAGCRALFHVAA 73 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccccCCceEEEeeCCCHHHHHHHHhCCCEEEEece
Confidence 47889985 9999999999999999999999865321 111223322 135667888998887664
No 476
>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]
Probab=92.47 E-value=0.35 Score=46.49 Aligned_cols=64 Identities=20% Similarity=0.279 Sum_probs=49.2
Q ss_pred cCCCEEEEEe---cChHHHHHHHHHhhCCCEEEEEcCCC--CH----HHHHhcCc--cccCh-hhhccCCCEEEEe
Q psy6348 96 LYGKTLAVLG---LGRIGREVALRMQAFGMKVIGFDPMV--SV----EDAAKLNI--ASLGL-EDIWPLADYITVH 159 (333)
Q Consensus 96 l~gktvGIIG---lG~IG~~vA~~l~~~G~~V~~~d~~~--~~----~~a~~~gv--~~~~l-~ell~~aDvV~l~ 159 (333)
+.|++|+|+| +|++-++.+..|+.||.+|..+.|.. .+ +...+.|. ...+. +|.++++|++.+.
T Consensus 156 ~~gl~iaivGDlkhsRva~S~~~~L~~~ga~v~lvsP~~L~~p~~i~~~l~~~~~~~~~~~~~e~~i~~~DVl~~l 231 (316)
T COG0540 156 LDGLKIAIVGDLKHSRVAHSNIQALKRFGAEVYLVSPETLLPPEYILEELEEKGGVVVEHDSDEEVIEEADVLYML 231 (316)
T ss_pred cCCcEEEEEccccchHHHHHHHHHHHHcCCEEEEECchHhCCchhHHHHHhhcCceEEEecchhhhhccCCEEEee
Confidence 8899999999 79999999999999999999999864 21 22333332 23354 5599999999654
No 477
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=92.47 E-value=0.38 Score=45.41 Aligned_cols=65 Identities=14% Similarity=0.070 Sum_probs=45.3
Q ss_pred CCCEEEEEe-cChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHH---hc-----Cccc--------cChhhhccCCCEEEE
Q psy6348 97 YGKTLAVLG-LGRIGREVALRMQAFGMKVIGFDPMVSV-EDAA---KL-----NIAS--------LGLEDIWPLADYITV 158 (333)
Q Consensus 97 ~gktvGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~---~~-----gv~~--------~~l~ell~~aDvV~l 158 (333)
.||++.|.| .|-||+.+++.|.+.|++|++.++.... .... .. .+++ ..++++++++|+|+-
T Consensus 3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 82 (322)
T PLN02662 3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVFH 82 (322)
T ss_pred CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEEE
Confidence 368999999 5999999999999999999988765421 1111 00 1111 135677888998877
Q ss_pred ecC
Q psy6348 159 HTP 161 (333)
Q Consensus 159 ~~P 161 (333)
+..
T Consensus 83 ~A~ 85 (322)
T PLN02662 83 TAS 85 (322)
T ss_pred eCC
Confidence 653
No 478
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=92.46 E-value=0.49 Score=45.86 Aligned_cols=45 Identities=22% Similarity=0.256 Sum_probs=36.0
Q ss_pred CCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHH-hcCc
Q psy6348 97 YGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMVSV-EDAA-KLNI 141 (333)
Q Consensus 97 ~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~-~~gv 141 (333)
.|.++.|.|. |.+|...++.++.+|.+|++.++.... +.++ ++|+
T Consensus 158 ~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~lGa 205 (348)
T PLN03154 158 KGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLGF 205 (348)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhcCC
Confidence 5889999999 999999999999999999998775422 3333 4665
No 479
>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.45 E-value=0.27 Score=44.12 Aligned_cols=37 Identities=32% Similarity=0.366 Sum_probs=33.0
Q ss_pred ccCCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348 95 ELYGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMV 131 (333)
Q Consensus 95 ~l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~ 131 (333)
++.||++-|.|. |.||+.+++.|...|++|++.++..
T Consensus 2 ~l~~k~~lVtGas~~iG~~ia~~l~~~G~~v~~~~r~~ 39 (235)
T PRK06550 2 EFMTKTVLITGAASGIGLAQARAFLAQGAQVYGVDKQD 39 (235)
T ss_pred CCCCCEEEEcCCCchHHHHHHHHHHHCCCEEEEEeCCc
Confidence 478899999986 8899999999999999999998764
No 480
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=92.41 E-value=0.22 Score=50.62 Aligned_cols=70 Identities=23% Similarity=0.255 Sum_probs=54.0
Q ss_pred ccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH----------------------HHHHhcCcc--------
Q psy6348 93 GTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV----------------------EDAAKLNIA-------- 142 (333)
Q Consensus 93 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~----------------------~~a~~~gv~-------- 142 (333)
.....|++|+|||.|.-|...|..|...|+.|++|++.... +..++.|++
T Consensus 118 ~~~~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG 197 (457)
T COG0493 118 PGSRTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVG 197 (457)
T ss_pred CCCCCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceEC
Confidence 34567899999999999999999999999999998743210 122344543
Q ss_pred -ccChhhhccCCCEEEEecCC
Q psy6348 143 -SLGLEDIWPLADYITVHTPL 162 (333)
Q Consensus 143 -~~~l~ell~~aDvV~l~~P~ 162 (333)
..++++++++.|.|++++..
T Consensus 198 ~~it~~~L~~e~Dav~l~~G~ 218 (457)
T COG0493 198 RDITLEELLKEYDAVFLATGA 218 (457)
T ss_pred CcCCHHHHHHhhCEEEEeccc
Confidence 23789999999999999753
No 481
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=92.40 E-value=0.57 Score=44.76 Aligned_cols=45 Identities=24% Similarity=0.251 Sum_probs=36.0
Q ss_pred CCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHh-cCc
Q psy6348 97 YGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMV-SVEDAAK-LNI 141 (333)
Q Consensus 97 ~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~-~gv 141 (333)
.|.++.|.|. |.+|+.+++.++.+|.+|++.++.. ..+.+++ +|+
T Consensus 151 ~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~lGa 198 (338)
T cd08295 151 KGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKLGF 198 (338)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC
Confidence 5889999998 9999999999999999999887654 2233444 554
No 482
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=92.33 E-value=0.4 Score=43.98 Aligned_cols=38 Identities=29% Similarity=0.316 Sum_probs=33.3
Q ss_pred cccCCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348 94 TELYGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMV 131 (333)
Q Consensus 94 ~~l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~ 131 (333)
....++++.|+|. |.||+.+++.|...|++|++..+..
T Consensus 13 ~~~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~ 51 (251)
T PLN00141 13 ENVKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDV 51 (251)
T ss_pred ccccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCH
Confidence 4467899999995 9999999999999999999887754
No 483
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=92.31 E-value=0.59 Score=42.56 Aligned_cols=37 Identities=27% Similarity=0.243 Sum_probs=33.5
Q ss_pred ccCCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348 95 ELYGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMV 131 (333)
Q Consensus 95 ~l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~ 131 (333)
.+.||++.|.|. |.||+.+|+.|...|++|++.++..
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~ 44 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDP 44 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCH
Confidence 478999999996 9999999999999999999998864
No 484
>PLN02827 Alcohol dehydrogenase-like
Probab=92.30 E-value=0.64 Score=45.60 Aligned_cols=45 Identities=29% Similarity=0.509 Sum_probs=35.9
Q ss_pred CCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC-CHHHHHhcCc
Q psy6348 97 YGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV-SVEDAAKLNI 141 (333)
Q Consensus 97 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~~gv 141 (333)
.|.++.|.|.|.+|...++.++.+|. .|++.++.. ..+.++++|+
T Consensus 193 ~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~lGa 239 (378)
T PLN02827 193 KGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGV 239 (378)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCC
Confidence 58999999999999999999999998 488888654 3344555554
No 485
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=92.22 E-value=4.8 Score=41.87 Aligned_cols=191 Identities=14% Similarity=0.101 Sum_probs=117.9
Q ss_pred CCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCCCEEEEEecChHHHHHHHHHhh----
Q psy6348 44 KGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQA---- 119 (333)
Q Consensus 44 ~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~---- 119 (333)
..|+++|+.- ..+|-.+++-+++..|- .|..|...++.|.|.|..|..+|+.+..
T Consensus 264 ~~i~~FnDDi---QGTaaV~lAgll~Alr~------------------~g~~l~d~riv~~GAGsAgiGia~ll~~~m~~ 322 (559)
T PTZ00317 264 NKYRCFNDDI---QGTGAVIAAGFLNALKL------------------SGVPPEEQRIVFFGAGSAAIGVANNIADLAAE 322 (559)
T ss_pred cCCCEecccc---hhHHHHHHHHHHHHHHH------------------hCCChhhcEEEEECCCHHHHHHHHHHHHHHHH
Confidence 4599999853 45666788888888772 3567888999999999999999988873
Q ss_pred CCC-------EEEEEcCCC----------CH---HHHHhc-Ccc---ccChhhhccCC--CEEEEecCCchhhHhhccHH
Q psy6348 120 FGM-------KVIGFDPMV----------SV---EDAAKL-NIA---SLGLEDIWPLA--DYITVHTPLIPQTKNLINAE 173 (333)
Q Consensus 120 ~G~-------~V~~~d~~~----------~~---~~a~~~-gv~---~~~l~ell~~a--DvV~l~~P~t~~t~~li~~~ 173 (333)
.|. +++.+|+.- .. ..++.. ... ..+|.|+++.+ |+++=+- ...+.|.++
T Consensus 323 ~Gls~eeA~~~i~~vD~~GLl~~~r~~~l~~~k~~fa~~~~~~~~~~~~~L~e~v~~~KPtvLIG~S----~~~g~Ft~e 398 (559)
T PTZ00317 323 YGVTREEALKSFYLVDSKGLVTTTRGDKLAKHKVPFARTDISAEDSSLKTLEDVVRFVKPTALLGLS----GVGGVFTEE 398 (559)
T ss_pred cCCChhHhcCeEEEEcCCCeEeCCCCccccHHHHHHhccccccccccCCCHHHHHhccCCCEEEEec----CCCCCCCHH
Confidence 687 788888542 11 111111 011 34899999998 9888642 235789999
Q ss_pred HHhccCC---CcEEEEccCCcccchHhHHhhhh--cCC-ceEEEeccCCCCCCC-CccchhhcCCCcEEEccCCCCC---
Q psy6348 174 VLKKCKK---GVRVVNVARGGIVDENALLDSLK--CGH-CGGAALDVFCEEPPK-SEQTFELIKHPKVIVTPHLGAS--- 243 (333)
Q Consensus 174 ~~~~mk~---gailIN~aRg~~vd~~aL~~aL~--~g~-i~gaalDV~~~EP~~-~~~~~~L~~~pnvi~TPHi~~~--- 243 (333)
.++.|.+ ..+|.=.|....-.|-.-.+|.+ .|+ |.+.+.-. +|.. +.....-=+.-|+++-|=+|=-
T Consensus 399 vv~~Ma~~~~rPIIFaLSNPt~~aE~tpeda~~~T~Grai~AtGspf---~pv~~~G~~~~p~Q~NN~~iFPGiglG~l~ 475 (559)
T PTZ00317 399 VVKTMASNVERPIIFPLSNPTSKAECTAEDAYKWTNGRAIVASGSPF---PPVTLNGKTIQPSQGNNLYVFPGVGLGCAI 475 (559)
T ss_pred HHHHHHhcCCCCEEEECCCCCCCCCcCHHHHHhhccCCEEEEECCCC---CCcccCCeeeccCcCcceeeccchhhhhHh
Confidence 9999984 89999998876433333333333 354 43333321 1110 0000111256799999988621
Q ss_pred --cHHHHHHHHHHHHHHHHHh
Q psy6348 244 --TKEAQIRVAVEIAEQFIAL 262 (333)
Q Consensus 244 --t~ea~~~~~~~~~~~i~~~ 262 (333)
...--+.|...+++.+.++
T Consensus 476 ~~a~~Itd~m~~aAA~aLA~~ 496 (559)
T PTZ00317 476 AQPSYIPDEMLIAAAASLATL 496 (559)
T ss_pred hcccCCCHHHHHHHHHHHHhh
Confidence 1112234555555555554
No 486
>KOG4230|consensus
Probab=92.19 E-value=2.4 Score=44.15 Aligned_cols=178 Identities=21% Similarity=0.193 Sum_probs=109.8
Q ss_pred ccccCCCEEEEEecCh-HHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhcc
Q psy6348 93 GTELYGKTLAVLGLGR-IGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLIN 171 (333)
Q Consensus 93 g~~l~gktvGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~ 171 (333)
+..+.||+..|+|=-. +|..++..|+.....|..+...- .++.|.+.++|+|+.++-- .+++.
T Consensus 157 ~v~v~Gk~aVVlGRS~IVG~Pia~LL~~~NaTVTiCHSKT------------~~lae~v~~ADIvIvAiG~----PefVK 220 (935)
T KOG4230|consen 157 GVFVAGKNAVVLGRSKIVGSPIAALLLWANATVTICHSKT------------RNLAEKVSRADIVIVAIGQ----PEFVK 220 (935)
T ss_pred CCccccceeEEEecccccCChHHHHHHhcCceEEEecCCC------------ccHHHHhccCCEEEEEcCC----cceee
Confidence 4567899999999754 69999999998889998876521 2577888999999999752 33443
Q ss_pred HHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCccchhhcCCCcEEEccCCCCCcHHHHHHH
Q psy6348 172 AEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIRV 251 (333)
Q Consensus 172 ~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~L~~~pnvi~TPHi~~~t~ea~~~~ 251 (333)
.+ .+|||+++|+|+-..+-|... ++|.- ..=||..++-.. . -=.+||--||.-.=....+
T Consensus 221 gd---WiKpGavVIDvGINyvpD~~K-----ksg~k--lvGDVdfe~Ake------v----as~ITPVPGGVGPMTVAML 280 (935)
T KOG4230|consen 221 GD---WIKPGAVVIDVGINYVPDPSK-----KSGFK--LVGDVDFESAKE------V----ASFITPVPGGVGPMTVAML 280 (935)
T ss_pred cc---cccCCcEEEEccccccCCCCC-----cccce--EeeecchHhhhh------h----hhccccCCCCcchHHHHHH
Confidence 33 479999999998766555432 33432 355775444311 1 1268998888766555555
Q ss_pred HHHHHHHHHHhHcC-CCCCCCCCCcccc--c---ccCcccCCCCCchHHHHHHHhHHHHHH
Q psy6348 252 AVEIAEQFIALANT-NPQYTSIQGVLNA--P---ALAASRNPENTSWISLARSLGKISSQL 306 (333)
Q Consensus 252 ~~~~~~~i~~~~~~-~~~~~~~~~~vn~--~---~~~~~~~~~~~~~~~l~~~~g~~~~~~ 306 (333)
.+.+.+.-.++..+ ...+....+..+. | .++.+...+-++--.||+.||-....+
T Consensus 281 mqNtveaAKR~r~es~~~~~i~~~pl~l~tpvpsdidisrsq~pk~i~~la~e~gi~s~el 341 (935)
T KOG4230|consen 281 MQNTVEAAKRQREESKKKRKIDLLPLKLKTPVPSDIDISRSQEPKLIGQLAKELGIYSHEL 341 (935)
T ss_pred HHHHHHHHHHHHHhccccCcCCCCccccCCCCCcccchhhccCcchHHHHHHHhchhhHHH
Confidence 55555555553222 2121122233332 1 222333334455567898888655543
No 487
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=92.16 E-value=0.25 Score=48.19 Aligned_cols=84 Identities=13% Similarity=0.150 Sum_probs=49.6
Q ss_pred EEEEEe-cChHHHHHHHHHhhCCCEE---EEEcCCCCH-HHHHhcCcc--ccChh-hhccCCCEEEEecCCchhhHhhcc
Q psy6348 100 TLAVLG-LGRIGREVALRMQAFGMKV---IGFDPMVSV-EDAAKLNIA--SLGLE-DIWPLADYITVHTPLIPQTKNLIN 171 (333)
Q Consensus 100 tvGIIG-lG~IG~~vA~~l~~~G~~V---~~~d~~~~~-~~a~~~gv~--~~~l~-ell~~aDvV~l~~P~t~~t~~li~ 171 (333)
+|+||| -|.+|+.+.+.|...++.+ ..+.+..+. ......|.. ..+++ +.++++|++++|+|.. .++.+.
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~~~~~~~~~~~~~~~~~D~v~~a~g~~-~s~~~a- 78 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKGKELEVNEAKIESFEGIDIALFSAGGS-VSKEFA- 78 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCCeeEEEEeCChHHhcCCCEEEECCCHH-HHHHHH-
Confidence 589999 5999999999998866653 233232211 111111221 11222 3458899999999843 233221
Q ss_pred HHHHhccCCCcEEEEcc
Q psy6348 172 AEVLKKCKKGVRVVNVA 188 (333)
Q Consensus 172 ~~~~~~mk~gailIN~a 188 (333)
.. ..+.|+.+|+.+
T Consensus 79 ~~---~~~~G~~VID~s 92 (339)
T TIGR01296 79 PK---AAKCGAIVIDNT 92 (339)
T ss_pred HH---HHHCCCEEEECC
Confidence 22 235788999887
No 488
>PLN02686 cinnamoyl-CoA reductase
Probab=92.15 E-value=0.55 Score=45.97 Aligned_cols=36 Identities=17% Similarity=0.119 Sum_probs=31.6
Q ss_pred ccCCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCC
Q psy6348 95 ELYGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPM 130 (333)
Q Consensus 95 ~l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~ 130 (333)
.-.+|+|.|.|. |-||+.+++.|...|++|++..+.
T Consensus 50 ~~~~k~VLVTGatGfIG~~lv~~L~~~G~~V~~~~r~ 86 (367)
T PLN02686 50 DAEARLVCVTGGVSFLGLAIVDRLLRHGYSVRIAVDT 86 (367)
T ss_pred CCCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEeCC
Confidence 467899999997 999999999999999999886554
No 489
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=92.14 E-value=0.19 Score=40.98 Aligned_cols=77 Identities=22% Similarity=0.180 Sum_probs=55.4
Q ss_pred HHHHHHHHHhhCCCEEEEEcCCC-CHHHHHhcCcccc----------Chhhhcc--CCCEEEEecCCchhhHhhccHHHH
Q psy6348 109 IGREVALRMQAFGMKVIGFDPMV-SVEDAAKLNIASL----------GLEDIWP--LADYITVHTPLIPQTKNLINAEVL 175 (333)
Q Consensus 109 IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~gv~~~----------~l~ell~--~aDvV~l~~P~t~~t~~li~~~~~ 175 (333)
||...++.++.+|.+|++.++.. ..+.++++|...+ .+.++.. ..|+|+-|++. +. .-...+
T Consensus 2 vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~-~~----~~~~~~ 76 (130)
T PF00107_consen 2 VGLMAIQLAKAMGAKVIATDRSEEKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVGS-GD----TLQEAI 76 (130)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESSSS-HH----HHHHHH
T ss_pred hHHHHHHHHHHcCCEEEEEECCHHHHHHHHhhcccccccccccccccccccccccccceEEEEecCc-HH----HHHHHH
Confidence 78888999999999999999876 4566788886432 1223444 48999998872 22 225566
Q ss_pred hccCCCcEEEEccCC
Q psy6348 176 KKCKKGVRVVNVARG 190 (333)
Q Consensus 176 ~~mk~gailIN~aRg 190 (333)
..++++..++.++-.
T Consensus 77 ~~l~~~G~~v~vg~~ 91 (130)
T PF00107_consen 77 KLLRPGGRIVVVGVY 91 (130)
T ss_dssp HHEEEEEEEEEESST
T ss_pred HHhccCCEEEEEEcc
Confidence 778999898888554
No 490
>KOG2741|consensus
Probab=92.07 E-value=0.43 Score=46.47 Aligned_cols=69 Identities=22% Similarity=0.345 Sum_probs=50.6
Q ss_pred CEEEEEecChHHHHHHHHHhhC---CCEEEE-EcCCCC--HHHHHhcCc--cc--cChhhhccCC--CEEEEecCCchhh
Q psy6348 99 KTLAVLGLGRIGREVALRMQAF---GMKVIG-FDPMVS--VEDAAKLNI--AS--LGLEDIWPLA--DYITVHTPLIPQT 166 (333)
Q Consensus 99 ktvGIIGlG~IG~~vA~~l~~~---G~~V~~-~d~~~~--~~~a~~~gv--~~--~~l~ell~~a--DvV~l~~P~t~~t 166 (333)
-+.||+|+|+|++-.++.+... +++|++ +||+.. .+.+++.++ .. -+.|||++.. |+|.+..|...+.
T Consensus 7 ir~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~s~~~A~~fAq~~~~~~~k~y~syEeLakd~~vDvVyi~~~~~qH~ 86 (351)
T KOG2741|consen 7 IRWGIVGAGRIARDFVRALHTLPESNHQIVAVADPSLERAKEFAQRHNIPNPKAYGSYEELAKDPEVDVVYISTPNPQHY 86 (351)
T ss_pred eEEEEeehhHHHHHHHHHhccCcccCcEEEEEecccHHHHHHHHHhcCCCCCccccCHHHHhcCCCcCEEEeCCCCccHH
Confidence 3789999999999999988753 567665 577553 345566676 22 3899999875 9999999865543
Q ss_pred H
Q psy6348 167 K 167 (333)
Q Consensus 167 ~ 167 (333)
+
T Consensus 87 e 87 (351)
T KOG2741|consen 87 E 87 (351)
T ss_pred H
Confidence 3
No 491
>PRK08328 hypothetical protein; Provisional
Probab=92.04 E-value=0.23 Score=45.81 Aligned_cols=37 Identities=30% Similarity=0.514 Sum_probs=32.6
Q ss_pred cccCCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCC
Q psy6348 94 TELYGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPM 130 (333)
Q Consensus 94 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~ 130 (333)
..|.+++|.|+|+|.+|..+|+.|...|. ++..+|+.
T Consensus 23 ~~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D 60 (231)
T PRK08328 23 EKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQ 60 (231)
T ss_pred HHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 45889999999999999999999999997 67778754
No 492
>PRK10083 putative oxidoreductase; Provisional
Probab=92.01 E-value=0.81 Score=43.49 Aligned_cols=45 Identities=18% Similarity=0.255 Sum_probs=34.7
Q ss_pred CCCEEEEEecChHHHHHHHHHhh-CCCE-EEEEcCCC-CHHHHHhcCc
Q psy6348 97 YGKTLAVLGLGRIGREVALRMQA-FGMK-VIGFDPMV-SVEDAAKLNI 141 (333)
Q Consensus 97 ~gktvGIIGlG~IG~~vA~~l~~-~G~~-V~~~d~~~-~~~~a~~~gv 141 (333)
.|.++.|.|.|.+|..+++.+++ +|.+ |++.++.. ..+.++++|+
T Consensus 160 ~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~Ga 207 (339)
T PRK10083 160 EQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGA 207 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhCC
Confidence 57899999999999999999986 6986 77777754 3344455665
No 493
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=91.97 E-value=0.74 Score=41.43 Aligned_cols=37 Identities=24% Similarity=0.279 Sum_probs=33.7
Q ss_pred ccCCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348 95 ELYGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMV 131 (333)
Q Consensus 95 ~l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~ 131 (333)
++.|+++.|+|. |.||+.+++.+.+.|++|+..++..
T Consensus 2 ~~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~ 39 (253)
T PRK08217 2 DLKDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQ 39 (253)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 367999999998 9999999999999999999998864
No 494
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=91.97 E-value=0.86 Score=42.84 Aligned_cols=45 Identities=18% Similarity=0.230 Sum_probs=35.8
Q ss_pred CCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHhcCc
Q psy6348 97 YGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMV-SVEDAAKLNI 141 (333)
Q Consensus 97 ~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~gv 141 (333)
.|.++.|+|. |.+|..+++.+++.|++|++.++.. ..+.++++|+
T Consensus 146 ~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~ 192 (326)
T cd08289 146 EQGPVLVTGATGGVGSLAVSILAKLGYEVVASTGKADAADYLKKLGA 192 (326)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCC
Confidence 3679999999 9999999999999999999887755 2334444554
No 495
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=91.96 E-value=0.85 Score=43.52 Aligned_cols=88 Identities=24% Similarity=0.242 Sum_probs=56.4
Q ss_pred CCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHhcCccc-cChh----------hhcc-CCCEEEEecCCc
Q psy6348 97 YGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV-SVEDAAKLNIAS-LGLE----------DIWP-LADYITVHTPLI 163 (333)
Q Consensus 97 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~gv~~-~~l~----------ell~-~aDvV~l~~P~t 163 (333)
.|+++.|.|.|.+|+.+++.++++|.+|++.++.. ..+.++++|+.. .+.. .+.. ..|+++-++..
T Consensus 165 ~~~~vlV~g~g~vg~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~d~vi~~~g~- 243 (345)
T cd08260 165 PGEWVAVHGCGGVGLSAVMIASALGARVIAVDIDDDKLELARELGAVATVNASEVEDVAAAVRDLTGGGAHVSVDALGI- 243 (345)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHhCCCEEEccccchhHHHHHHHHhCCCCCEEEEcCCC-
Confidence 57899999999999999999999999999887654 234445556521 1111 1111 46777665541
Q ss_pred hhhHhhccHHHHhccCCCcEEEEccC
Q psy6348 164 PQTKNLINAEVLKKCKKGVRVVNVAR 189 (333)
Q Consensus 164 ~~t~~li~~~~~~~mk~gailIN~aR 189 (333)
.. .-...+..|+++..+++++.
T Consensus 244 ~~----~~~~~~~~l~~~g~~i~~g~ 265 (345)
T cd08260 244 PE----TCRNSVASLRKRGRHVQVGL 265 (345)
T ss_pred HH----HHHHHHHHhhcCCEEEEeCC
Confidence 11 11344566777777777654
No 496
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=91.94 E-value=0.38 Score=47.66 Aligned_cols=41 Identities=24% Similarity=0.323 Sum_probs=35.7
Q ss_pred CCccccCCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348 91 YTGTELYGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMV 131 (333)
Q Consensus 91 ~~g~~l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~ 131 (333)
+.+....++++.|+|. |.||+.+++.|...|++|+++++..
T Consensus 53 ~~~~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~ 94 (390)
T PLN02657 53 FRSKEPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREK 94 (390)
T ss_pred ccccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEech
Confidence 3456678899999997 9999999999999999999998765
No 497
>PLN02427 UDP-apiose/xylose synthase
Probab=91.90 E-value=0.41 Score=46.91 Aligned_cols=69 Identities=20% Similarity=0.252 Sum_probs=48.3
Q ss_pred CccccCCCEEEEEec-ChHHHHHHHHHhhC-CCEEEEEcCCCCH-HHHHhc-------Ccccc--------ChhhhccCC
Q psy6348 92 TGTELYGKTLAVLGL-GRIGREVALRMQAF-GMKVIGFDPMVSV-EDAAKL-------NIASL--------GLEDIWPLA 153 (333)
Q Consensus 92 ~g~~l~gktvGIIGl-G~IG~~vA~~l~~~-G~~V~~~d~~~~~-~~a~~~-------gv~~~--------~l~ell~~a 153 (333)
.|..++.++|.|.|. |-||+.+++.|... |++|+++|+.... ...... +++++ .++++++++
T Consensus 8 ~~~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~ 87 (386)
T PLN02427 8 DGKPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMA 87 (386)
T ss_pred CCCcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcC
Confidence 466788889999995 99999999999987 5999999975422 111111 22221 355678889
Q ss_pred CEEEEec
Q psy6348 154 DYITVHT 160 (333)
Q Consensus 154 DvV~l~~ 160 (333)
|+|+-+.
T Consensus 88 d~ViHlA 94 (386)
T PLN02427 88 DLTINLA 94 (386)
T ss_pred CEEEEcc
Confidence 9877554
No 498
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=91.90 E-value=0.57 Score=42.23 Aligned_cols=37 Identities=35% Similarity=0.396 Sum_probs=33.6
Q ss_pred ccCCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348 95 ELYGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMV 131 (333)
Q Consensus 95 ~l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~ 131 (333)
++.++++.|+|. |.||+.+++.|...|++|++.++..
T Consensus 2 ~~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~ 39 (251)
T PRK07231 2 RLEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNE 39 (251)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 467899999997 8999999999999999999999865
No 499
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=91.89 E-value=0.49 Score=47.98 Aligned_cols=67 Identities=25% Similarity=0.225 Sum_probs=49.3
Q ss_pred cCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCC----------------------HHHHHhcCcccc---------
Q psy6348 96 LYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVS----------------------VEDAAKLNIASL--------- 144 (333)
Q Consensus 96 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~----------------------~~~a~~~gv~~~--------- 144 (333)
-.+++|.|||.|..|...|..|+..|++|+.|++... .+...+.|++..
T Consensus 141 ~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~~~ 220 (471)
T PRK12810 141 RTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFRTNVEVGKDI 220 (471)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEEeCCEECCcC
Confidence 4688999999999999999999999999999986421 122344565421
Q ss_pred ChhhhccCCCEEEEecCC
Q psy6348 145 GLEDIWPLADYITVHTPL 162 (333)
Q Consensus 145 ~l~ell~~aDvV~l~~P~ 162 (333)
+.+++....|.|++++-.
T Consensus 221 ~~~~~~~~~d~vvlAtGa 238 (471)
T PRK12810 221 TAEELLAEYDAVFLGTGA 238 (471)
T ss_pred CHHHHHhhCCEEEEecCC
Confidence 234555678999998754
No 500
>PLN02214 cinnamoyl-CoA reductase
Probab=91.88 E-value=0.53 Score=45.49 Aligned_cols=67 Identities=19% Similarity=0.111 Sum_probs=48.0
Q ss_pred ccCCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCCCH-H-H-HHhc-----Cccc--------cChhhhccCCCEEE
Q psy6348 95 ELYGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMVSV-E-D-AAKL-----NIAS--------LGLEDIWPLADYIT 157 (333)
Q Consensus 95 ~l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~~-~-~-a~~~-----gv~~--------~~l~ell~~aDvV~ 157 (333)
.+.++++.|.|. |.||+.+++.|...|++|.+.++..+. . . .... .++. .+++++++.+|+|+
T Consensus 7 ~~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vi 86 (342)
T PLN02214 7 SPAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGVF 86 (342)
T ss_pred cCCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEEE
Confidence 367899999998 999999999999999999998875432 1 0 1111 1221 13567788899887
Q ss_pred EecC
Q psy6348 158 VHTP 161 (333)
Q Consensus 158 l~~P 161 (333)
-+..
T Consensus 87 h~A~ 90 (342)
T PLN02214 87 HTAS 90 (342)
T ss_pred EecC
Confidence 7764
Done!