RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6348
(333 letters)
>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase,
phosphoglycerate dehydrogenase deficiency, S metabolism,
2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo
sapiens}
Length = 335
Score = 446 bits (1149), Expect = e-158
Identities = 164/268 (61%), Positives = 197/268 (73%), Gaps = 4/268 (1%)
Query: 1 KYDGLVVRSDTKVTAEVLQ-ASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISA 59
+GL+VRS TKVTA+V+ A LQVVGRAGTGVDN+DL AATRKG+LV+N P GN +SA
Sbjct: 67 DCEGLIVRSATKVTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSA 126
Query: 60 CELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQA 119
ELTC +I L+R +PQ S+K+GKW+RK + GTEL GKTL +LGLGRIGREVA RMQ+
Sbjct: 127 AELTCGMIMCLARQIPQATASMKDGKWERKKFMGTELNGKTLGILGLGRIGREVATRMQS 186
Query: 120 FGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCK 179
FGMK IG+DP++S E +A + L LE+IWPL D+ITVHTPL+P T L+N +CK
Sbjct: 187 FGMKTIGYDPIISPEVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCK 246
Query: 180 KGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPH 239
KGVRVVN ARGGIVDE ALL +L+ G C GAALDVF EEPP+ L+ H VI PH
Sbjct: 247 KGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEPPRDR---ALVDHENVISCPH 303
Query: 240 LGASTKEAQIRVAVEIAEQFIALANTNP 267
LGASTKEAQ R EIA QF+ +
Sbjct: 304 LGASTKEAQSRCGEEIAVQFVDMVKGKS 331
>1wwk_A Phosphoglycerate dehydrogenase; riken structural
genomics/proteomics initiative, RSGI, structural
genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus
horikoshii}
Length = 307
Score = 436 bits (1124), Expect = e-155
Identities = 110/261 (42%), Positives = 161/261 (61%), Gaps = 3/261 (1%)
Query: 2 YDGLVVRSDTKVTAEVLQ-ASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISAC 60
+ ++VRS KVT V++ A L+V+ RAG G+DNID+ AA KG+ V+NAP + S
Sbjct: 45 VEAIIVRSKPKVTRRVIESAPKLKVIARAGVGLDNIDVEAAKEKGIEVVNAPAASSRSVA 104
Query: 61 ELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAF 120
EL L+ +++R + + ++EG W +K G EL GKT+ ++G GRIG +VA A
Sbjct: 105 ELAVGLMFSVARKIAFADRKMREGVWAKKEAMGIELEGKTIGIIGFGRIGYQVAKIANAL 164
Query: 121 GMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKK 180
GM ++ +DP + E A ++N + LE + +D +T+H PL+ T +LIN E LK KK
Sbjct: 165 GMNILLYDPYPNEERAKEVNGKFVDLETLLKESDVVTIHVPLVESTYHLINEERLKLMKK 224
Query: 181 GVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHL 240
++N +RG +VD NAL+ +LK G GA LDVF EEP + L K V++TPH+
Sbjct: 225 TAILINTSRGPVVDTNALVKALKEGWIAGAGLDVFEEEPLPKDH--PLTKFDNVVLTPHI 282
Query: 241 GASTKEAQIRVAVEIAEQFIA 261
GAST EAQ R VE+AE+ +
Sbjct: 283 GASTVEAQERAGVEVAEKVVK 303
>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}
Length = 313
Score = 434 bits (1119), Expect = e-154
Identities = 104/267 (38%), Positives = 151/267 (56%), Gaps = 3/267 (1%)
Query: 2 YDGLVVRSDTKVTAEVLQ-ASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISAC 60
YD +VVRS TKVT +V++ L+++ RAG G+DNID A ++ + V+ APG + SA
Sbjct: 47 YDIIVVRSRTKVTKDVIEKGKKLKIIARAGIGLDNIDTEEAEKRNIKVVYAPGASTDSAV 106
Query: 61 ELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAF 120
ELT L+ A +R + K G + + G EL GKT+ ++G GRIG +V + A
Sbjct: 107 ELTIGLMIAAARKMYTSMALAKSGIFKK--IEGLELAGKTIGIVGFGRIGTKVGIIANAM 164
Query: 121 GMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKK 180
GMKV+ +D + E A K+N ++ LE++ +D I++H + K +I+ + K
Sbjct: 165 GMKVLAYDILDIREKAEKINAKAVSLEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKD 224
Query: 181 GVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHL 240
V +VN +R V+ ALLD +K G A DVF EPPK E EL+KH +VIVT H+
Sbjct: 225 NVIIVNTSRAVAVNGKALLDYIKKGKVYAYATDVFWNEPPKEEWELELLKHERVIVTTHI 284
Query: 241 GASTKEAQIRVAVEIAEQFIALANTNP 267
GA TKEAQ RVA + +
Sbjct: 285 GAQTKEAQKRVAEMTTQNLLNAMKELG 311
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine
biosy structural genomics, PSI, protein structure
initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis}
SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A*
3ddn_A*
Length = 529
Score = 439 bits (1132), Expect = e-153
Identities = 139/307 (45%), Positives = 183/307 (59%), Gaps = 10/307 (3%)
Query: 2 YDGLVVRSDTKVTAEVLQAS-NLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISAC 60
D L+VRS T V AEVL A+ L++V RAG G+DN+D+ AAT +GVLV+NAP N SA
Sbjct: 45 ADALLVRSATTVDAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAA 104
Query: 61 ELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAF 120
E +L+ A SR +P SL+E W R ++GTE++GKT+ V+GLGRIG+ VA R+ AF
Sbjct: 105 EHALALLLAASRQIPAADASLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQRIAAF 164
Query: 121 GMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKK 180
G V+ +DP VS AA+L I L L+D+ AD+I+VH P P+T LI+ E L K K
Sbjct: 165 GAYVVAYDPYVSPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKP 224
Query: 181 GVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHL 240
GV +VN ARGG+VDE AL D++ GH A LDVF EP L + +V+VTPHL
Sbjct: 225 GVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCTDS---PLFELAQVVVTPHL 281
Query: 241 GASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNAPALAASRNPENTSWISLARSLG 300
GAST EAQ R ++AE + +N N E W+ L R LG
Sbjct: 282 GASTAEAQDRAGTDVAESVRLALAGEF----VPDAVNVGGGVV--NEEVAPWLDLVRKLG 335
Query: 301 KISSQLL 307
++ L
Sbjct: 336 VLAGVLS 342
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle
structural genomics center for infect disease,
brucellosis; 2.15A {Brucella melitensis biovar abortus}
Length = 416
Score = 425 bits (1095), Expect = e-149
Identities = 96/312 (30%), Positives = 151/312 (48%), Gaps = 11/312 (3%)
Query: 2 YDGLVVRSDTKVTAEVLQ-ASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISAC 60
+ +RS T++T E+ A+ L VG G + ++L AA ++G+ V NAP N S
Sbjct: 59 AHIIGIRSRTQLTEEIFAAANRLIAVGCFSVGTNQVELKAARKRGIPVFNAPFSNTRSVA 118
Query: 61 ELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAF 120
EL I L R + S G W++ E+ GKTL ++G G IG +V ++
Sbjct: 119 ELVIGEIIMLMRRIFPRSVSAHAGGWEKTAIGSREVRGKTLGIVGYGNIGSQVGNLAESL 178
Query: 121 GMKVIGFDPMVSVEDAAKLNIASLG-LEDIWPLADYITVHTPLIPQTKNLINAEVLKKCK 179
GM V +D + N+ L+++ +D +++H P T LI L+K K
Sbjct: 179 GMTVRYYDT---SDKLQYGNVKPAASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMK 235
Query: 180 KGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFE--LIKHPKVIVT 237
KG ++N ARG VD AL L+ GH GAA+DVF EP + + F L VI+T
Sbjct: 236 KGAFLINNARGSDVDLEALAKVLQEGHLAGAAIDVFPVEPASNGERFSTPLQGLENVILT 295
Query: 238 PHLGASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNAPALAASRNPENTSWISLAR 297
PH+G ST+EAQ R+ E+ + + ++ G +N P + P T ++ +
Sbjct: 296 PHIGGSTEEAQERIGTEVTRKLVEYSDVGS----TVGAVNFPQVQLPPRPTGTRFMHVHE 351
Query: 298 SLGKISSQLLQT 309
+ I + L+
Sbjct: 352 NRPGILNSLMNV 363
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation
phosphoglycerate dehydrogenase PGDH, oxidoreductase;
HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4
c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A*
2pa3_A* 2p9g_A*
Length = 404
Score = 410 bits (1057), Expect = e-144
Identities = 94/326 (28%), Positives = 155/326 (47%), Gaps = 23/326 (7%)
Query: 2 YDGLVVRSDTKVTAEVLQ-ASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISAC 60
+ +RS T +T +V+ A L +G G + +DL AA ++G+ V NAP N S
Sbjct: 48 AHFIGLRSRTHLTEDVINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVA 107
Query: 61 ELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAF 120
EL + L R VP+ G ++ E GK L ++G G IG ++ + ++
Sbjct: 108 ELVIGELLLLLRGVPEANAKAHRGVGNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESL 167
Query: 121 GMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKK 180
GM V +D + L D+ ++D +++H P P TKN++ A+ + K
Sbjct: 168 GMYVYFYDI--ENKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKP 225
Query: 181 GVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFE--LIKHPKVIVTP 238
G ++N +RG +VD AL D+L H GAA+DVF EP + F L + V++TP
Sbjct: 226 GSLLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTP 285
Query: 239 HLGASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNAPALAASRN------------ 286
H+G ST+EAQ + +E+A + I ++ +N P ++ +
Sbjct: 286 HIGGSTQEAQENIGLEVAGKLIKYSDNGS----TLSAVNFPEVSLPLHGGRRLMHIHENR 341
Query: 287 PENTSWIS--LARSLGKISSQLLQTS 310
P + ++ A I++Q LQTS
Sbjct: 342 PGVLTALNKIFAEQGVNIAAQYLQTS 367
>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein,
phosphorylation, transcriptional corepresso
transcription repressor; HET: NAD; 1.95A {Homo sapiens}
SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A*
3ga0_A 2ome_A*
Length = 347
Score = 398 bits (1025), Expect = e-139
Identities = 91/279 (32%), Positives = 140/279 (50%), Gaps = 11/279 (3%)
Query: 1 KYDGLVVRSDTKVTAEVLQ-ASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISA 59
+ G ++ +T E L+ L+++ R G+G DNID+ +A G+ V N P +
Sbjct: 63 EAVGALMYHTITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEET 122
Query: 60 CELTCSLISALSRNVPQGCQSLKEGKWDRK-------LYTGTELYGKTLAVLGLGRIGRE 112
+ T I L R Q+L+EG + + G+TL ++GLGR+G+
Sbjct: 123 ADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQA 182
Query: 113 VALRMQAFGMKVIGFDPMVSVEDAAKLNIASLG-LEDIWPLADYITVHTPLIPQTKNLIN 171
VALR +AFG V+ +DP +S L + + L+D+ +D +T+H L +LIN
Sbjct: 183 VALRAKAFGFNVLFYDPYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLIN 242
Query: 172 AEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKH 231
+K+ ++G +VN ARGG+VDE AL +LK G GAALDV EP Q L
Sbjct: 243 DFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQG-PLKDA 301
Query: 232 PKVIVTPHLGASTKEAQIRVAVEIAEQFI-ALANTNPQY 269
P +I TPH +++A I + E A + A+ P
Sbjct: 302 PNLICTPHAAWYSEQASIEMREEAAREIRRAITGRIPDS 340
>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD,
oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana}
PDB: 3n7u_A* 3naq_A
Length = 351
Score = 392 bits (1008), Expect = e-137
Identities = 83/273 (30%), Positives = 135/273 (49%), Gaps = 9/273 (3%)
Query: 2 YDGLVVRS--DTKVTAEVLQ-ASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFIS 58
L+ VTAE ++ A NL+++ AG G D+IDL AA G+ V G N +S
Sbjct: 63 LHVLISTPFHPAYVTAERIKKAKNLKLLLTAGIGSDHIDLQAAAAAGLTVAEVTGSNVVS 122
Query: 59 ACELTCSLISALSRNVPQGCQSLKEGKWDRK--LYTGTELYGKTLAVLGLGRIGREVALR 116
E I L RN G + +G+W+ Y +L GKT+ +G GRIG+ + R
Sbjct: 123 VAEDELMRILILMRNFVPGYNQVVKGEWNVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQR 182
Query: 117 MQAFGMKVIGFDP-MVSVEDAAKLNIASLG-LEDIWPLADYITVHTPLIPQTKNLINAEV 174
++ FG ++ D ++ E + + L ++ P D I ++ PL +T+ + N E+
Sbjct: 183 LKPFGCNLLYHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKEL 242
Query: 175 LKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKV 234
+ K KKGV +VN ARG I++ A++D+++ GH GG + DV+ +P + P
Sbjct: 243 IGKLKKGVLIVNNARGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDH--PWRYMPNQ 300
Query: 235 IVTPHLGASTKEAQIRVAVEIAEQFIALANTNP 267
+TPH +T +AQ+R A +
Sbjct: 301 AMTPHTSGTTIDAQLRYAAGTKDMLERYFKGED 333
>2nac_A NAD-dependent formate dehydrogenase;
oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas
SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A*
2gsd_A* 3fn4_A
Length = 393
Score = 378 bits (972), Expect = e-131
Identities = 86/300 (28%), Positives = 138/300 (46%), Gaps = 12/300 (4%)
Query: 2 YDGLVVRS--DTKVTAEVLQ-ASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFIS 58
D ++ + +T E + A NL++ AG G D++DL +A + V V N IS
Sbjct: 90 ADVVISQPFWPAYLTPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSIS 149
Query: 59 ACELTCSLISALSRNVPQGCQSLKEGKWDRK--LYTGTELYGKTLAVLGLGRIGREVALR 116
E +I +L RN + ++G W+ + +L + + GRIG V R
Sbjct: 150 VAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRR 209
Query: 117 MQAFGMKVIGFDPMVSVEDAAK-LNIASLG-LEDIWPLADYITVHTPLIPQTKNLINAEV 174
+ F + + D E K LN+ ED++P+ D +T++ PL P+T+++IN E
Sbjct: 210 LAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDET 269
Query: 175 LKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKV 234
LK K+G +VN ARG + D +A+ +L+ G G A DV+ +P + P
Sbjct: 270 LKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDH--PWRTMPYN 327
Query: 235 IVTPHLGASTKEAQIRVAVEIAEQFIALANTNP---QYTSIQGVLNAPALAASRNPENTS 291
+TPH+ +T AQ R A E P +Y +QG A A S + N +
Sbjct: 328 GMTPHISGTTLTAQARYAAGTREILECFFEGRPIRDEYLIVQGGALAGTGAHSYSKGNAT 387
>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid
dehydrogenase, cofactor regenerator, yeast, CBFDH; HET:
PG4; 1.55A {Candida boidinii} PDB: 2fss_A
Length = 364
Score = 376 bits (968), Expect = e-131
Identities = 76/282 (26%), Positives = 117/282 (41%), Gaps = 14/282 (4%)
Query: 2 YDGLVVRSD--TKVTAEVLQ-ASNLQVVGRAGTGVDNIDLTAATRKG--VLVLNAPGGNF 56
D ++ +T E + A L++V AG G D+IDL + G + VL G N
Sbjct: 61 ADIIITTPFHPAYITKERIDKAKKLKLVVVAGVGSDHIDLDYINQTGKKISVLEVTGSNV 120
Query: 57 ISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYT--GTELYGKTLAVLGLGRIGREVA 114
+S E + L RN + + W+ ++ GKT+A +G GRIG V
Sbjct: 121 VSVAEHVVMTMLVLVRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVL 180
Query: 115 LRMQAFGMKVIGFDP--MVSVEDAAKLNIASLG-LEDIWPLADYITVHTPLIPQTKNLIN 171
R+ F K + + + + K+ + +E++ AD +TV+ PL TK LIN
Sbjct: 181 ERLVPFNPKELLYYDYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLIN 240
Query: 172 AEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQ---TFEL 228
E+L K KKG +VN ARG I + +L+ G G DV+ +P +
Sbjct: 241 KELLSKFKKGAWLVNTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRN 300
Query: 229 IKHPKVIVTPHLGASTKEAQIRVAVEIAEQFI-ALANTNPQY 269
+TPH +T +AQ R A
Sbjct: 301 KYGAGNAMTPHYSGTTLDAQTRYAQGTVNILESFFTGKFDYR 342
>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project
protein structural and functional analyses; 1.95A
{Pyrococcus horikoshii}
Length = 333
Score = 374 bits (962), Expect = e-130
Identities = 85/289 (29%), Positives = 143/289 (49%), Gaps = 14/289 (4%)
Query: 2 YDGLVVRSDTKVTAEVLQ-ASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISAC 60
+DG++V TK+T EVL+ A L+V+ G DNIDL AT++G+ V G +
Sbjct: 43 FDGIIVSPTTKITREVLENAERLKVISCHSAGYDNIDLEEATKRGIYVTKVSGLLSEAVA 102
Query: 61 ELTCSLISALSRNVPQGCQSLKEGKWDRKLYT------GTELYGKTLAVLGLGRIGREVA 114
E T LI L R + + ++ G+W+ LYGK + +LG+G IG+ +A
Sbjct: 103 EFTVGLIINLMRKIHYADKFIRRGEWESHAKIWTGFKRIESLYGKKVGILGMGAIGKAIA 162
Query: 115 LRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEV 174
R+ FG+K+ + V +L + ++++ +D + + PL T ++IN E
Sbjct: 163 RRLIPFGVKLYYWSRHRKVNVEKELKARYMDIDELLEKSDIVILALPLTRDTYHIINEER 222
Query: 175 LKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKV 234
+KK +G +VN+ RG +VDE A+ +++K G G A DVF +EP + + F+ +
Sbjct: 223 VKKL-EGKYLVNIGRGALVDEKAVTEAIKQGKLKGYATDVFEKEPVREHELFKY--EWET 279
Query: 235 IVTPHLGASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNAPALAA 283
++TPH EAQ V E + + + ++N L
Sbjct: 280 VLTPHYAGLALEAQEDVGFRAVENLLKVLRGEV----PEDLVNKEVLEV 324
>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J,
structural genomics, protein structure initiative; 2.20A
{Thermoplasma acidophilum}
Length = 290
Score = 369 bits (950), Expect = e-129
Identities = 66/268 (24%), Positives = 124/268 (46%), Gaps = 16/268 (5%)
Query: 1 KYDGLVVR----SDTKVTAEVLQAS-NLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGN 55
+D ++ +V + +++ GVD+ID+ VL NA
Sbjct: 23 GFDLHWYPDYYDAEAQVIKDRYVLGKRTKMIQAISAGVDHIDVNGIPENVVLCSNAGA-Y 81
Query: 56 FISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVAL 115
IS E +L+ A ++N+ + + +K G + + T LYGK L +LG G IGR VA
Sbjct: 82 SISVAEHAFALLLAHAKNILENNELMKAGIFRQSP--TTLLYGKALGILGYGGIGRRVAH 139
Query: 116 RMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVL 175
+AFGM+VI + +++ S D++ +D++ + PL +T+ ++N+ +L
Sbjct: 140 LAKAFGMRVIAYTRSSV---DQNVDVISESPADLFRQSDFVLIAIPLTDKTRGMVNSRLL 196
Query: 176 KKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVI 235
+K + +VNVAR +V + ++ LK DV+ EP +E I
Sbjct: 197 ANARKNLTIVNVARADVVSKPDMIGFLKERSDVWYLSDVWWNEPEITETNL-----RNAI 251
Query: 236 VTPHLGASTKEAQIRVAVEIAEQFIALA 263
++PH+ + +A+++A + +
Sbjct: 252 LSPHVAGGMSGEIMDIAIQLAFENVRNF 279
>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD,
tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A
{Pseudomonas aeruginosa}
Length = 380
Score = 361 bits (928), Expect = e-124
Identities = 73/309 (23%), Positives = 128/309 (41%), Gaps = 33/309 (10%)
Query: 2 YDGLVVRSDTKVTAEVLQASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACE 61
D L+VRS T+V+ L S ++ VG G D++DL G+ +APG N +
Sbjct: 38 VDVLLVRSVTEVSRAALAGSPVRFVGTCTIGTDHLDLDYFAEAGIAWSSAPGCNARGVVD 97
Query: 62 LTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFG 121
+ A++ G +L +T V+G G++G + ++ G
Sbjct: 98 YVLGCLLAMAE------------------VRGADLAERTYGVVGAGQVGGRLVEVLRGLG 139
Query: 122 MKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQ----TKNLINAEVLKK 177
KV+ DP A + + + LE + AD I++HTPL T++L++ L
Sbjct: 140 WKVLVCDPP---RQAREPDGEFVSLERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLAA 196
Query: 178 CKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVT 237
+ G +VN +RG +VD AL L+ G ALDV+ EP + +I T
Sbjct: 197 LRPGTWLVNASRGAVVDNQALRRLLEGGADLEVALDVWEGEPQAD----PELAARCLIAT 252
Query: 238 PHLGASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNAPALAASRNPENTSWISLAR 297
PH+ + E ++R +I + + A + + + + + A
Sbjct: 253 PHIAGYSLEGKLRGTAQIYQAYCAWRGIAERVS----LQDVLPETWLAGLQLNPGCDPAW 308
Query: 298 SLGKISSQL 306
+L + +
Sbjct: 309 ALATLCRAV 317
>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural
genomics, PSI-2, P structure initiative; 1.90A
{Ralstonia solanacearum}
Length = 352
Score = 351 bits (904), Expect = e-121
Identities = 91/300 (30%), Positives = 144/300 (48%), Gaps = 25/300 (8%)
Query: 2 YDGLV-VRSDTKVTAEVL-QASNLQVVGRAG----TGVDNIDLTAATRKGVLVLNAPGGN 55
+ LV +R T+VT ++L + L+++ + G +IDL A T KGV+VL G +
Sbjct: 49 VEALVLIRERTRVTRQLLDRLPKLKIISQTGRVSRDAGGHIDLEACTDKGVVVLEGKG-S 107
Query: 56 FISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYT----------GTELYGKTLAVLG 105
++ ELT +L+ A R +PQ SLK G W + G L G+TL + G
Sbjct: 108 PVAPAELTWALVMAAQRRIPQYVASLKHGAWQQSGLKSTTMPPNFGIGRVLKGQTLGIFG 167
Query: 106 LGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLG-LEDIWPLADYITVHTPLIP 164
G+IG+ VA +AFGM V+ + S E A A + ++ +D ++VH L
Sbjct: 168 YGKIGQLVAGYGRAFGMNVLVWGRENSKERARADGFAVAESKDALFEQSDVLSVHLRLND 227
Query: 165 QTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQ 224
+T+++I L + K VN +R +V+EN ++ +L G G AA+DVF EP Q
Sbjct: 228 ETRSIITVADLTRMKPTALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFETEPIL--Q 285
Query: 225 TFELIKHPKVIVTPHLGASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNAPALAAS 284
L++ I TPH+G +E+ + + + N V N ALA +
Sbjct: 286 GHTLLRMENCICTPHIGYVERESYEMYFGIAFQNILDILQGNVDS-----VANPTALAPA 340
>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center
for structural genomics of infec diseases, csgid; HET:
NAD; 2.36A {Salmonella enterica subsp}
Length = 381
Score = 349 bits (897), Expect = e-120
Identities = 77/305 (25%), Positives = 130/305 (42%), Gaps = 30/305 (9%)
Query: 2 YDGLVVRSDTKVTAEVLQASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACE 61
D L+VRS TKV +L + + VG A G D++D + G+ APG N I+ E
Sbjct: 41 ADALMVRSVTKVNESLLSGTPINFVGTATAGTDHVDEAWLKQAGIGFSAAPGCNAIAVVE 100
Query: 62 LTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFG 121
S + L+ G L +T+ ++G+G +G + R++A G
Sbjct: 101 YVFSALLMLAER------------------DGFSLRDRTIGIVGVGNVGSRLQTRLEALG 142
Query: 122 MKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIP----QTKNLINAEVLKK 177
++ + DP A L+++ AD +T HTPL +T +L + ++++
Sbjct: 143 IRTLLCDPP---RAARGDEGDFRTLDELVQEADVLTFHTPLYKDGPYKTLHLADETLIRR 199
Query: 178 CKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVT 237
K G ++N RG +VD ALL L G LDV+ EP + L++ I T
Sbjct: 200 LKPGAILINACRGPVVDNAALLARLNAGQPLSVVLDVWEGEPDLNV---ALLEAVD-IGT 255
Query: 238 PHLGASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNAPALAASRNPENTSWISLAR 297
H+ T E + R ++ E + A + +++ +L AP +L R
Sbjct: 256 SHIAGYTLEGKARGTTQVFEAYSAFIGREQRV-ALETLLPAPEFGRITLHGPLDQPTLKR 314
Query: 298 SLGKI 302
+
Sbjct: 315 LAHLV 319
>2pi1_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, 3D-structure,
structural genomics, NPPSFA; HET: MSE NAD; 2.12A
{Aquifex aeolicus VF5} PDB: 3kb6_A*
Length = 334
Score = 317 bits (815), Expect = e-108
Identities = 84/294 (28%), Positives = 139/294 (47%), Gaps = 17/294 (5%)
Query: 2 YDGLVVRSDTKVTAEVLQA-SNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISAC 60
+ + V K+T E+L L+++ G D+IDL +KG+LV + P + S
Sbjct: 43 AELISVFVYDKLTEELLSKMPRLKLIHTRSVGFDHIDLDYCKKKGILVTHIPAYSPESVA 102
Query: 61 ELTCSLISALSRNVPQGCQSLKEGKWDRK-LYTGTELYGKTLAVLGLGRIGREVALRMQA 119
E T ++I L + + + +K+ + + EL TL V+G GRIG VA+ A
Sbjct: 103 EHTFAMILTLVKRLKRIEDRVKKLNFSQDSEILARELNRLTLGVIGTGRIGSRVAMYGLA 162
Query: 120 FGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCK 179
FGMKV+ +D + ED + L+++ +D I++H P +T ++IN E + K
Sbjct: 163 FGMKVLCYDVVKR-EDLKEKGCVYTSLDELLKESDVISLHVPYTKETHHMINEERISLMK 221
Query: 180 KGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPP-------------KSEQTF 226
GV ++N ARG +VD +AL + + G G LDVF +E K+ +
Sbjct: 222 DGVYLINTARGKVVDTDALYRAYQRGKFSGLGLDVFEDEEILILKKYTEGKATDKNLKIL 281
Query: 227 ELIKHPKVIVTPHLGASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNAPA 280
EL VI+TPH+ T ++ R+ E + A + + V P+
Sbjct: 282 ELACKDNVIITPHIAYYTDKSLERIREETVKVVKAFVKGDLEQIKGNFV-VGPS 334
>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate
dehydrogenase, D-lactate dehydrogenas oxidoreductase;
HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4
c.23.12.1
Length = 333
Score = 316 bits (812), Expect = e-107
Identities = 74/294 (25%), Positives = 127/294 (43%), Gaps = 21/294 (7%)
Query: 2 YDGLVVRSDTKVTAEVLQ---ASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFIS 58
+DG+ T A V + A ++ + G DNID+TA + G+ + N P + +
Sbjct: 45 FDGINSLQTTPYAAGVFEKMHAYGIKFLTIRNVGTDNIDMTAMKQYGIRLSNVPAYSPAA 104
Query: 59 ACELTCSLISALSRNVPQGCQSLKEGKWDRK-LYTGTELYGKTLAVLGLGRIGREVALRM 117
E + L RN+ + L+ G +++ + G EL +T+ V+G G IG+
Sbjct: 105 IAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTFIGKELGQQTVGVMGTGHIGQVAIKLF 164
Query: 118 QAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKK 177
+ FG KVI +DP + + LED++ +D I +H P I Q ++IN
Sbjct: 165 KGFGAKVIAYDPYP--MKGDHPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNL 222
Query: 178 CKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPP-----KSEQTFE----- 227
K G V+N AR ++D A+L +LK G G +D + E +F+
Sbjct: 223 MKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWD 282
Query: 228 -LIKHPKVIVTPHLGASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNAPA 280
L+ P V+++PH+ T+ A + + + + PA
Sbjct: 283 ELLGMPNVVLSPHIAYYTETAVHNMVYFSLQHLVDFLTKGE----TSTEVTGPA 332
>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase,
reversible interconversion of pyruvate INTO D-lactate;
1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4
c.23.12.1 PDB: 1j49_A* 2dld_A*
Length = 333
Score = 316 bits (811), Expect = e-107
Identities = 77/280 (27%), Positives = 123/280 (43%), Gaps = 15/280 (5%)
Query: 2 YDGLVVRSDTKVTAEVLQA---SNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFIS 58
DG+VV AE LQA + + + GVDNID+ A G + N P + +
Sbjct: 47 ADGVVVYQQLDYIAETLQALADNGITKMSLRNVGVDNIDMAKAKELGFQITNVPVYSPNA 106
Query: 59 ACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQ 118
E + + R + + G E+ + + V+G G IG+ M+
Sbjct: 107 IAEHAAIQAARILRQDKAMDEKVARHDLRWAPTIGREVRDQVVGVVGTGHIGQVFMQIME 166
Query: 119 AFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKC 178
FG KVI +D + + K L+D++ AD I++H P +P ++IN E + K
Sbjct: 167 GFGAKVITYDIFRN-PELEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKM 225
Query: 179 KKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPP-----KSEQTF------E 227
K+ V +VNV+RG +VD +A++ L G G A+DV+ E + F +
Sbjct: 226 KQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLAD 285
Query: 228 LIKHPKVIVTPHLGASTKEAQIRVAVEIAEQFIALANTNP 267
LI P V+VTP T A + V+ + + L
Sbjct: 286 LIARPNVLVTPKTAFYTTHAVRNMVVKAFDNNLELVEGKE 325
>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid
dehydrogenase, oxidoreductase; HET: NAD; 1.70A
{Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A*
4e5m_A*
Length = 330
Score = 314 bits (806), Expect = e-106
Identities = 79/278 (28%), Positives = 134/278 (48%), Gaps = 10/278 (3%)
Query: 2 YDGLVVRSDTKVTAEVLQA-SNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISAC 60
++ +V A+ LQA L+V+G A G DN D+ A T +GV + P +
Sbjct: 46 AQAMMAFMPDRVDADFLQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTA 105
Query: 61 ELTCSLISALSRNVPQGCQSLKEGKWD--RKLYTGTELYGKTLAVLGLGRIGREVALRMQ 118
EL L L R++ ++ GK+ + + GT L T+ LG+G IG +A R+Q
Sbjct: 106 ELAIGLAVGLGRHLRAADAFVRSGKFRGWQPRFYGTGLDNATVGFLGMGAIGLAMADRLQ 165
Query: 119 AFGMKVIGFDP-MVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKK 177
+G + + + + +L + + +++ +D+I + PL T +L+NAE+L
Sbjct: 166 GWGATLQYHEAKALDTQTEQRLGLRQVACSELFASSDFILLALPLNADTLHLVNAELLAL 225
Query: 178 CKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTF-----ELIKHP 232
+ G +VN RG +VDE A+L +L+ G GG A DVF E L+ HP
Sbjct: 226 VRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHP 285
Query: 233 KVIVTPHLGASTKEAQIRVAVEIAEQFIA-LANTNPQY 269
+ TPH+G++ + ++ + A+ + LA P
Sbjct: 286 NTLFTPHIGSAVRAVRLEIERCAAQNILQALAGERPIN 323
>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural
variant of the BAB rossmann fold, oxidoreductase; 1.98A
{Acidaminococcus fermentans}
Length = 331
Score = 307 bits (788), Expect = e-104
Identities = 71/282 (25%), Positives = 118/282 (41%), Gaps = 18/282 (6%)
Query: 2 YDGLVVRSDTKVTAEVLQA---SNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFIS 58
+D +++R + + L ++ + G D+ID A G + P + +
Sbjct: 46 FDAVILRGNCFANKQNLDIYKKLGVKYILTRTAGTDHIDKEYAKELGFPMAFVPRYSPNA 105
Query: 59 ACELTCSLISALSRNVPQGCQSLKEGKWDRK-LYTGTELYGKTLAVLGLGRIGREVALRM 117
EL + L R+ + + E+ T+ V+GLGRIGR A
Sbjct: 106 IAELAVTQAMMLLRHTAYTTSRTAKKNFKVDAFMFSKEVRNCTVGVVGLGRIGRVAAQIF 165
Query: 118 QAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKK 177
G VIG D + + L+++ +D IT+H P I + ++ + LKK
Sbjct: 166 HGMGATVIGEDVFEI--KGIEDYCTQVSLDEVLEKSDIITIHAPYIKENGAVVTRDFLKK 223
Query: 178 CKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPP-----KSEQTFE----- 227
K G +VN ARG +VD A++++++ G GG DV E Q E
Sbjct: 224 MKDGAILVNCARGQLVDTEAVIEAVESGKLGGYGCDVLDGEASVFGKDLEGQKLENPLFE 283
Query: 228 --LIKHPKVIVTPHLGASTKEAQIRVAVEIAEQFIALANTNP 267
+ +P+V++TPHLG+ T EA + + LA T
Sbjct: 284 KLVDLYPRVLITPHLGSYTDEAVKNMVEVSYQNLKDLAETGD 325
>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST
genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus
horikoshii} PDB: 2dbr_A* 2dbz_A*
Length = 334
Score = 294 bits (754), Expect = 7e-99
Identities = 96/277 (34%), Positives = 155/277 (55%), Gaps = 12/277 (4%)
Query: 2 YDGLVVRSDTKVTAEVL-QASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISAC 60
D LV ++ EV A L++V G DNID+ AT++G+ V N P +
Sbjct: 46 VDALVTMLSERIDKEVFENAPKLRIVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATA 105
Query: 61 ELTCSLISALSRNVPQGCQSLKEGKWDRK-------LYTGTELYGKTLAVLGLGRIGREV 113
+L +L+ A +R+V +G + ++ G+W ++ + G ++YGKT+ ++GLGRIG+ +
Sbjct: 106 DLAFALLLATARHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAI 165
Query: 114 ALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAE 173
A R + F M+++ + E +LN LED+ +D++ + PL +T +LIN E
Sbjct: 166 AKRAKGFNMRILYYSRTRKEEVERELNAEFKPLEDLLRESDFVVLAVPLTRETYHLINEE 225
Query: 174 VLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPK 233
LK KK ++N+ARG +VD NAL+ +LK G GA LDVF EEP +E EL K
Sbjct: 226 RLKLMKKTAILINIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYYNE---ELFKLDN 282
Query: 234 VIVTPHLGASTKEAQIRVAVEIAEQFIA-LANTNPQY 269
V++TPH+G+++ A+ +A +A+ IA P
Sbjct: 283 VVLTPHIGSASFGAREGMAELVAKNLIAFKRGEIPPT 319
>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum
aerophilum} SCOP: c.2.1.4 c.23.12.1
Length = 303
Score = 286 bits (735), Expect = 2e-96
Identities = 61/270 (22%), Positives = 104/270 (38%), Gaps = 10/270 (3%)
Query: 1 KYDGLVVRSDTKVTAEVL-QASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISA 59
+ +++TAE L + L+ + G+D++ + V V G N +
Sbjct: 28 DLGNVEAALVSRITAEELAKMPRLKFIQVVTAGLDHLPWESIPP-HVTVAGNAGSNADAV 86
Query: 60 CELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQA 119
E +L+ A + + Q + +K G + R + + G+ +AVLGLG IG V + A
Sbjct: 87 AEFALALLLAPYKRIIQYGEKMKRGDYGRDVE-IPLIQGEKVAVLGLGEIGTRVGKILAA 145
Query: 120 FGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCK 179
G +V GF N LE+ A PL T+ L+ + L
Sbjct: 146 LGAQVRGFSRTPKEGPWRFTN----SLEEALREARAAVCALPLNKHTRGLVKYQHLALMA 201
Query: 180 KGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPH 239
+ VNV R ++D + +L LK A DV+ ++ E P V+ TP
Sbjct: 202 EDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAKDA-EFFSLPNVVATPW 260
Query: 240 LGAST--KEAQIRVAVEIAEQFIALANTNP 267
+ + ++ +E I A
Sbjct: 261 VAGGYGNERVWRQMVMEAVRNLITYATGGR 290
>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A));
2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4
c.23.12.1
Length = 320
Score = 263 bits (675), Expect = 4e-87
Identities = 74/273 (27%), Positives = 125/273 (45%), Gaps = 10/273 (3%)
Query: 2 YDGLVVRSDTKVTAEVLQA--SNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISA 59
D L++ + K EV+ N++ + G D+IDL A +G+ V NAP G ++
Sbjct: 45 VDALLITLNEKCRKEVIDRIPENIKCISTYSIGFDHIDLDACKARGIKVGNAPHGVTVAT 104
Query: 60 CELTCSLISALSRNVPQGCQSLKEGKWDR---KLYTGTELYGKTLAVLGLGRIGREVALR 116
E+ L+ +R +G + ++ W G +L KTL + G G IG+ +A R
Sbjct: 105 AEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKR 164
Query: 117 MQAFGMKVIGFDP-MVSVEDAAKLNIASLG-LEDIWPLADYITVHTPLIPQTKNLINAEV 174
Q F M + FD S D A L+ + ++ + +++ P P+T+ N
Sbjct: 165 AQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKAT 224
Query: 175 LKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKV 234
+K +G VVN ARG +VD ++ +L+ G A DVF EP +E P
Sbjct: 225 IKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEPNINE---GYYDLPNT 281
Query: 235 IVTPHLGASTKEAQIRVAVEIAEQFIALANTNP 267
+ PH+G++ +A+ +A + + AL
Sbjct: 282 FLFPHIGSAATQAREDMAHQANDLIDALFGGAD 314
>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics,
riken structur genomics/proteomics initiative, RSGI,
NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}
Length = 311
Score = 263 bits (674), Expect = 4e-87
Identities = 93/270 (34%), Positives = 148/270 (54%), Gaps = 12/270 (4%)
Query: 2 YDGLVVRSDTKVTAEVL-QASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISAC 60
GL+ + ++ AEV+ +A L+V+ GVD++DL AA +G+ V + PG +
Sbjct: 44 AVGLIPTVEDRIDAEVMDRAKGLKVIACYSVGVDHVDLEAARERGIRVTHTPGVLTEATA 103
Query: 61 ELTCSLISALSRNVPQGCQSLKEGKWDR---KLYTGTELYGKTLAVLGLGRIGREVALRM 117
+LT +L+ A++R V +G ++G W +L G +L G TL ++G+GRIG+ VA R
Sbjct: 104 DLTLALLLAVARRVVEGAAYARDGLWKAWHPELLLGLDLQGLTLGLVGMGRIGQAVAKRA 163
Query: 118 QAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKK 177
AFGM+V+ L L LE++ AD +++HTPL P+T L+N E L
Sbjct: 164 LAFGMRVVYHAR-----TPKPLPYPFLSLEELLKEADVVSLHTPLTPETHRLLNRERLFA 218
Query: 178 CKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVT 237
K+G ++N ARG +VD AL+++L+ GH GA LDV EP L P ++T
Sbjct: 219 MKRGAILLNTARGALVDTEALVEALR-GHLFGAGLDVTDPEPLPPGH--PLYALPNAVIT 275
Query: 238 PHLGASTKEAQIRVAVEIAEQFIALANTNP 267
PH+G++ + + R+A E +A+
Sbjct: 276 PHIGSAGRTTRERMAEVAVENLLAVLEGRE 305
>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein
structure initiative; 2.20A {Lactobacillus plantarum}
Length = 324
Score = 258 bits (661), Expect = 7e-85
Identities = 64/263 (24%), Positives = 110/263 (41%), Gaps = 3/263 (1%)
Query: 6 VVRSDTKVTAEVL-QASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTC 64
+ + + + + L+ V GVD + L A GV+V N G + + E
Sbjct: 44 MYGNHPLLKTILARPTNQLKFVQVISAGVDYLPLKALQAAGVVVANTSGIHADAISESVL 103
Query: 65 SLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKV 124
+ + ++ R + + + T + L G+ L + G G+IG+ +A + A GM V
Sbjct: 104 AAMLSVVRGYHAAWLNQRGARQWALPMTTSTLTGQQLLIYGTGQIGQSLAAKASALGMHV 163
Query: 125 IGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRV 184
IG + D +A D A++I PL P T +L + E+ ++ K+ +
Sbjct: 164 IGVNTTGHPADHFHETVAFTATADALATANFIVNALPLTPTTHHLFSTELFQQTKQQPML 223
Query: 185 VNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGAST 244
+N+ RG VD AL+ +L AALDV EP ++ L + V++TPH+
Sbjct: 224 INIGRGPAVDTTALMTALDHHQLSMAALDVTEPEPLPTDH--PLWQRDDVLITPHISGQI 281
Query: 245 KEAQIRVAVEIAEQFIALANTNP 267
+ V A F
Sbjct: 282 AHFRATVFPIFAANFAQFVKDGT 304
>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase,
oxidoreductase; 1.85A {Rhodotorula graminis} PDB:
2w2l_A* 2w2l_D* 2w2k_B
Length = 348
Score = 245 bits (627), Expect = 2e-79
Identities = 71/283 (25%), Positives = 120/283 (42%), Gaps = 21/283 (7%)
Query: 1 KYDGLVVRSDTKVT------AEVLQA--SNLQVVGRAGTGVDNIDLTAATRKGVLVLNAP 52
++ ++ + T A+++ S+L+V AG G D +DL A +GV N+
Sbjct: 51 DFEAIIKLAVENGTESYPWNADLISHLPSSLKVFAAAGAGFDWLDLDALNERGVAFANSR 110
Query: 53 GGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYT-------GTELYGKTLAVLG 105
G + +L LI ++ R ++ + G + G L +G
Sbjct: 111 GAGDTATSDLALYLILSVFRLASYSERAARTGDPETFNRVHLEIGKSAHNPRGHVLGAVG 170
Query: 106 LGRIGREVALR-MQAFGMKVIGFDP-MVSVEDAAKLNIASLG-LEDIWPLADYITVHTPL 162
LG I +E+A + + GMK++ +D E L + LE++ +D ++V P
Sbjct: 171 LGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKALGAERVDSLEELARRSDCVSVSVPY 230
Query: 163 IPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKS 222
+ T +LI+ K G R+VN ARG ++ ++AL+ +LK G A LDV EP S
Sbjct: 231 MKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPQVS 290
Query: 223 EQTFELIKHPKVIVTPHLGASTKEAQIRVAVEIAEQFIALANT 265
+ ELI+ V +T H+G E
Sbjct: 291 K---ELIEMKHVTLTTHIGGVAIETFHEFERLTMTNIDRFLLQ 330
>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann
fold, formate/glycerate dehydrogenase substr binding
domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens}
PDB: 2wwr_A 2h1s_A 2q50_A
Length = 330
Score = 243 bits (623), Expect = 4e-79
Identities = 70/272 (25%), Positives = 128/272 (47%), Gaps = 8/272 (2%)
Query: 2 YDGLVVRSDTKVTAEVLQA--SNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISA 59
GL+ V +L A +NL+V+ G+D++ L ++G+ V P +
Sbjct: 54 AHGLLCLLSDHVDKRILDAAGANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTT 113
Query: 60 CELTCSLISALSRNVPQGCQSLKEGKWDR---KLYTGTELYGKTLAVLGLGRIGREVALR 116
EL SL+ R +P+ + +K G W G L T+ ++GLGRIG+ +A R
Sbjct: 114 AELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARR 173
Query: 117 MQAFGMKVIGFD-PMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVL 175
++ FG++ + E+AA+ + ++ +D+I V L P T+ L N +
Sbjct: 174 LKPFGVQRFLYTGRQPRPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFF 233
Query: 176 KKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVI 235
+K K+ +N++RG +V+++ L +L G A LDV EP + L+ +
Sbjct: 234 QKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNH--PLLTLKNCV 291
Query: 236 VTPHLGASTKEAQIRVAVEIAEQFIALANTNP 267
+ PH+G++T + +++ A +A P
Sbjct: 292 ILPHIGSATHRTRNTMSLLAANNLLAGLRGEP 323
>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural
genomics, protein structure initiative, nysgrc, P
biology; 1.70A {Polaromonas SP}
Length = 345
Score = 235 bits (601), Expect = 1e-75
Identities = 67/271 (24%), Positives = 127/271 (46%), Gaps = 8/271 (2%)
Query: 2 YDGLVVRSDTKVTAEVLQA--SNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISA 59
+ L V + +TAEV++ L+ + G D+ID+ AA G+ VL+ P +
Sbjct: 72 AEVLFVTATEAITAEVIRKLQPGLKTIATLSVGYDHIDMAAARSLGIKVLHTPDVLSDAC 131
Query: 60 CELTCSLISALSRNVPQGCQSLKEGKWDR---KLYTGTELYGKTLAVLGLGRIGREVALR 116
E+ L+ R + + ++ G W G L G+ L + G+GRIGR +A R
Sbjct: 132 AEIAMLLVLNACRRGYEADRMVRSGSWPGWGPTQLLGMGLTGRRLGIFGMGRIGRAIATR 191
Query: 117 MQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLK 176
+ FG+ + + + I L+ + +D + P P+ K ++ + +
Sbjct: 192 ARGFGLAIHYHNRTRLSHALEEGAIYHDTLDSLLGASDIFLIAAPGRPELKGFLDHDRIA 251
Query: 177 KCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIV 236
K +G V+N++RG +++++AL+++L+ H A LDVF EP + +
Sbjct: 252 KIPEGAVVINISRGDLINDDALIEALRSKHLFAAGLDVFANEPAIDP---RYRSLDNIFL 308
Query: 237 TPHLGASTKEAQIRVAVEIAEQFIALANTNP 267
TPH+G++T E + + + + AL ++
Sbjct: 309 TPHIGSATHETRDAMGWLLIQGIEALNQSDV 339
>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein,
substrate binding domain, cofactor bindi domain,
oxidoreductase; 1.47A {Solenostemon scutellarioides}
PDB: 3baz_A*
Length = 333
Score = 217 bits (556), Expect = 5e-69
Identities = 76/249 (30%), Positives = 118/249 (47%), Gaps = 8/249 (3%)
Query: 1 KYDGLVVRSDTKVTAEVLQA-SNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISA 59
+V S+ AE++ A L++V G+D +DL KGV V N P
Sbjct: 65 SIRAVVGNSNAGADAELIDALPKLEIVSSFSVGLDKVDLIKCEEKGVRVTNTPDVLTDDV 124
Query: 60 CELTCSLISALSRNVPQGCQSLKEGKWDRKLYT-GTELYGKTLAVLGLGRIGREVALRMQ 118
+L LI A+ R + + + ++ G W + T+ GK + ++GLGRIG VA R +
Sbjct: 125 ADLAIGLILAVLRRICECDKYVRRGAWKFGDFKLTTKFSGKRVGIIGLGRIGLAVAERAE 184
Query: 119 AFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKC 178
AF + F + S+ ++ +D + V PL P+T ++IN EV+
Sbjct: 185 AFDCPISYFSRS-KKPNTNYTYYGSV--VELASNSDILVVACPLTPETTHIINREVIDAL 241
Query: 179 KKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTP 238
++N+ RG VDE L+ +L G GGA LDVF EP E +L V++ P
Sbjct: 242 GPKGVLINIGRGPHVDEPELVSALVEGRLGGAGLDVFEREPEVPE---KLFGLENVVLLP 298
Query: 239 HLGASTKEA 247
H+G+ T E
Sbjct: 299 HVGSGTVET 307
>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc,
oxidoreductase; 2.50A {Sinorhizobium meliloti}
Length = 340
Score = 217 bits (556), Expect = 6e-69
Identities = 77/250 (30%), Positives = 123/250 (49%), Gaps = 9/250 (3%)
Query: 1 KYDGLVVRSDTKVTAEVL-QASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISA 59
+ ++ E + + +L ++ G G D +DL A R+ + V PG
Sbjct: 71 SIRAVATGGGAGLSNEWMEKLPSLGIIAINGVGTDKVDLARARRRNIDVTTTPGVLADDV 130
Query: 60 CELTCSLISALSRNVPQGCQSLKEGKWDRKLYT--GTELYGKTLAVLGLGRIGREVALRM 117
+L +L+ A+ R V G + ++EG+W G GK + VLGLG+IGR +A R
Sbjct: 131 ADLGIALMLAVLRRVGDGDRLVREGRWAAGEQLPLGHSPKGKRIGVLGLGQIGRALASRA 190
Query: 118 QAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKK 177
+AFGM V ++ ++ + S D+ +D + V T+N+++A +L+
Sbjct: 191 EAFGMSVRYWNRS-TLSGVDWIAHQSP--VDLARDSDVLAVCVAASAATQNIVDASLLQA 247
Query: 178 CKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVT 237
VVNVARG +VDE+AL+++LK G GA LDVF EP E P ++
Sbjct: 248 LGPEGIVVNVARGNVVDEDALIEALKSGTIAGAGLDVFVNEPAIRS---EFHTTPNTVLM 304
Query: 238 PHLGASTKEA 247
PH G++T E
Sbjct: 305 PHQGSATVET 314
>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein;
structural genomics; 1.80A {Aeromonas salmonicida subsp}
Length = 324
Score = 186 bits (474), Expect = 7e-57
Identities = 74/259 (28%), Positives = 109/259 (42%), Gaps = 27/259 (10%)
Query: 19 QASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGC 78
+A+ L GVD + L A R+ + N G E + +L R +P
Sbjct: 64 KANKLSWFQSTYAGVDVL-LDARCRRDYQLTNVRGIFGPLMSEYVFGHLLSLMRQLPLYR 122
Query: 79 QSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIG----------FD 128
+ K+ W Y L G+TL +LG G IG+ +A + FGMKV+G FD
Sbjct: 123 EQQKQRLWQSHPYQ--GLKGRTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGRERAGFD 180
Query: 129 PMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVA 188
+ + L + AD I P +T +L A + CK G + NV
Sbjct: 181 QVYQLPA----------LNKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVG 230
Query: 189 RGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQ 248
RG ++E LL +L+ G G A LDVF +EP ++ L P +I+TPH A +
Sbjct: 231 RGNAINEGDLLTALRTGKLGMAVLDVFEQEPLPADS--PLWGQPNLIITPHNSAYSFPD- 287
Query: 249 IRVAVEIAEQFIALANTNP 267
VA +I + P
Sbjct: 288 -DVAQIFVRNYIRFIDGQP 305
>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center
for structural genomics of infec diseases, csgid; 2.10A
{Salmonella enterica subsp} PDB: 3kbo_A
Length = 315
Score = 175 bits (447), Expect = 5e-53
Identities = 65/270 (24%), Positives = 97/270 (35%), Gaps = 34/270 (12%)
Query: 15 AEVLQASNLQVVGRAGTGVDNIDLTAATR-----KGVLVLNAPGGNFISA-CELTCSLIS 68
E+L L+ V G GVD I + + E S +
Sbjct: 52 VEMLAGRRLKAVFVLGAGVDAILSKLNAHPEMLDASIPLFRLEDTGMGLQMQEYAVSQVL 111
Query: 69 ALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIG-- 126
R + W ++ ++G G +G +VA +QA+G +
Sbjct: 112 HWFRRFDDYQALKNQALWKPLPEY--TREEFSVGIMGAGVLGAKVAESLQAWGFPLRCWS 169
Query: 127 --------FDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKC 178
+ V E L + P QT +IN+E+L +
Sbjct: 170 RSRKSWPGVESYVGRE----------ELRAFLNQTRVLINLLPNTAQTVGIINSELLDQL 219
Query: 179 KKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEP-PKSEQTFELIKHPKVIVT 237
G V+N+ARG V E LL +L G GA LDVF +EP P+ L +HP+V +T
Sbjct: 220 PDGAYVLNLARGVHVQEADLLAALDSGKLKGAMLDVFSQEPLPQESP---LWRHPRVAMT 276
Query: 238 PHLGASTKEAQIRVAVEIAEQFIALANTNP 267
PH+ A T+ A I+ L P
Sbjct: 277 PHIAAVTRPA--EAIDYISRTITQLEKGEP 304
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus
halodurans}
Length = 293
Score = 76.1 bits (187), Expect = 6e-16
Identities = 28/124 (22%), Positives = 45/124 (36%), Gaps = 11/124 (8%)
Query: 92 TGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFD-PMVSVEDAAKLNIASLGLEDI- 149
T ++G +AVLGLGR+G VA + A G KV + A++ + +
Sbjct: 149 TDFTIHGANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIAEMGMEPFHISKAA 208
Query: 150 --WPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARG--GIVDENALLDSLKCG 205
D P ++ A VL + V+++A G A +K
Sbjct: 209 QELRDVDVCINTIP-----ALVVTANVLAEMPSHTFVIDLASKPGGTDFRYAEKRGIKAL 263
Query: 206 HCGG 209
G
Sbjct: 264 LVPG 267
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 55.2 bits (132), Expect = 1e-08
Identities = 59/360 (16%), Positives = 92/360 (25%), Gaps = 146/360 (40%)
Query: 1 KYDGLVVRSDTKVTA--EVLQ----ASNLQVVGRAGTGVDNIDLTAATRKGVLVLNA--- 51
KY+ V R + L A N+ + G G+G K + L+
Sbjct: 128 KYN--VSRLQ-PYLKLRQALLELRPAKNVLIDGVLGSG-----------KTWVALDVCLS 173
Query: 52 -------PGGNF---ISACELTCSLISAL-----------------SRNVPQGCQSLKEG 84
F + C +++ L S N+ S++
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA- 232
Query: 85 KWDRKLYTGTELYGKTLAVLGLGRIGREV--ALRMQAFGMK----VIGFDPMVSVEDAAK 138
R+L ++ Y L VL V A AF + + V D
Sbjct: 233 -ELRRLLK-SKPYENCLLVL------LNVQNAKAWNAFNLSCKILLTTRF--KQVTDF-- 280
Query: 139 LNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENAL 198
L+ T H L + L EV +L
Sbjct: 281 -------------LSAATTTHISLDHHSMTLTPDEVK---------------------SL 306
Query: 199 LDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIRVAVEIAEQ 258
L LK C L P + T +P+ + + S ++
Sbjct: 307 L--LKYLDCRPQDL------PREVLTT-----NPRRLSI--IAESIRDGLATW------D 345
Query: 259 FIALANTNPQYTSIQGVLNA--PALAASRN--------PENTSWISLARSLGKISSQLLQ 308
N + T I+ LN PA R P + I + LL
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLEPAE--YRKMFDRLSVFPPSA----------HIPTILLS 393
Score = 43.7 bits (102), Expect = 6e-05
Identities = 42/269 (15%), Positives = 72/269 (26%), Gaps = 94/269 (34%)
Query: 1 KY-DGLVVRSDTKV-TAEVLQASNLQ----VVGRAGTGVDNIDLTAATRKGVLVLNAPGG 54
Y + L+V + V A+ A NL + R D L+AAT + + +
Sbjct: 242 PYENCLLVLLN--VQNAKAWNAFNLSCKILLTTRFKQVTD--FLSAATTTHISLDHHSMT 297
Query: 55 -----------NFIS---------ACE---LTCSLISALSRNVPQGCQSLKEGKWDRKLY 91
++ S+I+ R+ WD +
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL--------ATWDNWKH 349
Query: 92 TGTELYGKT----LAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLE 147
+ L VL E A + F + F A +I ++ L
Sbjct: 350 VNCDKLTTIIESSLNVL-------EPAEYRKMFDRLSV-FP-----PSA---HIPTILLS 393
Query: 148 DIWPLADYITVHTPLIPQTKNLINAEVLKKC-KKGVRVVNVARGGIVDENALLDSLKCGH 206
IW V V+ K K + V + S+
Sbjct: 394 LIWFDVIKSDV-------------MVVVNKLHKYSL----VEK----QPKESTISI---P 429
Query: 207 CGGAALDVFCEEPPKSEQTFELIKHPKVI 235
++ E K E + L H ++
Sbjct: 430 ------SIYLELKVKLENEYAL--HRSIV 450
Score = 33.3 bits (75), Expect = 0.12
Identities = 38/232 (16%), Positives = 63/232 (27%), Gaps = 58/232 (25%)
Query: 2 YDGLVV-RSDTKVTAEVLQASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISAC 60
+D L V + + L ++ D + + K LV P
Sbjct: 375 FDRLSVFPPSAHIPTIL-----LSLIWFDVIKSDVMVVVNKLHKYSLVEKQP-------K 422
Query: 61 ELTCSL--ISALSRNVPQGCQSLKEGKWDRKL---YTGTELY-GKTLAVLGLGR-----I 109
E T S+ I + + E R + Y + + L L + I
Sbjct: 423 ESTISIPSIYLELK-----VKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI 477
Query: 110 GR-----EVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLAD---------- 154
G E RM F M + F + K+ S + +
Sbjct: 478 GHHLKNIEHPERMTLFRMVFLDFRFL-----EQKIRHDSTAWNASGSILNTLQQLKFYKP 532
Query: 155 YITVHTPLIPQT-----KNLINAEVLKKCKKGVRVVNVA----RGGIVDENA 197
YI + P + L E C K ++ +A I +E
Sbjct: 533 YICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAH 584
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.4 bits (112), Expect = 5e-06
Identities = 46/278 (16%), Positives = 74/278 (26%), Gaps = 115/278 (41%)
Query: 76 QGCQSLKEGK------------WDR-KLYTGTELYG-----------KTLAVLGLGRIGR 111
QG Q G W+R + + YG L + G G+
Sbjct: 1624 QGSQEQGMGMDLYKTSKAAQDVWNRADNHF-KDTYGFSILDIVINNPVNLTIHFGGEKGK 1682
Query: 112 EVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADY----ITVHTP--LIPQ 165
+R M F+ ++ D L E I+ + T + L+
Sbjct: 1683 --RIRENYSAMI---FE---TIVDG------KLKTEKIFKEINEHSTSYTFRSEKGLLSA 1728
Query: 166 TKN------LINA---EVLKK----------------------CKKGV-------RVVNV 187
T+ L+ E LK V VV
Sbjct: 1729 TQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVF- 1787
Query: 188 ARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEA 247
RG + D L + G A++ P + AS +
Sbjct: 1788 YRGMTMQVAVPRDELGRSNYGMIAIN------------------PGRVA-----ASFSQE 1824
Query: 248 QIRVAVE-IAEQ---FIALANTN-P--QYTSIQGVLNA 278
++ VE + ++ + + N N QY G L A
Sbjct: 1825 ALQYVVERVGKRTGWLVEIVNYNVENQQY-VAAGDLRA 1861
Score = 37.3 bits (86), Expect = 0.008
Identities = 68/352 (19%), Positives = 111/352 (31%), Gaps = 113/352 (32%)
Query: 2 YDGLVVRSDTKVTAEVLQ---ASNLQVVGRAGTGVDNID-LTAATRKGVLVLNAPGGNFI 57
Y LV K +AE L + L G++ ++ L + P +++
Sbjct: 180 YHVLV-GDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSN-------TPDKDYL 231
Query: 58 SACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRM 117
+ ++C LI + Q Y T +LG E+ +
Sbjct: 232 LSIPISCPLIGVI-----QLAH-----------------YVVTAKLLGFTP--GELRSYL 267
Query: 118 QAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINA-EVLK 176
+ G +V+ A IA D W + ++ A VL
Sbjct: 268 K--GATGHSQG-LVT---AVA--IAE---TDSW--ESFF----------VSVRKAITVLF 304
Query: 177 KCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAA--LDVFCEEPPKSEQTFELIKHPKV 234
GVR + + L DSL+ G + L + EQ + +
Sbjct: 305 FI--GVRCYEAYPNTSLPPSILEDSLENNE-GVPSPMLSI---SNLTQEQVQDYVNK--- 355
Query: 235 IVTPHLGASTKEAQIRVAVEIAEQFIALANT--------NPQYTSIQGV------LNAPA 280
HL A Q+ I+L N PQ S+ G+ AP+
Sbjct: 356 -TNSHLPA---GKQV---------EISLVNGAKNLVVSGPPQ--SLYGLNLTLRKAKAPS 400
Query: 281 -LAASRNPENTSWISLARSLGKISSQLLQTST-FSS----TAFSLVTQDITN 326
L SR P + R L K S++ L ++ F S A L+ +D+
Sbjct: 401 GLDQSRIPFS------ERKL-KFSNRFLPVASPFHSHLLVPASDLINKDLVK 445
Score = 37.0 bits (85), Expect = 0.009
Identities = 59/340 (17%), Positives = 101/340 (29%), Gaps = 118/340 (34%)
Query: 16 EVLQASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLI-----SAL 70
L+ +++ + A + D T K ++ N+I+A + SAL
Sbjct: 94 CYLEGNDIHAL--AAKLLQENDTTLVKTKELIK------NYITARIMAKRPFDKKSNSAL 145
Query: 71 SRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPM 130
R V +G + +L A+ G G Q G F+
Sbjct: 146 FRAVGEG---------NAQLV----------AIFG----G-------Q--GNTDDYFE-- 171
Query: 131 VSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLIN--AEVLKKCKKGVRVVNVA 188
E L D++ Y L+ +LI AE L + +
Sbjct: 172 ---E-----------LRDLY--QTY----HVLV---GDLIKFSAETLSELIRTTLDAEKV 208
Query: 189 RGGIVDENALLDSLKCGHCGGAALDV-FCEEPPKSEQTFELI-----KHPKVIVTPH-LG 241
++ L++ D + P S LI H +VT LG
Sbjct: 209 FTQGLNILEWLEN------PSNTPDKDYLLSIPIS---CPLIGVIQLAH--YVVTAKLLG 257
Query: 242 ASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNAPALAASRNPENTSWISLARSLGK 301
+ E + QG++ A A+A + SW S S+ K
Sbjct: 258 FTPGE--------LRSYLKGAT------GHSQGLVTAVAIAET-----DSWESFFVSVRK 298
Query: 302 ISSQLLQ-----TSTFSSTAF--SLVTQDITNV--TSSTM 332
+ L + +T+ S++ + N S M
Sbjct: 299 AITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPM 338
Score = 36.6 bits (84), Expect = 0.012
Identities = 47/291 (16%), Positives = 87/291 (29%), Gaps = 101/291 (34%)
Query: 17 VLQASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQ 76
V+Q ++ V + G +L + + G + L++A+
Sbjct: 243 VIQLAHYVVTAKL-LGFTPGELRSYLK-GATGHSQ-------------GLVTAV---AIA 284
Query: 77 GCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQ-AFGMKVIGFD------- 128
S W+ + K + VL IG +R A+ +
Sbjct: 285 ETDS-----WES-FF---VSVRKAITVLFF--IG----VRCYEAYPNTSLPPSILEDSLE 329
Query: 129 -------PMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTK-NLINAEVLKKCKK 180
PM+S+ + L E + + H P Q + +L+N
Sbjct: 330 NNEGVPSPMLSISN--------LTQEQVQDYVNKTNSHLPAGKQVEISLVN--------- 372
Query: 181 GVRVVNVARG------GIVDENALLDSLKCGHCGGAALDV----FCEEPPKSEQTFEL-I 229
G + + V+ G G+ N L K + LD F E K F L +
Sbjct: 373 GAKNLVVS-GPPQSLYGL---NLTLRKAKA----PSGLDQSRIPFSERKLKFSNRF-LPV 423
Query: 230 K---HPKVIVTPHLGASTKEAQIRVAVEIAEQFIALANTN---PQYTSIQG 274
H + L A + ++ + ++ + P Y + G
Sbjct: 424 ASPFH-----SHLL----VPASDLINKDLVKNNVSFNAKDIQIPVYDTFDG 465
Score = 33.1 bits (75), Expect = 0.14
Identities = 19/66 (28%), Positives = 24/66 (36%), Gaps = 13/66 (19%)
Query: 6 VVRSDTKVTAEVLQASNL-----QVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISAC 60
VV K T +++ N Q V AG + +D T VLN I
Sbjct: 1829 VVERVGKRTGWLVEIVNYNVENQQYVA-AGD-LRALD--TVTN----VLNFIKLQKIDII 1880
Query: 61 ELTCSL 66
EL SL
Sbjct: 1881 ELQKSL 1886
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343,
PSI-2, structure initiative; HET: MSE NAP; 2.79A
{Bacillus subtilis}
Length = 300
Score = 42.5 bits (100), Expect = 1e-04
Identities = 27/112 (24%), Positives = 45/112 (40%), Gaps = 15/112 (13%)
Query: 92 TGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLN------IASLG 145
T ++G +AVLGLGR G +A A G V S A++ +
Sbjct: 151 TDYTIHGSQVAVLGLGRTGMTIARTFAALGANVKVGA--RSSAHLARITEMGLVPFHTDE 208
Query: 146 LEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVA--RGGIVDE 195
L++ D ++T IP ++N VL ++++A GG +
Sbjct: 209 LKEHVKDIDIC-INT--IP--SMILNQTVLSSMTPKTLILDLASRPGGTDFK 255
>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: MSE; 1.62A {Jannaschia SP}
Length = 286
Score = 40.0 bits (93), Expect = 5e-04
Identities = 14/90 (15%), Positives = 35/90 (38%), Gaps = 4/90 (4%)
Query: 98 GKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPM-VSVEDAAKLNIASLGLEDIWPLADY 155
KT+A+LG G++G + ++ + + + + I + AD
Sbjct: 11 PKTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQGMGIPLTDGDGWIDEADV 70
Query: 156 ITVHTPLIPQTKNLINAEVLKKCKKGVRVV 185
+ + P K + +++ + + G V+
Sbjct: 71 VVLALPDNIIEK--VAEDIVPRVRPGTIVL 98
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION
transporter, symporter, transport protein; HET: NAI;
2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A*
2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Length = 144
Score = 36.9 bits (86), Expect = 0.003
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 99 KTLAVLGLGRIGREVALRMQAFGMKVIGFD 128
K AV+GLGR G + + G +V+ D
Sbjct: 7 KQFAVIGLGRFGGSIVKELHRMGHEVLAVD 36
>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative
deamination mechanism, oxidoreductase; HET: PHE NAD;
1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB:
1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*
Length = 355
Score = 37.5 bits (88), Expect = 0.004
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 95 ELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV-SVEDAAKLNIASLGLEDIW 150
L G T+ V GLG +G +A G +++ D V A L ++ LED+
Sbjct: 172 SLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAVALEDVL 228
>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus
sphaericus} SCOP: c.2.1.7 c.58.1.1
Length = 364
Score = 37.1 bits (87), Expect = 0.006
Identities = 9/41 (21%), Positives = 21/41 (51%)
Query: 88 RKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFD 128
++ + L G ++V GLG + + + ++ G K++ D
Sbjct: 163 KEAFGSDSLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTD 203
>3dtt_A NADP oxidoreductase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: NAP; 1.70A {Arthrobacter SP}
Length = 245
Score = 36.6 bits (84), Expect = 0.006
Identities = 39/226 (17%), Positives = 72/226 (31%), Gaps = 32/226 (14%)
Query: 98 GKTLAVLGLGRIGREVALRMQAFGMKVI--GFDPMVSVEDAAKLNIASLGLEDIWPLADY 155
G +AVLG G +GR +A + G +V DP ++ A + + P +
Sbjct: 19 GMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWLPEHPH 78
Query: 156 ITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENA------LLDSLKCGHCGG 209
+ + AE++ +G + + A + + L H
Sbjct: 79 VHLAAFA----DVAAGAELVVNATEGASSIAALTAAGAENLAGKILVDIANPLDFSHGMP 134
Query: 210 AALDVFCEEPPKSEQTFELIKHPKVIVT------PHLGASTKEAQIRVAVEIA------- 256
L+ EQ KV+ T + + A +V ++
Sbjct: 135 PTLNP-VNTDSLGEQIQRTFPEAKVVKTLNTMNASLMVDPGRAAGGDHSVFVSGNDAAAK 193
Query: 257 EQFIALANTNPQYTSIQGVLNAPALAASRNPENTS--WISLARSLG 300
+ L + Q V++ + +R E WI L +LG
Sbjct: 194 AEVATLLKS----LGHQDVIDLGDITTARGAEMLLPVWIRLWGALG 235
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural
genomics, pyrococcus PSI-2, protein structure
initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm
3638}
Length = 373
Score = 37.0 bits (85), Expect = 0.007
Identities = 21/122 (17%), Positives = 40/122 (32%), Gaps = 5/122 (4%)
Query: 141 IASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDEN-ALL 199
A L +DIW + D PL+ +N + GV++ + +
Sbjct: 50 SAVLASDDIWRIVDLSEEPLPLVVAILESLNELGYVTFEDGVKLTEKGEELVAEYGIGKR 109
Query: 200 DSLKCGHCGGAALDVFCEEPPKSEQTFELI--KHPKVIVTPHLGASTKEAQIRVAVEIAE 257
C HC G +D+ + + F I P+ + T E + + +
Sbjct: 110 YDFTCPHCQGKTVDL--QAFADLLEQFREIVKDRPEPLHEFDQAYVTPETTVARVILMHT 167
Query: 258 QF 259
+
Sbjct: 168 RG 169
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI,
M structural genomics; 1.70A {Archaeoglobus fulgidus}
Length = 141
Score = 35.3 bits (82), Expect = 0.007
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 102 AVLGLGRIGREVALRMQAFGMKVIGFD 128
V+G G + + A G KV+ D
Sbjct: 10 IVIGSEAAGVGLVRELTAAGKKVLAVD 36
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine,
nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A
{Methanothermobacter thermautotrophicusorganism_taxid}
PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Length = 298
Score = 36.7 bits (84), Expect = 0.008
Identities = 12/97 (12%), Positives = 35/97 (36%), Gaps = 9/97 (9%)
Query: 98 GKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDI-------- 149
G+ +G G + L +GM+V + + + ++ I LG++ +
Sbjct: 123 GERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDET 182
Query: 150 -WPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVV 185
++ + + + K + + + R++
Sbjct: 183 VIDGLEFDVLMVAALAEPKRRVFRNIHRYVDTETRII 219
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI,
MCSG, structural genomics, midwest center for structural
genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Length = 451
Score = 36.8 bits (86), Expect = 0.008
Identities = 25/102 (24%), Positives = 36/102 (35%), Gaps = 14/102 (13%)
Query: 94 TELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLG-------- 145
T K + VLGL R G A + G V D E+ ++ G
Sbjct: 5 TTFENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPFDENPTAQSLLEEGIKVVCGSH 64
Query: 146 -LEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVN 186
LE + Y+ + P IP N V K +K + V+
Sbjct: 65 PLELLDEDFCYM-IKNPGIPYN----NPMVKKALEKQIPVLT 101
>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers,
NAD binding DOMA amino acid insertional region,
hydrolase; HET: ADN NAD; 1.60A {Mycobacterium
tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*
Length = 494
Score = 36.3 bits (84), Expect = 0.013
Identities = 27/115 (23%), Positives = 48/115 (41%), Gaps = 13/115 (11%)
Query: 77 GC-QSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVI--GFDPMVSV 133
G SL +G T + GK + + G G +G+ A M+ G +V DP+ ++
Sbjct: 255 GTRHSLIDGI---NRGTDALIGGKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINAL 311
Query: 134 EDAAKLNIASLGLEDIWPLAD-YITVHTPLIPQTKNLINAEVLKKCKKGVRVVNV 187
+ A + +E+ AD +T K++I E +K K + N+
Sbjct: 312 Q-AMMEGFDVVTVEEAIGDADIVVTA-----TGNKDIIMLEHIKAMKDHAILGNI 360
>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography
structure, oxidoreductase; HET: OMT NAP; 1.55A
{Synechocystis SP} SCOP: a.100.1.12 c.2.1.6
Length = 279
Score = 35.2 bits (82), Expect = 0.018
Identities = 33/171 (19%), Positives = 59/171 (34%), Gaps = 31/171 (18%)
Query: 101 LAVLGLGRIGREVALRMQAFGMKVIGFDP-MVSVEDAAKLNIASLGLEDIWPL--ADYIT 157
+ V+GLG IG +A ++ G +IG + E A + + +D+ L A I
Sbjct: 3 IGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLLQTAKIIF 62
Query: 158 VHTPLIPQTKNLINAEVLKKCKKGVRVVNVA--RGGIVDE-NALLDSLKCGH--CGGAAL 212
+ TP I + +++ V +VA + I + + L GH G
Sbjct: 63 LCTP-IQLILPTL-EKLIPHLSPTAIVTDVASVKTAIAEPASQLWSGFIGGHPMAG---- 116
Query: 213 DVFCEEPPKSEQT------FELIKHPKVIVTPHLGASTKEAQIRVAVEIAE 257
+ L + ++TP T Q+ + E
Sbjct: 117 ---------TAAQGIDGAEENLFVNAPYVLTPT--EYTDPEQLACLRSVLE 156
>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.30A {Geobacter metallireducens}
Length = 358
Score = 35.4 bits (82), Expect = 0.018
Identities = 11/42 (26%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 101 LAVLGLGRIGREVALRMQAFGMKVIGFDPMVS-VEDAAKLNI 141
+ ++GLGR+G ++ R++ G + + +D V+ V+ + I
Sbjct: 25 IGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQALEREGI 66
>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F
structural genomics, JCSG, protein structure initiative;
2.60A {Corynebacterium glutamicum atcc 13032}
Length = 341
Score = 35.4 bits (82), Expect = 0.020
Identities = 13/70 (18%), Positives = 24/70 (34%), Gaps = 6/70 (8%)
Query: 99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDP-MVSVEDAAKLNI-----ASLGLEDIWPL 152
+ + +LGLG IG + + A V G++ + A L+
Sbjct: 9 RPVCILGLGLIGGSLLRDLHAANHSVFGYNRSRSGAKSAVDEGFDVSADLEATLQRAAAE 68
Query: 153 ADYITVHTPL 162
I + P+
Sbjct: 69 DALIVLAVPM 78
>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate
dehydrogenase (EC...; 1574749, chorismate mutase type
II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae}
SCOP: a.100.1.12 c.2.1.6
Length = 298
Score = 35.0 bits (81), Expect = 0.024
Identities = 19/102 (18%), Positives = 34/102 (33%), Gaps = 13/102 (12%)
Query: 87 DRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGL 146
T K + V G G++G A ++A G + D + +
Sbjct: 11 QFGFKTINSDIHKIVIVGGYGKLGGLFARYLRASGYPISILDR-----EDWAVA------ 59
Query: 147 EDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVA 188
E I AD + V P I T I + + + + ++
Sbjct: 60 ESILANADVVIVSVP-INLTLETI-ERLKPYLTENMLLADLT 99
>3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition,
oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} PDB:
3mvo_A* 3mvq_A* 3qmu_A* 3etd_A* 3ete_A* 3etg_A* 1l1f_A
1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A*
Length = 501
Score = 35.4 bits (82), Expect = 0.025
Identities = 12/46 (26%), Positives = 16/46 (34%)
Query: 81 LKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIG 126
+ E + L KT V G G +G + FG K I
Sbjct: 227 INEASYMSILGMTPGFGDKTFVVQGFGNVGLHSMRYLHRFGAKCIT 272
>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium
falciparum} SCOP: c.2.1.4 c.23.12.3
Length = 479
Score = 35.2 bits (81), Expect = 0.030
Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 13/115 (11%)
Query: 77 GC-QSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVI--GFDPMVSV 133
GC SL +G T + GK + + G G +G+ A M+ G +V DP+ ++
Sbjct: 238 GCRHSLPDGL---MRATDFLISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAI 294
Query: 134 EDAAKLNIASLGLEDIWPLAD-YITVHTPLIPQTKNLINAEVLKKCKKGVRVVNV 187
+ A + L++I D +IT ++I E L K K V N+
Sbjct: 295 Q-AVMEGFNVVTLDEIVDKGDFFITC-----TGNVDVIKLEHLLKMKNNAVVGNI 343
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide
transferase; purine ribonucleotide biosynthesis; HET:
ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Length = 433
Score = 34.6 bits (80), Expect = 0.044
Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 11/95 (11%)
Query: 98 GKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIAS----LGLEDIWPLA 153
+ + +LG G +G+E+A+ Q G++V+ D +A + +A + D L
Sbjct: 19 AQKILLLGSGELGKEIAIEAQRLGVEVVAVDR---YANAPAMQVAHRSYVGNMMDKDFLW 75
Query: 154 DYITVHTP--LIPQTKNLINAEVLKKC-KKGVRVV 185
+ P +IP+ + IN + L + K G VV
Sbjct: 76 SVVEREKPDAIIPEIEA-INLDALFEFEKDGYFVV 109
>2dpo_A L-gulonate 3-dehydrogenase; structural genomics, NPPSFA, national
project on protein structural and functional analyses;
1.70A {Oryctolagus cuniculus} PDB: 2ep9_A* 3ado_A 3a97_A
3adp_A* 3f3s_A*
Length = 319
Score = 34.2 bits (79), Expect = 0.051
Identities = 11/45 (24%), Positives = 19/45 (42%)
Query: 99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIAS 143
+ ++G G +GR A+ + G +V +D A NI
Sbjct: 7 GDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPRQITGALENIRK 51
>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase;
oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus}
Length = 421
Score = 34.0 bits (79), Expect = 0.052
Identities = 19/88 (21%), Positives = 33/88 (37%), Gaps = 10/88 (11%)
Query: 93 GTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLN---IASLGLEDI 149
G ++ +AV G G +G ++ G KV ++ D + N G+ D
Sbjct: 207 GIKMEDAKIAVQGFGNVGTFTVKNIERQGGKVCA----IAEWDRNEGNYALYNENGI-DF 261
Query: 150 WPLADYITVHTPLI--PQTKNLINAEVL 175
L Y + LI P + + + E
Sbjct: 262 KELLAYKEANKTLIGFPGAERITDEEFW 289
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi
DSS, structural genomics, PSI-2, protein structure
initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Length = 286
Score = 34.1 bits (78), Expect = 0.055
Identities = 13/68 (19%), Positives = 23/68 (33%), Gaps = 6/68 (8%)
Query: 99 KTLAVLGLGRIGREVALRMQAFGMKVIGF--DPMVSVEDAAKLNIASLGLEDIWPL---A 153
TL G G R ++ + G ++IG +P +E L P
Sbjct: 6 GTLLSFGHGYTARVLSRALAPQGWRIIGTSRNP-DQMEAIRASGAEPLLWPGEEPSLDGV 64
Query: 154 DYITVHTP 161
++ + T
Sbjct: 65 THLLISTA 72
>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics,
seattle structural G center for infectious disease; HET:
ADN NAD; 2.39A {Brucella melitensis biovar abortus}
Length = 464
Score = 34.3 bits (79), Expect = 0.057
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 13/115 (11%)
Query: 77 GC-QSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVI--GFDPMVSV 133
GC +SL +G + T + GK V G G +G+ A + G +V DP+ ++
Sbjct: 228 GCKESLVDGI---RRGTDVMMAGKVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDPICAL 284
Query: 134 EDAAKLNIASLGLEDIWPLAD-YITVHTPLIPQTKNLINAEVLKKCKKGVRVVNV 187
+ AA + L+D AD +T K++I + ++K K V N+
Sbjct: 285 Q-AAMDGFEVVTLDDAASTADIVVTT-----TGNKDVITIDHMRKMKDMCIVGNI 333
>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid,
S-adenosyl-L-homocysteine hydro NAD, one-carbon
metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei}
PDB: 3glq_A*
Length = 494
Score = 34.0 bits (78), Expect = 0.059
Identities = 28/115 (24%), Positives = 48/115 (41%), Gaps = 13/115 (11%)
Query: 77 GCQSLKEGKWDR-KLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVI--GFDPMVSV 133
GC +E D K T + GK V G G +G+ A ++ G V DP+ ++
Sbjct: 258 GC---RESLVDGIKRATDVMIAGKIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICAL 314
Query: 134 EDAAKLNIASLGLEDIWPLAD-YITVHTPLIPQTKNLINAEVLKKCKKGVRVVNV 187
+ AA + +E AD ++T ++IN + +K + V N+
Sbjct: 315 Q-AAMEGYRVVTMEYAADKADIFVTA-----TGNYHVINHDHMKAMRHNAIVCNI 363
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-;
ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP
MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1
d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A*
1ez1_A*
Length = 391
Score = 33.7 bits (78), Expect = 0.072
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 98 GKTLAVLGLGRIGREVALRMQAFGMKVIGFDP 129
+ +LG G +G+EVA+ Q G++VI D
Sbjct: 11 ATRVMLLGSGELGKEVAIECQRLGVEVIAVDR 42
>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A
{Thermus thermophilus}
Length = 419
Score = 33.2 bits (77), Expect = 0.096
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 93 GTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGF-DPMVSVEDAAKLNIASL 144
G +L G + V GLG++G VAL + GM+V+ M + L++A +
Sbjct: 213 GLDLRGARVVVQGLGQVGAAVALHAERLGMRVVAVATSMGGMYAPEGLDVAEV 265
>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG,
oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A
Length = 424
Score = 32.9 bits (76), Expect = 0.12
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 93 GTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGF-DPMVSVEDAAKLNIASL 144
G +L + + G G G +A M G KVIG D + + L+I L
Sbjct: 216 GIKLQNARIIIQGFGNAGSFLAKFMHDAGAKVIGISDANGGLYNPDGLDIPYL 268
>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A
{Thermus thermophilus HB27} PDB: 3aoe_A
Length = 440
Score = 32.9 bits (76), Expect = 0.13
Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 93 GTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGF-DPMVSVEDAAKLNIASL 144
G ++ G +A+ G G +G A G +V+ D +V + A ++ L
Sbjct: 230 GLQVEGARVAIQGFGNVGNAAARAFHDHGARVVAVQDHTGTVYNEAGIDPYDL 282
>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi
conformation, oxidoreductase; HET: NAD PDC; 2.50A
{Staphylococcus aureus} PDB: 3ojl_A*
Length = 431
Score = 32.6 bits (75), Expect = 0.15
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 99 KTLAVLGLGRIGREVALRMQAFGMKVIGFD 128
L V+GLG IG ++ G+ V+G D
Sbjct: 12 SKLTVVGLGYIGLPTSIMFAKHGVDVLGVD 41
>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics,
SGC stockholm, S genomics consortium, SGC, hydrolase,
NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB:
3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A*
1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*
Length = 436
Score = 32.6 bits (75), Expect = 0.16
Identities = 22/107 (20%), Positives = 39/107 (36%), Gaps = 37/107 (34%)
Query: 98 GKTLAVLGLGRIGREVALRMQAFGMKVI---------------GFDPMVSVEDAAKLNIA 142
GKT V G G +G+ A ++ FG +V+ G+ + VED +
Sbjct: 211 GKTACVCGYGDVGKGCAAALRGFGARVVVTEVDPINALQAAMEGYQVL-LVEDVVEEA-- 267
Query: 143 SLGLEDIWPLADYITVHTPLIPQT--KNLINAEVLKKCKKGVRVVNV 187
I ++T T ++I +E + + V N+
Sbjct: 268 -----HI-----FVTT-------TGNDDIITSEHFPRMRDDAIVCNI 297
>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET:
NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7
c.58.1.1
Length = 421
Score = 32.5 bits (75), Expect = 0.19
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 93 GTELYGKTLAVLGLGRIGREVALRMQAFGMKVIG 126
+ GKT+A+ G+G +GR A ++ G KVI
Sbjct: 205 WGGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIA 238
>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase,
NAD, one-carbon metabolism, phosphoprotein; HET: NAD;
2.25A {Homo sapiens} PDB: 3mtg_A*
Length = 435
Score = 32.6 bits (75), Expect = 0.19
Identities = 23/107 (21%), Positives = 36/107 (33%), Gaps = 37/107 (34%)
Query: 98 GKTLAVLGLGRIGREVALRMQAFGMKVI---------------GFDPMVSVEDAAKLNIA 142
GK + V G G +G+ ++A G V GF + + + +
Sbjct: 220 GKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPICALQACMDGFRLV-KLNEVIRQV-- 276
Query: 143 SLGLEDIWPLADYITVHTPLIPQT--KNLINAEVLKKCKKGVRVVNV 187
DI IT T KN++ E L + K V N+
Sbjct: 277 -----DI-----VITC-------TGNKNVVTREHLDRMKNSCIVCNM 306
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics,
tubercidin, structu genomics, structural genomics
consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB:
4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A*
3qow_A* 3qox_A* 4er3_A* 3sr4_A*
Length = 438
Score = 32.1 bits (72), Expect = 0.27
Identities = 13/105 (12%), Positives = 24/105 (22%), Gaps = 26/105 (24%)
Query: 105 GLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASL-------------------- 144
G+G++ +VA G + A+
Sbjct: 183 GVGQVVLQVAAATNCK--HHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGD 240
Query: 145 ----GLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVV 185
+ I V+ + E K+G R+V
Sbjct: 241 FLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIV 285
>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone
methyltransferase, nucleosome; HET: SAH; 2.20A
{Saccharomyces cerevisiae} SCOP: c.66.1.31
Length = 433
Score = 31.8 bits (71), Expect = 0.31
Identities = 13/75 (17%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
Query: 111 REVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLI 170
E+ R + +GM++ + + + + + ++ P D I V+ L + N
Sbjct: 287 EELKKRCKLYGMRLNNVEFSLKKSF-----VDNNRVAELIPQCDVILVNNFLFDEDLNKK 341
Query: 171 NAEVLKKCKKGVRVV 185
++L+ K G +++
Sbjct: 342 VEKILQTAKVGCKII 356
>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown
function, PSI-2, protein structure initiative; 1.44A
{Methylobacillus flagellatus KT}
Length = 286
Score = 31.6 bits (72), Expect = 0.32
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 99 KTLAVLGLGRIGREVALRMQAFGMKVIG 126
+ + G G +G E+A R+ A G +V G
Sbjct: 4 SKILIAGCGDLGLELARRLTAQGHEVTG 31
>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain
dehydrogenase/reductase, 4-pyridoxola NAD+,
oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti}
PDB: 3ndr_A* 3nug_A*
Length = 247
Score = 31.3 bits (72), Expect = 0.34
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 96 LYGKTLAVLGLGR-IGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLG 145
L GKT V G + IG+ +A R+ A G VI D ++ E A AS+G
Sbjct: 4 LAGKTALVTGAAQGIGKAIAARLAADGATVIVSD--INAEGAKAA-AASIG 51
>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine
reductase fold (domain II), alpha/beta protein; 1.70A
{Saccharomyces cerevisiae}
Length = 467
Score = 31.3 bits (70), Expect = 0.40
Identities = 29/195 (14%), Positives = 57/195 (29%), Gaps = 23/195 (11%)
Query: 98 GKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYIT 157
GK + +LG G + + V + A + + +A L + LA
Sbjct: 23 GKNVLLLGSGFVAQPVIDTLAAND----------DIN----VTVACRTLANAQALAKPSG 68
Query: 158 VHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCE 217
+ ++ + L K VV N + +++ +
Sbjct: 69 SKAISL----DVTDDSALDKVLADNDVVISLIPYTFHPNVVKSAIRTKTDVVTS----SY 120
Query: 218 EPPKSEQTFELIKHPKVIVTPHLGASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLN 277
P + I + V +G + AV+ ++ + S G L
Sbjct: 121 ISPALRELEPEIVKAGITVMNEIGLDPGIDHL-YAVKTIDEVHRAGGKLKSFLSYCGGLP 179
Query: 278 APALAASRNPENTSW 292
AP + + SW
Sbjct: 180 APEDSDNPLGYKFSW 194
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB;
TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus
rimd 2210633}
Length = 183
Score = 30.5 bits (69), Expect = 0.46
Identities = 9/27 (33%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 103 VLGLGRIGREVALRMQA-FGMKVIGFD 128
+LG+GRIG ++A +G +G +
Sbjct: 44 ILGMGRIGTGAYDELRARYGKISLGIE 70
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell
cycle, cell division, cell shape, cell WAL
biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia
coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A*
2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A*
2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*
Length = 439
Score = 31.0 bits (71), Expect = 0.57
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 95 ELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFD 128
+ GK + ++GLG G A G+ D
Sbjct: 2 DYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMD 35
>1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A
{Clostridium symbiosum} SCOP: c.2.1.7 c.58.1.1 PDB:
1hrd_A 1k89_A 1aup_A 2yfh_A
Length = 449
Score = 30.6 bits (70), Expect = 0.75
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 93 GTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGF 127
L GKT+A+ G G + A ++ G K +
Sbjct: 225 NDTLVGKTVALAGFGNVAWGAAKKLAELGAKAVTL 259
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG,
short-chain alcohol reductase, fatty acid biosynthesis,
apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2
Length = 285
Score = 30.2 bits (69), Expect = 0.82
Identities = 16/55 (29%), Positives = 21/55 (38%), Gaps = 5/55 (9%)
Query: 96 LYGKTLAVLGLGR-IGREVALRMQAFGMKVIGFDPMVSVEDAAKL--NIASLGLE 147
K V G GR IGRE+A + VI + + + I S G E
Sbjct: 42 GENKVALVTGAGRGIGREIAKMLAKSVSHVICIS--RTQKSCDSVVDEIKSFGYE 94
>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin,
rossman fold, chorismate metabolism, short-CHA
oxidoreductase, tetramer; 2.00A {Escherichia coli}
Length = 250
Score = 29.8 bits (68), Expect = 0.96
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 95 ELYGKTLAVLGLGR-IGREVALRMQAFGMKVIGFD 128
+ GK + V G G+ IG AL G KV GFD
Sbjct: 4 DFSGKNVWVTGAGKGIGYATALAFVEAGAKVTGFD 38
>3r3j_A Glutamate dehydrogenase; rossman fold, oxidoreductase, apicoplast;
3.10A {Plasmodium falciparum}
Length = 456
Score = 30.3 bits (69), Expect = 1.0
Identities = 7/35 (20%), Positives = 13/35 (37%)
Query: 93 GTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGF 127
L K V G G + + + ++ G V+
Sbjct: 234 NDNLENKKCLVSGSGNVAQYLVEKLIEKGAIVLTM 268
>3m2o_A Glyoxalase/bleomycin resistance protein; unknown function,
structural genomics, putative glyoxylase/B resistance
protein; HET: PG4; 1.35A {Rhodopseudomonas palustris}
PDB: 3vcx_A*
Length = 164
Score = 29.1 bits (65), Expect = 1.3
Identities = 12/64 (18%), Positives = 23/64 (35%), Gaps = 14/64 (21%)
Query: 110 GREVALRMQAFGMKVIGFDPMVSVEDAAKLNIAS-------LGLEDIWPLADYITVHTPL 162
GRE + GM+ + P++ D A A+ G ++ Y+ + +
Sbjct: 13 GRE---NLYFQGMRSTSYYPVIMTSDVA----ATAAFYCQHFGFRPLFEADWYVHLQSAE 65
Query: 163 IPQT 166
P
Sbjct: 66 DPAV 69
>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase;
reductase,hyperthermophIle, structural genomics, PSI,
protei structure initiative; 2.30A {Thermus
thermophilus} SCOP: c.2.1.2
Length = 263
Score = 29.4 bits (67), Expect = 1.3
Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 4/53 (7%)
Query: 96 LYGKTLAVLGLGR-IGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLE 147
L GKT+ V G IGR G ++ D A+ +A+L E
Sbjct: 4 LSGKTILVTGAASGIGRAALDLFAREGASLVAVD--REERLLAEA-VAALEAE 53
>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain
dehydrogenase/reductase, steroid metabolism, LIP
metabolism, structural genomics; HET: NAD; 2.00A {Homo
sapiens}
Length = 264
Score = 29.4 bits (67), Expect = 1.4
Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 5/66 (7%)
Query: 96 LYGKTLAVLGLGR-IGREVALRMQAFGMKVIGFDPMVSVEDAAKL--NIASLGLEDIWPL 152
L V G G IGR V++R+ G V D + A + + G ++ P
Sbjct: 5 LRSALALVTGAGSGIGRAVSVRLAGEGATVAACD--LDRAAAQETVRLLGGPGSKEGPPR 62
Query: 153 ADYITV 158
++
Sbjct: 63 GNHAAF 68
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET:
NDP; 2.40A {Streptomyces griseoruber}
Length = 279
Score = 29.5 bits (67), Expect = 1.5
Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 5/59 (8%)
Query: 92 TGTELYGKTLAVLGLGR-IGREVALRMQAFGMKVIGFDPMVSVEDAAKL--NIASLGLE 147
+T V G+ IG VA + A G+ V G ++ + + + G +
Sbjct: 18 GSHMSRPQTAFVTGVSSGIGLAVARTLAARGIAVYGCA--RDAKNVSAAVDGLRAAGHD 74
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 1.7
Identities = 9/29 (31%), Positives = 12/29 (41%), Gaps = 10/29 (34%)
Query: 79 QSLKEGKWDRKLYTGTELY----GKTLAV 103
Q+LK KL +LY LA+
Sbjct: 20 QALK------KLQASLKLYADDSAPALAI 42
>2yfg_A NADP-specific glutamate dehydrogenase; oxidoreductase; 2.50A
{Escherichia coli} PDB: 3sbo_A 2yfg_E
Length = 447
Score = 29.2 bits (66), Expect = 1.9
Identities = 9/37 (24%), Positives = 15/37 (40%)
Query: 91 YTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGF 127
G G ++V G G + + + FG +VI
Sbjct: 225 RHGMGFEGMRVSVSGSGNVAQYAIEKAMEFGARVITA 261
>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP
oxidoreductase coenzyme F420-dependent, structural
genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum
WCFS1}
Length = 209
Score = 28.7 bits (63), Expect = 2.0
Identities = 25/205 (12%), Positives = 52/205 (25%), Gaps = 31/205 (15%)
Query: 100 TLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVH 159
+ + G G +G+ + + G +V + ++ I ++ P +
Sbjct: 21 EITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQATTLGEIVIMAV------PYPALAAL- 73
Query: 160 TPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEP 219
A+ KG VV++ D L +
Sbjct: 74 ------------AKQYATQLKGKIVVDITNPLNFDTWDDLVVPADSSAAQELQQQLPDSQ 121
Query: 220 PKSEQTFELIKHPKVIVTPHLGASTKEAQIRVAVEIAEQFIALANTNPQYTSIQG--VLN 277
L + + V +A + + + V +
Sbjct: 122 VLKAFNT--------TFAATLQSGQVNGKEPTTVLVAGNDDSAKQRFTRALADSPLEVKD 173
Query: 278 APALAASRNPENTS--WISLARSLG 300
A L +R E ++LA S
Sbjct: 174 AGKLKRARELEAMGFMQMTLAASEQ 198
>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate
pathway, dehydrogenase, oxidoreductase; 2.00A
{Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A*
1e5q_A
Length = 450
Score = 29.1 bits (64), Expect = 2.0
Identities = 20/145 (13%), Positives = 44/145 (30%), Gaps = 22/145 (15%)
Query: 99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITV 158
K++ +LG G + R + G+KV +A LE L+ +
Sbjct: 4 KSVLMLGSGFVTRPTLDVLTDSGIKVT---------------VACRTLESAKKLSAGVQH 48
Query: 159 HTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEE 218
TP+ + ++ + L +V + +++ +
Sbjct: 49 STPI---SLDVNDDAALDAEVAKHDLVISLIPYTFHATVIKSAIRQKKH----VVTTSYV 101
Query: 219 PPKSEQTFELIKHPKVIVTPHLGAS 243
P + + K + V +G
Sbjct: 102 SPAMMELDQAAKDAGITVMNEIGLD 126
>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A
{Archaeoglobus fulgidus}
Length = 236
Score = 28.9 bits (64), Expect = 2.0
Identities = 6/25 (24%), Positives = 14/25 (56%)
Query: 102 AVLGLGRIGREVALRMQAFGMKVIG 126
++G G IG+ +A ++ G ++
Sbjct: 4 GLIGYGAIGKFLAEWLERNGFEIAA 28
>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain,
protein NADP complex, structural genomics, PSI; HET:
NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP:
a.100.1.8 c.2.1.6
Length = 264
Score = 28.8 bits (64), Expect = 2.1
Identities = 7/38 (18%), Positives = 19/38 (50%)
Query: 101 LAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAK 138
+ +G G + + +A R+++ G++V+ S +
Sbjct: 3 VGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIER 40
>2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis,
oligomer organization, oxidoreductase; 2.7A {Plasmodium
falciparum}
Length = 470
Score = 29.2 bits (66), Expect = 2.2
Identities = 19/120 (15%), Positives = 34/120 (28%), Gaps = 25/120 (20%)
Query: 91 YTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGF-DPMVSVEDAAKLNIASLGL--- 146
+ +T V G G + ++ +KV+ D V + +L
Sbjct: 245 SLNIPVEKQTAVVSGSGNVALYCVQKLLHLNVKVLTLSDSNGYVYEPNGFTHENLEFLID 304
Query: 147 ------------EDIWPLADYITVHTP-------LIP-QTKNLINAEVLKK-CKKGVRVV 185
+ A Y P P T+N ++ + K K G +V
Sbjct: 305 LKEEKKGRIKEYLNHSSTAKYFPNEKPWGVPCTLAFPCATQNDVDLDQAKLLQKNGCILV 364
>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase,
combinatorial biosynthesis, short chain
dehydrogenase/reductase; HET: NAP EMO; 2.10A
{Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A*
1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A*
1xr3_A*
Length = 277
Score = 28.7 bits (65), Expect = 2.3
Identities = 12/57 (21%), Positives = 19/57 (33%), Gaps = 5/57 (8%)
Query: 94 TELYGKTLAVLGLGR-IGREVALRMQAFGMKVIGFDPMVSVEDAAKL--NIASLGLE 147
+ V G IG E+A R+ G++V E + G+E
Sbjct: 18 ATQDSEVALVTGATSGIGLEIARRLGKEGLRVFVCA--RGEEGLRTTLKELREAGVE 72
>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP}
SCOP: c.2.1.2 PDB: 2ewm_A*
Length = 249
Score = 28.6 bits (65), Expect = 2.3
Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 3/53 (5%)
Query: 96 LYGKTLAVLGLGR-IGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLE 147
L K + G IGR +A R G + D + A+ I +LG
Sbjct: 5 LKDKLAVITGGANGIGRAIAERFAVEGADIAIAD--LVPAPEAEAAIRNLGRR 55
>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural
genomics, riken structural genomics/proteomics
initiative, RSGI; 2.40A {Thermus thermophilus} SCOP:
c.2.1.2
Length = 245
Score = 28.6 bits (65), Expect = 2.4
Identities = 8/45 (17%), Positives = 15/45 (33%), Gaps = 3/45 (6%)
Query: 96 LYGKTLAVLGLGR-IGREVALRMQAFGMKVIGFDPMVSVEDAAKL 139
L K + + G IGR G +++ D + +
Sbjct: 3 LKDKAVLITGAAHGIGRATLELFAKEGARLVACD--IEEGPLREA 45
>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein;
structural genomics, ssgcid; 1.70A {Mycobacterium
smegmatis} PDB: 3lls_A 3q6i_A* 3m1l_A
Length = 454
Score = 28.8 bits (65), Expect = 2.4
Identities = 25/112 (22%), Positives = 35/112 (31%), Gaps = 14/112 (12%)
Query: 41 ATRKGVLVLNAPGGNFISACELTCSLISALSRNV------PQGCQSLKEGKWDRKLYTGT 94
AT V + ++SA S V S WD+ L
Sbjct: 156 ATVSLVYLSADAKPGATGLESTMRFILSAKSAYVDGQVFRVGAADSTPPADWDKPLD--- 212
Query: 95 ELYGKTLAVLGLGR-IGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLG 145
GK V G R IG +A G V+ D + ED ++ +G
Sbjct: 213 ---GKVAVVTGAARGIGATIAEVFARDGATVVAIDVDGAAEDLKRV-ADKVG 260
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid,
3-ketoacyl-(acyl-carrier- protein) reductase,
oxidoreductase, structural genomics; 2.05A {Burkholderia
pseudomallei}
Length = 270
Score = 28.7 bits (65), Expect = 2.5
Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 5/55 (9%)
Query: 96 LYGKTLAVLGLGR-IGREVALRMQAFGMKVIGFDPMVSVEDAAKL--NIASLGLE 147
L + V G R IGR +AL + G VIG + A + GLE
Sbjct: 26 LDKQVAIVTGASRGIGRAIALELARRGAMVIGTA--TTEAGAEGIGAAFKQAGLE 78
>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant,
oxidoreductase; 2.90A {Thermotoga maritima} SCOP:
c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A
Length = 415
Score = 29.0 bits (66), Expect = 2.5
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 93 GTELYGKTLAVLGLGRIGREVA-LRMQAFGMKVIGF-DPMVSVEDAAKLNIASL 144
G + T+AV G G +G+ A L Q G KV+ D + + ++ L
Sbjct: 204 GIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEEL 257
>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural
genomics, protein structure initiative; 2.40A
{Methanosarcina mazei GO1}
Length = 478
Score = 28.8 bits (65), Expect = 2.7
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 99 KTLAVLGLGRIGREVALRMQAFGM--KVIGFD 128
K + VLG+G +G A+ KV+GF
Sbjct: 19 KKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQ 50
>3e3i_A Carbonic anhydrase 2, beta carbonic anhydrase; allosteric site
mutant, lyase, META; 2.00A {Haemophilus influenzae} PDB:
3e3g_A 2a8d_A 2a8c_A 3e3f_A 3e31_A 3e2x_A 3e2a_A 3e28_A
3e2w_A 3e1w_A 3e1v_A 3e24_A 3mf3_A
Length = 229
Score = 28.6 bits (64), Expect = 2.7
Identities = 14/74 (18%), Positives = 27/74 (36%), Gaps = 8/74 (10%)
Query: 204 CGH--CGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIRVAVE--IAEQF 259
CGH CGG + ++ I+ LG + E + + + +AEQ
Sbjct: 96 CGHTNCGGIHAAMADKDLGLINNWLLHIRDIWFKHGHLLGKLSPEKRADMLTKINVAEQV 155
Query: 260 IALANTNPQYTSIQ 273
L + + ++
Sbjct: 156 YNLG----RTSIVK 165
>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S
genomics consortium, SGC, oxidoreductase; HET: NAD UPG;
2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A*
3tdk_A* 3ptz_A* 3prj_A* 3tf5_A
Length = 467
Score = 28.7 bits (65), Expect = 2.9
Identities = 13/79 (16%), Positives = 32/79 (40%), Gaps = 13/79 (16%)
Query: 93 GTELYGKTLAVLGL------GRIGRE-----VALRMQAFGMKVIGFDPMVSVEDAAKLNI 141
+ K +A+LG G RE ++ + G + +DP V + +++
Sbjct: 324 FNTVTDKKIAILGFAFKKDTGDT-RESSSIYISKYLMDEGAHLHIYDPKVP-REQIVVDL 381
Query: 142 ASLGLEDIWPLADYITVHT 160
+ G+ + ++ +T+
Sbjct: 382 SHPGVSEDDQVSRLVTISK 400
>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE
NAP; 1.60A {Vibrio cholerae o1 biovar el tor} PDB:
3rsh_A* 3rro_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A*
1i01_A* 1q7c_A* 2cf2_E
Length = 248
Score = 28.2 bits (64), Expect = 3.0
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Query: 95 ELYGKTLAVLGLGR-IGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLG 145
L GK V G R IG+ +A + G KVIG + E A+ LG
Sbjct: 6 NLEGKVALVTGASRGIGKAIAELLAERGAKVIGTA---TSESGAQAISDYLG 54
>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain;
structural genomics, center for structural genomics of
infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium
difficile}
Length = 308
Score = 28.4 bits (64), Expect = 3.0
Identities = 16/90 (17%), Positives = 35/90 (38%), Gaps = 13/90 (14%)
Query: 102 AVLGLGRIGREVALR--MQAFGMKVIGF---DPMVSVEDAAKLNIASLG-LEDIWPLADY 155
++GLG I ++ L ++ + +G + + + + I +E + D
Sbjct: 10 GMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICSDYRIMPFDSIESLAKKCDC 69
Query: 156 ITVHTPLIPQTKNLINAEVLKKC-KKGVRV 184
I +H+ + E++K GV V
Sbjct: 70 IFLHSS------TETHYEIIKILLNLGVHV 93
>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot,
C-terminal alpha-helical domain oxidoreductase; 2.00A
{Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6
Length = 338
Score = 28.4 bits (64), Expect = 3.1
Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 17/59 (28%)
Query: 96 LYGKTLAVLGLGRIGREVALRMQAFGMKVI----------------GFDPMVSVEDAAK 138
+ GK +A++G G G A ++ G+ V G V+ A
Sbjct: 14 IQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVA-DVKTAVA 71
>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: NAD; 2.10A {Mycobacterium
abscessus}
Length = 281
Score = 28.3 bits (64), Expect = 3.2
Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 11/53 (20%)
Query: 96 LYGKTLAVLGLGR-IGREVALRMQAFGMKVIGFD----------PMVSVEDAA 137
GKT + G R +GR A+ + G + D P+ + +D A
Sbjct: 8 FEGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLA 60
>3qy1_A Carbonic anhydrase; structural genomics, center for structural
genomics of infec diseases, csgid, lyase; 1.54A
{Salmonella enterica subsp} PDB: 1i6p_A 1i6o_A 1t75_A
2esf_A
Length = 223
Score = 28.2 bits (63), Expect = 3.3
Identities = 18/74 (24%), Positives = 26/74 (35%), Gaps = 8/74 (10%)
Query: 204 CGH--CGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIRVAVE--IAEQF 259
CGH CGG V E I+ + + LG +E ++ E + EQ
Sbjct: 99 CGHSGCGGIKAAVENPELGLINNWLLHIRDIWLKHSSLLGKMPEEQRLDALYELNVMEQV 158
Query: 260 IALANTNPQYTSIQ 273
L T +Q
Sbjct: 159 YNLG----HSTIMQ 168
>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid,
structural genomics; 1.95A {Mycobacterium
thermoresistibile}
Length = 317
Score = 28.4 bits (64), Expect = 3.3
Identities = 13/53 (24%), Positives = 19/53 (35%), Gaps = 11/53 (20%)
Query: 96 LYGKTLAVLGLGR-IGREVALRMQAFGMKVIGFD----------PMVSVEDAA 137
L GK + G R GR A+R+ G ++ D S E+
Sbjct: 44 LQGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELK 96
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein]
reductase; structural genomics; 2.25A {Mycobacterium
avium subsp}
Length = 253
Score = 28.3 bits (64), Expect = 3.4
Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 5/55 (9%)
Query: 96 LYGKTLAVLGLGR-IGREVALRMQAFGMKVIGFDPMVSVEDAAKL--NIASLGLE 147
K V G G IG+ A + G V+ D ++ E A + I + G
Sbjct: 7 FENKVGIVTGSGGGIGQAYAEALAREGAAVVVAD--INAEAAEAVAKQIVADGGT 59
>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid,
structural genomics, seattle structural genomics CEN
infectious disease; HET: NAD PG4; 1.55A {Mycobacterium
avium} PDB: 3uwr_A*
Length = 286
Score = 28.3 bits (64), Expect = 3.8
Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 1/54 (1%)
Query: 96 LYGKTLAVLGLGR-IGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLED 148
+ GK V G R GR A+R+ G +I D + +
Sbjct: 9 VEGKVAFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPE 62
>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein
structure initiative, NEW YORK structural genomix
research consortium; 1.69A {Xanthomonas campestris PV}
Length = 274
Score = 28.0 bits (63), Expect = 4.0
Identities = 17/45 (37%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 96 LYGKTLAVLGLGR-IGREVALRMQAFGMKVIGFDPMVSVEDAAKL 139
L GKTL + G R IG +ALR G V S KL
Sbjct: 4 LSGKTLFITGASRGIGLAIALRAARDGANVAIAA--KSAVANPKL 46
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics
center for infectious disease, ssgcid, oxidoreductase,
structural genomics; 2.20A {Brucella melitensis}
Length = 256
Score = 27.9 bits (63), Expect = 4.0
Identities = 14/55 (25%), Positives = 19/55 (34%), Gaps = 5/55 (9%)
Query: 96 LYGKTLAVLGLGR-IGREVALRMQAFGMKVIGFDPMVSVEDAAKL--NIASLGLE 147
L V G IGR +A G V+ D + E A + I G +
Sbjct: 10 LNDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTD--LKSEGAEAVAAAIRQAGGK 62
>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid,
3-ketoacyl-(acyl-carrier-protein) reductase, mycobac
paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium
subsp}
Length = 278
Score = 27.9 bits (63), Expect = 4.0
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 11/53 (20%)
Query: 96 LYGKTLAVLGLGR-IGREVALRMQAFGMKVIGFD----------PMVSVEDAA 137
L GK + G R GR A+R+ A G +I D P+ + E+ A
Sbjct: 11 LTGKVAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELA 63
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; 1.87A
{Rhodopseudomonas palustris}
Length = 252
Score = 28.0 bits (63), Expect = 4.1
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 96 LYGKTLAVLGLGR-IGREVALRMQAFGMKVI 125
T+AV+G G IG E+A + A G V
Sbjct: 5 PRNATVAVIGAGDYIGAEIAKKFAAEGFTVF 35
>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain
dehydrogenase, ketone BODY, beta hydroxybutyrate,
oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi}
SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A*
2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*
Length = 260
Score = 28.0 bits (63), Expect = 4.1
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Query: 96 LYGKTLAVLGLGR-IGREVALRMQAFGMKVI--GFDPMVSVEDAAKLNIASLGLEDIWPL 152
L GK V G IG +A + A G ++ GF +E A G++ ++
Sbjct: 2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDG 61
Query: 153 AD 154
AD
Sbjct: 62 AD 63
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase;
1.65A {Salmonella typhimurium}
Length = 211
Score = 27.9 bits (62), Expect = 4.1
Identities = 17/100 (17%), Positives = 31/100 (31%), Gaps = 6/100 (6%)
Query: 153 ADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCG----HCG 208
ADY+TV T K+ K V V + + LL+ H G
Sbjct: 78 ADYVTVLGVTDVLTIQSC-IRAAKEAGKQVVVDMICVDDLPARVRLLEEAGADMLAVHTG 136
Query: 209 GAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGAST-KEA 247
+ ++ + ++ V + + T K+
Sbjct: 137 TDQQAAGRKPIDDLITMLKVRRKARIAVAGGISSQTVKDY 176
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium
channel, BK channel, rossmann fold, membrane protein;
2.40A {Escherichia coli} SCOP: c.2.1.9
Length = 153
Score = 27.4 bits (61), Expect = 4.2
Identities = 5/23 (21%), Positives = 8/23 (34%)
Query: 103 VLGLGRIGREVALRMQAFGMKVI 125
V G + L++ G V
Sbjct: 8 VCGHSILAINTILQLNQRGQNVT 30
>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
NAD; 1.95A {Mycobacterium avium}
Length = 299
Score = 28.0 bits (63), Expect = 4.3
Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 11/53 (20%)
Query: 96 LYGKTLAVLGLGR-IGREVALRMQAFGMKVIGFD----------PMVSVEDAA 137
+ GK + G R GR A+ + G +I D PM + +D A
Sbjct: 26 VEGKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLA 78
>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural
genomics, NYSGXRC, PSI, protein structure initiative;
2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5
Length = 319
Score = 28.1 bits (63), Expect = 4.6
Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 6/66 (9%)
Query: 102 AVLGLGRIGREVALRM--QAFGMKVIGF---DPMVSVEDAAKLNIASLG-LEDIWPLADY 155
V+GLG I ++ L + A + G ++ I L + D
Sbjct: 9 GVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAASCDA 68
Query: 156 ITVHTP 161
+ VH+
Sbjct: 69 VFVHSS 74
>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain
oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE
MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*
Length = 248
Score = 27.8 bits (63), Expect = 4.6
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Query: 95 ELYGKTLAVLGLGR-IGREVALRMQAFGMKVIGFDPMVSVEDAAKL 139
+L GK V G R IGR +A ++ + G VI S E A +
Sbjct: 4 KLQGKVSLVTGSTRGIGRAIAEKLASAGSTVIITG--TSGERAKAV 47
>3rih_A Short chain dehydrogenase or reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: PG5; 2.15A {Mycobacterium
abscessus}
Length = 293
Score = 28.0 bits (63), Expect = 4.8
Identities = 10/46 (21%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 95 ELYGKTLAVLGLGR-IGREVALRMQAFGMKVIGFDPMVSVEDAAKL 139
+L +++ V G + IGR +A G V S + + +
Sbjct: 38 DLSARSVLVTGGTKGIGRGIATVFARAGANVAVAA--RSPRELSSV 81
>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol
metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP:
c.2.1.2
Length = 265
Score = 27.9 bits (63), Expect = 4.8
Identities = 13/44 (29%), Positives = 16/44 (36%), Gaps = 3/44 (6%)
Query: 96 LYGKTLAVLGLGR-IGREVALRMQAFGMKVIGFDPMVSVEDAAK 138
KT+ V G R IG + A G V S DA +
Sbjct: 12 FVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIY--RSAADAVE 53
>3ic5_A Putative saccharopine dehydrogenase; structural genomics,
APC63807.2, N-terminal domain, saccharo dehydrogenase,
PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Length = 118
Score = 26.7 bits (59), Expect = 5.1
Identities = 16/91 (17%), Positives = 37/91 (40%), Gaps = 5/91 (5%)
Query: 102 AVLGLGRIGREVALRMQAFG-MKVIGFDPMVS-VEDAAKLNIASLGL--EDIWPLADYIT 157
V+G G+IG+ +A ++ V D ++ + ++ +A+ + +D LA +
Sbjct: 9 CVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVLNRMGVATKQVDAKDEAGLAKALG 68
Query: 158 VHTPLIPQTKNLINAEVLKKCKK-GVRVVNV 187
+I + + K K G ++
Sbjct: 69 GFDAVISAAPFFLTPIIAKAAKAAGAHYFDL 99
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural
genomics, PSI, protein structure initiative; HET: COA;
1.70A {Pyrococcus furiosus} SCOP: c.2.1.8
Length = 138
Score = 26.8 bits (60), Expect = 5.2
Identities = 5/31 (16%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
Query: 99 KTLAVLGL----GRIGREVALRMQAFGMKVI 125
+ +A++G + G + + + G +V+
Sbjct: 15 RKIALVGASKNPAKYGNIILKDLLSKGFEVL 45
>3ovk_A Aminopeptidase P, XAA-Pro dipeptidase; structural genomics, PSI-2,
protein structure initiative, MI center for structural
genomics, MCSG; 2.00A {Streptococcus pyogenes}
Length = 132
Score = 26.9 bits (60), Expect = 5.3
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 112 EVALRMQAFGMKVIGFDPMVSVEDAAKL 139
VA ++A + +GF+ VS +
Sbjct: 85 VVAELLEADQIDCLGFEDQVSFSFYQAM 112
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein,
NAD(P)-binding rossmann fold, csgid, oxidoreductase;
1.95A {Francisella tularensis subsp}
Length = 247
Score = 27.5 bits (62), Expect = 5.4
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
Query: 96 LYGKTLAVLGLGR-IGREVALRMQAFGMKVIGFDPMVSVEDAAKL--NIASLGLE 147
L K V G R IG EVA + + G V+G S A K ++ G +
Sbjct: 3 LNEKVALVTGASRGIGFEVAHALASKGATVVGTA--TSQASAEKFENSMKEKGFK 55
>3c3w_A Two component transcriptional regulatory protein; response
regulator, two-component regulatory system, DNA-BIN
protein; 2.20A {Mycobacterium tuberculosis}
Length = 225
Score = 27.5 bits (62), Expect = 5.4
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 23 LQVVGRAGTGVDNIDLTAATRKGVLVLNA--PGGNFISACE 61
L VVG AG+ + + A R V VL+ P GN I C
Sbjct: 27 LDVVGEAGSVAEAMARVPAARPDVAVLDVRLPDGNGIELCR 67
>3ndc_A Precorrin-4 C(11)-methyltransferase; SAH; HET: SAH; 2.00A
{Rhodobacter capsulatus} PDB: 3nei_A
Length = 264
Score = 27.5 bits (62), Expect = 5.6
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 169 LINAEVLKKCKKGVRVVNVAR 189
L+ +L C G ++VN A
Sbjct: 39 LVPEALLAHCPPGAKIVNTAP 59
>3tsc_A Putative oxidoreductase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp}
Length = 277
Score = 27.5 bits (62), Expect = 5.6
Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 12/54 (22%)
Query: 96 LYGKTLAVLGLGR-IGREVALRMQAFGMKVIGFD-----------PMVSVEDAA 137
L G+ + G R GR A+RM A G +I D S +D +
Sbjct: 9 LEGRVAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLS 62
>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann
fold, transport, cell cycle, transferrin, flavoprotein,
alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB:
2vq3_A*
Length = 215
Score = 27.2 bits (60), Expect = 5.8
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 100 TLAVLGLGRIGREVALRMQAFGMKVI 125
+ +LG G R +A R+ G KV+
Sbjct: 30 KVGILGSGDFARSLATRLVGSGFKVV 55
>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics,
3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus
thuringiensis serovar kurstakorganism_taxid}
Length = 264
Score = 27.5 bits (62), Expect = 5.9
Identities = 7/45 (15%), Positives = 17/45 (37%), Gaps = 3/45 (6%)
Query: 95 ELYGKTLAVLGLGR-IGREVALRMQAFGMKVIGFDPMVSVEDAAK 138
+ + + + +G++V ++ A G V S A +
Sbjct: 4 GRFVRHALITAGTKGLGKQVTEKLLAKGYSVTVTY--HSDTTAME 46
>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol,
chiral alcohol, oxidoreductase; HET: NAD; 2.00A
{Agrobacterium tumefaciens}
Length = 263
Score = 27.5 bits (62), Expect = 6.0
Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 95 ELYGKTLAVLGLGR-IGREVALRMQAFGMKVIGFDPMVSVEDAAKL 139
+L G+ V G + IG +A + G V D + V A +
Sbjct: 9 DLSGRKAIVTGGSKGIGAAIARALDKAGATVAIAD--LDVMAAQAV 52
>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human
hydroxysteroid dehydrogenase like 2, SDHL2, STR
genomics, structural genomics consortium; HET: NAP;
2.25A {Homo sapiens}
Length = 346
Score = 27.5 bits (61), Expect = 6.0
Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 96 LYGKTLAVLGLGR-IGREVALRMQAFGMKVI 125
L G T+ + G R IG+ +AL+ G ++
Sbjct: 43 LAGCTVFITGASRGIGKAIALKAAKDGANIV 73
>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 3.00A {Sinorhizobium meliloti}
Length = 281
Score = 27.6 bits (62), Expect = 6.0
Identities = 11/62 (17%), Positives = 19/62 (30%), Gaps = 3/62 (4%)
Query: 96 LYGKTLAVLGLGR-IGREVALRMQAFGMKVI--GFDPMVSVEDAAKLNIASLGLEDIWPL 152
+ KT + G IG +A + G ++ GF + +
Sbjct: 23 MMTKTAVITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVAGLSSGTVLHHP 82
Query: 153 AD 154
AD
Sbjct: 83 AD 84
>2x8g_A Thioredoxin glutathione reductase; redox-active center,
detoxification pathway, oxidoreductase, flavoprotein;
HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A*
2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*
Length = 598
Score = 27.7 bits (62), Expect = 6.3
Identities = 14/98 (14%), Positives = 29/98 (29%), Gaps = 21/98 (21%)
Query: 99 KTLAVLGLGRIGREVALRMQAFGMKVI---------GFDPMVSVEDAAKLNIASLGLEDI 149
V+G + E A + + G V GFD ++ + + + G
Sbjct: 287 GKTLVIGASYVALECAGFLASLGGDVTVMVRSILLRGFDQQMA--EKVGDYMENHG---- 340
Query: 150 WPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNV 187
+ +P + + K G+ +V
Sbjct: 341 ------VKFAKLCVPDEIKQLKVVDTENNKPGLLLVKG 372
>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea,
hyperthermophIle, GAPDH, hyperthermophilic dehydrog
oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP:
c.2.1.3 d.81.1.1
Length = 340
Score = 27.4 bits (60), Expect = 6.5
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 99 KTLAVLGLGRIGREVALRMQAF-GMKVIG 126
+AV G G IG+ VA + MK++G
Sbjct: 2 VNVAVNGYGTIGKRVADAIIKQPDMKLVG 30
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE
beta, structural genomics, PSI-2; 1.90A {Pseudomonas
syringae PV}
Length = 247
Score = 27.1 bits (61), Expect = 6.7
Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 96 LYGKTLAVLGLGR-IGREVALRMQAFGMKVI 125
L G+ + V G R IG A A G V+
Sbjct: 12 LKGRVILVTGAARGIGAAAARAYAAHGASVV 42
>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein
structure initiative, PSI-biology; 2.50A {Sinorhizobium
meliloti}
Length = 280
Score = 27.2 bits (61), Expect = 6.7
Identities = 9/46 (19%), Positives = 15/46 (32%), Gaps = 3/46 (6%)
Query: 94 TELYGKTLAVLGLGR-IGREVALRMQAFGMKVIGFDPMVSVEDAAK 138
T+ V G R IG +A + A G + + +
Sbjct: 25 TQKARPVAIVTGGRRGIGLGIARALAASGFDIAITG--IGDAEGVA 68
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of
[NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET:
APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB:
3vti_A
Length = 761
Score = 27.4 bits (61), Expect = 7.3
Identities = 26/124 (20%), Positives = 44/124 (35%), Gaps = 14/124 (11%)
Query: 146 LEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCG 205
LE + +AD ++ I N I+ V R++ ARG L +K
Sbjct: 345 LEKLKDIADVFLLNNRDI---VNRIDDSVTSFNAGAERIIRRARGYAPQPILLKKEVKAS 401
Query: 206 HCG-GAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIRVAVEIAEQFIALAN 264
G K+ TF + K ++ H+G E +E E++ L
Sbjct: 402 ILAVGGFY--------KN--TFCMTKGHYAFISHHIGDLDNEKAFNYYIEQIERYKKLFR 451
Query: 265 TNPQ 268
+P+
Sbjct: 452 VDPE 455
>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition,
oxidoreductase; HET: NAD; 2.00A {Brevibacterium
saccharolyticum}
Length = 258
Score = 27.1 bits (61), Expect = 7.4
Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 3/51 (5%)
Query: 98 GKTLAVLGLGR-IGREVALRMQAFGMKVIGFDPMVSVEDAAKL--NIASLG 145
K V G + IGR ++ ++ A G + D E AA+ I +
Sbjct: 2 SKVAMVTGGAQGIGRGISEKLAADGFDIAVADLPQQEEQAAETIKLIEAAD 52
>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose
reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2
c.2.1.1
Length = 352
Score = 27.2 bits (61), Expect = 7.5
Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 14/89 (15%)
Query: 98 GKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIA-SLGLEDIWPLADYI 156
G T+ V+G G IG L +A+G V+ +L +A + G AD
Sbjct: 169 GTTVLVIGAGPIGLVSVLAAKAYGAFVVCTAR-----SPRRLEVAKNCG-------ADVT 216
Query: 157 TVHTPLIPQTKNLINAEVLKKCKKGVRVV 185
V P + ++I + V
Sbjct: 217 LVVDPAKEEESSII-ERIRSAIGDLPNVT 244
>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase,
oxidoreductase, structural genomics; 2.10A {Burkholderia
pseudomallei 1710B}
Length = 269
Score = 27.1 bits (61), Expect = 7.6
Identities = 8/36 (22%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 92 TGTELYGKTLAVLGLGR-IGREVALRMQAFGMKVIG 126
G+ + V G +G ++ R+ GM V
Sbjct: 19 PGSMQAKRVAFVTGGMGGLGAAISRRLHDAGMAVAV 54
>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics,
southeast collaboratory for structural genomics, secsg,
PSI; 1.90A {Clostridium thermocellum}
Length = 247
Score = 27.1 bits (61), Expect = 7.6
Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 4/56 (7%)
Query: 95 ELYGKTLAVLGLGR-IGREVALRMQAFGMKVIGFDPMVSVEDAAKL--NIASLGLE 147
+L GKT V G R +G+ +A ++ G ++ + + G+
Sbjct: 2 QLKGKTAIVTGSSRGLGKAIAWKLGNMGANIVLNG-SPASTSLDATAEEFKAAGIN 56
>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl
reductase, oxidoreductase; 1.49A {Mycobacterium
tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A
Length = 247
Score = 27.1 bits (61), Expect = 7.7
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 96 LYGKTLAVLGLGR-IGREVALRMQAFGMKVIG 126
+++ V G R IG +A R+ A G KV
Sbjct: 13 FVSRSVLVTGGNRGIGLAIAQRLAADGHKVAV 44
>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics,
oxidoreductase, S structural genomics center for
infectious disease, ssgcid; 2.09A {Bartonella henselae}
PDB: 3enn_A 3emk_A
Length = 266
Score = 27.1 bits (61), Expect = 7.8
Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 4/52 (7%)
Query: 95 ELYGKTLAVLGLGR-IGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLG 145
+L G+ V G IG +A A G V + ++ A LG
Sbjct: 24 KLTGRKALVTGATGGIGEAIARCFHAQGAIVGLHG--TREDKLKEI-AADLG 72
>2d59_A Hypothetical protein PH1109; COA binding, structural genomics;
1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A*
2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*
Length = 144
Score = 26.5 bits (59), Expect = 8.0
Identities = 7/31 (22%), Positives = 11/31 (35%), Gaps = 4/31 (12%)
Query: 99 KTLAVLGL----GRIGREVALRMQAFGMKVI 125
K +A++G R V + G V
Sbjct: 23 KKIALVGASPKPERDANIVMKYLLEHGYDVY 53
>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
tuberculosis; 1.80A {Mycobacterium avium}
Length = 322
Score = 27.3 bits (61), Expect = 8.1
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 96 LYGKTLAVLGLGR-IGREVALRMQAFGMKVI 125
+ G+ + V G G IGR AL A G +V+
Sbjct: 25 VDGRVVIVTGAGGGIGRAHALAFAAEGARVV 55
>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid,
SBRI, UW, emerald biostructures, structu genomics; 2.50A
{Mycobacterium thermoresistibile}
Length = 285
Score = 27.2 bits (61), Expect = 8.1
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 96 LYGKTLAVLGLGR-IGREVALRMQAFGMKVI 125
L GKT+ + G R IG +A R+ A G V
Sbjct: 7 LRGKTMFISGGSRGIGLAIAKRVAADGANVA 37
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural
genomics, PSI-2, Pro structure initiative; HET: MSE AMP;
1.79A {Escherichia coli k-12}
Length = 140
Score = 26.3 bits (59), Expect = 8.2
Identities = 8/41 (19%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 103 VLGLGRIGREVALRMQAFGMK--VIGFDPMVSVEDAAKLNI 141
++G GR+G + ++ A + VI V++ + +
Sbjct: 12 LVGYGRVGSLLGEKLLASDIPLVVIETSRTR-VDELRERGV 51
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease; 1.75A {Mycobacterium smegmatis}
Length = 262
Score = 27.1 bits (61), Expect = 8.4
Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 3/46 (6%)
Query: 95 ELYGKTLAVLGLGR-IGREVALRMQAFGMKVIGFDPMVSVEDAAKL 139
+L G+++ V G + IGR +A G V S D
Sbjct: 7 DLQGRSVVVTGGTKGIGRGIATVFARAGANVAVAG--RSTADIDAC 50
>2duw_A Putative COA-binding protein; ligand binding protein; NMR
{Klebsiella pneumoniae}
Length = 145
Score = 26.6 bits (59), Expect = 8.5
Identities = 19/105 (18%), Positives = 38/105 (36%), Gaps = 13/105 (12%)
Query: 99 KTLAVLGL----GRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLAD 154
+T+A++G R V + G VI P V+ + + L D+ D
Sbjct: 14 RTIALVGASDKPDRPSYRVMKYLLDQGYHVIPVSPKVAGKTLLGQQGYA-TLADVPEKVD 72
Query: 155 YITVHTPLIPQTKNLINAEVLKKC-KKGVRVVNVARGGIVDENAL 198
+ V + V ++ G + + + G+++E A
Sbjct: 73 MVDVFRN--SEAA----WGVAQEAIAIGAKTL-WLQLGVINEQAA 110
>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET:
NAP; 2.20A {Rattus norvegicus}
Length = 201
Score = 26.9 bits (59), Expect = 8.5
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 100 TLAVLGLGRIGREVALRMQAFGMKVI 125
+ + G G G+ + L+M G V+
Sbjct: 21 VVCIFGTGDFGKSLGLKMLQCGYSVV 46
>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
NAD; 1.85A {Mycobacterium avium}
Length = 280
Score = 27.1 bits (61), Expect = 8.6
Identities = 15/54 (27%), Positives = 20/54 (37%), Gaps = 12/54 (22%)
Query: 96 LYGKTLAVLGLGR-IGREVALRMQAFGMKVIGFD-----------PMVSVEDAA 137
L G+ + G R GR A+R+ A G +I D S ED
Sbjct: 13 LQGRVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLD 66
>2zjr_W 50S ribosomal protein L30; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: d.59.1.1 PDB: 1nwx_X* 1nwy_X* 1pnu_X
1pny_X 1sm1_X* 1vor_Z 1vou_Z 1vow_Z 1voy_Z 1vp0_Z
1xbp_X* 2zjp_W* 2zjq_W 1nkw_X 3cf5_W* 3dll_W* 3pio_W*
3pip_W*
Length = 55
Score = 24.7 bits (55), Expect = 8.8
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 15/45 (33%)
Query: 99 KTLAVLGLGRIGREV------ALRMQAFGM--KVIGFDPMVSVED 135
KT+ LGL +IG A+R GM V ++ V++
Sbjct: 18 KTVQALGLRKIGDSREVSDTPAVR----GMVKTV---KHLLEVQE 55
>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase;
1.99A {Streptomyces coelicolor}
Length = 253
Score = 26.7 bits (60), Expect = 9.1
Identities = 9/33 (27%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 95 ELYGKTLAVLGLGR-IGREVALRMQAFGMKVIG 126
+++ V G R IG +A G KV
Sbjct: 18 SHMSRSVLVTGGNRGIGLAIARAFADAGDKVAI 50
>2aef_A Calcium-gated potassium channel MTHK; rossmann fold,
helix-turn-helix, Ca2+ binding, flexible interface;
1.70A {Methanothermobacterthermautotrophicus} PDB:
2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A
Length = 234
Score = 26.9 bits (60), Expect = 9.1
Identities = 4/39 (10%), Positives = 11/39 (28%), Gaps = 1/39 (2%)
Query: 103 VLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNI 141
+ G E ++ + V+ D + +
Sbjct: 14 ICGWSESTLECLRELRGSEVFVLAEDE-NVRKKVLRSGA 51
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, NAD,
tuberculosis; HET: NAD; 2.00A {Mycobacterium avium}
Length = 287
Score = 26.8 bits (60), Expect = 9.6
Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 11/53 (20%)
Query: 96 LYGKTLAVLGLGR-IGREVALRMQAFGMKVIGFD----------PMVSVEDAA 137
+ K + V G R GR A+++ G +I FD P+ + D
Sbjct: 8 VQDKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLE 60
>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold,
oxidoreductase; HET: BMA; 1.60A {Thermoplasma
acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A
Length = 264
Score = 26.8 bits (60), Expect = 9.6
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 94 TELYGKTLAVLGLGR-IGREVALRMQAFGMKVIGFD 128
++L K + V G IGR +A R G KVI
Sbjct: 4 SDLRDKVVIVTGASMGIGRAIAERFVDEGSKVIDLS 39
>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A
{Gluconobacter oxydans}
Length = 260
Score = 26.7 bits (60), Expect = 9.6
Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Query: 96 LYGKTLAVLGLGR-IGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLE 147
L + V G + IG + G +VI D ++ A ++ G +
Sbjct: 11 LDNRVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRMEGHD 63
>1cbf_A Cobalt-precorrin-4 transmethylase; precorrin-4 methyltransferase,
cobalamin biosynth methyltransferase; HET: SAH; 2.40A
{Bacillus megaterium} SCOP: c.90.1.1 PDB: 2cbf_A*
Length = 285
Score = 26.8 bits (60), Expect = 9.7
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 169 LINAEVLKKCKKGVRVVNVA 188
L++ +++ K K G V+ A
Sbjct: 56 LVSQDLIAKSKPGAEVLKTA 75
>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural
genomics, putative 3-oxoacyl-(acyl carrier protei
reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus
anthracis str}
Length = 255
Score = 26.7 bits (60), Expect = 9.8
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 94 TELYGKTLAVLGLGR-IGREVALRMQAFGMKVI 125
+ L GK V G R IGR +A R+ G V
Sbjct: 3 SMLKGKVALVTGASRGIGRAIAKRLANDGALVA 35
>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase,
oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei
brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A*
3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A*
3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A*
3jq6_A* ...
Length = 288
Score = 26.8 bits (60), Expect = 9.9
Identities = 9/34 (26%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 93 GTELYGKTLAVLGLGR-IGREVALRMQAFGMKVI 125
G+ + V G + IGR +A+++ G +V+
Sbjct: 18 GSHMEAPAAVVTGAAKRIGRAIAVKLHQTGYRVV 51
>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase, FAT
biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia
prowazekii}
Length = 249
Score = 26.7 bits (60), Expect = 10.0
Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 3/53 (5%)
Query: 88 RKLYTGTELYGKTLAVLGLGR-IGREVALRMQAFGMKVIGFDPMVSVEDAAKL 139
+ +L GKT + G IG +A + G KVI + E L
Sbjct: 4 HHHHHMIDLTGKTSLITGASSGIGSAIARLLHKLGSKVIISG--SNEEKLKSL 54
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.132 0.374
Gapped
Lambda K H
0.267 0.0783 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,893,877
Number of extensions: 304056
Number of successful extensions: 1270
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1141
Number of HSP's successfully gapped: 241
Length of query: 333
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 239
Effective length of database: 4,077,219
Effective search space: 974455341
Effective search space used: 974455341
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (25.6 bits)