BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6349
(145 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VJ3|A Chain A, Human Notch-1 Egfs 11-13
Length = 135
Score = 99.4 bits (246), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 62/97 (63%)
Query: 18 HNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQG 77
H G C + S C C++GYTG C I++NEC S+PCQN ATC D IG + C C G++G
Sbjct: 17 HAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCICMPGYEG 76
Query: 78 QNCELNVDDCKPNPCQNGGICHDLINHFSCSCPSGLK 114
+CE+N D+C +PC + G C D IN F C CP+G
Sbjct: 77 VHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFT 113
Score = 63.2 bits (152), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 53/105 (50%), Gaps = 14/105 (13%)
Query: 45 EINECE--SDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDDCKPNPCQNGGICHDLI 102
+++EC ++PC++ C + +G + CQC +G+ G CE++V++C NPCQN C D I
Sbjct: 4 DVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQI 63
Query: 103 NHFSCSCPSGLK------------REALCHNGTCEDFGNSHRCHC 135
F C C G + HNG C D N +C C
Sbjct: 64 GEFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCEC 108
Score = 52.4 bits (124), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 36/66 (54%)
Query: 19 NGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQGQ 78
+ TC D +C CM GY G +C + +EC S PC + C D I + C+C GF G
Sbjct: 56 DATCLDQIGEFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTGH 115
Query: 79 NCELNV 84
C++++
Sbjct: 116 LCQVDL 121
Score = 29.3 bits (64), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 18 HNGTCEDFGNSHRCHCMEGYTGSYCSIEIN 47
HNG C D N +C C G+TG C ++++
Sbjct: 93 HNGRCLDKINEFQCECPTGFTGHLCQVDLH 122
>pdb|1TOZ|A Chain A, Nmr Structure Of The Human Notch-1 Ligand Binding Region
Length = 116
Score = 98.6 bits (244), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 62/97 (63%)
Query: 18 HNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQG 77
H G C + S C C++GYTG C I++NEC S+PCQN ATC D IG + C C G++G
Sbjct: 15 HAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCICMPGYEG 74
Query: 78 QNCELNVDDCKPNPCQNGGICHDLINHFSCSCPSGLK 114
+CE+N D+C +PC + G C D IN F C CP+G
Sbjct: 75 VHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFT 111
Score = 62.8 bits (151), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 53/105 (50%), Gaps = 14/105 (13%)
Query: 45 EINECE--SDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDDCKPNPCQNGGICHDLI 102
+++EC ++PC++ C + +G + CQC +G+ G CE++V++C NPCQN C D I
Sbjct: 2 DVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQI 61
Query: 103 NHFSCSCPSGLK------------REALCHNGTCEDFGNSHRCHC 135
F C C G + HNG C D N +C C
Sbjct: 62 GEFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCEC 106
Score = 50.1 bits (118), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 34/64 (53%)
Query: 18 HNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQG 77
++ TC D +C CM GY G +C + +EC S PC + C D I + C+C GF G
Sbjct: 53 NDATCLDQIGEFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTG 112
Query: 78 QNCE 81
C+
Sbjct: 113 HLCQ 116
>pdb|4D90|A Chain A, Crystal Structure Of Del-1 Egf Domains
pdb|4D90|B Chain B, Crystal Structure Of Del-1 Egf Domains
Length = 143
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 57/102 (55%), Gaps = 19/102 (18%)
Query: 28 SHRCHCMEGYTGSYCS--IEI----------NECESDPCQNGATCQ-------DLIGGYS 68
S C C +G+T CS +E+ C +PC NG TC+ D GY
Sbjct: 22 SFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHNGGTCEISEAYRGDTFIGYV 81
Query: 69 CQCARGFQGQNCELNVDDCKPNPCQNGGICHDLINHFSCSCP 110
C+C RGF G +C+ N+++C+ PC+NGGIC DL+ ++SC CP
Sbjct: 82 CKCPRGFNGIHCQHNINECEVEPCKNGGICTDLVANYSCECP 123
Score = 58.9 bits (141), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 45/84 (53%), Gaps = 8/84 (9%)
Query: 7 SSPGLKREALCHNG-TCE-------DFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGA 58
+S G CHNG TCE D + C C G+ G +C INECE +PC+NG
Sbjct: 50 TSAGPCTPNPCHNGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQHNINECEVEPCKNGG 109
Query: 59 TCQDLIGGYSCQCARGFQGQNCEL 82
C DL+ YSC+C F G+NC+
Sbjct: 110 ICTDLVANYSCECPGEFMGRNCQY 133
Score = 33.9 bits (76), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 85 DDCKPNPCQNGGICHDLI--NHFSCSCPSGLK 114
D C PNPC+NGGIC + FSC CP G
Sbjct: 1 DICDPNPCENGGICLPGLADGSFSCECPDGFT 32
>pdb|1EZQ|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr128515
pdb|1F0R|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208815
pdb|1F0S|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208707
pdb|1KSN|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Fxv673
pdb|1NFW|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr209685
pdb|1NFX|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208944
pdb|1NFY|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr200095
pdb|1LPG|A Chain A, Crystal Structure Of Fxa In Complex With 79.
pdb|1LPK|A Chain A, Crystal Structure Of Fxa In Complex With 125.
pdb|1LPZ|A Chain A, Crystal Structure Of Fxa In Complex With 41.
pdb|1LQD|A Chain A, Crystal Structure Of Fxa In Complex With 45.
pdb|2BOH|A Chain A, Crystal Structure Of Factor Xa In Complex With Compound
"1"
pdb|2CJI|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J2U|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J34|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J38|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J4I|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J94|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J95|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2UWL|B Chain B, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWO|B Chain B, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWP|B Chain B, Factor Xa Inhibitor Complex
pdb|2VH0|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Biaryl Pyrrolidin-2-Ones Incorporating Basic
Heterocyclic Motifs
pdb|2VH6|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Biaryl P4 Motifs
pdb|2WYG|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2WYJ|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2Y7X|B Chain B, The Discovery Of Potent And Long-Acting Oral Factor Xa
Inhibitors With Tetrahydroisoquinoline And Benzazepine
P4 Motifs
pdb|2Y7Z|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y80|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y81|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y82|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
Length = 134
Score = 50.4 bits (119), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Query: 47 NECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDD-CKPNPCQNGGICHDLINHF 105
++CE+ PCQN C+D +G Y+C C GF+G+NCEL C + CH+ N
Sbjct: 43 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSV 102
Query: 106 SCSCPSGLKREALCHNG 122
CSC G L NG
Sbjct: 103 VCSCARGY---TLADNG 116
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 9/62 (14%)
Query: 85 DDCKPNPCQNGGICHDLINHFSCSCPSGLK-------REALCH--NGTCEDFGNSHRCHC 135
D C+ +PCQN G C D + ++C+C G + LC NG C+ F + +
Sbjct: 43 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSV 102
Query: 136 IC 137
+C
Sbjct: 103 VC 104
Score = 26.6 bits (57), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 18 HNGTCEDFGNSHRCHCMEGYTGSYCSIEINE-CESDPCQNGATCQDLIGGYSCQCARGF 75
+ G C+D + C C+EG+ G C + + C D C + C CARG+
Sbjct: 52 NQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGY 110
>pdb|1P0S|L Chain L, Crystal Structure Of Blood Coagulation Factor Xa In
Complex With Ecotin M84r
Length = 138
Score = 50.1 bits (118), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 47 NECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDD-CKPNPCQNGGICHDLINHF 105
++CE+ PCQN C+D +G Y+C C GF+G+NCEL C + CH+ N
Sbjct: 48 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSV 107
Query: 106 SCSCPSG 112
CSC G
Sbjct: 108 VCSCARG 114
Score = 31.6 bits (70), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 9/62 (14%)
Query: 85 DDCKPNPCQNGGICHDLINHFSCSCPSG-------LKREALCH--NGTCEDFGNSHRCHC 135
D C+ +PCQN G C D + ++C+C G L LC NG C+ F + +
Sbjct: 48 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSV 107
Query: 136 IC 137
+C
Sbjct: 108 VC 109
Score = 26.9 bits (58), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 18 HNGTCEDFGNSHRCHCMEGYTGSYCSIEINE-CESDPCQNGATCQDLIGGYSCQCARGF 75
+ G C+D + C C+EG+ G C + + C D C + C CARG+
Sbjct: 57 NQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGY 115
>pdb|1NFU|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr132747
Length = 195
Score = 49.7 bits (117), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Query: 47 NECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDD-CKPNPCQNGGICHDLINHF 105
++CE+ PCQN C+D +G Y+C C GF+G+NCEL C + CH+ N
Sbjct: 43 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSV 102
Query: 106 SCSCPSGLKREALCHNG 122
CSC G L NG
Sbjct: 103 VCSCARGY---TLADNG 116
Score = 32.0 bits (71), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 9/62 (14%)
Query: 85 DDCKPNPCQNGGICHDLINHFSCSCPSGLK-------REALC--HNGTCEDFGNSHRCHC 135
D C+ +PCQN G C D + ++C+C G + LC NG C+ F + +
Sbjct: 43 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSV 102
Query: 136 IC 137
+C
Sbjct: 103 VC 104
Score = 26.2 bits (56), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 18 HNGTCEDFGNSHRCHCMEGYTGSYCSIEINE-CESDPCQNGATCQDLIGGYSCQCARGF 75
+ G C+D + C C+EG+ G C + + C D C + C CARG+
Sbjct: 52 NQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGY 110
>pdb|1IOE|L Chain L, Human Coagulation Factor Xa In Complex With M55532
pdb|1IQE|L Chain L, Human Coagulation Factor Xa In Complex With M55590
pdb|1IQF|L Chain L, Human Coagulation Factor Xa In Complex With M55165
pdb|1IQG|L Chain L, Human Coagulation Factor Xa In Complex With M55159
pdb|1IQH|L Chain L, Human Coagulation Factor Xa In Complex With M55143
pdb|1IQI|L Chain L, Human Coagulation Factor Xa In Complex With M55125
pdb|1IQJ|L Chain L, Human Coagulation Factor Xa In Complex With M55124
pdb|1IQK|L Chain L, Human Coagulation Factor Xa In Complex With M55113
pdb|1IQL|L Chain L, Human Coagulation Factor Xa In Complex With M54476
pdb|1IQM|L Chain L, Human Coagulation Factor Xa In Complex With M54471
pdb|1IQN|L Chain L, Human Coagulation Factor Xa In Complex With M55192
pdb|1C5M|F Chain F, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|4A7I|A Chain A, Factor Xa In Complex With A Potent 2-Amino-Ethane
Sulfonamide Inhibitor
Length = 96
Score = 48.9 bits (115), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 47 NECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDD-CKPNPCQNGGICHDLINHF 105
++CE+ PCQN C+D +G Y+C C GF+G+NCEL C + CH+ N
Sbjct: 5 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSV 64
Query: 106 SCSCPSG 112
CSC G
Sbjct: 65 VCSCARG 71
Score = 31.6 bits (70), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 9/62 (14%)
Query: 85 DDCKPNPCQNGGICHDLINHFSCSCPSGLK-------REALCH--NGTCEDFGNSHRCHC 135
D C+ +PCQN G C D + ++C+C G + LC NG C+ F + +
Sbjct: 5 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSV 64
Query: 136 IC 137
+C
Sbjct: 65 VC 66
Score = 26.6 bits (57), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 18 HNGTCEDFGNSHRCHCMEGYTGSYCSIEINE-CESDPCQNGATCQDLIGGYSCQCARGF 75
+ G C+D + C C+EG+ G C + + C D C + C CARG+
Sbjct: 14 NQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGY 72
>pdb|1G2L|B Chain B, Factor Xa Inhibitor Complex
pdb|1G2M|B Chain B, Factor Xa Inhibitor Complex
Length = 94
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 47 NECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDD-CKPNPCQNGGICHDLINHF 105
++CE+ PCQN C+D +G Y+C C GF+G+NCEL C + CH+ N
Sbjct: 3 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSV 62
Query: 106 SCSCPSG 112
CSC G
Sbjct: 63 VCSCARG 69
Score = 31.6 bits (70), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 9/62 (14%)
Query: 85 DDCKPNPCQNGGICHDLINHFSCSCPSGLK-------REALCH--NGTCEDFGNSHRCHC 135
D C+ +PCQN G C D + ++C+C G + LC NG C+ F + +
Sbjct: 3 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSV 62
Query: 136 IC 137
+C
Sbjct: 63 VC 64
Score = 26.9 bits (58), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 18 HNGTCEDFGNSHRCHCMEGYTGSYCSIEINE-CESDPCQNGATCQDLIGGYSCQCARGF 75
+ G C+D + C C+EG+ G C + + C D C + C CARG+
Sbjct: 12 NQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGY 70
>pdb|3ENS|A Chain A, Crystal Structure Of Human Fxa In Complex With Methyl
(2z)-3-[(3-
Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-(2-
oxo-2- Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate
pdb|3ENS|C Chain C, Crystal Structure Of Human Fxa In Complex With Methyl
(2z)-3-[(3-
Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-(2-
oxo-2- Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate
pdb|3HPT|A Chain A, Crystal Structure Of Human Fxa In Complex With
(S)-2-Cyano-1-(2-
Methylbenzofuran-5-Yl)-3-(2-Oxo-1-(2-Oxo-2-(Pyrrolidin-
1-Yl)ethyl) Azepan-3-Yl)guanidine
pdb|3HPT|C Chain C, Crystal Structure Of Human Fxa In Complex With
(S)-2-Cyano-1-(2-
Methylbenzofuran-5-Yl)-3-(2-Oxo-1-(2-Oxo-2-(Pyrrolidin-
1-Yl)ethyl) Azepan-3-Yl)guanidine
pdb|3K9X|A Chain A, X-Ray Crystal Structure Of Human Fxa In Complex With
(S)-N-((2- Methylbenzofuran-5-Ylamino)(2-Oxo-1-(2-Oxo-2-
(Pyrrolidin-1-Yl) Ethyl)azepan-3-
Ylamino)methylene)nicotinamide
pdb|3K9X|C Chain C, X-Ray Crystal Structure Of Human Fxa In Complex With
(S)-N-((2- Methylbenzofuran-5-Ylamino)(2-Oxo-1-(2-Oxo-2-
(Pyrrolidin-1-Yl) Ethyl)azepan-3-
Ylamino)methylene)nicotinamide
pdb|3SW2|A Chain A, X-Ray Crystal Structure Of Human Fxa In Complex With
6-Chloro-N-((3s)-
2-Oxo-1-(2-Oxo-2-((5s)-8-Oxo-5,6-Dihydro-1h-1,
5-Methanopyrido[1,2-
A][1,5]diazocin-3(2h,4h,
8h)-Yl)ethyl)piperidin-3-Yl)naphthalene-2- Sulfonamide
Length = 94
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 47 NECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDD-CKPNPCQNGGICHDLINHF 105
++CE+ PCQN C+D +G Y+C C GF+G+NCEL C + CH+ N
Sbjct: 4 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSV 63
Query: 106 SCSCPSG 112
CSC G
Sbjct: 64 VCSCARG 70
Score = 31.6 bits (70), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 9/62 (14%)
Query: 85 DDCKPNPCQNGGICHDLINHFSCSCPSGLK-------REALCH--NGTCEDFGNSHRCHC 135
D C+ +PCQN G C D + ++C+C G + LC NG C+ F + +
Sbjct: 4 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSV 63
Query: 136 IC 137
+C
Sbjct: 64 VC 65
Score = 26.9 bits (58), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 18 HNGTCEDFGNSHRCHCMEGYTGSYCSIEINE-CESDPCQNGATCQDLIGGYSCQCARGF 75
+ G C+D + C C+EG+ G C + + C D C + C CARG+
Sbjct: 13 NQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGY 71
>pdb|2H9E|L Chain L, Crystal Structure Of FxaSELECTIDENAPC2 TERNARY COMPLEX
Length = 149
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Query: 47 NECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDD-CKPNPCQNGGICHDLINHF 105
++CE+ PCQN C+D +G Y+C C GF+G+NCEL C + CH+ N
Sbjct: 3 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSV 62
Query: 106 SCSCPSGLKREALCHNG 122
CSC G L NG
Sbjct: 63 VCSCARGY---TLADNG 76
Score = 31.6 bits (70), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 9/62 (14%)
Query: 85 DDCKPNPCQNGGICHDLINHFSCSCPSGLK-------REALCH--NGTCEDFGNSHRCHC 135
D C+ +PCQN G C D + ++C+C G + LC NG C+ F + +
Sbjct: 3 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSV 62
Query: 136 IC 137
+C
Sbjct: 63 VC 64
Score = 26.6 bits (57), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 18 HNGTCEDFGNSHRCHCMEGYTGSYCSIEINE-CESDPCQNGATCQDLIGGYSCQCARGF 75
+ G C+D + C C+EG+ G C + + C D C + C CARG+
Sbjct: 12 NQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGY 70
>pdb|3H5C|B Chain B, X-Ray Structure Of Protein Z-Protein Z Inhibitor Complex
Length = 317
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Query: 47 NECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDDCKP---NPCQNGGICHDLIN 103
+ C S PC + +CQD I GY+C C+ G++G NCEL ++C P + CQ+ C
Sbjct: 6 SPCISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQH--FCLPGQE 63
Query: 104 HFSCSCPSGLK 114
++CSC G +
Sbjct: 64 SYTCSCAQGYR 74
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 18 HNGTCEDFGNSHRCHCMEGYTGSYCSIEINEC---ESDPCQNGATCQDLIGGYSCQCARG 74
HNG+C+D + C C GY GS C + NEC +D CQ+ C Y+C CA+G
Sbjct: 15 HNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQH--FCLPGQESYTCSCAQG 72
Query: 75 FQ 76
++
Sbjct: 73 YR 74
>pdb|1Z6J|L Chain L, Crystal Structure Of A Ternary Complex Of Factor
Viia/tissue Factor/pyrazinone Inhibitor
pdb|2AER|L Chain L, Crystal Structure Of Benzamidine-Factor ViiaSOLUBLE TISSUE
Factor Complex.
pdb|2FIR|L Chain L, Crystal Structure Of Dfpr-ViiaSTF
pdb|2C4F|L Chain L, Crystal Structure Of Factor Vii.Stf Complexed With
Pd0297121
pdb|2B8O|L Chain L, Crystal Structure Of Glu-gly-arg-chloromethyl
Ketone-factor Viia/soluble Tissue Factor Complex
pdb|2EC9|L Chain L, Crystal Structure Analysis Of Human Factor Viia , Souluble
Tissue Factor Complexed With Bcx-3607
pdb|3TH2|L Chain L, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
pdb|3TH3|L Chain L, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
pdb|3TH4|L Chain L, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
Length = 142
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 41/76 (53%), Gaps = 6/76 (7%)
Query: 47 NECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDDCKPNPCQNGGICHDLINHFS 106
++C S PCQNG +C+D + Y C C F+G+NCE + DD +NGG C
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGG-CEQY----- 101
Query: 107 CSCPSGLKREALCHNG 122
CS +G KR CH G
Sbjct: 102 CSDHTGTKRSCRCHEG 117
>pdb|1W0Y|L Chain L, Tf7a_3771 Complex
pdb|1W2K|L Chain L, Tf7a_4380 Complex
Length = 142
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 41/76 (53%), Gaps = 6/76 (7%)
Query: 47 NECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDDCKPNPCQNGGICHDLINHFS 106
++C S PCQNG +C+D + Y C C F+G+NCE + DD +NGG C
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGG-CEQY----- 101
Query: 107 CSCPSGLKREALCHNG 122
CS +G KR CH G
Sbjct: 102 CSDHTGTKRSCRCHEG 117
>pdb|1DAN|L Chain L, Complex Of Active Site Inhibited Human Blood Coagulation
Factor Viia With Human Recombinant Soluble Tissue Factor
pdb|1FAK|L Chain L, Human Tissue Factor Complexed With Coagulation Factor Viia
Inhibited With A Bpti-Mutant
pdb|1WQV|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Propylsulfonamide-D- Thr-Met-P-Aminobenzamidine
pdb|1WSS|L Chain L, Human Factor Viia-Tissue Factor In Complex With Peprid
Mimetic Inhibitor That Has Two Charge Groups In P2 And
P4
pdb|1WTG|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-Biphenylalanine-Gln-P-
Aminobenzamidine
pdb|1WUN|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-Trp-Gln-P-Aminobenzamidine
pdb|1WV7|L Chain L, Human Factor Viia-tissue Factor Complexed With
Ethylsulfonamide-d-5-propoxy-trp-gln-p-aminobenzamidine
pdb|2A2Q|L Chain L, Complex Of Active-Site Inhibited Human Coagulation Factor
Viia With Human Soluble Tissue Factor In The Presence Of
Ca2+, Mg2+, Na+, And Zn2+
pdb|2AEI|L Chain L, Crystal Structure Of A Ternary Complex Of Factor
ViiaTISSUE FACTOR And
2-[[6-[3-(Aminoiminomethyl)phenoxy]-3,
5-Difluro-4-[(1-Methyl-3-
Phenylpropyl)amino]-2-Pyridinyl]oxy]-Benzoic Acid
pdb|2ZP0|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Benzylsulfonamide-D- Ile-Gln-P-Aminobenzamidine
pdb|2ZWL|L Chain L, Human Factor Viia-Tissue Factor Complexed With Highly
Selective Peptide Inhibitor
pdb|2ZZU|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-5-
(3-Carboxybenzyloxy)-Trp-Gln-P-Aminobenzamidine
Length = 152
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 41/76 (53%), Gaps = 6/76 (7%)
Query: 47 NECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDDCKPNPCQNGGICHDLINHFS 106
++C S PCQNG +C+D + Y C C F+G+NCE + DD +NGG C
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGG-CEQY----- 101
Query: 107 CSCPSGLKREALCHNG 122
CS +G KR CH G
Sbjct: 102 CSDHTGTKRSCRCHEG 117
>pdb|1O5D|L Chain L, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (Ala190 Upa)
pdb|2B7D|L Chain L, Factor Viia Inhibitors: Chemical Optimization, Preclinical
Pharmacokinetics, Pharmacodynamics, And Efficacy In A
Baboon Thrombosis Model
pdb|2F9B|L Chain L, Discovery Of Novel Heterocyclic Factor Viia Inhibitors
pdb|2FLB|L Chain L, Discovery Of A Novel Hydroxy Pyrazole Based Factor Ixa
Inhibitor
pdb|2FLR|L Chain L, Novel 5-azaindole Factor Viia Inhibitors
pdb|3ELA|L Chain L, Crystal Structure Of Active Site Inhibited Coagulation
Factor Viia Mutant In Complex With Soluble Tissue Factor
Length = 152
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 41/76 (53%), Gaps = 6/76 (7%)
Query: 47 NECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDDCKPNPCQNGGICHDLINHFS 106
++C S PCQNG +C+D + Y C C F+G+NCE + DD +NGG C
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGG-CEQY----- 101
Query: 107 CSCPSGLKREALCHNG 122
CS +G KR CH G
Sbjct: 102 CSDHTGTKRSCRCHEG 117
>pdb|1DVA|L Chain L, Crystal Structure Of The Complex Between The Peptide
Exosite Inhibitor E-76 And Coagulation Factor Viia
pdb|1DVA|M Chain M, Crystal Structure Of The Complex Between The Peptide
Exosite Inhibitor E-76 And Coagulation Factor Viia
Length = 101
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 41/76 (53%), Gaps = 6/76 (7%)
Query: 47 NECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDDCKPNPCQNGGICHDLINHFS 106
++C S PCQNG +C+D + Y C C F+G+NCE + DD +NGG C
Sbjct: 7 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGG-CEQY----- 60
Query: 107 CSCPSGLKREALCHNG 122
CS +G KR CH G
Sbjct: 61 CSDHTGTKRSCRCHEG 76
>pdb|1J9C|L Chain L, Crystal Structure Of Tissue Factor-Factor Viia Complex
Length = 95
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 41/76 (53%), Gaps = 6/76 (7%)
Query: 47 NECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDDCKPNPCQNGGICHDLINHFS 106
++C S PCQNG +C+D + Y C C F+G+NCE + DD +NGG C
Sbjct: 1 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGG-CEQY----- 54
Query: 107 CSCPSGLKREALCHNG 122
CS +G KR CH G
Sbjct: 55 CSDHTGTKRSCRCHEG 70
>pdb|1EDM|B Chain B, Epidermal Growth Factor-Like Domain From Human Factor Ix
pdb|1EDM|C Chain C, Epidermal Growth Factor-Like Domain From Human Factor Ix
pdb|1IXA|A Chain A, The Three-Dimensional Structure Of The First Egf-Like
Module Of Human Factor Ix: Comparison With Egf And
Tgf-A
Length = 39
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 29/39 (74%)
Query: 44 IEINECESDPCQNGATCQDLIGGYSCQCARGFQGQNCEL 82
++ ++CES+PC NG +C+D I Y C C GF+G+NCEL
Sbjct: 1 VDGDQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCEL 39
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 82 LNVDDCKPNPCQNGGICHDLINHFSCSCPSGLK 114
++ D C+ NPC NGG C D IN + C CP G +
Sbjct: 1 VDGDQCESNPCLNGGSCKDDINSYECWCPFGFE 33
>pdb|2PUQ|L Chain L, Crystal Structure Of Active Site Inhibited Coagulation
Factor Viia In Complex With Soluble Tissue Factor
Length = 94
Score = 46.6 bits (109), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Query: 48 ECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDDCKPNPCQNGGICHDLINHFSC 107
+C S PCQNG +C+D + Y C C F+G+NCE + DD +NGG C C
Sbjct: 1 QCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGG-CEQY-----C 54
Query: 108 SCPSGLKREALCHNG 122
S +G KR CH G
Sbjct: 55 SDHTGTKRSCRCHEG 69
>pdb|1FAX|L Chain L, Coagulation Factor Xa Inhibitor Complex
Length = 96
Score = 46.6 bits (109), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 47 NECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDD-CKPNPCQNGGICHDLINHF 105
++CE+ PCQN C+D +G Y+C C GF+G+NCEL C + CH+
Sbjct: 5 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQASV 64
Query: 106 SCSCPSG 112
CSC G
Sbjct: 65 VCSCARG 71
Score = 32.7 bits (73), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 9/62 (14%)
Query: 85 DDCKPNPCQNGGICHDLINHFSCSCPSG-------LKREALCH--NGTCEDFGNSHRCHC 135
D C+ +PCQN G C D + ++C+C G L LC NG C+ F + +
Sbjct: 5 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQASV 64
Query: 136 IC 137
+C
Sbjct: 65 VC 66
Score = 26.9 bits (58), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 18 HNGTCEDFGNSHRCHCMEGYTGSYCSIEINE-CESDPCQNGATCQDLIGGYSCQCARGF 75
+ G C+D + C C+EG+ G C + + C D C + C CARG+
Sbjct: 14 NQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQASVVCSCARGY 72
>pdb|1QFK|L Chain L, Structure Of Human Factor Viia And Its Implications For
The Triggering Of Blood Coagulation
Length = 104
Score = 46.6 bits (109), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Query: 48 ECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDDCKPNPCQNGGICHDLINHFSC 107
+C S PCQNG +C+D + Y C C F+G+NCE + DD +NGG C C
Sbjct: 1 QCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGG-CEQY-----C 54
Query: 108 SCPSGLKREALCHNG 122
S +G KR CH G
Sbjct: 55 SDHTGTKRSCRCHEG 69
>pdb|1XKA|L Chain L, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1XKB|A Chain A, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1XKB|B Chain B, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1WU1|B Chain B, Factor Xa In Complex With The Inhibitor
4-[(5-Chloroindol-2-Yl)
Sulfonyl]-2-(2-Methylpropyl)-1-[[5-(Pyridin-4-Yl)
Pyrimidin-2- Yl]carbonyl]piperazine
Length = 95
Score = 46.2 bits (108), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 47 NECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDD-CKPNPCQNGGICHDLINHF 105
++CE+ PCQN C+ +G Y+C C GF+G+NCEL C + CH+ N
Sbjct: 4 DQCETSPCQNQGKCKXGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSV 63
Query: 106 SCSCPSG 112
CSC G
Sbjct: 64 VCSCARG 70
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 9/62 (14%)
Query: 85 DDCKPNPCQNGGICHDLINHFSCSCPSGLK-------REALCH--NGTCEDFGNSHRCHC 135
D C+ +PCQN G C + ++C+C G + LC NG C+ F + +
Sbjct: 4 DQCETSPCQNQGKCKXGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSV 63
Query: 136 IC 137
+C
Sbjct: 64 VC 65
>pdb|1X7A|L Chain L, Porcine Factor Ixa Complexed To 1-{3-[amino(Imino)
Methyl]phenyl}-N-[4-(1h-Benzimidazol-1-Yl)-2-
Fluorophenyl]-
3-(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide
Length = 146
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 28/41 (68%)
Query: 44 IEINECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNV 84
++ ++CE +PC NG C+D I Y C C GF+G+NCEL+
Sbjct: 46 VDGDQCEPNPCLNGGLCKDDINSYECWCQVGFEGKNCELDA 86
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 7/50 (14%)
Query: 85 DDCKPNPCQNGGICHDLINHFSCSCPSGL-----KREALCH--NGTCEDF 127
D C+PNPC NGG+C D IN + C C G + +A C+ NG C+ F
Sbjct: 49 DQCEPNPCLNGGLCKDDINSYECWCQVGFEGKNCELDATCNIKNGRCKQF 98
Score = 25.8 bits (55), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 12/86 (13%)
Query: 20 GTCEDFGNSHRCHCMEGYTG------SYCSIEINECESDPCQNGATCQDLIGGYSCQCAR 73
G C+D NS+ C C G+ G + C+I+ C+ C+ GA + L C C
Sbjct: 60 GLCKDDINSYECWCQVGFEGKNCELDATCNIKNGRCKQF-CKTGADSKVL-----CSCTT 113
Query: 74 GFQGQNCELNVDDCKPNPCQNGGICH 99
G++ + + P PC + H
Sbjct: 114 GYRLAPDQKSCKPAVPFPCGRVSVSH 139
>pdb|2RQZ|A Chain A, Structure Of Sugar Modified Epidermal Growth Factor-Like
Repeat 12 Of Mouse Notch-1 Receptor
pdb|2RR0|A Chain A, Structure Of Epidermal Growth Factor-Like Repeat 12 Of
Mouse Notch-1 Receptor
pdb|2RR2|A Chain A, Structure Of O-Fucosylated Epidermal Growth Factor-Like
Repeat 12 Of Mouse Notch-1 Receptor
Length = 38
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 27/38 (71%)
Query: 45 EINECESDPCQNGATCQDLIGGYSCQCARGFQGQNCEL 82
++NEC S+PCQN ATC D IG + C C G++G CE+
Sbjct: 1 DVNECISNPCQNDATCLDQIGEFQCICMPGYEGVYCEI 38
Score = 31.6 bits (70), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 83 NVDDCKPNPCQNGGICHDLINHFSCSCPSGLK 114
+V++C NPCQN C D I F C C G +
Sbjct: 1 DVNECISNPCQNDATCLDQIGEFQCICMPGYE 32
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 18 HNGTCEDFGNSHRCHCMEGYTGSYCSI 44
++ TC D +C CM GY G YC I
Sbjct: 12 NDATCLDQIGEFQCICMPGYEGVYCEI 38
>pdb|1APO|A Chain A, Three-Dimensional Structure Of The Apo Form Of The N-
Terminal Egf-Like Module Of Blood Coagulation Factor X
As Determined By Nmr Spectroscopy And Simulated Folding
Length = 42
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 26/38 (68%)
Query: 47 NECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNV 84
++CE PC N C+D IG Y+C CA GF+G+NCE +
Sbjct: 4 DQCEGHPCLNQGHCKDGIGDYTCTCAEGFEGKNCEFST 41
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 85 DDCKPNPCQNGGICHDLINHFSCSCPSGLK 114
D C+ +PC N G C D I ++C+C G +
Sbjct: 4 DQCEGHPCLNQGHCKDGIGDYTCTCAEGFE 33
>pdb|1F7E|A Chain A, The First Egf-Like Domain From Human Blood Coagulation
Fvii, Nmr, 20 Structures
pdb|1F7M|A Chain A, The First Egf-Like Domain From Human Blood Coagulation
Fvii, Nmr, Minimized Average Structure
pdb|1FF7|A Chain A, The First Egf-Like Domain From Human Blood Coagulation
Fvii (Fucosylated At Ser-60), Nmr, 20 Structures
pdb|1FFM|A Chain A, The First Egf-Like Domain From Human Blood Coagulation
Fvii (Fucosylated At Ser-60), Nmr, Minimized Average
Structure
Length = 46
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 27/40 (67%)
Query: 47 NECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDD 86
++C S PCQNG +C+D + Y C C F+G+NCE + DD
Sbjct: 4 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 43
Score = 28.9 bits (63), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 85 DDCKPNPCQNGGICHDLINHFSCSC 109
D C +PCQNGG C D + + C C
Sbjct: 4 DQCASSPCQNGGSCKDQLQSYICFC 28
>pdb|1PFX|L Chain L, Porcine Factor Ixa
Length = 146
Score = 43.1 bits (100), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 27/41 (65%)
Query: 44 IEINECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNV 84
++ ++CE +PC NG C+ I Y C C GF+G+NCEL+
Sbjct: 46 VDGDQCEPNPCLNGGLCKXDINSYECWCQVGFEGKNCELDA 86
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 7/50 (14%)
Query: 85 DDCKPNPCQNGGICHDLINHFSCSCPSGL-----KREALCH--NGTCEDF 127
D C+PNPC NGG+C IN + C C G + +A C+ NG C+ F
Sbjct: 49 DQCEPNPCLNGGLCKXDINSYECWCQVGFEGKNCELDATCNIKNGRCKQF 98
>pdb|1EMN|A Chain A, Nmr Study Of A Pair Of Fibrillin Ca2+ Binding Epidermal
Growth Factor-Like Domains, Minimized Average Structure
pdb|1EMO|A Chain A, Nmr Study Of A Pair Of Fibrillin Ca2+ Binding Epidermal
Growth Factor-Like Domains, 22 Structures
Length = 82
Score = 43.1 bits (100), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 5/68 (7%)
Query: 12 KREALCHNGTCEDFGNSHRCHCMEGY--TGSYCSIEINECE-SDPCQNGATCQDLIGGYS 68
K +C +G C + S+RC C GY G+ C ++ +EC +PC NG TC+++IGG+
Sbjct: 9 KEPDVCKHGQCINTDGSYRCECPFGYILAGNEC-VDTDECSVGNPCGNG-TCKNVIGGFE 66
Query: 69 CQCARGFQ 76
C C GF+
Sbjct: 67 CTCEEGFE 74
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 7/80 (8%)
Query: 43 SIEINEC-ESDPCQNGATCQDLIGGYSCQCARGF--QGQNCELNVDDCKP-NPCQNGGIC 98
+++++EC E D C++G C + G Y C+C G+ G C ++ D+C NPC NG C
Sbjct: 2 AVDMDECKEPDVCKHGQ-CINTDGSYRCECPFGYILAGNEC-VDTDECSVGNPCGNG-TC 58
Query: 99 HDLINHFSCSCPSGLKREAL 118
++I F C+C G + +
Sbjct: 59 KNVIGGFECTCEEGFEPGPM 78
>pdb|1WHE|A Chain A, Coagulation Factor, Nmr, 20 Structures
pdb|1WHF|A Chain A, Coagulation Factor, Nmr, 15 Structures
Length = 86
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 25/38 (65%)
Query: 47 NECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNV 84
++CE PC N C+ IG Y+C CA GF+G+NCE +
Sbjct: 48 DQCEGHPCLNQGHCKXGIGDYTCTCAEGFEGKNCEFST 85
Score = 26.6 bits (57), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 85 DDCKPNPCQNGGICHDLINHFSCSCPSGLK 114
D C+ +PC N G C I ++C+C G +
Sbjct: 48 DQCEGHPCLNQGHCKXGIGDYTCTCAEGFE 77
>pdb|1CCF|A Chain A, How An Epidermal Growth Factor (Egf)-Like Domain Binds
Calcium-High Resolution Nmr Structure Of The Calcium
Form Of The Nh2-Terminal Egf-Like Domain In Coagulation
Factor X
Length = 42
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 25/38 (65%)
Query: 47 NECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNV 84
++CE PC N C+ IG Y+C CA GF+G+NCE +
Sbjct: 4 DQCEGHPCLNQGHCKXGIGDYTCTCAEGFEGKNCEFST 41
Score = 26.2 bits (56), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 85 DDCKPNPCQNGGICHDLINHFSCSCPSGLK 114
D C+ +PC N G C I ++C+C G +
Sbjct: 4 DQCEGHPCLNQGHCKXGIGDYTCTCAEGFE 33
>pdb|1BF9|A Chain A, N-Terminal Egf-Like Domain From Human Factor Vii, Nmr,
23 Structures
Length = 41
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 47 NECESDPCQNGATCQDLIGGYSCQCARGFQGQNCE 81
++C S PCQNG +C+D + Y C C F+G+NCE
Sbjct: 4 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCE 38
Score = 29.3 bits (64), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 85 DDCKPNPCQNGGICHDLINHFSCSC 109
D C +PCQNGG C D + + C C
Sbjct: 4 DQCASSPCQNGGSCKDQLQSYICFC 28
>pdb|1PXX|A Chain A, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1PXX|B Chain B, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1PXX|C Chain C, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1PXX|D Chain D, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|4FM5|A Chain A, X-Ray Structure Of Des-Methylflurbiprofen Bound To
Murine Cox-2
pdb|4FM5|B Chain B, X-Ray Structure Of Des-Methylflurbiprofen Bound To
Murine Cox-2
pdb|4FM5|C Chain C, X-Ray Structure Of Des-Methylflurbiprofen Bound To
Murine Cox-2
pdb|4FM5|D Chain D, X-Ray Structure Of Des-Methylflurbiprofen Bound To
Murine Cox-2
Length = 604
Score = 38.5 bits (88), Expect = 0.001, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 47 NECESDPCQNGATCQDL-IGGYSCQCAR-GFQGQNC 80
N C S+PCQN C Y C C R GF G+NC
Sbjct: 19 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 54
Score = 26.9 bits (58), Expect = 4.1, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 87 CKPNPCQNGGICHDL-INHFSCSC 109
C NPCQN G C + + C C
Sbjct: 21 CCSNPCQNRGECMSTGFDQYKCDC 44
>pdb|1DDX|A Chain A, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site
Of Cox-2: Prostaglandin Structure
pdb|1DDX|B Chain B, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site
Of Cox-2: Prostaglandin Structure
pdb|1DDX|C Chain C, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site
Of Cox-2: Prostaglandin Structure
pdb|1DDX|D Chain D, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site
Of Cox-2: Prostaglandin Structure
pdb|3NTG|A Chain A, Crystal Structure Of Cox-2 With Selective Compound
23d-(R)
pdb|3NTG|B Chain B, Crystal Structure Of Cox-2 With Selective Compound
23d-(R)
pdb|3NTG|C Chain C, Crystal Structure Of Cox-2 With Selective Compound
23d-(R)
pdb|3NTG|D Chain D, Crystal Structure Of Cox-2 With Selective Compound
23d-(R)
Length = 552
Score = 38.5 bits (88), Expect = 0.001, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 47 NECESDPCQNGATCQDL-IGGYSCQCAR-GFQGQNC 80
N C S+PCQN C Y C C R GF G+NC
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 37
Score = 26.9 bits (58), Expect = 4.1, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 87 CKPNPCQNGGICHDL-INHFSCSC 109
C NPCQN G C + + C C
Sbjct: 4 CCSNPCQNRGECMSTGFDQYKCDC 27
>pdb|1CVU|A Chain A, Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1CVU|B Chain B, Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Active Site Of Cox-2
Length = 552
Score = 38.5 bits (88), Expect = 0.001, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 47 NECESDPCQNGATCQDL-IGGYSCQCAR-GFQGQNC 80
N C S+PCQN C Y C C R GF G+NC
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 37
Score = 26.9 bits (58), Expect = 4.1, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 87 CKPNPCQNGGICHDL-INHFSCSC 109
C NPCQN G C + + C C
Sbjct: 4 CCSNPCQNRGECMSTGFDQYKCDC 27
>pdb|3RR3|A Chain A, Structure Of (R)-Flurbiprofen Bound To Mcox-2
pdb|3RR3|B Chain B, Structure Of (R)-Flurbiprofen Bound To Mcox-2
pdb|3RR3|C Chain C, Structure Of (R)-Flurbiprofen Bound To Mcox-2
pdb|3RR3|D Chain D, Structure Of (R)-Flurbiprofen Bound To Mcox-2
Length = 560
Score = 38.5 bits (88), Expect = 0.001, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 47 NECESDPCQNGATCQDL-IGGYSCQCAR-GFQGQNC 80
N C S+PCQN C Y C C R GF G+NC
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 37
Score = 26.9 bits (58), Expect = 4.1, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 87 CKPNPCQNGGICHDL-INHFSCSC 109
C NPCQN G C + + C C
Sbjct: 4 CCSNPCQNRGECMSTGFDQYKCDC 27
>pdb|3NT1|A Chain A, High Resolution Structure Of Naproxen:cox-2 Complex.
pdb|3NT1|B Chain B, High Resolution Structure Of Naproxen:cox-2 Complex.
pdb|3NTB|A Chain A, Structure Of 6-Methylthio Naproxen Analog Bound To
Mcox-2.
pdb|3NTB|B Chain B, Structure Of 6-Methylthio Naproxen Analog Bound To
Mcox-2.
pdb|3NTB|C Chain C, Structure Of 6-Methylthio Naproxen Analog Bound To
Mcox-2.
pdb|3NTB|D Chain D, Structure Of 6-Methylthio Naproxen Analog Bound To
Mcox-2.
pdb|3LN0|A Chain A, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN0|B Chain B, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN0|C Chain C, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN0|D Chain D, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN1|A Chain A, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3LN1|B Chain B, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3LN1|C Chain C, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3LN1|D Chain D, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3MQE|A Chain A, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3MQE|B Chain B, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3MQE|C Chain C, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3MQE|D Chain D, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3Q7D|A Chain A, Structure Of (R)-Naproxen Bound To Mcox-2.
pdb|3Q7D|B Chain B, Structure Of (R)-Naproxen Bound To Mcox-2
Length = 587
Score = 38.5 bits (88), Expect = 0.001, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 47 NECESDPCQNGATCQDL-IGGYSCQCAR-GFQGQNC 80
N C S+PCQN C Y C C R GF G+NC
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 37
Score = 26.9 bits (58), Expect = 4.1, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 87 CKPNPCQNGGICHDL-INHFSCSC 109
C NPCQN G C + + C C
Sbjct: 4 CCSNPCQNRGECMSTGFDQYKCDC 27
>pdb|3PGH|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed
With A Non- Selective Inhibitor, Flurbiprofen
pdb|3PGH|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed
With A Non- Selective Inhibitor, Flurbiprofen
pdb|3PGH|C Chain C, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed
With A Non- Selective Inhibitor, Flurbiprofen
pdb|3PGH|D Chain D, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed
With A Non- Selective Inhibitor, Flurbiprofen
pdb|4COX|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed
With A Non- Selective Inhibitor, Indomethacin
pdb|4COX|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed
With A Non- Selective Inhibitor, Indomethacin
pdb|4COX|C Chain C, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed
With A Non- Selective Inhibitor, Indomethacin
pdb|4COX|D Chain D, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed
With A Non- Selective Inhibitor, Indomethacin
pdb|5COX|A Chain A, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|5COX|B Chain B, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|5COX|C Chain C, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|5COX|D Chain D, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|6COX|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed
With A Selective Inhibitor, Sc-558 In I222 Space Group
pdb|6COX|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed
With A Selective Inhibitor, Sc-558 In I222 Space Group
pdb|1CX2|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed
With A Selective Inhibitor, Sc-558
pdb|1CX2|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed
With A Selective Inhibitor, Sc-558
pdb|1CX2|C Chain C, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed
With A Selective Inhibitor, Sc-558
pdb|1CX2|D Chain D, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed
With A Selective Inhibitor, Sc-558
Length = 587
Score = 38.5 bits (88), Expect = 0.001, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 47 NECESDPCQNGATCQDL-IGGYSCQCAR-GFQGQNC 80
N C S+PCQN C Y C C R GF G+NC
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 37
Score = 26.9 bits (58), Expect = 4.1, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 87 CKPNPCQNGGICHDL-INHFSCSC 109
C NPCQN G C + + C C
Sbjct: 4 CCSNPCQNRGECMSTGFDQYKCDC 27
>pdb|2YGQ|A Chain A, Wif Domain-Epidermal Growth Factor (Egf)-Like Domains 1-3
Of Human Wnt Inhibitory Factor 1 In Complex With
1,2-Dipalmitoylphosphatidylcholine
Length = 324
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 30 RCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDDCKP 89
+C C G G C EI++C PC+NG C IG C+C++G+QG C V C+P
Sbjct: 230 KCICPPGLEGEQC--EISKC-PQPCRNGGKC---IGKSKCKCSKGYQGDLCSKPV--CEP 281
Query: 90 NPCQNGGICHD 100
C G CH+
Sbjct: 282 G-CGAHGTCHE 291
Score = 29.3 bits (64), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 9/60 (15%)
Query: 54 CQNGATCQDLIGGYSCQCARGFQGQNCELNVDDCKPNPCQNGGICHDLINHFSCSCPSGL 113
C+NG C + C+C GF G +CE + C P C NGG+C + C CP G
Sbjct: 155 CRNGGFCNER---RICECPDGFHGPHCEKAL--CTPR-CMNGGLC---VTPGFCICPPGF 205
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 45/101 (44%), Gaps = 16/101 (15%)
Query: 17 CHNGTCEDFGNSHR-CHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGF 75
C NG F N R C C +G+ G +C + + C NG C + G+ C C GF
Sbjct: 155 CRNG---GFCNERRICECPDGFHGPHCEKALC---TPRCMNGGLC--VTPGF-CICPPGF 205
Query: 76 QGQNCELNVDDCKPNPCQNGGICHDLINHFSCSCPSGLKRE 116
G NC+ +C C NGG C C CP GL+ E
Sbjct: 206 YGVNCDK--ANCS-TTCFNGGTC---FYPGKCICPPGLEGE 240
>pdb|3TZI|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of G533v Murine Cox-2
pdb|3TZI|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of G533v Murine Cox-2
Length = 593
Score = 36.6 bits (83), Expect = 0.005, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 49 CESDPCQNGATCQDL-IGGYSCQCAR-GFQGQNC 80
C S+PCQN C Y C C R GF G+NC
Sbjct: 10 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 43
Score = 26.9 bits (58), Expect = 4.1, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 87 CKPNPCQNGGICHDL-INHFSCSC 109
C NPCQN G C + + C C
Sbjct: 10 CCSNPCQNRGECMSTGFDQYKCDC 33
>pdb|3QH0|A Chain A, X-Ray Crystal Structure Of Palmitic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3QH0|B Chain B, X-Ray Crystal Structure Of Palmitic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3QMO|A Chain A, X-Ray Crystal Structure Of Ns-398 Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3QMO|B Chain B, X-Ray Crystal Structure Of Ns-398 Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|4E1G|A Chain A, X-Ray Crystal Structure Of Alpha-Linolenic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|4E1G|B Chain B, X-Ray Crystal Structure Of Alpha-Linolenic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
Length = 610
Score = 36.6 bits (83), Expect = 0.005, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 49 CESDPCQNGATCQDL-IGGYSCQCAR-GFQGQNC 80
C S+PCQN C Y C C R GF G+NC
Sbjct: 27 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 60
Score = 27.7 bits (60), Expect = 2.6, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 76 QGQNCELNVDDCKPNPCQNGGICHDL-INHFSCSC 109
Q N + C NPCQN G C + + C C
Sbjct: 16 QAANHHHHHHPCCSNPCQNRGECMSTGFDQYKCDC 50
>pdb|3OLT|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of R513h Murine Cox-2
pdb|3OLT|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of R513h Murine Cox-2
pdb|3OLU|A Chain A, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of R513h Murine Cox-2
pdb|3OLU|B Chain B, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of R513h Murine Cox-2
Length = 592
Score = 36.6 bits (83), Expect = 0.005, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 49 CESDPCQNGATCQDL-IGGYSCQCAR-GFQGQNC 80
C S+PCQN C Y C C R GF G+NC
Sbjct: 9 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 42
Score = 26.9 bits (58), Expect = 4.1, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 87 CKPNPCQNGGICHDL-INHFSCSC 109
C NPCQN G C + + C C
Sbjct: 9 CCSNPCQNRGECMSTGFDQYKCDC 32
>pdb|3MDL|A Chain A, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3MDL|B Chain B, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of Cyclooxygenase-2
Length = 587
Score = 36.6 bits (83), Expect = 0.005, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 49 CESDPCQNGATCQDL-IGGYSCQCAR-GFQGQNC 80
C S+PCQN C Y C C R GF G+NC
Sbjct: 9 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 42
Score = 26.9 bits (58), Expect = 4.1, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 87 CKPNPCQNGGICHDL-INHFSCSC 109
C NPCQN G C + + C C
Sbjct: 9 CCSNPCQNRGECMSTGFDQYKCDC 32
>pdb|3KRK|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of L531f Murine Cox-2
pdb|3KRK|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of L531f Murine Cox-2
Length = 591
Score = 36.6 bits (83), Expect = 0.005, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 49 CESDPCQNGATCQDL-IGGYSCQCAR-GFQGQNC 80
C S+PCQN C Y C C R GF G+NC
Sbjct: 8 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 41
Score = 26.9 bits (58), Expect = 4.1, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 87 CKPNPCQNGGICHDL-INHFSCSC 109
C NPCQN G C + + C C
Sbjct: 8 CCSNPCQNRGECMSTGFDQYKCDC 31
>pdb|3HS5|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS5|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS6|A Chain A, X-Ray Crystal Structure Of Eicosapentaenoic Acid Bound
To The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS6|B Chain B, X-Ray Crystal Structure Of Eicosapentaenoic Acid Bound
To The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS7|A Chain A, X-Ray Crystal Structure Of Docosahexaenoic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS7|B Chain B, X-Ray Crystal Structure Of Docosahexaenoic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
Length = 591
Score = 36.6 bits (83), Expect = 0.005, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 49 CESDPCQNGATCQDL-IGGYSCQCAR-GFQGQNC 80
C S+PCQN C Y C C R GF G+NC
Sbjct: 8 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 41
Score = 26.9 bits (58), Expect = 4.1, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 87 CKPNPCQNGGICHDL-INHFSCSC 109
C NPCQN G C + + C C
Sbjct: 8 CCSNPCQNRGECMSTGFDQYKCDC 31
>pdb|1LMJ|A Chain A, Nmr Study Of The Fibrillin-1 Cbegf12-13 Pair Of Ca2+
Binding Epidermal Growth Factor-like Domains
Length = 86
Score = 36.2 bits (82), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Query: 16 LCHNGTCEDFGNSHRCHCMEGYTGSYCS----IEINECESDPCQ-NGATCQDLIGGYSCQ 70
LC G C + C C EGY + ++I+EC+ DP G C + G Y C+
Sbjct: 12 LCGRGQCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLLCRGGVCHNTEGSYRCE 71
Query: 71 CARGFQ 76
C G Q
Sbjct: 72 CPPGHQ 77
Score = 35.8 bits (81), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 8/75 (10%)
Query: 45 EINECESDPCQNG-ATCQDLIGGYSCQCARGFQG-----QNCELNVDDCKPNPCQ-NGGI 97
+I+EC P G C + G + C+C G++ +NC +++D+C+ +P GG+
Sbjct: 2 DIDECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNC-MDIDECQRDPLLCRGGV 60
Query: 98 CHDLINHFSCSCPSG 112
CH+ + C CP G
Sbjct: 61 CHNTEGSYRCECPPG 75
>pdb|1TPG|A Chain A, F1-G Module Pair Residues 1-91 (C83s) Of Tissue-Type
Plasminogen Activator (T-Pa) (Nmr, 298k, Ph2.95,
Representative Structure)
Length = 91
Score = 35.4 bits (80), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 43 SIEINECESDPCQNGATCQDLI--GGYSCQCARGFQGQNCELNV 84
S+ + C C NG TCQ + + CQC GF G++CE++
Sbjct: 45 SVPVKSCSEPRCFNGGTCQQALYFSDFVCQCPEGFAGKSCEIDT 88
>pdb|2VJ2|A Chain A, Human Jagged-1, Domains Dsl And Egfs1-3
pdb|2VJ2|B Chain B, Human Jagged-1, Domains Dsl And Egfs1-3
Length = 169
Score = 34.7 bits (78), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 30 RCHCMEGYTGSYCSIEINECES-DPCQNGATCQDL-IGGYSCQCARGFQGQNCEL 82
+C C + G C ++N C + PC NG TC + Y C C G+ G NCE+
Sbjct: 115 QCLCETNWGGQLCDKDLNYCGTHQPCLNGGTCSNTGPDKYQCSCPEGYSGPNCEI 169
Score = 31.6 bits (70), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%)
Query: 31 CHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDDCKPN 90
C C G+ G YC ++C P C + + C C + GQ C+ +++ C +
Sbjct: 85 CRCQYGWQGLYC----DKCIPHPGCVHGICNEP---WQCLCETNWGGQLCDKDLNYCGTH 137
Query: 91 -PCQNGGICHDL-INHFSCSCPSGL 113
PC NGG C + + + CSCP G
Sbjct: 138 QPCLNGGTCSNTGPDKYQCSCPEGY 162
>pdb|3P5C|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 440
Score = 33.1 bits (74), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 21 TCEDFGNSHRCHCMEGY--TGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQ 76
C D + C C +G+ +I+EC+ DP C +L GGY CQC GFQ
Sbjct: 53 VCNDLKIGYECLCPDGFQLVAQRRCEDIDECQ-DPDTCSQLCVNLEGGYKCQCEEGFQ 109
Score = 32.7 bits (73), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 14/93 (15%)
Query: 46 INECESDPC--QNGA---TCQDLIGGYSCQCARGFQ---GQNCELNVDDCK-PNPCQNGG 96
I EC ++ C NG C DL GY C C GFQ + CE ++D+C+ P+ C
Sbjct: 35 IKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCE-DIDECQDPDTCSQ-- 91
Query: 97 ICHDLINHFSCSCPSGLKREALCHNGTCEDFGN 129
+C +L + C C G + + H C+ G+
Sbjct: 92 LCVNLEGGYKCQCEEGFQLDP--HTKACKAVGS 122
>pdb|3M0C|C Chain C, The X-Ray Crystal Structure Of Pcsk9 In Complex With The
Ldl Receptor
Length = 791
Score = 33.1 bits (74), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 21 TCEDFGNSHRCHCMEGY--TGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQ 76
C D + C C +G+ +I+EC+ DP C +L GGY CQC GFQ
Sbjct: 325 VCNDLKIGYECLCPDGFQLVAQRRCEDIDECQ-DPDTCSQLCVNLEGGYKCQCEEGFQ 381
Score = 32.7 bits (73), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 14/93 (15%)
Query: 46 INECESDPC--QNGA---TCQDLIGGYSCQCARGFQ---GQNCELNVDDCK-PNPCQNGG 96
I EC ++ C NG C DL GY C C GFQ + CE ++D+C+ P+ C
Sbjct: 307 IKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCE-DIDECQDPDTCSQ-- 363
Query: 97 ICHDLINHFSCSCPSGLKREALCHNGTCEDFGN 129
+C +L + C C G + + H C+ G+
Sbjct: 364 LCVNLEGGYKCQCEEGFQLDP--HTKACKAVGS 394
>pdb|1N7D|A Chain A, Extracellular Domain Of The Ldl Receptor
Length = 699
Score = 33.1 bits (74), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 21 TCEDFGNSHRCHCMEGY--TGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQ 76
C D + C C +G+ +I+EC+ DP C +L GGY CQC GFQ
Sbjct: 307 VCNDLKIGYECLCPDGFQLVAQRRCEDIDECQ-DPDTCSQLCVNLEGGYKCQCEEGFQ 363
Score = 32.3 bits (72), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 14/93 (15%)
Query: 46 INECESDPC--QNGA---TCQDLIGGYSCQCARGFQ---GQNCELNVDDCK-PNPCQNGG 96
I EC ++ C NG C DL GY C C GFQ + CE ++D+C+ P+ C
Sbjct: 289 IKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCE-DIDECQDPDTCSQ-- 345
Query: 97 ICHDLINHFSCSCPSGLKREALCHNGTCEDFGN 129
+C +L + C C G + + H C+ G+
Sbjct: 346 LCVNLEGGYKCQCEEGFQLDP--HTKACKAVGS 376
>pdb|3P5B|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 400
Score = 33.1 bits (74), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Query: 21 TCEDFGNSHRCHCMEGY---TGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQ 76
C D + C C +G+ C +I+EC+ DP C +L GGY CQC GFQ
Sbjct: 13 VCNDLKIGYECLCPDGFQLVAQRRCE-DIDECQ-DPDTCSQLCVNLEGGYKCQCEEGFQ 69
Score = 31.6 bits (70), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 9/75 (12%)
Query: 59 TCQDLIGGYSCQCARGFQ---GQNCELNVDDCK-PNPCQNGGICHDLINHFSCSCPSGLK 114
C DL GY C C GFQ + CE ++D+C+ P+ C +C +L + C C G +
Sbjct: 13 VCNDLKIGYECLCPDGFQLVAQRRCE-DIDECQDPDTCSQ--LCVNLEGGYKCQCEEGFQ 69
Query: 115 REALCHNGTCEDFGN 129
+ H C+ G+
Sbjct: 70 LDP--HTKACKAVGS 82
>pdb|2W2M|E Chain E, Wt Pcsk9-Deltac Bound To Wt Egf-A Of Ldlr
pdb|2W2O|E Chain E, Pcsk9-deltac D374y Mutant Bound To Wt Egf-a Of Ldlr
pdb|2W2P|E Chain E, Pcsk9-Deltac D374a Mutant Bound To Wt Egf-A Of Ldlr
pdb|2W2Q|E Chain E, Pcsk9-Deltac D374h Mutant Bound To Wt Egf-A Of Ldlr
Length = 107
Score = 32.7 bits (73), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 35/81 (43%), Gaps = 7/81 (8%)
Query: 2 RNLIVSSPGLKREALCHNG----TCEDFGNSHRCHCMEGY--TGSYCSIEINECESDPCQ 55
NL E L +NG C D + C C +G+ +I+EC+ DP
Sbjct: 19 ENLYFQGAMGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQ-DPDT 77
Query: 56 NGATCQDLIGGYSCQCARGFQ 76
C +L GGY CQC GFQ
Sbjct: 78 CSQLCVNLEGGYKCQCEEGFQ 98
Score = 29.6 bits (65), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Query: 59 TCQDLIGGYSCQCARGFQ---GQNCELNVDDCK-PNPCQNGGICHDLINHFSCSCPSGLK 114
C DL GY C C GFQ + CE ++D+C+ P+ C +C +L + C C G +
Sbjct: 42 VCNDLKIGYECLCPDGFQLVAQRRCE-DIDECQDPDTCSQ--LCVNLEGGYKCQCEEGFQ 98
Query: 115 REA 117
+
Sbjct: 99 LDP 101
>pdb|2W2N|E Chain E, Wt Pcsk9-Deltac Bound To Egf-A H306y Mutant Of Ldlr
Length = 107
Score = 32.7 bits (73), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 35/81 (43%), Gaps = 7/81 (8%)
Query: 2 RNLIVSSPGLKREALCHNG----TCEDFGNSHRCHCMEGY--TGSYCSIEINECESDPCQ 55
NL E L +NG C D + C C +G+ +I+EC+ DP
Sbjct: 19 ENLYFQGAMGTNECLDNNGGCSYVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQ-DPDT 77
Query: 56 NGATCQDLIGGYSCQCARGFQ 76
C +L GGY CQC GFQ
Sbjct: 78 CSQLCVNLEGGYKCQCEEGFQ 98
Score = 29.6 bits (65), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Query: 59 TCQDLIGGYSCQCARGFQ---GQNCELNVDDCK-PNPCQNGGICHDLINHFSCSCPSGLK 114
C DL GY C C GFQ + CE ++D+C+ P+ C +C +L + C C G +
Sbjct: 42 VCNDLKIGYECLCPDGFQLVAQRRCE-DIDECQDPDTCSQ--LCVNLEGGYKCQCEEGFQ 98
Query: 115 REA 117
+
Sbjct: 99 LDP 101
>pdb|1HZ8|A Chain A, Solution Structure And Backbone Dynamics Of A Concatemer
Of Egf-Homology Modules Of The Human Low Density
Lipoprotein Receptor
pdb|1I0U|A Chain A, Solution Structure And Backbone Dynamics Of A Concatemer
Of Egf-Homology Modules Of The Human Low Density
Lipoprotein Receptor
Length = 82
Score = 32.7 bits (73), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 21 TCEDFGNSHRCHCMEGY--TGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQ 76
C D + C C +G+ +I+EC+ DP C +L GGY CQC GFQ
Sbjct: 15 VCNDLKIGYECLCPDGFQLVAQRRCEDIDECQ-DPDTCSQLCVNLEGGYKCQCEEGFQ 71
Score = 29.3 bits (64), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Query: 59 TCQDLIGGYSCQCARGFQ---GQNCELNVDDCK-PNPCQNGGICHDLINHFSCSCPSGLK 114
C DL GY C C GFQ + CE ++D+C+ P+ C +C +L + C C G +
Sbjct: 15 VCNDLKIGYECLCPDGFQLVAQRRCE-DIDECQDPDTCSQ--LCVNLEGGYKCQCEEGFQ 71
Query: 115 RE 116
+
Sbjct: 72 LD 73
>pdb|1HJ7|A Chain A, Nmr Study Of A Pair Of Ldl Receptor Ca2+ Binding
Epidermal Growth Factor-Like Domains, 20 Structures
Length = 80
Score = 32.7 bits (73), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 21 TCEDFGNSHRCHCMEGY--TGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQ 76
C D + C C +G+ +I+EC+ DP C +L GGY CQC GFQ
Sbjct: 15 VCNDLKIGYECLCPDGFQLVAQRRCEDIDECQ-DPDTCSQLCVNLEGGYKCQCEEGFQ 71
Score = 29.3 bits (64), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Query: 59 TCQDLIGGYSCQCARGFQ---GQNCELNVDDCK-PNPCQNGGICHDLINHFSCSCPSGLK 114
C DL GY C C GFQ + CE ++D+C+ P+ C +C +L + C C G +
Sbjct: 15 VCNDLKIGYECLCPDGFQLVAQRRCE-DIDECQDPDTCSQ--LCVNLEGGYKCQCEEGFQ 71
Query: 115 REA 117
+
Sbjct: 72 LDP 74
>pdb|3BPS|E Chain E, Pcsk9:egf-a Complex
pdb|3GCX|E Chain E, Pcsk9:egfa (Ph 7.4)
Length = 83
Score = 32.3 bits (72), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 21 TCEDFGNSHRCHCMEGY--TGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQ 76
C D + C C +G+ +I+EC+ DP C +L GGY CQC GFQ
Sbjct: 18 VCNDLKIGYECLCPDGFQLVAQRRCEDIDECQ-DPDTCSQLCVNLEGGYKCQCEEGFQ 74
Score = 29.6 bits (65), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Query: 59 TCQDLIGGYSCQCARGFQ---GQNCELNVDDCK-PNPCQNGGICHDLINHFSCSCPSGLK 114
C DL GY C C GFQ + CE ++D+C+ P+ C +C +L + C C G +
Sbjct: 18 VCNDLKIGYECLCPDGFQLVAQRRCE-DIDECQDPDTCSQ--LCVNLEGGYKCQCEEGFQ 74
Query: 115 RE 116
+
Sbjct: 75 LD 76
>pdb|3GCW|E Chain E, Pcsk9:egfa(H306y)
Length = 83
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 21 TCEDFGNSHRCHCMEGY--TGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQ 76
C D + C C +G+ +I+EC+ DP C +L GGY CQC GFQ
Sbjct: 18 VCNDLKIGYECLCPDGFQLVAQRRCEDIDECQ-DPDTCSQLCVNLEGGYKCQCEEGFQ 74
Score = 29.6 bits (65), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Query: 59 TCQDLIGGYSCQCARGFQ---GQNCELNVDDCK-PNPCQNGGICHDLINHFSCSCPSGLK 114
C DL GY C C GFQ + CE ++D+C+ P+ C +C +L + C C G +
Sbjct: 18 VCNDLKIGYECLCPDGFQLVAQRRCE-DIDECQDPDTCSQ--LCVNLEGGYKCQCEEGFQ 74
Query: 115 RE 116
+
Sbjct: 75 LD 76
>pdb|1G1Q|A Chain A, Crystal Structure Of P-Selectin LectinEGF DOMAINS
pdb|1G1Q|B Chain B, Crystal Structure Of P-Selectin LectinEGF DOMAINS
pdb|1G1Q|C Chain C, Crystal Structure Of P-Selectin LectinEGF DOMAINS
pdb|1G1Q|D Chain D, Crystal Structure Of P-Selectin LectinEGF DOMAINS
pdb|1G1R|A Chain A, Crystal Structure Of P-Selectin LectinEGF DOMAINS
Complexed With Slex
pdb|1G1R|B Chain B, Crystal Structure Of P-Selectin LectinEGF DOMAINS
Complexed With Slex
pdb|1G1R|C Chain C, Crystal Structure Of P-Selectin LectinEGF DOMAINS
Complexed With Slex
pdb|1G1R|D Chain D, Crystal Structure Of P-Selectin LectinEGF DOMAINS
Complexed With Slex
pdb|1G1S|A Chain A, P-selectin Lectin/egf Domains Complexed With Psgl-1
Peptide
pdb|1G1S|B Chain B, P-selectin Lectin/egf Domains Complexed With Psgl-1
Peptide
Length = 162
Score = 32.0 bits (71), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 18/38 (47%)
Query: 49 CESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDD 86
C+ C C + IG Y+C C GF G CE DD
Sbjct: 122 CQDMSCSKQGECLETIGNYTCSCYPGFYGPECEYVRDD 159
>pdb|3F6U|L Chain L, Crystal Structure Of Human Activated Protein C (Apc)
Complexed With Ppack
Length = 98
Score = 31.2 bits (69), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 17 CHNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGAT--CQDLIGGYSCQCARG 74
C +GTC D S C C G+ G +C E++ G T C + +G C CA G
Sbjct: 16 CGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTHYCLEEVGWRRCSCAPG 75
Query: 75 FQ 76
++
Sbjct: 76 YK 77
Score = 29.6 bits (65), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 8/62 (12%)
Query: 58 ATCQDLIGGYSCQCARGFQGQNC--ELNVDDCKPNPCQNGG---ICHDLINHFSCSCPSG 112
TC D IG +SC C G++G+ C E++ +C + NGG C + + CSC G
Sbjct: 19 GTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLD---NGGCTHYCLEEVGWRRCSCAPG 75
Query: 113 LK 114
K
Sbjct: 76 YK 77
>pdb|2W86|A Chain A, Crystal Structure Of Fibrillin-1 Domains
Cbegf9hyb2cbegf10, Calcium Saturated Form
Length = 147
Score = 30.8 bits (68), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 7/52 (13%)
Query: 71 CARGF---QGQNCELNVDDCK--PNPCQNGGICHDLINHFSCSCPSGLKREA 117
C +G+ +G CE ++D+C+ P C+NG +C + F C CPSG+ +A
Sbjct: 92 CGKGYSRIKGTQCE-DIDECEVFPGVCKNG-LCVNTRGSFKCQCPSGMTLDA 141
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 43 SIEINECESDPCQNGATCQDLIGGYSCQCA 72
S +I+ECES PC NG C++ G + C+C+
Sbjct: 1 SADIDECESSPCINGV-CKNSPGSFICECS 29
>pdb|4AQB|A Chain A, Mbl-Ficolin Associated Protein-1, Map-1 Aka Map44
Length = 361
Score = 30.8 bits (68), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 10/74 (13%)
Query: 5 IVSSPGLKREALCHNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGA---TCQ 61
+V SPG + DF N R G+ Y +++++EC+ + + C
Sbjct: 87 VVLSPG----SFMSITFRSDFSNEER---FTGFDAHYMAVDVDECKEREDEELSCDHYCH 139
Query: 62 DLIGGYSCQCARGF 75
+ IGGY C C G+
Sbjct: 140 NYIGGYYCSCRFGY 153
>pdb|3DEM|A Chain A, Cub1-egf-cub2 Domain Of Human Masp-1/3
pdb|3DEM|B Chain B, Cub1-egf-cub2 Domain Of Human Masp-1/3
Length = 278
Score = 30.8 bits (68), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 10/74 (13%)
Query: 5 IVSSPGLKREALCHNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGA---TCQ 61
+V SPG + DF N R G+ Y +++++EC+ + + C
Sbjct: 87 VVLSPG----SFMSITFRSDFSNEER---FTGFDAHYMAVDVDECKEREDEELSCDHYCH 139
Query: 62 DLIGGYSCQCARGF 75
+ IGGY C C G+
Sbjct: 140 NYIGGYYCSCRFGY 153
>pdb|1NZI|A Chain A, Crystal Structure Of The Cub1-Egf Interaction Domain Of
Complement Protease C1s
pdb|1NZI|B Chain B, Crystal Structure Of The Cub1-Egf Interaction Domain Of
Complement Protease C1s
Length = 159
Score = 30.4 bits (67), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 8/55 (14%)
Query: 24 DFGNSHRCHCMEGYTGSYCSIEINECES---DPCQNGATCQDLIGGYSCQCARGF 75
DF N R G+ Y + +INEC PC + C + IGGY C C +
Sbjct: 98 DFSNEER---FTGFAAYYVATDINECTDFVDVPCSH--FCNNFIGGYFCSCPPEY 147
>pdb|4DG6|A Chain A, Crystal Structure Of Domains 1 And 2 Of Lrp6
Length = 616
Score = 30.0 bits (66), Expect = 0.48, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 11/45 (24%)
Query: 90 NPC--QNGGICHDLINH-----FSCSCPSGLKREALCHNG-TCED 126
NPC NGG H + + C+CP+G+K L NG TC+D
Sbjct: 265 NPCGIDNGGCSHLCLMSPVKPFYQCACPTGVK---LLENGKTCKD 306
>pdb|3S94|A Chain A, Crystal Structure Of Lrp6-E1e2
pdb|3S94|B Chain B, Crystal Structure Of Lrp6-E1e2
Length = 619
Score = 30.0 bits (66), Expect = 0.49, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 11/45 (24%)
Query: 90 NPC--QNGGICHDLINH-----FSCSCPSGLKREALCHNG-TCED 126
NPC NGG H + + C+CP+G+K L NG TC+D
Sbjct: 273 NPCGIDNGGCSHLCLMSPVKPFYQCACPTGVK---LLENGKTCKD 314
>pdb|1Z6C|A Chain A, Solution Structure Of An Egf Pair (Egf34) From Vitamin
K- Dependent Protein S
Length = 87
Score = 30.0 bits (66), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 7/69 (10%)
Query: 13 REALCHNGTCEDFGNSHRCHCMEGYTGSYCSI---EINECESDPCQNGATCQDLIGGYSC 69
+ ++C C++ C C EGY + S +I+EC + C C + GGY+C
Sbjct: 9 KPSICGTAVCKNIPGDFECECPEGYRYNLKSKSCEDIDECSENMC--AQLCVNYPGGYTC 66
Query: 70 QC--ARGFQ 76
C +GF+
Sbjct: 67 YCDGKKGFK 75
>pdb|3R05|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), With
Splice Insert Ss3
pdb|3R05|B Chain B, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), With
Splice Insert Ss3
Length = 1254
Score = 28.9 bits (63), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 16 LCHNGTCEDFGNSHRCHCMEGYTGSYCSIEINE-CESDPCQNGATCQDLIGGYSCQCA-R 73
L +G +D G S CS E + C S+PC+N C+D Y C C+
Sbjct: 589 LFIDGQSKDIRQMAEVQSTAGVKPS-CSRETAKPCLSNPCKNNGMCRDGWNRYVCDCSGT 647
Query: 74 GFQGQNCE 81
G+ G++CE
Sbjct: 648 GYLGRSCE 655
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 12/79 (15%)
Query: 31 CHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDDCKPN 90
H EG+ G S+++N D + C + Q RG CE C+ +
Sbjct: 985 VHAKEGFQGCLASVDLNGRLPDLISDALFC-------NGQIERG-----CEGPSTTCQED 1032
Query: 91 PCQNGGICHDLINHFSCSC 109
C N G+C + FSC C
Sbjct: 1033 SCSNQGVCLQQWDGFSCDC 1051
Score = 27.7 bits (60), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 87 CKPNPCQNGGICHDLINHFSCSC 109
C NPC+N G+C D N + C C
Sbjct: 622 CLSNPCKNNGMCRDGWNRYVCDC 644
>pdb|3QCW|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), No
Splice Inserts
pdb|3QCW|B Chain B, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), No
Splice Inserts
Length = 1245
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 16 LCHNGTCEDFGNSHRCHCMEGYTGSYCSIEINE-CESDPCQNGATCQDLIGGYSCQCA-R 73
L +G +D G S CS E + C S+PC+N C+D Y C C+
Sbjct: 589 LFIDGQSKDIRQMAEVQSTAGVKPS-CSRETAKPCLSNPCKNNGMCRDGWNRYVCDCSGT 647
Query: 74 GFQGQNCE 81
G+ G++CE
Sbjct: 648 GYLGRSCE 655
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 12/79 (15%)
Query: 31 CHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDDCKPN 90
H EG+ G S+++N D + C + Q RG CE C+ +
Sbjct: 976 VHAKEGFQGCLASVDLNGRLPDLISDALFC-------NGQIERG-----CEGPSTTCQED 1023
Query: 91 PCQNGGICHDLINHFSCSC 109
C N G+C + FSC C
Sbjct: 1024 SCSNQGVCLQQWDGFSCDC 1042
Score = 27.7 bits (60), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 87 CKPNPCQNGGICHDLINHFSCSC 109
C NPC+N G+C D N + C C
Sbjct: 622 CLSNPCKNNGMCRDGWNRYVCDC 644
>pdb|4BDW|A Chain A, The Stucture Of The Fni-egf Tandem Domain Of Coagulation
Factor Xii In Complex With Holmium
pdb|4BDX|A Chain A, The Stucture Of The Fni-egf Tandem Domain Of Coagulation
Factor Xii
Length = 85
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 69 CQCARGFQGQNCELNVDDCKPNPCQNGGICHDLINHFSCSCPSG 112
CQC +G L C+ NPC +GG C ++ H C CP G
Sbjct: 31 CQC-KGPDAHCQRLASQACRTNPCLHGGRCLEVEGHRLCHCPVG 73
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 18 HNGTCEDFGNSHRCHCMEGYTGSYCSIEI 46
H G C + CHC GYTG +C ++
Sbjct: 55 HGGRCLEVEGHRLCHCPVGYTGPFCDVDT 83
Score = 27.3 bits (59), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/41 (26%), Positives = 21/41 (51%)
Query: 44 IEINECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNV 84
+ C ++PC +G C ++ G C C G+ G C+++
Sbjct: 43 LASQACRTNPCLHGGRCLEVEGHRLCHCPVGYTGPFCDVDT 83
>pdb|1AUT|L Chain L, Human Activated Protein C
Length = 114
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 17 CHNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGAT--CQDLIGGYSCQCARG 74
C +GTC S C C G+ G +C E++ G T C + +G C CA G
Sbjct: 23 CGHGTCIXGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTHYCLEEVGWRRCSCAPG 82
Query: 75 FQ 76
++
Sbjct: 83 YK 84
Score = 27.3 bits (59), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Query: 58 ATCQDLIGGYSCQCARGFQGQNC--ELNVDDCKPNPCQNGG---ICHDLINHFSCSCPSG 112
TC IG +SC C G++G+ C E++ +C + NGG C + + CSC G
Sbjct: 26 GTCIXGIGSFSCDCRSGWEGRFCQREVSFLNCSLD---NGGCTHYCLEEVGWRRCSCAPG 82
Query: 113 LK 114
K
Sbjct: 83 YK 84
>pdb|3POY|A Chain A, Crystal Structure Of The Alpha-Neurexin-1 Ectodomain, Lns
2-6
Length = 1019
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 16 LCHNGTCEDFGNSHRCHCMEGYTGSYCSIEINE-CESDPCQNGATCQDLIGGYSCQCA-R 73
L +G +D G S CS E + C S+PC+N C+D Y C C+
Sbjct: 364 LFIDGQSKDIRQMAEVQSTAGVKPS-CSRETAKPCLSNPCKNNGMCRDGWNRYVCDCSGT 422
Query: 74 GFQGQNCE 81
G+ G++CE
Sbjct: 423 GYLGRSCE 430
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 12/79 (15%)
Query: 31 CHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDDCKPN 90
H EG+ G S+++N D + C + Q RG CE C+ +
Sbjct: 760 VHAKEGFQGCLASVDLNGRLPDLISDALFC-------NGQIERG-----CEGPSTTCQED 807
Query: 91 PCQNGGICHDLINHFSCSC 109
C N G+C + FSC C
Sbjct: 808 SCSNQGVCLQQWDGFSCDC 826
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 87 CKPNPCQNGGICHDLINHFSCSC 109
C NPC+N G+C D N + C C
Sbjct: 397 CLSNPCKNNGMCRDGWNRYVCDC 419
>pdb|1FSB|A Chain A, Structure Of The Egf Domain Of P-Selectin, Nmr, 19
Structures
Length = 40
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 49 CESDPCQNGATCQDLIGGYSCQCARGFQGQNCEL 82
C+ C C + IG Y+C C GF G CE
Sbjct: 4 CQDMSCSKQGECLETIGNYTCSCYPGFYGPECEY 37
>pdb|3ASI|A Chain A, Alpha-Neurexin-1 Ectodomain Fragment; Lns5-Egf3-Lns6
Length = 410
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 12/79 (15%)
Query: 31 CHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDDCKPN 90
H EG+ G S+++N D + C + Q RG CE C+ +
Sbjct: 144 VHAKEGFQGCLASVDLNGRLPDLISDALFC-------NGQIERG-----CEGPSTTCQED 191
Query: 91 PCQNGGICHDLINHFSCSC 109
C N G+C + FSC C
Sbjct: 192 SCSNQGVCLQQWDGFSCDC 210
>pdb|3LTF|D Chain D, Crystal Structure Of The Drosophila Epidermal Growth
Factor Receptor Ectodomain In Complex With Spitz
pdb|3LTF|B Chain B, Crystal Structure Of The Drosophila Epidermal Growth
Factor Receptor Ectodomain In Complex With Spitz
Length = 58
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 64 IGGYSCQCARGFQGQNCELNVDD 86
+ YSC+CA GF GQ CE D
Sbjct: 30 LPVYSCECAIGFMGQRCEYKEID 52
>pdb|3C9A|C Chain C, High Resolution Crystal Structure Of Argos Bound To The
Egf Domain Of Spitz
pdb|3C9A|D Chain D, High Resolution Crystal Structure Of Argos Bound To The
Egf Domain Of Spitz
pdb|3CA7|A Chain A, High Resolution Crystal Structure Of The Egf Domain Of
Spitz
pdb|3LTG|D Chain D, Crystal Structure Of The Drosophila Epidermal Growth
Factor Receptor Ectodomain Complexed With A Low
Affinity Spitz Mutant
Length = 52
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 13/20 (65%)
Query: 67 YSCQCARGFQGQNCELNVDD 86
YSC+CA GF GQ CE D
Sbjct: 33 YSCECAIGFMGQRCEYKEID 52
>pdb|2BO2|A Chain A, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Calcium.
pdb|2BO2|B Chain B, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Calcium.
pdb|2BOU|A Chain A, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Barium.
pdb|2BOX|A Chain A, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Strontium
Length = 143
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 48/113 (42%), Gaps = 26/113 (23%)
Query: 27 NSHRCHCMEGYTGSYCSI---------EINECES---DPCQNGATCQDLIGGYSCQCARG 74
N+ C C G++ S+ I +INEC + C + C + G Y C C+ G
Sbjct: 17 NATACRCNPGFS-SFSEIITTPMETCDDINECATLSKVSCGKFSDCWNTEGSYDCVCSPG 75
Query: 75 F-----------QGQNCELNVDDCKP--NPCQNGGICHDLINHFSCSCPSGLK 114
+ + +N +VD+C + C + +C + + +SC C G K
Sbjct: 76 YEPVSGAKTFKNESENTCQDVDECSSGQHQCDSSTVCFNTVGSYSCRCRPGWK 128
>pdb|1LK9|A Chain A, The Three-Dimensional Structure Of Alliinase From Garlic
pdb|1LK9|B Chain B, The Three-Dimensional Structure Of Alliinase From Garlic
Length = 448
Score = 28.1 bits (61), Expect = 2.0, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 28 SHRCHCMEGYTGSYCSIEINECESD 52
S +C C YTG CS +I C +D
Sbjct: 36 SPKCECNTCYTGPDCSEKIQGCSAD 60
>pdb|2WG3|C Chain C, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Desert Hedgehog Without
Calcium
pdb|2WG3|D Chain D, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Desert Hedgehog Without
Calcium
Length = 463
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 9/66 (13%)
Query: 16 LCHNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGF 75
LC NG C G +C C G+ G +C +CE C++G C + C C +G+
Sbjct: 398 LCRNGYCTPTG---KCCCSPGWEGDFC--RTAKCEPA-CRHGGVC---VRPNKCLCKKGY 448
Query: 76 QGQNCE 81
G CE
Sbjct: 449 LGPQCE 454
>pdb|2WFX|B Chain B, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Sonic Hedgehog In The
Presence Of Calcium
pdb|2WG4|B Chain B, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Sonic Hedgehog Without
Calcium
Length = 457
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 9/66 (13%)
Query: 16 LCHNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGF 75
LC NG C G +C C G+ G +C +CE C++G C + C C +G+
Sbjct: 398 LCRNGYCTPTG---KCCCSPGWEGDFC--RTAKCEPA-CRHGGVC---VRPNKCLCKKGY 448
Query: 76 QGQNCE 81
G CE
Sbjct: 449 LGPQCE 454
>pdb|2WFT|A Chain A, Crystal Structure Of The Human Hip Ectodomain
pdb|2WFT|B Chain B, Crystal Structure Of The Human Hip Ectodomain
Length = 458
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 9/66 (13%)
Query: 16 LCHNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGF 75
LC NG C G +C C G+ G +C +CE C++G C + C C +G+
Sbjct: 398 LCRNGYCTPTG---KCCCSPGWEGDFC--RTAKCEPA-CRHGGVC---VRPNKCLCKKGY 448
Query: 76 QGQNCE 81
G CE
Sbjct: 449 LGPQCE 454
>pdb|3HO4|A Chain A, Crystal Structure Of Hedgehog-Interacting Protein (Hhip)
pdb|3HO4|B Chain B, Crystal Structure Of Hedgehog-Interacting Protein (Hhip)
Length = 481
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 9/66 (13%)
Query: 16 LCHNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGF 75
LC NG C G +C C G+ G +C +CE C++G C + C C +G+
Sbjct: 419 LCRNGYCTPTG---KCCCSPGWEGDFC--RTAKCEP-ACRHGGVC---VRPNKCLCKKGY 469
Query: 76 QGQNCE 81
G CE
Sbjct: 470 LGPQCE 475
>pdb|3HO3|A Chain A, Crystal Structure Of Hedgehog-interacting Protein (hhip)
pdb|3HO5|A Chain A, Crystal Structure Of Hedgehog-interacting Protein (hhip)
And Sonic Hedgehog (shh) Complex
pdb|3HO5|B Chain B, Crystal Structure Of Hedgehog-interacting Protein (hhip)
And Sonic Hedgehog (shh) Complex
Length = 481
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 9/66 (13%)
Query: 16 LCHNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGF 75
LC NG C G +C C G+ G +C +CE C++G C + C C +G+
Sbjct: 419 LCRNGYCTPTG---KCCCSPGWEGDFC--RTAKCEP-ACRHGGVC---VRPNKCLCKKGY 469
Query: 76 QGQNCE 81
G CE
Sbjct: 470 LGPQCE 475
>pdb|1ESL|A Chain A, Insight Into E-Selectin(Slash)ligand Interaction From The
Crystal Structure And Mutagenesis Of The Lec(Slash)egf
Domains
Length = 162
Score = 26.6 bits (57), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 49 CESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVD 85
C + C C + I Y+C+C GF G CE V+
Sbjct: 122 CTNTSCSGHGECVETINNYTCKCDPGFSGLKCEQIVN 158
>pdb|3ZYJ|B Chain B, Netring1 In Complex With Ngl1
pdb|3ZYJ|D Chain D, Netring1 In Complex With Ngl1
Length = 426
Score = 26.6 bits (57), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Query: 92 CQNGGICHDLINHFSCSCPSGLKREALCHNGTCEDFGN 129
CQNGG CH N+ C CP+ LC CE+ G+
Sbjct: 373 CQNGGTCH---NNVRCLCPAAYT-GILCEKLRCEEAGS 406
>pdb|1G1T|A Chain A, Crystal Structure Of E-Selectin LectinEGF DOMAINS
Complexed With Slex
Length = 157
Score = 26.2 bits (56), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 49 CESDPCQNGATCQDLIGGYSCQCARGFQGQNCE 81
C + C C + I Y+C+C GF G CE
Sbjct: 122 CTNTSCSGHGECVETINNYTCKCDPGFSGLKCE 154
>pdb|3H0N|A Chain A, Crystal Structure Of A Duf1470 Family Protein (Jann_2411)
From Jannaschia Sp. Ccs1 At 1.45 A Resolution
Length = 188
Score = 25.8 bits (55), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 100 DLINHFSCSCPSGLKREALCHNGTCEDFG--NSHRCHCICWDDLRN 143
+L+ ++ C GL RE N FG N+HRC + +D RN
Sbjct: 120 ELVPXWTAICAEGLAREIGHQN--VRRFGICNAHRCDRVYFDTSRN 163
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.140 0.503
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,107,039
Number of Sequences: 62578
Number of extensions: 220990
Number of successful extensions: 804
Number of sequences better than 100.0: 156
Number of HSP's better than 100.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 73
Number of HSP's that attempted gapping in prelim test: 433
Number of HSP's gapped (non-prelim): 373
length of query: 145
length of database: 14,973,337
effective HSP length: 89
effective length of query: 56
effective length of database: 9,403,895
effective search space: 526618120
effective search space used: 526618120
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.7 bits)