RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6349
(145 letters)
>2vj3_A Neurogenic locus notch homolog protein 1; transcription,
metal-binding, transmembrane, developmental protein,
notch signaling pathway; 2.60A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A
2rr2_A*
Length = 135
Score = 122 bits (309), Expect = 5e-37
Identities = 47/95 (49%), Positives = 62/95 (65%)
Query: 18 HNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQG 77
H G C + S C C++GYTG C I++NEC S+PCQN ATC D IG + C C G++G
Sbjct: 17 HAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCICMPGYEG 76
Query: 78 QNCELNVDDCKPNPCQNGGICHDLINHFSCSCPSG 112
+CE+N D+C +PC + G C D IN F C CP+G
Sbjct: 77 VHCEVNTDECASSPCLHNGRCLDKINEFQCECPTG 111
Score = 96.9 bits (242), Expect = 6e-27
Identities = 24/79 (30%), Positives = 37/79 (46%)
Query: 18 HNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQG 77
++ TC D +C CM GY G +C + +EC S PC + C D I + C+C GF G
Sbjct: 55 NDATCLDQIGEFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTG 114
Query: 78 QNCELNVDDCKPNPCQNGG 96
C++++
Sbjct: 115 HLCQVDLHHILDAQKMVWN 133
Score = 93.0 bits (232), Expect = 2e-25
Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 14/107 (13%)
Query: 43 SIEINECE--SDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDDCKPNPCQNGGICHD 100
+ +++EC ++PC++ C + +G + CQC +G+ G CE++V++C NPCQN C D
Sbjct: 2 AQDVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLD 61
Query: 101 LINHFSCSCPSGLK-----------REALCHN-GTCEDFGNSHRCHC 135
I F C C G + + C + G C D N +C C
Sbjct: 62 QIGEFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCEC 108
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD
finger, cell adhesion, innate immunity, extracellular MA
protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Length = 143
Score = 100 bits (250), Expect = 4e-28
Identities = 41/116 (35%), Positives = 58/116 (50%), Gaps = 21/116 (18%)
Query: 18 HNGTCED--FGNSHRCHCMEGYTGSYCSIEI------------NECESDPCQNGATCQ-- 61
+ G C S C C +G+T CS + C +PC NG TC+
Sbjct: 10 NGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHNGGTCEIS 69
Query: 62 -----DLIGGYSCQCARGFQGQNCELNVDDCKPNPCQNGGICHDLINHFSCSCPSG 112
D GY C+C RGF G +C+ N+++C+ PC+NGGIC DL+ ++SC CP
Sbjct: 70 EAYRGDTFIGYVCKCPRGFNGIHCQHNINECEVEPCKNGGICTDLVANYSCECPGE 125
Score = 83.2 bits (206), Expect = 2e-21
Identities = 26/72 (36%), Positives = 36/72 (50%)
Query: 19 NGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQGQ 78
D + C C G+ G +C INECE +PC+NG C DL+ YSC+C F G+
Sbjct: 70 EAYRGDTFIGYVCKCPRGFNGIHCQHNINECEVEPCKNGGICTDLVANYSCECPGEFMGR 129
Query: 79 NCELNVDDCKPN 90
NC+ +
Sbjct: 130 NCQYKGGGHHHH 141
Score = 72.4 bits (178), Expect = 2e-17
Identities = 36/121 (29%), Positives = 46/121 (38%), Gaps = 33/121 (27%)
Query: 48 ECESDPCQNGATCQDLI--GGYSCQCARGFQGQNCELNVD------------DCKPNPCQ 93
C+ +PC+NG C + G +SC+C GF NC V+ C PNPC
Sbjct: 2 ICDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCH 61
Query: 94 NGGICH-------DLINHFSCSCPSGLK-----------REALCHNG-TCEDFGNSHRCH 134
NGG C D + C CP G C NG C D ++ C
Sbjct: 62 NGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQHNINECEVEPCKNGGICTDLVANYSCE 121
Query: 135 C 135
C
Sbjct: 122 C 122
Score = 36.6 bits (85), Expect = 7e-04
Identities = 17/30 (56%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 85 DDCKPNPCQNGGICHDLI--NHFSCSCPSG 112
D C PNPC+NGGIC + FSC CP G
Sbjct: 1 DICDPNPCENGGICLPGLADGSFSCECPDG 30
>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain,
blood coagulation, polymorphism, glycoprotein,
hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB:
1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A*
1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B*
2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Length = 134
Score = 97.4 bits (243), Expect = 3e-27
Identities = 27/96 (28%), Positives = 40/96 (41%), Gaps = 1/96 (1%)
Query: 18 HNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQG 77
+ + + ++CE+ PCQN C+D +G Y+C C GF+G
Sbjct: 14 EETCSYEEAREVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEG 73
Query: 78 QNCELNVDD-CKPNPCQNGGICHDLINHFSCSCPSG 112
+NCEL C + CH+ N CSC G
Sbjct: 74 KNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARG 109
Score = 89.3 bits (222), Expect = 5e-24
Identities = 20/83 (24%), Positives = 31/83 (37%), Gaps = 1/83 (1%)
Query: 17 CHNGTCEDFGNSHRCHCMEGYTGSYCSIEINE-CESDPCQNGATCQDLIGGYSCQCARGF 75
+ G C+D + C C+EG+ G C + + C D C + C CARG+
Sbjct: 51 QNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGY 110
Query: 76 QGQNCELNVDDCKPNPCQNGGIC 98
+ P PC +
Sbjct: 111 TLADNGKACIPTGPYPCGKQTLE 133
Score = 52.3 bits (126), Expect = 9e-10
Identities = 10/44 (22%), Positives = 14/44 (31%)
Query: 18 HNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQ 61
+ C + NS C C GYT + PC +
Sbjct: 91 CDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPYPCGKQTLER 134
Score = 48.4 bits (116), Expect = 3e-08
Identities = 13/85 (15%), Positives = 21/85 (24%), Gaps = 26/85 (30%)
Query: 51 SDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDDCKPNPCQNGGICHDLINHFSCSCP 110
C + + + N + D C+ +PCQN G
Sbjct: 9 ERECMEETCSYEEAREVFEDSDKTNEFWNKYKDGDQCETSPCQNQG-------------- 54
Query: 111 SGLKREALCHNGTCEDFGNSHRCHC 135
C+D + C C
Sbjct: 55 ------------KCKDGLGEYTCTC 67
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A
{Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Length = 195
Score = 93.3 bits (232), Expect = 7e-25
Identities = 22/104 (21%), Positives = 38/104 (36%), Gaps = 1/104 (0%)
Query: 17 CHNGTCEDFGNSHRCHCMEGYTGSYCSIEINE-CESDPCQNGATCQDLIGGYSCQCARGF 75
+ G C+D + C C+EG+ G C + + C D C + C CARG+
Sbjct: 51 QNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGY 110
Query: 76 QGQNCELNVDDCKPNPCQNGGICHDLINHFSCSCPSGLKREALC 119
+ P PC + + + SG +++
Sbjct: 111 TLADNGKACIPTGPYPCGKQTLERRKRSVAQATSSSGEAPDSIT 154
Score = 88.3 bits (219), Expect = 6e-23
Identities = 28/133 (21%), Positives = 43/133 (32%), Gaps = 13/133 (9%)
Query: 19 NGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQGQ 78
+ + + ++CE+ PCQN C+D +G Y+C C GF+G+
Sbjct: 15 ETCSYEEAREVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGK 74
Query: 79 NCELNVDD-CKPNPCQNGGICHDLINHFSCSCPSGLK-----------REALCHNG-TCE 125
NCEL C + CH+ N CSC G C
Sbjct: 75 NCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPYPCGKQTLER 134
Query: 126 DFGNSHRCHCICW 138
+ +
Sbjct: 135 RKRSVAQATSSSG 147
Score = 82.1 bits (203), Expect = 2e-20
Identities = 17/100 (17%), Positives = 25/100 (25%), Gaps = 1/100 (1%)
Query: 17 CHNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGF- 75
+ C + NS C C GYT + PC + + G
Sbjct: 90 DCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPYPCGKQTLERRKRSVAQATSSSGEA 149
Query: 76 QGQNCELNVDDCKPNPCQNGGICHDLINHFSCSCPSGLKR 115
D +P +N D + L R
Sbjct: 150 PDSITWKPYDAADLDPTENPFDLLDFNQTQPERGDNNLTR 189
Score = 59.8 bits (145), Expect = 4e-12
Identities = 19/98 (19%), Positives = 32/98 (32%), Gaps = 13/98 (13%)
Query: 51 SDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDDCKPNPCQNGGICHDLINHFSCSCP 110
C + + + N + D C+ +PCQN G C D + ++C+C
Sbjct: 9 ERECMEETCSYEEAREVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCL 68
Query: 111 SGL-------------KREALCHNGTCEDFGNSHRCHC 135
G + + C + NS C C
Sbjct: 69 EGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSC 106
>1x7a_L Coagulation factor IX, light chain; inhibition, blood
clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP:
g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Length = 146
Score = 91.3 bits (227), Expect = 1e-24
Identities = 17/84 (20%), Positives = 29/84 (34%)
Query: 17 CHNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQ 76
+ G C+D NS+ C C G+ G C ++ + C C G++
Sbjct: 57 LNGGLCKDDINSYECWCQVGFEGKNCELDATCNIKNGRCKQFCKTGADSKVLCSCTTGYR 116
Query: 77 GQNCELNVDDCKPNPCQNGGICHD 100
+ + P PC + H
Sbjct: 117 LAPDQKSCKPAVPFPCGRVSVSHS 140
Score = 90.1 bits (224), Expect = 4e-24
Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 5/95 (5%)
Query: 18 HNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQG 77
E F + + ++ ++CE +PC NG C+D I Y C C GF+G
Sbjct: 25 FEEAREVF-----ENTEKTNEFWKQYVDGDQCEPNPCLNGGLCKDDINSYECWCQVGFEG 79
Query: 78 QNCELNVDDCKPNPCQNGGICHDLINHFSCSCPSG 112
+NCEL+ N + CSC +G
Sbjct: 80 KNCELDATCNIKNGRCKQFCKTGADSKVLCSCTTG 114
Score = 36.2 bits (84), Expect = 0.001
Identities = 18/88 (20%), Positives = 27/88 (30%), Gaps = 31/88 (35%)
Query: 48 ECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDDCKPNPCQNGGICHDLINHFSC 107
EC + C + + + ++ D C+PNPC NGG
Sbjct: 17 ECIEEKCSFEEAREVF-----ENTEKTNEFWKQYVDGDQCEPNPCLNGG----------- 60
Query: 108 SCPSGLKREALCHNGTCEDFGNSHRCHC 135
C+D NS+ C C
Sbjct: 61 ---------------LCKDDINSYECWC 73
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine
protease, EGF, EGF-like domain, GLA, receptor enzyme,
glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG
GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L*
2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L*
1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L*
2flb_L* ...
Length = 142
Score = 87.8 bits (218), Expect = 2e-23
Identities = 30/101 (29%), Positives = 41/101 (40%), Gaps = 5/101 (4%)
Query: 17 CHNGTCEDFGNSHRCHCME-GYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGF 75
C C E + ++C S PCQNG +C+D + Y C C F
Sbjct: 17 CKEEQCSFEEAREIFKDAERTKLFWISYSDGDQCASSPCQNGGSCKDQLQSYICFCLPAF 76
Query: 76 QGQNCELNVDDCKPNPCQNGGICHDLINH----FSCSCPSG 112
+G+NCE + DD +NGG +H SC C G
Sbjct: 77 EGRNCETHKDDQLICVNENGGCEQYCSDHTGTKRSCRCHEG 117
Score = 82.0 bits (203), Expect = 4e-21
Identities = 20/86 (23%), Positives = 33/86 (38%), Gaps = 4/86 (4%)
Query: 17 CHNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNG---ATCQDLIG-GYSCQCA 72
+ G+C+D S+ C C+ + G C ++ +NG C D G SC+C
Sbjct: 56 QNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGTKRSCRCH 115
Query: 73 RGFQGQNCELNVDDCKPNPCQNGGIC 98
G+ ++ PC I
Sbjct: 116 EGYSLLADGVSCTPTVEYPCGKIPIL 141
Score = 43.1 bits (102), Expect = 3e-06
Identities = 12/50 (24%), Positives = 16/50 (32%), Gaps = 5/50 (10%)
Query: 17 CHNGTCEDF-----GNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQ 61
NG CE + G C C EGY+ + PC +
Sbjct: 93 NENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEYPCGKIPILE 142
Score = 34.2 bits (79), Expect = 0.005
Identities = 17/88 (19%), Positives = 25/88 (28%), Gaps = 31/88 (35%)
Query: 48 ECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDDCKPNPCQNGGICHDLINHFSC 107
EC+ + C + R + D C +PCQNGG
Sbjct: 16 ECKEEQCSFEEAREIF-----KDAERTKLFWISYSDGDQCASSPCQNGG----------- 59
Query: 108 SCPSGLKREALCHNGTCEDFGNSHRCHC 135
+C+D S+ C C
Sbjct: 60 ---------------SCKDQLQSYICFC 72
>1aut_L Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 3f6u_L*
Length = 114
Score = 74.7 bits (184), Expect = 1e-18
Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 2/86 (2%)
Query: 17 CHNGTCEDFGNSHRCHCMEGYTGSYCSIEIN--ECESDPCQNGATCQDLIGGYSCQCARG 74
C +GTC D S C C G+ G +C E++ C D C + +G C CA G
Sbjct: 23 CGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTHYCLEEVGWRRCSCAPG 82
Query: 75 FQGQNCELNVDDCKPNPCQNGGICHD 100
++ + L PC +
Sbjct: 83 YKLGDDLLQCHPAVKFPCGRPWKRME 108
Score = 65.5 bits (160), Expect = 6e-15
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Query: 43 SIEINECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVD--DCKPNPCQNGGICHD 100
+ + + C TC D IG +SC C G++G+ C+ V +C + C +
Sbjct: 11 VLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTHYCLE 70
Query: 101 LINHFSCSCPSG 112
+ CSC G
Sbjct: 71 EVGWRRCSCAPG 82
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 72.1 bits (177), Expect = 4e-16
Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
Query: 47 NECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDDCKPNPCQNGG-ICHDLINHF 105
+ C S PC + +CQD I GY+C C+ G++G NCEL ++C P C +
Sbjct: 6 SPCISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQHFCLPGQESY 65
Query: 106 SCSCPSGLKREALCHNGTCEDFGNSHRCHC 135
+CSC G + D
Sbjct: 66 TCSCAQGYRLGEDHKQCVPHDQCACGVLTS 95
Score = 57.8 bits (140), Expect = 6e-11
Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 1/77 (1%)
Query: 17 CHNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGA-TCQDLIGGYSCQCARGF 75
HNG+C+D + C C GY GS C + NEC + C Y+C CA+G+
Sbjct: 14 LHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQHFCLPGQESYTCSCAQGY 73
Query: 76 QGQNCELNVDDCKPNPC 92
+ C
Sbjct: 74 RLGEDHKQCVPHDQCAC 90
>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding,
EGF-like domain, structure and function, coagulation
factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A
Length = 39
Score = 61.7 bits (151), Expect = 3e-14
Identities = 20/39 (51%), Positives = 29/39 (74%)
Query: 44 IEINECESDPCQNGATCQDLIGGYSCQCARGFQGQNCEL 82
++ ++CES+PC NG +C+D I Y C C GF+G+NCEL
Sbjct: 1 VDGDQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCEL 39
Score = 46.3 bits (111), Expect = 2e-08
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 82 LNVDDCKPNPCQNGGICHDLINHFSCSCPSG 112
++ D C+ NPC NGG C D IN + C CP G
Sbjct: 1 VDGDQCESNPCLNGGSCKDDINSYECWCPFG 31
Score = 31.7 bits (73), Expect = 0.009
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 17 CHN-GTCEDFGNSHRCHCMEGYTGSYCSI 44
C N G+C+D NS+ C C G+ G C +
Sbjct: 11 CLNGGSCKDDINSYECWCPFGFEGKNCEL 39
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular,
developmental protein, notch signaling pathway, EGF,
DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB:
2kb9_A
Length = 169
Score = 63.5 bits (155), Expect = 1e-13
Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 12/98 (12%)
Query: 17 CHNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQ 76
+G+C+ G+ C C G+ G YC ++C P C + + C C +
Sbjct: 74 PKHGSCKLPGD---CRCQYGWQGLYC----DKCIPHPGCVHGICNE---PWQCLCETNWG 123
Query: 77 GQNCELNVDDCK-PNPCQNGGICHDL-INHFSCSCPSG 112
GQ C+ +++ C PC NGG C + + + CSCP G
Sbjct: 124 GQLCDKDLNYCGTHQPCLNGGTCSNTGPDKYQCSCPEG 161
Score = 57.4 bits (139), Expect = 2e-11
Identities = 25/96 (26%), Positives = 37/96 (38%), Gaps = 14/96 (14%)
Query: 17 CHNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQ 76
D + CMEG+ G C+ I C +C+ C+C G+Q
Sbjct: 40 FFGHYACDQNGN--KTCMEGWMGPECNRAI--CRQGCSPKHGSCKL---PGDCRCQYGWQ 92
Query: 77 GQNCELNVDDCKPNPCQNGGICHDLINHFSCSCPSG 112
G C D C P+P GIC++ + C C +
Sbjct: 93 GLYC----DKCIPHPGCVHGICNE---PWQCLCETN 121
Score = 53.9 bits (130), Expect = 4e-10
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 17 CHNGTCEDFGNSHRCHCMEGYTGSYCSIEINECES-DPCQNGATCQDL-IGGYSCQCARG 74
C +G C + +C C + G C ++N C + PC NG TC + Y C C G
Sbjct: 105 CVHGICNE---PWQCLCETNWGGQLCDKDLNYCGTHQPCLNGGTCSNTGPDKYQCSCPEG 161
Query: 75 FQGQNCEL 82
+ G NCE+
Sbjct: 162 YSGPNCEI 169
Score = 52.4 bits (126), Expect = 2e-09
Identities = 20/96 (20%), Positives = 27/96 (28%), Gaps = 13/96 (13%)
Query: 17 CHNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQ 76
H+G+ E C + Y G C+ C G D + C G+
Sbjct: 8 HHHGSIE---GRSAVTCDDYYYGFGCN---KFCRPRDDFFGHYACD--QNGNKTCMEGWM 59
Query: 77 GQNCELNVDDCKPNPCQNGGICHDLINHFSCSCPSG 112
G C C+ G C C C G
Sbjct: 60 GPECN--RAICRQGCSPKHGSCKL---PGDCRCQYG 90
Score = 37.3 bits (87), Expect = 4e-04
Identities = 11/64 (17%), Positives = 18/64 (28%), Gaps = 8/64 (12%)
Query: 49 CESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDDCKPNPCQNGGICHDLINHFSCS 108
S + + G + C + G C C+P G D + +
Sbjct: 2 RGSHHHHHHGSI---EGRSAVTCDDYYYGFGCN---KFCRPRDDFFGHYACDQNG--NKT 53
Query: 109 CPSG 112
C G
Sbjct: 54 CMEG 57
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET:
NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Length = 1245
Score = 64.1 bits (155), Expect = 5e-13
Identities = 20/115 (17%), Positives = 34/115 (29%), Gaps = 7/115 (6%)
Query: 31 CHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDDCKPN 90
E + G + + + P +G G + ++ +
Sbjct: 144 VREREPFKGWIRDVRVQSSLALPVDSGEVK-------LDDEPPNSGGGSPCEAGEEGEGG 196
Query: 91 PCQNGGICHDLINHFSCSCPSGLKREALCHNGTCEDFGNSHRCHCICWDDLRNSI 145
C NGG+C + + C C R C G E C+D +N I
Sbjct: 197 VCLNGGVCSVVDDQAVCDCSRTGFRGKDCSQGKEEYIATFKGSEYFCYDLSQNPI 251
Score = 55.6 bits (133), Expect = 5e-10
Identities = 23/113 (20%), Positives = 36/113 (31%), Gaps = 9/113 (7%)
Query: 24 DFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCAR-GFQGQNCEL 82
D G G E E C NG C + C C+R GF+G++C
Sbjct: 168 DSGEVKLDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQAVCDCSRTGFRGKDCSQ 227
Query: 83 NVDDCKPNPCQNGGICHDLINHFSCSCPSGLKRE--------ALCHNGTCEDF 127
++ + C+DL + S + + H G D+
Sbjct: 228 GKEEYIATFKGSEYFCYDLSQNPIQSSSDEITLSFKTLQRNGLMLHTGKSADY 280
Score = 49.5 bits (117), Expect = 6e-08
Identities = 21/90 (23%), Positives = 32/90 (35%), Gaps = 1/90 (1%)
Query: 16 LCHNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQC-ARG 74
L +G +D G S C S+PC+N C+D Y C C G
Sbjct: 589 LFIDGQSKDIRQMAEVQSTAGVKPSCSRETAKPCLSNPCKNNGMCRDGWNRYVCDCSGTG 648
Query: 75 FQGQNCELNVDDCKPNPCQNGGICHDLINH 104
+ G++CE + I ++ H
Sbjct: 649 YLGRSCEREATVLSYDGSMFMKIQLPVVMH 678
Score = 47.9 bits (113), Expect = 2e-07
Identities = 22/110 (20%), Positives = 35/110 (31%), Gaps = 12/110 (10%)
Query: 28 SHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDDC 87
H EG+ G S+++N D + C I + CE C
Sbjct: 973 PKLVHAKEGFQGCLASVDLNGRLPDLISDALFCNGQIE------------RGCEGPSTTC 1020
Query: 88 KPNPCQNGGICHDLINHFSCSCPSGLKREALCHNGTCEDFGNSHRCHCIC 137
+ + C N G+C + FSC C LC++ +
Sbjct: 1021 QEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKGGGQITY 1070
Score = 47.5 bits (112), Expect = 3e-07
Identities = 16/85 (18%), Positives = 26/85 (30%)
Query: 60 CQDLIGGYSCQCARGFQGQNCELNVDDCKPNPCQNGGICHDLINHFSCSCPSGLKREALC 119
+D+ Q G + C NPC+N G+C D N + C C C
Sbjct: 595 SKDIRQMAEVQSTAGVKPSCSRETAKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSC 654
Query: 120 HNGTCEDFGNSHRCHCICWDDLRNS 144
+ I + ++
Sbjct: 655 EREATVLSYDGSMFMKIQLPVVMHT 679
Score = 42.9 bits (100), Expect = 1e-05
Identities = 14/76 (18%), Positives = 21/76 (27%)
Query: 36 GYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDDCKPNPCQNG 95
G C C+ D C N C G+SC C+ + G
Sbjct: 1007 GQIERGCEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKGGG 1066
Query: 96 GICHDLINHFSCSCPS 111
I + + S +
Sbjct: 1067 QITYKWPPNDRPSTRA 1082
Score = 33.3 bits (75), Expect = 0.020
Identities = 10/44 (22%), Positives = 15/44 (34%), Gaps = 1/44 (2%)
Query: 18 HNGTCEDFGNSHRCHC-MEGYTGSYCSIEINECESDPCQNGATC 60
+ G C + C C G+ G CS E + + C
Sbjct: 200 NGGVCSVVDDQAVCDCSRTGFRGKDCSQGKEEYIATFKGSEYFC 243
Score = 29.4 bits (65), Expect = 0.50
Identities = 7/39 (17%), Positives = 12/39 (30%), Gaps = 1/39 (2%)
Query: 18 HNGTCEDFGNSHRCHC-MEGYTGSYCSIEINECESDPCQ 55
+ G C + C C M ++G C+
Sbjct: 1027 NQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKGG 1065
Score = 27.5 bits (60), Expect = 1.9
Identities = 13/112 (11%), Positives = 21/112 (18%), Gaps = 14/112 (12%)
Query: 10 GLKREALCHNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDL------ 63
G E L D H G + +++ ++ Q L
Sbjct: 725 GKGPETLFAGYNLND-NEWHTVRV--VRRGKSLKLTVDDQQAMTGQMAGDHTRLEFHNIE 781
Query: 64 -----IGGYSCQCARGFQGQNCELNVDDCKPNPCQNGGICHDLINHFSCSCP 110
Y F G L + G +
Sbjct: 782 TGIITERRYLSSVPSNFIGHLQSLTFNGMAYIDLCKNGDIDYCELNARFGFR 833
Score = 27.5 bits (60), Expect = 2.0
Identities = 8/115 (6%), Positives = 20/115 (17%), Gaps = 14/115 (12%)
Query: 31 CHCMEGYTGSYCSIEINECESDPCQNGATCQDL-------IGGY-------SCQCARGFQ 76
+I ++ + L +GG + F
Sbjct: 318 HDVKVTRNLRQVTISVDGILTTTGYTQEDYTMLGSDDFFYVGGSPSTADLPGSPVSNNFM 377
Query: 77 GQNCELNVDDCKPNPCQNGGICHDLINHFSCSCPSGLKREALCHNGTCEDFGNSH 131
G E+ + + + + + S
Sbjct: 378 GCLKEVVYKNNDVRLELSRLAKQGDPKMKIHGVVAFKCENVATLDPITFETPESF 432
Score = 27.1 bits (59), Expect = 2.6
Identities = 3/36 (8%), Positives = 6/36 (16%)
Query: 66 GYSCQCARGFQGQNCELNVDDCKPNPCQNGGICHDL 101
+ ++VD L
Sbjct: 315 NAWHDVKVTRNLRQVTISVDGILTTTGYTQEDYTML 350
>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB
domain, disease mutation, extracellular matrix,
polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A
Length = 162
Score = 60.8 bits (148), Expect = 1e-12
Identities = 23/137 (16%), Positives = 40/137 (29%), Gaps = 18/137 (13%)
Query: 17 CHNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQ 76
C +G C + S+ C C + + + + S C + G +C G
Sbjct: 12 CISGNCVNTPGSYICDCPPDFELNPTRVGCVDTRSGNCYLDIRPRGDNGDTACSNEIGVG 71
Query: 77 --GQNCELNVDDCKPNPCQNGGICHDLINHFSCSCPSG----------------LKREAL 118
+C ++ PC+ + C G + L
Sbjct: 72 VSKASCCCSLGKAWGTPCEMCPAVNTSEYKILCPGGEGFRPNPITVILEDIDECQELPGL 131
Query: 119 CHNGTCEDFGNSHRCHC 135
C G C + S +C C
Sbjct: 132 CQGGKCINTFGSFQCRC 148
Score = 50.4 bits (121), Expect = 9e-09
Identities = 20/102 (19%), Positives = 31/102 (30%), Gaps = 6/102 (5%)
Query: 17 CHNGTCEDFGNSHRCHCMEGYTGS--YCSIEINECESDPCQNGATCQDLIGGYSCQCARG 74
+ C G S C + + PC+ C G
Sbjct: 50 YLDIRPRGDNGDTACSNEIGVGVSKASCCCSLGKAWGTPCEMCPAVNTSEYKILCPGGEG 109
Query: 75 FQGQNCELN---VDDCKPNPCQ-NGGICHDLINHFSCSCPSG 112
F+ + +D+C+ P GG C + F C CP+G
Sbjct: 110 FRPNPITVILEDIDECQELPGLCQGGKCINTFGSFQCRCPTG 151
Score = 48.9 bits (117), Expect = 3e-08
Identities = 16/94 (17%), Positives = 23/94 (24%), Gaps = 3/94 (3%)
Query: 46 INECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDDCKPNPCQNGGICHDLINHF 105
+NEC C + G Y C C F+ + D + C
Sbjct: 3 VNECLDPTTCISGNCVNTPGSYICDCPPDFELNPTRVGCVDTRSGNCYLDIRPRGDNGDT 62
Query: 106 SCSCPSGLKREAL---CHNGTCEDFGNSHRCHCI 136
+CS G+ C G
Sbjct: 63 ACSNEIGVGVSKASCCCSLGKAWGTPCEMCPAVN 96
Score = 37.0 bits (86), Expect = 7e-04
Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 4/67 (5%)
Query: 17 CHNGTCEDFGNSHRCHCMEGYTGSYCSIE---INECESDPCQ-NGATCQDLIGGYSCQCA 72
C EG+ + ++ I+EC+ P G C + G + C+C
Sbjct: 90 EMCPAVNTSEYKILCPGGEGFRPNPITVILEDIDECQELPGLCQGGKCINTFGSFQCRCP 149
Query: 73 RGFQGQN 79
G+
Sbjct: 150 TGYYLNE 156
>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo
sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A
Length = 91
Score = 58.3 bits (141), Expect = 2e-12
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Query: 26 GNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLI--GGYSCQCARGFQGQNCELN 83
C C G S+ + C C NG TCQ + + CQC GF G++CE++
Sbjct: 29 NRVEYCWCNSGRAQC-HSVPVKSCSEPRCFNGGTCQQALYFSDFVCQCPEGFAGKSCEID 87
Query: 84 V 84
Sbjct: 88 T 88
Score = 56.0 bits (135), Expect = 2e-11
Identities = 19/87 (21%), Positives = 28/87 (32%), Gaps = 11/87 (12%)
Query: 28 SHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDDC 87
S++ C + T + ++ P C C G + V C
Sbjct: 1 SYQVICRDEKTQMIY--QQHQSWLRPVLRSN------RVEYCWCNSGRAQ-CHSVPVKSC 51
Query: 88 KPNPCQNGGICHDLI--NHFSCSCPSG 112
C NGG C + + F C CP G
Sbjct: 52 SEPRCFNGGTCQQALYFSDFVCQCPEG 78
Score = 27.8 bits (62), Expect = 0.56
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Query: 17 CHN-GTCED--FGNSHRCHCMEGYTGSYCSIEINE 48
C N GTC+ + + C C EG+ G C I+
Sbjct: 56 CFNGGTCQQALYFSDFVCQCPEGFAGKSCEIDTRA 90
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Length = 324
Score = 60.6 bits (147), Expect = 5e-12
Identities = 32/96 (33%), Positives = 43/96 (44%), Gaps = 15/96 (15%)
Query: 17 CHNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQ 76
+ GTC +C C G G C EI++C PC+NG C IG C+C++G+Q
Sbjct: 220 FNGGTCF---YPGKCICPPGLEGEQC--EISKC-PQPCRNGGKC---IGKSKCKCSKGYQ 270
Query: 77 GQNCELNVDDCKPNPCQNGGICHDLINHFSCSCPSG 112
G C V + C G CH+ C C G
Sbjct: 271 GDLCSKPVCEP---GCGAHGTCHE---PNKCQCQEG 300
Score = 57.6 bits (139), Expect = 6e-11
Identities = 19/80 (23%), Positives = 28/80 (35%), Gaps = 9/80 (11%)
Query: 17 CHNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQ 76
+ G C C C +GY G CS + E C TC + CQC G+
Sbjct: 252 RNGGKCIGKSK---CKCSKGYQGDLCSKPVCEP---GCGAHGTCHE---PNKCQCQEGWH 302
Query: 77 GQNCELNVDDCKPNPCQNGG 96
G++C + +
Sbjct: 303 GRHCNKRYEASLIGTKHHHH 322
Score = 57.2 bits (138), Expect = 1e-10
Identities = 31/96 (32%), Positives = 37/96 (38%), Gaps = 15/96 (15%)
Query: 17 CHNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQ 76
+ G C C C G+ G C S C NG TC C C G +
Sbjct: 188 MNGGLCV---TPGFCICPPGFYGVNCDK---ANCSTTCFNGGTC---FYPGKCICPPGLE 238
Query: 77 GQNCELNVDDCKPNPCQNGGICHDLINHFSCSCPSG 112
G+ CE + C P PC+NGG C I C C G
Sbjct: 239 GEQCE--ISKC-PQPCRNGGKC---IGKSKCKCSKG 268
Score = 39.5 bits (92), Expect = 1e-04
Identities = 13/82 (15%), Positives = 20/82 (24%), Gaps = 7/82 (8%)
Query: 31 CHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDDCKPN 90
G C + + + + + C+ P
Sbjct: 98 HKASVVQVGFPCLGKQDGVAAFEV-DVIVMNSEGNTILKTPQNAIFFKTCQQAEC---PG 153
Query: 91 PCQNGGICHDLINHFSCSCPSG 112
C+NGG C C CP G
Sbjct: 154 GCRNGGFC---NERRICECPDG 172
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo
sapiens}
Length = 426
Score = 51.4 bits (122), Expect = 1e-08
Identities = 17/93 (18%), Positives = 25/93 (26%), Gaps = 12/93 (12%)
Query: 17 CHNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQ 76
G+ C+ + + + E CQNG TC C C +
Sbjct: 338 WSPGSYLPIPKGAANACIPSISSIGT--NVCDNELLHCQNGGTC---HNNVRCLCPAAYT 392
Query: 77 GQNCELNVDDCKPNPCQNGGICHDLINHFSCSC 109
G CE C+ G C +
Sbjct: 393 GILCE-------KLRCEEAGSCGSDSGQGAPPH 418
Score = 45.2 bits (106), Expect = 1e-06
Identities = 15/106 (14%), Positives = 26/106 (24%), Gaps = 7/106 (6%)
Query: 31 CHCMEGYTGSYCSIEINECESDPCQNGA-TCQDLIGGYSCQCARGFQGQNCELNVDDCKP 89
+ Y +I C A C +C+C G +C + +
Sbjct: 276 VDELHLARYFYAISDIKVRGRCKCNLHATVCVYDNSKLTCECEHNTTGPDCGKCKKNYQG 335
Query: 90 NPCQNGGICHDLINHFSCSCPSGLKREALCHNGTCEDFGNSHRCHC 135
P G + + +C + GT C
Sbjct: 336 RPWSPGS-YLPIPKGAANACIPS-----ISSIGTNVCDNELLHCQN 375
Score = 31.0 bits (69), Expect = 0.12
Identities = 14/60 (23%), Positives = 20/60 (33%), Gaps = 10/60 (16%)
Query: 18 HNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQG 77
+ GTC N+ RC C YTG C + C+ +C G +
Sbjct: 375 NGGTCH---NNVRCLCPAAYTGILC----EKLR---CEEAGSCGSDSGQGAPPHGTHHHH 424
>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease
mutation, craniosynostosis, extracellular matrix,
fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}
Length = 147
Score = 49.3 bits (118), Expect = 2e-08
Identities = 17/92 (18%), Positives = 28/92 (30%), Gaps = 5/92 (5%)
Query: 46 INECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDDCKPNPCQNGGICHDLINHF 105
I+ECES PC NG C++ G + C+C+ + + C I
Sbjct: 4 IDECESSPCING-VCKNSPGSFICECSSESTLDPTKTICIETIKGTCWQTVIDG----RC 58
Query: 106 SCSCPSGLKREALCHNGTCEDFGNSHRCHCIC 137
+ + C + C
Sbjct: 59 EININGATLKSQCCSSLGAAWGSPCTLCQVDP 90
Score = 48.5 bits (116), Expect = 3e-08
Identities = 22/134 (16%), Positives = 30/134 (22%), Gaps = 27/134 (20%)
Query: 17 CHNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQ 76
C NG C++ S C C T E C
Sbjct: 12 CINGVCKNSPGSFICECSSESTLDPTKTICIETIKGTCWQTVIDGR----CEININGATL 67
Query: 77 GQNCELNVDDCKPNPCQNGGICHDLINHFSCSCPSG---------------LKREALCHN 121
C ++ +PC C G +C N
Sbjct: 68 KSQCCSSLGAAWGSPCTLCQ--------VDPICGKGYSRIKGTQCEDIDECEVFPGVCKN 119
Query: 122 GTCEDFGNSHRCHC 135
G C + S +C C
Sbjct: 120 GLCVNTRGSFKCQC 133
Score = 34.2 bits (79), Expect = 0.005
Identities = 15/65 (23%), Positives = 22/65 (33%), Gaps = 5/65 (7%)
Query: 17 CHNGTCEDFGNSHRCHCMEGYTGSYCS--IEINECESDPCQ-NGATCQDLIGGYSCQCAR 73
C C +GY+ + +I+ECE P C + G + CQC
Sbjct: 78 AWGSPCTL--CQVDPICGKGYSRIKGTQCEDIDECEVFPGVCKNGLCVNTRGSFKCQCPS 135
Query: 74 GFQGQ 78
G
Sbjct: 136 GMTLD 140
>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein,
repeat, signal, multigene family, disease mutation,
matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 1emo_A
Length = 82
Score = 46.8 bits (112), Expect = 4e-08
Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
Query: 46 INECESDPCQNGATCQDLIGGYSCQCARGFQGQNCE-LNVDDCKPNPCQNGGICHDLINH 104
++EC+ C + G Y C+C G+ E ++ D+C G C ++I
Sbjct: 5 MDECKEPDVCKHGQCINTDGSYRCECPFGYILAGNECVDTDECSVGNPCGNGTCKNVIGG 64
Query: 105 FSCSCPSGLKREALCHNGTCE 125
F C+C G + TCE
Sbjct: 65 FECTCEEGFE---PGPMMTCE 82
Score = 44.1 bits (105), Expect = 5e-07
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 17 CHNGTCEDFGNSHRCHCMEGYTGSYCS-IEINECESDPCQNGATCQDLIGGYSCQCARGF 75
C +G C + S+RC C GY + ++ +EC TC+++IGG+ C C GF
Sbjct: 14 CKHGQCINTDGSYRCECPFGYILAGNECVDTDECSVGNPCGNGTCKNVIGGFECTCEEGF 73
Query: 76 QG 77
+
Sbjct: 74 EP 75
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation,
neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos
taurus}
Length = 410
Score = 48.8 bits (116), Expect = 8e-08
Identities = 16/79 (20%), Positives = 21/79 (26%), Gaps = 1/79 (1%)
Query: 36 GYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCA-RGFQGQNCELNVDDCKPNPCQN 94
G C C+ D C N C G+SC C+ F G C +
Sbjct: 175 GQIERGCEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKGGG 234
Query: 95 GGICHDLINHFSCSCPSGL 113
N + L
Sbjct: 235 QITYKWPPNDRPSTRADRL 253
Score = 44.6 bits (105), Expect = 3e-06
Identities = 13/67 (19%), Positives = 22/67 (32%)
Query: 78 QNCELNVDDCKPNPCQNGGICHDLINHFSCSCPSGLKREALCHNGTCEDFGNSHRCHCIC 137
+ CE C+ + C N G+C + FSC C LC++ +
Sbjct: 179 RGCEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKGGGQITY 238
Query: 138 WDDLRNS 144
+
Sbjct: 239 KWPPNDR 245
Score = 33.8 bits (77), Expect = 0.015
Identities = 8/46 (17%), Positives = 14/46 (30%), Gaps = 1/46 (2%)
Query: 17 CHNGTCEDFGNSHRCHC-MEGYTGSYCSIEINECESDPCQNGATCQ 61
+ G C + C C M ++G C+ T +
Sbjct: 194 SNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKGGGQITYK 239
Score = 29.2 bits (65), Expect = 0.50
Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Query: 73 RGFQGQNCELNVDDCKPNPCQNGGICHDLINHFSCSCPSGLKREALCHN-GTCEDFGNSH 131
GFQG ++++ P+ + C+ I C PS +E C N G C +
Sbjct: 148 EGFQGCLASVDLNGRLPDLISDALFCNGQI-ERGCEGPSTTCQEDSCSNQGVCLQQWDGF 206
Query: 132 RCHC 135
C C
Sbjct: 207 SCDC 210
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG;
2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Length = 625
Score = 47.9 bits (114), Expect = 2e-07
Identities = 19/128 (14%), Positives = 29/128 (22%), Gaps = 14/128 (10%)
Query: 27 NSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDD 86
S R C+ + S + + +G + Q C F L +
Sbjct: 249 ESQRNLCLLKTSESG--LPSTRIKKSKALSGFSLQSCRHSIPVFCHSSFYHDTDFLGEEL 306
Query: 87 CKPN---------PCQNGGICHDLI---NHFSCSCPSGLKREALCHNGTCEDFGNSHRCH 134
C N C SC+ G L NG+ +
Sbjct: 307 DIVAAKSHEACQKLCTNAVRCQFFTYTPAQASCNEGKGKCYLKLSSNGSPTKILHGRGGI 366
Query: 135 CICWDDLR 142
L
Sbjct: 367 SGYTLRLC 374
>2bou_A EGF-like module containing mucin-like hormone receptor-like 2
precursor; CD97, CD55, 7TM, calcium-binding, cell
adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB:
2bo2_A 2box_A
Length = 143
Score = 45.6 bits (108), Expect = 4e-07
Identities = 27/124 (21%), Positives = 45/124 (36%), Gaps = 24/124 (19%)
Query: 27 NSHRCHCMEGYTGSYCSIE--------INECESD---PCQNGATCQDLIGGYSCQCARGF 75
N+ C C G++ I INEC + C + C + G Y C C+ G+
Sbjct: 17 NATACRCNPGFSSFSEIITTPMETCDDINECATLSKVSCGKFSDCWNTEGSYDCVCSPGY 76
Query: 76 QGQNCELN-----------VDDCK--PNPCQNGGICHDLINHFSCSCPSGLKREALCHNG 122
+ + VD+C + C + +C + + +SC C G K N
Sbjct: 77 EPVSGAKTFKNESENTCQDVDECSSGQHQCDSSTVCFNTVGSYSCRCRPGWKPRHGIPNN 136
Query: 123 TCED 126
+
Sbjct: 137 QKDT 140
Score = 39.0 bits (91), Expect = 1e-04
Identities = 18/82 (21%), Positives = 32/82 (39%), Gaps = 13/82 (15%)
Query: 18 HNGTCEDFGNSHRCHCMEGYTGSYCS-----------IEINECES--DPCQNGATCQDLI 64
C + S+ C C GY + +++EC S C + C + +
Sbjct: 57 KFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQDVDECSSGQHQCDSSTVCFNTV 116
Query: 65 GGYSCQCARGFQGQNCELNVDD 86
G YSC+C G++ ++ N
Sbjct: 117 GSYSCRCRPGWKPRHGIPNNQK 138
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 45.9 bits (108), Expect = 9e-07
Identities = 23/103 (22%), Positives = 34/103 (33%), Gaps = 5/103 (4%)
Query: 9 PGLKREALCHNGTCEDFGNSHRCHCMEGYTGSYCSIE-INECESDPCQNGATCQDLIGGY 67
P K C+NG D C C G+ G C E I + G +
Sbjct: 287 PDCKLRCSCNNGEMCD--RFQGCLCSPGWQGLQCEREGIPRMTPKIVDLPDHIEVNSGKF 344
Query: 68 SCQC-ARGFQGQNCELNVDDCKPNPCQNGGICHDLINHFSCSC 109
+ C A G+ E + KP+ + +HFS +
Sbjct: 345 NPICKASGWPLPTNE-EMTLVKPDGTVLHPKDFNHTDHFSVAI 386
Score = 44.7 bits (105), Expect = 2e-06
Identities = 24/147 (16%), Positives = 37/147 (25%), Gaps = 28/147 (19%)
Query: 17 CHNGTCEDFGNSHRCHCMEGYTGSYCSIEINECE-----SDPCQNGATCQD----LIGGY 67
+NG C + ++ C C G+ G C + C C+ L Y
Sbjct: 206 MNNGVCHE--DTGECICPPGFMGRTCEKACELHTFGRTCKERCSGQEGCKSYVFCLPDPY 263
Query: 68 SCQCARGFQGQNCELNVDDC-------KPNPCQNGGICHDLIN----------HFSCSCP 110
C CA G++G C C NG +C
Sbjct: 264 GCSCATGWKGLQCNEACHPGFYGPDCKLRCSCNNGEMCDRFQGCLCSPGWQGLQCEREGI 323
Query: 111 SGLKREALCHNGTCEDFGNSHRCHCIC 137
+ + + E C
Sbjct: 324 PRMTPKIVDLPDHIEVNSGKFNPICKA 350
Score = 36.6 bits (84), Expect = 0.002
Identities = 16/98 (16%), Positives = 25/98 (25%), Gaps = 10/98 (10%)
Query: 17 CHNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQD--LIGGYSCQCARG 74
NG+ H + + + + G +C
Sbjct: 134 YKNGSFIHSVPRHEVPDILEVHLPHAQPQ-DAGVYSARYIGGNLFTSAFTRLIVRRCEAQ 192
Query: 75 FQGQNCELNVDDCKPNPCQNGGICHDLINHFSCSCPSG 112
G C C N G+CH+ + C CP G
Sbjct: 193 KWGPECN-----HLCTACMNNGVCHE--DTGECICPPG 223
Score = 31.2 bits (70), Expect = 0.11
Identities = 9/75 (12%), Positives = 16/75 (21%), Gaps = 2/75 (2%)
Query: 17 CHNGTCEDFGNSHRCHC-MEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGF 75
E C G+ E+ + D + +S
Sbjct: 332 DLPDHIEVNSGKFNPICKASGWPLPTNE-EMTLVKPDGTVLHPKDFNHTDHFSVAIFTIH 390
Query: 76 QGQNCELNVDDCKPN 90
+ + V C N
Sbjct: 391 RILPPDSGVWVCSVN 405
>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan
syndrome, connective tissue, extracellular matrix,
structural protein; NMR {Homo sapiens} SCOP: g.3.11.1
g.3.11.1
Length = 86
Score = 43.4 bits (103), Expect = 9e-07
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
Query: 17 CHNGTCEDFGNSHRCHCMEGYTGSYCS----IEINECESDPCQ-NGATCQDLIGGYSCQC 71
C G C + C C EGY + ++I+EC+ DP G C + G Y C+C
Sbjct: 13 CGRGQCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLLCRGGVCHNTEGSYRCEC 72
Query: 72 ARGFQ 76
G Q
Sbjct: 73 PPGHQ 77
Score = 38.4 bits (90), Expect = 5e-05
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 6/73 (8%)
Query: 46 INECESDPCQNG-ATCQDLIGGYSCQCARGFQGQNCELN----VDDCKPNPCQ-NGGICH 99
I+EC P G C + G + C+C G++ + +D+C+ +P GG+CH
Sbjct: 3 IDECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLLCRGGVCH 62
Query: 100 DLINHFSCSCPSG 112
+ + C CP G
Sbjct: 63 NTEGSYRCECPPG 75
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G,
beta-propeller, protein binding; 3.30A {Rattus
norvegicus}
Length = 386
Score = 43.6 bits (102), Expect = 6e-06
Identities = 15/96 (15%), Positives = 27/96 (28%), Gaps = 6/96 (6%)
Query: 46 INECESDPCQNGATCQDLIGGYSCQCARGFQ----GQNCELNVDDCKPNPCQNGGICHDL 101
C + CQ + G C C G++ G+ C+ + + C C +
Sbjct: 3 EENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEGYCSQ--GCTNS 60
Query: 102 INHFSCSCPSGLKREALCHNGTCEDFGNSHRCHCIC 137
F C C +G + +
Sbjct: 61 EGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRI 96
Score = 36.7 bits (84), Expect = 0.001
Identities = 24/127 (18%), Positives = 40/127 (31%), Gaps = 9/127 (7%)
Query: 21 TCEDFGNSHRCHCMEGYTGS---YCSIEINEC-ESDPCQNGATCQDLIGGYSCQCARGFQ 76
C+ + +C C GY + ++NEC E C G C + G + C C G++
Sbjct: 16 KCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEGYCSQG--CTNSEGAFQCWCEAGYE 73
Query: 77 GQNCELNVDDCKPNPCQNGGICHDLINHFSCSCPSGLKREALCHNGTCEDFGNSHRCHCI 136
+ + P P D+ L + HR +
Sbjct: 74 LRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSE---YTLLLNNLENAIALDFHHRRELV 130
Query: 137 CWDDLRN 143
W D+
Sbjct: 131 FWSDVTL 137
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane,
secreted, protease, PALM hydrolase, developmental
protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo
sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Length = 463
Score = 43.4 bits (102), Expect = 6e-06
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 9/68 (13%)
Query: 14 EALCHNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCAR 73
LC NG C G +C C G+ G +C +CE C++G C + C C +
Sbjct: 396 SRLCRNGYCTPTG---KCCCSPGWEGDFC--RTAKCEP-ACRHGGVC---VRPNKCLCKK 446
Query: 74 GFQGQNCE 81
G+ G CE
Sbjct: 447 GYLGPQCE 454
>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor
complex, PCSK9, proprotein converta low-density
lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB:
2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A
1i0u_A 1hj7_A
Length = 107
Score = 40.4 bits (95), Expect = 2e-05
Identities = 25/98 (25%), Positives = 37/98 (37%), Gaps = 8/98 (8%)
Query: 19 NGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQGQ 78
+ + + E + NEC + C DL GY C C GFQ
Sbjct: 3 HHHHHHPMSDYDIPTTENLYFQGA-MGTNECLDNNGGCSYVCNDLKIGYECLCPDGFQLV 61
Query: 79 N---CELNVDDC-KPNPCQNGGICHDLINHFSCSCPSG 112
CE ++D+C P+ C +C +L + C C G
Sbjct: 62 AQRRCE-DIDECQDPDTCS--QLCVNLEGGYKCQCEEG 96
Score = 39.6 bits (93), Expect = 4e-05
Identities = 15/71 (21%), Positives = 22/71 (30%), Gaps = 4/71 (5%)
Query: 56 NGATCQDLIGGYSCQCARGFQGQNCELNVDDCKPNPCQNGGICHDLINHFSCSCPSGLKR 115
+ Y Q ++C N +C+DL + C CP G +
Sbjct: 2 KHHHHHHPMSDYDIPTTENLYFQGAM-GTNECLDNNGGCSYVCNDLKIGYECLCPDGFQ- 59
Query: 116 EALCHNGTCED 126
L CED
Sbjct: 60 --LVAQRRCED 68
Score = 28.8 bits (65), Expect = 0.24
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 19 NGTCEDFGNSHRCHCMEGYTGSYCS--IEINECES-DPCQNGATCQDLIGGYSCQCARGF 75
+ C D + C C +G+ +I+EC+ D C C +L GGY CQC GF
Sbjct: 40 SYVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCS--QLCVNLEGGYKCQCEEGF 97
Query: 76 Q 76
Q
Sbjct: 98 Q 98
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase,
hydrolase-lipid binding P complex; 3.30A {Homo sapiens}
PDB: 3p5c_L
Length = 400
Score = 41.0 bits (95), Expect = 5e-05
Identities = 26/99 (26%), Positives = 41/99 (41%), Gaps = 5/99 (5%)
Query: 47 NECESDPCQNGATCQDLIGGYSCQCARGFQ--GQNCELNVDDCKPNPCQNGGICHDLINH 104
NEC + C DL GY C C GFQ Q ++D+C+ +P +C +L
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQ-DPDTCSQLCVNLEGG 59
Query: 105 FSCSCPSGLKREALCHNGTCEDFGNSHRCHCICWDDLRN 143
+ C C G + + H C+ G+ ++R
Sbjct: 60 YKCQCEEGFQLDP--HTKACKAVGSIAYLFFTNRHEVRK 96
Score = 34.4 bits (78), Expect = 0.007
Identities = 27/125 (21%), Positives = 40/125 (32%), Gaps = 6/125 (4%)
Query: 21 TCEDFGNSHRCHCMEGYT--GSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQGQ 78
C D + C C +G+ +I+EC+ DP C +L GGY CQC GFQ
Sbjct: 13 VCNDLKIGYECLCPDGFQLVAQRRCEDIDECQ-DPDTCSQLCVNLEGGYKCQCEEGFQLD 71
Query: 79 NCELNVDDCKPNPCQNGGICHDLINHFSCSCPSGLKREALCHNGTCEDFGNSHRCHCICW 138
+ CK + + + + + I W
Sbjct: 72 P---HTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYW 128
Query: 139 DDLRN 143
DL
Sbjct: 129 SDLSQ 133
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain,
disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB:
2rhp_A*
Length = 634
Score = 40.0 bits (93), Expect = 1e-04
Identities = 25/102 (24%), Positives = 35/102 (34%), Gaps = 11/102 (10%)
Query: 45 EINECESDPCQNGATCQDL-IGGYSCQ-CARGFQ--GQNCELNVDDCKPN-----PCQNG 95
+ + C S+PC GA C G +SC C GF G +CE ++D+C
Sbjct: 2 DPDGCLSNPCFPGAQCSSFPDGSWSCGFCPVGFLGNGTHCE-DLDECALVPDICFSTSKV 60
Query: 96 GICHDLINHFSC-SCPSGLKREALCHNGTCEDFGNSHRCHCI 136
C + F C CP + G C
Sbjct: 61 PRCVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPE 102
Score = 28.4 bits (63), Expect = 0.93
Identities = 15/97 (15%), Positives = 26/97 (26%), Gaps = 1/97 (1%)
Query: 17 CHNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGA-TCQDLIGGYSCQCARGF 75
+ + N C G E + C + T D +G + C
Sbjct: 236 HNPAQIDTDNNGEGDACSVDIDGDDVFNERDNCPYVYNTDQRDTDGDGVGDHCDNCPLVH 295
Query: 76 QGQNCELNVDDCKPNPCQNGGICHDLINHFSCSCPSG 112
+++ D N I D + +CP
Sbjct: 296 NPDQTDVDNDLVGDQCDNNEDIDDDGHQNNQDNCPYI 332
Score = 25.4 bits (55), Expect = 8.6
Identities = 9/92 (9%), Positives = 21/92 (22%)
Query: 21 TCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQGQNC 80
++C C GY G + C + + +
Sbjct: 121 LGHFSDPMYKCECQTGYAGDGLICGEDSDLDGWPNLNLVCATNATYHCIKDNCPHLPNSG 180
Query: 81 ELNVDDCKPNPCQNGGICHDLINHFSCSCPSG 112
+ + D + +D + +C
Sbjct: 181 QEDFDKDGIGDACDDDDDNDGVTDEKDNCQLL 212
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_B* 3k72_B*
Length = 687
Score = 40.1 bits (93), Expect = 1e-04
Identities = 19/96 (19%), Positives = 24/96 (25%), Gaps = 15/96 (15%)
Query: 18 HNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQG 77
G C C C GY C + PC +C + +G G
Sbjct: 570 GRGRCRCN----VCECHSGYQLPLC--QECPGCPSPCGKYISC-----AECLKFEKGPFG 618
Query: 78 QNCELNV-DDCKPNPCQNGGICHDLINHFSCSCPSG 112
+NC N G C S C
Sbjct: 619 KNCSAACPGLQLSNNPVKGRTC---KERDSEGCWVA 651
Score = 32.4 bits (73), Expect = 0.038
Identities = 13/94 (13%), Positives = 25/94 (26%), Gaps = 7/94 (7%)
Query: 17 CHNGTCEDFGN-SHRCHCMEGYTGSYCSIE-INECESDPCQNGATCQDLIGGYSCQCARG 74
C + + + +G G CS S+ G TC++ S C
Sbjct: 595 GCPSPCGKYISCAECLKFEKGPFGKNCSAACPGLQLSNNPVKGRTCKE---RDSEGCWVA 651
Query: 75 FQGQNCELNVDDCKPNPCQNGGICHDLINHFSCS 108
+ + + D C + +
Sbjct: 652 YTLEQQDGM--DRYLIYVDESRECVAGPDGCGEN 683
Score = 31.2 bits (70), Expect = 0.11
Identities = 23/121 (19%), Positives = 31/121 (25%), Gaps = 20/121 (16%)
Query: 17 CHNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQ 76
CH + G C C GY G C + S + +C+ C
Sbjct: 437 CHGKGFLECGI---CRCDTGYIGKNCECQTQGRSSQELEG--SCRKDNNSIICSGLGDCV 491
Query: 77 GQNCELNVDDCKPNPCQNGGICHDLINHFSCSCPSGLKREALCHNGTCEDFGNSHRCHCI 136
C C + LI C C + C + G R C
Sbjct: 492 CGQCL----------CHTSDVPGKLIYGQYCECDTI-----NCERYNGQVCGGPGRGLCF 536
Query: 137 C 137
C
Sbjct: 537 C 537
Score = 28.5 bits (63), Expect = 0.85
Identities = 18/136 (13%), Positives = 31/136 (22%), Gaps = 19/136 (13%)
Query: 16 LCHNGTCEDFGNSHRCHCMEGYTGSYCS--------------IEINECESDPCQNGATCQ 61
L HN + ++ C G T ++ ++ Q +
Sbjct: 347 LDHNALPDTLKVTYDSFCSNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFVI 406
Query: 62 DLIGGYSCQCARGFQGQNCELNVDDCKPNPCQNGGICHDLINHFSCSCPSGLKREALCHN 121
+G + C + C G I C C +G + C
Sbjct: 407 RALGFTDIVTVQVLPQCECRCRDQSRDRSLCHGKGFLECGI----CRCDTGYIGK-NCEC 461
Query: 122 GTCEDFGNSHRCHCIC 137
T C
Sbjct: 462 QTQGRSSQELEGSCRK 477
>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system,
membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo
sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A*
1fsb_A
Length = 162
Score = 39.0 bits (91), Expect = 1e-04
Identities = 15/43 (34%), Positives = 18/43 (41%)
Query: 45 EINECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDDC 87
C+ C C + IG Y+C C GF G CE DD
Sbjct: 118 YTASCQDMSCSKQGECLETIGNYTCSCYPGFYGPECEYVRDDD 160
Score = 31.3 bits (71), Expect = 0.054
Identities = 7/33 (21%), Positives = 14/33 (42%)
Query: 18 HNGTCEDFGNSHRCHCMEGYTGSYCSIEINECE 50
G C + ++ C C G+ G C ++ +
Sbjct: 129 KQGECLETIGNYTCSCYPGFYGPECEYVRDDDD 161
Score = 28.2 bits (63), Expect = 0.61
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 87 CKPNPCQNGGICHDLINHFSCSCPSG 112
C+ C G C + I +++CSC G
Sbjct: 122 CQDMSCSKQGECLETIGNYTCSCYPG 147
>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR
{Homo sapiens}
Length = 87
Score = 37.6 bits (88), Expect = 1e-04
Identities = 20/87 (22%), Positives = 40/87 (45%), Gaps = 10/87 (11%)
Query: 46 INECESDP--CQNGATCQDLIGGYSCQCARGFQ----GQNCELNVDDCKPNPCQNGGICH 99
++EC P C C+++ G + C+C G++ ++CE ++D+C N C +C
Sbjct: 3 VDECSLKPSICGTA-VCKNIPGDFECECPEGYRYNLKSKSCE-DIDECSENMCA--QLCV 58
Query: 100 DLINHFSCSCPSGLKREALCHNGTCED 126
+ ++C C + +CE
Sbjct: 59 NYPGGYTCYCDGKKGFKLAQDQKSCEV 85
Score = 36.9 bits (86), Expect = 2e-04
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 7/59 (11%)
Query: 17 CHNGTCEDFGNSHRCHCMEGYT----GSYCSIEINECESDPCQNGATCQDLIGGYSCQC 71
C C++ C C EGY C +I+EC + C C + GGY+C C
Sbjct: 13 CGTAVCKNIPGDFECECPEGYRYNLKSKSC-EDIDECSENMCA--QLCVNYPGGYTCYC 68
>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell
adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A
1z3g_A
Length = 186
Score = 39.2 bits (90), Expect = 1e-04
Identities = 21/108 (19%), Positives = 34/108 (31%), Gaps = 10/108 (9%)
Query: 15 ALCHNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQ----DLIGGYSCQ 70
C N + C C+EGYT + ++ C+ C C I C
Sbjct: 60 GQCIENPDPAQVNMYXCGCIEGYTLXEDTCVLDVCQYXNCGESGECIVEYLSEIQSAGCS 119
Query: 71 CARGFQGQNCE------LNVDDCKPNPCQNGGICHDLINHFSCSCPSG 112
CA G + C+ + +C ++ + C C G
Sbjct: 120 CAIGXVPNPEDEXXCTXTGETACQLXCNTDNEVCXNVEGVYXCQCMEG 167
Score = 34.6 bits (78), Expect = 0.006
Identities = 22/111 (19%), Positives = 27/111 (24%), Gaps = 15/111 (13%)
Query: 17 CHNGTCEDFGNSHRCHCMEGYTGSYCSIEIN-----------ECESDPCQNGATCQDLIG 65
C NG N C C EG + C +
Sbjct: 13 CXNGQLVQMSNHFXCMCNEGLVHLSENTCEEXNECXXETLGXACGEFGQCIENPDPAQVN 72
Query: 66 GYSCQCARGFQGQNCELNVDDCKPNPCQNGG----ICHDLINHFSCSCPSG 112
Y C C G+ +D C+ C G I CSC G
Sbjct: 73 MYXCGCIEGYTLXEDTCVLDVCQYXNCGESGECIVEYLSEIQSAGCSCAIG 123
Score = 25.8 bits (55), Expect = 5.4
Identities = 10/79 (12%), Positives = 17/79 (21%), Gaps = 11/79 (13%)
Query: 45 EINECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVD-----------DCKPNPCQ 93
E + D + + C C G + + C
Sbjct: 3 EASAVTVDTICXNGQLVQMSNHFXCMCNEGLVHLSENTCEEXNECXXETLGXACGEFGQC 62
Query: 94 NGGICHDLINHFSCSCPSG 112
+N + C C G
Sbjct: 63 IENPDPAQVNMYXCGCIEG 81
>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine
protease, zymogen; HET: NAG; 2.20A {Homo sapiens}
Length = 424
Score = 39.5 bits (92), Expect = 1e-04
Identities = 10/111 (9%), Positives = 25/111 (22%), Gaps = 14/111 (12%)
Query: 20 GTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQGQN 79
+ + S + + C+N ++ + Y F +
Sbjct: 40 ASAQAKALSKHQDFNSA----------VQLVENFCRNPDGDEEGVWCYVAGKPGDFGYCD 89
Query: 80 CELNVDDCKPNPCQNGGICHDLINHFSCSCPSGLKREALCHNGTCEDFGNS 130
C+ + G D + + + N G +
Sbjct: 90 LN----YCEEAVEEETGDGLDEDSDRAIEGATATSEYQTFFNPATFGSGEA 136
Score = 32.9 bits (75), Expect = 0.027
Identities = 10/82 (12%), Positives = 17/82 (20%), Gaps = 10/82 (12%)
Query: 53 PCQNGATCQDLIGGYSCQCARGFQGQNCELNVDDCKPNPCQNGGICHDLINHFSCSCPSG 112
PC A+ Q Q N C+N + + + P
Sbjct: 35 PCLAWASAQAKALSKHQDFNSAVQ----------LVENFCRNPDGDEEGVWCYVAGKPGD 84
Query: 113 LKREALCHNGTCEDFGNSHRCH 134
L + +
Sbjct: 85 FGYCDLNYCEEAVEEETGDGLD 106
>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant
complex, antifibrinolytic complex, hydrolase-hydrolase
inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A
1adx_A 2adx_A
Length = 118
Score = 37.3 bits (87), Expect = 3e-04
Identities = 17/67 (25%), Positives = 21/67 (31%), Gaps = 2/67 (2%)
Query: 46 INECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDDCKPNPCQNGGICHDLINHF 105
++ C C+ D Y C CA GF E + N C
Sbjct: 4 VDPCFRANCEYQCQPLD-QTSYLCVCAEGFAPIPHEPHRCQMFCNQTACPADCDPNT-QA 61
Query: 106 SCSCPSG 112
SC CP G
Sbjct: 62 SCECPEG 68
Score = 35.4 bits (82), Expect = 0.001
Identities = 25/100 (25%), Positives = 37/100 (37%), Gaps = 8/100 (8%)
Query: 17 CHNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQ 76
C S+ C C EG+ + + A C D SC+C G+
Sbjct: 12 CEYQCQPLDQTSYLCVCAEGFAPIPHEPHRCQMFCNQTACPADC-DPNTQASCECPEGYI 70
Query: 77 ---GQNCELNVDDCK-PNPCQNGGICHDLINHFSCSCPSG 112
G C ++D+C+ C G+CH+L F C C
Sbjct: 71 LDDGFICT-DIDECENGGFCS--GVCHNLPGTFECICGPD 107
Score = 26.9 bits (60), Expect = 1.5
Identities = 17/68 (25%), Positives = 24/68 (35%), Gaps = 6/68 (8%)
Query: 16 LCHNGTCEDF---GNSHRCHCMEGYTGSYCS--IEINECESDPCQNGATCQDLIGGYSCQ 70
C+ C C C EGY +I+ECE+ +G C +L G + C
Sbjct: 45 FCNQTACPADCDPNTQASCECPEGYILDDGFICTDIDECENGGFCSG-VCHNLPGTFECI 103
Query: 71 CARGFQGQ 78
C
Sbjct: 104 CGPDSALA 111
>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal
anti-inflammatory drug, peroxi prostaglandin synthase,
EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM;
2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A*
2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A*
2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A*
1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...
Length = 553
Score = 38.5 bits (89), Expect = 4e-04
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 46 INECESDPCQNGATCQDL-IGGYSCQCAR-GFQGQNCE 81
+N C PCQ+ C + Y C C R G+ G NC
Sbjct: 2 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCT 39
Score = 30.0 bits (67), Expect = 0.28
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 84 VDDCKPNPCQNGGICHDL-INHFSCSC 109
V+ C PCQ+ GIC ++ + C C
Sbjct: 2 VNPCCYYPCQHQGICVRFGLDRYQCDC 28
>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2
g.3.11.5 PDB: 1h4u_A
Length = 285
Score = 38.2 bits (88), Expect = 4e-04
Identities = 12/61 (19%), Positives = 20/61 (32%), Gaps = 5/61 (8%)
Query: 45 EINECES--DPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDDCKPNPCQNGGICHDLI 102
C + C A C+D G+ C+C + G + +P + G I
Sbjct: 4 AQQTCANNRHQCSVHAECRDYATGFCCRCVANYTGNG---RQCVAEGSPQRVNGKVKGRI 60
Query: 103 N 103
Sbjct: 61 F 61
Score = 30.9 bits (69), Expect = 0.13
Identities = 16/91 (17%), Positives = 25/91 (27%), Gaps = 11/91 (12%)
Query: 17 CH-NGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGF 75
C + C D+ C C+ YTG+ C + Q + G + G
Sbjct: 15 CSVHAECRDYATGFCCRCVANYTGN----------GRQCVAEGSPQRVNGKVKGRIFVGS 64
Query: 76 QGQNCELNVDDCKPNPCQNGGICHDLINHFS 106
D N G + I+
Sbjct: 65 SQVPVVFENTDLHSYVVMNHGRSYTAISTIP 95
Score = 27.0 bits (59), Expect = 2.2
Identities = 9/61 (14%), Positives = 14/61 (22%), Gaps = 5/61 (8%)
Query: 78 QNCELNVDDCKPNPCQNGGICHDLINHFSCSCPSGLKREALCHNGTCEDFGNSHRCHCIC 137
Q C N C + C D F C C + + +
Sbjct: 6 QTCANNRHQCSVH-----AECRDYATGFCCRCVANYTGNGRQCVAEGSPQRVNGKVKGRI 60
Query: 138 W 138
+
Sbjct: 61 F 61
>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase,
cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS
HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A*
3ntb_A* 3q7d_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A*
6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A*
3hs6_A* 3hs7_A* 3krk_A* ...
Length = 587
Score = 37.8 bits (87), Expect = 6e-04
Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 47 NECESDPCQNGATCQDL-IGGYSCQCAR-GFQGQNCE 81
N C S+PCQN C Y C C R GF G+NC
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCT 38
Score = 29.3 bits (65), Expect = 0.52
Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 85 DDCKPNPCQNGGICHDL-INHFSCSC 109
+ C NPCQN G C + + C C
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQYKCDC 27
>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane
protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens}
SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A
Length = 157
Score = 36.7 bits (85), Expect = 7e-04
Identities = 12/37 (32%), Positives = 16/37 (43%)
Query: 45 EINECESDPCQNGATCQDLIGGYSCQCARGFQGQNCE 81
C + C C + I Y+C+C GF G CE
Sbjct: 118 YTAACTNTSCSGHGECVETINNYTCKCDPGFSGLKCE 154
Score = 29.7 bits (67), Expect = 0.20
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 80 CELNVDDCKPNPCQNGGICHDLINHFSCSCPSG 112
C C C G C + IN+++C C G
Sbjct: 117 CY--TAACTNTSCSGHGECVETINNYTCKCDPG 147
Score = 29.7 bits (67), Expect = 0.22
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 18 HNGTCEDFGNSHRCHCMEGYTGSYC 42
+G C + N++ C C G++G C
Sbjct: 129 GHGECVETINNYTCKCDPGFSGLKC 153
>3cfw_A L-selectin; EGF, cell adhesion, EGF-like domain, glycoprotein,
membrane, sushi, transmembrane; HET: NAG MAN BMA; 2.20A
{Homo sapiens}
Length = 164
Score = 34.8 bits (80), Expect = 0.004
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Query: 45 EINECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDDCKP 89
C+ C C ++I Y+C C G+ G C+ V
Sbjct: 118 YTASCQPWSCSGHGECVEIINNYTCNCDVGYYGPQCQ-FVQVDPR 161
Score = 29.0 bits (65), Expect = 0.36
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 87 CKPNPCQNGGICHDLINHFSCSCPSG 112
C+P C G C ++IN+++C+C G
Sbjct: 122 CQPWSCSGHGECVEIINNYTCNCDVG 147
Score = 28.2 bits (63), Expect = 0.81
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 18 HNGTCEDFGNSHRCHCMEGYTGSYC 42
+G C + N++ C+C GY G C
Sbjct: 129 GHGECVEIINNYTCNCDVGYYGPQC 153
>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB:
1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A
Length = 53
Score = 32.5 bits (74), Expect = 0.006
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 47 NECESDPCQNGATCQDL--IGGYSCQCARGFQGQNCE 81
C NG C + + Y+C C G+ G C+
Sbjct: 7 PSSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRCQ 43
Score = 25.2 bits (55), Expect = 2.4
Identities = 8/29 (27%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 86 DCKPNPCQNGGICHDL--INHFSCSCPSG 112
C NGG+C + ++ ++C+C G
Sbjct: 8 SSYDGYCLNGGVCMHIESLDSYTCNCVIG 36
Score = 24.0 bits (52), Expect = 6.4
Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 18 HNGTCEDFG--NSHRCHCMEGYTGSYC 42
+ G C +S+ C+C+ GY+G C
Sbjct: 16 NGGVCMHIESLDSYTCNCVIGYSGDRC 42
>4fbr_A Lectin, myxobacterial hemagglutinin; beta-barrel, HIV-inactivating,
carbohydrate binding protein; 1.60A {Myxococcus xanthus}
PDB: 4fbv_A*
Length = 267
Score = 34.3 bits (78), Expect = 0.008
Identities = 8/56 (14%), Positives = 17/56 (30%), Gaps = 6/56 (10%)
Query: 49 CESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDD------CKPNPCQNGGIC 98
S +G Y+ + GF+ + + + P +GG+
Sbjct: 102 AVSIKSNDGGKTLTGTTTYNGEGPIGFKSEVTDGDTYSVENQWGGSAAPWHSGGVW 157
Score = 29.7 bits (66), Expect = 0.33
Identities = 8/51 (15%), Positives = 13/51 (25%), Gaps = 6/51 (11%)
Query: 54 CQNGATCQDLIGGYSCQCARGFQGQNCELNVDD------CKPNPCQNGGIC 98
+G Y+ + GF+G + P GG
Sbjct: 174 SNDGGKTLSGTMTYNGEGPIGFRGTLTSPDTYTVENQWGGSTAPWNPGGFW 224
Score = 28.5 bits (63), Expect = 0.63
Identities = 16/102 (15%), Positives = 25/102 (24%), Gaps = 21/102 (20%)
Query: 19 NGTCEDFGNSHRCHCMEGYTGSYCSIEINE------CESDPCQNGATCQDLIGGYSCQCA 72
G ++ G+ G+ S S P Q G ++G
Sbjct: 43 GGKTLKGTMTYNGEGPIGFRGTLSSANNYTVENQWGGTSAPWQPGGVW--VLGARD---- 96
Query: 73 RGFQGQNCELNVDDCKPNPCQNGGICHDLINHFSCSCPSGLK 114
QN +GG ++ P G K
Sbjct: 97 ----KQNIV-----AVSIKSNDGGKTLTGTTTYNGEGPIGFK 129
Score = 28.1 bits (62), Expect = 1.1
Identities = 16/102 (15%), Positives = 28/102 (27%), Gaps = 21/102 (20%)
Query: 19 NGTCEDFGNSHRCHCMEGYTGSYCSIEINE------CESDPCQNGATCQDLIGGYSCQCA 72
G ++ G+ G+ S + + P G +IG + Q
Sbjct: 177 GGKTLSGTMTYNGEGPIGFRGTLTSPDTYTVENQWGGSTAPWNPGGFW--MIGARNGQNV 234
Query: 73 RGFQGQNCELNVDDCKPNPCQNGGICHDLINHFSCSCPSGLK 114
LNV +GG ++ P G +
Sbjct: 235 -------VALNVAS------SDGGKTLAGTMIYNGEGPIGFR 263
Score = 27.0 bits (59), Expect = 2.6
Identities = 10/49 (20%), Positives = 15/49 (30%), Gaps = 6/49 (12%)
Query: 56 NGATCQDLIGGYSCQCARGFQGQNCELNVDD------CKPNPCQNGGIC 98
+G Y+ + GF+G N P Q GG+
Sbjct: 42 DGGKTLKGTMTYNGEGPIGFRGTLSSANNYTVENQWGGTSAPWQPGGVW 90
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell
adhesion, DI mutation, glycoprotein, HOST-virus
interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo
sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Length = 690
Score = 34.3 bits (78), Expect = 0.009
Identities = 25/125 (20%), Positives = 34/125 (27%), Gaps = 17/125 (13%)
Query: 17 CHNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDL---IGGYSCQCAR 73
+G C C C +TG YC+ ++ NG C G
Sbjct: 537 SGHGQCSCG----DCLCDSDWTGYYCNCTTR-TDTCMSSNGLLCSGRGKCECGSCVCIQP 591
Query: 74 GFQGQNCELNVDDCKPNPCQNGGICHDLINHFSCSCP-SGLKREALCHNGTCEDFGNSHR 132
G G CE P+ C C + C G + N C D S +
Sbjct: 592 GSYGDTCEKC--PTCPDACTFKKECVE------CKKFDRGALHDENTCNRYCRDEIESVK 643
Query: 133 CHCIC 137
Sbjct: 644 ELKDT 648
Score = 31.6 bits (71), Expect = 0.089
Identities = 23/144 (15%), Positives = 29/144 (20%), Gaps = 33/144 (22%)
Query: 17 CHNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESD------------PCQNGATCQDLI 64
C+NG C C G+ GS C + C C
Sbjct: 448 CNNGNGTFECG--VCRCGPGWLGSQCECSEEDYRPSQQDECSPREGQPVCSQRGECLC-- 503
Query: 65 GGYSCQCARGFQGQNCE-------LNVDDCKPNPCQNGGICHDLINHFSCSCPSGLK--- 114
C C G+ + K C G C C C S
Sbjct: 504 --GQCVCHSSDFGKITGKYCECDDFSCVRYKGEMCSGHGQCSC----GDCLCDSDWTGYY 557
Query: 115 -REALCHNGTCEDFGNSHRCHCIC 137
+ G C
Sbjct: 558 CNCTTRTDTCMSSNGLLCSGRGKC 581
Score = 30.1 bits (67), Expect = 0.26
Identities = 18/110 (16%), Positives = 26/110 (23%), Gaps = 5/110 (4%)
Query: 29 HRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDDCK 88
C C S N C G C+C+ + + +
Sbjct: 431 FDCDCACQAQAEPNSHRCNNGNGTFECGVCRCGPGWLGSQCECSEEDYRPSQQDECSPRE 490
Query: 89 -PNPCQNGGICHDLINHFSCSCPSGLKREALCHNGTCEDFGNSHRCHCIC 137
C G C C C S + C+DF +C
Sbjct: 491 GQPVCSQRGECLC----GQCVCHSSDFGKITGKYCECDDFSCVRYKGEMC 536
Score = 28.5 bits (63), Expect = 0.94
Identities = 12/131 (9%), Positives = 23/131 (17%), Gaps = 7/131 (5%)
Query: 14 EALCHNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCAR 73
A C N S + ++ C + ++
Sbjct: 371 NATCLNNEVIPGLKSCMGLKIGDTVSFSIEAKVRGCPQEKEKSFTIKPVGFKDSLIVQVT 430
Query: 74 GFQGQNCELNVDDCKPNPCQNGG-------ICHDLINHFSCSCPSGLKREALCHNGTCED 126
C+ + G C C C R + + +
Sbjct: 431 FDCDCACQAQAEPNSHRCNNGNGTFECGVCRCGPGWLGSQCECSEEDYRPSQQDECSPRE 490
Query: 127 FGNSHRCHCIC 137
C
Sbjct: 491 GQPVCSQRGEC 501
>2pe4_A Hyaluronidase-1; hyaluronan, EGF-like domain, hydrolase; HET: NAG
BMA MAN; 2.00A {Homo sapiens}
Length = 424
Score = 33.8 bits (77), Expect = 0.012
Identities = 11/71 (15%), Positives = 19/71 (26%), Gaps = 3/71 (4%)
Query: 14 EALCH-NGTC--EDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQ 70
+ALC +G C + + + + C+
Sbjct: 341 QALCSGHGRCVRRTSHPKALLLLNPASFSIQLTPGGGPLSLRGALSLEDQAQMAVEFKCR 400
Query: 71 CARGFQGQNCE 81
C G+Q CE
Sbjct: 401 CYPGWQAPWCE 411
Score = 26.5 bits (58), Expect = 3.9
Identities = 11/102 (10%), Positives = 20/102 (19%), Gaps = 9/102 (8%)
Query: 20 GTCEDFGNSHRCHCMEGYT----GSY---CSIEINECESDPCQNGATC--QDLIGGYSCQ 70
+ E+ C ++ Y G + + C C C +
Sbjct: 303 VSWENTRTKESCQAIKEYMDTTLGPFILNVTSGALLCSQALCSGHGRCVRRTSHPKALLL 362
Query: 71 CARGFQGQNCELNVDDCKPNPCQNGGICHDLINHFSCSCPSG 112
+ + F C C G
Sbjct: 363 LNPASFSIQLTPGGGPLSLRGALSLEDQAQMAVEFKCRCYPG 404
>2e26_A Reelin, reeler protein; signaling protein; HET: NAG BMA; 2.00A {Mus
musculus} PDB: 3a7q_A*
Length = 725
Score = 33.5 bits (75), Expect = 0.019
Identities = 20/117 (17%), Positives = 30/117 (25%), Gaps = 11/117 (9%)
Query: 18 HNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQG 77
F + T + ++ I + D C C + G SC C + G
Sbjct: 505 TRSQATRFRWHQPAPFDKQQTWAIDNVYIGDGCLDMCSGHGRC---VQG-SCVCDEQWGG 560
Query: 78 QNCELNVDDCKPNPCQNGGICHDLIN-------HFSCSCPSGLKREALCHNGTCEDF 127
C+ N N S C + AL +G C
Sbjct: 561 LYCDEPETSLPTQLKDNFNRAPSNQNWLTVSGGKLSTVCGAVASGLALHFSGGCSRL 617
>1szb_A Mannose binding lectin-associated serine protease-2 related
protein, MAP19 (19KDA)...; calcium, complement, innate
immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1
g.3.11.1
Length = 170
Score = 31.8 bits (72), Expect = 0.036
Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 36 GYTGSYCSIEINECESDPCQNG---ATCQDLIGGYSCQCARGFQGQNCELN 83
G+ Y + +I+EC+ P + C + +GG+ C C G+ +
Sbjct: 114 GFEAFYAAEDIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRT 164
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 31.5 bits (70), Expect = 0.092
Identities = 19/102 (18%), Positives = 27/102 (26%), Gaps = 6/102 (5%)
Query: 26 GNSHRCHCMEGYTGSYCS---IEINECESDPCQNGATCQDLIGGYSCQCARGFQGQNCEL 82
N C S C E + CQ+ Y C + F +
Sbjct: 47 NNGSLVWCQNHKQCSKCLEPCKESGDLRKHQCQSFCEPLFPKKSYECLTSCEFLKYILLV 106
Query: 83 NVDDCKPNPCQNGGICHDLINHFSCSCPSGLKREALCHNGTC 124
DC P P + G + SC + C + C
Sbjct: 107 KQGDC-PAPEKASGFAAACVE--SCEVDNECSGVKKCCSNGC 145
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial
hypercholesterolemia, cholestero metabolism, lipid
transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens}
SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1
g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A
1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Length = 699
Score = 30.9 bits (69), Expect = 0.15
Identities = 25/130 (19%), Positives = 35/130 (26%), Gaps = 3/130 (2%)
Query: 17 CHNGTCEDFGN--SHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARG 74
CH+G C + C + NEC + C DL GY C C G
Sbjct: 263 CHSGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDG 322
Query: 75 FQGQNCELNVDDC-KPNPCQNGGICHDLINHFSCSCPSGLKREALCHNGTCEDFGNSHRC 133
FQ D +P +C +L + C C G + +
Sbjct: 323 FQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFF 382
Query: 134 HCICWDDLRN 143
Sbjct: 383 TNRHEVRKMT 392
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex,
beta propeller, cholesterol clearance, PCSK
autocatalytic cleavage; 7.01A {Homo sapiens}
Length = 791
Score = 31.0 bits (69), Expect = 0.15
Identities = 25/127 (19%), Positives = 36/127 (28%), Gaps = 3/127 (2%)
Query: 17 CHNGTCEDFGN--SHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARG 74
CH+G C + C + NEC + C DL GY C C G
Sbjct: 281 CHSGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDG 340
Query: 75 FQGQNCELNVDDCK-PNPCQNGGICHDLINHFSCSCPSGLKREALCHNGTCEDFGNSHRC 133
FQ D + +P +C +L + C C G + +
Sbjct: 341 FQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFF 400
Query: 134 HCICWDD 140
Sbjct: 401 TNRHEVR 407
>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase,
glycoprotein, endoso growth factor, auto-inhibition;
HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB:
1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C*
Length = 53
Score = 28.7 bits (64), Expect = 0.16
Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 47 NECESDPCQNGATCQ--DLIGGYSCQCARGFQGQNCE 81
C + C + + Y+C C G+ G+ C+
Sbjct: 7 PLSHDGYCLHDGVCMYIEALDKYACNCVVGYIGERCQ 43
>3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich
domain EGF ATP-binding, kinase, nucleotide-binding,
receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster}
Length = 58
Score = 27.6 bits (61), Expect = 0.33
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Query: 50 ESDPCQNGATCQDLIGG----YSCQCARGFQGQNCE 81
++ C N A C + YSC+CA GF GQ CE
Sbjct: 12 DAWYCLNDAHCFAVKIADLPVYSCECAIGFMGQRCE 47
>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*
Length = 188
Score = 29.1 bits (64), Expect = 0.42
Identities = 11/65 (16%), Positives = 16/65 (24%), Gaps = 3/65 (4%)
Query: 17 CHNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQ 76
+ + C+NG C C+C GF
Sbjct: 118 AFEVDVIVMNSEGNTILXTPQNAIFFKTCQQAECPGGCRNGGFC---NERRICECPDGFH 174
Query: 77 GQNCE 81
G +CE
Sbjct: 175 GPHCE 179
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein;
signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG;
1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Length = 628
Score = 29.4 bits (65), Expect = 0.47
Identities = 13/127 (10%), Positives = 28/127 (22%), Gaps = 3/127 (2%)
Query: 17 CHNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQ 76
N T + + ++ + C + +GG+ C C +
Sbjct: 238 GQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHL-CLAVPVGGFVCGCPAHYS 296
Query: 77 GQNCELNVDDCKPNPCQNGGICHDLINHFSCSCPSGLKREALCHNGTCEDFGNSHRCHCI 136
+ + + P + N D+ +
Sbjct: 297 LNADNRTCSAPTTFLLFSQKSAINRMVIDEQQSPDIILPIHSLRNVRAIDY--DPLDKQL 354
Query: 137 CWDDLRN 143
W D R
Sbjct: 355 YWIDSRQ 361
>1nzi_A Complement C1S component; calcium, innate immunity, modular
structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens}
SCOP: b.23.1.1 g.3.11.1
Length = 159
Score = 28.2 bits (63), Expect = 0.78
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
Query: 36 GYTGSYCSIEINECESDPCQN-GATCQDLIGGYSCQCARGFQGQNCELNVDDCKPN 90
G+ Y + +INEC C + IGGY C C + + ++ +C N
Sbjct: 107 GFAAYYVATDINECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHD---DMKNCGVN 159
Score = 24.8 bits (54), Expect = 9.1
Identities = 11/55 (20%), Positives = 19/55 (34%), Gaps = 5/55 (9%)
Query: 74 GFQGQNCELNVDDCKPNPCQN-GGICHDLINHFSCSCPSGLKREALCHNG-TCED 126
GF ++++C C++ I + CSCP L + C
Sbjct: 107 GFAAYYVATDINECTDFVDVPCSHFCNNFIGGYFCSCPPE---YFLHDDMKNCGV 158
>1zjk_A Mannan-binding lectin serine protease 2; beta barrel, modular
protein, hydrolase; 2.18A {Homo sapiens} SCOP: b.47.1.2
g.18.1.1 g.18.1.1 PDB: 1q3x_A
Length = 403
Score = 28.2 bits (63), Expect = 0.98
Identities = 17/130 (13%), Positives = 29/130 (22%), Gaps = 30/130 (23%)
Query: 17 CHNGTCED------FGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQ 70
NG +S C GY E+ + A CQ G +
Sbjct: 23 PPNGHVSPVQAKYILKDSFSIFCETGY-------ELLQGHLPLKSFTAVCQK--DGSWDR 73
Query: 71 CARGFQGQNCELNVDDCKPNPCQNGGICHDLINHFSCSCPSGLKREAL---CHNGTCEDF 127
+C P+ +G + + + + C
Sbjct: 74 PMPACSIVDCG------PPDDLPSGRVE------YITGPGVTTYKAVIQYSCEETFYTMK 121
Query: 128 GNSHRCHCIC 137
N + C
Sbjct: 122 VNDGKYVCEA 131
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller,
lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1
g.3.11.1
Length = 316
Score = 27.7 bits (61), Expect = 1.3
Identities = 14/69 (20%), Positives = 20/69 (28%), Gaps = 15/69 (21%)
Query: 26 GNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDL----------IGGYSCQCARGF 75
N M + +N CE NG CQ L ++C C G
Sbjct: 247 ENLLSPEDMVLFHNLTQPRGVNWCERTTLSNG-GCQYLCLPAPQINPHSPKFTCACPDGM 305
Query: 76 Q----GQNC 80
++C
Sbjct: 306 LLARDMRSC 314
>2ddu_A Reelin; beta-jelly-roll, signaling protein; 2.05A {Mus musculus}
Length = 387
Score = 27.7 bits (60), Expect = 1.5
Identities = 10/54 (18%), Positives = 15/54 (27%), Gaps = 4/54 (7%)
Query: 17 CHNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQ 70
+G C S C C GYT + + N + + Y
Sbjct: 199 SGHGDC----ISGVCFCDLGYTAAQGTCVSNTPNHSEMFDRFEGKLSPLWYKIT 248
>3ca7_A Protein spitz; argos, EGF, developmental protein,
differentiation, EGF-like domain, endoplasmic
reticulum, glycoprotein, golgi apparatus; 1.50A
{Drosophila melanogaster} PDB: 3c9a_C 3ltg_D
Length = 52
Score = 25.7 bits (56), Expect = 2.0
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 4/32 (12%)
Query: 54 CQNGATCQDLIGG----YSCQCARGFQGQNCE 81
C N A C + YSC+CA GF GQ CE
Sbjct: 16 CLNDAHCFAVKIADLPVYSCECAIGFMGQRCE 47
>1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1
PDB: 1haf_A 1hre_A 1hrf_A
Length = 63
Score = 25.9 bits (56), Expect = 2.1
Identities = 15/43 (34%), Positives = 16/43 (37%), Gaps = 5/43 (11%)
Query: 47 NECESDPCQNGATC-----QDLIGGYSCQCARGFQGQNCELNV 84
E E C NG C Y C+C GF G C NV
Sbjct: 7 AEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENV 49
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan
biosynthesis, glutamine amidotransferase, allosteric
interaction, lyase; 2.50A {Sulfolobus solfataricus}
SCOP: c.23.16.1
Length = 195
Score = 26.7 bits (60), Expect = 2.3
Identities = 4/20 (20%), Positives = 9/20 (45%)
Query: 87 CKPNPCQNGGICHDLINHFS 106
P ++ G+ D+I +
Sbjct: 56 GTPEKREDIGVSLDVIKYLG 75
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting,
fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo
sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B*
2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B*
2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B*
1tye_B*
Length = 472
Score = 26.8 bits (58), Expect = 2.7
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 3/37 (8%)
Query: 48 ECESDPCQNGATCQDLIGGYS---CQCARGFQGQNCE 81
C++ N C + G + C+C G+ G CE
Sbjct: 436 ACQAQAEPNSHRCNNGNGTFECGVCRCGPGWLGSQCE 472
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta
propeller, protein binding-antagonist complex; HET: NAG
FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Length = 318
Score = 26.6 bits (58), Expect = 3.0
Identities = 21/90 (23%), Positives = 31/90 (34%), Gaps = 4/90 (4%)
Query: 46 INECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDDCKPNPCQNGGICHDLINHF 105
I C + I A Q Q N C + + + +
Sbjct: 231 ILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFY 290
Query: 106 SCSCPSGLKREALCHNG-TCEDFGNSHRCH 134
C+CP+G+K L NG TC+D + H H
Sbjct: 291 QCACPTGVK---LLENGKTCKDGNSHHHHH 317
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA
MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Length = 503
Score = 26.4 bits (57), Expect = 4.0
Identities = 12/43 (27%), Positives = 14/43 (32%), Gaps = 4/43 (9%)
Query: 48 ECESDPCQNGATCQDLIGGYS---CQCARGFQGQNCELNVDDC 87
C D C D G C CA G G+ CE +
Sbjct: 458 NCS-DTQPQAPHCSDGQGHLQCGVCSCAPGRLGRLCESRGLEN 499
Score = 25.3 bits (54), Expect = 10.0
Identities = 6/20 (30%), Positives = 6/20 (30%)
Query: 30 RCHCMEGYTGSYCSIEINEC 49
C C G G C E
Sbjct: 480 VCSCAPGRLGRLCESRGLEN 499
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET:
NAG; 2.85A {Rattus norvegicus}
Length = 349
Score = 26.4 bits (57), Expect = 4.1
Identities = 17/103 (16%), Positives = 32/103 (31%), Gaps = 14/103 (13%)
Query: 46 INECESDP-CQNGATCQDLIGGYSCQCARGFQ----GQNCELNVDDCKPNPCQNGGICHD 100
+NEC + C G C + G + C C G++ ++C+ + I
Sbjct: 1 VNECAEEGYCSQG--CTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQV 58
Query: 101 LINHFSCSCPSGLKREALCHNGTCEDFGNSHRCHCICWDDLRN 143
L + + + HR + W D+
Sbjct: 59 LPHRSEYTLLLN-------NLENAIALDFHHRRELVFWSDVTL 94
>3rcc_A Sortase SRTA; sortase fold, beta-barrel, housekeeping sortase,
surface Pro anchoring, PILI anchoring, PILI biogenesis;
3.10A {Streptococcus agalactiae serogroup V}
Length = 160
Score = 25.5 bits (56), Expect = 5.9
Identities = 4/10 (40%), Positives = 5/10 (50%)
Query: 21 TCEDFGNSHR 30
TC D + R
Sbjct: 127 TCTDPEATER 136
Score = 25.5 bits (56), Expect = 5.9
Identities = 4/10 (40%), Positives = 5/10 (50%)
Query: 123 TCEDFGNSHR 132
TC D + R
Sbjct: 127 TCTDPEATER 136
>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL
SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A
Length = 791
Score = 25.8 bits (56), Expect = 7.0
Identities = 15/121 (12%), Positives = 23/121 (19%), Gaps = 14/121 (11%)
Query: 31 CHCMEG-YTGSYCSIEINECESDPCQNGATCQDLIG-GYSCQCARGFQGQNCELNVDDCK 88
C + C I C G Y A G C+
Sbjct: 226 CFTTDPNKRWELCDIPRCTTPPPSSGPTYQCLKGTGENYRGNVAVTVSGHTCQHWSAQTP 285
Query: 89 PNPCQNGG-ICHDLINHFSCSCPSGLKRE-----------ALCHNGTCEDFGNSHRCHCI 136
+ ++ C P G + C +C+ S
Sbjct: 286 HTHNRTPENFPCKNLDENYCRNPDGKRAPWCHTTNSQVRWEYCKIPSCDSSPVSTEQLAP 345
Query: 137 C 137
Sbjct: 346 T 346
>3g5c_A ADAM 22; alpha/beta fold, cross-linked domain, cell adhesion,
cleavag of basic residues, EGF-like domain,
glycoprotein, membrane, phosphoprotein; HET: NAG; 2.36A
{Homo sapiens}
Length = 510
Score = 25.5 bits (55), Expect = 8.4
Identities = 17/85 (20%), Positives = 24/85 (28%), Gaps = 8/85 (9%)
Query: 47 NECESDPCQNGATCQDLIGGYSC-------QCARGFQGQNCELNVDDCKPNPCQNGGICH 99
EC + + C L C +C G C V+DC +G
Sbjct: 232 AECVLEGAECCKKCT-LTQDSQCSDGLCCKKCKFQPMGTVCREAVNDCDIRETCSGNSSQ 290
Query: 100 DLINHFSCSCPSGLKREALCHNGTC 124
N S + +C G C
Sbjct: 291 CAPNIHKMDGYSCDGVQGICFGGRC 315
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.140 0.503
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,347,329
Number of extensions: 139800
Number of successful extensions: 1524
Number of sequences better than 10.0: 1
Number of HSP's gapped: 902
Number of HSP's successfully gapped: 524
Length of query: 145
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 60
Effective length of database: 4,328,508
Effective search space: 259710480
Effective search space used: 259710480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.3 bits)