RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6349
(145 letters)
>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog
protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 39
Score = 53.1 bits (128), Expect = 2e-11
Identities = 21/38 (55%), Positives = 28/38 (73%)
Query: 46 INECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELN 83
+NEC S+PCQN ATC D IG + C C G++G +CE+N
Sbjct: 1 VNECVSNPCQNDATCLDQIGEFQCICMPGYEGVHCEVN 38
Score = 40.0 bits (94), Expect = 2e-06
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 84 VDDCKPNPCQNGGICHDLINHFSCSCPSG 112
V++C NPCQN C D I F C C G
Sbjct: 1 VNECVSNPCQNDATCLDQIGEFQCICMPG 29
Score = 30.4 bits (69), Expect = 0.007
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 18 HNGTCEDFGNSHRCHCMEGYTGSYCSI 44
++ TC D +C CM GY G +C +
Sbjct: 11 NDATCLDQIGEFQCICMPGYEGVHCEV 37
>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human
(Homo sapiens) [TaxId: 9606]}
Length = 39
Score = 53.2 bits (128), Expect = 2e-11
Identities = 19/38 (50%), Positives = 27/38 (71%)
Query: 47 NECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNV 84
++CE+ PCQN C+D +G Y+C C GF+G+NCEL
Sbjct: 1 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFT 38
Score = 40.1 bits (94), Expect = 2e-06
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 85 DDCKPNPCQNGGICHDLINHFSCSCPSG 112
D C+ +PCQN G C D + ++C+C G
Sbjct: 1 DQCETSPCQNQGKCKDGLGEYTCTCLEG 28
Score = 30.4 bits (69), Expect = 0.008
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 18 HNGTCEDFGNSHRCHCMEGYTGSYCSIE 45
+ G C+D + C C+EG+ G C +
Sbjct: 10 NQGKCKDGLGEYTCTCLEGFEGKNCELF 37
>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 39
Score = 53.1 bits (128), Expect = 2e-11
Identities = 20/39 (51%), Positives = 29/39 (74%)
Query: 44 IEINECESDPCQNGATCQDLIGGYSCQCARGFQGQNCEL 82
++ ++CES+PC NG +C+D I Y C C GF+G+NCEL
Sbjct: 1 VDGDQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCEL 39
Score = 41.6 bits (98), Expect = 6e-07
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 82 LNVDDCKPNPCQNGGICHDLINHFSCSCPSG 112
++ D C+ NPC NGG C D IN + C CP G
Sbjct: 1 VDGDQCESNPCLNGGSCKDDINSYECWCPFG 31
Score = 30.4 bits (69), Expect = 0.008
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 18 HNGTCEDFGNSHRCHCMEGYTGSYCSI 44
+ G+C+D NS+ C C G+ G C +
Sbjct: 13 NGGSCKDDINSYECWCPFGFEGKNCEL 39
>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 37
Score = 50.5 bits (121), Expect = 2e-10
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 46 INECESDPCQNGATCQDLIGGYSCQCARGFQGQNCE 81
++C S PCQNG +C+D + Y C C F+G+NCE
Sbjct: 2 GDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCE 37
Score = 38.9 bits (91), Expect = 5e-06
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 84 VDDCKPNPCQNGGICHDLINHFSCSCPSG 112
D C +PCQNGG C D + + C C
Sbjct: 2 GDQCASSPCQNGGSCKDQLQSYICFCLPA 30
Score = 28.5 bits (64), Expect = 0.034
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 18 HNGTCEDFGNSHRCHCMEGYTGSYC 42
+ G+C+D S+ C C+ + G C
Sbjct: 12 NGGSCKDQLQSYICFCLPAFEGRNC 36
>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog
protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 48.5 bits (116), Expect = 1e-09
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 47 NECESDPCQNGATCQDLIGGYSCQCARGFQGQNCE 81
+EC S PC + C D I + C+C GF G C+
Sbjct: 1 DECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQ 35
Score = 38.5 bits (90), Expect = 9e-06
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 85 DDCKPNPCQNGGICHDLINHFSCSCPSG 112
D+C +PC + G C D IN F C CP+G
Sbjct: 1 DECASSPCLHNGRCLDKINEFQCECPTG 28
Score = 28.5 bits (64), Expect = 0.037
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 18 HNGTCEDFGNSHRCHCMEGYTGSYC 42
HNG C D N +C C G+TG C
Sbjct: 10 HNGRCLDKINEFQCECPTGFTGHLC 34
>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 39
Score = 48.2 bits (115), Expect = 2e-09
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 47 NECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNV 84
C + C C + I Y+C+C GF G CE V
Sbjct: 2 AACTNTSCSGHGECVETINNYTCKCDPGFSGLKCEQIV 39
Score = 37.8 bits (88), Expect = 1e-05
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 85 DDCKPNPCQNGGICHDLINHFSCSCPSG 112
C C G C + IN+++C C G
Sbjct: 2 AACTNTSCSGHGECVETINNYTCKCDPG 29
Score = 28.6 bits (64), Expect = 0.042
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 18 HNGTCEDFGNSHRCHCMEGYTGSYCSIEI 46
+G C + N++ C C G++G C +
Sbjct: 11 GHGECVETINNYTCKCDPGFSGLKCEQIV 39
>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 40
Score = 47.5 bits (113), Expect = 3e-09
Identities = 14/39 (35%), Positives = 17/39 (43%)
Query: 47 NECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVD 85
C+ C C + IG Y+C C GF G CE D
Sbjct: 2 ASCQDMSCSKQGECLETIGNYTCSCYPGFYGPECEYVRD 40
Score = 37.5 bits (87), Expect = 2e-05
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 85 DDCKPNPCQNGGICHDLINHFSCSCPSG 112
C+ C G C + I +++CSC G
Sbjct: 2 ASCQDMSCSKQGECLETIGNYTCSCYPG 29
Score = 27.8 bits (62), Expect = 0.079
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 18 HNGTCEDFGNSHRCHCMEGYTGSYC 42
G C + ++ C C G+ G C
Sbjct: 11 KQGECLETIGNYTCSCYPGFYGPEC 35
>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog
protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 42
Score = 46.6 bits (111), Expect = 6e-09
Identities = 13/41 (31%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
Query: 45 EINECE--SDPCQNGATCQDLIGGYSCQCARGFQGQNCELN 83
+++EC ++PC++ C + +G + CQC +G+ G CE++
Sbjct: 2 DVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEID 42
Score = 33.2 bits (76), Expect = 0.001
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 86 DCKPNPCQNGGICHDLINHFSCSCPSG 112
NPC++ G C + + F C C G
Sbjct: 7 SLGANPCEHAGKCINTLGSFECQCLQG 33
Score = 30.1 bits (68), Expect = 0.013
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 17 CHNGTCEDFGNSHRCHCMEGYTGSYCSI 44
H G C + S C C++GYTG C I
Sbjct: 14 EHAGKCINTLGSFECQCLQGYTGPRCEI 41
>d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 63
Score = 46.9 bits (111), Expect = 8e-09
Identities = 16/56 (28%), Positives = 20/56 (35%), Gaps = 5/56 (8%)
Query: 44 IEINECESDPCQNGATC-----QDLIGGYSCQCARGFQGQNCELNVDDCKPNPCQN 94
++ E E C NG C Y C+C GF G C NV N +
Sbjct: 4 VKCAEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENVPMKVQNQEKA 59
Score = 30.7 bits (69), Expect = 0.011
Identities = 7/40 (17%), Positives = 15/40 (37%)
Query: 17 CHNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQN 56
C + + C C G+TG+ C+ + + +
Sbjct: 20 CFMVKDLSNPSRYLCKCQPGFTGARCTENVPMKVQNQEKA 59
Score = 29.2 bits (65), Expect = 0.045
Identities = 8/35 (22%), Positives = 12/35 (34%), Gaps = 5/35 (14%)
Query: 83 NVDDCKPNPCQNGGICH-----DLINHFSCSCPSG 112
+ + C NGG C + + C C G
Sbjct: 5 KCAEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPG 39
>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin
IIa) {Human (Homo sapiens) [TaxId: 9606]}
Length = 48
Score = 40.9 bits (96), Expect = 1e-06
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 46 INECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVD 85
+ C S C +G TC D IG +SC C G++G+ C+ V
Sbjct: 8 EHPCASLCCGHG-TCIDGIGSFSCDCRSGWEGRFCQREVS 46
Score = 33.6 bits (77), Expect = 7e-04
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 17 CHNGTCEDFGNSHRCHCMEGYTGSYCSIEIN 47
C +GTC D S C C G+ G +C E++
Sbjct: 16 CGHGTCIDGIGSFSCDCRSGWEGRFCQREVS 46
Score = 27.8 bits (62), Expect = 0.097
Identities = 12/29 (41%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 84 VDDCKPNPCQNGGICHDLINHFSCSCPSG 112
C C +G C D I FSC C SG
Sbjct: 8 EHPCASLCCGHGT-CIDGIGSFSCDCRSG 35
Score = 22.8 bits (49), Expect = 5.5
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 119 CHNGTCEDFGNSHRCHC 135
C +GTC D S C C
Sbjct: 16 CGHGTCIDGIGSFSCDC 32
>d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like
module {Sheep (Ovis aries) [TaxId: 9940]}
Length = 42
Score = 38.7 bits (90), Expect = 7e-06
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 46 INECESDPCQNGATCQDL-IGGYSCQCAR-GFQGQNCE 81
+N C PCQ+ C + Y C C R G+ G NC
Sbjct: 2 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCT 39
Score = 31.3 bits (71), Expect = 0.004
Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 84 VDDCKPNPCQNGGICHDL-INHFSCSCP 110
V+ C PCQ+ GIC ++ + C C
Sbjct: 2 VNPCCYYPCQHQGICVRFGLDRYQCDCT 29
>d1tpga1 g.3.11.1 (A:51-91) Plasminogen activator (tissue-type),
t-PA {Human (Homo sapiens) [TaxId: 9606]}
Length = 41
Score = 37.5 bits (87), Expect = 2e-05
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 49 CESDPCQNGATCQDLI--GGYSCQCARGFQGQNCELNVD 85
C C NG TCQ + + CQC GF G++CE++
Sbjct: 1 CSEPRCFNGGTCQQALYFSDFVCQCPEGFAGKSCEIDTR 39
Score = 29.1 bits (65), Expect = 0.024
Identities = 7/23 (30%), Positives = 8/23 (34%)
Query: 87 CKPNPCQNGGICHDLINHFSCSC 109
C C NGG C + C
Sbjct: 1 CSEPRCFNGGTCQQALYFSDFVC 23
Score = 26.8 bits (59), Expect = 0.17
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 18 HNGTCED--FGNSHRCHCMEGYTGSYCSIEINE 48
+ GTC+ + + C C EG+ G C I+
Sbjct: 8 NGGTCQQALYFSDFVCQCPEGFAGKSCEIDTRA 40
>d1cvua2 g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EGF-like
module {Mouse (Mus musculus) [TaxId: 10090]}
Length = 41
Score = 37.5 bits (87), Expect = 2e-05
Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 47 NECESDPCQNGATCQDL-IGGYSCQCAR-GFQGQNCE 81
N C S+PCQN C Y C C R GF G+NC
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCT 38
Score = 30.5 bits (69), Expect = 0.008
Identities = 10/27 (37%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 85 DDCKPNPCQNGGICHDL-INHFSCSCP 110
+ C NPCQN G C + + C C
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQYKCDCT 28
>d1nqlb_ g.3.11.1 (B:) Epidermal growth factor, EGF {Human (Homo
sapiens) [TaxId: 9606]}
Length = 48
Score = 37.2 bits (86), Expect = 3e-05
Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 45 EINECESDPCQNGATCQDL--IGGYSCQCARGFQGQNCE 81
E C + C + + Y+C C G+ G+ C+
Sbjct: 3 ECPLSHDGYCLHDGVCMYIEALDKYACNCVVGYIGERCQ 41
Score = 28.7 bits (64), Expect = 0.050
Identities = 6/30 (20%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 85 DDCKPNPCQNGGICHDL--INHFSCSCPSG 112
C + G+C + ++ ++C+C G
Sbjct: 5 PLSHDGYCLHDGVCMYIEALDKYACNCVVG 34
Score = 22.5 bits (48), Expect = 6.5
Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 18 HNGTCE--DFGNSHRCHCMEGYTGSYC 42
H+G C + + + C+C+ GY G C
Sbjct: 14 HDGVCMYIEALDKYACNCVVGYIGERC 40
>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 53
Score = 36.8 bits (85), Expect = 5e-05
Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 45 EINECESDPCQNGATCQDL--IGGYSCQCARGFQGQNCE 81
C NG C + + Y+C C G+ G C+
Sbjct: 5 GCPSSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRCQ 43
Score = 30.6 bits (69), Expect = 0.009
Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 79 NCELNVDDCKPNPCQNGGICHDL--INHFSCSCPSG 112
N C NGG+C + ++ ++C+C G
Sbjct: 1 NSYPGCPSSYDGYCLNGGVCMHIESLDSYTCNCVIG 36
Score = 23.3 bits (50), Expect = 4.0
Identities = 9/27 (33%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 18 HNGTCE--DFGNSHRCHCMEGYTGSYC 42
+ G C + +S+ C+C+ GY+G C
Sbjct: 16 NGGVCMHIESLDSYTCNCVIGYSGDRC 42
>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 43
Score = 31.3 bits (71), Expect = 0.004
Identities = 8/36 (22%), Positives = 16/36 (44%)
Query: 44 IEINECESDPCQNGATCQDLIGGYSCQCARGFQGQN 79
++++EC+ C + G Y C+C G+
Sbjct: 3 VDMDECKEPDVCKHGQCINTDGSYRCECPFGYILAG 38
Score = 24.7 bits (54), Expect = 1.2
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 82 LNVDDCKPNPCQNGGICHDLINHFSCSCPSG 112
+++D+CK G C + + C CP G
Sbjct: 3 VDMDECKEPDVCKHGQCINTDGSYRCECPFG 33
>d1ioxa_ g.3.11.1 (A:) Betacellulin-2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 50
Score = 29.4 bits (66), Expect = 0.025
Identities = 9/36 (25%), Positives = 12/36 (33%), Gaps = 1/36 (2%)
Query: 47 NECESDPCQNGATCQDL-IGGYSCQCARGFQGQNCE 81
+ C G + SC C G+ G CE
Sbjct: 9 PKQYKHYCIKGRCRFVVAEQTPSCVCDEGYIGARCE 44
Score = 23.6 bits (51), Expect = 3.5
Identities = 10/28 (35%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
Query: 17 CHNGTCE--DFGNSHRCHCMEGYTGSYC 42
C G C + C C EGY G+ C
Sbjct: 16 CIKGRCRFVVAEQTPSCVCDEGYIGARC 43
>d1k36a_ g.3.11.1 (A:) Epiregulin, EGF-domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 46
Score = 27.8 bits (62), Expect = 0.076
Identities = 8/39 (20%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 44 IEINECESDPCQNGATCQDL-IGGYSCQCARGFQGQNCE 81
+ + + C +G + + C+C G+ G CE
Sbjct: 4 TKCSSDMNGYCLHGQCIYLVDMSQNYCRCEVGYTGVRCE 42
Score = 24.4 bits (53), Expect = 1.7
Identities = 10/28 (35%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 17 CHNGTCE--DFGNSHRCHCMEGYTGSYC 42
C +G C + + C C GYTG C
Sbjct: 14 CLHGQCIYLVDMSQNYCRCEVGYTGVRC 41
>d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 44
Score = 27.5 bits (61), Expect = 0.11
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 45 EINECESDP--CQNGATCQDLIGGYSCQCARGFQG 77
+I+EC P C G C + G + C+C G++
Sbjct: 2 DIDECRISPDLCGRG-QCVNTPGDFECKCDEGYES 35
Score = 24.4 bits (53), Expect = 1.5
Identities = 8/26 (30%), Positives = 10/26 (38%)
Query: 17 CHNGTCEDFGNSHRCHCMEGYTGSYC 42
C G C + C C EGY +
Sbjct: 13 CGRGQCVNTPGDFECKCDEGYESGFM 38
>d1moxc_ g.3.11.1 (C:) Transforming growth factor alpha {Human
(Homo sapiens) [TaxId: 9606]}
Length = 49
Score = 27.5 bits (61), Expect = 0.12
Identities = 8/36 (22%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Query: 47 NECESDPCQNGATCQ-DLIGGYSCQCARGFQGQNCE 81
+ + C +G +C C G+ G CE
Sbjct: 8 PDSHTQFCFHGTCRFLVQEDKPACVCHSGYVGARCE 43
Score = 23.3 bits (50), Expect = 4.2
Identities = 10/28 (35%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 17 CHNGTCEDFGNSHR--CHCMEGYTGSYC 42
C +GTC + C C GY G+ C
Sbjct: 15 CFHGTCRFLVQEDKPACVCHSGYVGARC 42
>d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 43
Score = 27.2 bits (60), Expect = 0.15
Identities = 9/34 (26%), Positives = 13/34 (38%)
Query: 45 EINECESDPCQNGATCQDLIGGYSCQCARGFQGQ 78
++NEC C + G Y C C F+
Sbjct: 2 DVNECLDPTTCISGNCVNTPGSYICDCPPDFELN 35
>d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 40
Score = 25.6 bits (56), Expect = 0.43
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 51 SDPCQNGATCQDLIGGYSCQCARGFQG 77
C A C+D G+ C+C + G
Sbjct: 6 RHQCSVHAECRDYATGFCCRCVANYTG 32
>d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL)
receptor, different EGF domains {Human (Homo sapiens)
[TaxId: 9606]}
Length = 40
Score = 25.5 bits (56), Expect = 0.54
Identities = 13/30 (43%), Positives = 14/30 (46%)
Query: 47 NECESDPCQNGATCQDLIGGYSCQCARGFQ 76
NEC + C DL GY C C GFQ
Sbjct: 3 NECLDNNGGCSHVCNDLKIGYECLCPDGFQ 32
Score = 23.2 bits (50), Expect = 3.5
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Query: 84 VDDCKPNPCQNGGICHDLINHFSCSCPSGLKREALCHNGTCE 125
++C N +C+DL + C CP G + L CE
Sbjct: 2 TNECLDNNGGCSHVCNDLKIGYECLCPDGFQ---LVAQRRCE 40
>d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 42
Score = 25.2 bits (55), Expect = 0.63
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 46 INECESDPCQ-NGATCQDLIGGYSCQCARGFQ 76
I+EC+ DP G C + G Y C+C G Q
Sbjct: 2 IDECQRDPLLCRGGVCHNTEGSYRCECPPGHQ 33
>d1kloa1 g.3.11.2 (A:11-65) Laminin gamma1 chain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 55
Score = 25.6 bits (56), Expect = 0.67
Identities = 13/51 (25%), Positives = 19/51 (37%), Gaps = 3/51 (5%)
Query: 53 PCQNGATCQDL---IGGYSCQCARGFQGQNCELNVDDCKPNPCQNGGICHD 100
PC G++C + C G G+ CEL D +P + G
Sbjct: 2 PCPGGSSCAIVPKTKEVVCTHCPTGTAGKRCELCDDGYFGDPLGSNGPVRL 52
>d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 43
Score = 25.1 bits (55), Expect = 0.89
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
Query: 46 INECESDPCQ-NGATCQDLIGGYSCQCARGFQ----GQNCE 81
I+EC+ P G C + G + C+C G+ + C+
Sbjct: 3 IDECQELPGLCQGGKCINTFGSFQCRCPTGYYLNEDTRVCD 43
>d1emoa2 g.3.11.1 (A:2167-2205) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 39
Score = 24.5 bits (53), Expect = 1.1
Identities = 15/31 (48%), Positives = 22/31 (70%), Gaps = 2/31 (6%)
Query: 47 NECE-SDPCQNGATCQDLIGGYSCQCARGFQ 76
+EC +PC NG TC+++IGG+ C C GF+
Sbjct: 2 DECSVGNPCGNG-TCKNVIGGFECTCEEGFE 31
>d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL)
receptor, different EGF domains {Human (Homo sapiens)
[TaxId: 9606]}
Length = 41
Score = 24.3 bits (53), Expect = 1.7
Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 46 INECESDPCQNGATCQDLIGGYSCQCARGFQ 76
I+EC+ DP C +L GGY CQC GFQ
Sbjct: 1 IDECQ-DPDTCSQLCVNLEGGYKCQCEEGFQ 30
>d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated
serine protease 2, MASP2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 45
Score = 24.1 bits (52), Expect = 2.2
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Query: 46 INECESDPCQNGA---TCQDLIGGYSCQCARGFQ 76
I+EC+ P + C + +GG+ C C G+
Sbjct: 1 IDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYV 34
>d1dx5i3 g.3.11.1 (I:423-462) Thrombomodulin, different EGF-like
domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 40
Score = 23.6 bits (51), Expect = 2.5
Identities = 9/33 (27%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 46 INECESDPCQNGATCQDLIGGYSCQCARGFQGQ 78
I+ECE + C +L G + C C
Sbjct: 2 IDECE-NGGFCSGVCHNLPGTFECICGPDSALA 33
>d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 23.8 bits (51), Expect = 2.7
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 8/41 (19%)
Query: 44 IEINECESD--------PCQNGATCQDLIGGYSCQCARGFQ 76
++++EC S Q C + +GGY C C G++
Sbjct: 2 VDLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYE 42
>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum)
[TaxId: 4682]}
Length = 425
Score = 25.0 bits (54), Expect = 4.4
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 23 EDFGNSHRCHCMEGYTGSYCSIEINECESD 52
S +C C YTG CS +I C +D
Sbjct: 31 IISEGSPKCECNTCYTGPDCSEKIQGCSAD 60
>d1nt0a3 g.3.11.1 (A:120-164) Mannose-binding protein associated
serine protease 2, MASP2 {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 45
Score = 22.6 bits (48), Expect = 7.1
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
Query: 46 INECESDPCQNGA---TCQDLIGGYSCQCARGFQ 76
++EC + + C + +GGY C C G+
Sbjct: 1 VDECRTSLGDSVPCDHYCHNYLGGYYCSCRVGYI 34
>d1ojja_ b.29.1.10 (A:) Cellobiohydrolase I (cellulase,
Endoglucanase I, CBH1) {Humicola insolens, Cel7b
[TaxId: 34413]}
Length = 399
Score = 24.4 bits (53), Expect = 7.7
Identities = 10/34 (29%), Positives = 12/34 (35%)
Query: 27 NSHRCHCMEGYTGSYCSIEINECESDPCQNGATC 60
SH H EG C N D C + +C
Sbjct: 36 LSHPIHRAEGLGPGGCGDWGNPPPKDVCPDVESC 69
>d2i9aa1 g.3.11.1 (A:10-49) Plasminogen activator (urokinase-type)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 40
Score = 22.2 bits (47), Expect = 7.9
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 25 FGNSHRCHCMEGYTGSYCSIEINE 48
F N H C+C + + G +C I+ ++
Sbjct: 16 FSNIHWCNCPKKFGGQHCEIDKSK 39
>d2o9ca1 d.110.2.1 (A:135-321) Bacteriophytochrome BphP {Deinococcus
radiodurans [TaxId: 1299]}
Length = 187
Score = 23.8 bits (51), Expect = 8.6
Identities = 7/65 (10%), Positives = 17/65 (26%)
Query: 67 YSCQCARGFQGQNCELNVDDCKPNPCQNGGICHDLINHFSCSCPSGLKREALCHNGTCED 126
AR ++ D + + + N + + L+ + H +
Sbjct: 73 DIPAQARALYTRHLLRLTADTRAAAVPLDPVLNPQTNAPTPLGGAVLRATSPMHMQYLRN 132
Query: 127 FGNSH 131
G
Sbjct: 133 MGVGS 137
>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 141
Score = 23.8 bits (51), Expect = 9.0
Identities = 3/16 (18%), Positives = 6/16 (37%)
Query: 89 PNPCQNGGICHDLINH 104
+ NG I ++
Sbjct: 99 KHVDANGKIYLPYLHE 114
>d1nl1a2 g.32.1.1 (A:1-65) Prothrombin {Cow (Bos taurus) [TaxId:
9913]}
Length = 65
Score = 22.4 bits (48), Expect = 9.7
Identities = 3/15 (20%), Positives = 6/15 (40%)
Query: 48 ECESDPCQNGATCQD 62
E +P + C +
Sbjct: 49 ESARNPREKLNECLE 63
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.140 0.503
Gapped
Lambda K H
0.267 0.0607 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 639,754
Number of extensions: 34120
Number of successful extensions: 407
Number of sequences better than 10.0: 1
Number of HSP's gapped: 321
Number of HSP's successfully gapped: 196
Length of query: 145
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 68
Effective length of database: 1,350,386
Effective search space: 91826248
Effective search space used: 91826248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (22.9 bits)