BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6350
(189 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1YO5|C Chain C, Analysis Of The 2.0a Crystal Structure Of The Protein-Dna
Complex Of Human Pdef Ets Domain Bound To The Prostate
Specific Antigen Regulatory Site
Length = 97
Score = 63.5 bits (153), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 36/45 (80%)
Query: 100 RYIKWTNRERGVFKLVDSKAVSRLWGLHKNKPDMNYETMGRALRS 144
R+I+W N+E+G+FK+ DS V+RLWG+ KN+P MNY+ + R++R
Sbjct: 29 RFIRWLNKEKGIFKIEDSAQVARLWGIRKNRPAMNYDKLSRSIRQ 73
>pdb|1DUX|C Chain C, Elk-1DNA STRUCTURE REVEALS HOW RESIDUES DISTAL FROM DNA-
Binding Surface Affect Dna-Recognition
pdb|1DUX|F Chain F, Elk-1DNA STRUCTURE REVEALS HOW RESIDUES DISTAL FROM DNA-
Binding Surface Affect Dna-Recognition
Length = 94
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 26/42 (61%), Positives = 34/42 (80%)
Query: 102 IKWTNRERGVFKLVDSKAVSRLWGLHKNKPDMNYETMGRALR 143
I WT+R+ G FKLVD++ V+RLWGL KNK +MNY+ + RALR
Sbjct: 24 ISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKLSRALR 65
>pdb|2LF8|A Chain A, Intramolecular Regulation Of The Ets Domain Within Etv6
Sequence R335 To R458
Length = 128
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 38/58 (65%)
Query: 101 YIKWTNRERGVFKLVDSKAVSRLWGLHKNKPDMNYETMGRALRSSVVLTRLRTKCTQK 158
+I+W ++E +F++VD ++RLWG HKN+ +M YE M RALR L +R + Q+
Sbjct: 23 FIRWEDKESKIFRIVDPNGLARLWGNHKNRTNMTYEKMSRALRHYYKLNIIRKEPGQR 80
>pdb|2DAO|A Chain A, Solution Structure Of Ets Domain Transcriptional Factor
Etv6 Protein
Length = 118
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 38/58 (65%)
Query: 101 YIKWTNRERGVFKLVDSKAVSRLWGLHKNKPDMNYETMGRALRSSVVLTRLRTKCTQK 158
+I+W ++E +F++VD ++RLWG HKN+ +M YE M RALR L +R + Q+
Sbjct: 27 FIRWEDKESKIFRIVDPNGLARLWGNHKNRTNMTYEKMSRALRHYYKLNIIRKEPGQR 84
>pdb|2LF7|A Chain A, Intramolecular Regulation Of The Ets Domain Within Etv6
Sequence R335 To Q436
Length = 106
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 38/58 (65%)
Query: 101 YIKWTNRERGVFKLVDSKAVSRLWGLHKNKPDMNYETMGRALRSSVVLTRLRTKCTQK 158
+I+W ++E +F++VD ++RLWG HKN+ +M YE M RALR L +R + Q+
Sbjct: 23 FIRWEDKESKIFRIVDPNGLARLWGNHKNRTNMTYEKMSRALRHYYKLNIIRKEPGQR 80
>pdb|1HBX|G Chain G, Ternary Complex Of Sap-1 And Srf With Specific Sre Dna
pdb|1HBX|H Chain H, Ternary Complex Of Sap-1 And Srf With Specific Sre Dna
Length = 157
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Query: 102 IKWTNRERGVFKLVDSKAVSRLWGLHKNKPDMNYETMGRALRSSVVLTRLRTKCTQK 158
I WT+ + G FKL+ ++ V+RLWG+ KNKP+MNY+ + RALR V ++ QK
Sbjct: 25 ICWTSND-GQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALRYYYVKNIIKKVNGQK 80
>pdb|1BC7|C Chain C, Serum Response Factor Accessory Protein 1a (Sap-1)DNA
Complex
pdb|1BC8|C Chain C, Structures Of Sap-1 Bound To Dna Sequences From The E74
And C-Fos Promoters Provide Insights Into How Ets
Proteins Discriminate Between Related Dna Targets
pdb|1K6O|A Chain A, Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dna
Complex
Length = 93
Score = 53.5 bits (127), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Query: 102 IKWTNRERGVFKLVDSKAVSRLWGLHKNKPDMNYETMGRALRSSVVLTRLRTKCTQK 158
I WT+ + G FKL+ ++ V+RLWG+ KNKP+MNY+ + RALR V ++ QK
Sbjct: 24 ICWTSND-GQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALRYYYVKNIIKKVNGQK 79
>pdb|3JTG|A Chain A, Crystal Structure Of Mouse Elf3 C-Terminal Dna-Binding
Domai Complex With Type Ii Tgf-Beta Receptor Promoter
Dna
Length = 103
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 29/42 (69%)
Query: 102 IKWTNRERGVFKLVDSKAVSRLWGLHKNKPDMNYETMGRALR 143
+KW NR GVFK + S+AV++LWG K +M YE + RA+R
Sbjct: 25 MKWENRHEGVFKFLRSEAVAQLWGQKKKNSNMTYEKLSRAMR 66
>pdb|1WWX|A Chain A, Solution Structure Of The Ets-Domain Of The Ets Domain
Transcription Factor
Length = 107
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 31/42 (73%)
Query: 102 IKWTNRERGVFKLVDSKAVSRLWGLHKNKPDMNYETMGRALR 143
++W +RE+G+F++V S+A++++WG K M YE + RALR
Sbjct: 29 LEWEDREQGIFRVVKSEALAKMWGQRKKNDRMTYEKLSRALR 70
>pdb|3MFK|A Chain A, Ets1 Complex With Stromelysin-1 Promoter Dna
pdb|3MFK|B Chain B, Ets1 Complex With Stromelysin-1 Promoter Dna
Length = 162
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 98 CPRYIKWTNRERGVFKLVDSKAVSRLWGLHKNKPDMNYETMGRALR 143
C +I WT + FKL D V+R WG KNKP MNYE + R LR
Sbjct: 71 CQSFISWTG-DGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLR 115
>pdb|3RI4|A Chain A, Ets1 Cooperative Binding To Widely Separated Sites On
Promoter Dna
pdb|3RI4|D Chain D, Ets1 Cooperative Binding To Widely Separated Sites On
Promoter Dna
Length = 163
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 98 CPRYIKWTNRERGVFKLVDSKAVSRLWGLHKNKPDMNYETMGRALR 143
C +I WT + FKL D V+R WG KNKP MNYE + R LR
Sbjct: 72 CQSFISWTG-DGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLR 116
>pdb|1MDM|B Chain B, Inhibited Fragment Of Ets-1 And Paired Domain Of Pax5
Bound To Dna
Length = 161
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 98 CPRYIKWTNRERGVFKLVDSKAVSRLWGLHKNKPDMNYETMGRALR 143
C +I WT + FKL D V+R WG KNKP MNYE + R LR
Sbjct: 71 CQSFISWTG-DGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLR 115
>pdb|1R36|A Chain A, Nmr-Based Structure Of Autoinhibited Murine Ets-1
Deltan301
Length = 140
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 98 CPRYIKWTNRERGVFKLVDSKAVSRLWGLHKNKPDMNYETMGRALR 143
C +I WT + FKL D V+R WG KNKP MNYE + R LR
Sbjct: 50 CQSFISWTG-DGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLR 94
>pdb|1MD0|A Chain A, Crystal Structure Of An Inhibited Fragment Of Ets-1
pdb|1MD0|B Chain B, Crystal Structure Of An Inhibited Fragment Of Ets-1
Length = 141
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 98 CPRYIKWTNRERGVFKLVDSKAVSRLWGLHKNKPDMNYETMGRALR 143
C +I WT + FKL D V+R WG KNKP MNYE + R LR
Sbjct: 51 CQSFISWTG-DGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLR 95
>pdb|1GVJ|A Chain A, Ets-1 Dna Binding And Autoinhibitory Domains
pdb|1GVJ|B Chain B, Ets-1 Dna Binding And Autoinhibitory Domains
Length = 146
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 98 CPRYIKWTNRERGVFKLVDSKAVSRLWGLHKNKPDMNYETMGRALR 143
C +I WT + FKL D V+R WG KNKP MNYE + R LR
Sbjct: 55 CQSFISWTG-DGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLR 99
>pdb|2STT|A Chain A, Solution Nmr Structure Of The Human Ets1DNA COMPLEX, 25
Structures
pdb|2STW|A Chain A, Solution Nmr Structure Of The Human Ets1DNA COMPLEX,
Restrained Regularized Mean Structure
Length = 96
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 98 CPRYIKWTNRERGVFKLVDSKAVSRLWGLHKNKPDMNYETMGRALR 143
C +I WT + FKL D V+R WG KNKP MNYE + R LR
Sbjct: 31 CQSFISWTG-DGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLR 75
>pdb|1K78|B Chain B, Pax5(1-149)+ets-1(331-440)+dna
pdb|1K78|F Chain F, Pax5(1-149)+ets-1(331-440)+dna
pdb|1K79|A Chain A, Ets-1(331-440)+ggaa Duplex
pdb|1K79|D Chain D, Ets-1(331-440)+ggaa Duplex
pdb|1K7A|A Chain A, Ets-1(331-440)+ggag Duplex
pdb|1K7A|D Chain D, Ets-1(331-440)+ggag Duplex
Length = 110
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 98 CPRYIKWTNRERGVFKLVDSKAVSRLWGLHKNKPDMNYETMGRALR 143
C +I WT + FKL D V+R WG KNKP MNYE + R LR
Sbjct: 20 CQSFISWTG-DGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLR 64
>pdb|4AVP|A Chain A, Crystal Structure Of The Dna-Binding Domain Of Human Etv1.
pdb|4AVP|B Chain B, Crystal Structure Of The Dna-Binding Domain Of Human Etv1.
pdb|4AVP|C Chain C, Crystal Structure Of The Dna-Binding Domain Of Human Etv1.
pdb|4AVP|D Chain D, Crystal Structure Of The Dna-Binding Domain Of Human Etv1.
pdb|4B06|A Chain A, Crystal Structure Of The Dna-Binding Domain Of Human Etv1
Complexed With Dna
Length = 106
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 32/44 (72%), Gaps = 3/44 (6%)
Query: 101 YIKWTNRERGV-FKLVDSKAVSRLWGLHKNKPDMNYETMGRALR 143
+I WT R G+ FKL++ + V+R WG+ KN+P MNY+ + R+LR
Sbjct: 30 FIAWTGR--GMEFKLIEPEEVARRWGIQKNRPAMNYDKLSRSLR 71
>pdb|2NNY|A Chain A, Crystal Structure Of The Ets1 Dimer Dna Complex.
pdb|2NNY|B Chain B, Crystal Structure Of The Ets1 Dimer Dna Complex
Length = 171
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 101 YIKWTNRERGVFKLVDSKAVSRLWGLHKNKPDMNYETMGRALR 143
+I WT + FKL D V+R WG KNKP MNYE + R LR
Sbjct: 83 FISWTG-DGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLR 124
>pdb|2YPR|A Chain A, Crystal Structure Of The Dna Binding Ets Domain Of Human
Protein Fev
pdb|2YPR|B Chain B, Crystal Structure Of The Dna Binding Ets Domain Of Human
Protein Fev
Length = 102
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 24/34 (70%)
Query: 110 GVFKLVDSKAVSRLWGLHKNKPDMNYETMGRALR 143
G FKL D V+R WG K+KP+MNY+ + RALR
Sbjct: 34 GEFKLTDPDEVARRWGERKSKPNMNYDKLSRALR 67
>pdb|1AWC|A Chain A, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 110
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 102 IKWTNRERGVFKLVDSKAVSRLWGLHKNKPDMNYETMGRALR 143
I W E G FKL + V++ WG KNKP MNYE + RALR
Sbjct: 20 ISWVGDE-GEFKLNQPELVAQKWGQRKNKPTMNYEKLSRALR 60
>pdb|1FLI|A Chain A, Dna-Binding Domain Of Fli-1
Length = 98
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 3/48 (6%)
Query: 110 GVFKLVDSKAVSRLWGLHKNKPDMNYETMGRALR---SSVVLTRLRTK 154
G FK+ D V+R WG K+KP+MNY+ + RALR ++T++ K
Sbjct: 32 GEFKMTDPDEVARRWGERKSKPNMNYDKLSRALRYYYDKNIMTKVHGK 79
>pdb|1PUE|E Chain E, Pu.1 Ets Domain-Dna Complex
pdb|1PUE|F Chain F, Pu.1 Ets Domain-Dna Complex
Length = 89
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Query: 102 IKWTNRERGVFKLVDS--KAVSRLWGLHK-NKPDMNYETMGRALRS 144
I W ++++G F+ +A++ WG+ K N+ M YE M RALR+
Sbjct: 21 IWWVDKDKGTFQFSSKHKEALAHRWGIQKGNRKKMTYEKMARALRN 66
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,992,951
Number of Sequences: 62578
Number of extensions: 162856
Number of successful extensions: 215
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 193
Number of HSP's gapped (non-prelim): 23
length of query: 189
length of database: 14,973,337
effective HSP length: 93
effective length of query: 96
effective length of database: 9,153,583
effective search space: 878743968
effective search space used: 878743968
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)