Query psy6350
Match_columns 189
No_of_seqs 133 out of 242
Neff 3.6
Searched_HMMs 29240
Date Sat Aug 17 00:10:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6350.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6350hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yo5_C SAM pointed domain cont 100.0 9.6E-41 3.3E-45 254.1 7.4 89 79-167 8-97 (97)
2 3jtg_A ETS-related transcripti 100.0 5.1E-40 1.7E-44 252.1 9.0 88 79-166 2-89 (103)
3 1wwx_A E74-like factor 5 ESE-2 100.0 8.6E-39 2.9E-43 247.1 9.4 87 79-166 6-92 (107)
4 1fli_A FLI-1; transcription/DN 100.0 5.3E-39 1.8E-43 245.0 6.1 88 79-168 3-90 (98)
5 1bc8_C SAP-1, protein (SAP-1 E 100.0 1.3E-38 4.4E-43 240.9 7.7 84 81-166 4-87 (93)
6 1awc_A Protein (GA binding pro 100.0 3.3E-38 1.1E-42 244.9 7.9 94 82-177 1-98 (110)
7 2ypr_A Protein FEV; transcript 100.0 5.2E-38 1.8E-42 240.7 8.2 88 79-168 5-92 (102)
8 2dao_A Transcription factor ET 100.0 7.4E-38 2.5E-42 245.4 9.2 86 80-166 7-92 (118)
9 1pue_E Protein (transcription 100.0 1.3E-37 4.3E-42 233.7 8.8 84 82-167 2-88 (89)
10 1gvj_A C-ETS-1 protein, P54; t 100.0 1.2E-37 4.2E-42 251.6 7.2 100 79-180 37-140 (146)
11 4avp_A ETS translocation varia 100.0 2.5E-37 8.4E-42 238.4 8.2 86 80-167 10-95 (106)
12 2nny_A C-ETS-1 protein, P54; p 100.0 4.3E-37 1.5E-41 253.6 6.1 100 79-180 62-165 (171)
13 2lf8_A Transcription factor ET 100.0 1.5E-37 5.1E-42 246.6 0.0 86 80-166 3-88 (128)
14 1hbx_G ETS-domain protein ELK- 100.0 3.7E-36 1.3E-40 245.2 7.0 84 81-166 5-88 (157)
15 2ldu_A Heat shock factor prote 93.7 0.059 2E-06 41.6 4.0 54 88-145 24-78 (125)
16 3hts_B Heat shock transcriptio 93.2 0.11 3.8E-06 39.2 4.7 55 88-145 19-73 (102)
17 1hks_A Heat-shock transcriptio 91.8 0.11 3.7E-06 38.7 3.0 58 86-146 9-66 (106)
18 2dll_A Interferon regulatory f 73.4 2.4 8E-05 32.8 3.0 49 80-130 5-65 (121)
19 2irf_G IRF-2, interferon regul 56.3 12 0.00039 28.6 3.9 64 81-146 5-85 (113)
20 3qu6_A IRF3 protein; helix-tur 47.4 12 0.00041 28.8 2.7 62 81-144 8-85 (116)
21 3qu3_A IRF-7, interferon regul 28.7 36 0.0012 26.9 2.8 49 81-131 12-71 (137)
22 3f1p_B ARYL hydrocarbon recept 27.4 35 0.0012 22.2 2.2 37 87-128 3-39 (121)
23 1p6r_A Penicillinase repressor 27.4 1.3E+02 0.0045 19.6 5.4 44 116-162 25-69 (82)
24 2fu4_A Ferric uptake regulatio 27.3 53 0.0018 21.6 3.1 45 116-162 35-81 (83)
25 3olo_A Two-component sensor hi 21.2 1.1E+02 0.0039 18.9 3.7 37 86-127 13-49 (118)
26 1mzb_A Ferric uptake regulatio 20.2 1.1E+02 0.0039 22.3 4.0 46 116-163 36-83 (136)
No 1
>1yo5_C SAM pointed domain containing ETS transcription factor; protein-DNA complex, double helix, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.4.5.21
Probab=100.00 E-value=9.6e-41 Score=254.13 Aligned_cols=89 Identities=30% Similarity=0.518 Sum_probs=84.0
Q ss_pred CCCCCchHHhHHhhhCcCCCCCCeEEeeCCCeeEEEeChHHHHHHHhccCCCCCCcHHHHHHHHHHHhhcCeeEecc-cC
Q psy6350 79 SEGTPGTGAKRKSREDREYCPRYIKWTNRERGVFKLVDSKAVSRLWGLHKNKPDMNYETMGRALRSSVVLTRLRTKC-TQ 157 (189)
Q Consensus 79 ~~g~~l~~Flr~lLed~e~~~~~I~Wtdk~~geFk~vdpe~VArLWG~rKnkp~MtYeKmSRaLRyYY~kgIL~Kv~-Gq 157 (189)
.+..+||+||++||+|+++|++||+|+|+++|+|||+||++||+|||.+|||++||||||||||||||++|||+||. |+
T Consensus 8 ~~~i~LwqFL~eLL~d~~~~~~~I~W~~~~~g~Fkl~d~~~VArlWG~rKnkp~MnYeklSRaLRyYY~~~ii~Kv~~g~ 87 (97)
T 1yo5_C 8 SQPIHLWQFLKELLLKPHSYGRFIRWLNKEKGIFKIEDSAQVARLWGIRKNRPAMNYDKLSRSIRQYYKKGIIRKPDISQ 87 (97)
T ss_dssp -CCCCHHHHHHHHHHCHHHHTTTEEEEETTTTEEEESCHHHHHHHHHHHHTCTTCCHHHHHHHHHHTTTTTSEECCSSCC
T ss_pred CCeeEHHHHHHHHhcCcccCCCceEeecCCCCEEEecCHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhcCcEeeccCCc
Confidence 34589999999999998888999999999999999999999999999999999999999999999999999999997 89
Q ss_pred ceeEEecCcc
Q psy6350 158 KQTATRDVPL 167 (189)
Q Consensus 158 rltY~f~~~~ 167 (189)
|++|+|..||
T Consensus 88 r~vY~F~~~~ 97 (97)
T 1yo5_C 88 RLVYQFVHPI 97 (97)
T ss_dssp TTEEEESCC-
T ss_pred EEEEecCCCC
Confidence 9999999885
No 2
>3jtg_A ETS-related transcription factor ELF-3; ELF3, protein-DNA complex, type II TGF-beta receptor, activa alternative splicing, cytoplasm; HET: DNA; 2.20A {Mus musculus} SCOP: a.4.5.21
Probab=100.00 E-value=5.1e-40 Score=252.14 Aligned_cols=88 Identities=30% Similarity=0.401 Sum_probs=84.3
Q ss_pred CCCCCchHHhHHhhhCcCCCCCCeEEeeCCCeeEEEeChHHHHHHHhccCCCCCCcHHHHHHHHHHHhhcCeeEecccCc
Q psy6350 79 SEGTPGTGAKRKSREDREYCPRYIKWTNRERGVFKLVDSKAVSRLWGLHKNKPDMNYETMGRALRSSVVLTRLRTKCTQK 158 (189)
Q Consensus 79 ~~g~~l~~Flr~lLed~e~~~~~I~Wtdk~~geFk~vdpe~VArLWG~rKnkp~MtYeKmSRaLRyYY~kgIL~Kv~Gqr 158 (189)
++|++||+||++||+|+++++++|+|+|+++|+|||+||++||+|||++|||++||||||||||||||++|||+||.|+|
T Consensus 2 ~r~~~LwqFL~~LL~d~~~~~~~I~W~~~~~g~Fkl~dp~~VArlWG~rKnkp~MnYeKlSRaLRyYy~~~ii~Kv~G~r 81 (103)
T 3jtg_A 2 PRGTHLWEFIRDILIHPELNEGLMKWENRHEGVFKFLRSEAVAQLWGQKKKNSNMTYEKLSRAMRYYYKREILERVDGRR 81 (103)
T ss_dssp --CCSHHHHHHHHHTCGGGCSSCEEEEETTTTEEEESSHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHTTSBCCCTTCT
T ss_pred CCcccHHHHHHHHHcCcccCCCccccccCCCceEEecCHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCcEEecCCce
Confidence 46899999999999999889999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEecCc
Q psy6350 159 QTATRDVP 166 (189)
Q Consensus 159 ltY~f~~~ 166 (189)
++|+|..+
T Consensus 82 ~vY~F~~~ 89 (103)
T 3jtg_A 82 LVYKFGKN 89 (103)
T ss_dssp TEEEBCTT
T ss_pred EEEEeCCC
Confidence 99999987
No 3
>1wwx_A E74-like factor 5 ESE-2B; DNA binding, transcriptional activation and repression, structural genomics; NMR {Homo sapiens} SCOP: a.4.5.21
Probab=100.00 E-value=8.6e-39 Score=247.13 Aligned_cols=87 Identities=25% Similarity=0.368 Sum_probs=82.9
Q ss_pred CCCCCchHHhHHhhhCcCCCCCCeEEeeCCCeeEEEeChHHHHHHHhccCCCCCCcHHHHHHHHHHHhhcCeeEecccCc
Q psy6350 79 SEGTPGTGAKRKSREDREYCPRYIKWTNRERGVFKLVDSKAVSRLWGLHKNKPDMNYETMGRALRSSVVLTRLRTKCTQK 158 (189)
Q Consensus 79 ~~g~~l~~Flr~lLed~e~~~~~I~Wtdk~~geFk~vdpe~VArLWG~rKnkp~MtYeKmSRaLRyYY~kgIL~Kv~Gqr 158 (189)
++..+||+||++||.|++++++||+|+|+++|+|||+||++||+|||.+|||++||||||||||||||++|||+|| ++|
T Consensus 6 ~g~i~LwqFL~eLL~d~~~~~~~I~W~~~~~g~Fkl~d~e~VArlWG~rKnkp~MnYeKlSRaLRyYY~~~ii~Kv-~~r 84 (107)
T 1wwx_A 6 SGSSHLWEFVRDLLLSPEENCGILEWEDREQGIFRVVKSEALAKMWGQRKKNDRMTYEKLSRALRYYYKTGILERV-DRR 84 (107)
T ss_dssp CSSCCHHHHHHHHHHCTTTCCSCCEEEETTTTEEECSCHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHTSEECC-SSS
T ss_pred CCcEEHHHHHHHHHcCcccCCCcEEeecCCCCEEEecCHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhcCcEEec-cce
Confidence 4458999999999999988999999999999999999999999999999999999999999999999999999999 699
Q ss_pred eeEEecCc
Q psy6350 159 QTATRDVP 166 (189)
Q Consensus 159 ltY~f~~~ 166 (189)
++|+|...
T Consensus 85 lvY~F~~~ 92 (107)
T 1wwx_A 85 LVYKFGKN 92 (107)
T ss_dssp SEEEECSS
T ss_pred EEEEeCCc
Confidence 99999865
No 4
>1fli_A FLI-1; transcription/DNA; NMR {Homo sapiens} SCOP: a.4.5.21
Probab=100.00 E-value=5.3e-39 Score=244.99 Aligned_cols=88 Identities=26% Similarity=0.345 Sum_probs=81.9
Q ss_pred CCCCCchHHhHHhhhCcCCCCCCeEEeeCCCeeEEEeChHHHHHHHhccCCCCCCcHHHHHHHHHHHhhcCeeEecccCc
Q psy6350 79 SEGTPGTGAKRKSREDREYCPRYIKWTNRERGVFKLVDSKAVSRLWGLHKNKPDMNYETMGRALRSSVVLTRLRTKCTQK 158 (189)
Q Consensus 79 ~~g~~l~~Flr~lLed~e~~~~~I~Wtdk~~geFk~vdpe~VArLWG~rKnkp~MtYeKmSRaLRyYY~kgIL~Kv~Gqr 158 (189)
++..+||+||++||+|+ .+.+||+|+++ +|+|||+||++||+|||.+|||++||||||||||||||++|||+||.|+|
T Consensus 3 sg~~~LwqFL~~LL~d~-~~~~~I~W~~~-~g~Fklvd~e~VArlWG~rK~kp~MnYeklSRaLRyYY~k~i~~Kv~gkr 80 (98)
T 1fli_A 3 SGQIQLWQFLLELLSDS-ANASCITWEGT-NGEFKMTDPDEVARRWGERKSKPNMNYDKLSRALRYYYDKNIMTKVHGKR 80 (98)
T ss_dssp CSSCCSHHHHHHHHHTC-SSCSSEECTTS-SSSCEECCHHHHHHHHHHHTCCTTCSSHHHHHHHHHHHHTTSCCCBGGGS
T ss_pred CCceeHHHHHHHHhcCc-ccCCCeEEeCC-CCEEEEcCHHHHHHHHHhccCCCCcCHHHHHHHHHHHHHcCcEeecCCCe
Confidence 44589999999999997 47899999995 79999999999999999999999999999999999999999999999999
Q ss_pred eeEEecCccc
Q psy6350 159 QTATRDVPLV 168 (189)
Q Consensus 159 ltY~f~~~~~ 168 (189)
++|+|+..-.
T Consensus 81 ~vY~F~~~~~ 90 (98)
T 1fli_A 81 YAYKFDFHGI 90 (98)
T ss_dssp SBCCCCTTSC
T ss_pred EEEEecCccH
Confidence 9999986543
No 5
>1bc8_C SAP-1, protein (SAP-1 ETS domain); DNA-binding domain, winged helix-turn-helix, DNA-binding specificity, transcription/DNA complex; HET: DNA; 1.93A {Homo sapiens} SCOP: a.4.5.21 PDB: 1bc7_C* 1k6o_A 1dux_C*
Probab=100.00 E-value=1.3e-38 Score=240.87 Aligned_cols=84 Identities=31% Similarity=0.439 Sum_probs=80.1
Q ss_pred CCCchHHhHHhhhCcCCCCCCeEEeeCCCeeEEEeChHHHHHHHhccCCCCCCcHHHHHHHHHHHhhcCeeEecccCcee
Q psy6350 81 GTPGTGAKRKSREDREYCPRYIKWTNRERGVFKLVDSKAVSRLWGLHKNKPDMNYETMGRALRSSVVLTRLRTKCTQKQT 160 (189)
Q Consensus 81 g~~l~~Flr~lLed~e~~~~~I~Wtdk~~geFk~vdpe~VArLWG~rKnkp~MtYeKmSRaLRyYY~kgIL~Kv~Gqrlt 160 (189)
..+||+||++||+|++ |++||+|+|++ |+|||+||++||+|||.+|||++||||||||||||||++|||+||.|++++
T Consensus 4 ~i~Lw~FL~~LL~d~~-~~~~I~W~~~~-g~Fkl~d~~~VArlWG~rKnk~~MnYeklSRaLRyYY~~~il~Kv~g~r~v 81 (93)
T 1bc8_C 4 AITLWQFLLQLLQKPQ-NKHMICWTSND-GQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALRYYYVKNIIKKVNGQKFV 81 (93)
T ss_dssp CCCHHHHHHHHTTCGG-GTTTSEECSSS-SEEECTTHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHTSEEECTTSTTE
T ss_pred cccHHHHHHHHhcCcc-cCCceEEeCCC-CEEEecCHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhcCcEEecCCCeEE
Confidence 4799999999999985 89999999985 899999999999999999999999999999999999999999999999999
Q ss_pred EEecCc
Q psy6350 161 ATRDVP 166 (189)
Q Consensus 161 Y~f~~~ 166 (189)
|+|...
T Consensus 82 Y~F~~~ 87 (93)
T 1bc8_C 82 YKFVSY 87 (93)
T ss_dssp EEETTT
T ss_pred EEeCCC
Confidence 999753
No 6
>1awc_A Protein (GA binding protein alpha); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: a.4.5.21
Probab=100.00 E-value=3.3e-38 Score=244.88 Aligned_cols=94 Identities=26% Similarity=0.301 Sum_probs=87.5
Q ss_pred CCchHHhHHhhhCcCCCCCCeEEeeCCCeeEEEeChHHHHHHHhccCCCCCCcHHHHHHHHHHHhhcCeeEecccCceeE
Q psy6350 82 TPGTGAKRKSREDREYCPRYIKWTNRERGVFKLVDSKAVSRLWGLHKNKPDMNYETMGRALRSSVVLTRLRTKCTQKQTA 161 (189)
Q Consensus 82 ~~l~~Flr~lLed~e~~~~~I~Wtdk~~geFk~vdpe~VArLWG~rKnkp~MtYeKmSRaLRyYY~kgIL~Kv~GqrltY 161 (189)
.+||+||++||+|++ +++||+|+|+ +|+|||+||++||++||.+|||++||||||||||||||++|||+||.|++++|
T Consensus 1 i~LwqFLleLL~d~~-~~~~I~W~~~-~geFkl~d~e~VArlWG~rKnkp~MnYeKlSRaLRyYY~k~ii~Kv~GkrlvY 78 (110)
T 1awc_A 1 IQLWQFLLELLTDKD-ARDCISWVGD-EGEFKLNQPELVAQKWGQRKNKPTMNYEKLSRALRYYYDGDMICKVQGKRFVY 78 (110)
T ss_dssp CCHHHHHHHHHTCTT-TTTTSEECSS-SSEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHGGGGSSSEEECTTSTTEE
T ss_pred CcHHHHHHHHhcCcc-cCCceEEeCC-CCEEEecCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCEeeccCCeeEE
Confidence 479999999999985 7999999997 69999999999999999999999999999999999999999999999999999
Q ss_pred EecCc----cccccchhhee
Q psy6350 162 TRDVP----LVFSSIMGHVL 177 (189)
Q Consensus 162 ~f~~~----~~~~~~~~~~~ 177 (189)
+|... +|+++...|.+
T Consensus 79 ~F~~~~~~l~g~~~~~~~~~ 98 (110)
T 1awc_A 79 KFVCDLKTLIGYSAAELNRL 98 (110)
T ss_dssp EECSCHHHHTSSCHHHHHHH
T ss_pred ecCCCHHHHhCCCHHHHHHH
Confidence 99755 78888877765
No 7
>2ypr_A Protein FEV; transcription; 2.64A {Homo sapiens} PDB: 1fli_A
Probab=100.00 E-value=5.2e-38 Score=240.73 Aligned_cols=88 Identities=28% Similarity=0.359 Sum_probs=81.2
Q ss_pred CCCCCchHHhHHhhhCcCCCCCCeEEeeCCCeeEEEeChHHHHHHHhccCCCCCCcHHHHHHHHHHHhhcCeeEecccCc
Q psy6350 79 SEGTPGTGAKRKSREDREYCPRYIKWTNRERGVFKLVDSKAVSRLWGLHKNKPDMNYETMGRALRSSVVLTRLRTKCTQK 158 (189)
Q Consensus 79 ~~g~~l~~Flr~lLed~e~~~~~I~Wtdk~~geFk~vdpe~VArLWG~rKnkp~MtYeKmSRaLRyYY~kgIL~Kv~Gqr 158 (189)
++..+||+||++||+|+ .+.+||+|++ ++|+|||+||++||+|||++||||+||||||||||||||++|||+||.|+|
T Consensus 5 ~g~i~LwqFLl~LL~d~-~~~~~I~W~~-~~g~Fkl~dp~~VArlWG~rKnkp~MnYeKlSRaLRyYY~k~ii~Kv~Gkr 82 (102)
T 2ypr_A 5 SGQIQLWQFLLELLADR-ANAGCIAWEG-GHGEFKLTDPDEVARRWGERKSKPNMNYDKLSRALRYYYDKNIMSKVHGKR 82 (102)
T ss_dssp CSSCCHHHHHHHHHTCG-GGTTTCEECS-STTEEECSSHHHHHHHHHHHTTCTTCCHHHHHHHHTHHHHTTSEEECSSCS
T ss_pred CCcEeHHHHHHHHhcCC-CCCCcccccC-CCceEEecChHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCcEEecCCCe
Confidence 44589999999999997 4779999997 479999999999999999999999999999999999999999999999999
Q ss_pred eeEEecCccc
Q psy6350 159 QTATRDVPLV 168 (189)
Q Consensus 159 ltY~f~~~~~ 168 (189)
++|+|+....
T Consensus 83 ~vYkF~~~~l 92 (102)
T 2ypr_A 83 YAYRFDFQGL 92 (102)
T ss_dssp SEEEECHHHH
T ss_pred EEEEeCCCcH
Confidence 9999976533
No 8
>2dao_A Transcription factor ETV6; ETS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=100.00 E-value=7.4e-38 Score=245.44 Aligned_cols=86 Identities=29% Similarity=0.456 Sum_probs=81.6
Q ss_pred CCCCchHHhHHhhhCcCCCCCCeEEeeCCCeeEEEeChHHHHHHHhccCCCCCCcHHHHHHHHHHHhhcCeeEecccCce
Q psy6350 80 EGTPGTGAKRKSREDREYCPRYIKWTNRERGVFKLVDSKAVSRLWGLHKNKPDMNYETMGRALRSSVVLTRLRTKCTQKQ 159 (189)
Q Consensus 80 ~g~~l~~Flr~lLed~e~~~~~I~Wtdk~~geFk~vdpe~VArLWG~rKnkp~MtYeKmSRaLRyYY~kgIL~Kv~Gqrl 159 (189)
+..+||+||++||+|+ .+.+||+|+|++.|+|||+||++||+|||.+|||++||||||||||||||++|||+||.|+|+
T Consensus 7 g~~~LwqFLleLL~d~-~~~~~I~W~~~~~g~Fklvdp~~VArlWG~rKnkp~MnYeKLSRaLRyYY~k~ii~Kv~G~r~ 85 (118)
T 2dao_A 7 GCRLLWDYVYQLLSDS-RYENFIRWEDKESKIFRIVDPNGLARLWGNHKNRTNMTYEKMSRALRHYYKLNIIRKEPGQRL 85 (118)
T ss_dssp CCCCHHHHHHHHHHCG-GGTTTEEEEEGGGTEEEESCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHTSEECCSSSSS
T ss_pred cchHHHHHHHHHhCCc-ccCCceEeeCCCCCeEEEeCHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCCEEeccCCeE
Confidence 3478999999999998 578999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEecCc
Q psy6350 160 TATRDVP 166 (189)
Q Consensus 160 tY~f~~~ 166 (189)
+|+|...
T Consensus 86 vY~F~~~ 92 (118)
T 2dao_A 86 LFRFMKT 92 (118)
T ss_dssp EEEECSC
T ss_pred EEEecCC
Confidence 9999743
No 9
>1pue_E Protein (transcription factor PU.1 (TF PU.1)); complex (transcription regulating/DNA), oncogene, transforming protein, DNA- binding, activator; HET: DNA; 2.10A {Mus musculus} SCOP: a.4.5.21
Probab=100.00 E-value=1.3e-37 Score=233.69 Aligned_cols=84 Identities=23% Similarity=0.330 Sum_probs=79.0
Q ss_pred CCchHHhHHhhhCcCCCCCCeEEeeCCCeeEEEe--ChHHHHHHHhccC-CCCCCcHHHHHHHHHHHhhcCeeEecccCc
Q psy6350 82 TPGTGAKRKSREDREYCPRYIKWTNRERGVFKLV--DSKAVSRLWGLHK-NKPDMNYETMGRALRSSVVLTRLRTKCTQK 158 (189)
Q Consensus 82 ~~l~~Flr~lLed~e~~~~~I~Wtdk~~geFk~v--dpe~VArLWG~rK-nkp~MtYeKmSRaLRyYY~kgIL~Kv~Gqr 158 (189)
.+||+||++||+|+ ++++||+|+|+++|+|+|+ ||++||++||.+| |+|+||||||||||||||++|||+||. +|
T Consensus 2 i~LwqFL~~LL~d~-~~~~~I~W~~~~~g~Fk~~~~~~e~VArlWG~rK~Nk~~MnYeKlSRaLRyYY~~~ii~Kv~-~r 79 (89)
T 1pue_E 2 IRLYQFLLDLLRSG-DMKDSIWWVDKDKGTFQFSSKHKEALAHRWGIQKGNRKKMTYEKMARALRNYGKTGEVKKVK-KK 79 (89)
T ss_dssp CCHHHHHHHHHHHT-CCTTTEEEEETTTTEEEECTTTHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHHSSEEECS-ST
T ss_pred ccHHHHHHHHhcCc-ccCCceEeecCCCcEEEEecCChHHHHHHhhcccCCCCCcCHHHHHHHHHHHHHcCceeecc-ce
Confidence 57999999999998 5899999999999999997 7999999999999 789999999999999999999999996 89
Q ss_pred eeEEecCcc
Q psy6350 159 QTATRDVPL 167 (189)
Q Consensus 159 ltY~f~~~~ 167 (189)
++|+|...+
T Consensus 80 ~vY~F~~~~ 88 (89)
T 1pue_E 80 LTYQFSGEV 88 (89)
T ss_dssp TEEEECTTC
T ss_pred EEEeecccc
Confidence 999998763
No 10
>1gvj_A C-ETS-1 protein, P54; transcription, autoinhibition, ETS domain; 1.53A {Homo sapiens} SCOP: a.4.5.21 PDB: 1md0_A 1r36_A 1k78_B 1k79_A* 1k7a_A* 2stt_A* 2stw_A*
Probab=100.00 E-value=1.2e-37 Score=251.55 Aligned_cols=100 Identities=28% Similarity=0.370 Sum_probs=92.1
Q ss_pred CCCCCchHHhHHhhhCcCCCCCCeEEeeCCCeeEEEeChHHHHHHHhccCCCCCCcHHHHHHHHHHHhhcCeeEecccCc
Q psy6350 79 SEGTPGTGAKRKSREDREYCPRYIKWTNRERGVFKLVDSKAVSRLWGLHKNKPDMNYETMGRALRSSVVLTRLRTKCTQK 158 (189)
Q Consensus 79 ~~g~~l~~Flr~lLed~e~~~~~I~Wtdk~~geFk~vdpe~VArLWG~rKnkp~MtYeKmSRaLRyYY~kgIL~Kv~Gqr 158 (189)
++..+||+||++||+|+ +|++||+|+|+ .|+||++||++||+|||.+|||++||||||||||||||++|||+||.|+|
T Consensus 37 sg~i~LwqFLleLL~d~-~~~~~I~Wt~~-~~eFklvdpe~VArlWG~rKnkp~MnYeKLSRaLRyYY~k~ii~Kv~Gkr 114 (146)
T 1gvj_A 37 SGPIQLWQFLLELLTDK-SCQSFISWTGD-GWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKR 114 (146)
T ss_dssp CCSCCHHHHHHHHHTCG-GGTTTSEECSS-TTEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHTTSEEECTTSS
T ss_pred CCceeHHHHHHHHhcCc-ccCCceEeeCC-CCEEEeCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCcEEecCCCe
Confidence 34589999999999997 69999999998 78999999999999999999999999999999999999999999999999
Q ss_pred eeEEecCc----cccccchhheeeee
Q psy6350 159 QTATRDVP----LVFSSIMGHVLTSV 180 (189)
Q Consensus 159 ltY~f~~~----~~~~~~~~~~~~~~ 180 (189)
++|+|... +++++...|.++.|
T Consensus 115 lvY~F~~~~~~l~g~~~~e~~~~~~~ 140 (146)
T 1gvj_A 115 YVYRFVCDLQSLLGYTPEELHAMLDV 140 (146)
T ss_dssp SEEEECSCHHHHHSCCHHHHHHHTTC
T ss_pred EEEEeccchHhhcCCCHHHHHHHhCC
Confidence 99999654 78888888877654
No 11
>4avp_A ETS translocation variant 1; transcription, transcriptional activation and repression, DN binding protein, E twenty-SIX, erwing sarcoma; 1.82A {Homo sapiens} PDB: 4b06_A
Probab=100.00 E-value=2.5e-37 Score=238.38 Aligned_cols=86 Identities=24% Similarity=0.375 Sum_probs=80.9
Q ss_pred CCCCchHHhHHhhhCcCCCCCCeEEeeCCCeeEEEeChHHHHHHHhccCCCCCCcHHHHHHHHHHHhhcCeeEecccCce
Q psy6350 80 EGTPGTGAKRKSREDREYCPRYIKWTNRERGVFKLVDSKAVSRLWGLHKNKPDMNYETMGRALRSSVVLTRLRTKCTQKQ 159 (189)
Q Consensus 80 ~g~~l~~Flr~lLed~e~~~~~I~Wtdk~~geFk~vdpe~VArLWG~rKnkp~MtYeKmSRaLRyYY~kgIL~Kv~Gqrl 159 (189)
+..+||+||++||+|++ +++||+|+|++ ++|+|+||++||+|||++|||++||||||||||||||++|||+||.|+|+
T Consensus 10 g~i~LwqFL~~LL~d~~-~~~~I~W~~~~-~~Fkl~dp~~VA~lWG~rKnkp~M~YeKlSRaLRyYY~kgii~Kv~G~r~ 87 (106)
T 4avp_A 10 GSLQLWQFLVALLDDPS-NSHFIAWTGRG-MEFKLIEPEEVARRWGIQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERY 87 (106)
T ss_dssp -CCCHHHHHHHHHHCGG-GTTTEEECSST-TEEEESSHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEECTTCSS
T ss_pred CcEeHHHHHHHHHcCcc-CCCCCcccCCC-ceEEecCHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCeEEecCCCeE
Confidence 34799999999999984 79999999995 79999999999999999999999999999999999999999999999999
Q ss_pred eEEecCcc
Q psy6350 160 TATRDVPL 167 (189)
Q Consensus 160 tY~f~~~~ 167 (189)
+|+|....
T Consensus 88 vYkF~~~p 95 (106)
T 4avp_A 88 VYKFVCDP 95 (106)
T ss_dssp EEEECCSH
T ss_pred EEEecCCH
Confidence 99998763
No 12
>2nny_A C-ETS-1 protein, P54; protein-DNA complex, transcription/DNA complex; 2.58A {Homo sapiens} PDB: 3ri4_A 3mfk_A 1mdm_B
Probab=100.00 E-value=4.3e-37 Score=253.59 Aligned_cols=100 Identities=27% Similarity=0.329 Sum_probs=92.1
Q ss_pred CCCCCchHHhHHhhhCcCCCCCCeEEeeCCCeeEEEeChHHHHHHHhccCCCCCCcHHHHHHHHHHHhhcCeeEecccCc
Q psy6350 79 SEGTPGTGAKRKSREDREYCPRYIKWTNRERGVFKLVDSKAVSRLWGLHKNKPDMNYETMGRALRSSVVLTRLRTKCTQK 158 (189)
Q Consensus 79 ~~g~~l~~Flr~lLed~e~~~~~I~Wtdk~~geFk~vdpe~VArLWG~rKnkp~MtYeKmSRaLRyYY~kgIL~Kv~Gqr 158 (189)
.+..+||+||++||+|+ +|++||+|+|+ .|+|||+||++||||||.||||++||||||||||||||++|||+||.|+|
T Consensus 62 sg~i~LwqFLleLL~d~-~~~~~I~Wt~~-~~eFklvdpe~VArlWG~rKnkp~MnYeKLSRaLRyYY~k~ii~Kv~Gkr 139 (171)
T 2nny_A 62 SGPIQLWQFLLELLTDK-SSQSFISWTGD-GWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKR 139 (171)
T ss_dssp CSSCCHHHHHHHHHTCT-GGGGTCEECSS-TTEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHGGGTTTSEEECTTST
T ss_pred CCceeHHHHHHHHhcCc-ccCCceEeeCC-CCEEEeCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCcEeecCCCe
Confidence 34589999999999997 69999999998 78999999999999999999999999999999999999999999999999
Q ss_pred eeEEecCc----cccccchhheeeee
Q psy6350 159 QTATRDVP----LVFSSIMGHVLTSV 180 (189)
Q Consensus 159 ltY~f~~~----~~~~~~~~~~~~~~ 180 (189)
++|+|... +++++...|.++.|
T Consensus 140 lvY~F~~d~~~l~g~~~~el~~~~~~ 165 (171)
T 2nny_A 140 YVYRFVSDLQSLLGYTPEELHAMLDV 165 (171)
T ss_dssp TEEEECTTHHHHHCCCHHHHHHHTTC
T ss_pred EEEEeCCChHHHcCCCHHHHHHHhcC
Confidence 99999654 78898888876654
No 13
>2lf8_A Transcription factor ETV6; auto-inhibition; NMR {Mus musculus}
Probab=100.00 E-value=1.5e-37 Score=246.55 Aligned_cols=86 Identities=29% Similarity=0.454 Sum_probs=81.3
Q ss_pred CCCCchHHhHHhhhCcCCCCCCeEEeeCCCeeEEEeChHHHHHHHhccCCCCCCcHHHHHHHHHHHhhcCeeEecccCce
Q psy6350 80 EGTPGTGAKRKSREDREYCPRYIKWTNRERGVFKLVDSKAVSRLWGLHKNKPDMNYETMGRALRSSVVLTRLRTKCTQKQ 159 (189)
Q Consensus 80 ~g~~l~~Flr~lLed~e~~~~~I~Wtdk~~geFk~vdpe~VArLWG~rKnkp~MtYeKmSRaLRyYY~kgIL~Kv~Gqrl 159 (189)
+..+||+||++||+|+ .+.+||+|+|++.|+|||+||++||+|||.+|||++||||||||||||||++|||+||.|+|+
T Consensus 3 ~~~~LWqFLleLL~d~-~~~~~I~Wt~k~~geFklvdpe~VArlWG~rKnkp~MnYeKLSRALRyYY~k~Ii~Kv~Gqrl 81 (128)
T 2lf8_A 3 HMRLLWDYVYQLLSDS-RYENFIRWEDKESKIFRIVDPNGLARLWGNHKNRTNMTYEKMSRALRHYYKLNIIRKEPGQRL 81 (128)
Confidence 3478999999999997 578999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEecCc
Q psy6350 160 TATRDVP 166 (189)
Q Consensus 160 tY~f~~~ 166 (189)
+|+|...
T Consensus 82 vY~F~~~ 88 (128)
T 2lf8_A 82 LFRFMKT 88 (128)
Confidence 9999644
No 14
>1hbx_G ETS-domain protein ELK-4; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: a.4.5.21
Probab=100.00 E-value=3.7e-36 Score=245.16 Aligned_cols=84 Identities=31% Similarity=0.427 Sum_probs=80.0
Q ss_pred CCCchHHhHHhhhCcCCCCCCeEEeeCCCeeEEEeChHHHHHHHhccCCCCCCcHHHHHHHHHHHhhcCeeEecccCcee
Q psy6350 81 GTPGTGAKRKSREDREYCPRYIKWTNRERGVFKLVDSKAVSRLWGLHKNKPDMNYETMGRALRSSVVLTRLRTKCTQKQT 160 (189)
Q Consensus 81 g~~l~~Flr~lLed~e~~~~~I~Wtdk~~geFk~vdpe~VArLWG~rKnkp~MtYeKmSRaLRyYY~kgIL~Kv~Gqrlt 160 (189)
..+||+||++||+|++ |++||+|+|+ +|+|||+||++||+|||.||||++||||||||||||||++|||+||.|+|++
T Consensus 5 ~i~LWqFLleLL~d~~-~~~~I~Wt~~-~geFklvdpe~VArLWG~rKnkp~MnYeKLSRALRyYY~k~Ii~KV~Gqrlv 82 (157)
T 1hbx_G 5 AITLWQFLLQLLQKPQ-NKHMICWTSN-DGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALRYYYVKNIIKKVNGQKFV 82 (157)
T ss_dssp CCCHHHHTTTSSSCGG-GTTTEEECSS-SSCEEETTHHHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEECSSCTTE
T ss_pred cccHHHHHHHHhcCcc-cCCceEEeCC-CCEEEecCcHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCcEEecCCCeEE
Confidence 4789999999999985 8999999998 5899999999999999999999999999999999999999999999999999
Q ss_pred EEecCc
Q psy6350 161 ATRDVP 166 (189)
Q Consensus 161 Y~f~~~ 166 (189)
|+|...
T Consensus 83 YkF~~~ 88 (157)
T 1hbx_G 83 YKFVSY 88 (157)
T ss_dssp EEESST
T ss_pred EeeCCC
Confidence 999754
No 15
>2ldu_A Heat shock factor protein 1; structural genomics, northeast structural genomics consortiu DNA-binding, PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=93.74 E-value=0.059 Score=41.59 Aligned_cols=54 Identities=17% Similarity=0.177 Sum_probs=40.4
Q ss_pred hHHhhhCcCCCCCCeEEeeCCCeeEEEeChHHHHHH-HhccCCCCCCcHHHHHHHHHHH
Q psy6350 88 KRKSREDREYCPRYIKWTNRERGVFKLVDSKAVSRL-WGLHKNKPDMNYETMGRALRSS 145 (189)
Q Consensus 88 lr~lLed~e~~~~~I~Wtdk~~geFk~vdpe~VArL-WG~rKnkp~MtYeKmSRaLRyY 145 (189)
|.++|+|++ +.++|+|...++ .|.+.|+++.++. -- +--.--+|..+-|-|-.|
T Consensus 24 L~~ml~d~~-~~~iI~W~~~G~-sFvV~d~~~F~~~vLp--~yFkh~nfsSFvRQLN~Y 78 (125)
T 2ldu_A 24 LWTLVSDPD-TDALICWSPSGN-SFHVFDQGQFAKEVLP--KYFKHNNMASFVRQLNMY 78 (125)
T ss_dssp HHHHHHCTT-TTTTEEECTTSS-EEEECCHHHHHHHHHH--HHSSCCCHHHHHHHHHHT
T ss_pred HHHHhhCCC-CCCEEEEcCCCC-EEEEeCHHHHHHHHhH--HhcCCCcHHHHHHHhccc
Confidence 456788974 689999999766 7999999888752 22 122346899999998776
No 16
>3hts_B Heat shock transcription factor; transcription regulation, DNA-binding protein, complex (WING helix_TURN_ helix-DNA); 1.75A {Kluyveromyces lactis} SCOP: a.4.5.22 PDB: 2hts_A 1fyk_A* 1fym_A 1fyl_A 3hsf_A 1fbu_A 1fbs_A 1fbq_A
Probab=93.25 E-value=0.11 Score=39.16 Aligned_cols=55 Identities=13% Similarity=0.170 Sum_probs=40.0
Q ss_pred hHHhhhCcCCCCCCeEEeeCCCeeEEEeChHHHHHHHhccCCCCCCcHHHHHHHHHHH
Q psy6350 88 KRKSREDREYCPRYIKWTNRERGVFKLVDSKAVSRLWGLHKNKPDMNYETMGRALRSS 145 (189)
Q Consensus 88 lr~lLed~e~~~~~I~Wtdk~~geFk~vdpe~VArLWG~rKnkp~MtYeKmSRaLRyY 145 (189)
|.++|+|++ ..++|+|...++ .|.|.|+++.++.==. +--..-+|..+-|-|-.|
T Consensus 19 L~~ml~d~~-~~~iI~W~~~G~-sfiI~d~~~F~~~VLp-~yFkh~nfsSFvRQLN~Y 73 (102)
T 3hts_B 19 LWSMVNDKS-NEKFIHWSTSGE-SIVVPNRERFVQEVLP-KYFKHSNFASFVRQLNMY 73 (102)
T ss_dssp HHHHHHCGG-GTTTSEECTTSC-SEEESCHHHHHHHTHH-HHCSSCCHHHHHHHHHHT
T ss_pred HHHHhcCCC-CCCEEEEeCCCC-EEEEcCHHHHHHHHHH-HhcCCCcHHHHHHHhhcC
Confidence 456788974 679999998765 6999999888753111 123457889999988776
No 17
>1hks_A Heat-shock transcription factor; transcription regulation; NMR {Drosophila melanogaster} SCOP: a.4.5.22 PDB: 1hkt_A
Probab=91.84 E-value=0.11 Score=38.72 Aligned_cols=58 Identities=17% Similarity=0.179 Sum_probs=42.2
Q ss_pred HHhHHhhhCcCCCCCCeEEeeCCCeeEEEeChHHHHHHHhccCCCCCCcHHHHHHHHHHHh
Q psy6350 86 GAKRKSREDREYCPRYIKWTNRERGVFKLVDSKAVSRLWGLHKNKPDMNYETMGRALRSSV 146 (189)
Q Consensus 86 ~Flr~lLed~e~~~~~I~Wtdk~~geFk~vdpe~VArLWG~rKnkp~MtYeKmSRaLRyYY 146 (189)
.=|.++|+|++ +.++|+|...++ .|.|.|+++.++.-= -+--..-+|..+-|-|-.|=
T Consensus 9 ~KL~~mv~d~~-~~~iI~W~~~G~-sFvI~d~~~F~~~vL-p~yFkh~n~~SFvRQLN~YG 66 (106)
T 1hks_A 9 AKLWRLVDDAD-TNRLICWTKDGQ-SFVIQNQAQFAKELL-PLNYKHNNMASFIRQLNMYG 66 (106)
T ss_dssp HHHHHHHSSST-TTTTSEESTTTS-CEECSCCSTTTTTTS-TTTTSCCCHHHHHHHHHHHC
T ss_pred HHHHHHhcCCC-CCCEEEEeCCCC-EEEECCHHHHHHHHh-HHhcCCCcHHHHHHhhhcCC
Confidence 34567888974 689999999766 699999987765311 12234568999999998774
No 18
>2dll_A Interferon regulatory factor 4; IRF domain, NF-EM5, multiple myeloma oncogene 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.42 E-value=2.4 Score=32.75 Aligned_cols=49 Identities=20% Similarity=0.361 Sum_probs=39.1
Q ss_pred CCCCchHHhHHhhhCcCCCCCCeEEeeCCCeeEEEeC------------hHHHHHHHhccCCC
Q psy6350 80 EGTPGTGAKRKSREDREYCPRYIKWTNRERGVFKLVD------------SKAVSRLWGLHKNK 130 (189)
Q Consensus 80 ~g~~l~~Flr~lLed~e~~~~~I~Wtdk~~geFk~vd------------pe~VArLWG~rKnk 130 (189)
..++|-.+|.+-++.. .|++ ++|.|+++..|+|-= -..+=+.|...+++
T Consensus 5 ~~~~lr~WL~~qidsg-~ypG-L~W~d~ekt~FrIPWkH~~r~~~~~~~D~~iFkaWA~~~Gk 65 (121)
T 2dll_A 5 SSGKLRQWLIDQIDSG-KYPG-LVWENEEKSIFRIPWKHAGKQDYNREEDAALFKAWALFKGK 65 (121)
T ss_dssp SSCCHHHHHHHHHHHT-CSSS-CEESSSSSCEEEEECCCCCCSSSCHHHHTHHHHHHHHHHSC
T ss_pred CccchHHHHHHHhccC-CCCC-ceEecCCCCEEEeeCccCCcCCCCcchhhHHHHHHHHHcCC
Confidence 3477889999999996 6876 899999999999831 14566889888886
No 19
>2irf_G IRF-2, interferon regulatory factor 2; transcription factor, IFN induction, IRF family, gene regulation/DNA complex; HET: DNA 5IU; 2.20A {Mus musculus} SCOP: a.4.5.23 PDB: 1irf_A 1irg_A 1if1_A*
Probab=56.34 E-value=12 Score=28.61 Aligned_cols=64 Identities=19% Similarity=0.359 Sum_probs=45.3
Q ss_pred CCCchHHhHHhhhCcCCCCCCeEEeeCCCeeEEEe-----------C-hHHHHHHHhccCCCC-----CCcHHHHHHHHH
Q psy6350 81 GTPGTGAKRKSREDREYCPRYIKWTNRERGVFKLV-----------D-SKAVSRLWGLHKNKP-----DMNYETMGRALR 143 (189)
Q Consensus 81 g~~l~~Flr~lLed~e~~~~~I~Wtdk~~geFk~v-----------d-pe~VArLWG~rKnkp-----~MtYeKmSRaLR 143 (189)
..+|-.+|.+.++.. .|+ -++|+|+++..|+|= + -.++=+.|..++++- .-++-+.=+-+|
T Consensus 5 r~rlrpWL~~qi~sg-~yp-GL~W~d~~kt~FrIPWkHa~r~~~~~e~D~~IFkaWA~~~Gk~~~g~d~~dp~~WK~nfR 82 (113)
T 2irf_G 5 RMRMRPWLEEQINSN-TIP-GLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAIHTGKHQPGIDKPDPKTWKANFR 82 (113)
T ss_dssp CCCHHHHHHHHHHTT-CST-TCEEEETTTTEEEEECCCTTSTTCCHHHHSHHHHHHHHHTTSCCTTTSCCCHHHHHHHHH
T ss_pred ccchHHHHHHHhccC-CCC-CceEEcCCCCEEEEeeeeCCcCCccccchhHHHHHHHHHhCCCCCCCCCCChhHHHHHHH
Confidence 466788999999996 576 679999999999982 1 245668899888862 235555544444
Q ss_pred HHh
Q psy6350 144 SSV 146 (189)
Q Consensus 144 yYY 146 (189)
.=-
T Consensus 83 cAL 85 (113)
T 2irf_G 83 CAM 85 (113)
T ss_dssp HHH
T ss_pred HHh
Confidence 433
No 20
>3qu6_A IRF3 protein; helix-turn-helix, gene regulation, DNA binding protein; 2.30A {Homo sapiens} SCOP: a.4.5.23 PDB: 2pi0_A 2o6g_E 1t2k_A
Probab=47.43 E-value=12 Score=28.79 Aligned_cols=62 Identities=15% Similarity=0.119 Sum_probs=44.5
Q ss_pred CCCchHHhHHhhhCcCCCCCCeEEeeCCCeeEEEeC-----------hHHHHHHHhccCCCC-----CCcHHHHHHHHHH
Q psy6350 81 GTPGTGAKRKSREDREYCPRYIKWTNRERGVFKLVD-----------SKAVSRLWGLHKNKP-----DMNYETMGRALRS 144 (189)
Q Consensus 81 g~~l~~Flr~lLed~e~~~~~I~Wtdk~~geFk~vd-----------pe~VArLWG~rKnkp-----~MtYeKmSRaLRy 144 (189)
.++|-.+|.+.++.. .|+ -++|+|+++..|+|-= -..+=+.|...+++- .-+..+.=+-+|.
T Consensus 8 k~rlr~WL~~qidsg-~yp-Gl~W~d~~kt~FrIPWkH~~r~~~~~~D~~IFkaWA~~~Gk~~~g~d~~dp~~WKtnfRc 85 (116)
T 3qu6_A 8 KPRILPWLVSQLDLG-QLE-GVAWVNKSRTRFRIPWKHGLRQDAQQEDFGIFQAWAEATGAYVPGRDKPDLPTWKRNFRS 85 (116)
T ss_dssp -CCHHHHHHHHHHHT-CST-TCEECSTTSCEEEEECCC--------CCCSHHHHHHHHTTSCCBTTBCCCHHHHHHHHHH
T ss_pred CccHHHHHHHHhccC-CcC-CcEEEcCCCCEEEecCcCCCcCCcchhHHHHHHHHHHhcCcccCCCCCCCHHHHHHHHHH
Confidence 467889999999996 575 6799999999999832 134668899888862 3456665444554
No 21
>3qu3_A IRF-7, interferon regulatory factor 7; helix-turn-helix, gene regulation, DNA binding protein; 1.30A {Mus musculus} SCOP: a.4.5.0
Probab=28.70 E-value=36 Score=26.88 Aligned_cols=49 Identities=12% Similarity=0.217 Sum_probs=39.9
Q ss_pred CCCchHHhHHhhhCcCCCCCCeEEeeCCCeeEEEe-----------ChHHHHHHHhccCCCC
Q psy6350 81 GTPGTGAKRKSREDREYCPRYIKWTNRERGVFKLV-----------DSKAVSRLWGLHKNKP 131 (189)
Q Consensus 81 g~~l~~Flr~lLed~e~~~~~I~Wtdk~~geFk~v-----------dpe~VArLWG~rKnkp 131 (189)
..+|-.+|.+.++.. .|+ =+.|+|+++..|+|- +-..+=+.|..++++.
T Consensus 12 r~rlrpWL~~qidSg-~yp-GL~W~d~~kt~FrIPWkHa~r~d~~~~D~~IFkaWA~~tGk~ 71 (137)
T 3qu3_A 12 RVLFGDWLLGEVSSG-QYE-GLQWLNEARTVFRVPWKHFGRRDLDEEDAQIFKAWAVARGRW 71 (137)
T ss_dssp CCCHHHHHHHHHHHT-CST-TCEESSTTCCEEEEECCCCTTSCCCGGGGHHHHHHHHHTTSS
T ss_pred cccHHHHHHHHhccC-CcC-CceEecCCCCEEEeeCccCCcCCCchHHHHHHHHHHHHhCCc
Confidence 467889999999996 576 678999999999994 2356779999999863
No 22
>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.0 PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 4h6j_B 2b02_A* 2k7s_A 2a24_B
Probab=27.37 E-value=35 Score=22.21 Aligned_cols=37 Identities=24% Similarity=0.330 Sum_probs=23.8
Q ss_pred HhHHhhhCcCCCCCCeEEeeCCCeeEEEeChHHHHHHHhccC
Q psy6350 87 AKRKSREDREYCPRYIKWTNRERGVFKLVDSKAVSRLWGLHK 128 (189)
Q Consensus 87 Flr~lLed~e~~~~~I~Wtdk~~geFk~vdpe~VArLWG~rK 128 (189)
|...++++ .+++|...|. +|.|..+++. ++++.|...
T Consensus 3 ~~~ll~e~---~~d~i~~~d~-~g~i~~~n~~-~~~~~G~~~ 39 (121)
T 3f1p_B 3 FKGLNVCQ---PTRFISRHNI-EGIFTFVDHR-CVATVGYQP 39 (121)
T ss_dssp -----CCC---CCEEEEEECT-TSBEEEECTT-HHHHHSCCG
T ss_pred cccceecC---CCceEEEECC-CceEEEECcc-hhhhhCCCh
Confidence 44444444 3678888886 6799999984 888888643
No 23
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=27.37 E-value=1.3e+02 Score=19.58 Aligned_cols=44 Identities=11% Similarity=0.003 Sum_probs=34.5
Q ss_pred ChHHHHHHHhccCCCCCCcHHHHHHHHHHHhhcCeeEecc-cCceeEE
Q psy6350 116 DSKAVSRLWGLHKNKPDMNYETMGRALRSSVVLTRLRTKC-TQKQTAT 162 (189)
Q Consensus 116 dpe~VArLWG~rKnkp~MtYeKmSRaLRyYY~kgIL~Kv~-GqrltY~ 162 (189)
...+|++.-+.. +.++.-.+++.|+.--++|++.+.. |+...|.
T Consensus 25 t~~ei~~~l~~~---~~~s~~Tv~~~l~rL~~kGlv~r~~~gr~~~y~ 69 (82)
T 1p6r_A 25 NTNEVIKELSKT---STWSPKTIQTMLLRLIKKGALNHHKEGRVFVYT 69 (82)
T ss_dssp EHHHHHHHHHHH---SCCCHHHHHHHHHHHHHTTSEEEEEETTEEEEE
T ss_pred CHHHHHHHHhhc---CCccHHHHHHHHHHHHHCCCeEEEecCCEEEEE
Confidence 446788887763 4689999999999999999999875 5555554
No 24
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=27.29 E-value=53 Score=21.56 Aligned_cols=45 Identities=9% Similarity=-0.021 Sum_probs=33.3
Q ss_pred ChHHHHHHHhccCCCCCCcHHHHHHHHHHHhhcCeeEecccC--ceeEE
Q psy6350 116 DSKAVSRLWGLHKNKPDMNYETMGRALRSSVVLTRLRTKCTQ--KQTAT 162 (189)
Q Consensus 116 dpe~VArLWG~rKnkp~MtYeKmSRaLRyYY~kgIL~Kv~Gq--rltY~ 162 (189)
..+++++.-. +..+.++..++.|.|+..-+.|++.++.+. ...|+
T Consensus 35 s~~el~~~l~--~~~~~is~~TVyR~L~~L~~~Glv~~~~~~~~~~~y~ 81 (83)
T 2fu4_A 35 SAEDLYKRLI--DMGEEIGLATVYRVLNQFDDAGIVTRHNFEGGKSVFE 81 (83)
T ss_dssp CHHHHHHHHH--HTTCCCCHHHHHHHHHHHHHHTSEEEEECGGGCEEEE
T ss_pred CHHHHHHHHH--HhCCCCCHhhHHHHHHHHHHCCCeEEEeeCCCceEee
Confidence 3456666543 335789999999999999999999998753 34444
No 25
>3olo_A Two-component sensor histidine kinase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, TRA; 2.09A {Nostoc SP}
Probab=21.19 E-value=1.1e+02 Score=18.87 Aligned_cols=37 Identities=11% Similarity=-0.059 Sum_probs=26.8
Q ss_pred HHhHHhhhCcCCCCCCeEEeeCCCeeEEEeChHHHHHHHhcc
Q psy6350 86 GAKRKSREDREYCPRYIKWTNRERGVFKLVDSKAVSRLWGLH 127 (189)
Q Consensus 86 ~Flr~lLed~e~~~~~I~Wtdk~~geFk~vdpe~VArLWG~r 127 (189)
.+++.+++.. ++.|.+.|. +|.+..+++ +.++++|..
T Consensus 13 ~~~~~~~~~~---~~~i~~~d~-~g~i~~~N~-~~~~l~G~~ 49 (118)
T 3olo_A 13 KFAHYLINNA---VEASFCLGD-NWQFLYVND-ATCRMTEYS 49 (118)
T ss_dssp HHHHHHHHHC---SSEEEEECT-TSBEEEECH-HHHHHHCCC
T ss_pred HHHHHHHhcC---CceEEEECC-CCcEEEEHH-HHHHHHCCC
Confidence 4556667653 567888885 578999998 478888864
No 26
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=20.23 E-value=1.1e+02 Score=22.27 Aligned_cols=46 Identities=11% Similarity=0.013 Sum_probs=34.1
Q ss_pred ChHHHHHHHhccCCCCCCcHHHHHHHHHHHhhcCeeEecc--cCceeEEe
Q psy6350 116 DSKAVSRLWGLHKNKPDMNYETMGRALRSSVVLTRLRTKC--TQKQTATR 163 (189)
Q Consensus 116 dpe~VArLWG~rKnkp~MtYeKmSRaLRyYY~kgIL~Kv~--GqrltY~f 163 (189)
..++|.+.- ++..+.++--++.|.|+..-+.|++.++. +....|..
T Consensus 36 sa~ei~~~l--~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~~ 83 (136)
T 1mzb_A 36 SAEDVYKAL--MEAGEDVGLATVYRVLTQFEAAGLVVRHNFDGGHAVFEL 83 (136)
T ss_dssp CHHHHHHHH--HHTTCCCCHHHHHHHHHHHHHHTSEEEECSSSSSCEEEE
T ss_pred CHHHHHHHH--HhhCCCCCHHHHHHHHHHHHHCCcEEEEEeCCCceEEEe
Confidence 334555442 33467899999999999999999999986 34556665
Done!