RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6350
(189 letters)
>1yo5_C SAM pointed domain containing ETS transcription factor; protein-DNA
complex, double helix, transcription/DNA complex; 2.00A
{Homo sapiens} SCOP: a.4.5.21
Length = 97
Score = 73.9 bits (181), Expect = 7e-18
Identities = 23/51 (45%), Positives = 36/51 (70%)
Query: 94 DREYCPRYIKWTNRERGVFKLVDSKAVSRLWGLHKNKPDMNYETMGRALRS 144
R+I+W N+E+G+FK+ DS V+RLWG+ KN+P MNY+ + R++R
Sbjct: 23 KPHSYGRFIRWLNKEKGIFKIEDSAQVARLWGIRKNRPAMNYDKLSRSIRQ 73
>1wwx_A E74-like factor 5 ESE-2B; DNA binding, transcriptional activation
and repression, structural genomics; NMR {Homo sapiens}
SCOP: a.4.5.21
Length = 107
Score = 73.2 bits (179), Expect = 2e-17
Identities = 19/51 (37%), Positives = 32/51 (62%)
Query: 93 EDREYCPRYIKWTNRERGVFKLVDSKAVSRLWGLHKNKPDMNYETMGRALR 143
E ++W +RE+G+F++V S+A++++WG K M YE + RALR
Sbjct: 20 LSPEENCGILEWEDREQGIFRVVKSEALAKMWGQRKKNDRMTYEKLSRALR 70
>3jtg_A ETS-related transcription factor ELF-3; ELF3, protein-DNA complex,
type II TGF-beta receptor, activa alternative splicing,
cytoplasm; HET: DNA; 2.20A {Mus musculus}
Length = 103
Score = 72.4 bits (177), Expect = 3e-17
Identities = 22/51 (43%), Positives = 30/51 (58%)
Query: 93 EDREYCPRYIKWTNRERGVFKLVDSKAVSRLWGLHKNKPDMNYETMGRALR 143
E +KW NR GVFK + S+AV++LWG K +M YE + RA+R
Sbjct: 16 IHPELNEGLMKWENRHEGVFKFLRSEAVAQLWGQKKKNSNMTYEKLSRAMR 66
>2dao_A Transcription factor ETV6; ETS domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 118
Score = 68.6 bits (167), Expect = 1e-15
Identities = 21/46 (45%), Positives = 32/46 (69%)
Query: 98 CPRYIKWTNRERGVFKLVDSKAVSRLWGLHKNKPDMNYETMGRALR 143
+I+W ++E +F++VD ++RLWG HKN+ +M YE M RALR
Sbjct: 24 YENFIRWEDKESKIFRIVDPNGLARLWGNHKNRTNMTYEKMSRALR 69
>2lf8_A Transcription factor ETV6; auto-inhibition; NMR {Mus musculus}
Length = 128
Score = 66.8 bits (162), Expect = 9e-15
Identities = 21/46 (45%), Positives = 32/46 (69%)
Query: 98 CPRYIKWTNRERGVFKLVDSKAVSRLWGLHKNKPDMNYETMGRALR 143
+I+W ++E +F++VD ++RLWG HKN+ +M YE M RALR
Sbjct: 20 YENFIRWEDKESKIFRIVDPNGLARLWGNHKNRTNMTYEKMSRALR 65
>1bc8_C SAP-1, protein (SAP-1 ETS domain); DNA-binding domain, winged
helix-turn-helix, DNA-binding specificity,
transcription/DNA complex; HET: DNA; 1.93A {Homo
sapiens} SCOP: a.4.5.21 PDB: 1bc7_C* 1k6o_A 1dux_C*
Length = 93
Score = 60.8 bits (147), Expect = 7e-13
Identities = 23/46 (50%), Positives = 33/46 (71%), Gaps = 1/46 (2%)
Query: 98 CPRYIKWTNRERGVFKLVDSKAVSRLWGLHKNKPDMNYETMGRALR 143
I WT+ + G FKL+ ++ V+RLWG+ KNKP+MNY+ + RALR
Sbjct: 20 NKHMICWTSND-GQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALR 64
>1fli_A FLI-1; transcription/DNA; NMR {Homo sapiens} SCOP: a.4.5.21
Length = 98
Score = 59.7 bits (144), Expect = 2e-12
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 94 DREYCPRYIKWTNRERGVFKLVDSKAVSRLWGLHKNKPDMNYETMGRALRS 144
I W G FK+ D V+R WG K+KP+MNY+ + RALR
Sbjct: 17 SDSANASCITWEGTN-GEFKMTDPDEVARRWGERKSKPNMNYDKLSRALRY 66
>1awc_A Protein (GA binding protein alpha); complex (transcription
regulation/DNA), DNA-binding, nuclear protein, ETS
domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus
musculus} SCOP: a.4.5.21
Length = 110
Score = 60.1 bits (145), Expect = 2e-12
Identities = 21/46 (45%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 98 CPRYIKWTNRERGVFKLVDSKAVSRLWGLHKNKPDMNYETMGRALR 143
I W E FKL + V++ WG KNKP MNYE + RALR
Sbjct: 16 ARDCISWVGDEG-EFKLNQPELVAQKWGQRKNKPTMNYEKLSRALR 60
>1pue_E Protein (transcription factor PU.1 (TF PU.1)); complex
(transcription regulating/DNA), oncogene, transforming
protein, DNA- binding, activator; HET: DNA; 2.10A {Mus
musculus} SCOP: a.4.5.21
Length = 89
Score = 57.0 bits (137), Expect = 2e-11
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 94 DREYCPRYIKWTNRERGVFKLVDS--KAVSRLWGLHK-NKPDMNYETMGRALR 143
+ I W ++++G F+ +A++ WG+ K N+ M YE M RALR
Sbjct: 14 SGDMKD-SIWWVDKDKGTFQFSSKHKEALAHRWGIQKGNRKKMTYEKMARALR 65
>1hbx_G ETS-domain protein ELK-4; gene regulation, transcription complex;
3.15A {Homo sapiens} SCOP: a.4.5.21
Length = 157
Score = 57.9 bits (139), Expect = 4e-11
Identities = 23/46 (50%), Positives = 33/46 (71%), Gaps = 1/46 (2%)
Query: 98 CPRYIKWTNRERGVFKLVDSKAVSRLWGLHKNKPDMNYETMGRALR 143
I WT+ + G FKL+ ++ V+RLWG+ KNKP+MNY+ + RALR
Sbjct: 21 NKHMICWTSND-GQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALR 65
>4avp_A ETS translocation variant 1; transcription, transcriptional
activation and repression, DN binding protein, E
twenty-SIX, erwing sarcoma; 1.82A {Homo sapiens}
Length = 106
Score = 55.9 bits (134), Expect = 6e-11
Identities = 20/47 (42%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 98 CPRYIKWTNRERGVFKLVDSKAVSRLWGLHKNKPDMNYETMGRALRS 144
+I WT R FKL++ + V+R WG+ KN+P MNY+ + R+LR
Sbjct: 27 NSHFIAWTGRG-MEFKLIEPEEVARRWGIQKNRPAMNYDKLSRSLRY 72
>2nny_A C-ETS-1 protein, P54; protein-DNA complex, transcription/DNA
complex; 2.58A {Homo sapiens} PDB: 3ri4_A 3mfk_A 1mdm_B
Length = 171
Score = 56.8 bits (136), Expect = 1e-10
Identities = 22/46 (47%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 98 CPRYIKWTNRERGVFKLVDSKAVSRLWGLHKNKPDMNYETMGRALR 143
+I WT FKL D V+R WG KNKP MNYE + R LR
Sbjct: 80 SQSFISWTGDGW-EFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLR 124
>1gvj_A C-ETS-1 protein, P54; transcription, autoinhibition, ETS domain;
1.53A {Homo sapiens} SCOP: a.4.5.21 PDB: 1md0_A 1r36_A
1k78_B 1k79_A* 1k7a_A* 2stt_A* 2stw_A*
Length = 146
Score = 55.2 bits (132), Expect = 3e-10
Identities = 23/46 (50%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 98 CPRYIKWTNRERGVFKLVDSKAVSRLWGLHKNKPDMNYETMGRALR 143
C +I WT FKL D V+R WG KNKP MNYE + R LR
Sbjct: 55 CQSFISWTGDGW-EFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLR 99
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway,
transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP:
c.67.1.3 PDB: 2ch2_A*
Length = 396
Score = 32.6 bits (75), Expect = 0.065
Identities = 16/87 (18%), Positives = 26/87 (29%), Gaps = 18/87 (20%)
Query: 11 YMPPPSNTHNGYYHYNNGGFVMPPGPSPTRPAIPTSVIQAAA--TSSHDDLYFLELGFQQ 68
+ PPP++ N +M PGPS V+ A S+
Sbjct: 3 FTPPPASLRNPLIIPEK--IMMGPGPSN----CSKRVLTAMTNTVLSNFHAELFRTM--D 54
Query: 69 RVKKKIRRV---KSEGT-----PGTGA 87
VK +R + ++ T
Sbjct: 55 EVKDGLRYIFQTENRATMCVSGSAHAG 81
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent
aminotransferase fold; HET: PLP; 2.20A {Salmonella
typhimurium} SCOP: c.67.1.3
Length = 366
Score = 32.5 bits (75), Expect = 0.065
Identities = 9/50 (18%), Positives = 25/50 (50%), Gaps = 8/50 (16%)
Query: 30 FVMPPGPSPTRPAIPTSVIQAAA--TSSHDDLYFLELGFQQRVKKKIRRV 77
++ PGP T +V +A + + DD Y + + +++++++ +
Sbjct: 6 LLLTPGPLTTSR----TVKEAMLFDSCTWDDDYNIGV--VEQIRQQLTAL 49
>1iug_A Putative aspartate aminotransferase; wild type,
pyridoxal-5'-phosphate form, riken structural
genomics/proteomics initiative, RSGI; HET: LLP; 2.20A
{Thermus thermophilus} SCOP: c.67.1.3
Length = 352
Score = 30.3 bits (69), Expect = 0.36
Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 15/67 (22%)
Query: 30 FVMPPGPSPTRPAIPTSVIQAAA--TSSHDDLYFLELGFQQRVKKKIRRV-KSEGTP--- 83
+++ PGP + ++A A H E+ + + +R ++EG
Sbjct: 3 WLLTPGPVR----LHPKALEALARPQLHHRTEAAREV--FLKARGLLREAFRTEGEVLIL 56
Query: 84 ---GTGA 87
GT A
Sbjct: 57 TGSGTLA 63
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.2 bits (67), Expect = 0.42
Identities = 28/174 (16%), Positives = 44/174 (25%), Gaps = 68/174 (39%)
Query: 2 DLVPDNYGGYMPP-------PSNTHNGYYHY----NNGGFVMPPGPSPTRPAIPTSVIQA 50
+++ NY M P PS Y N V R P ++
Sbjct: 85 EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS-RLQ-PYLKLRQ 142
Query: 51 AATSSHDDLYFLELGFQQRVKKKIRRVKSEGTPGTGAKRKS-------REDREYCPRYIK 103
A LEL + + V +G G+G K+ + C
Sbjct: 143 AL---------LEL-------RPAKNVLIDGVLGSG---KTWVALDVCLSYKVQC----- 178
Query: 104 WTNRERGVFKLVDSKAVSRLWGLHKNKPDMNYETMGRALRSSVVLTRLRTKCTQ 157
+ +F W +N + VL L+ Q
Sbjct: 179 --KMDFKIF-----------W--------LN---LKNCNSPETVLEMLQKLLYQ 208
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein,
PLP-dependent transferase; HET: LLP; 1.75A {Aedes
aegypti} PDB: 2hui_A* 2huu_A*
Length = 393
Score = 29.9 bits (68), Expect = 0.48
Identities = 18/86 (20%), Positives = 30/86 (34%), Gaps = 18/86 (20%)
Query: 12 MPPPSNTHNGYYHYNNGGFVMPPGPSPTRPAIPTSVIQAAA--TSSHDDLYFLELGFQQR 69
+ PP+ N +M PGPS P V+ A + H L++
Sbjct: 5 VTPPAVLREPLVTPNK--LLMGPGPSN----APQRVLDAMSRPILGHLHPETLKIM--DD 56
Query: 70 VKKKIRRV---KSEGT-----PGTGA 87
+K+ +R + + T G G
Sbjct: 57 IKEGVRYLFQTNNIATFCLSASGHGG 82
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET:
LLP; 2.58A {Klebsiella pneumoniae}
Length = 411
Score = 29.5 bits (67), Expect = 0.66
Identities = 11/68 (16%), Positives = 17/68 (25%), Gaps = 16/68 (23%)
Query: 30 FVMPPGPSPTRPAIPTSVIQAAA--TSSHDDLYFLELGFQQRVKKKIRRV---KSEGT-- 82
+M PGP V++A + D V R V ++ T
Sbjct: 15 LLMGPGPIN----ADPRVLRAMSSQLIGQYDPAMTHYM--NEVMALYRGVFRTENRWTML 68
Query: 83 ---PGTGA 87
Sbjct: 69 VDGTSRAG 76
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM;
1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Length = 392
Score = 29.1 bits (66), Expect = 0.83
Identities = 8/67 (11%), Positives = 16/67 (23%), Gaps = 15/67 (22%)
Query: 30 FVMPPGPSPTRPAIPTSVIQAAA--TSSHDDLYFLELGFQQRVKKKIRRV-KSEGT---- 82
+ GP V++ D F L ++V K ++ +
Sbjct: 11 ITLTAGPVN----AYPEVLRGLGRTVLYDYDPAFQLLY--EKVVDKAQKAMRLSNKPVIL 64
Query: 83 --PGTGA 87
Sbjct: 65 HGEPVLG 71
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent
enzymes, purine metabolism transaminases,
aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Length = 416
Score = 28.4 bits (64), Expect = 1.4
Identities = 9/68 (13%), Positives = 19/68 (27%), Gaps = 16/68 (23%)
Query: 30 FVMPPGPSPTRPAIPTSVIQAAA--TSSHDDLYFLELGFQQRVKKKIRRV---KSEGT-- 82
+M PGP + V++ + D F + + +R + K+
Sbjct: 13 TIMTPGPVE----VDPRVLRVMSTPVVGQFDPAFTGIM--NETMEMLRELFQTKNRWAYP 66
Query: 83 ---PGTGA 87
Sbjct: 67 IDGTSRAG 74
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative
aminotransferase, structural genomics, center for
structural genomics, JCSG; HET: PLP; 1.65A {Mus
musculus} PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Length = 393
Score = 28.4 bits (64), Expect = 1.5
Identities = 17/86 (19%), Positives = 31/86 (36%), Gaps = 18/86 (20%)
Query: 12 MPPPSNTHNGYYHYNNGGFVMPPGPSPTRPAIPTSVIQAAA--TSSHDDLYFLELGFQQR 69
+PPP ++ PGPS + V+ A + H L++ +
Sbjct: 9 VPPPEALSKPLSVPTR--LLLGPGPSN----LAPRVLAAGSLRMIGHMQKEMLQIM--EE 60
Query: 70 VKKKIRRV---KSEGT-----PGTGA 87
+K+ I+ V ++ T G A
Sbjct: 61 IKQGIQYVFQTRNPLTLVVSGSGHCA 86
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR
genomics, JCSG, PSI, protein structure initiative,
joint CE structural genomics; HET: PLP; 1.70A {Nostoc
SP} SCOP: c.67.1.3
Length = 393
Score = 28.4 bits (64), Expect = 1.5
Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 16/68 (23%)
Query: 30 FVMPPGPSPTRPAIPTSVIQAAA--TSSHDDLYFLELGFQQRVKKKIRRV---KSEGT-- 82
++ PGPS SV+QA H D FL L ++ +R V ++ T
Sbjct: 36 LLLGPGPSN----AHPSVLQAMNVSPVGHLDPAFLALM--DEIQSLLRYVWQTENPLTIA 89
Query: 83 ---PGTGA 87
GT A
Sbjct: 90 VSGTGTAA 97
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national
PROJ protein structural and functional analyses; HET:
PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*
Length = 353
Score = 27.9 bits (63), Expect = 1.8
Identities = 11/50 (22%), Positives = 23/50 (46%), Gaps = 8/50 (16%)
Query: 30 FVMPPGPSPTRPAIPTSVIQAAA--TSSHDDLYFLELGFQQRVKKKIRRV 77
++ PGP+P IP V +A H D L + + +++++ +
Sbjct: 2 LLLTPGPTP----IPERVQKALLRPMRGHLDPEVLRV--NRAIQERLAAL 45
>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for
structural genomics, JCSG; HET: MSE LLP; 1.70A
{Eubacterium rectale}
Length = 376
Score = 28.0 bits (63), Expect = 2.0
Identities = 6/48 (12%), Positives = 9/48 (18%), Gaps = 8/48 (16%)
Query: 32 MPPGPSPTRPAIPTSVIQAAA--TSSHDDLYFLELGFQQRVKKKIRRV 77
GP + V A F +K +
Sbjct: 23 FTVGPVMSSE----EVRAIGAEQVPYFRTTEFSST--MLENEKFMLEY 64
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate
aminotransferase, pyridoxal-5-phosphate, SAD, glycolate
pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae}
SCOP: c.67.1.3
Length = 385
Score = 27.6 bits (62), Expect = 2.8
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 8/50 (16%)
Query: 30 FVMPPGPSPTRPAIPTSVIQAAA--TSSHDDLYFLELGFQQRVKKKIRRV 77
++ PGP + +V +A + H F+ + QRV K R V
Sbjct: 7 TLLIPGPII----LSGAVQKALDVPSLGHTSPEFVSIF--QRVLKNTRAV 50
>1nqk_A Alkanesulfonate monooxygenase; structural genomics, beta barrel,
PSI, protein structure INI midwest center for structural
genomics, MCSG; 2.20A {Escherichia coli} SCOP: c.1.16.4
PDB: 1m41_A
Length = 381
Score = 27.0 bits (60), Expect = 3.8
Identities = 26/139 (18%), Positives = 44/139 (31%), Gaps = 29/139 (20%)
Query: 18 THNG-YYHYNNGGFVMPPGPSPTRPAIPTSVIQA-------AATSSHDDLYFLELGFQQR 69
NG + H + P P + + DLY +
Sbjct: 149 DFNGKHIHVRGAKLLFPA-IQQPYPPL----YFGGSSDVAQELAAEQVDLYLTWGEPPEL 203
Query: 70 VKKKIRRVKSEG-----TPGTGAK-----RKSRED-REYCPRYIKWTNRERGV-----FK 113
VK+KI +V+++ G + R++ ++ + R I + E F
Sbjct: 204 VKEKIEQVRAKAAAHGRKIRFGIRLHVIVRETNDEAWQAAERLISHLDDETIAKAQAAFA 263
Query: 114 LVDSKAVSRLWGLHKNKPD 132
DS R+ LH K D
Sbjct: 264 RTDSVGQQRMAALHNGKRD 282
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase;
PLP, structural genomics, NPPSFA; HET: PLP; 1.90A
{Pyrococcus horikoshii}
Length = 386
Score = 26.8 bits (60), Expect = 4.3
Identities = 6/50 (12%), Positives = 15/50 (30%), Gaps = 8/50 (16%)
Query: 30 FVMPPGPSPTRPAIPTSVIQAAA--TSSHDDLYFLELGFQQRVKKKIRRV 77
+ GP V++ SH + ++ +++R
Sbjct: 22 KLFTAGPVA----CFPEVLEIMKVQMFSHRSKEYRKV--HMDTVERLREF 65
>3gzs_A Uncharacterized SUSD superfamily protein; structural genomics,
joint center for structural genomics, J protein
structure initiative, PSI-2; 2.09A {Bacteroides
fragilis}
Length = 515
Score = 26.8 bits (58), Expect = 4.5
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 2 DLVPDNYGGYMPPPSNTHNGYYHYNN 27
+L D + GYM P N NG ++ N
Sbjct: 56 NLAGDAWAGYMSPRDNKFNGSKNFTN 81
>2f5u_A Virion protein UL25; HSV-1, capsid protein, DNA packaging, head
completion, viral protein; 2.10A {Human herpesvirus 1}
Length = 447
Score = 26.9 bits (59), Expect = 4.9
Identities = 11/44 (25%), Positives = 16/44 (36%)
Query: 23 YHYNNGGFVMPPGPSPTRPAIPTSVIQAAATSSHDDLYFLELGF 66
Y G ++ + +S +D LYFL LGF
Sbjct: 396 IQYEQGLGLLAQQARIGLGSNTKRFSAFNVSSDYDMLYFLCLGF 439
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription,
multi-protein complex, DNA- binding, magnesium; 3.65A
{Schizosaccharomyces pombe}
Length = 1752
Score = 27.0 bits (59), Expect = 5.2
Identities = 10/48 (20%), Positives = 17/48 (35%)
Query: 9 GGYMPPPSNTHNGYYHYNNGGFVMPPGPSPTRPAIPTSVIQAAATSSH 56
+ P T + G + P SP+ P TS ++ S+
Sbjct: 1531 YKGVQSPGYTSPFSSAMSPGYGLTSPSYSPSSPGYSTSPAYMPSSPSY 1578
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine
methyltransferase 4, APO catalytic domain, regulator,
mRNA processing; 2.55A {Rattus norvegicus}
Length = 480
Score = 26.6 bits (58), Expect = 5.2
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 19 HNGYYHYNNGGFVMPPGPSPTRPA 42
N ++ Y PPG T P+
Sbjct: 444 KNPFFRYTGTTPSPPPGSHYTSPS 467
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship,
oxidation-reduct umpolung, thiamine diphosphate,
reaction intermediate; HET: TDM FAD GOL; 1.09A
{Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A*
2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Length = 603
Score = 26.8 bits (60), Expect = 5.3
Identities = 6/25 (24%), Positives = 12/25 (48%), Gaps = 3/25 (12%)
Query: 160 TATRD-VPLVFSSIMGHVLTSVIGT 183
A D VP++ ++G T+ +
Sbjct: 96 DAREDHVPVLA--LIGQFGTTGMNM 118
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A
{Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
PDB: 2dji_A* 1v5f_A* 1v5g_A*
Length = 590
Score = 26.4 bits (59), Expect = 6.7
Identities = 6/25 (24%), Positives = 10/25 (40%), Gaps = 3/25 (12%)
Query: 160 TATRD-VPLVFSSIMGHVLTSVIGT 183
A D +P+V I+G +
Sbjct: 89 DAAMDNIPVVA--ILGSRPQRELNM 111
>3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain,
catalytic domain, domain interaction., calcium,
extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A
Length = 365
Score = 26.1 bits (56), Expect = 7.8
Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 5/62 (8%)
Query: 20 NGYYHYNNGGFVMPPG-PSPTR---PAIPTSVIQAAATSSHDDLYFLELGFQQRVKKKIR 75
N Y+ Y+ +M PG P I I A S + YF + Q ++
Sbjct: 293 NQYWRYDERRQMMDPGYPKLITKNFQGIGPK-IDAVFYSKNKYYYFFQGSNQFEYDFLLQ 351
Query: 76 RV 77
R+
Sbjct: 352 RI 353
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A
{Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Length = 384
Score = 26.0 bits (58), Expect = 7.9
Identities = 10/48 (20%), Positives = 16/48 (33%), Gaps = 8/48 (16%)
Query: 32 MPPGPSPTRPAIPTSVIQAAATS--SHDDLYFLELGFQQRVKKKIRRV 77
+ GP+ I V+ A + F+E K +R V
Sbjct: 6 LHVGPTT----IKEDVLVAGLENNVGFTSKEFVEAL--AYSLKGLRYV 47
>3p1u_A SUSD homolog; structural genomics, joint center for structural
genomics, J protein structure initiative, PSI-biology;
2.05A {Parabacteroides distasonis atcc 8503}
Length = 529
Score = 26.0 bits (56), Expect = 8.8
Identities = 4/28 (14%), Positives = 6/28 (21%)
Query: 1 MDLVPDNYGGYMPPPSNTHNGYYHYNNG 28
L D Y Y ++
Sbjct: 40 KPLQIDFYSQMTVDGGGWGTKNYIQDDE 67
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.133 0.403
Gapped
Lambda K H
0.267 0.0799 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,918,352
Number of extensions: 161873
Number of successful extensions: 387
Number of sequences better than 10.0: 1
Number of HSP's gapped: 385
Number of HSP's successfully gapped: 43
Length of query: 189
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 101
Effective length of database: 4,244,745
Effective search space: 428719245
Effective search space used: 428719245
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.4 bits)