RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6350
(189 letters)
>d1wwxa1 a.4.5.21 (A:8-101) E74-like factor 5 ese-2b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 94
Score = 82.2 bits (203), Expect = 1e-21
Identities = 19/50 (38%), Positives = 32/50 (64%)
Query: 94 DREYCPRYIKWTNRERGVFKLVDSKAVSRLWGLHKNKPDMNYETMGRALR 143
E ++W +RE+G+F++V S+A++++WG K M YE + RALR
Sbjct: 14 SPEENCGILEWEDREQGIFRVVKSEALAKMWGQRKKNDRMTYEKLSRALR 63
>d1yo5c1 a.4.5.21 (C:247-334) Sam pointed domain containing ets
transcription SPDEF {Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 81.0 bits (200), Expect = 3e-21
Identities = 23/52 (44%), Positives = 36/52 (69%)
Query: 93 EDREYCPRYIKWTNRERGVFKLVDSKAVSRLWGLHKNKPDMNYETMGRALRS 144
R+I+W N+E+G+FK+ DS V+RLWG+ KN+P MNY+ + R++R
Sbjct: 14 LKPHSYGRFIRWLNKEKGIFKIEDSAQVARLWGIRKNRPAMNYDKLSRSIRQ 65
>d1duxc_ a.4.5.21 (C:) Elk-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 79.8 bits (197), Expect = 1e-20
Identities = 26/49 (53%), Positives = 35/49 (71%)
Query: 96 EYCPRYIKWTNRERGVFKLVDSKAVSRLWGLHKNKPDMNYETMGRALRS 144
+ I WT+R+ G FKLVD++ V+RLWGL KNK +MNY+ + RALR
Sbjct: 14 QGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKLSRALRY 62
>d1awca_ a.4.5.21 (A:) GA binding protein (GABP) alpha {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 110
Score = 71.8 bits (176), Expect = 2e-17
Identities = 22/47 (46%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 98 CPRYIKWTNRERGVFKLVDSKAVSRLWGLHKNKPDMNYETMGRALRS 144
I W E G FKL + V++ WG KNKP MNYE + RALR
Sbjct: 16 ARDCISWVGDE-GEFKLNQPELVAQKWGQRKNKPTMNYEKLSRALRY 61
>d1puee_ a.4.5.21 (E:) Transcription factor PU.1, residues 171-259
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 88
Score = 70.6 bits (173), Expect = 4e-17
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 93 EDREYCPRYIKWTNRERGVFKLVDS--KAVSRLWGLHK-NKPDMNYETMGRALR 143
+ I W ++++G F+ +A++ WG+ K N+ M YE M RALR
Sbjct: 13 RSGDMKD-SIWWVDKDKGTFQFSSKHKEALAHRWGIQKGNRKKMTYEKMARALR 65
>d1hbxg_ a.4.5.21 (G:) Serum response factor accessory protein 1a,
SAP-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 155
Score = 71.5 bits (175), Expect = 9e-17
Identities = 23/47 (48%), Positives = 33/47 (70%), Gaps = 1/47 (2%)
Query: 98 CPRYIKWTNRERGVFKLVDSKAVSRLWGLHKNKPDMNYETMGRALRS 144
I WT+ + G FKL+ ++ V+RLWG+ KNKP+MNY+ + RALR
Sbjct: 19 NKHMICWTSND-GQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALRY 64
>d1flia_ a.4.5.21 (A:) Fli-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 69.9 bits (171), Expect = 9e-17
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 96 EYCPRYIKWTNRERGVFKLVDSKAVSRLWGLHKNKPDMNYETMGRALRS 144
I W G FK+ D V+R WG K+KP+MNY+ + RALR
Sbjct: 19 SANASCITWEGTN-GEFKMTDPDEVARRWGERKSKPNMNYDKLSRALRY 66
>d1gvja_ a.4.5.21 (A:) ETS-1 transcription factor, residues 331-440
{Human (Homo sapiens) [TaxId: 9606]}
Length = 142
Score = 69.5 bits (170), Expect = 4e-16
Identities = 23/47 (48%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 98 CPRYIKWTNRERGVFKLVDSKAVSRLWGLHKNKPDMNYETMGRALRS 144
C +I WT FKL D V+R WG KNKP MNYE + R LR
Sbjct: 55 CQSFISWTGDG-WEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRY 100
>d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate
aminotransferase {Thermus thermophilus [TaxId: 274]}
Length = 348
Score = 31.9 bits (71), Expect = 0.043
Identities = 9/50 (18%), Positives = 18/50 (36%), Gaps = 8/50 (16%)
Query: 30 FVMPPGPSPTRPAIPTSVIQAAATS--SHDDLYFLELGFQQRVKKKIRRV 77
+++ PGP P ++A A H E+ + + +R
Sbjct: 2 WLLTPGPVRLHPK----ALEALARPQLHHRTEAAREV--FLKARGLLREA 45
>d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 382
Score = 27.4 bits (59), Expect = 1.0
Identities = 14/48 (29%), Positives = 19/48 (39%), Gaps = 8/48 (16%)
Query: 32 MPPGPSPTRPAIPTSVIQA--AATSSHDDLYFLELGFQQRVKKKIRRV 77
+ PGP A V +A + H F+ + QRV K R V
Sbjct: 7 LIPGPIILSGA----VQKALDVPSLGHTSPEFVSI--FQRVLKNTRAV 48
>d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 388
Score = 26.6 bits (57), Expect = 2.1
Identities = 9/48 (18%), Positives = 17/48 (35%), Gaps = 8/48 (16%)
Query: 32 MPPGPSPTRPAIPTSVIQAAATS--SHDDLYFLELGFQQRVKKKIRRV 77
+ PGPS P ++ A ++ +K+ I+ V
Sbjct: 23 LGPGPSNLPP----RIMAAGGLQMIGSMSKDMYQI--MDEIKEGIQYV 64
>d1pqsa_ d.15.2.2 (A:) Cell division control protein 24, CDC24,
C-terminal domain {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 77
Score = 24.8 bits (54), Expect = 2.6
Identities = 7/51 (13%), Positives = 14/51 (27%), Gaps = 7/51 (13%)
Query: 47 VIQAAATSSHDDLYFLELGFQQRVKKKIRRVKSEGTPGTGAKRKSREDREY 97
+ + DDL + KI + + ED ++
Sbjct: 5 TLLVEKVWNFDDLI-------MAINSKISNTHNNNISPITKIKYQDEDGDF 48
>d1vjta2 d.162.1.2 (A:192-469) Putative alpha-glucosidase TM0752
{Thermotoga maritima [TaxId: 2336]}
Length = 278
Score = 24.9 bits (54), Expect = 6.0
Identities = 5/16 (31%), Positives = 7/16 (43%)
Query: 10 GYMPPPSNTHNGYYHY 25
G +P NG + Y
Sbjct: 70 GMLPIGDTVRNGSWKY 85
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.133 0.403
Gapped
Lambda K H
0.267 0.0754 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 712,143
Number of extensions: 31356
Number of successful extensions: 92
Number of sequences better than 10.0: 1
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 18
Length of query: 189
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 109
Effective length of database: 1,309,196
Effective search space: 142702364
Effective search space used: 142702364
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.0 bits)