BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6351
(168 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2G76|A Chain A, Crystal Structure Of Human 3-Phosphoglycerate
Dehydrogenase
pdb|2G76|B Chain B, Crystal Structure Of Human 3-Phosphoglycerate
Dehydrogenase
Length = 335
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/49 (61%), Positives = 33/49 (67%), Gaps = 3/49 (6%)
Query: 5 LRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIR 53
L+ G C GAALDVF EEPP+ L+ H VI PHLGASTKEAQ R
Sbjct: 269 LQSGQCAGAALDVFTEEPPRDRA---LVDHENVISCPHLGASTKEAQSR 314
>pdb|2EKL|A Chain A, Structure Of St1218 Protein From Sulfolobus Tokodaii
Length = 313
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 32/49 (65%)
Query: 5 LRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIR 53
++ G A DVF EPPK E EL+KH +VIVT H+GA TKEAQ R
Sbjct: 246 IKKGKVYAYATDVFWNEPPKEEWELELLKHERVIVTTHIGAQTKEAQKR 294
>pdb|1YGY|A Chain A, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase
From Mycobacterium Tuberculosis
pdb|1YGY|B Chain B, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase
From Mycobacterium Tuberculosis
pdb|3DC2|A Chain A, Crystal Structure Of Serine Bound D-3-Phosphoglycerate
Dehydrogenase From Mycobacterium Tuberculosis
pdb|3DC2|B Chain B, Crystal Structure Of Serine Bound D-3-Phosphoglycerate
Dehydrogenase From Mycobacterium Tuberculosis
Length = 529
Score = 49.3 bits (116), Expect = 9e-07, Method: Composition-based stats.
Identities = 26/46 (56%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Query: 8 GHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIR 53
GH A LDVF EP FEL +V+VTPHLGAST EAQ R
Sbjct: 249 GHVRAAGLDVFATEPCTDSPLFEL---AQVVVTPHLGASTAEAQDR 291
>pdb|3DDN|A Chain A, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound
D-3- Phosphoglycerate Dehydrogenase In Mycobacterium
Tuberculosis
pdb|3DDN|B Chain B, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound
D-3- Phosphoglycerate Dehydrogenase In Mycobacterium
Tuberculosis
Length = 528
Score = 49.3 bits (116), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/46 (56%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Query: 8 GHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIR 53
GH A LDVF EP FEL +V+VTPHLGAST EAQ R
Sbjct: 248 GHVRAAGLDVFATEPCTDSPLFEL---AQVVVTPHLGASTAEAQDR 290
>pdb|1WWK|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From
Pyrococcus Horikoshii Ot3
pdb|1WWK|B Chain B, Crystal Structure Of Phosphoglycerate Dehydrogenase From
Pyrococcus Horikoshii Ot3
Length = 307
Score = 46.2 bits (108), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 31/50 (62%), Gaps = 4/50 (8%)
Query: 5 LRCGHCGGAALDVFCEEP-PKSEQTFELIKHPKVIVTPHLGASTKEAQIR 53
L+ G GA LDVF EEP PK L K V++TPH+GAST EAQ R
Sbjct: 246 LKEGWIAGAGLDVFEEEPLPKDHP---LTKFDNVVLTPHIGASTVEAQER 292
>pdb|3K5P|A Chain A, Crystal Structure Of Amino Acid-Binding Act: D-Isomer
Specific 2- Hydroxyacid Dehydrogenase Catalytic Domain
From Brucella Melitensis
Length = 416
Score = 46.2 bits (108), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Query: 5 LRCGHCGGAALDVFCEEPPKSEQTFE--LIKHPKVIVTPHLGASTKEAQIR 53
L+ GH GAA+DVF EP + + F L VI+TPH+G ST+EAQ R
Sbjct: 258 LQEGHLAGAAIDVFPVEPASNGERFSTPLQGLENVILTPHIGGSTEEAQER 308
>pdb|2P9C|A Chain A, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9C|B Chain B, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|A Chain A, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|B Chain B, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|C Chain C, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|D Chain D, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2PA3|A Chain A, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
Length = 410
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 62/127 (48%), Gaps = 10/127 (7%)
Query: 1 MKSELRCGHCGGAALDVFCEEPPKSEQTFE--LIKHPKVIVTPHLGASTKEAQ----IRQ 54
+ L H GAA+DVF EP + F L + V++TPH+G ST+EAQ +
Sbjct: 249 LADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQEAQENIGLEV 308
Query: 55 DKQSIFYSLLGAELKNKQF--LTTPVQIG--LLSGRTSNGLNFINVNTYASEGGLKVAYE 110
+ I YS G+ L F ++ P+ +G L+ + +N +E G+ +A +
Sbjct: 309 AGKLIKYSDNGSTLSAVNFPEVSLPLHVGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQ 368
Query: 111 HDPSSSQ 117
+ +S+Q
Sbjct: 369 YLQTSAQ 375
>pdb|2P9G|A Chain A, Crystal Structure Of Serine Bound G336v,G337v Double
Mutant Of E.Coli Phosphoglycerate Dehydrogenase
pdb|2P9G|B Chain B, Crystal Structure Of Serine Bound G336v,G337v Double
Mutant Of E.Coli Phosphoglycerate Dehydrogenase
Length = 410
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 1 MKSELRCGHCGGAALDVFCEEPPKSEQTFE--LIKHPKVIVTPHLGASTKEAQ 51
+ L H GAA+DVF EP + F L + V++TPH+G ST+EAQ
Sbjct: 249 LADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQEAQ 301
>pdb|1SC6|A Chain A, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
pdb|1SC6|B Chain B, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
pdb|1SC6|C Chain C, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
pdb|1SC6|D Chain D, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
Length = 404
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 1 MKSELRCGHCGGAALDVFCEEPPKSEQTFE--LIKHPKVIVTPHLGASTKEAQ 51
+ L H GAA+DVF EP + F L + V++TPH+G ST+EAQ
Sbjct: 243 LADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQEAQ 295
>pdb|1PSD|A Chain A, The Allosteric Ligand Site In The Vmax-Type Cooperative
Enzyme Phosphoglycerate Dehydrogenase
pdb|1PSD|B Chain B, The Allosteric Ligand Site In The Vmax-Type Cooperative
Enzyme Phosphoglycerate Dehydrogenase
Length = 409
Score = 42.7 bits (99), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 5 LRCGHCGGAALDVFCEEPPKSEQTFE--LIKHPKVIVTPHLGASTKEAQ 51
L H GAA+DVF EP + F L + V++TPH+G ST+EAQ
Sbjct: 252 LASKHLAGAAIDVFPTEPATNSDPFTSPLCEFDNVLLTPHIGGSTQEAQ 300
>pdb|3KBO|A Chain A, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3KBO|B Chain B, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3KBO|C Chain C, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3KBO|D Chain D, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3PP8|A Chain A, 2.1 Angstrom Crystal Structure Of Putative Oxidoreductase
(Ycdw) From Salmonella Typhimurium
Length = 315
Score = 42.7 bits (99), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 3 SELRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQ 51
+ L G GA LDVF +EP E L +HP+V TPH+ A T+ A+
Sbjct: 241 AALDSGKLKGAXLDVFSQEPLPQESP--LWRHPRVAXTPHIAAVTRPAE 287
>pdb|1YBA|A Chain A, The Active Form Of Phosphoglycerate Dehydrogenase
pdb|1YBA|B Chain B, The Active Form Of Phosphoglycerate Dehydrogenase
pdb|1YBA|C Chain C, The Active Form Of Phosphoglycerate Dehydrogenase
pdb|1YBA|D Chain D, The Active Form Of Phosphoglycerate Dehydrogenase
Length = 410
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 5 LRCGHCGGAALDVFCEEPPKSEQTFE--LIKHPKVIVTPHLGASTKEAQ 51
L H GAA+DVF EP + F L + V++TPH+G ST+EAQ
Sbjct: 253 LASKHLAGAAIDVFPTEPATNSDPFTSPLCEFDNVLLTPHIGGSTQEAQ 301
>pdb|2DBR|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|B Chain B, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|C Chain C, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|D Chain D, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|E Chain E, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|F Chain F, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBZ|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P61)
pdb|2DBZ|B Chain B, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P61)
Length = 334
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
Query: 5 LRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGAST 47
L+ G GA LDVF EEP +E+ F+L V++TPH+G+++
Sbjct: 254 LKEGWIAGAGLDVFEEEPYYNEELFKL---DNVVLTPHIGSAS 293
>pdb|2DBQ|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (I41)
Length = 334
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
Query: 5 LRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGAST 47
L+ G GA LDVF EEP +E+ F+L V++TPH+G+++
Sbjct: 254 LKEGWIAGAGLDVFEEEPYYNEELFKL---DNVVLTPHIGSAS 293
>pdb|3BA1|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus
Blu
pdb|3BAZ|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus
Blumei In Complex With Nadp+
Length = 333
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Query: 3 SELRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIRQDKQSIFYS 62
S L G GGA LDVF EP E+ F L V++ PH+G+ T E R+ +
Sbjct: 263 SALVEGRLGGAGLDVFEREPEVPEKLFGL---ENVVLLPHVGSGTVET--RKVMADLVVG 317
Query: 63 LLGAELKNKQFLTTPV 78
L A K LT V
Sbjct: 318 NLEAHFSGKPLLTPVV 333
>pdb|4E5P|A Chain A, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|B Chain B, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|C Chain C, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|D Chain D, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|E Chain E, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|F Chain F, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
Length = 332
Score = 33.9 bits (76), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 8/71 (11%)
Query: 3 SELRCGHCGGAALDVF-CEEPPKSEQTFE----LIKHPKVIVTPHLGASTKEAQI---RQ 54
+ L G GG A DVF E+ ++++ + L+ HP + TPH+G++ + ++ R
Sbjct: 248 AALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRAVRLEIERC 307
Query: 55 DKQSIFYSLLG 65
Q+I +L G
Sbjct: 308 AAQNILQALAG 318
>pdb|4E5M|A Chain A, Thermostable Phosphite Dehydrogenase E175aA176R IN COMPLEX
WITH NADP
pdb|4E5M|B Chain B, Thermostable Phosphite Dehydrogenase E175aA176R IN COMPLEX
WITH NADP
Length = 329
Score = 33.9 bits (76), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 8/71 (11%)
Query: 3 SELRCGHCGGAALDVF-CEEPPKSEQTFE----LIKHPKVIVTPHLGASTKEAQI---RQ 54
+ L G GG A DVF E+ ++++ + L+ HP + TPH+G++ + ++ R
Sbjct: 248 AALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRAVRLEIERC 307
Query: 55 DKQSIFYSLLG 65
Q+I +L G
Sbjct: 308 AAQNILQALAG 318
>pdb|3HG7|A Chain A, Crystal Structure Of D-Isomer Specific 2-Hydroxyacid
Dehydrogenase Family Protein From Aeromonas Salmonicida
Subsp. Salmonicida A449
Length = 324
Score = 33.9 bits (76), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 3 SELRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPH 42
+ LR G G A LDVF +EP ++ L P +I+TPH
Sbjct: 242 TALRTGKLGMAVLDVFEQEPLPADSP--LWGQPNLIITPH 279
>pdb|4E5K|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
pdb|4E5K|B Chain B, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
pdb|4E5K|C Chain C, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
pdb|4E5K|D Chain D, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
Length = 329
Score = 33.9 bits (76), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 8/71 (11%)
Query: 3 SELRCGHCGGAALDVF-CEEPPKSEQTFE----LIKHPKVIVTPHLGASTKEAQI---RQ 54
+ L G GG A DVF E+ ++++ + L+ HP + TPH+G++ + ++ R
Sbjct: 248 AALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRAVRLEIERC 307
Query: 55 DKQSIFYSLLG 65
Q+I +L G
Sbjct: 308 AAQNILQALAG 318
>pdb|4E5N|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|B Chain B, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|C Chain C, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|D Chain D, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|E Chain E, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|F Chain F, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|G Chain G, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|H Chain H, Thermostable Phosphite Dehydrogenase In Complex With Nad
Length = 330
Score = 33.9 bits (76), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 8/71 (11%)
Query: 3 SELRCGHCGGAALDVF-CEEPPKSEQTFE----LIKHPKVIVTPHLGASTKEAQI---RQ 54
+ L G GG A DVF E+ ++++ + L+ HP + TPH+G++ + ++ R
Sbjct: 248 AALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRAVRLEIERC 307
Query: 55 DKQSIFYSLLG 65
Q+I +L G
Sbjct: 308 AAQNILQALAG 318
>pdb|4EBF|A Chain A, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|B Chain B, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|C Chain C, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|D Chain D, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|E Chain E, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|F Chain F, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
Length = 334
Score = 33.5 bits (75), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 8/71 (11%)
Query: 3 SELRCGHCGGAALDVF-CEEPPKSEQTFE----LIKHPKVIVTPHLGASTKEAQI---RQ 54
+ L G GG A DVF E+ ++++ + L+ HP + TPH+G++ + ++ R
Sbjct: 249 AALERGQLGGYAADVFEXEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRAVRLEIERC 308
Query: 55 DKQSIFYSLLG 65
Q+I +L G
Sbjct: 309 AAQNILQALAG 319
>pdb|4DGS|A Chain A, The Crystals Structure Of Dehydrogenase From Rhizobium
Meliloti
Length = 340
Score = 33.5 bits (75), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 5 LRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQ 51
L+ G GA LDVF EP E P ++ PH G++T E +
Sbjct: 272 LKSGTIAGAGLDVFVNEPAIRS---EFHTTPNTVLXPHQGSATVETR 315
>pdb|4G2N|A Chain A, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
pdb|4G2N|B Chain B, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
pdb|4G2N|C Chain C, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
pdb|4G2N|D Chain D, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
Length = 345
Score = 33.1 bits (74), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 5 LRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQ 51
LR H A LDVF EP + L + +TPH+G++T E +
Sbjct: 277 LRSKHLFAAGLDVFANEPAIDPRYRSL---DNIFLTPHIGSATHETR 320
>pdb|3NAQ|A Chain A, Apo-Form Of Nad-Dependent Formate Dehydrogenase From
Higher-Plant Arabidopsis Thaliana
pdb|3NAQ|B Chain B, Apo-Form Of Nad-Dependent Formate Dehydrogenase From
Higher-Plant Arabidopsis Thaliana
Length = 357
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 5 LRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIR 53
+ GH GG + DV+ +P + + + P +TPH +T +AQ+R
Sbjct: 276 VESGHIGGYSGDVWDPQPAPKDHPWRYM--PNQAMTPHTSGTTIDAQLR 322
>pdb|3N7U|A Chain A, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|B Chain B, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|C Chain C, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|D Chain D, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|E Chain E, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|F Chain F, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|G Chain G, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|H Chain H, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|I Chain I, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|J Chain J, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|K Chain K, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|L Chain L, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3JTM|A Chain A, Structure Of Recombinant Formate Dehydrogenase From
Arabidopsis Thaliana
Length = 351
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 5 LRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIR 53
+ GH GG + DV+ +P + + + P +TPH +T +AQ+R
Sbjct: 270 VESGHIGGYSGDVWDPQPAPKDHPWRYM--PNQAMTPHTSGTTIDAQLR 316
>pdb|3GG9|A Chain A, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
pdb|3GG9|B Chain B, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
pdb|3GG9|C Chain C, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
pdb|3GG9|D Chain D, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
Length = 352
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 1 MKSELRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEA 50
M + L G G AA+DVF EP T L++ I TPH+G +E+
Sbjct: 261 MVTALNRGRPGMAAIDVFETEPILQGHT--LLRMENCICTPHIGYVERES 308
>pdb|2CUK|A Chain A, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
pdb|2CUK|B Chain B, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
pdb|2CUK|C Chain C, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
pdb|2CUK|D Chain D, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
Length = 311
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 8 GHCGGAALDVFCEEP-PKSEQTFELIKHPKVIVTPHLGASTKEAQIRQDKQSI 59
GH GA LDV EP P + L P ++TPH+G++ + + R + ++
Sbjct: 245 GHLFGAGLDVTDPEPLPPGHPLYAL---PNAVITPHIGSAGRTTRERMAEVAV 294
>pdb|1XDW|A Chain A, Nad+-Dependent (R)-2-Hydroxyglutarate Dehydrogenase From
Acidaminococcus Fermentans
Length = 331
Score = 30.8 bits (68), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
Query: 21 EPPKSEQTFELIKHPKVIVTPHLGASTKEA 50
E P E+ +L +P+V++TPHLG+ T EA
Sbjct: 278 ENPLFEKLVDL--YPRVLITPHLGSYTDEA 305
>pdb|2D0I|A Chain A, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|B Chain B, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|C Chain C, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|D Chain D, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
Length = 333
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 5 LRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQ 51
++ G G A DVF +EP + + F+ + ++TPH EAQ
Sbjct: 249 IKQGKLKGYATDVFEKEPVREHELFKY--EWETVLTPHYAGLALEAQ 293
>pdb|4G35|A Chain A, Mcl-1 In Complex With A Biphenyl Cross-Linked Noxa Peptide
Length = 165
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 122 LAFGSNVAKHVLTVKQGLFTELLSYSLILVLQEDTAQWSI 161
++FG+ VAKH+ +V Q F E L+ ++ VL W +
Sbjct: 106 ISFGAFVAKHLKSVNQESFIEPLAETITDVLVRTKRDWLV 145
>pdb|1WSX|A Chain A, Solution Structure Of Mcl-1
pdb|2JM6|B Chain B, Solution Structure Of Mcl-1 Complexed With Noxab
pdb|2ROC|A Chain A, Solution Structure Of Mcl-1 Complexed With Puma
pdb|2ROD|A Chain A, Solution Structure Of Mcl-1 Complexed With Noxaa
Length = 162
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 122 LAFGSNVAKHVLTVKQGLFTELLSYSLILVLQEDTAQWSI 161
++FG+ VAKH+ +V Q F E L+ ++ VL W +
Sbjct: 103 ISFGAFVAKHLKSVNQESFIEPLAETITDVLVRTKRDWLV 142
>pdb|1J49|A Chain A, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J49|B Chain B, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
Length = 333
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 37/88 (42%), Gaps = 14/88 (15%)
Query: 5 LRCGHCGGAALDVFCEEPPKSEQTFE-----------LIKHPKVIVTPHLGASTKEAQIR 53
L G G A+DV+ E + +E LI P V+VTPH T A +R
Sbjct: 249 LDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADLIARPNVLVTPHTAFYTTHA-VR 307
Query: 54 QDKQSIFYSLLGAELKNKQFLTTPVQIG 81
F + L EL + TPV++G
Sbjct: 308 NMVVKAFDNNL--ELVEGKEAETPVKVG 333
>pdb|3PK1|A Chain A, Crystal Structure Of Mcl-1 In Complex With The Baxbh3
Domain
pdb|3PK1|C Chain C, Crystal Structure Of Mcl-1 In Complex With The Baxbh3
Domain
Length = 189
Score = 26.6 bits (57), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 122 LAFGSNVAKHVLTVKQGLFTELLSYSLILVLQEDTAQW 159
++FG+ VAKH+ T+ Q E L+ S+ VL W
Sbjct: 131 ISFGAFVAKHLKTINQESCIEPLAESITDVLVRTKRDW 168
>pdb|3SO4|A Chain A, Methionine-Adenosyltransferase From Entamoeba Histolytica
pdb|3SO4|B Chain B, Methionine-Adenosyltransferase From Entamoeba Histolytica
pdb|3SO4|C Chain C, Methionine-Adenosyltransferase From Entamoeba Histolytica
pdb|3SO4|D Chain D, Methionine-Adenosyltransferase From Entamoeba Histolytica
Length = 415
Score = 26.6 bits (57), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 65/165 (39%), Gaps = 21/165 (12%)
Query: 7 CGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIRQDK--QSIFYSLL 64
C A LD + PKS E +I+ LG T A I K + + S+
Sbjct: 39 CDQISDAILDACLAQDPKSHVACETATKTGLILV--LGEITTNAVIDIPKIVRGVVKSI- 95
Query: 65 GAELKNKQFLTTPVQIGLLSGRTSNGLNFINVNTYASEGGLKV-AYEHDPSSSQNLVALA 123
G + NK F +T + L+ + + G+ V E D + +
Sbjct: 96 GYDDTNKGF----------DYQTCSVLSCVEQQSQDIAKGVHVEKKEEDIGAGDQGIMFG 145
Query: 124 FGSNVAKHVLTVKQGLFTELLSYSLILVLQEDTAQWSIPYLRSPS 168
+ ++ +K ++ T +LS LIL LQE + +P+LR S
Sbjct: 146 YATDESKEMMP-----LTHVLSTKLILRLQECREKGILPWLRPDS 185
>pdb|3D7V|A Chain A, Crystal Structure Of Mcl-1 In Complex With An Mcl-1
Selective Bh3 Ligand
pdb|3IO9|A Chain A, Biml12y In Complex With Mcl-1
Length = 162
Score = 26.6 bits (57), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 122 LAFGSNVAKHVLTVKQGLFTELLSYSLILVLQEDTAQW 159
++FG+ VAKH+ T+ Q E L+ S+ VL W
Sbjct: 103 ISFGAFVAKHLKTINQESCIEPLAESITDVLVRTKRDW 140
>pdb|2PQK|A Chain A, X-Ray Crystal Structure Of Human Mcl-1 In Complex With Bim
Bh3
pdb|3KJ0|A Chain A, Mcl-1 In Complex With Bim Bh3 Mutant I2dy
pdb|3KJ1|A Chain A, Mcl-1 In Complex With Bim Bh3 Mutant I2da
pdb|3KJ2|A Chain A, Mcl-1 In Complex With Bim Bh3 Mutant F4ae
pdb|3KZ0|A Chain A, Mcl-1 Complex With Mcl-1-Specific Selected Peptide
pdb|3KZ0|B Chain B, Mcl-1 Complex With Mcl-1-Specific Selected Peptide
pdb|3MK8|A Chain A, The Mcl-1 Bh3 Helix Is An Exclusive Mcl-1 Inhibitor And
Apoptosis Sensitizer
Length = 158
Score = 26.2 bits (56), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 122 LAFGSNVAKHVLTVKQGLFTELLSYSLILVLQEDTAQWSIP 162
++FG+ VAKH+ T+ Q E L+ S+ VL W +
Sbjct: 99 ISFGAFVAKHLKTINQESCIEPLAESITDVLVRTKRDWLVK 139
>pdb|4HW2|A Chain A, Discovery Of Potent Mcl-1 Inhibitors Using Fragment-Based
Methods And Structure-Based Design
pdb|4HW2|B Chain B, Discovery Of Potent Mcl-1 Inhibitors Using Fragment-Based
Methods And Structure-Based Design
pdb|4HW2|C Chain C, Discovery Of Potent Mcl-1 Inhibitors Using Fragment-Based
Methods And Structure-Based Design
pdb|4HW2|D Chain D, Discovery Of Potent Mcl-1 Inhibitors Using Fragment-Based
Methods And Structure-Based Design
pdb|4HW2|E Chain E, Discovery Of Potent Mcl-1 Inhibitors Using Fragment-Based
Methods And Structure-Based Design
pdb|4HW2|F Chain F, Discovery Of Potent Mcl-1 Inhibitors Using Fragment-Based
Methods And Structure-Based Design
pdb|4HW3|A Chain A, Discovery Of Potent Mcl-1 Inhibitors Using Fragment-Based
Methods And Structure-Based Design
pdb|4HW3|B Chain B, Discovery Of Potent Mcl-1 Inhibitors Using Fragment-Based
Methods And Structure-Based Design
pdb|4HW3|C Chain C, Discovery Of Potent Mcl-1 Inhibitors Using Fragment-Based
Methods And Structure-Based Design
pdb|4HW3|D Chain D, Discovery Of Potent Mcl-1 Inhibitors Using Fragment-Based
Methods And Structure-Based Design
pdb|4HW3|E Chain E, Discovery Of Potent Mcl-1 Inhibitors Using Fragment-Based
Methods And Structure-Based Design
pdb|4HW3|F Chain F, Discovery Of Potent Mcl-1 Inhibitors Using Fragment-Based
Methods And Structure-Based Design
pdb|4HW3|G Chain G, Discovery Of Potent Mcl-1 Inhibitors Using Fragment-Based
Methods And Structure-Based Design
pdb|4HW3|H Chain H, Discovery Of Potent Mcl-1 Inhibitors Using Fragment-Based
Methods And Structure-Based Design
pdb|4HW3|I Chain I, Discovery Of Potent Mcl-1 Inhibitors Using Fragment-Based
Methods And Structure-Based Design
pdb|4HW3|J Chain J, Discovery Of Potent Mcl-1 Inhibitors Using Fragment-Based
Methods And Structure-Based Design
pdb|4HW3|K Chain K, Discovery Of Potent Mcl-1 Inhibitors Using Fragment-Based
Methods And Structure-Based Design
pdb|4HW3|L Chain L, Discovery Of Potent Mcl-1 Inhibitors Using Fragment-Based
Methods And Structure-Based Design
Length = 153
Score = 26.2 bits (56), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 122 LAFGSNVAKHVLTVKQGLFTELLSYSLILVLQEDTAQWSIP 162
++FG+ VAKH+ T+ Q E L+ S+ VL W +
Sbjct: 98 ISFGAFVAKHLKTINQESCIEPLAESITDVLVRTKRDWLVK 138
>pdb|2NL9|A Chain A, Crystal Structure Of The Mcl-1:bim Bh3 Complex
Length = 157
Score = 26.2 bits (56), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 122 LAFGSNVAKHVLTVKQGLFTELLSYSLILVLQEDTAQWSIP 162
++FG+ VAKH+ T+ Q E L+ S+ VL W +
Sbjct: 98 ISFGAFVAKHLKTINQESCIEPLAESITDVLVRTKRDWLVK 138
>pdb|4HW4|A Chain A, Discovery Of Potent Mcl-1 Inhibitors Using Fragment-Based
Methods And Structure-Based Design
pdb|4HW4|B Chain B, Discovery Of Potent Mcl-1 Inhibitors Using Fragment-Based
Methods And Structure-Based Design
Length = 157
Score = 26.2 bits (56), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 122 LAFGSNVAKHVLTVKQGLFTELLSYSLILVLQEDTAQWSIP 162
++FG+ VAKH+ T+ Q E L+ S+ VL W +
Sbjct: 98 ISFGAFVAKHLKTINQESCIEPLAESITDVLVRTKRDWLVK 138
>pdb|2NLA|A Chain A, Crystal Structure Of The Mcl-1:mnoxab Bh3 Complex
Length = 157
Score = 26.2 bits (56), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 122 LAFGSNVAKHVLTVKQGLFTELLSYSLILVLQEDTAQWSIP 162
++FG+ VAKH+ T+ Q E L+ S+ VL W +
Sbjct: 98 ISFGAFVAKHLKTINQESCIEPLAESITDVLVRTKRDWLVK 138
>pdb|2KBW|A Chain A, Solution Structure Of Human Mcl-1 Complexed With Human
Bid_bh3 Peptide
Length = 164
Score = 26.2 bits (56), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 122 LAFGSNVAKHVLTVKQGLFTELLSYSLILVLQEDTAQWSIP 162
++FG+ VAKH+ T+ Q E L+ S+ VL W +
Sbjct: 106 ISFGAFVAKHLKTINQESCIEPLAESITDVLVRTKRDWLVK 146
>pdb|1KB9|A Chain A, Yeast Cytochrome Bc1 Complex
pdb|1P84|A Chain A, Hdbt Inhibited Yeast Cytochrome Bc1 Complex
pdb|2IBZ|A Chain A, Yeast Cytochrome Bc1 Complex With Stigmatellin
pdb|3CX5|A Chain A, Structure Of Complex Iii With Bound Cytochrome C In
Reduced State And Definition Of A Minimal Core Interface
For Electron Transfer.
pdb|3CX5|L Chain L, Structure Of Complex Iii With Bound Cytochrome C In
Reduced State And Definition Of A Minimal Core Interface
For Electron Transfer.
pdb|3CXH|A Chain A, Structure Of Yeast Complex Iii With Isoform-2 Cytochrome C
Bound And Definition Of A Minimal Core Interface For
Electron Transfer.
pdb|3CXH|L Chain L, Structure Of Yeast Complex Iii With Isoform-2 Cytochrome C
Bound And Definition Of A Minimal Core Interface For
Electron Transfer
Length = 431
Score = 26.2 bits (56), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 104 GLKVAYEHDPSSSQNLVALAFGSNVA 129
G+ VA EH+PS+ V + FGS A
Sbjct: 9 GIVVATEHNPSAHTASVGVVFGSGAA 34
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,706,442
Number of Sequences: 62578
Number of extensions: 166245
Number of successful extensions: 456
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 409
Number of HSP's gapped (non-prelim): 44
length of query: 168
length of database: 14,973,337
effective HSP length: 92
effective length of query: 76
effective length of database: 9,216,161
effective search space: 700428236
effective search space used: 700428236
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)