BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6351
(168 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A5GFY8|SERA_PIG D-3-phosphoglycerate dehydrogenase OS=Sus scrofa GN=PHGDH PE=3 SV=1
Length = 533
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/49 (61%), Positives = 34/49 (69%), Gaps = 3/49 (6%)
Query: 5 LRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIR 53
L+ G C GAALDVF EEPP+ L+ H KVI PHLGAST+EAQ R
Sbjct: 249 LQSGQCAGAALDVFTEEPPRDR---ALVDHEKVISCPHLGASTREAQSR 294
>sp|O43175|SERA_HUMAN D-3-phosphoglycerate dehydrogenase OS=Homo sapiens GN=PHGDH PE=1
SV=4
Length = 533
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/49 (61%), Positives = 33/49 (67%), Gaps = 3/49 (6%)
Query: 5 LRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIR 53
L+ G C GAALDVF EEPP+ L+ H VI PHLGASTKEAQ R
Sbjct: 249 LQSGQCAGAALDVFTEEPPRDR---ALVDHENVISCPHLGASTKEAQSR 294
>sp|Q5R7M2|SERA_PONAB D-3-phosphoglycerate dehydrogenase OS=Pongo abelii GN=PHGDH PE=2
SV=3
Length = 533
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/49 (61%), Positives = 33/49 (67%), Gaps = 3/49 (6%)
Query: 5 LRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIR 53
L+ G C GAALDVF EEPP+ L+ H VI PHLGASTKEAQ R
Sbjct: 249 LQSGQCAGAALDVFTEEPPRGR---ALVDHENVISCPHLGASTKEAQSR 294
>sp|Q60HD7|SERA_MACFA D-3-phosphoglycerate dehydrogenase OS=Macaca fascicularis GN=PHGDH
PE=2 SV=4
Length = 533
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/49 (61%), Positives = 33/49 (67%), Gaps = 3/49 (6%)
Query: 5 LRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIR 53
L+ G C GAALDVF EEPP+ L+ H VI PHLGASTKEAQ R
Sbjct: 249 LQSGQCAGAALDVFTEEPPRDR---ALVDHENVISCPHLGASTKEAQSR 294
>sp|A5A6P1|SERA_PANTR D-3-phosphoglycerate dehydrogenase OS=Pan troglodytes GN=PHGDH PE=2
SV=1
Length = 533
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/49 (61%), Positives = 33/49 (67%), Gaps = 3/49 (6%)
Query: 5 LRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIR 53
L+ G C GAALDVF EEPP+ L+ H VI PHLGASTKEAQ R
Sbjct: 249 LQSGQCAGAALDVFTEEPPRDR---ALVDHENVISCPHLGASTKEAQSR 294
>sp|O08651|SERA_RAT D-3-phosphoglycerate dehydrogenase OS=Rattus norvegicus GN=Phgdh
PE=1 SV=3
Length = 533
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/49 (61%), Positives = 33/49 (67%), Gaps = 3/49 (6%)
Query: 5 LRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIR 53
L+ G C GAALDVF EEPP+ L+ H VI PHLGASTKEAQ R
Sbjct: 249 LQSGQCAGAALDVFTEEPPRDR---ALVDHENVISCPHLGASTKEAQSR 294
>sp|Q61753|SERA_MOUSE D-3-phosphoglycerate dehydrogenase OS=Mus musculus GN=Phgdh PE=1
SV=3
Length = 533
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/49 (61%), Positives = 33/49 (67%), Gaps = 3/49 (6%)
Query: 5 LRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIR 53
L+ G C GAALDVF EEPP+ L+ H VI PHLGASTKEAQ R
Sbjct: 249 LQSGQCAGAALDVFTEEPPRDR---ALVDHENVISCPHLGASTKEAQSR 294
>sp|Q5EAD2|SERA_BOVIN D-3-phosphoglycerate dehydrogenase OS=Bos taurus GN=PHGDH PE=2 SV=3
Length = 533
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/49 (61%), Positives = 33/49 (67%), Gaps = 3/49 (6%)
Query: 5 LRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIR 53
L+ G C GAALDVF EEPP+ L+ H VI PHLGASTKEAQ R
Sbjct: 249 LQSGQCAGAALDVFTEEPPRDR---ALVNHENVISCPHLGASTKEAQSR 294
>sp|P35136|SERA_BACSU D-3-phosphoglycerate dehydrogenase OS=Bacillus subtilis (strain
168) GN=serA PE=3 SV=3
Length = 525
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/48 (62%), Positives = 33/48 (68%), Gaps = 3/48 (6%)
Query: 5 LRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQI 52
L GH GAALDVF EPP + L+ HP VI TPHLGASTKEAQ+
Sbjct: 242 LENGHVAGAALDVFEVEPPVDNK---LVDHPLVIATPHLGASTKEAQL 286
>sp|O04130|SERA_ARATH D-3-phosphoglycerate dehydrogenase, chloroplastic OS=Arabidopsis
thaliana GN=At1g17745 PE=1 SV=2
Length = 624
Score = 59.7 bits (143), Expect = 8e-09, Method: Composition-based stats.
Identities = 30/47 (63%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 5 LRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQ 51
L G AALDVFCEEPP + LI+H V VTPHLGASTKEAQ
Sbjct: 325 LDAGIVAQAALDVFCEEPPSKDS--RLIQHENVTVTPHLGASTKEAQ 369
>sp|O27051|SERA_METTH D-3-phosphoglycerate dehydrogenase OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=serA PE=3 SV=1
Length = 525
Score = 52.4 bits (124), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/47 (55%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 5 LRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQ 51
L+ G GAALDVF EEPP+ EL V++TPH+GAST EAQ
Sbjct: 245 LKDGEIAGAALDVFEEEPPEGSPLLEL---ENVVLTPHIGASTSEAQ 288
>sp|Q54UH8|SERA_DICDI D-3-phosphoglycerate dehydrogenase OS=Dictyostelium discoideum
GN=serA PE=1 SV=1
Length = 407
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 36/53 (67%), Gaps = 2/53 (3%)
Query: 1 MKSELRCGHCGGAALDVFCEEPPKSEQTFE--LIKHPKVIVTPHLGASTKEAQ 51
+ + LR GH GAA+DV+ EEP + + +E L K P I+TPH+G ST+EAQ
Sbjct: 249 LANALRSGHLAGAAVDVYPEEPSANCKDWECELQKCPNTILTPHIGGSTEEAQ 301
>sp|O33116|SERA_MYCLE D-3-phosphoglycerate dehydrogenase OS=Mycobacterium leprae (strain
TN) GN=serA PE=3 SV=1
Length = 528
Score = 51.6 bits (122), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/53 (50%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 1 MKSELRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIR 53
+ +R GH A LDVF EP FEL +V+VTPHLGAST EAQ R
Sbjct: 241 LADAVRSGHVRAAGLDVFATEPCTDSPLFEL---SQVVVTPHLGASTAEAQDR 290
>sp|P0A544|SERA_MYCTU D-3-phosphoglycerate dehydrogenase OS=Mycobacterium tuberculosis
GN=serA PE=1 SV=1
Length = 528
Score = 49.3 bits (116), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/46 (56%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Query: 8 GHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIR 53
GH A LDVF EP FEL +V+VTPHLGAST EAQ R
Sbjct: 248 GHVRAAGLDVFATEPCTDSPLFEL---AQVVVTPHLGASTAEAQDR 290
>sp|P0A545|SERA_MYCBO D-3-phosphoglycerate dehydrogenase OS=Mycobacterium bovis (strain
ATCC BAA-935 / AF2122/97) GN=serA PE=3 SV=1
Length = 528
Score = 49.3 bits (116), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/46 (56%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Query: 8 GHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIR 53
GH A LDVF EP FEL +V+VTPHLGAST EAQ R
Sbjct: 248 GHVRAAGLDVFATEPCTDSPLFEL---AQVVVTPHLGASTAEAQDR 290
>sp|P73821|SERA_SYNY3 D-3-phosphoglycerate dehydrogenase OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=serA PE=3 SV=1
Length = 554
Score = 47.4 bits (111), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/50 (48%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Query: 3 SELRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQI 52
+ + GGAALDVF +EP + E VI+TPHLGAST+EAQ+
Sbjct: 269 TAIETAQIGGAALDVFAQEPLGESRLREF---SNVILTPHLGASTEEAQV 315
>sp|P40054|SERA_YEAST D-3-phosphoglycerate dehydrogenase 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SER3 PE=1 SV=1
Length = 469
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 10/57 (17%)
Query: 5 LRCGHCGGAALDVFCEEPPKSEQ----------TFELIKHPKVIVTPHLGASTKEAQ 51
++ GAALDV+ EP K+ + T EL+ P +I+TPH+G ST+EAQ
Sbjct: 300 VKANKIAGAALDVYPHEPAKNGEGSFNDELNSWTSELVSLPNIILTPHIGGSTEEAQ 356
>sp|P40510|SER33_YEAST D-3-phosphoglycerate dehydrogenase 2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SER33 PE=1 SV=1
Length = 469
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 10/57 (17%)
Query: 5 LRCGHCGGAALDVFCEEPPKSEQ----------TFELIKHPKVIVTPHLGASTKEAQ 51
++ GAALDV+ EP K+ + T EL+ P +I+TPH+G ST+EAQ
Sbjct: 300 VKANKIAGAALDVYPHEPAKNGEGSFNDELNSWTSELVSLPNIILTPHIGGSTEEAQ 356
>sp|O29445|SERA_ARCFU D-3-phosphoglycerate dehydrogenase OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=serA PE=3 SV=1
Length = 527
Score = 45.8 bits (107), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 5 LRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQI 52
++ G AALDV+ +EPP + L+K V+ TPH+ AST+EAQ+
Sbjct: 243 IKAGKVAAAALDVYEKEPPSPDNP--LLKLDNVVTTPHIAASTREAQL 288
>sp|Q58424|SERA_METJA D-3-phosphoglycerate dehydrogenase OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=serA PE=3 SV=1
Length = 524
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/47 (55%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 5 LRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQ 51
L+ G AALDVF EEPPK L VI TPH GAST+EAQ
Sbjct: 244 LKEGKIRAAALDVFEEEPPKDNPLLTL---DNVIGTPHQGASTEEAQ 287
>sp|Q59516|DHGY_METEA Glycerate dehydrogenase OS=Methylobacterium extorquens (strain ATCC
14718 / DSM 1338 / AM1) GN=hprA PE=1 SV=3
Length = 314
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 5 LRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEA-QIRQDK 56
L+ G GGA DV +EPPK P +IVTPH+ ++KEA QI D+
Sbjct: 243 LKDGTIGGAGFDVVAQEPPKDGNILCDADLPNLIVTPHVAWASKEAMQILADQ 295
>sp|Q8U3Y2|GYAR_PYRFU Glyoxylate reductase OS=Pyrococcus furiosus (strain ATCC 43587 /
DSM 3638 / JCM 8422 / Vc1) GN=gyaR PE=3 SV=1
Length = 336
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 5 LRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQ 51
L+ G GA LDVF EEP +E+ F L V++TPH+G++T EA+
Sbjct: 254 LKEGWIAGAGLDVFEEEPYYNEELFSL---DNVVLTPHIGSATFEAR 297
>sp|P45250|Y1556_HAEIN Putative 2-hydroxyacid dehydrogenase HI_1556 OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
GN=HI_1556 PE=1 SV=1
Length = 315
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 5 LRCGHCGGAALDVFCEEPPKSEQTFELIKH--PKVIVTPHLGASTKEA 50
L+ GH GGAALDV +EPP+ + L P +I+TPH+ ++ A
Sbjct: 246 LKTGHLGGAALDVMVKEPPEKDNPLILAAKTMPNLIITPHIAWASDSA 293
>sp|O34815|YOAD_BACSU Putative 2-hydroxyacid dehydrogenase YoaD OS=Bacillus subtilis
(strain 168) GN=yoaD PE=2 SV=1
Length = 344
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 5 LRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQ 51
L+ GA LDVF EPP+ E +ELI P V+ TPHL +T E +
Sbjct: 264 LKEHKISGAILDVFYHEPPE-ESDYELISLPNVLATPHLAGATFEVE 309
>sp|B4TSP5|GHRA_SALSV Glyoxylate/hydroxypyruvate reductase A OS=Salmonella schwarzengrund
(strain CVM19633) GN=ghrA PE=3 SV=1
Length = 312
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 3 SELRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQ 51
+ L G GA LDVF +EP E L +HP+V +TPH+ A T+ A+
Sbjct: 238 AALDSGKLKGAMLDVFSQEPLPQESP--LWRHPRVAMTPHIAAVTRPAE 284
>sp|B5BBF3|GHRA_SALPK Glyoxylate/hydroxypyruvate reductase A OS=Salmonella paratyphi A
(strain AKU_12601) GN=ghrA PE=3 SV=1
Length = 312
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 3 SELRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQ 51
+ L G GA LDVF +EP E L +HP+V +TPH+ A T+ A+
Sbjct: 238 AALDSGKLKGAMLDVFSQEPLPQESP--LWRHPRVAMTPHIAAVTRPAE 284
>sp|Q5PGZ3|GHRA_SALPA Glyoxylate/hydroxypyruvate reductase A OS=Salmonella paratyphi A
(strain ATCC 9150 / SARB42) GN=ghrA PE=3 SV=1
Length = 312
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 3 SELRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQ 51
+ L G GA LDVF +EP E L +HP+V +TPH+ A T+ A+
Sbjct: 238 AALDSGKLKGAMLDVFSQEPLPQESP--LWRHPRVAMTPHIAAVTRPAE 284
>sp|B4TEQ6|GHRA_SALHS Glyoxylate/hydroxypyruvate reductase A OS=Salmonella heidelberg
(strain SL476) GN=ghrA PE=3 SV=1
Length = 312
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 3 SELRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQ 51
+ L G GA LDVF +EP E L +HP+V +TPH+ A T+ A+
Sbjct: 238 AALDSGKLKGAMLDVFSQEPLPQESP--LWRHPRVAMTPHIAAVTRPAE 284
>sp|Q57QM2|GHRA_SALCH Glyoxylate/hydroxypyruvate reductase A OS=Salmonella choleraesuis
(strain SC-B67) GN=ghrA PE=3 SV=1
Length = 312
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 3 SELRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQ 51
+ L G GA LDVF +EP E L +HP+V +TPH+ A T+ A+
Sbjct: 238 AALDSGKLKGAMLDVFSQEPLPQESP--LWRHPRVAMTPHIAAVTRPAE 284
>sp|Q8ZQ30|GHRA_SALTY Glyoxylate/hydroxypyruvate reductase A OS=Salmonella typhimurium
(strain LT2 / SGSC1412 / ATCC 700720) GN=ghrA PE=1 SV=1
Length = 312
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 3 SELRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQ 51
+ L G GA LDVF +EP E L +HP+V +TPH+ A T+ A+
Sbjct: 238 AALDSGKLKGAMLDVFSQEPLPQESP--LWRHPRVAMTPHIAAVTRPAE 284
>sp|Q8Z7M6|GHRA_SALTI Glyoxylate/hydroxypyruvate reductase A OS=Salmonella typhi GN=ghrA
PE=3 SV=1
Length = 312
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 3 SELRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQ 51
+ L G GA LDVF +EP E L +HP+V +TPH+ A T+ A+
Sbjct: 238 AALDSGKLKGAMLDVFSQEPLPQESP--LWRHPRVAMTPHIAAVTRPAE 284
>sp|C0Q872|GHRA_SALPC Glyoxylate/hydroxypyruvate reductase A OS=Salmonella paratyphi C
(strain RKS4594) GN=ghrA PE=3 SV=1
Length = 312
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 3 SELRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQ 51
+ L G GA LDVF +EP E L +HP+V +TPH+ A T+ A+
Sbjct: 238 AALDSGKLKGAMLDVFSQEPLPQESP--LWRHPRVAMTPHIAAVTRPAE 284
>sp|A9N5T3|GHRA_SALPB Glyoxylate/hydroxypyruvate reductase A OS=Salmonella paratyphi B
(strain ATCC BAA-1250 / SPB7) GN=ghrA PE=3 SV=1
Length = 312
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 3 SELRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQ 51
+ L G GA LDVF +EP E L +HP+V +TPH+ A T+ A+
Sbjct: 238 AALDSGKLKGAMLDVFSQEPLPQESP--LWRHPRVAMTPHIAAVTRPAE 284
>sp|B4T2W6|GHRA_SALNS Glyoxylate/hydroxypyruvate reductase A OS=Salmonella newport
(strain SL254) GN=ghrA PE=3 SV=1
Length = 312
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 3 SELRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQ 51
+ L G GA LDVF +EP E L +HP+V +TPH+ A T+ A+
Sbjct: 238 AALDSGKLKGAMLDVFSQEPLPQESP--LWRHPRVAMTPHIAAVTRPAE 284
>sp|B5RBG3|GHRA_SALG2 Glyoxylate/hydroxypyruvate reductase A OS=Salmonella gallinarum
(strain 287/91 / NCTC 13346) GN=ghrA PE=3 SV=1
Length = 312
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 3 SELRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQ 51
+ L G GA LDVF +EP E L +HP+V +TPH+ A T+ A+
Sbjct: 238 AALDSGKLKGAMLDVFSQEPLPQESP--LWRHPRVAMTPHIAAVTRPAE 284
>sp|B5F974|GHRA_SALA4 Glyoxylate/hydroxypyruvate reductase A OS=Salmonella agona (strain
SL483) GN=ghrA PE=3 SV=1
Length = 312
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 3 SELRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQ 51
+ L G GA LDVF +EP E L +HP+V +TPH+ A T+ A+
Sbjct: 238 AALDSGKLKGAMLDVFSQEPLPQESP--LWRHPRVAMTPHIAAVTRPAE 284
>sp|B5QY30|GHRA_SALEP Glyoxylate/hydroxypyruvate reductase A OS=Salmonella enteritidis
PT4 (strain P125109) GN=ghrA PE=3 SV=1
Length = 312
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 3 SELRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQ 51
+ L G GA LDVF +EP E L +HP+V +TPH+ A T+ A+
Sbjct: 238 AALDSGKLKGAMLDVFSQEPLPQESP--LWRHPRVAMTPHIAAVTRPAE 284
>sp|B5FL30|GHRA_SALDC Glyoxylate/hydroxypyruvate reductase A OS=Salmonella dublin (strain
CT_02021853) GN=ghrA PE=3 SV=1
Length = 312
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 3 SELRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQ 51
+ L G GA LDVF +EP E L +HP+V +TPH+ A T+ A+
Sbjct: 238 AALDSGKLKGAMLDVFSQEPLPQESP--LWRHPRVAMTPHIAAVTRPAE 284
>sp|B7LTA2|GHRA_ESCF3 Glyoxylate/hydroxypyruvate reductase A OS=Escherichia fergusonii
(strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=ghrA
PE=3 SV=1
Length = 312
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 5 LRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQ 51
L G GA LDVF EP +E L KHP+V +TPH+ A T+ A+
Sbjct: 240 LNNGKLKGAMLDVFSREPLPAESP--LWKHPRVAMTPHVAAVTRPAE 284
>sp|Q9C4M5|GYAR_THELI Glyoxylate reductase OS=Thermococcus litoralis GN=gyaR PE=1 SV=1
Length = 331
Score = 43.1 bits (100), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 5 LRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQ 51
L+ G GA LDVF EEP +E+ F+L V++ PH+G++T EA+
Sbjct: 254 LKEGWIAGAGLDVFEEEPYYNEELFKL---KNVVLAPHIGSATHEAR 297
>sp|P0A9T3|SERA_SHIFL D-3-phosphoglycerate dehydrogenase OS=Shigella flexneri GN=serA
PE=3 SV=2
Length = 410
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 5 LRCGHCGGAALDVFCEEPPKSEQTFE--LIKHPKVIVTPHLGASTKEAQ 51
L H GAA+DVF EP + F L + V++TPH+G ST+EAQ
Sbjct: 253 LASKHLAGAAIDVFPTEPATNSDPFTSPLCEFDNVLLTPHIGGSTQEAQ 301
>sp|P0A9T0|SERA_ECOLI D-3-phosphoglycerate dehydrogenase OS=Escherichia coli (strain K12)
GN=serA PE=1 SV=2
Length = 410
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 5 LRCGHCGGAALDVFCEEPPKSEQTFE--LIKHPKVIVTPHLGASTKEAQ 51
L H GAA+DVF EP + F L + V++TPH+G ST+EAQ
Sbjct: 253 LASKHLAGAAIDVFPTEPATNSDPFTSPLCEFDNVLLTPHIGGSTQEAQ 301
>sp|P0A9T1|SERA_ECOL6 D-3-phosphoglycerate dehydrogenase OS=Escherichia coli O6:H1
(strain CFT073 / ATCC 700928 / UPEC) GN=serA PE=3 SV=2
Length = 410
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 5 LRCGHCGGAALDVFCEEPPKSEQTFE--LIKHPKVIVTPHLGASTKEAQ 51
L H GAA+DVF EP + F L + V++TPH+G ST+EAQ
Sbjct: 253 LASKHLAGAAIDVFPTEPATNSDPFTSPLCEFDNVLLTPHIGGSTQEAQ 301
>sp|P0A9T2|SERA_ECO57 D-3-phosphoglycerate dehydrogenase OS=Escherichia coli O157:H7
GN=serA PE=3 SV=2
Length = 410
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 5 LRCGHCGGAALDVFCEEPPKSEQTFE--LIKHPKVIVTPHLGASTKEAQ 51
L H GAA+DVF EP + F L + V++TPH+G ST+EAQ
Sbjct: 253 LASKHLAGAAIDVFPTEPATNSDPFTSPLCEFDNVLLTPHIGGSTQEAQ 301
>sp|P43885|SERA_HAEIN D-3-phosphoglycerate dehydrogenase OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=serA PE=3
SV=1
Length = 410
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 18/110 (16%)
Query: 5 LRCGHCGGAALDVFCEEPPKSEQTF--ELIKHPKVIVTPHLGASTKEAQIRQDKQSIFYS 62
L+ G GAA+DVF EP + F L + VI+TPH+G ST EAQ ++I +
Sbjct: 254 LKDGKLQGAAIDVFPVEPASINEEFISPLREFDNVILTPHIGGSTAEAQ-----ENIGFE 308
Query: 63 LLGAELKNKQFLTTPVQIGLLSGRTSNGLNFINVNTYASEGGLKVAYEHD 112
+ G +K +G T + +NF V+ EG ++ + H+
Sbjct: 309 VAGKFVKYSD-----------NGSTLSSVNFPEVSLPEHEGTKRLLHIHE 347
>sp|B7LFE3|GHRA_ECO55 Glyoxylate/hydroxypyruvate reductase A OS=Escherichia coli (strain
55989 / EAEC) GN=ghrA PE=3 SV=1
Length = 312
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 3 SELRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQ 51
+ L G GA LDVF EP E L +HP+V +TPH+ A T+ A+
Sbjct: 238 AALDSGKVKGAMLDVFNREPLPPENP--LWQHPRVTITPHVAAITRPAE 284
>sp|Q32HN5|GHRA_SHIDS Glyoxylate/hydroxypyruvate reductase A OS=Shigella dysenteriae
serotype 1 (strain Sd197) GN=ghrA PE=3 SV=2
Length = 312
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 3 SELRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQ 51
+ L G GA LDVF EP E L +HP+V +TPH+ A T+ A+
Sbjct: 238 AALDSGKVKGAMLDVFNREPLPPESP--LWQHPRVTITPHVAAITRPAE 284
>sp|Q31Z89|GHRA_SHIBS Glyoxylate/hydroxypyruvate reductase A OS=Shigella boydii serotype
4 (strain Sb227) GN=ghrA PE=3 SV=2
Length = 312
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 3 SELRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQ 51
+ L G GA LDVF EP E L +HP+V +TPH+ A T+ A+
Sbjct: 238 AALDSGKVKGAMLDVFNREPLPPESP--LWQHPRVTITPHVAAITRPAE 284
>sp|B2TTN6|GHRA_SHIB3 Glyoxylate/hydroxypyruvate reductase A OS=Shigella boydii serotype
18 (strain CDC 3083-94 / BS512) GN=ghrA PE=3 SV=1
Length = 312
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 3 SELRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQ 51
+ L G GA LDVF EP E L +HP+V +TPH+ A T+ A+
Sbjct: 238 AALDSGKVKGAMLDVFNREPLPPESP--LWQHPRVTITPHVAAITRPAE 284
>sp|Q3Z393|GHRA_SHISS Glyoxylate/hydroxypyruvate reductase A OS=Shigella sonnei (strain
Ss046) GN=ghrA PE=3 SV=2
Length = 312
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 3 SELRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQ 51
+ L G GA LDVF EP E L +HP+V +TPH+ A T+ A+
Sbjct: 238 AALDSGKVKGAMLDVFNREPLPPESP--LWQHPRVTITPHVAAITRPAE 284
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.132 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,650,979
Number of Sequences: 539616
Number of extensions: 2165876
Number of successful extensions: 4909
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 112
Number of HSP's that attempted gapping in prelim test: 4796
Number of HSP's gapped (non-prelim): 143
length of query: 168
length of database: 191,569,459
effective HSP length: 109
effective length of query: 59
effective length of database: 132,751,315
effective search space: 7832327585
effective search space used: 7832327585
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)