Query psy6351
Match_columns 168
No_of_seqs 241 out of 1813
Neff 6.2
Searched_HMMs 46136
Date Sat Aug 17 00:12:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6351.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6351hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01327 PGDH D-3-phosphoglyc 100.0 5.2E-33 1.1E-37 252.2 17.0 157 1-160 239-465 (525)
2 PRK13581 D-3-phosphoglycerate 100.0 5.5E-32 1.2E-36 245.6 16.6 157 1-160 240-466 (526)
3 COG0111 SerA Phosphoglycerate 99.8 1.9E-20 4.1E-25 161.6 7.4 80 1-103 243-322 (324)
4 PRK11790 D-3-phosphoglycerate 99.8 5.4E-19 1.2E-23 156.5 9.4 78 1-97 249-328 (409)
5 PRK13243 glyoxylate reductase; 99.8 7.2E-19 1.6E-23 151.9 8.5 76 1-98 250-325 (333)
6 PRK15409 bifunctional glyoxyla 99.8 6.4E-19 1.4E-23 151.8 8.0 76 1-97 246-321 (323)
7 KOG0068|consensus 99.8 2.3E-19 5E-24 154.8 4.6 105 1-105 246-405 (406)
8 PRK06487 glycerate dehydrogena 99.7 4.5E-18 9.7E-23 146.1 7.9 73 1-95 243-317 (317)
9 PLN02928 oxidoreductase family 99.7 7.6E-18 1.6E-22 146.4 8.1 76 1-95 272-347 (347)
10 PLN03139 formate dehydrogenase 99.7 1.3E-17 2.7E-22 147.1 7.8 76 1-95 301-376 (386)
11 PLN02306 hydroxypyruvate reduc 99.7 1.7E-17 3.7E-22 146.2 7.9 73 1-95 282-354 (386)
12 PRK12480 D-lactate dehydrogena 99.7 2.2E-17 4.8E-22 142.6 7.4 76 1-95 244-330 (330)
13 PRK07574 formate dehydrogenase 99.7 3.5E-17 7.6E-22 144.2 7.6 66 1-85 294-359 (385)
14 TIGR00719 sda_beta L-serine de 99.7 2.1E-16 4.7E-21 128.6 11.5 96 63-159 46-161 (208)
15 PRK15469 ghrA bifunctional gly 99.7 5.6E-17 1.2E-21 139.2 7.0 74 1-97 236-309 (312)
16 PRK06932 glycerate dehydrogena 99.7 7.1E-17 1.5E-21 138.6 7.0 66 1-85 243-312 (314)
17 COG1052 LdhA Lactate dehydroge 99.7 1.4E-16 3.1E-21 137.5 7.1 75 1-96 246-323 (324)
18 PRK08605 D-lactate dehydrogena 99.7 2.7E-16 5.7E-21 135.8 7.8 76 1-95 246-332 (332)
19 PRK08410 2-hydroxyacid dehydro 99.6 2.2E-16 4.8E-21 135.3 7.1 65 1-85 242-309 (311)
20 KOG0069|consensus 99.5 5.5E-15 1.2E-19 128.1 6.1 65 1-85 263-327 (336)
21 PRK06436 glycerate dehydrogena 99.5 1.1E-14 2.3E-19 124.8 7.6 74 1-99 219-293 (303)
22 PRK00257 erythronate-4-phospha 99.5 4.5E-14 9.7E-19 124.4 6.9 57 1-61 217-273 (381)
23 PRK15438 erythronate-4-phospha 99.5 1.1E-13 2.4E-18 121.8 6.7 57 1-61 217-273 (378)
24 KOG0067|consensus 96.4 0.0022 4.8E-08 57.0 2.9 80 1-105 279-359 (435)
25 PF00389 2-Hacid_dh: D-isomer 92.9 0.15 3.2E-06 37.9 3.8 32 45-95 102-133 (133)
26 PF15366 DUF4597: Domain of un 49.5 13 0.00029 24.5 1.8 15 30-44 18-32 (62)
27 PF06345 Drf_DAD: DRF Autoregu 31.4 18 0.00039 17.4 0.2 9 1-9 6-14 (15)
28 COG5157 CDC73 RNA polymerase I 26.4 47 0.001 29.0 2.0 37 71-111 215-251 (362)
29 PF06280 DUF1034: Fn3-like dom 24.6 26 0.00057 25.1 0.1 24 141-164 89-112 (112)
30 PF01256 Carb_kinase: Carbohyd 23.7 27 0.00058 29.0 0.1 12 33-44 114-125 (242)
31 PF07509 DUF1523: Protein of u 23.6 1.4E+02 0.0031 24.0 4.1 20 141-161 71-90 (175)
No 1
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=100.00 E-value=5.2e-33 Score=252.19 Aligned_cols=157 Identities=30% Similarity=0.369 Sum_probs=136.9
Q ss_pred CHHHHhcCCeeEEEeecCCCCCCCCCCChhhccCCceEEccCCCcchHHHHHHHHHHHHHHh------------------
Q psy6351 1 MKSELRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIRQDKQSIFYS------------------ 62 (168)
Q Consensus 1 L~~AL~~G~i~gAaLDVf~~EP~~~~~~~pL~~~~nvilTPHig~~T~ea~~~~~~~~~~~~------------------ 62 (168)
|++||++|+|+|||||||++||++++ |||++|||++|||+||+|.+++.+++..+++|+
T Consensus 239 L~~aL~~g~i~gAaLDVf~~EP~~~~---pL~~~~nvi~TPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~~vn~~~~ 315 (525)
T TIGR01327 239 LYEALEEGHVRAAALDVFEKEPPTDN---PLFDLDNVIATPHLGASTREAQENVATQVAEQVLDALKGLPVPNAVNAPGI 315 (525)
T ss_pred HHHHHHcCCeeEEEEecCCCCCCCCC---hhhcCCCeEECCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCceeeCCCC
Confidence 68999999999999999999997654 999999999999999999999999999999976
Q ss_pred -----------------------------------hcccccc--ccccchHHHHHhhccCCCCCCccccChhhHHhhCCc
Q psy6351 63 -----------------------------------LLGAELK--NKQFLTTPVQIGLLSGRTSNGLNFINVNTYASEGGL 105 (168)
Q Consensus 63 -----------------------------------~~g~~~~--~~~~lt~a~l~~~L~~~~~~~vn~VNa~~la~~~GI 105 (168)
.|.|..+ ++..++.|.++|+|....++.+|++||..+||++||
T Consensus 316 ~~~~~~~~~~~~~la~riG~~a~ql~~~~~~~v~i~~~GsfA~~~~~~~~~a~l~GlL~~~~~~d~~~~nA~~iA~e~GI 395 (525)
T TIGR01327 316 DADVMEKLKPYLDLAEKLGKLAGQLLDGAVQSVEVTYRGELATENSEPLTRAALKGLLSPVLDDEVNMVNAPAVAKERGI 395 (525)
T ss_pred CchhhhhhhhHHHHHHHHHHHHHHHcCCCceEEEEEEEcchhcccccHHHHHHHHHhCccccCCCccccCHHHHHHHcCC
Confidence 2333333 357899999999998766668999999999999999
Q ss_pred eEEEEECCCCC--CceEEEEEeecC-------------cccEEEEcceEeeccccccEEEEeecCCCCCc
Q psy6351 106 KVAYEHDPSSS--QNLVALAFGSNV-------------AKHVLTVKQGLFTELLSYSLILVLQEDTAQWS 160 (168)
Q Consensus 106 ~v~e~~~~~~~--~n~itv~~~~~~-------------~~~l~~i~~~~~~~~~eG~~li~r~~D~pg~~ 160 (168)
+|.+.+.+... .|.++|++.++. ..+|++||+|.+++.++|++|+++|.|+|||-
T Consensus 396 ~v~~~~~~~~~~hpNtv~i~l~~~~~~~~v~G~s~gGg~~~I~~ing~~v~~~~~~~~li~~~~D~pG~I 465 (525)
T TIGR01327 396 TVEESKSESSPDYKNYLSVTVTGDSGTVSVAGTVFGGFSPRIVEIDGFHVDLEPEGIMLIILHLDKPGVI 465 (525)
T ss_pred EEEEEEccCCCCCCCEEEEEEEeCCcEEEEEEEEecCCcEEEEEECCEEEEEecCccEEEEEecCcCCcc
Confidence 99888876543 788888765432 46899999999999999999999999999983
No 2
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=99.98 E-value=5.5e-32 Score=245.57 Aligned_cols=157 Identities=29% Similarity=0.402 Sum_probs=135.9
Q ss_pred CHHHHhcCCeeEEEeecCCCCCCCCCCChhhccCCceEEccCCCcchHHHHHHHHHHHHHHh------------------
Q psy6351 1 MKSELRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIRQDKQSIFYS------------------ 62 (168)
Q Consensus 1 L~~AL~~G~i~gAaLDVf~~EP~~~~~~~pL~~~~nvilTPHig~~T~ea~~~~~~~~~~~~------------------ 62 (168)
|++||++|+|+|||||||++||++++ |||++|||++|||+||+|.+++.+++..+++|+
T Consensus 240 L~~aL~~g~i~gAaLDVf~~EP~~~~---pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~~vn~~~~ 316 (526)
T PRK13581 240 LAEALKSGKVAGAALDVFEKEPPTDS---PLFELPNVVVTPHLGASTAEAQENVAIQVAEQVIDALRGGPVPNAVNLPSI 316 (526)
T ss_pred HHHHHhcCCeeEEEEecCCCCCCCCc---hhhcCCCeeEcCccccchHHHHHHHHHHHHHHHHHHHcCCCcCceeeCCCC
Confidence 68999999999999999999998754 999999999999999999999999999999976
Q ss_pred -----------------------------------hcccccc--ccccchHHHHHhhccCCCCCCccccChhhHHhhCCc
Q psy6351 63 -----------------------------------LLGAELK--NKQFLTTPVQIGLLSGRTSNGLNFINVNTYASEGGL 105 (168)
Q Consensus 63 -----------------------------------~~g~~~~--~~~~lt~a~l~~~L~~~~~~~vn~VNa~~la~~~GI 105 (168)
.|.|..+ +++.++.|.++|+|....++.+|++|+..+||++||
T Consensus 317 ~~~~~~~~~~~~~la~riG~~a~ql~~~~~~~v~i~~~Gsfa~t~~~~~d~A~l~GlLg~~~dd~~~~~nA~~iA~e~GI 396 (526)
T PRK13581 317 TAEEAEKLKPYLDLAEKLGSLAAQLADGPIKSVEITYRGELAEEDTEPLTAAALKGLLSPVLGERVNYVNAPLLAKERGI 396 (526)
T ss_pred chhhhHHhHHHHHHHHHHHHHHHHHcCCCceEEEEEEecccccccccHHHHHHHHHhCccccCCCccccCHHHHHHHcCC
Confidence 1223332 457899999999998776666999999999999999
Q ss_pred eEEEEECCCC--CCceEEEEEeecC-------------cccEEEEcceEeeccccccEEEEeecCCCCCc
Q psy6351 106 KVAYEHDPSS--SQNLVALAFGSNV-------------AKHVLTVKQGLFTELLSYSLILVLQEDTAQWS 160 (168)
Q Consensus 106 ~v~e~~~~~~--~~n~itv~~~~~~-------------~~~l~~i~~~~~~~~~eG~~li~r~~D~pg~~ 160 (168)
++.+.+.+.. ..|.++|++.++. ..+|++||+|.+++.++|++|+++|.|+||+-
T Consensus 397 ~~~~~~~~~~~~hpNtv~i~l~~~~~~~~v~G~s~ggg~~~I~~ing~~v~~~~~~~~li~~~~D~pG~I 466 (526)
T PRK13581 397 EVEESKSEESPDYSNLITVTVTTDDGERSVAGTVFGDGEPRIVEIDGYRVDAKPEGHMLIIRNRDRPGVI 466 (526)
T ss_pred EEEEEEecCCCCCCCEEEEEEEeCCeEEEEEEEEecCCceEEEEECCEEEEeeCCceEEEEEeCCcCChh
Confidence 9988776544 3888888875432 36899999999999999999999999999983
No 3
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=99.82 E-value=1.9e-20 Score=161.60 Aligned_cols=80 Identities=39% Similarity=0.491 Sum_probs=70.8
Q ss_pred CHHHHhcCCeeEEEeecCCCCCCCCCCChhhccCCceEEccCCCcchHHHHHHHHHHHHHHhhccccccccccchHHHHH
Q psy6351 1 MKSELRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIRQDKQSIFYSLLGAELKNKQFLTTPVQI 80 (168)
Q Consensus 1 L~~AL~~G~i~gAaLDVf~~EP~~~~~~~pL~~~~nvilTPHig~~T~ea~~~~~~~~~~~~~~g~~~~~~~~lt~a~l~ 80 (168)
|++||++|+|+||+||||++||++++ ||||++|||++|||+||+|.|++.+++.++++ ++.
T Consensus 243 L~~AL~~G~i~gA~lDVf~~EPl~~~--~pL~~~pnV~~TPHia~~T~ea~~~~~~~~~~-----------------~i~ 303 (324)
T COG0111 243 LLAALDSGKIAGAALDVFEEEPLPAD--SPLWDLPNVILTPHIGGSTDEAQERVAEIVAE-----------------NIV 303 (324)
T ss_pred HHHHHHcCCcceEEecCCCCCCCCCC--ChhhcCCCeEECCcccccCHHHHHHHHHHHHH-----------------HHH
Confidence 68999999999999999999999876 79999999999999999999999999999999 599
Q ss_pred hhccCCCCCCccccChhhHHhhC
Q psy6351 81 GLLSGRTSNGLNFINVNTYASEG 103 (168)
Q Consensus 81 ~~L~~~~~~~vn~VNa~~la~~~ 103 (168)
.|++| ..+.| |.+.+...+
T Consensus 304 ~~l~g--~~~~~--~~~~v~~~~ 322 (324)
T COG0111 304 RYLAG--GPVVN--NAPEVDLER 322 (324)
T ss_pred HHHcC--CCCCC--Ccccccccc
Confidence 99997 45556 666555443
No 4
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=99.78 E-value=5.4e-19 Score=156.55 Aligned_cols=78 Identities=32% Similarity=0.403 Sum_probs=70.1
Q ss_pred CHHHHhcCCeeEEEeecCCCCCCCCC--CChhhccCCceEEccCCCcchHHHHHHHHHHHHHHhhccccccccccchHHH
Q psy6351 1 MKSELRCGHCGGAALDVFCEEPPKSE--QTFELIKHPKVIVTPHLGASTKEAQIRQDKQSIFYSLLGAELKNKQFLTTPV 78 (168)
Q Consensus 1 L~~AL~~G~i~gAaLDVf~~EP~~~~--~~~pL~~~~nvilTPHig~~T~ea~~~~~~~~~~~~~~g~~~~~~~~lt~a~ 78 (168)
|++||++|+|+|||||||+.||++.+ ..+||+++|||++|||+||+|.|++.+++..+++ +
T Consensus 249 L~~aL~~g~i~gaalDVf~~EP~~~~~~~~~pL~~~~nvilTPHia~~t~ea~~~~~~~~~~-----------------n 311 (409)
T PRK11790 249 LADALKSGHLAGAAIDVFPVEPKSNGDPFESPLRGLDNVILTPHIGGSTQEAQENIGLEVAG-----------------K 311 (409)
T ss_pred HHHHHHcCCceEEEEcCCCCCCCCccccccchhhcCCCEEECCcCCCCHHHHHHHHHHHHHH-----------------H
Confidence 68999999999999999999997642 2369999999999999999999999999999999 5
Q ss_pred HHhhccCCCCCCccccChh
Q psy6351 79 QIGLLSGRTSNGLNFINVN 97 (168)
Q Consensus 79 l~~~L~~~~~~~vn~VNa~ 97 (168)
+..|+++ +...|.||.+
T Consensus 312 l~~~~~~--~~~~~~vn~~ 328 (409)
T PRK11790 312 LVKYSDN--GSTLSAVNFP 328 (409)
T ss_pred HHHHHcC--CCcCcceecc
Confidence 9999986 5788999975
No 5
>PRK13243 glyoxylate reductase; Reviewed
Probab=99.77 E-value=7.2e-19 Score=151.90 Aligned_cols=76 Identities=30% Similarity=0.389 Sum_probs=70.4
Q ss_pred CHHHHhcCCeeEEEeecCCCCCCCCCCChhhccCCceEEccCCCcchHHHHHHHHHHHHHHhhccccccccccchHHHHH
Q psy6351 1 MKSELRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIRQDKQSIFYSLLGAELKNKQFLTTPVQI 80 (168)
Q Consensus 1 L~~AL~~G~i~gAaLDVf~~EP~~~~~~~pL~~~~nvilTPHig~~T~ea~~~~~~~~~~~~~~g~~~~~~~~lt~a~l~ 80 (168)
|++||++|+|+|||||||++||+++ +|||++|||++|||+||+|.|++.+++..+++ +|.
T Consensus 250 L~~aL~~g~i~gAaLDV~~~EP~~~---~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~-----------------ni~ 309 (333)
T PRK13243 250 LVKALKEGWIAGAGLDVFEEEPYYN---EELFSLKNVVLAPHIGSATFEAREGMAELVAE-----------------NLI 309 (333)
T ss_pred HHHHHHcCCeEEEEeccCCCCCCCC---chhhcCCCEEECCcCCcCHHHHHHHHHHHHHH-----------------HHH
Confidence 6899999999999999999999874 49999999999999999999999999999999 599
Q ss_pred hhccCCCCCCccccChhh
Q psy6351 81 GLLSGRTSNGLNFINVNT 98 (168)
Q Consensus 81 ~~L~~~~~~~vn~VNa~~ 98 (168)
.|++| +.+.|.||...
T Consensus 310 ~~~~g--~~~~~~v~~~~ 325 (333)
T PRK13243 310 AFKRG--EVPPTLVNREV 325 (333)
T ss_pred HHHcC--CCCCcccCHHH
Confidence 99987 56889999876
No 6
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=99.77 E-value=6.4e-19 Score=151.85 Aligned_cols=76 Identities=29% Similarity=0.442 Sum_probs=69.5
Q ss_pred CHHHHhcCCeeEEEeecCCCCCCCCCCChhhccCCceEEccCCCcchHHHHHHHHHHHHHHhhccccccccccchHHHHH
Q psy6351 1 MKSELRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIRQDKQSIFYSLLGAELKNKQFLTTPVQI 80 (168)
Q Consensus 1 L~~AL~~G~i~gAaLDVf~~EP~~~~~~~pL~~~~nvilTPHig~~T~ea~~~~~~~~~~~~~~g~~~~~~~~lt~a~l~ 80 (168)
|++||++|+|+|||||||++||++.+ +||+++|||++|||+||.|.|++.+++..+++ ++.
T Consensus 246 L~~AL~~g~i~gAaLDVf~~EP~~~~--~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~-----------------ni~ 306 (323)
T PRK15409 246 LIAALQKGEIHAAGLDVFEQEPLSVD--SPLLSLPNVVAVPHIGSATHETRYNMAACAVD-----------------NLI 306 (323)
T ss_pred HHHHHHcCCeeEEEeecCCCCCCCCC--chhhcCCCEEEcCcCCCCcHHHHHHHHHHHHH-----------------HHH
Confidence 68999999999999999999998744 59999999999999999999999999999999 599
Q ss_pred hhccCCCCCCccccChh
Q psy6351 81 GLLSGRTSNGLNFINVN 97 (168)
Q Consensus 81 ~~L~~~~~~~vn~VNa~ 97 (168)
.|++| +.+.|.||+.
T Consensus 307 ~~~~g--~~~~~~vn~~ 321 (323)
T PRK15409 307 DALQG--KVEKNCVNPQ 321 (323)
T ss_pred HHHcC--CCCCcccCcc
Confidence 99987 4688999853
No 7
>KOG0068|consensus
Probab=99.77 E-value=2.3e-19 Score=154.82 Aligned_cols=105 Identities=40% Similarity=0.565 Sum_probs=85.1
Q ss_pred CHHHHhcCCeeEEEeecCCCCCCCCCCChhhccCCceEEccCCCcchHHHHHHHHHHHHHHh------------------
Q psy6351 1 MKSELRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIRQDKQSIFYS------------------ 62 (168)
Q Consensus 1 L~~AL~~G~i~gAaLDVf~~EP~~~~~~~pL~~~~nvilTPHig~~T~ea~~~~~~~~~~~~------------------ 62 (168)
|++||++|+++|||+|||++||+....++.|.++|||++|||+|++|.|||.+++.++++++
T Consensus 246 Lv~Al~sG~vaGaAlDVy~~Epp~~~~~~~Lv~hpnVi~TpHlgasT~EAq~~iaievaea~~~~~~~~~~g~Vna~~v~ 325 (406)
T KOG0068|consen 246 LVRALDSGQVAGAALDVYPEEPPKNGWDSELVSHPNVIVTPHLGASTEEAQSRIAIEVAEAVSDYINGNSAGSVNAPEVA 325 (406)
T ss_pred HHHHHhcCcccceeeecccCCCCccchhHHHhcCCceeecCccccchHHHHHHHHHHHHHHHHHHhccCccceechhhhh
Confidence 68999999999999999999999853346999999999999999999999999999999975
Q ss_pred ---------------hcc-----------ccc-----------cccccchHHHHHhhccCCCCCCccccChhhHHhhCCc
Q psy6351 63 ---------------LLG-----------AEL-----------KNKQFLTTPVQIGLLSGRTSNGLNFINVNTYASEGGL 105 (168)
Q Consensus 63 ---------------~~g-----------~~~-----------~~~~~lt~a~l~~~L~~~~~~~vn~VNa~~la~~~GI 105 (168)
..| |.. .++..+.+.+.++..++..+..+|+||++..+|+||+
T Consensus 326 ~~~l~~~~~~~~~a~~l~r~~~~~~~~~~~~~~~~~~~~s~~~~d~~~l~A~i~~~~~e~i~~~~~nLvn~~~~~k~r~l 405 (406)
T KOG0068|consen 326 LESLTELKPNIVLAEKLGRLVPGVLKGVNGVLSVHNIYKSFSDGDIALLRADISKGIIEPIKDIYVNLVNADAKAKQRGL 405 (406)
T ss_pred hhhhhccCchhHHHHHHhhhhHHHhcCCccceeeeehhhhccccceeeeHHHHhccCcchHHHHHHHHhccchhhhhhcc
Confidence 000 111 1345566666666666655567899999999999996
No 8
>PRK06487 glycerate dehydrogenase; Provisional
Probab=99.74 E-value=4.5e-18 Score=146.06 Aligned_cols=73 Identities=36% Similarity=0.530 Sum_probs=66.1
Q ss_pred CHHHHhcCCeeEEEeecCCCCCCCCCCChhhcc--CCceEEccCCCcchHHHHHHHHHHHHHHhhccccccccccchHHH
Q psy6351 1 MKSELRCGHCGGAALDVFCEEPPKSEQTFELIK--HPKVIVTPHLGASTKEAQIRQDKQSIFYSLLGAELKNKQFLTTPV 78 (168)
Q Consensus 1 L~~AL~~G~i~gAaLDVf~~EP~~~~~~~pL~~--~~nvilTPHig~~T~ea~~~~~~~~~~~~~~g~~~~~~~~lt~a~ 78 (168)
|++||++|+|+|||||||+.||++.+ +|||. +|||++|||+||+|.|++.+++..+++ +
T Consensus 243 L~~AL~~g~i~gAaLDVf~~EP~~~~--~pl~~~~~pnvilTPHia~~t~e~~~~~~~~~~~-----------------n 303 (317)
T PRK06487 243 LADALRSGHLGGAATDVLSVEPPVNG--NPLLAPDIPRLIVTPHSAWGSREARQRIVGQLAE-----------------N 303 (317)
T ss_pred HHHHHHcCCeeEEEeecCCCCCCCCC--CchhhcCCCCEEECCccccCCHHHHHHHHHHHHH-----------------H
Confidence 68999999999999999999998754 69995 899999999999999999999999999 5
Q ss_pred HHhhccCCCCCCccccC
Q psy6351 79 QIGLLSGRTSNGLNFIN 95 (168)
Q Consensus 79 l~~~L~~~~~~~vn~VN 95 (168)
|..|++| ++.|.||
T Consensus 304 i~~~~~g---~~~~~v~ 317 (317)
T PRK06487 304 ARAFFAG---KPLRVVS 317 (317)
T ss_pred HHHHHcC---CCCcCCC
Confidence 9999986 4667765
No 9
>PLN02928 oxidoreductase family protein
Probab=99.73 E-value=7.6e-18 Score=146.39 Aligned_cols=76 Identities=34% Similarity=0.541 Sum_probs=65.9
Q ss_pred CHHHHhcCCeeEEEeecCCCCCCCCCCChhhccCCceEEccCCCcchHHHHHHHHHHHHHHhhccccccccccchHHHHH
Q psy6351 1 MKSELRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIRQDKQSIFYSLLGAELKNKQFLTTPVQI 80 (168)
Q Consensus 1 L~~AL~~G~i~gAaLDVf~~EP~~~~~~~pL~~~~nvilTPHig~~T~ea~~~~~~~~~~~~~~g~~~~~~~~lt~a~l~ 80 (168)
|++||++|+|+|||||||++||++.+ +|||++|||++|||+||.|.+++.+++..+++ ++.
T Consensus 272 L~~AL~~g~i~gAaLDV~~~EP~~~~--~pL~~~~nviiTPHia~~t~~~~~~~~~~~~~-----------------nl~ 332 (347)
T PLN02928 272 VLAALESGHLGGLAIDVAWSEPFDPD--DPILKHPNVIITPHVAGVTEYSYRSMGKIVGD-----------------AAL 332 (347)
T ss_pred HHHHHHcCCeeEEEEccCCCCCCCCC--ChhhcCCCEEECCcCCCChHHHHHHHHHHHHH-----------------HHH
Confidence 68999999999999999999997654 59999999999999999999999999999999 599
Q ss_pred hhccCCCCCCccccC
Q psy6351 81 GLLSGRTSNGLNFIN 95 (168)
Q Consensus 81 ~~L~~~~~~~vn~VN 95 (168)
.|++|..-..+.+||
T Consensus 333 ~~~~g~~~~~~~~~~ 347 (347)
T PLN02928 333 QLHAGRPLTGIEFVN 347 (347)
T ss_pred HHHCCCCCCceeecC
Confidence 999874333344443
No 10
>PLN03139 formate dehydrogenase; Provisional
Probab=99.72 E-value=1.3e-17 Score=147.07 Aligned_cols=76 Identities=24% Similarity=0.341 Sum_probs=67.7
Q ss_pred CHHHHhcCCeeEEEeecCCCCCCCCCCChhhccCCceEEccCCCcchHHHHHHHHHHHHHHhhccccccccccchHHHHH
Q psy6351 1 MKSELRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIRQDKQSIFYSLLGAELKNKQFLTTPVQI 80 (168)
Q Consensus 1 L~~AL~~G~i~gAaLDVf~~EP~~~~~~~pL~~~~nvilTPHig~~T~ea~~~~~~~~~~~~~~g~~~~~~~~lt~a~l~ 80 (168)
|++||++|+|+|||||||++||++.+ +|||.+|||++|||+||.|.+++.+++..+++ +|.
T Consensus 301 L~~AL~sG~l~GAaLDV~~~EPlp~d--~pL~~~pNvilTPHiag~t~~~~~r~~~~~~~-----------------nl~ 361 (386)
T PLN03139 301 VADACSSGHIGGYGGDVWYPQPAPKD--HPWRYMPNHAMTPHISGTTIDAQLRYAAGVKD-----------------MLD 361 (386)
T ss_pred HHHHHHcCCceEEEEcCCCCCCCCCC--ChhhcCCCeEEcccccccCHHHHHHHHHHHHH-----------------HHH
Confidence 68999999999999999999998755 69999999999999999999999999999999 599
Q ss_pred hhccCCCCCCccccC
Q psy6351 81 GLLSGRTSNGLNFIN 95 (168)
Q Consensus 81 ~~L~~~~~~~vn~VN 95 (168)
.|++|..-.+.|+|.
T Consensus 362 ~~~~G~~~~~~~~i~ 376 (386)
T PLN03139 362 RYFKGEDFPAQNYIV 376 (386)
T ss_pred HHHcCCCCCCcceee
Confidence 999875334566654
No 11
>PLN02306 hydroxypyruvate reductase
Probab=99.71 E-value=1.7e-17 Score=146.22 Aligned_cols=73 Identities=22% Similarity=0.263 Sum_probs=68.1
Q ss_pred CHHHHhcCCeeEEEeecCCCCCCCCCCChhhccCCceEEccCCCcchHHHHHHHHHHHHHHhhccccccccccchHHHHH
Q psy6351 1 MKSELRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIRQDKQSIFYSLLGAELKNKQFLTTPVQI 80 (168)
Q Consensus 1 L~~AL~~G~i~gAaLDVf~~EP~~~~~~~pL~~~~nvilTPHig~~T~ea~~~~~~~~~~~~~~g~~~~~~~~lt~a~l~ 80 (168)
|++||++|+|+|||||||++||++++ ||+++|||++|||+||+|.+++.+++..+++ ++.
T Consensus 282 L~~AL~sg~i~gAaLDVf~~EP~~~~---~L~~~pNVilTPHiag~T~e~~~~~~~~~~~-----------------ni~ 341 (386)
T PLN02306 282 LVEHLKANPMFRVGLDVFEDEPYMKP---GLADMKNAVVVPHIASASKWTREGMATLAAL-----------------NVL 341 (386)
T ss_pred HHHHHHhCCeeEEEEeCCCCCCCCcc---hHhhCCCEEECCccccCcHHHHHHHHHHHHH-----------------HHH
Confidence 68999999999999999999998765 9999999999999999999999999999999 599
Q ss_pred hhccCCCCCCccccC
Q psy6351 81 GLLSGRTSNGLNFIN 95 (168)
Q Consensus 81 ~~L~~~~~~~vn~VN 95 (168)
.|++| +.+.|.||
T Consensus 342 ~~~~g--~~~~~~~~ 354 (386)
T PLN02306 342 GKLKG--YPVWGDPN 354 (386)
T ss_pred HHHcC--CCCccccc
Confidence 99986 57889998
No 12
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=99.70 E-value=2.2e-17 Score=142.63 Aligned_cols=76 Identities=22% Similarity=0.354 Sum_probs=66.7
Q ss_pred CHHHHhcCCeeEEEeecCCCCCCC----------C-CCChhhccCCceEEccCCCcchHHHHHHHHHHHHHHhhcccccc
Q psy6351 1 MKSELRCGHCGGAALDVFCEEPPK----------S-EQTFELIKHPKVIVTPHLGASTKEAQIRQDKQSIFYSLLGAELK 69 (168)
Q Consensus 1 L~~AL~~G~i~gAaLDVf~~EP~~----------~-~~~~pL~~~~nvilTPHig~~T~ea~~~~~~~~~~~~~~g~~~~ 69 (168)
|++||++|+|+|||||||++||+. + +..+||+++|||++|||+|+.|.+++.++.+.+++
T Consensus 244 L~~aL~~g~i~gaalDV~~~EP~~~~~~~~~~~~~~~~~~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~--------- 314 (330)
T PRK12480 244 LIAAVNDGTLLGAAIDTYENEAAYFTNDWTNKDIDDKTLLELIEHERILVTPHIAFFSDEAVQNLVEGGLN--------- 314 (330)
T ss_pred HHHHHHcCCeeEEEEeccCCCCccccccccccccCchhhHHHhcCCCEEECCcccccHHHHHHHHHHHHHH---------
Confidence 689999999999999999999952 1 22358999999999999999999999999999999
Q ss_pred ccccchHHHHHhhccCCCCCCccccC
Q psy6351 70 NKQFLTTPVQIGLLSGRTSNGLNFIN 95 (168)
Q Consensus 70 ~~~~lt~a~l~~~L~~~~~~~vn~VN 95 (168)
+++.|+++ +.+.|.||
T Consensus 315 --------n~~~~~~~--~~~~~~~~ 330 (330)
T PRK12480 315 --------AALSVINT--GTCETRLN 330 (330)
T ss_pred --------HHHHHHhC--CCCcccCC
Confidence 59999986 57777776
No 13
>PRK07574 formate dehydrogenase; Provisional
Probab=99.69 E-value=3.5e-17 Score=144.22 Aligned_cols=66 Identities=26% Similarity=0.365 Sum_probs=62.2
Q ss_pred CHHHHhcCCeeEEEeecCCCCCCCCCCChhhccCCceEEccCCCcchHHHHHHHHHHHHHHhhccccccccccchHHHHH
Q psy6351 1 MKSELRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIRQDKQSIFYSLLGAELKNKQFLTTPVQI 80 (168)
Q Consensus 1 L~~AL~~G~i~gAaLDVf~~EP~~~~~~~pL~~~~nvilTPHig~~T~ea~~~~~~~~~~~~~~g~~~~~~~~lt~a~l~ 80 (168)
|++||++|+|+|||||||++||++.+ +|||++|||++|||+||+|.+++.+++..+++ +|.
T Consensus 294 L~~AL~sG~i~GAaLDV~~~EPlp~d--~pL~~~pNvilTPHiag~T~e~~~~~~~~~~~-----------------ni~ 354 (385)
T PRK07574 294 VVRALESGHLAGYAGDVWFPQPAPAD--HPWRTMPRNGMTPHISGTTLSAQARYAAGTRE-----------------ILE 354 (385)
T ss_pred HHHHHHhCCccEEEEecCCCCCCCCC--ChHHhCCCeEECCccccCcHHHHHHHHHHHHH-----------------HHH
Confidence 68999999999999999999998755 69999999999999999999999999999999 599
Q ss_pred hhccC
Q psy6351 81 GLLSG 85 (168)
Q Consensus 81 ~~L~~ 85 (168)
.|++|
T Consensus 355 ~~~~G 359 (385)
T PRK07574 355 CFFEG 359 (385)
T ss_pred HHHcC
Confidence 99986
No 14
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=99.69 E-value=2.1e-16 Score=128.64 Aligned_cols=96 Identities=10% Similarity=0.079 Sum_probs=81.6
Q ss_pred hccccccc---cccchHHHHHhhccCCCCCCccccChhhHHhhCCceEEEEECCC---CCCceEEEEEeecC--------
Q psy6351 63 LLGAELKN---KQFLTTPVQIGLLSGRTSNGLNFINVNTYASEGGLKVAYEHDPS---SSQNLVALAFGSNV-------- 128 (168)
Q Consensus 63 ~~g~~~~~---~~~lt~a~l~~~L~~~~~~~vn~VNa~~la~~~GI~v~e~~~~~---~~~n~itv~~~~~~-------- 128 (168)
.|.|++++ +.+++.|.|+|+|....+ .+|+|||..+||+|||+|.+.+.+. .+.|+|++++.++.
T Consensus 46 ~~~Gsla~t~~~~~~~~A~l~GlL~~~~~-~vn~vNA~~iAkerGI~v~~~~~~~~~~~~~n~v~i~v~~~~g~~~~v~G 124 (208)
T TIGR00719 46 QFHGSFAETFKGHGTDRAIIGGILDFDPD-DDRIKTAFEIAEAAGIDIEFRTEDAGDNVHPNSAKITFSDEKGEEEELIG 124 (208)
T ss_pred EEEeeecccCCCchHHHHHHhhhcCCCCC-chHHHHHHhhhhhcCceEEEEECCCCCCCCCCeEEEEEEcCCCCEEEEEE
Confidence 55666653 479999999999998765 5999999999999999999987764 34899998875432
Q ss_pred ------cccEEEEcceEeeccccccEEEEeecCCCCC
Q psy6351 129 ------AKHVLTVKQGLFTELLSYSLILVLQEDTAQW 159 (168)
Q Consensus 129 ------~~~l~~i~~~~~~~~~eG~~li~r~~D~pg~ 159 (168)
..++++||+|.+++.|+|+||+++|.|+||+
T Consensus 125 ts~ggg~~riv~idg~~vd~~~~g~~L~~~~~D~PG~ 161 (208)
T TIGR00719 125 ISIGGGAIEITEINGFAIEFRGEHPAILLEHNDKFGT 161 (208)
T ss_pred EEeCCCeEEEEEECCEEEEecCCccEEEEEeCCCCCh
Confidence 3688999999999999999999999999998
No 15
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=99.68 E-value=5.6e-17 Score=139.21 Aligned_cols=74 Identities=31% Similarity=0.415 Sum_probs=65.3
Q ss_pred CHHHHhcCCeeEEEeecCCCCCCCCCCChhhccCCceEEccCCCcchHHHHHHHHHHHHHHhhccccccccccchHHHHH
Q psy6351 1 MKSELRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIRQDKQSIFYSLLGAELKNKQFLTTPVQI 80 (168)
Q Consensus 1 L~~AL~~G~i~gAaLDVf~~EP~~~~~~~pL~~~~nvilTPHig~~T~ea~~~~~~~~~~~~~~g~~~~~~~~lt~a~l~ 80 (168)
|++||++|+|+|||||||+.||++.+ +|||++|||++|||+||+|.++ ++...+++ |++
T Consensus 236 L~~aL~~g~i~gaalDVf~~EPl~~~--~pl~~~~nvi~TPHiag~t~~~--~~~~~~~~-----------------n~~ 294 (312)
T PRK15469 236 LLAALDSGKVKGAMLDVFSREPLPPE--SPLWQHPRVAITPHVAAVTRPA--EAVEYISR-----------------TIA 294 (312)
T ss_pred HHHHHhcCCeeeEEecCCCCCCCCCC--ChhhcCCCeEECCcCCCCcCHH--HHHHHHHH-----------------HHH
Confidence 68999999999999999999998755 6999999999999999999886 46788888 599
Q ss_pred hhccCCCCCCccccChh
Q psy6351 81 GLLSGRTSNGLNFINVN 97 (168)
Q Consensus 81 ~~L~~~~~~~vn~VNa~ 97 (168)
.|++| +.+.|.||..
T Consensus 295 ~~~~g--~~~~~~V~~~ 309 (312)
T PRK15469 295 QLEKG--ERVCGQVDRA 309 (312)
T ss_pred HHHcC--CCCcccCCcc
Confidence 99987 5788998843
No 16
>PRK06932 glycerate dehydrogenase; Provisional
Probab=99.67 E-value=7.1e-17 Score=138.58 Aligned_cols=66 Identities=27% Similarity=0.452 Sum_probs=60.7
Q ss_pred CHHHHhcCCeeEEEeecCCCCCCCCCCChhhc----cCCceEEccCCCcchHHHHHHHHHHHHHHhhccccccccccchH
Q psy6351 1 MKSELRCGHCGGAALDVFCEEPPKSEQTFELI----KHPKVIVTPHLGASTKEAQIRQDKQSIFYSLLGAELKNKQFLTT 76 (168)
Q Consensus 1 L~~AL~~G~i~gAaLDVf~~EP~~~~~~~pL~----~~~nvilTPHig~~T~ea~~~~~~~~~~~~~~g~~~~~~~~lt~ 76 (168)
|++||++|+|+|||||||+.||++.+ +||| ++|||++|||+||+|.+++.+++..+++
T Consensus 243 L~~aL~~g~i~gAaLDV~~~EP~~~~--~pl~~~~~~~pnvilTPHia~~t~e~~~~~~~~~~~---------------- 304 (314)
T PRK06932 243 LLDALENGKIAGAALDVLVKEPPEKD--NPLIQAAKRLPNLLITPHIAWASDSAVTTLVNKVAQ---------------- 304 (314)
T ss_pred HHHHHHcCCccEEEEecCCCCCCCCC--ChhhHhhcCCCCEEECCccccCcHHHHHHHHHHHHH----------------
Confidence 68999999999999999999998754 5998 5999999999999999999999999999
Q ss_pred HHHHhhccC
Q psy6351 77 PVQIGLLSG 85 (168)
Q Consensus 77 a~l~~~L~~ 85 (168)
++..|+++
T Consensus 305 -ni~~~~~~ 312 (314)
T PRK06932 305 -NIEEFVQQ 312 (314)
T ss_pred -HHHHHHhc
Confidence 59999875
No 17
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=99.66 E-value=1.4e-16 Score=137.53 Aligned_cols=75 Identities=28% Similarity=0.439 Sum_probs=67.4
Q ss_pred CHHHHhcCCeeEEEeecCCCCCCCCCCChhhccCCc---eEEccCCCcchHHHHHHHHHHHHHHhhccccccccccchHH
Q psy6351 1 MKSELRCGHCGGAALDVFCEEPPKSEQTFELIKHPK---VIVTPHLGASTKEAQIRQDKQSIFYSLLGAELKNKQFLTTP 77 (168)
Q Consensus 1 L~~AL~~G~i~gAaLDVf~~EP~~~~~~~pL~~~~n---vilTPHig~~T~ea~~~~~~~~~~~~~~g~~~~~~~~lt~a 77 (168)
|++||++|+|+|||||||++||...+ +||++++| |++|||+|+.|.|++.+|+..+++
T Consensus 246 Li~AL~~g~i~gaglDV~e~Ep~~~d--~~l~~l~~~~~vvltPHia~at~ea~~~m~~~~~~----------------- 306 (324)
T COG1052 246 LIDALKSGKIAGAGLDVFENEPALFD--HPLLRLDNFPNVVLTPHIASATEEARKAMAELALE----------------- 306 (324)
T ss_pred HHHHHHhCCcceEEeeecCCCCCCCC--hhHhhccCCCCEEEccccccccHHHHHHHHHHHHH-----------------
Confidence 68999999999999999999998633 49998877 999999999999999999999999
Q ss_pred HHHhhccCCCCCCccccCh
Q psy6351 78 VQIGLLSGRTSNGLNFINV 96 (168)
Q Consensus 78 ~l~~~L~~~~~~~vn~VNa 96 (168)
|+..|+++ +.+.|.||.
T Consensus 307 nl~~~~~g--~~~~~~v~~ 323 (324)
T COG1052 307 NLEAFFDG--GVPPNEVNP 323 (324)
T ss_pred HHHHHHcC--CCCCCCCCC
Confidence 59999986 578888875
No 18
>PRK08605 D-lactate dehydrogenase; Validated
Probab=99.65 E-value=2.7e-16 Score=135.82 Aligned_cols=76 Identities=28% Similarity=0.292 Sum_probs=64.9
Q ss_pred CHHHHhcCCeeEEEeecCCCCCC--CCC---------CChhhccCCceEEccCCCcchHHHHHHHHHHHHHHhhcccccc
Q psy6351 1 MKSELRCGHCGGAALDVFCEEPP--KSE---------QTFELIKHPKVIVTPHLGASTKEAQIRQDKQSIFYSLLGAELK 69 (168)
Q Consensus 1 L~~AL~~G~i~gAaLDVf~~EP~--~~~---------~~~pL~~~~nvilTPHig~~T~ea~~~~~~~~~~~~~~g~~~~ 69 (168)
|++||++|+|+|||||||+.||+ +.+ ...+|+++|||++|||+|++|.|++++++..+++
T Consensus 246 L~~aL~~g~i~gaalDV~~~Ep~~~~~~~~~~~~~~~~~~~L~~~~nvilTPHia~~t~e~~~~~~~~~~~--------- 316 (332)
T PRK08605 246 LLDALDNGLIKGAALDTYEFERPLFPSDQRGQTINDPLLESLINREDVILTPHIAFYTDAAVKNLIVDALD--------- 316 (332)
T ss_pred HHHHHHhCCeeEEEEecccCCCCccccccccccccchhhHHHhcCCCEEECCcccccHHHHHHHHHHHHHH---------
Confidence 57899999999999999999983 222 1125999999999999999999999999999999
Q ss_pred ccccchHHHHHhhccCCCCCCccccC
Q psy6351 70 NKQFLTTPVQIGLLSGRTSNGLNFIN 95 (168)
Q Consensus 70 ~~~~lt~a~l~~~L~~~~~~~vn~VN 95 (168)
++..|++| +...|.||
T Consensus 317 --------n~~~~~~g--~~~~~~~~ 332 (332)
T PRK08605 317 --------ATLEVLQT--GTTRLRVN 332 (332)
T ss_pred --------HHHHHHcC--CCCCCCcC
Confidence 59999986 46667765
No 19
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=99.65 E-value=2.2e-16 Score=135.28 Aligned_cols=65 Identities=26% Similarity=0.319 Sum_probs=60.2
Q ss_pred CHHHHhcCCeeEEEeecCCCCCCCCCCChhhccC---CceEEccCCCcchHHHHHHHHHHHHHHhhccccccccccchHH
Q psy6351 1 MKSELRCGHCGGAALDVFCEEPPKSEQTFELIKH---PKVIVTPHLGASTKEAQIRQDKQSIFYSLLGAELKNKQFLTTP 77 (168)
Q Consensus 1 L~~AL~~G~i~gAaLDVf~~EP~~~~~~~pL~~~---~nvilTPHig~~T~ea~~~~~~~~~~~~~~g~~~~~~~~lt~a 77 (168)
|++||++|+|+ ||||||++||++.+ +||+++ |||++|||+||+|.|++.+++..+++
T Consensus 242 L~~AL~~g~i~-AaLDV~~~EP~~~~--~pL~~~~~~~NvilTPH~a~~t~e~~~~~~~~~~~----------------- 301 (311)
T PRK08410 242 LAKALDEKDIY-AGLDVLEKEPMEKN--HPLLSIKNKEKLLITPHIAWASKEARKTLIEKVKE----------------- 301 (311)
T ss_pred HHHHHHcCCeE-EEEecCCCCCCCCC--ChhhccCCCCCEEECCccccCCHHHHHHHHHHHHH-----------------
Confidence 68999999999 99999999998754 699987 89999999999999999999999999
Q ss_pred HHHhhccC
Q psy6351 78 VQIGLLSG 85 (168)
Q Consensus 78 ~l~~~L~~ 85 (168)
++..|++|
T Consensus 302 nl~~~~~g 309 (311)
T PRK08410 302 NIKDFLEG 309 (311)
T ss_pred HHHHHHcC
Confidence 59999886
No 20
>KOG0069|consensus
Probab=99.55 E-value=5.5e-15 Score=128.07 Aligned_cols=65 Identities=31% Similarity=0.570 Sum_probs=61.1
Q ss_pred CHHHHhcCCeeEEEeecCCCCCCCCCCChhhccCCceEEccCCCcchHHHHHHHHHHHHHHhhccccccccccchHHHHH
Q psy6351 1 MKSELRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIRQDKQSIFYSLLGAELKNKQFLTTPVQI 80 (168)
Q Consensus 1 L~~AL~~G~i~gAaLDVf~~EP~~~~~~~pL~~~~nvilTPHig~~T~ea~~~~~~~~~~~~~~g~~~~~~~~lt~a~l~ 80 (168)
|++||++|+|+|||||||++||+.++ ||+.++|+++|||+|+.|.+++.+|+..++. ++.
T Consensus 263 l~eaL~sG~i~~aGlDVf~~EP~~~~---~l~~~dnvv~~PHigs~t~~t~~~m~~~v~~-----------------n~~ 322 (336)
T KOG0069|consen 263 LVEALKSGKIAGAGLDVFEPEPPVDH---PLLTLDNVVILPHIGSATLETREKMAEIVLN-----------------NLL 322 (336)
T ss_pred HHHHHhcCCcccccccccCCCCCCCc---chhcccceeEecccccCcHHHHHHHHHHHHH-----------------HHH
Confidence 57999999999999999999996666 9999999999999999999999999999999 588
Q ss_pred hhccC
Q psy6351 81 GLLSG 85 (168)
Q Consensus 81 ~~L~~ 85 (168)
+++++
T Consensus 323 ~~~~g 327 (336)
T KOG0069|consen 323 AFFSG 327 (336)
T ss_pred HHHcc
Confidence 88886
No 21
>PRK06436 glycerate dehydrogenase; Provisional
Probab=99.55 E-value=1.1e-14 Score=124.77 Aligned_cols=74 Identities=22% Similarity=0.219 Sum_probs=64.2
Q ss_pred CHHHHhcCCeeEEEeecCCCCCCCCCCChhhccCCceEEccCCC-cchHHHHHHHHHHHHHHhhccccccccccchHHHH
Q psy6351 1 MKSELRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLG-ASTKEAQIRQDKQSIFYSLLGAELKNKQFLTTPVQ 79 (168)
Q Consensus 1 L~~AL~~G~i~gAaLDVf~~EP~~~~~~~pL~~~~nvilTPHig-~~T~ea~~~~~~~~~~~~~~g~~~~~~~~lt~a~l 79 (168)
|++||++|+++||+||||++||++++ + .+|||++|||++ ++|.++++++...+++ ++
T Consensus 219 L~~aL~~g~i~~a~lDV~~~EP~~~~--~---~~~nviiTPHi~g~~t~e~~~~~~~~~~~-----------------ni 276 (303)
T PRK06436 219 MLNFLRNHNDKYYLSDVWWNEPIITE--T---NPDNVILSPHVAGGMSGEIMQPAVALAFE-----------------NI 276 (303)
T ss_pred HHHHHHcCCceEEEEccCCCCCCCcc--C---CCCCEEECCccccccCHHHHHHHHHHHHH-----------------HH
Confidence 67999999999999999999998755 2 689999999976 5899999999999999 59
Q ss_pred HhhccCCCCCCccccChhhH
Q psy6351 80 IGLLSGRTSNGLNFINVNTY 99 (168)
Q Consensus 80 ~~~L~~~~~~~vn~VNa~~l 99 (168)
..|++| .+.|.||.+..
T Consensus 277 ~~~~~g---~~~~~V~~~~y 293 (303)
T PRK06436 277 KNFFEG---KPKNIVRKEEY 293 (303)
T ss_pred HHHHcC---CCCceEchHHh
Confidence 999986 35799987644
No 22
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=99.49 E-value=4.5e-14 Score=124.44 Aligned_cols=57 Identities=28% Similarity=0.322 Sum_probs=53.2
Q ss_pred CHHHHhcCCeeEEEeecCCCCCCCCCCChhhccCCceEEccCCCcchHHHHHHHHHHHHHH
Q psy6351 1 MKSELRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIRQDKQSIFY 61 (168)
Q Consensus 1 L~~AL~~G~i~gAaLDVf~~EP~~~~~~~pL~~~~nvilTPHig~~T~ea~~~~~~~~~~~ 61 (168)
|++||++|+++||+||||++||++++ +|+.. |+++|||+||+|.|++.++..+++++
T Consensus 217 L~~aL~~g~i~~a~LDV~e~EP~~~~---~L~~~-nvi~TPHiAg~s~e~~~r~~~~~~~n 273 (381)
T PRK00257 217 LREALLSGEDLDAVLDVWEGEPQIDL---ELADL-CTIATPHIAGYSLDGKARGTAQIYQA 273 (381)
T ss_pred HHHHHHhCCCcEEEEeCCCCCCCCCh---hhhhC-CEEEcCccccCCHHHHHHHHHHHHHH
Confidence 67999999999999999999997665 89986 99999999999999999999999995
No 23
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=99.45 E-value=1.1e-13 Score=121.84 Aligned_cols=57 Identities=32% Similarity=0.343 Sum_probs=52.6
Q ss_pred CHHHHhcCCeeEEEeecCCCCCCCCCCChhhccCCceEEccCCCcchHHHHHHHHHHHHHH
Q psy6351 1 MKSELRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIRQDKQSIFY 61 (168)
Q Consensus 1 L~~AL~~G~i~gAaLDVf~~EP~~~~~~~pL~~~~nvilTPHig~~T~ea~~~~~~~~~~~ 61 (168)
|++||++|+++||+||||++||.+++ +|+..++ ++|||+||+|.|++.++..+++++
T Consensus 217 L~~aL~~g~~~ga~LDV~e~EP~~~~---~Ll~~~~-i~TPHiAg~s~e~~~~~~~~~~~~ 273 (378)
T PRK15438 217 LLTCLNEGQKLSVVLDVWEGEPELNV---ELLKKVD-IGTPHIAGYTLEGKARGTTQVFEA 273 (378)
T ss_pred HHHHHHhCCCcEEEEecCCCCCCCch---hhhhcCC-EECCccCcCcHHHHHHHHHHHHHH
Confidence 68999999999999999999998765 8887765 999999999999999999999995
No 24
>KOG0067|consensus
Probab=96.44 E-value=0.0022 Score=56.99 Aligned_cols=80 Identities=21% Similarity=0.275 Sum_probs=60.0
Q ss_pred CHHHHhcCCeeEEEeecCCCCCCCCCCChhhccCCceEEccCCCcchHHHHHHHHHHHHHHhhccccccccccchHHHHH
Q psy6351 1 MKSELRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIRQDKQSIFYSLLGAELKNKQFLTTPVQI 80 (168)
Q Consensus 1 L~~AL~~G~i~gAaLDVf~~EP~~~~~~~pL~~~~nvilTPHig~~T~ea~~~~~~~~~~~~~~g~~~~~~~~lt~a~l~ 80 (168)
|.+||+.|++.+++ |.. ....||-+.||.++|||.++.++.+..++.+.++.. ++
T Consensus 279 LaqaLk~G~i~~aa-------~~~-~~~~~l~d~pn~ic~~~ta~~~e~~~~e~re~aa~e-----------------iR 333 (435)
T KOG0067|consen 279 LAQALKSGRIRGAA-------PRS-FKQGPLKDAPNLICTPHTAWYSEAASVELREVAALE-----------------IR 333 (435)
T ss_pred HHhhhccCceeccc-------Ccc-cccccccCCCCCCCCcccchhhHHHHHHHHHHHhhh-----------------hh
Confidence 57899999999999 222 123588888999999999999999999998888873 65
Q ss_pred hhccCCC-CCCccccChhhHHhhCCc
Q psy6351 81 GLLSGRT-SNGLNFINVNTYASEGGL 105 (168)
Q Consensus 81 ~~L~~~~-~~~vn~VNa~~la~~~GI 105 (168)
..+.|.. +...|+||.+++-...-.
T Consensus 334 ~ai~g~ip~~l~~cvnkE~~~~~~p~ 359 (435)
T KOG0067|consen 334 RAITGRIPDSLRNCVNKEFSPTNAPW 359 (435)
T ss_pred hccCCCCchhHHHHHhhhhccccCCc
Confidence 5555422 345688888877654444
No 25
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=92.87 E-value=0.15 Score=37.90 Aligned_cols=32 Identities=25% Similarity=0.178 Sum_probs=28.2
Q ss_pred cchHHHHHHHHHHHHHHhhccccccccccchHHHHHhhccCCCCCCccccC
Q psy6351 45 ASTKEAQIRQDKQSIFYSLLGAELKNKQFLTTPVQIGLLSGRTSNGLNFIN 95 (168)
Q Consensus 45 ~~T~ea~~~~~~~~~~~~~~g~~~~~~~~lt~a~l~~~L~~~~~~~vn~VN 95 (168)
|+|.+++.++...+++ +|..|++| +.+.|.||
T Consensus 102 ~~T~e~~~~~~~~~~~-----------------ni~~~l~g--~~~~n~VN 133 (133)
T PF00389_consen 102 GYTDEARERMAEIAAE-----------------NIERFLNG--EPPENVVN 133 (133)
T ss_dssp TGBHHHHHHHHHHHHH-----------------HHHHHHTT--ST-TTBSS
T ss_pred hhHHHHHHHHHHHHHH-----------------HHHHHHcC--CCCCCCCC
Confidence 6899999999999999 59999997 68899998
No 26
>PF15366 DUF4597: Domain of unknown function (DUF4597)
Probab=49.52 E-value=13 Score=24.52 Aligned_cols=15 Identities=27% Similarity=0.563 Sum_probs=12.6
Q ss_pred hhccCCceEEccCCC
Q psy6351 30 ELIKHPKVIVTPHLG 44 (168)
Q Consensus 30 pL~~~~nvilTPHig 44 (168)
.-++.||+|+||-.-
T Consensus 18 KhLdVPnIIiTPPTP 32 (62)
T PF15366_consen 18 KHLDVPNIIITPPTP 32 (62)
T ss_pred cccCCCceEecCCCC
Confidence 678899999999754
No 27
>PF06345 Drf_DAD: DRF Autoregulatory Domain; InterPro: IPR010465 This domain is found in Diaphanous-related formins (Drfs). It binds the N-terminal GTPase-binding domain; this link is broken when GTP-bound Rho binds to the GBD and activates the protein. The addition of diaphanous activating domains (DAD) to mammalian cells induces actin filament formation, stabilises microtubules, and activates serum-response mediated transcription [].; PDB: 3O4X_H 3OBV_E 2BAP_C 2F31_B.
Probab=31.35 E-value=18 Score=17.39 Aligned_cols=9 Identities=22% Similarity=0.457 Sum_probs=7.1
Q ss_pred CHHHHhcCC
Q psy6351 1 MKSELRCGH 9 (168)
Q Consensus 1 L~~AL~~G~ 9 (168)
|++||++|.
T Consensus 6 llealqtg~ 14 (15)
T PF06345_consen 6 LLEALQTGS 14 (15)
T ss_dssp HHHHHHHST
T ss_pred HHHHHHccC
Confidence 578999885
No 28
>COG5157 CDC73 RNA polymerase II assessory factor [Transcription]
Probab=26.41 E-value=47 Score=28.97 Aligned_cols=37 Identities=16% Similarity=0.151 Sum_probs=27.7
Q ss_pred cccchHHHHHhhccCCCCCCccccChhhHHhhCCceEEEEE
Q psy6351 71 KQFLTTPVQIGLLSGRTSNGLNFINVNTYASEGGLKVAYEH 111 (168)
Q Consensus 71 ~~~lt~a~l~~~L~~~~~~~vn~VNa~~la~~~GI~v~e~~ 111 (168)
..+||.+|||.||.. +..||..|++..+. ||.+.+.+
T Consensus 215 SS~lt~~NIK~FleE--gkyV~P~n~~~~~~--G~~i~~~e 251 (362)
T COG5157 215 SSPLTLSNIKEFLEE--GKYVNPRNLPSCSD--GIRISEVE 251 (362)
T ss_pred ccceeHHHHHHHHHh--cCccCccccccCCC--CceEEeee
Confidence 588999999999984 46778777777654 66665543
No 29
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=24.63 E-value=26 Score=25.10 Aligned_cols=24 Identities=17% Similarity=0.307 Sum_probs=20.1
Q ss_pred eccccccEEEEeecCCCCCccccc
Q psy6351 141 TELLSYSLILVLQEDTAQWSIPYL 164 (168)
Q Consensus 141 ~~~~eG~~li~r~~D~pg~~~~~~ 164 (168)
....||-+.|.-..+.|-.||||+
T Consensus 89 ~~~~eG~I~~~~~~~~~~lsIPy~ 112 (112)
T PF06280_consen 89 GPFYEGFITFKSSDGEPDLSIPYM 112 (112)
T ss_dssp -EEEEEEEEEESSTTSEEEEEEEE
T ss_pred CCEEEEEEEEEcCCCCEEEEeeeC
Confidence 345689999999999999999996
No 30
>PF01256 Carb_kinase: Carbohydrate kinase; InterPro: IPR000631 This family is related to Hydroxyethylthiazole kinase IPR000417 from INTERPRO and PfkB carbohydrate kinase IPR011611 from INTERPRO implying that it also a carbohydrate kinase. Several uncharacterised proteins have been shown to share regions of similarities, including yeast chromosome XI hypothetical protein YKL151c; Caenorhabditis elegans hypothetical protein R107.2; Escherichia coli hypothetical protein yjeF; Bacillus subtilis hypothetical protein yxkO; Helicobacter pylori hypothetical protein HP1363; Mycobacterium tuberculosis hypothetical protein MtCY77.05c; Mycobacterium leprae hypothetical protein B229_C2_201; Synechocystis sp. (strain PCC 6803) hypothetical protein sll1433; and Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1586. These are proteins of about 30 to 40 kDa whose central region is well conserved.; PDB: 3RSG_A 3RT9_A 3RRF_A 3RTB_A 3RRE_A 3RS9_A 3RSS_A 3RRB_A 3RTA_A 3RTD_A ....
Probab=23.67 E-value=27 Score=29.01 Aligned_cols=12 Identities=50% Similarity=0.922 Sum_probs=9.0
Q ss_pred cCCceEEccCCC
Q psy6351 33 KHPKVIVTPHLG 44 (168)
Q Consensus 33 ~~~nvilTPHig 44 (168)
...++|+|||.+
T Consensus 114 ~~~~~IlTPH~g 125 (242)
T PF01256_consen 114 RNAPVILTPHPG 125 (242)
T ss_dssp SSSCEEEE-BHH
T ss_pred CCCCEEECCCHH
Confidence 447899999987
No 31
>PF07509 DUF1523: Protein of unknown function (DUF1523); InterPro: IPR011088 This entry is represented by Bacteriophage phiNM3, A0EWY4 from SWISSPROT. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The members of this family are restricted to the Gammaproteobacteria and Epsilonproteobacteria, the function of these proteins is unknown.
Probab=23.56 E-value=1.4e+02 Score=24.00 Aligned_cols=20 Identities=25% Similarity=0.293 Sum_probs=16.3
Q ss_pred eccccccEEEEeecCCCCCcc
Q psy6351 141 TELLSYSLILVLQEDTAQWSI 161 (168)
Q Consensus 141 ~~~~eG~~li~r~~D~pg~~~ 161 (168)
.....|..|+|||+|. ||.-
T Consensus 71 t~~~~~~~mVyRNEDT-gwgw 90 (175)
T PF07509_consen 71 TVRDNGKVMVYRNEDT-GWGW 90 (175)
T ss_pred EEeCCCcEEEEEecCC-CcCC
Confidence 5569999999999997 5543
Done!