Your job contains 1 sequence.
>psy6351
MKSELRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIRQDKQSIF
YSLLGAELKNKQFLTTPVQIGLLSGRTSNGLNFINVNTYASEGGLKVAYEHDPSSSQNLV
ALAFGSNVAKHVLTVKQGLFTELLSYSLILVLQEDTAQWSIPYLRSPS
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy6351
(168 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
ZFIN|ZDB-GENE-030131-647 - symbol:phgdh "phosphoglycerate... 154 2.9e-16 2
UNIPROTKB|J9P9I6 - symbol:LOC607890 "Uncharacterized prot... 150 8.0e-15 2
UNIPROTKB|J9P120 - symbol:LOC607890 "Uncharacterized prot... 150 8.7e-15 2
UNIPROTKB|L7N0I9 - symbol:LOC607890 "Uncharacterized prot... 150 1.1e-14 2
UNIPROTKB|Q5SZU1 - symbol:PHGDH "D-3-phosphoglycerate deh... 142 1.0e-13 2
UNIPROTKB|O43175 - symbol:PHGDH "D-3-phosphoglycerate deh... 142 1.3e-13 2
MGI|MGI:1355330 - symbol:Phgdh "3-phosphoglycerate dehydr... 142 1.6e-13 2
RGD|61987 - symbol:Phgdh "phosphoglycerate dehydrogenase"... 142 2.1e-13 2
FB|FBgn0032350 - symbol:CG6287 species:7227 "Drosophila m... 162 1.7e-11 1
UNIPROTKB|E1C7Y3 - symbol:PHGDH "Uncharacterized protein"... 164 2.8e-11 1
TIGR_CMR|GSU_1198 - symbol:GSU_1198 "D-3-phosphoglycerate... 151 7.4e-10 1
WB|WBGene00007836 - symbol:C31C9.2 species:6239 "Caenorha... 141 3.3e-09 1
UNIPROTKB|A5GFY8 - symbol:PHGDH "D-3-phosphoglycerate deh... 144 4.1e-09 1
UNIPROTKB|Q5EAD2 - symbol:PHGDH "D-3-phosphoglycerate deh... 143 5.3e-09 1
TIGR_CMR|CHY_2698 - symbol:CHY_2698 "D-3-phosphoglycerate... 138 1.8e-08 1
UNIPROTKB|Q9KP92 - symbol:VC_2481 "D-3-phosphoglycerate d... 134 3.2e-08 1
TIGR_CMR|VC_2481 - symbol:VC_2481 "D-3-phosphoglycerate d... 134 3.2e-08 1
TAIR|locus:2124266 - symbol:EDA9 "embryo sac development ... 120 1.8e-06 2
DICTYBASE|DDB_G0281071 - symbol:serA "3-phosphoglycerate ... 121 2.4e-06 1
TIGR_CMR|SPO_3355 - symbol:SPO_3355 "D-3-phosphoglycerate... 121 3.7e-06 1
UNIPROTKB|P0A544 - symbol:serA "D-3-phosphoglycerate dehy... 111 5.6e-06 2
RGD|1592112 - symbol:LOC290415 "similar to 3-phosphoglyce... 97 8.7e-06 2
TIGR_CMR|DET_0599 - symbol:DET_0599 "D-3-phosphoglycerate... 106 2.9e-05 2
TAIR|locus:2090649 - symbol:AT3G19480 species:3702 "Arabi... 106 0.00032 2
>ZFIN|ZDB-GENE-030131-647 [details] [associations]
symbol:phgdh "phosphoglycerate dehydrogenase"
species:7955 "Danio rerio" [GO:0016616 "oxidoreductase activity,
acting on the CH-OH group of donors, NAD or NADP as acceptor"
evidence=IEA] [GO:0051287 "NAD binding" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0008152 "metabolic
process" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004617 "phosphoglycerate dehydrogenase activity"
evidence=IEA] [GO:0048037 "cofactor binding" evidence=IEA]
[GO:0006564 "L-serine biosynthetic process" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR006139
InterPro:IPR006140 InterPro:IPR006236 Pfam:PF00389 Pfam:PF02826
PROSITE:PS00065 InterPro:IPR016040 ZFIN:ZDB-GENE-030131-647
Gene3D:3.40.50.720 GO:GO:0051287 GeneTree:ENSGT00530000063021
GO:GO:0006564 GO:GO:0004617 PANTHER:PTHR10996:SF20
TIGRFAMs:TIGR01327 OMA:FGVEQLP EMBL:BX321905 IPI:IPI00510909
ProteinModelPortal:F1QEY8 Ensembl:ENSDART00000012938
ArrayExpress:F1QEY8 Bgee:F1QEY8 Uniprot:F1QEY8
Length = 528
Score = 154 (59.3 bits), Expect = 2.9e-16, Sum P(2) = 2.9e-16
Identities = 32/52 (61%), Positives = 34/52 (65%)
Query: 5 LRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIRQDK 56
L G CGGA LDVF EEPP+ L+ HP VI PHLGASTKEAQ R K
Sbjct: 249 LESGQCGGAGLDVFVEEPPRERA---LVNHPNVISCPHLGASTKEAQARCGK 297
Score = 80 (33.2 bits), Expect = 2.9e-16, Sum P(2) = 2.9e-16
Identities = 23/79 (29%), Positives = 38/79 (48%)
Query: 64 LGAELKNKQ-FLTTPVQIGLLSGRTSNGLNFINVNTYASEGGLKVAYEHDPSSSQNLVAL 122
LG LK FL++ +GLL+ NG N +N A E G+ V +H S + +
Sbjct: 361 LGEALKKSTGFLSSAAVVGLLTEAPHNGPNLVNALPLAKETGITVHTDHKASDEREACVM 420
Query: 123 AFGSNVAKH--VLTVKQGL 139
N +++ V +V+ G+
Sbjct: 421 EVSVNGSRYKAVGSVQAGV 439
>UNIPROTKB|J9P9I6 [details] [associations]
symbol:LOC607890 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0051287 "NAD binding" evidence=IEA]
[GO:0006564 "L-serine biosynthetic process" evidence=IEA]
[GO:0004617 "phosphoglycerate dehydrogenase activity" evidence=IEA]
InterPro:IPR006139 InterPro:IPR006140 InterPro:IPR006236
Pfam:PF00389 Pfam:PF02826 PROSITE:PS00065 PROSITE:PS00670
PROSITE:PS00671 InterPro:IPR016040 Gene3D:3.40.50.720 GO:GO:0051287
GeneTree:ENSGT00530000063021 GO:GO:0006564 GO:GO:0004617
PANTHER:PTHR10996:SF20 TIGRFAMs:TIGR01327 EMBL:AAEX03011027
Ensembl:ENSCAFT00000045717 Uniprot:J9P9I6
Length = 520
Score = 150 (57.9 bits), Expect = 8.0e-15, Sum P(2) = 8.0e-15
Identities = 31/49 (63%), Positives = 35/49 (71%)
Query: 5 LRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIR 53
LR G C GAALDVF EEPP+ L++H +VI PHLGASTKEAQ R
Sbjct: 249 LRSGQCAGAALDVFTEEPPRDRA---LVEHERVISCPHLGASTKEAQSR 294
Score = 70 (29.7 bits), Expect = 8.0e-15, Sum P(2) = 8.0e-15
Identities = 18/52 (34%), Positives = 24/52 (46%)
Query: 65 GAELKNKQFLTTP-VQIGLLSGRTSNG-LNFINVNTYASEGGLKVAYEHDPS 114
G LKN +P V +GLL S +N +N E GL V H+P+
Sbjct: 360 GTPLKNAGNCLSPAVIVGLLKDTASQADVNLVNAKLLVQEAGLSVTTSHNPA 411
>UNIPROTKB|J9P120 [details] [associations]
symbol:LOC607890 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0051287 "NAD binding" evidence=IEA]
[GO:0006564 "L-serine biosynthetic process" evidence=IEA]
[GO:0004617 "phosphoglycerate dehydrogenase activity" evidence=IEA]
InterPro:IPR006139 InterPro:IPR006140 InterPro:IPR006236
Pfam:PF00389 Pfam:PF02826 PROSITE:PS00065 PROSITE:PS00670
PROSITE:PS00671 InterPro:IPR016040 Gene3D:3.40.50.720 GO:GO:0051287
GeneTree:ENSGT00530000063021 GO:GO:0006564 KO:K00058 GO:GO:0004617
PANTHER:PTHR10996:SF20 TIGRFAMs:TIGR01327 EMBL:AAEX03011027
RefSeq:XP_003639659.1 RefSeq:XP_849835.1 RefSeq:XP_850035.1
Ensembl:ENSCAFT00000046785 Ensembl:ENSCAFT00000047474
GeneID:100856197 GeneID:607890 GeneID:608055 KEGG:cfa:100856197
KEGG:cfa:607890 KEGG:cfa:608055 Uniprot:J9P120
Length = 533
Score = 150 (57.9 bits), Expect = 8.7e-15, Sum P(2) = 8.7e-15
Identities = 31/49 (63%), Positives = 35/49 (71%)
Query: 5 LRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIR 53
LR G C GAALDVF EEPP+ L++H +VI PHLGASTKEAQ R
Sbjct: 249 LRSGQCAGAALDVFTEEPPRDRA---LVEHERVISCPHLGASTKEAQSR 294
Score = 70 (29.7 bits), Expect = 8.7e-15, Sum P(2) = 8.7e-15
Identities = 18/52 (34%), Positives = 24/52 (46%)
Query: 65 GAELKNKQFLTTP-VQIGLLSGRTSNG-LNFINVNTYASEGGLKVAYEHDPS 114
G LKN +P V +GLL S +N +N E GL V H+P+
Sbjct: 360 GTPLKNAGNCLSPAVIVGLLKDTASQADVNLVNAKLLVQEAGLSVTTSHNPA 411
>UNIPROTKB|L7N0I9 [details] [associations]
symbol:LOC607890 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0051287 "NAD binding" evidence=IEA]
[GO:0006564 "L-serine biosynthetic process" evidence=IEA]
[GO:0004617 "phosphoglycerate dehydrogenase activity" evidence=IEA]
GeneTree:ENSGT00530000063021 EMBL:AAEX03011031
Ensembl:ENSCAFT00000035279 Uniprot:L7N0I9
Length = 572
Score = 150 (57.9 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
Identities = 31/49 (63%), Positives = 35/49 (71%)
Query: 5 LRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIR 53
LR G C GAALDVF EEPP+ L++H +VI PHLGASTKEAQ R
Sbjct: 288 LRSGQCAGAALDVFTEEPPRDRA---LVEHERVISCPHLGASTKEAQSR 333
Score = 70 (29.7 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
Identities = 18/52 (34%), Positives = 24/52 (46%)
Query: 65 GAELKNKQFLTTP-VQIGLLSGRTSNG-LNFINVNTYASEGGLKVAYEHDPS 114
G LKN +P V +GLL S +N +N E GL V H+P+
Sbjct: 399 GTPLKNAGNCLSPAVIVGLLKDTASQADVNLVNAKLLVQEAGLSVTTSHNPA 450
>UNIPROTKB|Q5SZU1 [details] [associations]
symbol:PHGDH "D-3-phosphoglycerate dehydrogenase"
species:9606 "Homo sapiens" [GO:0004617 "phosphoglycerate
dehydrogenase activity" evidence=IEA] [GO:0006564 "L-serine
biosynthetic process" evidence=IEA] [GO:0051287 "NAD binding"
evidence=IEA] InterPro:IPR006139 InterPro:IPR006140
InterPro:IPR006236 Pfam:PF00389 Pfam:PF02826 PROSITE:PS00065
PROSITE:PS00670 PROSITE:PS00671 InterPro:IPR016040
Gene3D:3.40.50.720 GO:GO:0051287 GO:GO:0006564 EMBL:AL589734
GO:GO:0004617 HOVERGEN:HBG054241 PANTHER:PTHR10996:SF20
TIGRFAMs:TIGR01327 EMBL:AL139251 UniGene:Hs.487296 HGNC:HGNC:8923
ChiTaRS:PHGDH EMBL:AL109966 IPI:IPI00642548 SMR:Q5SZU1
STRING:Q5SZU1 REPRODUCTION-2DPAGE:IPI00642548
Ensembl:ENST00000369407 UCSC:uc001eib.3 Uniprot:Q5SZU1
Length = 499
Score = 142 (55.0 bits), Expect = 1.0e-13, Sum P(2) = 1.0e-13
Identities = 30/49 (61%), Positives = 33/49 (67%)
Query: 5 LRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIR 53
L+ G C GAALDVF EEPP+ L+ H VI PHLGASTKEAQ R
Sbjct: 215 LQSGQCAGAALDVFTEEPPRDRA---LVDHENVISCPHLGASTKEAQSR 260
Score = 67 (28.6 bits), Expect = 1.0e-13, Sum P(2) = 1.0e-13
Identities = 17/53 (32%), Positives = 24/53 (45%)
Query: 65 GAELKNKQFLTTP-VQIGLLSGRTSNG-LNFINVNTYASEGGLKVAYEHDPSS 115
G LKN +P V +GLL + +N +N E GL V H P++
Sbjct: 326 GTSLKNAGNCLSPAVIVGLLKEASKQADVNLVNAKLLVKEAGLNVTTSHSPAA 378
>UNIPROTKB|O43175 [details] [associations]
symbol:PHGDH "D-3-phosphoglycerate dehydrogenase"
species:9606 "Homo sapiens" [GO:0051287 "NAD binding" evidence=IEA]
[GO:0006541 "glutamine metabolic process" evidence=IEA] [GO:0006544
"glycine metabolic process" evidence=IEA] [GO:0006566 "threonine
metabolic process" evidence=IEA] [GO:0009448 "gamma-aminobutyric
acid metabolic process" evidence=IEA] [GO:0010468 "regulation of
gene expression" evidence=IEA] [GO:0019530 "taurine metabolic
process" evidence=IEA] [GO:0021510 "spinal cord development"
evidence=IEA] [GO:0021782 "glial cell development" evidence=IEA]
[GO:0021915 "neural tube development" evidence=IEA] [GO:0022402
"cell cycle process" evidence=IEA] [GO:0031175 "neuron projection
development" evidence=IEA] [GO:0009055 "electron carrier activity"
evidence=TAS] [GO:0007420 "brain development" evidence=TAS]
[GO:0004617 "phosphoglycerate dehydrogenase activity" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006564 "L-serine
biosynthetic process" evidence=TAS] [GO:0008652 "cellular amino
acid biosynthetic process" evidence=TAS] [GO:0034641 "cellular
nitrogen compound metabolic process" evidence=TAS] [GO:0044281
"small molecule metabolic process" evidence=TAS]
Reactome:REACT_111217 InterPro:IPR006139 InterPro:IPR006140
InterPro:IPR006236 Pfam:PF00389 Pfam:PF02826 PROSITE:PS00065
PROSITE:PS00670 PROSITE:PS00671 InterPro:IPR016040 EMBL:AF006043
GO:GO:0005829 GO:GO:0007420 DrugBank:DB00157 Gene3D:3.40.50.720
GO:GO:0051287 EMBL:CH471122 GO:GO:0009055 GO:GO:0034641
eggNOG:COG0111 GO:GO:0006564 EMBL:AL589734 KO:K00058
UniPathway:UPA00135 GO:GO:0004617 CTD:26227 HOGENOM:HOG000136693
HOVERGEN:HBG054241 OrthoDB:EOG4Q2DF9 PANTHER:PTHR10996:SF20
TIGRFAMs:TIGR01327 EMBL:AF171237 EMBL:CR456795 EMBL:AK315360
EMBL:AL139251 EMBL:BC000303 EMBL:BC001349 EMBL:BC011262
IPI:IPI00011200 RefSeq:NP_006614.2 UniGene:Hs.487296 PDB:2G76
PDBsum:2G76 ProteinModelPortal:O43175 SMR:O43175 IntAct:O43175
MINT:MINT-4999739 STRING:O43175 PhosphoSite:O43175 PaxDb:O43175
PeptideAtlas:O43175 PRIDE:O43175 DNASU:26227
Ensembl:ENST00000369409 GeneID:26227 KEGG:hsa:26227 UCSC:uc001ehz.3
GeneCards:GC01P120202 HGNC:HGNC:8923 HPA:CAB003681 HPA:HPA021241
HPA:HPA024031 MIM:601815 MIM:606879 neXtProt:NX_O43175
Orphanet:79351 PharmGKB:PA33264 InParanoid:O43175 OMA:TGVFDGY
PhylomeDB:O43175 ChiTaRS:PHGDH EvolutionaryTrace:O43175
GenomeRNAi:26227 NextBio:48383 ArrayExpress:O43175 Bgee:O43175
CleanEx:HS_PHGDH Genevestigator:O43175 GermOnline:ENSG00000092621
Uniprot:O43175
Length = 533
Score = 142 (55.0 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 30/49 (61%), Positives = 33/49 (67%)
Query: 5 LRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIR 53
L+ G C GAALDVF EEPP+ L+ H VI PHLGASTKEAQ R
Sbjct: 249 LQSGQCAGAALDVFTEEPPRDRA---LVDHENVISCPHLGASTKEAQSR 294
Score = 67 (28.6 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 17/53 (32%), Positives = 24/53 (45%)
Query: 65 GAELKNKQFLTTP-VQIGLLSGRTSNG-LNFINVNTYASEGGLKVAYEHDPSS 115
G LKN +P V +GLL + +N +N E GL V H P++
Sbjct: 360 GTSLKNAGNCLSPAVIVGLLKEASKQADVNLVNAKLLVKEAGLNVTTSHSPAA 412
>MGI|MGI:1355330 [details] [associations]
symbol:Phgdh "3-phosphoglycerate dehydrogenase"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004617 "phosphoglycerate dehydrogenase activity"
evidence=ISO;TAS] [GO:0006541 "glutamine metabolic process"
evidence=IMP] [GO:0006544 "glycine metabolic process" evidence=IMP]
[GO:0006563 "L-serine metabolic process" evidence=IMP] [GO:0006564
"L-serine biosynthetic process" evidence=IEA] [GO:0006566
"threonine metabolic process" evidence=IMP] [GO:0008152 "metabolic
process" evidence=IEA] [GO:0008652 "cellular amino acid
biosynthetic process" evidence=IEA] [GO:0009448 "gamma-aminobutyric
acid metabolic process" evidence=IMP] [GO:0010468 "regulation of
gene expression" evidence=IMP] [GO:0016491 "oxidoreductase
activity" evidence=IEA] [GO:0016616 "oxidoreductase activity,
acting on the CH-OH group of donors, NAD or NADP as acceptor"
evidence=IEA] [GO:0019530 "taurine metabolic process" evidence=IMP]
[GO:0021510 "spinal cord development" evidence=IMP] [GO:0021782
"glial cell development" evidence=IMP] [GO:0021915 "neural tube
development" evidence=IMP] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0022402 "cell cycle process" evidence=IMP] [GO:0031175 "neuron
projection development" evidence=IMP] [GO:0048037 "cofactor
binding" evidence=IEA] [GO:0051287 "NAD binding" evidence=IEA]
[GO:0055114 "oxidation-reduction process" evidence=ISO;TAS]
InterPro:IPR006139 InterPro:IPR006140 InterPro:IPR006236
Pfam:PF00389 Pfam:PF02826 PROSITE:PS00065 PROSITE:PS00670
PROSITE:PS00671 InterPro:IPR016040 MGI:MGI:1355330
Gene3D:3.40.50.720 GO:GO:0051287 GO:GO:0021510 GO:GO:0021915
GO:GO:0031175 GO:GO:0010468 GO:GO:0006541 GO:GO:0006544
GO:GO:0019530 GO:GO:0022402 eggNOG:COG0111
GeneTree:ENSGT00530000063021 GO:GO:0006564 GO:GO:0009448
GO:GO:0021782 GO:GO:0006563 GO:GO:0006566 KO:K00058
UniPathway:UPA00135 GO:GO:0004617 CTD:26227 HOGENOM:HOG000136693
HOVERGEN:HBG054241 OrthoDB:EOG4Q2DF9 PANTHER:PTHR10996:SF20
TIGRFAMs:TIGR01327 OMA:TGVFDGY EMBL:AB128936 EMBL:AK076815
EMBL:AK169684 EMBL:BC086668 EMBL:BC110673 EMBL:L21027
IPI:IPI00225961 RefSeq:NP_058662.2 UniGene:Mm.16898
UniGene:Mm.371997 ProteinModelPortal:Q61753 SMR:Q61753
IntAct:Q61753 STRING:Q61753 PhosphoSite:Q61753
COMPLUYEAST-2DPAGE:Q61753 REPRODUCTION-2DPAGE:IPI00225961
REPRODUCTION-2DPAGE:Q61753 SWISS-2DPAGE:Q61753 PaxDb:Q61753
PRIDE:Q61753 Ensembl:ENSMUST00000065793 GeneID:236539
KEGG:mmu:236539 UCSC:uc008qps.1 InParanoid:Q61753 NextBio:382995
Bgee:Q61753 CleanEx:MM_PHGDH Genevestigator:Q61753
GermOnline:ENSMUSG00000053398 Uniprot:Q61753
Length = 533
Score = 142 (55.0 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 30/49 (61%), Positives = 33/49 (67%)
Query: 5 LRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIR 53
L+ G C GAALDVF EEPP+ L+ H VI PHLGASTKEAQ R
Sbjct: 249 LQSGQCAGAALDVFTEEPPRDRA---LVDHENVISCPHLGASTKEAQSR 294
Score = 66 (28.3 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 17/51 (33%), Positives = 23/51 (45%)
Query: 65 GAELKNKQFLTTP-VQIGLLSGRTSNG-LNFINVNTYASEGGLKVAYEHDP 113
G LKN +P V +GLL + +N +N E GL V H+P
Sbjct: 360 GTSLKNAGTCLSPAVIVGLLREASKQADVNLVNAKLLVKEAGLNVTTSHNP 410
>RGD|61987 [details] [associations]
symbol:Phgdh "phosphoglycerate dehydrogenase" species:10116
"Rattus norvegicus" [GO:0004617 "phosphoglycerate dehydrogenase
activity" evidence=IDA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0006541 "glutamine metabolic process"
evidence=IEA;ISO] [GO:0006544 "glycine metabolic process"
evidence=IEA;ISO] [GO:0006563 "L-serine metabolic process"
evidence=ISO] [GO:0006564 "L-serine biosynthetic process"
evidence=IEA] [GO:0006566 "threonine metabolic process"
evidence=IEA;ISO] [GO:0009070 "serine family amino acid biosynthetic
process" evidence=TAS] [GO:0009448 "gamma-aminobutyric acid
metabolic process" evidence=IEA;ISO] [GO:0010468 "regulation of gene
expression" evidence=IEA;ISO] [GO:0019530 "taurine metabolic
process" evidence=IEA;ISO] [GO:0021510 "spinal cord development"
evidence=IEA;ISO] [GO:0021782 "glial cell development"
evidence=IEA;ISO] [GO:0021915 "neural tube development"
evidence=IEA;ISO] [GO:0022008 "neurogenesis" evidence=ISO]
[GO:0022402 "cell cycle process" evidence=IEA;ISO] [GO:0031175
"neuron projection development" evidence=IEA;ISO] [GO:0051287 "NAD
binding" evidence=IEA] InterPro:IPR006139 InterPro:IPR006140
InterPro:IPR006236 Pfam:PF00389 Pfam:PF02826 PROSITE:PS00065
PROSITE:PS00670 PROSITE:PS00671 InterPro:IPR016040 RGD:61987
Gene3D:3.40.50.720 GO:GO:0051287 GO:GO:0021510 GO:GO:0021915
GO:GO:0031175 GO:GO:0010468 GO:GO:0006541 GO:GO:0006544
GO:GO:0019530 GO:GO:0022402 eggNOG:COG0111
GeneTree:ENSGT00530000063021 GO:GO:0006564 GO:GO:0009448
GO:GO:0021782 GO:GO:0009070 GO:GO:0006566 KO:K00058
UniPathway:UPA00135 GO:GO:0004617 CTD:26227 HOGENOM:HOG000136693
HOVERGEN:HBG054241 OrthoDB:EOG4Q2DF9 PANTHER:PTHR10996:SF20
TIGRFAMs:TIGR01327 OMA:TGVFDGY EMBL:X97772 EMBL:AJ271975
EMBL:BC086327 IPI:IPI00475835 RefSeq:NP_113808.1 UniGene:Rn.6872
ProteinModelPortal:O08651 SMR:O08651 IntAct:O08651 STRING:O08651
PhosphoSite:O08651 World-2DPAGE:0004:O08651 PRIDE:O08651
Ensembl:ENSRNOT00000056173 GeneID:58835 KEGG:rno:58835
UCSC:RGD:61987 InParanoid:O08651 BioCyc:MetaCyc:MONOMER-10261
NextBio:611397 Genevestigator:O08651 GermOnline:ENSRNOG00000019328
Uniprot:O08651
Length = 533
Score = 142 (55.0 bits), Expect = 2.1e-13, Sum P(2) = 2.1e-13
Identities = 30/49 (61%), Positives = 33/49 (67%)
Query: 5 LRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIR 53
L+ G C GAALDVF EEPP+ L+ H VI PHLGASTKEAQ R
Sbjct: 249 LQSGQCAGAALDVFTEEPPRDRA---LVDHENVISCPHLGASTKEAQSR 294
Score = 65 (27.9 bits), Expect = 2.1e-13, Sum P(2) = 2.1e-13
Identities = 17/51 (33%), Positives = 22/51 (43%)
Query: 65 GAELKNKQFLTTP-VQIGLLSGRTSNG-LNFINVNTYASEGGLKVAYEHDP 113
G LKN +P V +GLL + +N +N E GL V H P
Sbjct: 360 GTSLKNAGTCLSPAVIVGLLREASKQADVNLVNAKLLVKEAGLNVTTSHSP 410
>FB|FBgn0032350 [details] [associations]
symbol:CG6287 species:7227 "Drosophila melanogaster"
[GO:0004617 "phosphoglycerate dehydrogenase activity" evidence=ISS]
[GO:0006564 "L-serine biosynthetic process" evidence=IEA]
[GO:0055114 "oxidation-reduction process" evidence=IEA] [GO:0051287
"NAD binding" evidence=IEA] InterPro:IPR006139 InterPro:IPR006140
InterPro:IPR006236 Pfam:PF00389 Pfam:PF02826 PROSITE:PS00065
InterPro:IPR016040 EMBL:AE014134 Gene3D:3.40.50.720 GO:GO:0051287
eggNOG:COG0111 GeneTree:ENSGT00530000063021 GO:GO:0006564 KO:K00058
GO:GO:0004617 PANTHER:PTHR10996:SF20 EMBL:AY058282 EMBL:DQ062768
RefSeq:NP_609496.1 UniGene:Dm.4327 HSSP:P08328 SMR:Q9VKI8
STRING:Q9VKI8 EnsemblMetazoa:FBtr0080222 GeneID:34554
KEGG:dme:Dmel_CG6287 UCSC:CG6287-RA FlyBase:FBgn0032350
InParanoid:Q9VKI8 OMA:CISRFIN OrthoDB:EOG495X75 GenomeRNAi:34554
NextBio:789039 Uniprot:Q9VKI8
Length = 332
Score = 162 (62.1 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 32/49 (65%), Positives = 35/49 (71%)
Query: 5 LRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIR 53
L G GAA DV+ EEPPKS T LI HPKV+ TPHLGAST EAQ+R
Sbjct: 249 LESGKVAGAAFDVYPEEPPKSAVTKALISHPKVVATPHLGASTSEAQVR 297
>UNIPROTKB|E1C7Y3 [details] [associations]
symbol:PHGDH "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0004617 "phosphoglycerate dehydrogenase activity"
evidence=IEA] [GO:0006564 "L-serine biosynthetic process"
evidence=IEA] [GO:0051287 "NAD binding" evidence=IEA] [GO:0006541
"glutamine metabolic process" evidence=IEA] [GO:0006544 "glycine
metabolic process" evidence=IEA] [GO:0006566 "threonine metabolic
process" evidence=IEA] [GO:0009448 "gamma-aminobutyric acid
metabolic process" evidence=IEA] [GO:0010468 "regulation of gene
expression" evidence=IEA] [GO:0019530 "taurine metabolic process"
evidence=IEA] [GO:0021510 "spinal cord development" evidence=IEA]
[GO:0021782 "glial cell development" evidence=IEA] [GO:0021915
"neural tube development" evidence=IEA] [GO:0022402 "cell cycle
process" evidence=IEA] [GO:0031175 "neuron projection development"
evidence=IEA] InterPro:IPR006139 InterPro:IPR006140
InterPro:IPR006236 Pfam:PF00389 Pfam:PF02826 PROSITE:PS00065
PROSITE:PS00670 InterPro:IPR016040 Gene3D:3.40.50.720 GO:GO:0051287
GeneTree:ENSGT00530000063021 GO:GO:0006564 GO:GO:0004617
PANTHER:PTHR10996:SF20 TIGRFAMs:TIGR01327 EMBL:AADN02033884
IPI:IPI00599090 ProteinModelPortal:E1C7Y3
Ensembl:ENSGALT00000004729 OMA:FGVEQLP NextBio:20826719
Uniprot:E1C7Y3
Length = 525
Score = 164 (62.8 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 33/53 (62%), Positives = 38/53 (71%)
Query: 5 LRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIRQDKQ 57
LR G CGGAALDVF +EPPK +L+ HP VI PHLGAST+EAQ R K+
Sbjct: 249 LRSGQCGGAALDVFTQEPPKDR---DLVDHPNVICCPHLGASTREAQSRCGKE 298
>TIGR_CMR|GSU_1198 [details] [associations]
symbol:GSU_1198 "D-3-phosphoglycerate dehydrogenase"
species:243231 "Geobacter sulfurreducens PCA" [GO:0004617
"phosphoglycerate dehydrogenase activity" evidence=ISS] [GO:0006564
"L-serine biosynthetic process" evidence=ISS] InterPro:IPR002912
InterPro:IPR006139 InterPro:IPR006140 InterPro:IPR006236
Pfam:PF00389 Pfam:PF01842 Pfam:PF02826 PROSITE:PS00065
PROSITE:PS00670 PROSITE:PS00671 InterPro:IPR016040
Gene3D:3.40.50.720 GO:GO:0051287 GO:GO:0016597 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0006564 KO:K00058 GO:GO:0004617
HOGENOM:HOG000136693 PANTHER:PTHR10996:SF20 TIGRFAMs:TIGR01327
ProtClustDB:PRK13581 OMA:RNIPQAT RefSeq:NP_952251.1
ProteinModelPortal:Q74DW7 GeneID:2688308 KEGG:gsu:GSU1198
PATRIC:22025166 BioCyc:GSUL243231:GH27-1199-MONOMER Uniprot:Q74DW7
Length = 542
Score = 151 (58.2 bits), Expect = 7.4e-10, P = 7.4e-10
Identities = 30/48 (62%), Positives = 36/48 (75%)
Query: 5 LRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQI 52
L G GAA+DVF EEPPKSE +LI H +V+VTPHLGA+T EAQ+
Sbjct: 244 LESGKVAGAAVDVFSEEPPKSEYLKKLIGHERVVVTPHLGANTFEAQV 291
>WB|WBGene00007836 [details] [associations]
symbol:C31C9.2 species:6239 "Caenorhabditis elegans"
[GO:0004616 "phosphogluconate dehydrogenase (decarboxylating)
activity" evidence=IEA] [GO:0006098 "pentose-phosphate shunt"
evidence=IEA] [GO:0055114 "oxidation-reduction process"
evidence=IEA] [GO:0008152 "metabolic process" evidence=IEA]
[GO:0016616 "oxidoreductase activity, acting on the CH-OH group of
donors, NAD or NADP as acceptor" evidence=IEA] [GO:0051287 "NAD
binding" evidence=IEA] [GO:0048037 "cofactor binding" evidence=IEA]
[GO:0004617 "phosphoglycerate dehydrogenase activity" evidence=IEA]
[GO:0006564 "L-serine biosynthetic process" evidence=IEA]
[GO:0004455 "ketol-acid reductoisomerase activity" evidence=IEA]
[GO:0008652 "cellular amino acid biosynthetic process"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] InterPro:IPR006139 InterPro:IPR006140
InterPro:IPR006236 Pfam:PF00389 Pfam:PF02826 PROSITE:PS00065
PROSITE:PS00671 InterPro:IPR016040 GO:GO:0009792 GO:GO:0040010
Gene3D:3.40.50.720 GO:GO:0051287 eggNOG:COG0111
GeneTree:ENSGT00530000063021 HSSP:Q13363 GO:GO:0006564
HOGENOM:HOG000136700 KO:K00058 GO:GO:0004617 PANTHER:PTHR10996:SF20
EMBL:Z83219 PIR:T19602 RefSeq:NP_496868.1 ProteinModelPortal:O17626
SMR:O17626 DIP:DIP-25752N IntAct:O17626 MINT:MINT-1049763
STRING:O17626 World-2DPAGE:0020:O17626 PaxDb:O17626
EnsemblMetazoa:C31C9.2.1 EnsemblMetazoa:C31C9.2.2 GeneID:175012
KEGG:cel:CELE_C31C9.2 UCSC:C31C9.2.1 CTD:175012 WormBase:C31C9.2
InParanoid:O17626 OMA:ADNIVQY NextBio:886408 Uniprot:O17626
Length = 322
Score = 141 (54.7 bits), Expect = 3.3e-09, P = 3.3e-09
Identities = 32/50 (64%), Positives = 35/50 (70%)
Query: 5 LRCGHCGGAALDVFCEEPPKSEQTF-ELIKHPKVIVTPHLGASTKEAQIR 53
L GH GAA DVF +EPP TF ELI HP VI TPHLGAST +AQ+R
Sbjct: 249 LNAGHAKGAAFDVFEQEPP----TFRELIDHPLVIATPHLGASTIDAQLR 294
>UNIPROTKB|A5GFY8 [details] [associations]
symbol:PHGDH "D-3-phosphoglycerate dehydrogenase"
species:9823 "Sus scrofa" [GO:0031175 "neuron projection
development" evidence=IEA] [GO:0022402 "cell cycle process"
evidence=IEA] [GO:0021915 "neural tube development" evidence=IEA]
[GO:0021782 "glial cell development" evidence=IEA] [GO:0021510
"spinal cord development" evidence=IEA] [GO:0019530 "taurine
metabolic process" evidence=IEA] [GO:0010468 "regulation of gene
expression" evidence=IEA] [GO:0009448 "gamma-aminobutyric acid
metabolic process" evidence=IEA] [GO:0006566 "threonine metabolic
process" evidence=IEA] [GO:0006544 "glycine metabolic process"
evidence=IEA] [GO:0006541 "glutamine metabolic process"
evidence=IEA] [GO:0004617 "phosphoglycerate dehydrogenase activity"
evidence=IEA] [GO:0006564 "L-serine biosynthetic process"
evidence=IEA] [GO:0051287 "NAD binding" evidence=IEA]
InterPro:IPR006139 InterPro:IPR006140 InterPro:IPR006236
Pfam:PF00389 Pfam:PF02826 PROSITE:PS00065 PROSITE:PS00670
PROSITE:PS00671 InterPro:IPR016040 Gene3D:3.40.50.720 GO:GO:0051287
eggNOG:COG0111 GeneTree:ENSGT00530000063021 GO:GO:0006564
EMBL:CR956647 KO:K00058 UniPathway:UPA00135 GO:GO:0004617 CTD:26227
HOGENOM:HOG000136693 HOVERGEN:HBG054241 OrthoDB:EOG4Q2DF9
PANTHER:PTHR10996:SF20 TIGRFAMs:TIGR01327 OMA:TGVFDGY
RefSeq:NP_001116634.1 UniGene:Ssc.21431 ProteinModelPortal:A5GFY8
SMR:A5GFY8 STRING:A5GFY8 Ensembl:ENSSSCT00000007358
GeneID:100144529 KEGG:ssc:100144529 Uniprot:A5GFY8
Length = 533
Score = 144 (55.7 bits), Expect = 4.1e-09, P = 4.1e-09
Identities = 30/49 (61%), Positives = 34/49 (69%)
Query: 5 LRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIR 53
L+ G C GAALDVF EEPP+ L+ H KVI PHLGAST+EAQ R
Sbjct: 249 LQSGQCAGAALDVFTEEPPRDRA---LVDHEKVISCPHLGASTREAQSR 294
>UNIPROTKB|Q5EAD2 [details] [associations]
symbol:PHGDH "D-3-phosphoglycerate dehydrogenase"
species:9913 "Bos taurus" [GO:0031175 "neuron projection
development" evidence=IEA] [GO:0022402 "cell cycle process"
evidence=IEA] [GO:0021915 "neural tube development" evidence=IEA]
[GO:0021782 "glial cell development" evidence=IEA] [GO:0021510
"spinal cord development" evidence=IEA] [GO:0019530 "taurine
metabolic process" evidence=IEA] [GO:0010468 "regulation of gene
expression" evidence=IEA] [GO:0009448 "gamma-aminobutyric acid
metabolic process" evidence=IEA] [GO:0006566 "threonine metabolic
process" evidence=IEA] [GO:0006544 "glycine metabolic process"
evidence=IEA] [GO:0006541 "glutamine metabolic process"
evidence=IEA] [GO:0004617 "phosphoglycerate dehydrogenase activity"
evidence=IEA] [GO:0006564 "L-serine biosynthetic process"
evidence=IEA] [GO:0051287 "NAD binding" evidence=IEA]
InterPro:IPR006139 InterPro:IPR006140 InterPro:IPR006236
Pfam:PF00389 Pfam:PF02826 PROSITE:PS00065 PROSITE:PS00670
PROSITE:PS00671 InterPro:IPR016040 Gene3D:3.40.50.720 GO:GO:0051287
eggNOG:COG0111 GeneTree:ENSGT00530000063021 GO:GO:0006564 KO:K00058
UniPathway:UPA00135 GO:GO:0004617 EMBL:BT020637 EMBL:BC105479
IPI:IPI00699717 RefSeq:NP_001030189.1 UniGene:Bt.53026
ProteinModelPortal:Q5EAD2 SMR:Q5EAD2 STRING:Q5EAD2 PRIDE:Q5EAD2
Ensembl:ENSBTAT00000008907 GeneID:505103 KEGG:bta:505103 CTD:26227
HOGENOM:HOG000136693 HOVERGEN:HBG054241 InParanoid:Q5EAD2
OrthoDB:EOG4Q2DF9 NextBio:20866985 PANTHER:PTHR10996:SF20
TIGRFAMs:TIGR01327 Uniprot:Q5EAD2
Length = 533
Score = 143 (55.4 bits), Expect = 5.3e-09, P = 5.3e-09
Identities = 30/49 (61%), Positives = 33/49 (67%)
Query: 5 LRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIR 53
L+ G C GAALDVF EEPP+ L+ H VI PHLGASTKEAQ R
Sbjct: 249 LQSGQCAGAALDVFTEEPPRDRA---LVNHENVISCPHLGASTKEAQSR 294
>TIGR_CMR|CHY_2698 [details] [associations]
symbol:CHY_2698 "D-3-phosphoglycerate dehydrogenase"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0004617 "phosphoglycerate dehydrogenase activity" evidence=ISS]
[GO:0006564 "L-serine biosynthetic process" evidence=ISS]
InterPro:IPR006139 InterPro:IPR006140 InterPro:IPR006236
Pfam:PF00389 Pfam:PF02826 PROSITE:PS00065 PROSITE:PS00671
InterPro:IPR016040 Gene3D:3.40.50.720 GO:GO:0051287 EMBL:CP000141
GenomeReviews:CP000141_GR eggNOG:COG0111 GO:GO:0006564 KO:K00058
GO:GO:0004617 HOGENOM:HOG000136693 PANTHER:PTHR10996:SF20
TIGRFAMs:TIGR01327 ProtClustDB:PRK13581 OMA:RNIPQAT
RefSeq:YP_361480.1 ProteinModelPortal:Q3A8Q4 STRING:Q3A8Q4
GeneID:3727297 KEGG:chy:CHY_2698 PATRIC:21278419
BioCyc:CHYD246194:GJCN-2696-MONOMER Uniprot:Q3A8Q4
Length = 525
Score = 138 (53.6 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 31/48 (64%), Positives = 33/48 (68%)
Query: 5 LRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQI 52
L+ G GAALDVF +EP FEL P VIVTPHLGASTKEAQI
Sbjct: 243 LKAGEIAGAALDVFSKEPLTESPLFEL---PNVIVTPHLGASTKEAQI 287
>UNIPROTKB|Q9KP92 [details] [associations]
symbol:VC_2481 "D-3-phosphoglycerate dehydrogenase"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0004617 "phosphoglycerate dehydrogenase activity" evidence=ISS]
[GO:0006564 "L-serine biosynthetic process" evidence=ISS]
InterPro:IPR002912 InterPro:IPR006139 InterPro:IPR006140
Pfam:PF00389 Pfam:PF01842 Pfam:PF02826 PROSITE:PS00065
PROSITE:PS00670 PROSITE:PS00671 InterPro:IPR016040
Gene3D:3.40.50.720 GO:GO:0051287 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0016597 GO:GO:0006564 KO:K00058
GO:GO:0004617 OMA:RGGWLKS ProtClustDB:PRK11790 HSSP:P08328
PIR:C82072 RefSeq:NP_232110.1 ProteinModelPortal:Q9KP92 SMR:Q9KP92
DNASU:2613023 GeneID:2613023 KEGG:vch:VC2481 PATRIC:20083979
Uniprot:Q9KP92
Length = 409
Score = 134 (52.2 bits), Expect = 3.2e-08, P = 3.2e-08
Identities = 43/122 (35%), Positives = 65/122 (53%)
Query: 5 LRCGHCGGAALDVFCEEPPKSEQTFE--LIKHPKVIVTPHLGASTKEAQ----IRQDKQS 58
L GH GAA+DVF EEP +++ FE L+K VI+TPH+G ST+EAQ I +
Sbjct: 253 LESGHIAGAAIDVFPEEPASNKEPFESPLMKFDNVILTPHVGGSTQEAQENIGIEVAGKL 312
Query: 59 IFYSLLGAELKNKQFLTTPVQIGLLSGRTSNGLNFIN---------VNTYASEGGLKVAY 109
YS G+ L + F P ++ L R+ + L I+ +NT +E G+ +A
Sbjct: 313 AKYSDNGSTLSSVNF---P-EVSLPEHRSCSRLLHIHANRPGILTQINTIFAEEGINIAA 368
Query: 110 EH 111
++
Sbjct: 369 QY 370
>TIGR_CMR|VC_2481 [details] [associations]
symbol:VC_2481 "D-3-phosphoglycerate dehydrogenase"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004617
"phosphoglycerate dehydrogenase activity" evidence=ISS] [GO:0006564
"L-serine biosynthetic process" evidence=ISS] InterPro:IPR002912
InterPro:IPR006139 InterPro:IPR006140 Pfam:PF00389 Pfam:PF01842
Pfam:PF02826 PROSITE:PS00065 PROSITE:PS00670 PROSITE:PS00671
InterPro:IPR016040 Gene3D:3.40.50.720 GO:GO:0051287 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0016597 GO:GO:0006564 KO:K00058
GO:GO:0004617 OMA:RGGWLKS ProtClustDB:PRK11790 HSSP:P08328
PIR:C82072 RefSeq:NP_232110.1 ProteinModelPortal:Q9KP92 SMR:Q9KP92
DNASU:2613023 GeneID:2613023 KEGG:vch:VC2481 PATRIC:20083979
Uniprot:Q9KP92
Length = 409
Score = 134 (52.2 bits), Expect = 3.2e-08, P = 3.2e-08
Identities = 43/122 (35%), Positives = 65/122 (53%)
Query: 5 LRCGHCGGAALDVFCEEPPKSEQTFE--LIKHPKVIVTPHLGASTKEAQ----IRQDKQS 58
L GH GAA+DVF EEP +++ FE L+K VI+TPH+G ST+EAQ I +
Sbjct: 253 LESGHIAGAAIDVFPEEPASNKEPFESPLMKFDNVILTPHVGGSTQEAQENIGIEVAGKL 312
Query: 59 IFYSLLGAELKNKQFLTTPVQIGLLSGRTSNGLNFIN---------VNTYASEGGLKVAY 109
YS G+ L + F P ++ L R+ + L I+ +NT +E G+ +A
Sbjct: 313 AKYSDNGSTLSSVNF---P-EVSLPEHRSCSRLLHIHANRPGILTQINTIFAEEGINIAA 368
Query: 110 EH 111
++
Sbjct: 369 QY 370
>TAIR|locus:2124266 [details] [associations]
symbol:EDA9 "embryo sac development arrest 9"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0004617 "phosphoglycerate dehydrogenase
activity" evidence=IEA] [GO:0006564 "L-serine biosynthetic process"
evidence=IEA] [GO:0008152 "metabolic process" evidence=IEA]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0016597 "amino acid
binding" evidence=IEA] [GO:0016616 "oxidoreductase activity, acting
on the CH-OH group of donors, NAD or NADP as acceptor"
evidence=IEA] [GO:0048037 "cofactor binding" evidence=IEA]
[GO:0051287 "NAD binding" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0009561 "megagametogenesis"
evidence=IMP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0016020
"membrane" evidence=IDA] [GO:0009570 "chloroplast stroma"
evidence=IDA] [GO:0005829 "cytosol" evidence=RCA] [GO:0009536
"plastid" evidence=IDA] InterPro:IPR002912 InterPro:IPR006139
InterPro:IPR006140 InterPro:IPR006236 Pfam:PF00389 Pfam:PF01842
Pfam:PF02826 PROSITE:PS00065 PROSITE:PS00670 PROSITE:PS00671
InterPro:IPR016040 GO:GO:0005739 GO:GO:0005524 GO:GO:0009570
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0016020
Gene3D:3.40.50.720 GO:GO:0051287 GO:GO:0016597 GO:GO:0009561
EMBL:AL021961 EMBL:AL161585 eggNOG:COG0111 GO:GO:0006564 KO:K00058
GO:GO:0004617 HOGENOM:HOG000136693 PANTHER:PTHR10996:SF20
TIGRFAMs:TIGR01327 OMA:TGVFDGY HSSP:P08328 EMBL:AY063810
EMBL:AY150462 IPI:IPI00530988 PIR:T05416 RefSeq:NP_195146.1
UniGene:At.21335 UniGene:At.74573 ProteinModelPortal:O49485
SMR:O49485 IntAct:O49485 STRING:O49485 PaxDb:O49485 PRIDE:O49485
ProMEX:O49485 EnsemblPlants:AT4G34200.1 GeneID:829568
KEGG:ath:AT4G34200 TAIR:At4g34200 InParanoid:O49485
PhylomeDB:O49485 ProtClustDB:CLSN2685732 Genevestigator:O49485
Uniprot:O49485
Length = 603
Score = 120 (47.3 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 26/47 (55%), Positives = 32/47 (68%)
Query: 5 LRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQ 51
L G AALDVF +EPP + +L++H +V VTPHLGAST EAQ
Sbjct: 304 LDAGIVAQAALDVFTKEPPAKDS--KLVQHERVTVTPHLGASTMEAQ 348
Score = 35 (17.4 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 8/39 (20%), Positives = 20/39 (51%)
Query: 72 QFLTTPVQIGLLSGRTSNGLNFINVNTYASEGGLKVAYE 110
+ L + G++ + +N +N + A + GL+++ E
Sbjct: 428 RLLRAMITKGIIEPISDVYVNLVNADFTAKQRGLRLSEE 466
>DICTYBASE|DDB_G0281071 [details] [associations]
symbol:serA "3-phosphoglycerate dehydrogenase"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0055114 "oxidation-reduction process"
evidence=IEA] [GO:0051287 "NAD binding" evidence=IEA] [GO:0048037
"cofactor binding" evidence=IEA] [GO:0016616 "oxidoreductase
activity, acting on the CH-OH group of donors, NAD or NADP as
acceptor" evidence=IEA] [GO:0008152 "metabolic process"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0004617 "phosphoglycerate dehydrogenase activity"
evidence=IEA;ISS] [GO:0009070 "serine family amino acid
biosynthetic process" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0016491 "oxidoreductase activity" evidence=IEA]
[GO:0008652 "cellular amino acid biosynthetic process"
evidence=IEA] [GO:0006564 "L-serine biosynthetic process"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR006139 InterPro:IPR006140 Pfam:PF00389 Pfam:PF02826
PROSITE:PS00065 PROSITE:PS00670 PROSITE:PS00671 InterPro:IPR016040
dictyBase:DDB_G0281071 GO:GO:0045335 Gene3D:3.40.50.720
GO:GO:0051287 GenomeReviews:CM000152_GR EMBL:AAFI02000040
eggNOG:COG0111 HSSP:P0A9T0 GO:GO:0006564 GO:GO:0009070 KO:K00058
UniPathway:UPA00135 GO:GO:0004617 RefSeq:XP_640798.1
ProteinModelPortal:Q54UH8 STRING:Q54UH8 PRIDE:Q54UH8
EnsemblProtists:DDB0230052 GeneID:8622851 KEGG:ddi:DDB_G0281071
OMA:RGGWLKS ProtClustDB:CLSZ2430561 Uniprot:Q54UH8
Length = 407
Score = 121 (47.7 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 26/53 (49%), Positives = 36/53 (67%)
Query: 1 MKSELRCGHCGGAALDVFCEEPPKSEQTFE--LIKHPKVIVTPHLGASTKEAQ 51
+ + LR GH GAA+DV+ EEP + + +E L K P I+TPH+G ST+EAQ
Sbjct: 249 LANALRSGHLAGAAVDVYPEEPSANCKDWECELQKCPNTILTPHIGGSTEEAQ 301
>TIGR_CMR|SPO_3355 [details] [associations]
symbol:SPO_3355 "D-3-phosphoglycerate dehydrogenase"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0004617
"phosphoglycerate dehydrogenase activity" evidence=ISS] [GO:0006564
"L-serine biosynthetic process" evidence=ISS] InterPro:IPR006139
InterPro:IPR006140 InterPro:IPR006236 Pfam:PF00389 Pfam:PF02826
PROSITE:PS00065 PROSITE:PS00670 PROSITE:PS00671 InterPro:IPR016040
Gene3D:3.40.50.720 GO:GO:0051287 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0006564 KO:K00058 GO:GO:0004617
HOGENOM:HOG000136693 TIGRFAMs:TIGR01327 OMA:TGVFDGY
ProtClustDB:PRK13581 RefSeq:YP_168551.1 ProteinModelPortal:Q5LN57
GeneID:3194715 KEGG:sil:SPO3355 PATRIC:23380163 Uniprot:Q5LN57
Length = 531
Score = 121 (47.7 bits), Expect = 3.7e-06, P = 3.7e-06
Identities = 31/66 (46%), Positives = 37/66 (56%)
Query: 5 LRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQ----IRQDKQSIF 60
L+ GH GAA DVF EP K F L P V+ TPHLGA+T EAQ ++ +Q
Sbjct: 247 LQSGHVAGAAFDVFSVEPAKENPLFGL---PNVVCTPHLGAATTEAQENVALQVAEQMSN 303
Query: 61 YSLLGA 66
Y L GA
Sbjct: 304 YLLTGA 309
>UNIPROTKB|P0A544 [details] [associations]
symbol:serA "D-3-phosphoglycerate dehydrogenase"
species:1773 "Mycobacterium tuberculosis" [GO:0004617
"phosphoglycerate dehydrogenase activity" evidence=IDA] [GO:0005618
"cell wall" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0006564 "L-serine biosynthetic process"
evidence=IDA] [GO:0040007 "growth" evidence=IMP] [GO:0051289
"protein homotetramerization" evidence=IPI] InterPro:IPR002912
InterPro:IPR006139 InterPro:IPR006140 InterPro:IPR006236
Pfam:PF00389 Pfam:PF01842 Pfam:PF02826 PROSITE:PS00065
PROSITE:PS00670 PROSITE:PS00671 InterPro:IPR016040 GO:GO:0005886
GO:GO:0040007 GO:GO:0005618 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR Gene3D:3.40.50.720 GO:GO:0051287
GO:GO:0016597 GO:GO:0051289 EMBL:BX842581 eggNOG:COG0111
GO:GO:0006564 KO:K00058 UniPathway:UPA00135 GO:GO:0004617
HOGENOM:HOG000136693 TIGRFAMs:TIGR01327 PIR:G70854
RefSeq:NP_337589.1 RefSeq:YP_006516452.1 RefSeq:YP_177916.1
PDB:1YGY PDB:3DC2 PDB:3DDN PDBsum:1YGY PDBsum:3DC2 PDBsum:3DDN
ProteinModelPortal:P0A544 SMR:P0A544 PhosSite:P12071730
PRIDE:P0A544 EnsemblBacteria:EBMYCT00000000541
EnsemblBacteria:EBMYCT00000069692 GeneID:13317795 GeneID:887154
GeneID:925199 KEGG:mtc:MT3074 KEGG:mtu:Rv2996c KEGG:mtv:RVBD_2996c
PATRIC:18128526 TubercuList:Rv2996c OMA:YGVPHLT
ProtClustDB:PRK13581 EvolutionaryTrace:P0A544 Uniprot:P0A544
Length = 528
Score = 111 (44.1 bits), Expect = 5.6e-06, Sum P(2) = 5.6e-06
Identities = 26/46 (56%), Positives = 28/46 (60%)
Query: 8 GHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIR 53
GH A LDVF EP FEL + V+VTPHLGAST EAQ R
Sbjct: 248 GHVRAAGLDVFATEPCTDSPLFELAQ---VVVTPHLGASTAEAQDR 290
Score = 48 (22.0 bits), Expect = 5.6e-06, Sum P(2) = 5.6e-06
Identities = 17/74 (22%), Positives = 38/74 (51%)
Query: 81 GLLSGRTSNGLNFINVNTYASEGGL--KVAYEHDPSSSQNLVAL-AFGSNVAKHVLTVKQ 137
GL S + + F+N A+E G+ ++ + + +++V + A G++ + V+TV
Sbjct: 371 GLFSAVIEDAVTFVNAPALAAERGVTAEICKASESPNHRSVVDVRAVGADGS--VVTVSG 428
Query: 138 GLFTELLSYSLILV 151
L+ LS ++ +
Sbjct: 429 TLYGPQLSQKIVQI 442
>RGD|1592112 [details] [associations]
symbol:LOC290415 "similar to 3-phosphoglycerate dehydrogenase"
species:10116 "Rattus norvegicus" [GO:0004617 "phosphoglycerate
dehydrogenase activity" evidence=IEA] [GO:0006564 "L-serine
biosynthetic process" evidence=IEA] [GO:0051287 "NAD binding"
evidence=IEA] InterPro:IPR006139 InterPro:IPR006140
InterPro:IPR006236 Pfam:PF00389 Pfam:PF02826 PROSITE:PS00670
PROSITE:PS00671 InterPro:IPR016040 RGD:1592112 Gene3D:3.40.50.720
GO:GO:0051287 GeneTree:ENSGT00530000063021 GO:GO:0006564
GO:GO:0004617 OrthoDB:EOG4Q2DF9 PANTHER:PTHR10996:SF20
IPI:IPI00782457 ProteinModelPortal:D4A4D4
Ensembl:ENSRNOT00000057935 Uniprot:D4A4D4
Length = 455
Score = 97 (39.2 bits), Expect = 8.7e-06, Sum P(2) = 8.7e-06
Identities = 25/49 (51%), Positives = 31/49 (63%)
Query: 5 LRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIR 53
L+ G C GAALDVF +E + Q L+ H +I + LGASTKEAQ R
Sbjct: 248 LQSGRCAGAALDVFTDE---TLQDRALVDHENIISS--LGASTKEAQSR 291
Score = 65 (27.9 bits), Expect = 8.7e-06, Sum P(2) = 8.7e-06
Identities = 16/51 (31%), Positives = 23/51 (45%)
Query: 65 GAELKNK-QFLTTPVQIGLLSGRTSNG-LNFINVNTYASEGGLKVAYEHDP 113
G LKN L++ + +GLL + +N +N E GL V H P
Sbjct: 356 GKSLKNTGTCLSSAILVGLLRDASKQADMNLVNAKQLVKEAGLNVTNSHGP 406
>TIGR_CMR|DET_0599 [details] [associations]
symbol:DET_0599 "D-3-phosphoglycerate dehydrogenase"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0004617
"phosphoglycerate dehydrogenase activity" evidence=ISS] [GO:0006564
"L-serine biosynthetic process" evidence=ISS] InterPro:IPR006139
InterPro:IPR006140 InterPro:IPR006236 Pfam:PF00389 Pfam:PF02826
PROSITE:PS00065 PROSITE:PS00670 PROSITE:PS00671 InterPro:IPR016040
Gene3D:3.40.50.720 GO:GO:0051287 EMBL:CP000027
GenomeReviews:CP000027_GR eggNOG:COG0111 GO:GO:0006564 KO:K00058
GO:GO:0004617 HOGENOM:HOG000136693 PANTHER:PTHR10996:SF20
TIGRFAMs:TIGR01327 OMA:TGVFDGY ProtClustDB:PRK13581
RefSeq:YP_181341.1 ProteinModelPortal:Q3Z8V8 STRING:Q3Z8V8
GeneID:3230064 KEGG:det:DET0599 PATRIC:21608269
BioCyc:DETH243164:GJNF-600-MONOMER Uniprot:Q3Z8V8
Length = 526
Score = 106 (42.4 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 25/51 (49%), Positives = 31/51 (60%)
Query: 1 MKSELRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQ 51
+ + +R GGAA+DVF +EP FE +IVTPHLGAST EAQ
Sbjct: 239 LAAAIREKRIGGAAIDVFSKEPCTESCLFEC---DNIIVTPHLGASTAEAQ 286
Score = 49 (22.3 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 81 GLLSGRTSNGLNFINVNTYASEGGLKVAYEHDPSSSQNLVAL 122
G+L + +N +N + A++ GL V E S+ QN +L
Sbjct: 371 GILEHISEERVNVVNADIVAAQRGLGVT-EQKESACQNFSSL 411
>TAIR|locus:2090649 [details] [associations]
symbol:AT3G19480 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0004617
"phosphoglycerate dehydrogenase activity" evidence=IEA] [GO:0006564
"L-serine biosynthetic process" evidence=IEA] [GO:0008152
"metabolic process" evidence=IEA] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0016597 "amino acid binding" evidence=IEA]
[GO:0016616 "oxidoreductase activity, acting on the CH-OH group of
donors, NAD or NADP as acceptor" evidence=IEA] [GO:0048037
"cofactor binding" evidence=IEA] [GO:0051287 "NAD binding"
evidence=IEA] [GO:0055114 "oxidation-reduction process"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] InterPro:IPR002912
InterPro:IPR006139 InterPro:IPR006140 InterPro:IPR006236
Pfam:PF00389 Pfam:PF01842 Pfam:PF02826 PROSITE:PS00065
PROSITE:PS00670 PROSITE:PS00671 InterPro:IPR016040 GO:GO:0005739
GO:GO:0009570 EMBL:CP002686 Gene3D:3.40.50.720 GO:GO:0051287
GO:GO:0016597 EMBL:AB025624 GO:GO:0006564 KO:K00058 GO:GO:0004617
HOGENOM:HOG000136693 PANTHER:PTHR10996:SF20 TIGRFAMs:TIGR01327
HSSP:P08328 ProtClustDB:CLSN2685732 UniGene:At.46279
UniGene:At.68436 IPI:IPI00541171 RefSeq:NP_566637.2
ProteinModelPortal:Q9LT69 SMR:Q9LT69 STRING:Q9LT69 PRIDE:Q9LT69
ProMEX:Q9LT69 EnsemblPlants:AT3G19480.1 GeneID:821482
KEGG:ath:AT3G19480 TAIR:At3g19480 InParanoid:Q9LT69 OMA:RNIPQAT
PhylomeDB:Q9LT69 Genevestigator:Q9LT69 Uniprot:Q9LT69
Length = 588
Score = 106 (42.4 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 25/47 (53%), Positives = 28/47 (59%)
Query: 5 LRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQ 51
L G AALDVF EPP + +L+ H V TPHLGAST EAQ
Sbjct: 289 LDSGIVAQAALDVFTVEPPVKDN--KLVLHESVTATPHLGASTMEAQ 333
Score = 40 (19.1 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 8/30 (26%), Positives = 18/30 (60%)
Query: 81 GLLSGRTSNGLNFINVNTYASEGGLKVAYE 110
G++ +S +N +N + A + G+K++ E
Sbjct: 422 GIIEPISSVFINLVNSDYIAKQRGVKISEE 451
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.132 0.379 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 168 168 0.00079 108 3 11 22 0.42 32
31 0.46 34
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 24
No. of states in DFA: 592 (63 KB)
Total size of DFA: 146 KB (2089 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 15.98u 0.07s 16.05t Elapsed: 00:00:03
Total cpu time: 15.98u 0.07s 16.05t Elapsed: 00:00:03
Start: Thu Aug 15 15:38:15 2013 End: Thu Aug 15 15:38:18 2013