RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6351
(168 letters)
>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}
Length = 313
Score = 93.8 bits (234), Expect = 8e-24
Identities = 27/49 (55%), Positives = 32/49 (65%)
Query: 5 LRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIR 53
++ G A DVF EPPK E EL+KH +VIVT H+GA TKEAQ R
Sbjct: 246 IKKGKVYAYATDVFWNEPPKEEWELELLKHERVIVTTHIGAQTKEAQKR 294
>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase,
phosphoglycerate dehydrogenase deficiency, S metabolism,
2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo
sapiens}
Length = 335
Score = 88.8 bits (221), Expect = 8e-22
Identities = 30/49 (61%), Positives = 33/49 (67%), Gaps = 3/49 (6%)
Query: 5 LRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIR 53
L+ G C GAALDVF EEPP+ L+ H VI PHLGASTKEAQ R
Sbjct: 269 LQSGQCAGAALDVFTEEPPRDR---ALVDHENVISCPHLGASTKEAQSR 314
>1wwk_A Phosphoglycerate dehydrogenase; riken structural
genomics/proteomics initiative, RSGI, structural
genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus
horikoshii}
Length = 307
Score = 86.4 bits (215), Expect = 4e-21
Identities = 25/49 (51%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 5 LRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIR 53
L+ G GA LDVF EEP + L K V++TPH+GAST EAQ R
Sbjct: 246 LKEGWIAGAGLDVFEEEPLPKDH--PLTKFDNVVLTPHIGASTVEAQER 292
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle
structural genomics center for infect disease,
brucellosis; 2.15A {Brucella melitensis biovar abortus}
Length = 416
Score = 85.7 bits (213), Expect = 2e-20
Identities = 25/51 (49%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Query: 5 LRCGHCGGAALDVFCEEPPKSEQTFE--LIKHPKVIVTPHLGASTKEAQIR 53
L+ GH GAA+DVF EP + + F L VI+TPH+G ST+EAQ R
Sbjct: 258 LQEGHLAGAAIDVFPVEPASNGERFSTPLQGLENVILTPHIGGSTEEAQER 308
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation
phosphoglycerate dehydrogenase PGDH, oxidoreductase;
HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4
c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A*
2pa3_A* 2p9g_A*
Length = 404
Score = 85.0 bits (211), Expect = 4e-20
Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 5 LRCGHCGGAALDVFCEEPPKSEQTFE--LIKHPKVIVTPHLGASTKEAQIR 53
L H GAA+DVF EP + F L + V++TPH+G ST+EAQ
Sbjct: 247 LASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQEAQEN 297
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine
biosy structural genomics, PSI, protein structure
initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis}
SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A*
3ddn_A*
Length = 529
Score = 84.7 bits (210), Expect = 6e-20
Identities = 24/49 (48%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 5 LRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIR 53
+ GH A LDVF EP L + +V+VTPHLGAST EAQ R
Sbjct: 246 ITGGHVRAAGLDVFATEPCTDS---PLFELAQVVVTPHLGASTAEAQDR 291
Score = 36.9 bits (86), Expect = 0.002
Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 2/56 (3%)
Query: 69 KNKQFLTTPVQIGLLSGRTSNGLNFINVNTYASEGGLKVAYEHDPSSS--QNLVAL 122
+ + L GL S + + F+N A+E G+ S +++V +
Sbjct: 360 EEVEVLRLSALRGLFSAVIEDAVTFVNAPALAAERGVTAEICKASESPNHRSVVDV 415
>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein,
phosphorylation, transcriptional corepresso
transcription repressor; HET: NAD; 1.95A {Homo sapiens}
SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A*
3ga0_A 2ome_A*
Length = 347
Score = 81.9 bits (203), Expect = 3e-19
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 5 LRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIR 53
L+ G GAALDV EP Q L P +I TPH +++A I
Sbjct: 273 LKEGRIRGAALDVHESEPFSFSQG-PLKDAPNLICTPHAAWYSEQASIE 320
>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD,
oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana}
PDB: 3n7u_A* 3naq_A
Length = 351
Score = 79.2 bits (196), Expect = 3e-18
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 5 LRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIR 53
+ GH GG + DV+ +P + P +TPH +T +AQ+R
Sbjct: 270 VESGHIGGYSGDVWDPQPAPKDH--PWRYMPNQAMTPHTSGTTIDAQLR 316
>2nac_A NAD-dependent formate dehydrogenase;
oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas
SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A*
2gsd_A* 3fn4_A
Length = 393
Score = 78.1 bits (193), Expect = 1e-17
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 5 LRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIR 53
L G G A DV+ +P + P +TPH+ +T AQ R
Sbjct: 297 LESGRLAGYAGDVWFPQPAPKDH--PWRTMPYNGMTPHISGTTLTAQAR 343
>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD,
tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A
{Pseudomonas aeruginosa}
Length = 380
Score = 74.6 bits (184), Expect = 2e-16
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 4/49 (8%)
Query: 5 LRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIR 53
L G ALDV+ EP + +I TPH+ + E ++R
Sbjct: 221 LEGGADLEVALDVWEGEPQADP----ELAARCLIATPHIAGYSLEGKLR 265
>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J,
structural genomics, protein structure initiative; 2.20A
{Thermoplasma acidophilum}
Length = 290
Score = 73.8 bits (182), Expect = 2e-16
Identities = 10/49 (20%), Positives = 17/49 (34%), Gaps = 5/49 (10%)
Query: 5 LRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIR 53
L+ DV+ EP +E L I++PH+ +
Sbjct: 223 LKERSDVWYLSDVWWNEPEITE--TNL---RNAILSPHVAGGMSGEIMD 266
>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural
genomics, PSI-2, P structure initiative; 1.90A
{Ralstonia solanacearum}
Length = 352
Score = 74.2 bits (183), Expect = 2e-16
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 5 LRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIR 53
L G G AA+DVF EP Q L++ I TPH+G +E+
Sbjct: 265 LNRGRPGMAAIDVFETEPIL--QGHTLLRMENCICTPHIGYVERESYEM 311
>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid
dehydrogenase, cofactor regenerator, yeast, CBFDH; HET:
PG4; 1.55A {Candida boidinii} PDB: 2fss_A
Length = 364
Score = 72.7 bits (179), Expect = 6e-16
Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 3/52 (5%)
Query: 5 LRCGHCGGAALDVFCEEPPKSEQ---TFELIKHPKVIVTPHLGASTKEAQIR 53
L G G DV+ +P + +TPH +T +AQ R
Sbjct: 271 LESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGNAMTPHYSGTTLDAQTR 322
>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project
protein structural and functional analyses; 1.95A
{Pyrococcus horikoshii}
Length = 333
Score = 72.6 bits (179), Expect = 7e-16
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 5 LRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIR 53
++ G G A DVF +EP + + F+ + ++TPH EAQ
Sbjct: 249 IKQGKLKGYATDVFEKEPVREHELFKY--EWETVLTPHYAGLALEAQED 295
>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center
for structural genomics of infec diseases, csgid; HET:
NAD; 2.36A {Salmonella enterica subsp}
Length = 381
Score = 71.5 bits (176), Expect = 2e-15
Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 4/49 (8%)
Query: 5 LRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIR 53
L G LDV+ EP + L++ I T H+ T E + R
Sbjct: 224 LNAGQPLSVVLDVWEGEPDLNV---ALLEAVD-IGTSHIAGYTLEGKAR 268
>2pi1_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, 3D-structure,
structural genomics, NPPSFA; HET: MSE NAD; 2.12A
{Aquifex aeolicus VF5} PDB: 3kb6_A*
Length = 334
Score = 64.2 bits (157), Expect = 6e-13
Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 13/62 (20%)
Query: 5 LRCGHCGGAALDVFCEEPP-------------KSEQTFELIKHPKVIVTPHLGASTKEAQ 51
+ G G LDVF +E K+ + EL VI+TPH+ T ++
Sbjct: 244 YQRGKFSGLGLDVFEDEEILILKKYTEGKATDKNLKILELACKDNVIITPHIAYYTDKSL 303
Query: 52 IR 53
R
Sbjct: 304 ER 305
>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate
dehydrogenase, D-lactate dehydrogenas oxidoreductase;
HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4
c.23.12.1
Length = 333
Score = 63.0 bits (154), Expect = 1e-12
Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 11/58 (18%)
Query: 5 LRCGHCGGAALDVFCEEPP-----KSEQTFE------LIKHPKVIVTPHLGASTKEAQ 51
L+ G G +D + E +F+ L+ P V+++PH+ T+ A
Sbjct: 247 LKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIAYYTETAV 304
>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid
dehydrogenase, oxidoreductase; HET: NAD; 1.70A
{Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A*
4e5m_A*
Length = 330
Score = 62.2 bits (152), Expect = 3e-12
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
Query: 5 LRCGHCGGAALDVFCEEPPKSEQTF-----ELIKHPKVIVTPHLGASTKEAQIR 53
L G GG A DVF E L+ HP + TPH+G++ + ++
Sbjct: 250 LERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRAVRLE 303
>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase,
oxidoreductase; 1.85A {Rhodotorula graminis} PDB:
2w2l_A* 2w2l_D* 2w2k_B
Length = 348
Score = 61.9 bits (151), Expect = 4e-12
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 5 LRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIR 53
L+ G A LDV EP S+ ELI+ V +T H+G E
Sbjct: 270 LKSGKLLSAGLDVHEFEPQVSK---ELIEMKHVTLTTHIGGVAIETFHE 315
>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum
aerophilum} SCOP: c.2.1.4 c.23.12.1
Length = 303
Score = 61.5 bits (150), Expect = 4e-12
Identities = 9/51 (17%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Query: 5 LRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIRQD 55
L+ A DV+ ++ E P V+ TP + ++ +
Sbjct: 224 LKERPQFIFASDVWWGRNDFAKDA-EFFSLPNVVATPWVAGGYGNERVWRQ 273
>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase,
reversible interconversion of pyruvate INTO D-lactate;
1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4
c.23.12.1 PDB: 1j49_A* 2dld_A*
Length = 333
Score = 61.5 bits (150), Expect = 6e-12
Identities = 17/60 (28%), Positives = 22/60 (36%), Gaps = 11/60 (18%)
Query: 5 LRCGHCGGAALDVFCEEPP-----KSEQTF------ELIKHPKVIVTPHLGASTKEAQIR 53
L G G A+DV+ E + F +LI P V+VTP T A
Sbjct: 249 LDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADLIARPNVLVTPKTAFYTTHAVRN 308
>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST
genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus
horikoshii} PDB: 2dbr_A* 2dbz_A*
Length = 334
Score = 61.1 bits (149), Expect = 7e-12
Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 5 LRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIR 53
L+ G GA LDVF EEP +E EL K V++TPH+G+++ A+
Sbjct: 254 LKEGWIAGAGLDVFEEEPYYNE---ELFKLDNVVLTPHIGSASFGAREG 299
>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A));
2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4
c.23.12.1
Length = 320
Score = 60.6 bits (148), Expect = 1e-11
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 3/49 (6%)
Query: 5 LRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIR 53
L G A DVF EP +E P + PH+G++ +A+
Sbjct: 252 LEAGRLAYAGFDVFAGEPNINE---GYYDLPNTFLFPHIGSAATQARED 297
>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural
variant of the BAB rossmann fold, oxidoreductase; 1.98A
{Acidaminococcus fermentans}
Length = 331
Score = 60.3 bits (147), Expect = 1e-11
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 12/59 (20%)
Query: 5 LRCGHCGGAALDVFCEEPP-----KSEQTFE-------LIKHPKVIVTPHLGASTKEAQ 51
+ G GG DV E Q E + +P+V++TPHLG+ T EA
Sbjct: 248 VESGKLGGYGCDVLDGEASVFGKDLEGQKLENPLFEKLVDLYPRVLITPHLGSYTDEAV 306
>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein
structure initiative; 2.20A {Lactobacillus plantarum}
Length = 324
Score = 58.4 bits (142), Expect = 6e-11
Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 4/74 (5%)
Query: 5 LRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIRQDKQSIFYSLL 64
L AALDV EP ++ L + V++TPH+ + IF +
Sbjct: 241 LDHHQLSMAALDVTEPEPLPTDH--PLWQRDDVLITPHISGQIAHFRATVFP--IFAANF 296
Query: 65 GAELKNKQFLTTPV 78
+K+ + V
Sbjct: 297 AQFVKDGTLVRNQV 310
>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics,
riken structur genomics/proteomics initiative, RSGI,
NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}
Length = 311
Score = 55.6 bits (135), Expect = 5e-10
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 8 GHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIR 53
GH GA LDV EP L P ++TPH+G++ + + R
Sbjct: 245 GHLFGAGLDVTDPEPLPPGH--PLYALPNAVITPHIGSAGRTTRER 288
>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural
genomics, protein structure initiative, nysgrc, P
biology; 1.70A {Polaromonas SP}
Length = 345
Score = 55.7 bits (135), Expect = 6e-10
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 5 LRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEA 50
LR H A LDVF EP + +TPH+G++T E
Sbjct: 277 LRSKHLFAAGLDVFANEPAIDP---RYRSLDNIFLTPHIGSATHET 319
>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann
fold, formate/glycerate dehydrogenase substr binding
domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens}
PDB: 2wwr_A 2h1s_A 2q50_A
Length = 330
Score = 55.3 bits (134), Expect = 8e-10
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 5 LRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIR 53
L G A LDV EP + L+ ++ PH+G++T +
Sbjct: 260 LASGKIAAAGLDVTSPEPLPTNH--PLLTLKNCVILPHIGSATHRTRNT 306
>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center
for structural genomics of infec diseases, csgid; 2.10A
{Salmonella enterica subsp} PDB: 3kbo_A
Length = 315
Score = 53.1 bits (128), Expect = 4e-09
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Query: 5 LRCGHCGGAALDVFCEEP-PKSEQTFELIKHPKVIVTPHLGASTKEAQI 52
L G GA LDVF +EP P+ L +HP+V +TPH+ A T+ A+
Sbjct: 243 LDSGKLKGAMLDVFSQEPLPQESP---LWRHPRVAMTPHIAAVTRPAEA 288
>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein,
substrate binding domain, cofactor bindi domain,
oxidoreductase; 1.47A {Solenostemon scutellarioides}
PDB: 3baz_A*
Length = 333
Score = 52.6 bits (127), Expect = 7e-09
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 5 LRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEA 50
L G GGA LDVF EP E +L V++ PH+G+ T E
Sbjct: 265 LVEGRLGGAGLDVFEREPEVPE---KLFGLENVVLLPHVGSGTVET 307
>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc,
oxidoreductase; 2.50A {Sinorhizobium meliloti}
Length = 340
Score = 52.2 bits (126), Expect = 8e-09
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Query: 5 LRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEA 50
L+ G GA LDVF EP E P ++ PH G++T E
Sbjct: 272 LKSGTIAGAGLDVFVNEPAIRS---EFHTTPNTVLMPHQGSATVET 314
>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein;
structural genomics; 1.80A {Aeromonas salmonicida subsp}
Length = 324
Score = 51.2 bits (123), Expect = 2e-08
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 5 LRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGAST 47
LR G G A LDVF +EP ++ L P +I+TPH A +
Sbjct: 244 LRTGKLGMAVLDVFEQEPLPADS--PLWGQPNLIITPHNSAYS 284
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.3 bits (91), Expect = 3e-04
Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 16/76 (21%)
Query: 93 FINVNTYASEGGLKVAYEHDPSSSQNLVA--LAFGSNVAKHVLTVKQGLFTELLSYSLIL 150
F + +EG A + +P++ LV L + V+ V K G F ++L+ L
Sbjct: 37 FNKILPEPTEG---FAADDEPTTPAELVGKFLGY---VSSLVEPSKVGQFDQVLN----L 86
Query: 151 VLQEDTAQWSIPYLRS 166
L E YL
Sbjct: 87 CLTEFENC----YLEG 98
>3k9d_A LMO1179 protein, aldehyde dehydrogenase; structural genomics,
PSI-2, protein initiative; 2.00A {Listeria
monocytogenes}
Length = 464
Score = 25.8 bits (57), Expect = 8.1
Identities = 9/51 (17%), Positives = 21/51 (41%), Gaps = 14/51 (27%)
Query: 96 VNTYASEGGLKVAYEHDPSSSQNLVALAFGS--------NV-AKHVLTVKQ 137
VNT + GG+ P+ + L G+ N+ +++ +++
Sbjct: 399 VNTPGALGGIGATTNLVPALT-----LGCGAVGGSSSSDNIGPENLFNIRR 444
>4ehi_A Bifunctional purine biosynthesis protein PURH; structural genomics,
center for structural genomics of infec diseases, csgid;
HET: MSE BTB; 2.28A {Campylobacter jejuni subsp}
Length = 534
Score = 25.9 bits (58), Expect = 8.4
Identities = 5/28 (17%), Positives = 10/28 (35%), Gaps = 1/28 (3%)
Query: 105 LKVAYEHDPSSSQNLVALAFGSNVAKHV 132
K+ + + S + L L +A
Sbjct: 406 AKLMSQREASKEE-LKDLEIAMKIAAFT 432
>1zcz_A Bifunctional purine biosynthesis protein PURH; TM1249; HET: PG4;
1.88A {Thermotoga maritima} SCOP: c.24.1.3 c.97.1.4
Length = 464
Score = 25.9 bits (58), Expect = 8.9
Identities = 5/28 (17%), Positives = 9/28 (32%), Gaps = 1/28 (3%)
Query: 105 LKVAYEHDPSSSQNLVALAFGSNVAKHV 132
++ S + L L F V +
Sbjct: 339 FELVVGEPLSEKE-LEDLEFAYRVVEGA 365
>3zzm_A Bifunctional purine biosynthesis protein PURH; transferase,
hydrolase; HET: JLN; 2.20A {Mycobacterium tuberculosis}
PDB: 4a1o_A*
Length = 523
Score = 25.9 bits (58), Expect = 9.0
Identities = 5/32 (15%), Positives = 9/32 (28%), Gaps = 1/32 (3%)
Query: 101 SEGGLKVAYEHDPSSSQNLVALAFGSNVAKHV 132
+ +A + L L F + V
Sbjct: 394 NPANWTLATGSPADPAT-LTDLVFAWRACRAV 424
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.132 0.379
Gapped
Lambda K H
0.267 0.0783 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,329,226
Number of extensions: 120189
Number of successful extensions: 315
Number of sequences better than 10.0: 1
Number of HSP's gapped: 283
Number of HSP's successfully gapped: 40
Length of query: 168
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 81
Effective length of database: 4,272,666
Effective search space: 346085946
Effective search space used: 346085946
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.5 bits)