RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6351
(168 letters)
>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase
{Hyphomicrobium methylovorum [TaxId: 84]}
Length = 191
Score = 61.5 bits (148), Expect = 6e-13
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Query: 1 MKSELRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGAS 46
+ + L G A DVF EP +E P + PH+G++
Sbjct: 149 VVAALEAGRLAYAGFDVFAGEPNINE---GYYDLPNTFLFPHIGSA 191
>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase
{Escherichia coli [TaxId: 562]}
Length = 188
Score = 56.2 bits (134), Expect = 6e-11
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 1 MKSELRCGHCGGAALDVFCEEPPKSEQTF--ELIKHPKVIVTPHLG 44
+ L H GAA+DVF EP + F L + V++TPH+G
Sbjct: 142 LADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIG 187
>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 184
Score = 55.0 bits (131), Expect = 1e-10
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 6 RCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLG 44
GH A LDVF EP L + +V+VTPHLG
Sbjct: 149 TGGHVRAAGLDVFATEPCTD---SPLFELAQVVVTPHLG 184
>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp.,
strain 101 [TaxId: 306]}
Length = 188
Score = 55.0 bits (131), Expect = 1e-10
Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 1 MKSELRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLG 44
+ L G G A DV+ +P + P +TPH+
Sbjct: 146 VARALESGRLAGYAGDVWFPQPAPKDH--PWRTMPYNGMTPHIS 187
>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human
(Homo sapiens), Ctbp1 [TaxId: 9606]}
Length = 193
Score = 53.1 bits (126), Expect = 8e-10
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 1 MKSELRCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPH 42
+ L+ G GAALDV EP Q L P +I TPH
Sbjct: 150 LAQALKEGRIRGAALDVHESEPFSFSQG-PLKDAPNLICTPH 190
>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon
Pyrobaculum aerophilum [TaxId: 13773]}
Length = 181
Score = 52.8 bits (125), Expect = 9e-10
Identities = 8/38 (21%), Positives = 13/38 (34%), Gaps = 1/38 (2%)
Query: 7 CGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLG 44
A DV+ ++ E P V+ TP +
Sbjct: 144 ERPQFIFASDVWWGRNDFAKDA-EFFSLPNVVATPWVA 180
>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase
{Lactobacillus casei [TaxId: 1582]}
Length = 199
Score = 42.9 bits (99), Expect = 4e-06
Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 11/55 (20%)
Query: 1 MKSELRCGHCGGAALDVFCEEPPKSEQTF-----------ELIKHPKVIVTPHLG 44
M S L+ G G +D + E EL+ P V+++PH+
Sbjct: 143 MLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIA 197
>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus
helveticus [TaxId: 1587]}
Length = 197
Score = 40.9 bits (94), Expect = 2e-05
Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 11/49 (22%)
Query: 5 LRCGHCGGAALDVFCEEPPKSEQTFE-----------LIKHPKVIVTPH 42
L G G A+DV+ E + +E LI P V+VTP
Sbjct: 146 LDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADLIARPNVLVTPK 194
>d2jm6b1 f.1.4.1 (B:147-308) EAT/MCL-1 (Myeloid cell leukemia
sequence 1) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 162
Score = 27.6 bits (61), Expect = 0.58
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 119 LVALAFGSNVAKHVLTVKQGLFTELLSYSLILVLQEDTAQW 159
+ ++FG+ VAKH+ +V Q F E L+ ++ VL W
Sbjct: 100 VTLISFGAFVAKHLKSVNQESFIEPLAETITDVLVRTKRDW 140
>d1f16a_ f.1.4.1 (A:) Proapoptotic molecule Bax {Human (Homo
sapiens) [TaxId: 9606]}
Length = 192
Score = 25.6 bits (56), Expect = 3.0
Identities = 7/41 (17%), Positives = 12/41 (29%)
Query: 119 LVALAFGSNVAKHVLTVKQGLFTELLSYSLILVLQEDTAQW 159
+ F S + L K + + L+E W
Sbjct: 111 VALFYFASKLVLKALCTKVPELIRTIMGWTLDFLRERLLGW 151
>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 138
Score = 24.8 bits (54), Expect = 4.5
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 15 LDVFCEEPPKSEQTFELI-KHPKVIVTPHLGAST 47
++V S Q+FE+I K P P AS
Sbjct: 3 MEVIELNKCTSGQSFEVILKPPSFDGVPEFNASL 36
>d1g5ma_ f.1.4.1 (A:) Bcl-2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 164
Score = 24.5 bits (53), Expect = 6.2
Identities = 4/41 (9%), Positives = 12/41 (29%)
Query: 119 LVALAFGSNVAKHVLTVKQGLFTELLSYSLILVLQEDTAQW 159
+ FG + + + + ++ + L W
Sbjct: 105 VAFFEFGGVMCVESVNREMSPLVDNIALWMTEYLNRHLHTW 145
>d1gx5a_ e.8.1.4 (A:) Viral RNA polymerase {Hepatitis C virus
[TaxId: 11103]}
Length = 530
Score = 24.4 bits (53), Expect = 8.5
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 5/37 (13%)
Query: 16 DVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQI 52
+VFC +P K + K ++IV P LG E
Sbjct: 143 EVFCVQPEKGGR-----KPARLIVFPDLGVRVCEKMA 174
>d1oj4a2 d.58.26.5 (A:164-283) 4-(cytidine
5'-diphospho)-2C-methyl-D-erythritol kinase IspE
{Escherichia coli [TaxId: 562]}
Length = 120
Score = 23.8 bits (51), Expect = 8.6
Identities = 7/39 (17%), Positives = 12/39 (30%), Gaps = 5/39 (12%)
Query: 37 VIVTPHLGASTKEA-----QIRQDKQSIFYSLLGAELKN 70
++ P + T R + +LL E N
Sbjct: 8 LVAHPGVSIPTPVIFKDPELPRNTPKRSIETLLKCEFSN 46
>d1pq1a_ f.1.4.1 (A:) Apoptosis regulator Bcl-xL {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 196
Score = 24.2 bits (52), Expect = 8.9
Identities = 6/42 (14%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 119 LVAL-AFGSNVAKHVLTVKQGLFTELLSYSLILVLQEDTAQW 159
+VA +FG + + + + ++ + L + W
Sbjct: 140 IVAFFSFGGALCVESVDKEMQVLVSRIASWMATYLNDHLEPW 181
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.132 0.379
Gapped
Lambda K H
0.267 0.0423 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 554,054
Number of extensions: 21342
Number of successful extensions: 64
Number of sequences better than 10.0: 1
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 15
Length of query: 168
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 89
Effective length of database: 1,322,926
Effective search space: 117740414
Effective search space used: 117740414
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.8 bits)