Query psy6352
Match_columns 136
No_of_seqs 261 out of 1250
Neff 8.7
Searched_HMMs 46136
Date Sat Aug 17 00:13:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6352.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6352hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01607 CBM_14: Chitin bindin 99.5 1.4E-14 3.1E-19 82.3 2.0 48 88-135 6-53 (53)
2 PF01607 CBM_14: Chitin bindin 99.5 5.2E-14 1.1E-18 80.0 3.7 48 8-56 1-49 (53)
3 smart00494 ChtBD2 Chitin-bindi 99.4 1.1E-12 2.4E-17 75.0 5.2 50 7-57 2-52 (56)
4 smart00494 ChtBD2 Chitin-bindi 99.3 4.6E-12 1E-16 72.4 4.3 46 88-133 8-53 (56)
5 PF03427 CBM_19: Carbohydrate 92.2 0.16 3.5E-06 29.5 2.4 21 98-118 35-55 (61)
6 PF03427 CBM_19: Carbohydrate 91.9 0.21 4.5E-06 29.0 2.7 21 23-43 35-55 (61)
7 PF08475 Baculo_VP91_N: Viral 68.4 5.6 0.00012 28.3 2.7 38 90-129 106-143 (183)
8 PF08475 Baculo_VP91_N: Viral 67.6 8.6 0.00019 27.3 3.5 38 14-54 106-143 (183)
9 PF12662 cEGF: Complement Clr- 64.3 4.7 0.0001 18.8 1.1 16 37-52 5-20 (24)
10 cd00064 FU Furin-like repeats. 58.5 8.7 0.00019 20.6 1.8 18 109-126 31-48 (49)
11 PF01826 TIL: Trypsin Inhibito 53.7 2.4 5.2E-05 23.6 -1.1 19 111-130 35-53 (55)
12 PF00220 Hormone_4: Neurohypop 45.7 11 0.00023 13.4 0.5 6 36-41 4-9 (9)
13 PF09064 Tme5_EGF_like: Thromb 39.7 25 0.00054 17.9 1.5 21 28-48 12-32 (34)
14 PF07645 EGF_CA: Calcium-bindi 38.8 13 0.00027 19.4 0.4 32 19-51 10-42 (42)
15 PF03128 CXCXC: CXCXC repeat; 30.4 40 0.00088 13.4 1.2 12 116-127 1-12 (14)
16 PF04833 COBRA: COBRA-like pro 30.4 55 0.0012 23.0 2.5 34 93-126 43-82 (169)
17 PHA02714 CD-30-like protein; P 23.5 43 0.00094 21.3 0.9 20 108-127 19-38 (110)
18 PF14670 FXa_inhibition: Coagu 20.9 57 0.0012 16.6 0.9 29 20-51 7-36 (36)
19 PF00396 Granulin: Granulin; 20.6 66 0.0014 17.2 1.2 17 36-52 26-42 (43)
No 1
>PF01607 CBM_14: Chitin binding Peritrophin-A domain; InterPro: IPR002557 This entry represents a chitin binding domain []. It is found in (amongst others) the Peritrophin-A chitin binding proteins, particularly the peritrophic matrix proteins of insects and animal chitinases [, , ]. Copies of the domain are also found in some baculoviruses. It is an extracellular domain that contains six conserved cysteines that probably form three disulphide bridges. Chitin binding has been demonstrated for a protein containing only two of these domains [].; GO: 0008061 chitin binding, 0006030 chitin metabolic process, 0005576 extracellular region; PDB: 1DQC_A.
Probab=99.48 E-value=1.4e-14 Score=82.31 Aligned_cols=48 Identities=27% Similarity=0.573 Sum_probs=36.8
Q ss_pred CCCCCCCcCCCccEEcCCCceeeeeCCCCCceeccCCCCCCCCCCCCC
Q psy6352 88 YPRFPVPGDRERLITCVDGHPRLISCGDGKLFDEASLTCLGPEDYTDK 135 (136)
Q Consensus 88 ~~~~~~~~~C~~y~~C~~g~~~~~~Cp~g~~F~~~~~~C~~~~~V~~c 135 (136)
.|+++++.+|++||+|.+|.++++.||.|++||+.+++|+++++|..|
T Consensus 6 ~~~~~~~~~C~~Y~~C~~g~~~~~~C~~g~~fd~~~~~C~~~~~~~~C 53 (53)
T PF01607_consen 6 DGFYPHPDDCRKYYQCVNGQAVEQRCPEGLYFDPSSQRCVPPSNVVQC 53 (53)
T ss_dssp SEEE--SS-SSEEEEEETTEEEEEE-TTS-EE-TTTSSEE-TTT-TT-
T ss_pred CeeEeCCCCCCEEEEeeCCcEECCCCcCCCEECcCcCEEcCCccCCCC
Confidence 457899999999999999999999999999999999999999997766
No 2
>PF01607 CBM_14: Chitin binding Peritrophin-A domain; InterPro: IPR002557 This entry represents a chitin binding domain []. It is found in (amongst others) the Peritrophin-A chitin binding proteins, particularly the peritrophic matrix proteins of insects and animal chitinases [, , ]. Copies of the domain are also found in some baculoviruses. It is an extracellular domain that contains six conserved cysteines that probably form three disulphide bridges. Chitin binding has been demonstrated for a protein containing only two of these domains [].; GO: 0008061 chitin binding, 0006030 chitin metabolic process, 0005576 extracellular region; PDB: 1DQC_A.
Probab=99.47 E-value=5.2e-14 Score=79.97 Aligned_cols=48 Identities=29% Similarity=0.673 Sum_probs=36.4
Q ss_pred CCC-CCccccCCCCCCcceEEcCCCceeEecCCCCCeeecCCCccCCCCC
Q psy6352 8 CEF-KYGIYAESSACSTNYIKCEEGYPYLQPCEPGLAYDDRVHKCNWPDE 56 (136)
Q Consensus 8 C~~-~~g~~~~p~~C~~~y~~C~~g~~~~~~Cp~gl~Fd~~~~~C~~~~~ 56 (136)
|+. .+|+++++.+|+ +||+|.+|.+++++||.|++||+.+++|+++..
T Consensus 1 C~~~~~~~~~~~~~C~-~Y~~C~~g~~~~~~C~~g~~fd~~~~~C~~~~~ 49 (53)
T PF01607_consen 1 CPGRGDGFYPHPDDCR-KYYQCVNGQAVEQRCPEGLYFDPSSQRCVPPSN 49 (53)
T ss_dssp ----SSEEE--SS-SS-EEEEEETTEEEEEE-TTS-EE-TTTSSEE-TTT
T ss_pred CCccCCeeEeCCCCCC-EEEEeeCCcEECCCCcCCCEECcCcCEEcCCcc
Confidence 453 578999999999 999999999999999999999999999999987
No 3
>smart00494 ChtBD2 Chitin-binding domain type 2.
Probab=99.37 E-value=1.1e-12 Score=75.00 Aligned_cols=50 Identities=34% Similarity=0.961 Sum_probs=46.0
Q ss_pred CCCC-CCccccCCCCCCcceEEcCCCceeEecCCCCCeeecCCCccCCCCCC
Q psy6352 7 PCEF-KYGIYAESSACSTNYIKCEEGYPYLQPCEPGLAYDDRVHKCNWPDEL 57 (136)
Q Consensus 7 ~C~~-~~g~~~~p~~C~~~y~~C~~g~~~~~~Cp~gl~Fd~~~~~C~~~~~~ 57 (136)
.|.. ..|+++++.+|+ +||+|.+|.+..+.||.|++||..++.|+++..+
T Consensus 2 ~C~~~~~g~~~~~~~C~-~y~~C~~~~~~~~~C~~g~~f~~~~~~C~~~~~~ 52 (56)
T smart00494 2 ECPGRGDGLYPHPTDCS-KYYQCSNGRPIVGSCPAGLVFDPATQTCDWPDNV 52 (56)
T ss_pred cCCCCCCccccCcccCC-eeEEcCCCcEEeccCcCCCeECCCCCCcCCcccC
Confidence 4665 478999999999 8999999999999999999999999999999876
No 4
>smart00494 ChtBD2 Chitin-binding domain type 2.
Probab=99.29 E-value=4.6e-12 Score=72.38 Aligned_cols=46 Identities=33% Similarity=0.621 Sum_probs=42.9
Q ss_pred CCCCCCCcCCCccEEcCCCceeeeeCCCCCceeccCCCCCCCCCCC
Q psy6352 88 YPRFPVPGDRERLITCVDGHPRLISCGDGKLFDEASLTCLGPEDYT 133 (136)
Q Consensus 88 ~~~~~~~~~C~~y~~C~~g~~~~~~Cp~g~~F~~~~~~C~~~~~V~ 133 (136)
.++++|+.+|++||+|.+|.++.+.||.|++||..++.|++++++.
T Consensus 8 ~g~~~~~~~C~~y~~C~~~~~~~~~C~~g~~f~~~~~~C~~~~~~~ 53 (56)
T smart00494 8 DGLYPHPTDCSKYYQCSNGRPIVGSCPAGLVFDPATQTCDWPDNVG 53 (56)
T ss_pred CccccCcccCCeeEEcCCCcEEeccCcCCCeECCCCCCcCCcccCC
Confidence 4689999999999999999999999999999999999999998753
No 5
>PF03427 CBM_19: Carbohydrate binding domain (family 19); InterPro: IPR005089 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM19 from CAZY which consists of 60-70 residues with chitin-binding function.; GO: 0004568 chitinase activity, 0006032 chitin catabolic process
Probab=92.21 E-value=0.16 Score=29.49 Aligned_cols=21 Identities=19% Similarity=0.406 Sum_probs=19.4
Q ss_pred CccEEcCCCceeeeeCCCCCc
Q psy6352 98 ERLITCVDGHPRLISCGDGKL 118 (136)
Q Consensus 98 ~~y~~C~~g~~~~~~Cp~g~~ 118 (136)
.+|-+|.+|+.+.+.||+|++
T Consensus 35 G~faiC~~G~Wv~~~C~~Gt~ 55 (61)
T PF03427_consen 35 GSFAICDHGTWVITPCPAGTT 55 (61)
T ss_pred CCEEEcCCCcEEEeeCCCCCE
Confidence 489999999999999999986
No 6
>PF03427 CBM_19: Carbohydrate binding domain (family 19); InterPro: IPR005089 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM19 from CAZY which consists of 60-70 residues with chitin-binding function.; GO: 0004568 chitinase activity, 0006032 chitin catabolic process
Probab=91.90 E-value=0.21 Score=29.02 Aligned_cols=21 Identities=24% Similarity=0.679 Sum_probs=19.4
Q ss_pred cceEEcCCCceeEecCCCCCe
Q psy6352 23 TNYIKCEEGYPYLQPCEPGLA 43 (136)
Q Consensus 23 ~~y~~C~~g~~~~~~Cp~gl~ 43 (136)
++|-+|.+|.+....||+|++
T Consensus 35 G~faiC~~G~Wv~~~C~~Gt~ 55 (61)
T PF03427_consen 35 GSFAICDHGTWVITPCPAGTT 55 (61)
T ss_pred CCEEEcCCCcEEEeeCCCCCE
Confidence 379999999999999999986
No 7
>PF08475 Baculo_VP91_N: Viral capsid protein 91 N-terminal; InterPro: IPR013682 This domain is found in Baculoviridae including the nucleopolyhedrovirus at the N terminus of the viral capsid protein 91 (VP91) [].
Probab=68.37 E-value=5.6 Score=28.28 Aligned_cols=38 Identities=24% Similarity=0.379 Sum_probs=31.9
Q ss_pred CCCCCcCCCccEEcCCCceeeeeCCCCCceeccCCCCCCC
Q psy6352 90 RFPVPGDRERLITCVDGHPRLISCGDGKLFDEASLTCLGP 129 (136)
Q Consensus 90 ~~~~~~~C~~y~~C~~g~~~~~~Cp~g~~F~~~~~~C~~~ 129 (136)
.-+|+.|=+||..=.+.-...++||.+..||.. +|+..
T Consensus 106 V~~~~~d~~kF~~~~DDGwv~~~CP~~~~FD~~--~Cvp~ 143 (183)
T PF08475_consen 106 VRPHPNDPTKFIARGDDGWVDMDCPENERFDGN--KCVPI 143 (183)
T ss_pred eecCCCCCceEEEEecCCcEEEeCCCccccccc--ceeec
Confidence 346788889999877766899999999999998 88754
No 8
>PF08475 Baculo_VP91_N: Viral capsid protein 91 N-terminal; InterPro: IPR013682 This domain is found in Baculoviridae including the nucleopolyhedrovirus at the N terminus of the viral capsid protein 91 (VP91) [].
Probab=67.65 E-value=8.6 Score=27.34 Aligned_cols=38 Identities=13% Similarity=0.155 Sum_probs=32.2
Q ss_pred cccCCCCCCcceEEcCCCceeEecCCCCCeeecCCCccCCC
Q psy6352 14 IYAESSACSTNYIKCEEGYPYLQPCEPGLAYDDRVHKCNWP 54 (136)
Q Consensus 14 ~~~~p~~C~~~y~~C~~g~~~~~~Cp~gl~Fd~~~~~C~~~ 54 (136)
+-+++.+=+ +|..=.+-....++||.+..||.. +|+..
T Consensus 106 V~~~~~d~~-kF~~~~DDGwv~~~CP~~~~FD~~--~Cvp~ 143 (183)
T PF08475_consen 106 VRPHPNDPT-KFIARGDDGWVDMDCPENERFDGN--KCVPI 143 (183)
T ss_pred eecCCCCCc-eEEEEecCCcEEEeCCCccccccc--ceeec
Confidence 457888888 898877767999999999999998 99843
No 9
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=64.26 E-value=4.7 Score=18.82 Aligned_cols=16 Identities=25% Similarity=0.723 Sum_probs=13.4
Q ss_pred cCCCCCeeecCCCccC
Q psy6352 37 PCEPGLAYDDRVHKCN 52 (136)
Q Consensus 37 ~Cp~gl~Fd~~~~~C~ 52 (136)
+|+.|+..++..+.|.
T Consensus 5 ~C~~Gy~l~~d~~~C~ 20 (24)
T PF12662_consen 5 SCPPGYQLSPDGRSCE 20 (24)
T ss_pred eCCCCCcCCCCCCccc
Confidence 6899999888888776
No 10
>cd00064 FU Furin-like repeats. Cysteine rich region. Exact function of the domain is not known. Furin is a serine-kinase dependent proprotein processor. Other members of this family include endoproteases and cell surface receptors.
Probab=58.48 E-value=8.7 Score=20.64 Aligned_cols=18 Identities=22% Similarity=0.503 Sum_probs=14.1
Q ss_pred eeeeCCCCCceeccCCCC
Q psy6352 109 RLISCGDGKLFDEASLTC 126 (136)
Q Consensus 109 ~~~~Cp~g~~F~~~~~~C 126 (136)
=+..||.+++++.....|
T Consensus 31 Cv~~C~~~~~~~~~~~~C 48 (49)
T cd00064 31 CVSECPEGTYADTEGGVC 48 (49)
T ss_pred ccccCCCCceecCcCCcC
Confidence 344899999999777766
No 11
>PF01826 TIL: Trypsin Inhibitor like cysteine rich domain; InterPro: IPR002919 This domain is found in proteinase inhibitors as well as in many extracellular proteins. The domain typically contains ten cysteine residues that form five disulphide bonds. The cysteine residues that form the disulphide bonds are 1-7, 2-6, 3-5, 4-10 and 8-9. This inhibitor domain belongs to MEROPS inhibitor family I8 (clan IA). Proteins containing this domain inhibit peptidases belonging to families S1 (IPR001254 from INTERPRO), S8 (IPR000209 from INTERPRO), and M4 (IPR001570 from INTERPRO) [] and are restricted to the chordata, nematoda, arthropoda and echinodermata. Examples of proteins containing this domain are: chymotrypsin/elastase inhibitor from Ascaris suum (pig roundworm) Acp62F protein from Drosophila melanogaster Bombina trypsin inhibitor from Bombina maxima (large-webbed bell toad) Bombyx subtilisin inhibitor from Bombyx mori (silk moth) von Willebrand factor ; PDB: 2P3F_N 1HX2_A 1CCV_A 1EAI_D 2H9E_C 1COU_A 1ATE_A 1ATB_A 1ATD_A 1ATA_A ....
Probab=53.71 E-value=2.4 Score=23.58 Aligned_cols=19 Identities=21% Similarity=0.490 Sum_probs=14.8
Q ss_pred eeCCCCCceeccCCCCCCCC
Q psy6352 111 ISCGDGKLFDEASLTCLGPE 130 (136)
Q Consensus 111 ~~Cp~g~~F~~~~~~C~~~~ 130 (136)
=.|+.|++++.. +.|+.++
T Consensus 35 C~C~~G~v~~~~-~~CV~~~ 53 (55)
T PF01826_consen 35 CFCPPGYVRNDN-GRCVPPS 53 (55)
T ss_dssp EEETTTEEEETT-SEEEEGG
T ss_pred CCCCCCeeEcCC-CCEEcHH
Confidence 358999999888 8887654
No 12
>PF00220 Hormone_4: Neurohypophysial hormones, N-terminal Domain; InterPro: IPR022423 Oxytocin (or ocytocin) and vasopressin [] are small (nine amino acid residues), structurally and functionally related neurohypophysial peptide hormones. Oxytocin causes contraction of the smooth muscle of the uterus and of the mammary gland while vasopressin has a direct antidiuretic action on the kidney and also causes vasoconstriction of the peripheral vessels. Like the majority of active peptides, both hormones are synthesized as larger protein precursors that are enzymatically converted to their mature forms. Peptides belonging to this family are also found in birds, fish, reptiles and amphibians (mesotocin, isotocin, valitocin, glumitocin, aspargtocin, vasotocin, seritocin, asvatocin, phasvatocin), in worms (annetocin), octopi (cephalotocin), locust (locupressin or neuropeptide F1/F2) and in molluscs (conopressins G and S) []. The pattern developed to detect this category of peptides spans their entire sequence and includes four invariant amino acid residues. .; GO: 0005185 neurohypophyseal hormone activity, 0005576 extracellular region
Probab=45.71 E-value=11 Score=13.39 Aligned_cols=6 Identities=33% Similarity=0.866 Sum_probs=2.8
Q ss_pred ecCCCC
Q psy6352 36 QPCEPG 41 (136)
Q Consensus 36 ~~Cp~g 41 (136)
+.||.|
T Consensus 4 ~nCP~G 9 (9)
T PF00220_consen 4 RNCPIG 9 (9)
T ss_pred ccCCCC
Confidence 445543
No 13
>PF09064 Tme5_EGF_like: Thrombomodulin like fifth domain, EGF-like; InterPro: IPR015149 This domain adopts a fold similar to other EGF domains, with a flat major and a twisted minor beta sheet. Disulphide pairing, however, is not of the usual 1-3, 2-4, 5-6 type; rather 1-2, 3-4, 5-6 pairing is found. Its extended major sheet (strands beta-2 and beta-3 and the connecting loop) projects into thrombin's active site groove. This domain is required for interaction of thrombomodulin with thrombin, and subsequent activation of protein-C []. ; GO: 0004888 transmembrane signaling receptor activity, 0016021 integral to membrane
Probab=39.73 E-value=25 Score=17.88 Aligned_cols=21 Identities=24% Similarity=0.472 Sum_probs=13.7
Q ss_pred cCCCceeEecCCCCCeeecCC
Q psy6352 28 CEEGYPYLQPCEPGLAYDDRV 48 (136)
Q Consensus 28 C~~g~~~~~~Cp~gl~Fd~~~ 48 (136)
|.......=.||+|++.|...
T Consensus 12 CDpn~~~~C~CPeGyIlde~~ 32 (34)
T PF09064_consen 12 CDPNSPGQCFCPEGYILDEGS 32 (34)
T ss_pred cCCCCCCceeCCCceEecCCc
Confidence 333333455799999998754
No 14
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins. Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
Probab=38.77 E-value=13 Score=19.42 Aligned_cols=32 Identities=25% Similarity=0.595 Sum_probs=22.5
Q ss_pred CCCCcceEEcCCCc-eeEecCCCCCeeecCCCcc
Q psy6352 19 SACSTNYIKCEEGY-PYLQPCEPGLAYDDRVHKC 51 (136)
Q Consensus 19 ~~C~~~y~~C~~g~-~~~~~Cp~gl~Fd~~~~~C 51 (136)
..|. ..-.|+|.. .+.=.|+.|+..+.....|
T Consensus 10 ~~C~-~~~~C~N~~Gsy~C~C~~Gy~~~~~~~~C 42 (42)
T PF07645_consen 10 HNCP-ENGTCVNTEGSYSCSCPPGYELNDDGTTC 42 (42)
T ss_dssp SSSS-TTSEEEEETTEEEEEESTTEEECTTSSEE
T ss_pred CcCC-CCCEEEcCCCCEEeeCCCCcEECCCCCcC
Confidence 3576 677788755 3445799999987776655
No 15
>PF03128 CXCXC: CXCXC repeat; InterPro: IPR004153 This repeat contains the conserved pattern CXCXC where X can be any amino acid. The repeat is found in up to five copies in Vascular endothelial growth factor C []. In the salivary glands of the dipteran Chironomus tentans, a specific messenger ribonucleoprotein (mRNP) particle, the Balbiani ring (BR) granule, can be visualized during its assembly on the gene and during its nucleocytoplasmic transport. This repeat is found over 70 copies in the balbiani ring protein 3 (Q03376 from SWISSPROT). It is also found in some silk proteins [].
Probab=30.42 E-value=40 Score=13.40 Aligned_cols=12 Identities=8% Similarity=0.517 Sum_probs=8.1
Q ss_pred CCceeccCCCCC
Q psy6352 116 GKLFDEASLTCL 127 (136)
Q Consensus 116 g~~F~~~~~~C~ 127 (136)
+++||..+=.|.
T Consensus 1 ~q~wn~~tC~C~ 12 (14)
T PF03128_consen 1 PQVWNDDTCQCE 12 (14)
T ss_pred CceecCCCcCcc
Confidence 457777776665
No 16
>PF04833 COBRA: COBRA-like protein; InterPro: IPR006918 In Arabidopsis thaliana (Mouse-ear cress) members of the family are all extracellular glycosyl-phosphatidyl inositol-anchored proteins (GPI-linked) []. The type example of the family is COBRA (Q94KT8 from SWISSPROT) and the family is generally annotated as COBRA-like (COBL). COBRA is involved in determining the orientation of cell expansion, probably by playing an important role in cellulose deposition. It may act by recruiting cellulose synthesizing complexes to discrete positions on the cell surface. Some members of this family are annotated as phytochelatin synthase, but these annotations are incorrect [].
Probab=30.38 E-value=55 Score=23.03 Aligned_cols=34 Identities=18% Similarity=0.495 Sum_probs=27.8
Q ss_pred CCcCCCccE------EcCCCceeeeeCCCCCceeccCCCC
Q psy6352 93 VPGDRERLI------TCVDGHPRLISCGDGKLFDEASLTC 126 (136)
Q Consensus 93 ~~~~C~~y~------~C~~g~~~~~~Cp~g~~F~~~~~~C 126 (136)
+.+||++|+ .|=.-.+.+.+=|+|.-+|.....|
T Consensus 43 dqgdCs~~~~~~~~ph~C~k~P~IvDLpp~~~~n~qi~nC 82 (169)
T PF04833_consen 43 DQGDCSKFYKDGDFPHCCKKRPTIVDLPPGTPYNQQIGNC 82 (169)
T ss_pred cCCcccccccCCCCCcccCCCCEEEeCCCCCCCccccccc
Confidence 567888888 6666678888889999999888777
No 17
>PHA02714 CD-30-like protein; Provisional
Probab=23.50 E-value=43 Score=21.34 Aligned_cols=20 Identities=10% Similarity=0.165 Sum_probs=16.8
Q ss_pred eeeeeCCCCCceeccCCCCC
Q psy6352 108 PRLISCGDGKLFDEASLTCL 127 (136)
Q Consensus 108 ~~~~~Cp~g~~F~~~~~~C~ 127 (136)
....+|+.++++|++.++|.
T Consensus 19 sf~kqC~~dYY~Dpe~g~Ct 38 (110)
T PHA02714 19 SFGKTCPKDYYLEPEDGLCT 38 (110)
T ss_pred hhhccCCCcccccCCCCcee
Confidence 45678999999999988884
No 18
>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A ....
Probab=20.91 E-value=57 Score=16.60 Aligned_cols=29 Identities=28% Similarity=0.699 Sum_probs=17.3
Q ss_pred CCCcceEEcCCCc-eeEecCCCCCeeecCCCcc
Q psy6352 20 ACSTNYIKCEEGY-PYLQPCEPGLAYDDRVHKC 51 (136)
Q Consensus 20 ~C~~~y~~C~~g~-~~~~~Cp~gl~Fd~~~~~C 51 (136)
.|+ .+ |++.. .+.=+||.|+.-++..+.|
T Consensus 7 gC~-h~--C~~~~g~~~C~C~~Gy~L~~D~~tC 36 (36)
T PF14670_consen 7 GCS-HI--CVNTPGSYRCSCPPGYKLAEDGRTC 36 (36)
T ss_dssp GSS-SE--EEEETTSEEEE-STTEEE-TTSSSE
T ss_pred CcC-CC--CccCCCceEeECCCCCEECcCCCCC
Confidence 365 33 66432 3556899999888876665
No 19
>PF00396 Granulin: Granulin; InterPro: IPR000118 Metazoan granulins [] are a family of cysteine-rich peptides of about 6 Kd which may have multiple biological activity. A precursor protein (known as acrogranin) potentially encodes seven different forms of granulin (grnA to grnG) which are probably released by post-translational proteolytic processing. Granulins are evolutionary related to a PMP-D1, a peptide extracted from the pars intercerebralis of migratory locusts []. A schematic representation of the structure of a granulin is shown below: xxxCxxxxxCxxxxxCCxxxxxxxxCCxxxxxxCCxxxxxCCxxxxxCxxxxxxCx 'C': conserved cysteine probably involved in a disulphide bond. In plants a granulin domain is often associated with the C terminus of cysteine proteases belong to the MEROPS peptidase family C1, subfamily C1A (papain).; PDB: 1I8Y_A 1QGM_A 1I8X_A 2JYT_A 2JYU_A 1FWO_A 2JYV_A 2JYE_A 1G26_A.
Probab=20.56 E-value=66 Score=17.17 Aligned_cols=17 Identities=24% Similarity=0.442 Sum_probs=13.2
Q ss_pred ecCCCCCeeecCCCccC
Q psy6352 36 QPCEPGLAYDDRVHKCN 52 (136)
Q Consensus 36 ~~Cp~gl~Fd~~~~~C~ 52 (136)
.=||.|+.=|.+.+.|.
T Consensus 26 hCCP~G~~C~~~~~~C~ 42 (43)
T PF00396_consen 26 HCCPHGYTCDPDGGSCI 42 (43)
T ss_dssp TSSSTTSEEECTTTEEE
T ss_pred ccCCCcCEECCCCCEEc
Confidence 45788988888877774
Done!