Query psy6352
Match_columns 136
No_of_seqs 261 out of 1250
Neff 8.7
Searched_HMMs 29240
Date Sat Aug 17 00:14:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6352.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6352hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dqc_A Tachycitin; disulfide-r 99.7 8.9E-17 3E-21 97.2 5.4 56 5-65 9-64 (74)
2 1dqc_A Tachycitin; disulfide-r 99.6 5.6E-16 1.9E-20 93.7 2.6 47 88-135 15-61 (74)
3 1wb0_A Chitinase 1, chitotrios 99.1 6.6E-12 2.2E-16 98.6 0.0 49 5-54 396-445 (445)
4 1wb0_A Chitinase 1, chitotrios 98.9 1.6E-10 5.5E-15 90.7 0.0 42 88-129 404-445 (445)
5 3ssb_I IMPI alpha, inducible m 62.8 1.1 3.9E-05 21.7 -0.5 21 112-133 8-28 (32)
6 1ccv_A AMCI, chymotrypsin inhi 52.7 2.9 9.9E-05 22.7 -0.0 19 111-130 36-54 (56)
7 1xu2_R Tumor necrosis factor r 43.3 8.2 0.00028 20.3 0.8 17 36-52 2-18 (47)
8 2p3f_N Anti-coagulant protein 43.3 6 0.00021 23.1 0.4 22 111-132 49-70 (78)
9 1iyc_A Scarabaecin; antifungal 41.1 11 0.00038 18.0 1.0 11 111-121 16-26 (36)
10 2oqj_C Peptide 2G12.1 (ACPPSHV 36.7 15 0.0005 16.3 1.0 18 37-54 1-18 (26)
11 2b5b_A Defensin; antibiotic; N 31.2 11 0.00038 17.9 0.1 13 93-105 20-32 (36)
12 3urf_Z Tumor necrosis factor r 26.2 21 0.00071 23.9 0.9 32 2-34 78-109 (171)
13 2h9e_C Anti-coagulant protein 24.8 13 0.00044 21.9 -0.4 19 111-130 50-68 (84)
14 1hx2_A BSTI; beta-sheet disulf 24.0 27 0.00092 18.8 0.9 20 111-130 38-58 (60)
15 2jye_A Granulin A; epithelin, 21.2 46 0.0016 19.1 1.5 21 111-131 42-62 (72)
No 1
>1dqc_A Tachycitin; disulfide-rich, antimicrobial protein; NMR {Tachypleus tridentatus} SCOP: g.31.1.1
Probab=99.66 E-value=8.9e-17 Score=97.23 Aligned_cols=56 Identities=29% Similarity=0.741 Sum_probs=51.4
Q ss_pred CCCCCCCCccccCCCCCCcceEEcCCCceeEecCCCCCeeecCCCccCCCCCCCCCCCCcc
Q psy6352 5 NPPCEFKYGIYAESSACSTNYIKCEEGYPYLQPCEPGLAYDDRVHKCNWPDELKDIGCNSE 65 (136)
Q Consensus 5 ~~~C~~~~g~~~~p~~C~~~y~~C~~g~~~~~~Cp~gl~Fd~~~~~C~~~~~~~~~~C~~~ 65 (136)
.+.|+. +|+|+||.+|+ +||+|.+|.++++.||.||+||+.++.|+|+++| .|...
T Consensus 9 ~~~C~~-~G~~~~p~dC~-~fy~C~~G~~~~~~Cp~Gl~Fn~~~~~Cd~p~~v---~C~~~ 64 (74)
T 1dqc_A 9 YSPCLD-DGPNVNLYSCC-SFYNCHKCLARLENCPKGLHYNAYLKVCDWPSKA---GCTSV 64 (74)
T ss_dssp GCCSSS-SEEECCSSCSS-EEEEEETTEEEEEECTTSCEEETTTTEEECTTTT---TCCSS
T ss_pred CCcCCC-CCEeCCcccCc-ceeECCCCcEEEeECcCCCEEChhhCcCcCcccC---CCCCC
Confidence 367886 89999999999 9999999999999999999999999999999998 58654
No 2
>1dqc_A Tachycitin; disulfide-rich, antimicrobial protein; NMR {Tachypleus tridentatus} SCOP: g.31.1.1
Probab=99.58 E-value=5.6e-16 Score=93.68 Aligned_cols=47 Identities=15% Similarity=0.081 Sum_probs=44.4
Q ss_pred CCCCCCCcCCCccEEcCCCceeeeeCCCCCceeccCCCCCCCCCCCCC
Q psy6352 88 YPRFPVPGDRERLITCVDGHPRLISCGDGKLFDEASLTCLGPEDYTDK 135 (136)
Q Consensus 88 ~~~~~~~~~C~~y~~C~~g~~~~~~Cp~g~~F~~~~~~C~~~~~V~~c 135 (136)
.|+|+||.+|++||+|.+|.++++.||.||+||++++.|+||++|. |
T Consensus 15 ~G~~~~p~dC~~fy~C~~G~~~~~~Cp~Gl~Fn~~~~~Cd~p~~v~-C 61 (74)
T 1dqc_A 15 DGPNVNLYSCCSFYNCHKCLARLENCPKGLHYNAYLKVCDWPSKAG-C 61 (74)
T ss_dssp SEEECCSSCSSEEEEEETTEEEEEECTTSCEEETTTTEEECTTTTT-C
T ss_pred CCEeCCcccCcceeECCCCcEEEeECcCCCEEChhhCcCcCcccCC-C
Confidence 3689999999999999999999999999999999999999999985 5
No 3
>1wb0_A Chitinase 1, chitotriosidase 1; cyclopentapeptide inhibitors, chitinase inhibitors, carbohyd metabolism, chitin degradation, chitin-binding; HET: VR0 MEA; 1.65A {Homo sapiens} SCOP: c.1.8.5 d.26.3.1 PDB: 1waw_A* 1guv_A 1lg2_A 1lg1_A 1lq0_A 1hki_A* 1hkj_A* 1hkm_A* 1hkk_A*
Probab=99.11 E-value=6.6e-12 Score=98.63 Aligned_cols=49 Identities=27% Similarity=0.708 Sum_probs=0.0
Q ss_pred CCCCCCC-CccccCCCCCCcceEEcCCCceeEecCCCCCeeecCCCccCCC
Q psy6352 5 NPPCEFK-YGIYAESSACSTNYIKCEEGYPYLQPCEPGLAYDDRVHKCNWP 54 (136)
Q Consensus 5 ~~~C~~~-~g~~~~p~~C~~~y~~C~~g~~~~~~Cp~gl~Fd~~~~~C~~~ 54 (136)
++.|+.+ +|++|||.+|+ +||+|.+|.++++.||.||+||+..+.|+||
T Consensus 396 ~~~C~~~~~G~~~~p~~C~-~fy~C~~g~~~~~~Cp~Gl~f~~~~~~Cd~p 445 (445)
T 1wb0_A 396 DTFCQGKADGLYPNPRERS-SFYSCAAGRLFQQSCPTGLVFSNSCKCCTWN 445 (445)
T ss_dssp ---------------------------------------------------
T ss_pred CCcCCCCCCcccCCCCCCC-cccCCCCCCEEeCCCcCCCEECcccCCCCCC
Confidence 4579975 89999999999 9999999999999999999999999999996
No 4
>1wb0_A Chitinase 1, chitotriosidase 1; cyclopentapeptide inhibitors, chitinase inhibitors, carbohyd metabolism, chitin degradation, chitin-binding; HET: VR0 MEA; 1.65A {Homo sapiens} SCOP: c.1.8.5 d.26.3.1 PDB: 1waw_A* 1guv_A 1lg2_A 1lg1_A 1lq0_A 1hki_A* 1hkj_A* 1hkm_A* 1hkk_A*
Probab=98.90 E-value=1.6e-10 Score=90.74 Aligned_cols=42 Identities=24% Similarity=0.484 Sum_probs=0.0
Q ss_pred CCCCCCCcCCCccEEcCCCceeeeeCCCCCceeccCCCCCCC
Q psy6352 88 YPRFPVPGDRERLITCVDGHPRLISCGDGKLFDEASLTCLGP 129 (136)
Q Consensus 88 ~~~~~~~~~C~~y~~C~~g~~~~~~Cp~g~~F~~~~~~C~~~ 129 (136)
.|+++||.+|++||+|.+|.+..+.||.||+||++++.|+||
T Consensus 404 ~G~~~~p~~C~~fy~C~~g~~~~~~Cp~Gl~f~~~~~~Cd~p 445 (445)
T 1wb0_A 404 DGLYPNPRERSSFYSCAAGRLFQQSCPTGLVFSNSCKCCTWN 445 (445)
T ss_dssp ------------------------------------------
T ss_pred CcccCCCCCCCcccCCCCCCEEeCCCcCCCEECcccCCCCCC
Confidence 589999999999999999999999999999999999999997
No 5
>3ssb_I IMPI alpha, inducible metalloproteinase inhibitor protein; thermolysin fold - family I8 fold, metalloprotease thermoLys inhibitor; 1.80A {Galleria mellonella}
Probab=62.77 E-value=1.1 Score=21.72 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=15.7
Q ss_pred eCCCCCceeccCCCCCCCCCCC
Q psy6352 112 SCGDGKLFDEASLTCLGPEDYT 133 (136)
Q Consensus 112 ~Cp~g~~F~~~~~~C~~~~~V~ 133 (136)
.|+.|++.|. .+.|+.+++-+
T Consensus 8 ~C~~G~vrn~-~G~CV~~~~Cp 28 (32)
T 3ssb_I 8 YCEDGYARDV-NGKCIPIKDCP 28 (32)
T ss_dssp EECTTEEECT-TSCEEEGGGCC
T ss_pred CcCCCcEECC-CCCEECHHHCc
Confidence 5889998886 67788776543
No 6
>1ccv_A AMCI, chymotrypsin inhibitor; protein inhibitor, hemolymph, canonical inhibitor, hydrolase inhibitor; NMR {Apis mellifera} SCOP: g.22.1.1
Probab=52.74 E-value=2.9 Score=22.66 Aligned_cols=19 Identities=32% Similarity=0.599 Sum_probs=15.0
Q ss_pred eeCCCCCceeccCCCCCCCC
Q psy6352 111 ISCGDGKLFDEASLTCLGPE 130 (136)
Q Consensus 111 ~~Cp~g~~F~~~~~~C~~~~ 130 (136)
=.|+.|+|+|.. +.|+.++
T Consensus 36 C~C~~G~v~~~~-g~CV~~~ 54 (56)
T 1ccv_A 36 CQCQEGFLRNGE-GACVLPE 54 (56)
T ss_dssp EEECTTCEEETT-TEEECGG
T ss_pred CcCCCCeeECCC-CcccChh
Confidence 579999999874 7887664
No 7
>1xu2_R Tumor necrosis factor receptor superfamily member; TNFSF, cytokine, CRD, jelly-roll, cysteine-rich, H growth factor receptor complex; 2.35A {Homo sapiens} SCOP: g.24.1.2 PDB: 2kn1_A* 1oqd_K
Probab=43.32 E-value=8.2 Score=20.34 Aligned_cols=17 Identities=24% Similarity=0.587 Sum_probs=14.3
Q ss_pred ecCCCCCeeecCCCccC
Q psy6352 36 QPCEPGLAYDDRVHKCN 52 (136)
Q Consensus 36 ~~Cp~gl~Fd~~~~~C~ 52 (136)
.+||...+||.-.+.|.
T Consensus 2 ~~C~~eqYwD~LL~~C~ 18 (47)
T 1xu2_R 2 GQCSQNEYFDSLLHACI 18 (47)
T ss_dssp --CCTTEEEETTTTEEE
T ss_pred CCCcHHHHHHHHHhccc
Confidence 57999999999999998
No 8
>2p3f_N Anti-coagulant protein 5; factor XA, hydrolase; 3.10A {Ancylostoma caninum}
Probab=43.29 E-value=6 Score=23.07 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=16.8
Q ss_pred eeCCCCCceeccCCCCCCCCCC
Q psy6352 111 ISCGDGKLFDEASLTCLGPEDY 132 (136)
Q Consensus 111 ~~Cp~g~~F~~~~~~C~~~~~V 132 (136)
=.|+.|+|.|...+.|+.++.-
T Consensus 49 C~C~~G~vr~~~~g~CV~~~~C 70 (78)
T 2p3f_N 49 CVCKDGFYRDTVIGDCVREEEC 70 (78)
T ss_dssp EEECSSCEEETTTTEEECGGGC
T ss_pred cCcCCCEeEcCCCCceECHHHC
Confidence 3688899998776888877643
No 9
>1iyc_A Scarabaecin; antifungal peptide, antimicrobial peptide, beetle, chitin-binding, antifungal protein; NMR {Synthetic} SCOP: g.31.1.2
Probab=41.05 E-value=11 Score=17.97 Aligned_cols=11 Identities=27% Similarity=0.791 Sum_probs=8.9
Q ss_pred eeCCCCCceec
Q psy6352 111 ISCGDGKLFDE 121 (136)
Q Consensus 111 ~~Cp~g~~F~~ 121 (136)
..||.|.+||-
T Consensus 16 sncpkgkvwng 26 (36)
T 1iyc_A 16 SNCPKGKVWNG 26 (36)
T ss_dssp SCCCSSCEEET
T ss_pred cCCCCcceecC
Confidence 46899999984
No 10
>2oqj_C Peptide 2G12.1 (ACPPSHVLDMRSGTCLAAEGK); immunoglobulin fold, immune system; 2.80A {Homo sapiens}
Probab=36.73 E-value=15 Score=16.28 Aligned_cols=18 Identities=28% Similarity=0.497 Sum_probs=14.6
Q ss_pred cCCCCCeeecCCCccCCC
Q psy6352 37 PCEPGLAYDDRVHKCNWP 54 (136)
Q Consensus 37 ~Cp~gl~Fd~~~~~C~~~ 54 (136)
.||+..+.|..++.|.-.
T Consensus 1 acppshvldmrsgtclaa 18 (26)
T 2oqj_C 1 ACPPSHVLDMRSGTCLAA 18 (26)
T ss_pred CcCchheeeccCCceEee
Confidence 388899999999988744
No 11
>2b5b_A Defensin; antibiotic; NMR {Caretta caretta}
Probab=31.25 E-value=11 Score=17.94 Aligned_cols=13 Identities=31% Similarity=0.641 Sum_probs=10.2
Q ss_pred CCcCCCccEEcCC
Q psy6352 93 VPGDRERLITCVD 105 (136)
Q Consensus 93 ~~~~C~~y~~C~~ 105 (136)
.|.+|.+|+-|+.
T Consensus 20 lpyncgkyiccvp 32 (36)
T 2b5b_A 20 LPYNCGKYICCVP 32 (36)
T ss_dssp CSSSBCCSSCSSS
T ss_pred cCccCCceEEeEE
Confidence 3569999998874
No 12
>3urf_Z Tumor necrosis factor receptor superfamily member; cystein-rich domain, beta-sandwich, cytokine; HET: NAG; 2.70A {Homo sapiens} PDB: 4e4d_R
Probab=26.21 E-value=21 Score=23.94 Aligned_cols=32 Identities=31% Similarity=0.518 Sum_probs=16.9
Q ss_pred CCCCCCCCCCCccccCCCCCCcceEEcCCCcee
Q psy6352 2 PFNNPPCEFKYGIYAESSACSTNYIKCEEGYPY 34 (136)
Q Consensus 2 ~~~~~~C~~~~g~~~~p~~C~~~y~~C~~g~~~ 34 (136)
+.++.+|.=+.|+|-....|. ..-.|..|..+
T Consensus 78 ~tsdtvC~C~~G~~~~~~~C~-~ct~C~~G~~v 109 (171)
T 3urf_Z 78 RTHNRVCECKEGRYLEIEFCL-KHRSCPPGFGV 109 (171)
T ss_dssp SSSCCEEEECTTEEEETTEEE-ECCCBCTTEEE
T ss_pred CCCCccccCCCCcEECCccCc-ccCcCCCCceE
Confidence 344455544556665544565 45556666433
No 13
>2h9e_C Anti-coagulant protein C2; factor XA, NAPC2, hydrolase-hydrolase inhibitor C blood clotting; HET: DTY; 2.20A {Ancylostoma caninum} SCOP: g.22.1.1 PDB: 1cou_A
Probab=24.85 E-value=13 Score=21.93 Aligned_cols=19 Identities=21% Similarity=0.510 Sum_probs=14.1
Q ss_pred eeCCCCCceeccCCCCCCCC
Q psy6352 111 ISCGDGKLFDEASLTCLGPE 130 (136)
Q Consensus 111 ~~Cp~g~~F~~~~~~C~~~~ 130 (136)
=.|+.|+|+|. .+.|+.++
T Consensus 50 C~C~~G~vr~~-~g~CV~~~ 68 (84)
T 2h9e_C 50 CVCEEGFYRNK-DDKCVSAE 68 (84)
T ss_dssp CEECSSCEECT-TCCEECHH
T ss_pred CCCCCCeEEcC-CCCEECHH
Confidence 36899999986 47887654
No 14
>1hx2_A BSTI; beta-sheet disulfide-rich, hydrolase inhibitor; NMR {Bombina bombina} SCOP: g.22.1.2
Probab=23.96 E-value=27 Score=18.80 Aligned_cols=20 Identities=25% Similarity=0.622 Sum_probs=12.3
Q ss_pred eeCCCCCceecc-CCCCCCCC
Q psy6352 111 ISCGDGKLFDEA-SLTCLGPE 130 (136)
Q Consensus 111 ~~Cp~g~~F~~~-~~~C~~~~ 130 (136)
=.|+.|++|-.. .+.|+.++
T Consensus 38 C~C~~Gtv~v~~~~~~CV~~~ 58 (60)
T 1hx2_A 38 CGCISGTVLKSKDSSECVHPS 58 (60)
T ss_dssp EEECTTCEESSTTCSSEECTT
T ss_pred CCCCCCCeeEECCCCCEechh
Confidence 359999433333 57887654
No 15
>2jye_A Granulin A; epithelin, human, stack of hairpins, alternative splicing, cytokine, glycoprotein, polymorphism, secreted; NMR {Homo sapiens}
Probab=21.23 E-value=46 Score=19.13 Aligned_cols=21 Identities=24% Similarity=0.245 Sum_probs=16.9
Q ss_pred eeCCCCCceeccCCCCCCCCC
Q psy6352 111 ISCGDGKLFDEASLTCLGPED 131 (136)
Q Consensus 111 ~~Cp~g~~F~~~~~~C~~~~~ 131 (136)
.=||.|++=|.+.++|....+
T Consensus 42 hCCP~gy~Cd~~~g~C~~~~~ 62 (72)
T 2jye_A 42 HCCPAGFTCDTQKGTCEQKLA 62 (72)
T ss_dssp CSSCSSCCEETTTTEECSSSC
T ss_pred ccCCCCCeeCCCCCeEeCCCC
Confidence 448999999999999987654
Done!