RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy6352
         (136 letters)



>gnl|CDD|216601 pfam01607, CBM_14, Chitin binding Peritrophin-A domain.  This
          domain is called the Peritrophin-A domain and is found
          in chitin binding proteins particularly peritrophic
          matrix proteins of insects and animal chitinases.
          Copies of the domain are also found in some
          baculoviruses. Relevant references that describe
          proteins with this domain include. It is an
          extracellular domain that contains six conserved
          cysteines that probably form three disulphide bridges.
          Chitin binding has been demonstrated for a protein
          containing only two of these domains.
          Length = 53

 Score = 37.8 bits (88), Expect = 8e-05
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 11 KYGIYAESSACSTNYIKCEEGYPYLQPCEPGLAYDDRVHKCNWPDELKD 59
            G+Y +   CS  Y +C  G   +  C  GL +D  +  C++PD + D
Sbjct: 5  PDGLYPDPGDCS-KYYQCSNGKAVVFTCPAGLVFDPALGTCDYPDNVVD 52



 Score = 30.9 bits (70), Expect = 0.032
 Identities = 15/44 (34%), Positives = 23/44 (52%)

Query: 91  FPVPGDRERLITCVDGHPRLISCGDGKLFDEASLTCLGPEDYTD 134
           +P PGD  +   C +G   + +C  G +FD A  TC  P++  D
Sbjct: 9   YPDPGDCSKYYQCSNGKAVVFTCPAGLVFDPALGTCDYPDNVVD 52


>gnl|CDD|214696 smart00494, ChtBD2, Chitin-binding domain type 2. 
          Length = 49

 Score = 37.0 bits (86), Expect = 1e-04
 Identities = 11/49 (22%), Positives = 18/49 (36%)

Query: 6  PPCEFKYGIYAESSACSTNYIKCEEGYPYLQPCEPGLAYDDRVHKCNWP 54
            C  +           + Y +C  G P +  C  GL ++     C+WP
Sbjct: 1  NECPGRGDGLYPHPTDCSKYYQCSNGRPIVGSCPAGLVFNPATQTCDWP 49



 Score = 33.2 bits (76), Expect = 0.003
 Identities = 13/37 (35%), Positives = 20/37 (54%)

Query: 90  RFPVPGDRERLITCVDGHPRLISCGDGKLFDEASLTC 126
            +P P D  +   C +G P + SC  G +F+ A+ TC
Sbjct: 10  LYPHPTDCSKYYQCSNGRPIVGSCPAGLVFNPATQTC 46


>gnl|CDD|117542 pfam08976, DUF1880, Domain of unknown function (DUF1880).  This
           domain is found predominantly in DJ binding protein. It
           has no known function.
          Length = 122

 Score = 27.1 bits (59), Expect = 2.2
 Identities = 11/35 (31%), Positives = 18/35 (51%)

Query: 6   PPCEFKYGIYAESSACSTNYIKCEEGYPYLQPCEP 40
           PP + + G+ ++S  C+        G P LQ C+P
Sbjct: 74  PPQDLRPGLKSQSHPCTPASTTVIPGTPPLQNCDP 108


>gnl|CDD|236884 PRK11234, nfrB, bacteriophage N4 adsorption protein B; Provisional.
          Length = 727

 Score = 27.4 bits (61), Expect = 2.9
 Identities = 11/19 (57%), Positives = 11/19 (57%), Gaps = 4/19 (21%)

Query: 114 GDGKLFDEASLTCLGPEDY 132
           GDG  FD  SLT    EDY
Sbjct: 248 GDGIAFDVQSLT----EDY 262


>gnl|CDD|173550 PTZ00357, PTZ00357, methyltransferase; Provisional.
          Length = 1072

 Score = 27.0 bits (59), Expect = 4.2
 Identities = 16/43 (37%), Positives = 18/43 (41%), Gaps = 5/43 (11%)

Query: 79  HSVAAKFWPYPRFPVPGDRERLITCVDGHPRLISCGDGKLFDE 121
               AK     R PVP   ER +     H  L+ CG G L DE
Sbjct: 680 SEFFAKHGVMQRVPVPSPDERTL-----HLVLLGCGRGPLIDE 717



 Score = 26.6 bits (58), Expect = 4.9
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 6/37 (16%)

Query: 65  EAIVGFKCPDS------VDPHSVAAKFWPYPRFPVPG 95
           E +VGF+CP +      + PH VA +  P+ R   PG
Sbjct: 410 EEVVGFECPTASALLACLAPHGVAPQEHPHYRPDAPG 446


>gnl|CDD|233831 TIGR02352, thiamin_ThiO, glycine oxidase ThiO.  This family
           consists of the homotetrameric, FAD-dependent glycine
           oxidase ThiO, from species such as Bacillus subtilis
           that use glycine in thiamine biosynthesis. In general,
           members of this family will not be found in species such
           as E. coli that instead use tyrosine and the ThiH
           protein [Biosynthesis of cofactors, prosthetic groups,
           and carriers, Thiamine].
          Length = 337

 Score = 25.8 bits (57), Expect = 9.8
 Identities = 8/27 (29%), Positives = 9/27 (33%)

Query: 82  AAKFWPYPRFPVPGDRERLITCVDGHP 108
           A +  P P  PV G   RL        
Sbjct: 193 AGELLPLPLRPVRGQPLRLEAPAVPLL 219


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.320    0.143    0.492 

Gapped
Lambda     K      H
   0.267   0.0665    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,966,073
Number of extensions: 592759
Number of successful extensions: 329
Number of sequences better than 10.0: 1
Number of HSP's gapped: 329
Number of HSP's successfully gapped: 14
Length of query: 136
Length of database: 10,937,602
Length adjustment: 87
Effective length of query: 49
Effective length of database: 7,078,804
Effective search space: 346861396
Effective search space used: 346861396
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.7 bits)