RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy6352
         (136 letters)



>1dqc_A Tachycitin; disulfide-rich, antimicrobial protein; NMR
          {Tachypleus tridentatus} SCOP: g.31.1.1
          Length = 74

 Score = 41.7 bits (98), Expect = 3e-06
 Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 2/50 (4%)

Query: 6  PPCEFKYGIYAESSACSTNYIKCEEGYPYLQPCEPGLAYDDRVHKCNWPD 55
           PC    G      +C + +  C +    L+ C  GL Y+  +  C+WP 
Sbjct: 10 SPCL-DDGPNVNLYSCCS-FYNCHKCLARLENCPKGLHYNAYLKVCDWPS 57



 Score = 29.8 bits (67), Expect = 0.069
 Identities = 8/59 (13%), Positives = 13/59 (22%), Gaps = 7/59 (11%)

Query: 68  VGFKCPDSVDPHSVAAKFWPYPRFPVPGDRERLITCVDGHPRLISCGDGKLFDEASLTC 126
           + F+C                              C     RL +C  G  ++     C
Sbjct: 2   LAFRCGRYSPCLDDG-------PNVNLYSCCSFYNCHKCLARLENCPKGLHYNAYLKVC 53


>1wb0_A Chitinase 1, chitotriosidase 1; cyclopentapeptide inhibitors,
           chitinase inhibitors, carbohyd metabolism, chitin
           degradation, chitin-binding; HET: VR0 MEA; 1.65A {Homo
           sapiens} SCOP: c.1.8.5 d.26.3.1 PDB: 1waw_A* 1guv_A
           1lg2_A 1lg1_A 1lq0_A 1hki_A* 1hkj_A* 1hkm_A* 1hkk_A*
          Length = 445

 Score = 40.5 bits (95), Expect = 6e-05
 Identities = 11/52 (21%), Positives = 18/52 (34%), Gaps = 1/52 (1%)

Query: 2   PFNNPPCEFKYGIYAESSACSTNYIKCEEGYPYLQPCEPGLAYDDRVHKCNW 53
             +        G+Y      S+ +  C  G  + Q C  GL + +    C W
Sbjct: 394 GQDTFCQGKADGLYPNPRERSS-FYSCAAGRLFQQSCPTGLVFSNSCKCCTW 444



 Score = 32.4 bits (74), Expect = 0.029
 Identities = 10/41 (24%), Positives = 15/41 (36%)

Query: 86  WPYPRFPVPGDRERLITCVDGHPRLISCGDGKLFDEASLTC 126
                +P P +R    +C  G     SC  G +F  +   C
Sbjct: 402 KADGLYPNPRERSSFYSCAAGRLFQQSCPTGLVFSNSCKCC 442


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 30.0 bits (67), Expect = 0.22
 Identities = 13/74 (17%), Positives = 22/74 (29%), Gaps = 18/74 (24%)

Query: 77  DPHSVAAKFWPYPRFPVPGDRERLITC------VDGHPRLISCGDGKLFDEAS------L 124
           D H++AAK        +    + LI        +   P      +  LF          +
Sbjct: 100 DIHALAAKLLQENDTTLV-KTKELIKNYITARIMAKRP-FDKKSNSALFRAVGEGNAQLV 157

Query: 125 TCLG----PEDYTD 134
              G     +DY +
Sbjct: 158 AIFGGQGNTDDYFE 171



 Score = 29.2 bits (65), Expect = 0.41
 Identities = 13/108 (12%), Positives = 24/108 (22%), Gaps = 36/108 (33%)

Query: 33  PYLQPCEPGLAYDDRVHKCNW-PDELK----------DIGCNSEAIVGFKCP----DSVD 77
             L P    +  D   +  ++   +++          D+   S +I            V 
Sbjct: 430 HLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVK 489

Query: 78  PHSVAAKFWPYPRFPVPGDRERLITCVDGHPRLISCGDGKLFDEASLT 125
                   W               T       ++  G G       LT
Sbjct: 490 --------WE-------------TTTQFKATHILDFGPGGASGLGVLT 516


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 25.6 bits (55), Expect = 7.7
 Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 20/53 (37%)

Query: 104 VDGHPRLIS-CG----DGK-LFD--------------EASLTCLGPEDYTDKY 136
           +  +PR +S       DG   +D              E+SL  L P +Y   +
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF 375


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.320    0.143    0.492 

Gapped
Lambda     K      H
   0.267   0.0705    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,292,894
Number of extensions: 128647
Number of successful extensions: 155
Number of sequences better than 10.0: 1
Number of HSP's gapped: 154
Number of HSP's successfully gapped: 12
Length of query: 136
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 52
Effective length of database: 4,356,429
Effective search space: 226534308
Effective search space used: 226534308
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (23.9 bits)