BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6353
(136 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|328700227|ref|XP_001951393.2| PREDICTED: ELAV-like protein 4-like isoform 1 [Acyrthosiphon pisum]
Length = 383
Score = 173 bits (438), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 86/116 (74%), Positives = 97/116 (83%), Gaps = 5/116 (4%)
Query: 7 LNKLFTYEKVHLGFS---DAEICVFLIS--TAQSLGYGFVNYHRPEDAEKAINTLNGLRL 61
L + T E++ FS + E C + T QSLGYGFVNYHRPEDAEKAINTLNGLRL
Sbjct: 43 LPQTMTQEEIRSLFSSIGEVESCKLIRDKVTGQSLGYGFVNYHRPEDAEKAINTLNGLRL 102
Query: 62 QNKTIKVSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNL 117
QNKTIKVS+ARPSSE+IKGANLYVSGLPKHM+QQ+LE+LFSPYGRIITSRILCDN+
Sbjct: 103 QNKTIKVSFARPSSEAIKGANLYVSGLPKHMTQQDLENLFSPYGRIITSRILCDNM 158
>gi|328700229|ref|XP_003241188.1| PREDICTED: ELAV-like protein 4-like isoform 2 [Acyrthosiphon pisum]
Length = 392
Score = 173 bits (438), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 86/116 (74%), Positives = 97/116 (83%), Gaps = 5/116 (4%)
Query: 7 LNKLFTYEKVHLGFS---DAEICVFLIS--TAQSLGYGFVNYHRPEDAEKAINTLNGLRL 61
L + T E++ FS + E C + T QSLGYGFVNYHRPEDAEKAINTLNGLRL
Sbjct: 43 LPQTMTQEEIRSLFSSIGEVESCKLIRDKVTGQSLGYGFVNYHRPEDAEKAINTLNGLRL 102
Query: 62 QNKTIKVSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNL 117
QNKTIKVS+ARPSSE+IKGANLYVSGLPKHM+QQ+LE+LFSPYGRIITSRILCDN+
Sbjct: 103 QNKTIKVSFARPSSEAIKGANLYVSGLPKHMTQQDLENLFSPYGRIITSRILCDNM 158
>gi|380027075|ref|XP_003697261.1| PREDICTED: ELAV-like protein 2-like [Apis florea]
Length = 362
Score = 172 bits (437), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 84/102 (82%), Positives = 90/102 (88%), Gaps = 5/102 (4%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE+IKGANLYVSGLPK+
Sbjct: 65 TGQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSEAIKGANLYVSGLPKN 124
Query: 92 MSQQELESLFSPYGRIITSRILCDNL-----ATENGKYYSGL 128
M+QQ+LE+LFSPYGRIITSRILCDN+ T G Y GL
Sbjct: 125 MTQQDLENLFSPYGRIITSRILCDNITVRQFVTGGGDYLPGL 166
>gi|345493619|ref|XP_003427110.1| PREDICTED: ELAV-like protein 3-like isoform 2 [Nasonia vitripennis]
Length = 383
Score = 172 bits (435), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 86/116 (74%), Positives = 97/116 (83%), Gaps = 5/116 (4%)
Query: 7 LNKLFTYEKVHLGFS---DAEICVFLIS--TAQSLGYGFVNYHRPEDAEKAINTLNGLRL 61
L + T E++ FS + E C + T QSLGYGFVNYHRPEDAEKAINTLNGLRL
Sbjct: 35 LPQTMTQEEIRSLFSSIGEVESCKLIRDKLTGQSLGYGFVNYHRPEDAEKAINTLNGLRL 94
Query: 62 QNKTIKVSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNL 117
QNKTIKVSYARPSSE+IKGANLYVSGLPK+M+QQ+LE+LFSPYGRIITSRILCDN+
Sbjct: 95 QNKTIKVSYARPSSEAIKGANLYVSGLPKNMTQQDLENLFSPYGRIITSRILCDNI 150
Score = 35.4 bits (80), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 31/51 (60%)
Query: 74 SSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKY 124
SS+ NL V+ LP+ M+Q+E+ SLFS G + + +++ D L ++ Y
Sbjct: 21 SSQEESKTNLIVNYLPQTMTQEEIRSLFSSIGEVESCKLIRDKLTGQSLGY 71
>gi|345493621|ref|XP_003427111.1| PREDICTED: ELAV-like protein 3-like isoform 3 [Nasonia vitripennis]
gi|345493623|ref|XP_001603257.2| PREDICTED: ELAV-like protein 3-like isoform 1 [Nasonia vitripennis]
Length = 349
Score = 171 bits (434), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 86/116 (74%), Positives = 97/116 (83%), Gaps = 5/116 (4%)
Query: 7 LNKLFTYEKVHLGFS---DAEICVFLIS--TAQSLGYGFVNYHRPEDAEKAINTLNGLRL 61
L + T E++ FS + E C + T QSLGYGFVNYHRPEDAEKAINTLNGLRL
Sbjct: 35 LPQTMTQEEIRSLFSSIGEVESCKLIRDKLTGQSLGYGFVNYHRPEDAEKAINTLNGLRL 94
Query: 62 QNKTIKVSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNL 117
QNKTIKVSYARPSSE+IKGANLYVSGLPK+M+QQ+LE+LFSPYGRIITSRILCDN+
Sbjct: 95 QNKTIKVSYARPSSEAIKGANLYVSGLPKNMTQQDLENLFSPYGRIITSRILCDNI 150
Score = 35.4 bits (80), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 31/51 (60%)
Query: 74 SSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKY 124
SS+ NL V+ LP+ M+Q+E+ SLFS G + + +++ D L ++ Y
Sbjct: 21 SSQEESKTNLIVNYLPQTMTQEEIRSLFSSIGEVESCKLIRDKLTGQSLGY 71
>gi|270014670|gb|EFA11118.1| hypothetical protein TcasGA2_TC004718 [Tribolium castaneum]
Length = 350
Score = 171 bits (434), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 80/86 (93%), Positives = 85/86 (98%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE+IKGANLYVSGLPK+
Sbjct: 79 TGQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSEAIKGANLYVSGLPKN 138
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+QQ+LESLFSPYGRIITSRILCDN+
Sbjct: 139 MTQQDLESLFSPYGRIITSRILCDNI 164
>gi|189233813|ref|XP_971256.2| PREDICTED: similar to RNA-binding protein, putative [Tribolium
castaneum]
Length = 352
Score = 171 bits (434), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 80/86 (93%), Positives = 85/86 (98%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE+IKGANLYVSGLPK+
Sbjct: 81 TGQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSEAIKGANLYVSGLPKN 140
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+QQ+LESLFSPYGRIITSRILCDN+
Sbjct: 141 MTQQDLESLFSPYGRIITSRILCDNI 166
>gi|350425139|ref|XP_003494024.1| PREDICTED: ELAV-like protein 2-like [Bombus impatiens]
Length = 371
Score = 171 bits (433), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 83/102 (81%), Positives = 90/102 (88%), Gaps = 5/102 (4%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE+IKGANLYVSGLPK+
Sbjct: 65 TGQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSEAIKGANLYVSGLPKN 124
Query: 92 MSQQELESLFSPYGRIITSRILCDNL-----ATENGKYYSGL 128
M+QQ+LE+LF+PYGRIITSRILCDN+ T G Y GL
Sbjct: 125 MTQQDLENLFNPYGRIITSRILCDNITVRQFVTGGGDYLPGL 166
>gi|340709266|ref|XP_003393232.1| PREDICTED: ELAV-like protein 2-like [Bombus terrestris]
Length = 533
Score = 171 bits (433), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 83/102 (81%), Positives = 90/102 (88%), Gaps = 5/102 (4%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE+IKGANLYVSGLPK+
Sbjct: 65 TGQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSEAIKGANLYVSGLPKN 124
Query: 92 MSQQELESLFSPYGRIITSRILCDNL-----ATENGKYYSGL 128
M+QQ+LE+LF+PYGRIITSRILCDN+ T G Y GL
Sbjct: 125 MTQQDLENLFNPYGRIITSRILCDNITVRQFVTGGGDYLPGL 166
>gi|328792242|ref|XP_394166.4| PREDICTED: ELAV-like protein 2-like [Apis mellifera]
Length = 378
Score = 170 bits (431), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 79/86 (91%), Positives = 85/86 (98%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE+IKGANLYVSGLPK+
Sbjct: 65 TGQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSEAIKGANLYVSGLPKN 124
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+QQ+LE+LFSPYGRIITSRILCDN+
Sbjct: 125 MTQQDLENLFSPYGRIITSRILCDNI 150
>gi|307168947|gb|EFN61833.1| ELAV-like protein 4 [Camponotus floridanus]
Length = 466
Score = 169 bits (427), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 84/116 (72%), Positives = 97/116 (83%), Gaps = 5/116 (4%)
Query: 7 LNKLFTYEKVHLGFS---DAEICVFLIS--TAQSLGYGFVNYHRPEDAEKAINTLNGLRL 61
L + T +++ FS + E C + + QSLGYGFVNYHRPEDAEKAINTLNGLRL
Sbjct: 35 LPQSMTQDEIRSLFSSIGEVESCKLIRDKLSGQSLGYGFVNYHRPEDAEKAINTLNGLRL 94
Query: 62 QNKTIKVSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNL 117
QNKTIKVSYARPSSE+IKGANLYVSGLPK+M+QQ+LE+LFSPYGRIITSRILCDN+
Sbjct: 95 QNKTIKVSYARPSSEAIKGANLYVSGLPKNMAQQDLENLFSPYGRIITSRILCDNI 150
>gi|332029758|gb|EGI69627.1| ELAV-like protein 2 [Acromyrmex echinatior]
Length = 359
Score = 169 bits (427), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 78/86 (90%), Positives = 85/86 (98%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
+ QSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE+IKGANLYVSGLPK+
Sbjct: 65 SGQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSEAIKGANLYVSGLPKN 124
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+QQ+LE+LFSPYGRIITSRILCDN+
Sbjct: 125 MAQQDLENLFSPYGRIITSRILCDNI 150
>gi|383865034|ref|XP_003707981.1| PREDICTED: ELAV-like protein 2-like [Megachile rotundata]
Length = 502
Score = 169 bits (427), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 83/102 (81%), Positives = 89/102 (87%), Gaps = 5/102 (4%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNYHR EDAEKAINTLNGLRLQNKTIKVSYARPSSE+IKGANLYVSGLPK+
Sbjct: 65 TGQSLGYGFVNYHRSEDAEKAINTLNGLRLQNKTIKVSYARPSSEAIKGANLYVSGLPKN 124
Query: 92 MSQQELESLFSPYGRIITSRILCDNL-----ATENGKYYSGL 128
M+QQ+LE+LFSPYGRIITSRILCDN+ T G Y GL
Sbjct: 125 MTQQDLENLFSPYGRIITSRILCDNITVRQFVTGGGDYLPGL 166
>gi|322798581|gb|EFZ20185.1| hypothetical protein SINV_01390 [Solenopsis invicta]
Length = 523
Score = 169 bits (427), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 84/116 (72%), Positives = 97/116 (83%), Gaps = 5/116 (4%)
Query: 7 LNKLFTYEKVHLGFS---DAEICVFLIS--TAQSLGYGFVNYHRPEDAEKAINTLNGLRL 61
L + T +++ FS + E C + + QSLGYGFVNYHRPEDAEKAINTLNGLRL
Sbjct: 34 LPQSMTQDEIRSLFSSIGEVESCKLIRDKLSGQSLGYGFVNYHRPEDAEKAINTLNGLRL 93
Query: 62 QNKTIKVSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNL 117
QNKTIKVSYARPSSE+IKGANLYVSGLPK+M+QQ+LE+LFSPYGRIITSRILCDN+
Sbjct: 94 QNKTIKVSYARPSSEAIKGANLYVSGLPKNMAQQDLENLFSPYGRIITSRILCDNI 149
>gi|307194503|gb|EFN76795.1| ELAV-like protein 2 [Harpegnathos saltator]
Length = 349
Score = 167 bits (422), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 77/86 (89%), Positives = 85/86 (98%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
+ QSLGYGFVNYHRPEDAEKAI+TLNGLRLQNKTIKVSYARPSSE+IKGANLYVSGLPK+
Sbjct: 64 SGQSLGYGFVNYHRPEDAEKAISTLNGLRLQNKTIKVSYARPSSEAIKGANLYVSGLPKN 123
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+QQ+LE+LFSPYGRIITSRILCDN+
Sbjct: 124 MAQQDLENLFSPYGRIITSRILCDNI 149
>gi|242005325|ref|XP_002423520.1| protein elav, putative [Pediculus humanus corporis]
gi|212506634|gb|EEB10782.1| protein elav, putative [Pediculus humanus corporis]
Length = 373
Score = 164 bits (416), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 77/83 (92%), Positives = 82/83 (98%)
Query: 35 SLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQ 94
SLGYGFVNY RPEDAEKAINTLNGLRLQNKTIKVS+ARPSSESIKGANLYVSGLPK+M+Q
Sbjct: 105 SLGYGFVNYQRPEDAEKAINTLNGLRLQNKTIKVSFARPSSESIKGANLYVSGLPKNMTQ 164
Query: 95 QELESLFSPYGRIITSRILCDNL 117
Q+LESLFSPYGRIITSRILCDN+
Sbjct: 165 QDLESLFSPYGRIITSRILCDNI 187
>gi|170061963|ref|XP_001866463.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167880034|gb|EDS43417.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 341
Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 81/117 (69%), Positives = 94/117 (80%), Gaps = 6/117 (5%)
Query: 7 LNKLFTYEKVHLGFS---DAEICVFL---ISTAQSLGYGFVNYHRPEDAEKAINTLNGLR 60
L + T E+V FS D E C + ++ QSLGYGFVNYHRPEDAEKAINT NGLR
Sbjct: 34 LPQTMTQEEVKSLFSSIGDVESCKLIRDKVTAGQSLGYGFVNYHRPEDAEKAINTFNGLR 93
Query: 61 LQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNL 117
LQNKTIKVS+ARPSS++IKGANLYVSGL K M+QQ+LE+LF PYG+IITSRILCDN+
Sbjct: 94 LQNKTIKVSFARPSSDAIKGANLYVSGLSKSMTQQDLEALFQPYGQIITSRILCDNI 150
>gi|241608253|ref|XP_002406562.1| conserved hypothetical protein [Ixodes scapularis]
gi|215502676|gb|EEC12170.1| conserved hypothetical protein [Ixodes scapularis]
Length = 270
Score = 162 bits (410), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 77/84 (91%), Positives = 81/84 (96%)
Query: 34 QSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMS 93
QSLGYGFVNY RPEDAEKAINTLNGLRLQNKTIKVSYARPSSE+IKGANLYVSGLPK M+
Sbjct: 1 QSLGYGFVNYVRPEDAEKAINTLNGLRLQNKTIKVSYARPSSEAIKGANLYVSGLPKSMT 60
Query: 94 QQELESLFSPYGRIITSRILCDNL 117
QQ+LE LFSPYGRIITSRILCDN+
Sbjct: 61 QQDLEGLFSPYGRIITSRILCDNI 84
>gi|195116106|ref|XP_002002597.1| GI11879 [Drosophila mojavensis]
gi|193913172|gb|EDW12039.1| GI11879 [Drosophila mojavensis]
Length = 724
Score = 159 bits (403), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 81/115 (70%), Positives = 92/115 (80%), Gaps = 3/115 (2%)
Query: 18 LGFSDAEICVFLIS--TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSS 75
+ F + E C + T QSLGYGFVNY + EDAEKAIN LNGLRLQNKTIKVS ARPSS
Sbjct: 145 VSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAINALNGLRLQNKTIKVSIARPSS 204
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYS-GLG 129
ESIKGANLYVSGLPK+M+Q +LESLFSPYG+IITSRILCDN+ E+ S G+G
Sbjct: 205 ESIKGANLYVSGLPKNMTQSDLESLFSPYGKIITSRILCDNITDEHAAGLSKGVG 259
>gi|198473023|ref|XP_002133161.1| GA28809 [Drosophila pseudoobscura pseudoobscura]
gi|198139264|gb|EDY70563.1| GA28809 [Drosophila pseudoobscura pseudoobscura]
Length = 692
Score = 159 bits (403), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 78/105 (74%), Positives = 87/105 (82%), Gaps = 2/105 (1%)
Query: 18 LGFSDAEICVFLIS--TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSS 75
+ F + E C + T QSLGYGFVNY + EDAEKAIN LNGLRLQNKTIKVS ARPSS
Sbjct: 140 VSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAINALNGLRLQNKTIKVSIARPSS 199
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATE 120
ESIKGANLYVSGLPK+M+Q +LESLFSPYG+IITSRILCDN+ E
Sbjct: 200 ESIKGANLYVSGLPKNMTQSDLESLFSPYGKIITSRILCDNITDE 244
>gi|347964852|ref|XP_309157.5| AGAP000965-PA [Anopheles gambiae str. PEST]
gi|333466508|gb|EAA04954.5| AGAP000965-PA [Anopheles gambiae str. PEST]
Length = 340
Score = 159 bits (402), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 81/116 (69%), Positives = 93/116 (80%), Gaps = 5/116 (4%)
Query: 7 LNKLFTYEKVHLGFS---DAEICVFLIS--TAQSLGYGFVNYHRPEDAEKAINTLNGLRL 61
L + T E+V FS D E C + T QSLGYGFVNYHRPEDAEKAINT NGLRL
Sbjct: 34 LPQTMTQEEVKSLFSSIGDVESCKLIRDKVTGQSLGYGFVNYHRPEDAEKAINTFNGLRL 93
Query: 62 QNKTIKVSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNL 117
QNKTIKVS+ARPSS++IKGANLYVSGL K M+QQ+LE+LF+ YG+IITSRILCDN+
Sbjct: 94 QNKTIKVSFARPSSDAIKGANLYVSGLSKSMTQQDLENLFNAYGQIITSRILCDNI 149
>gi|7322081|gb|AAB25519.2| RRM9 [Drosophila melanogaster]
Length = 444
Score = 159 bits (402), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 80/113 (70%), Positives = 92/113 (81%), Gaps = 5/113 (4%)
Query: 18 LGFSDAEICVFLIS--TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSS 75
+ F + E C + T QSLGYGFVNY + EDAEKAIN LNGLRLQNKTIKVS ARPSS
Sbjct: 131 VSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAINALNGLRLQNKTIKVSIARPSS 190
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGL 128
ESIKGANLYVSGLPK+M+Q +LESLFSPYG+IITSRILCDN+ G++ +GL
Sbjct: 191 ESIKGANLYVSGLPKNMTQSDLESLFSPYGKIITSRILCDNIT---GEHAAGL 240
>gi|194758473|ref|XP_001961486.1| GF14992 [Drosophila ananassae]
gi|190615183|gb|EDV30707.1| GF14992 [Drosophila ananassae]
Length = 660
Score = 159 bits (402), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 81/115 (70%), Positives = 93/115 (80%), Gaps = 3/115 (2%)
Query: 18 LGFSDAEICVFLIS--TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSS 75
+ F + E C + T QSLGYGFVNY + EDAEKAIN LNGLRLQNKTIKVS ARPSS
Sbjct: 119 VSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAINALNGLRLQNKTIKVSIARPSS 178
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYS-GLG 129
ESIKGANLYVSGLPK+M+Q +LESLFSPYG+IITSRILCDN+ E+ + S G+G
Sbjct: 179 ESIKGANLYVSGLPKNMTQSDLESLFSPYGKIITSRILCDNITDEHAQGLSKGVG 233
>gi|19549688|ref|NP_599124.1| RNA-binding protein 9, isoform B [Drosophila melanogaster]
gi|19549694|ref|NP_599127.1| RNA-binding protein 9, isoform C [Drosophila melanogaster]
gi|221330653|ref|NP_476937.3| RNA-binding protein 9, isoform I [Drosophila melanogaster]
gi|158226|gb|AAC13645.1| RNA-binding protein [Drosophila melanogaster]
gi|22945349|gb|AAF51177.2| RNA-binding protein 9, isoform B [Drosophila melanogaster]
gi|22945350|gb|AAF51178.2| RNA-binding protein 9, isoform C [Drosophila melanogaster]
gi|220901922|gb|AAF51179.4| RNA-binding protein 9, isoform I [Drosophila melanogaster]
Length = 444
Score = 159 bits (402), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 81/115 (70%), Positives = 92/115 (80%), Gaps = 3/115 (2%)
Query: 18 LGFSDAEICVFLIS--TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSS 75
+ F + E C + T QSLGYGFVNY + EDAEKAIN LNGLRLQNKTIKVS ARPSS
Sbjct: 131 VSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAINALNGLRLQNKTIKVSIARPSS 190
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYS-GLG 129
ESIKGANLYVSGLPK+M+Q +LESLFSPYG+IITSRILCDN+ E+ S G+G
Sbjct: 191 ESIKGANLYVSGLPKNMTQSDLESLFSPYGKIITSRILCDNITDEHAAGLSKGVG 245
>gi|195384832|ref|XP_002051116.1| GJ13991 [Drosophila virilis]
gi|194147573|gb|EDW63271.1| GJ13991 [Drosophila virilis]
Length = 725
Score = 159 bits (402), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 78/105 (74%), Positives = 87/105 (82%), Gaps = 2/105 (1%)
Query: 18 LGFSDAEICVFLIS--TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSS 75
+ F + E C + T QSLGYGFVNY + EDAEKAIN LNGLRLQNKTIKVS ARPSS
Sbjct: 123 VSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAINALNGLRLQNKTIKVSIARPSS 182
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATE 120
ESIKGANLYVSGLPK+M+Q +LESLFSPYG+IITSRILCDN+ E
Sbjct: 183 ESIKGANLYVSGLPKNMTQSDLESLFSPYGKIITSRILCDNITDE 227
>gi|194855197|ref|XP_001968493.1| GG24901 [Drosophila erecta]
gi|190660360|gb|EDV57552.1| GG24901 [Drosophila erecta]
Length = 446
Score = 159 bits (402), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 78/105 (74%), Positives = 87/105 (82%), Gaps = 2/105 (1%)
Query: 18 LGFSDAEICVFLIS--TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSS 75
+ F + E C + T QSLGYGFVNY + EDAEKAIN LNGLRLQNKTIKVS ARPSS
Sbjct: 133 VSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAINALNGLRLQNKTIKVSIARPSS 192
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATE 120
ESIKGANLYVSGLPK+M+Q +LESLFSPYG+IITSRILCDN+ E
Sbjct: 193 ESIKGANLYVSGLPKNMTQSDLESLFSPYGKIITSRILCDNITDE 237
>gi|195470919|ref|XP_002087754.1| GE18193 [Drosophila yakuba]
gi|194173855|gb|EDW87466.1| GE18193 [Drosophila yakuba]
Length = 446
Score = 159 bits (402), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 78/105 (74%), Positives = 87/105 (82%), Gaps = 2/105 (1%)
Query: 18 LGFSDAEICVFLIS--TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSS 75
+ F + E C + T QSLGYGFVNY + EDAEKAIN LNGLRLQNKTIKVS ARPSS
Sbjct: 133 VSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAINALNGLRLQNKTIKVSIARPSS 192
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATE 120
ESIKGANLYVSGLPK+M+Q +LESLFSPYG+IITSRILCDN+ E
Sbjct: 193 ESIKGANLYVSGLPKNMTQSDLESLFSPYGKIITSRILCDNITDE 237
>gi|124248380|gb|ABM92810.1| IP15810p [Drosophila melanogaster]
Length = 647
Score = 159 bits (402), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 78/105 (74%), Positives = 87/105 (82%), Gaps = 2/105 (1%)
Query: 18 LGFSDAEICVFLIS--TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSS 75
+ F + E C + T QSLGYGFVNY + EDAEKAIN LNGLRLQNKTIKVS ARPSS
Sbjct: 334 VSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAINALNGLRLQNKTIKVSIARPSS 393
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATE 120
ESIKGANLYVSGLPK+M+Q +LESLFSPYG+IITSRILCDN+ E
Sbjct: 394 ESIKGANLYVSGLPKNMTQSDLESLFSPYGKIITSRILCDNITDE 438
>gi|195342135|ref|XP_002037657.1| GM18380 [Drosophila sechellia]
gi|194132507|gb|EDW54075.1| GM18380 [Drosophila sechellia]
Length = 650
Score = 159 bits (401), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 78/105 (74%), Positives = 87/105 (82%), Gaps = 2/105 (1%)
Query: 18 LGFSDAEICVFLIS--TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSS 75
+ F + E C + T QSLGYGFVNY + EDAEKAIN LNGLRLQNKTIKVS ARPSS
Sbjct: 337 VSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAINALNGLRLQNKTIKVSIARPSS 396
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATE 120
ESIKGANLYVSGLPK+M+Q +LESLFSPYG+IITSRILCDN+ E
Sbjct: 397 ESIKGANLYVSGLPKNMTQSDLESLFSPYGKIITSRILCDNITDE 441
>gi|195434178|ref|XP_002065080.1| GK14865 [Drosophila willistoni]
gi|194161165|gb|EDW76066.1| GK14865 [Drosophila willistoni]
Length = 725
Score = 159 bits (401), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 78/105 (74%), Positives = 87/105 (82%), Gaps = 2/105 (1%)
Query: 18 LGFSDAEICVFLIS--TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSS 75
+ F + E C + T QSLGYGFVNY + EDAEKAIN LNGLRLQNKTIKVS ARPSS
Sbjct: 142 VSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAINALNGLRLQNKTIKVSIARPSS 201
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATE 120
ESIKGANLYVSGLPK+M+Q +LESLFSPYG+IITSRILCDN+ E
Sbjct: 202 ESIKGANLYVSGLPKNMTQSDLESLFSPYGKIITSRILCDNITDE 246
>gi|442625619|ref|NP_001259974.1| RNA-binding protein 9, isoform J [Drosophila melanogaster]
gi|440213243|gb|AGB92511.1| RNA-binding protein 9, isoform J [Drosophila melanogaster]
Length = 684
Score = 158 bits (400), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 77/102 (75%), Positives = 86/102 (84%), Gaps = 2/102 (1%)
Query: 18 LGFSDAEICVFLIS--TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSS 75
+ F + E C + T QSLGYGFVNY + EDAEKAIN LNGLRLQNKTIKVS ARPSS
Sbjct: 131 VSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAINALNGLRLQNKTIKVSIARPSS 190
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNL 117
ESIKGANLYVSGLPK+M+Q +LESLFSPYG+IITSRILCDN+
Sbjct: 191 ESIKGANLYVSGLPKNMTQSDLESLFSPYGKIITSRILCDNI 232
>gi|195161932|ref|XP_002021810.1| GL26299 [Drosophila persimilis]
gi|194103610|gb|EDW25653.1| GL26299 [Drosophila persimilis]
Length = 678
Score = 158 bits (399), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 77/102 (75%), Positives = 86/102 (84%), Gaps = 2/102 (1%)
Query: 18 LGFSDAEICVFLIS--TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSS 75
+ F + E C + T QSLGYGFVNY + EDAEKAIN LNGLRLQNKTIKVS ARPSS
Sbjct: 131 VSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAINALNGLRLQNKTIKVSIARPSS 190
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNL 117
ESIKGANLYVSGLPK+M+Q +LESLFSPYG+IITSRILCDN+
Sbjct: 191 ESIKGANLYVSGLPKNMTQSDLESLFSPYGKIITSRILCDNI 232
>gi|170028363|ref|XP_001842065.1| RNA-binding protein [Culex quinquefasciatus]
gi|167874220|gb|EDS37603.1| RNA-binding protein [Culex quinquefasciatus]
Length = 365
Score = 158 bits (399), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 85/132 (64%), Positives = 98/132 (74%), Gaps = 10/132 (7%)
Query: 7 LNKLFTYEKVHLGFS---DAEICVFLIS--TAQSLGYGFVNYHRPEDAEKAINTLNGLRL 61
L + T E++ FS + E C + T QSLGYGFVNY R EDA KAINTLNGLRL
Sbjct: 51 LPQQMTQEEIRSLFSSIGEVESCKLIRDKVTGQSLGYGFVNYQRAEDASKAINTLNGLRL 110
Query: 62 QNKTIKVSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNL---- 117
QNK IKVS+ARPSSE+IKGANLYVSGLPK+M Q +LESLFSPYGRIITSRILCDN+
Sbjct: 111 QNKQIKVSFARPSSEAIKGANLYVSGLPKNMLQSDLESLFSPYGRIITSRILCDNITARQ 170
Query: 118 -ATENGKYYSGL 128
A+ +G+ GL
Sbjct: 171 YASASGEVSPGL 182
>gi|19549690|ref|NP_599125.1| RNA-binding protein 9, isoform E [Drosophila melanogaster]
gi|19549692|ref|NP_599126.1| RNA-binding protein 9, isoform F [Drosophila melanogaster]
gi|62471589|ref|NP_001014462.1| RNA-binding protein 9, isoform G [Drosophila melanogaster]
gi|221330652|ref|NP_476936.3| RNA-binding protein 9, isoform H [Drosophila melanogaster]
gi|158227|gb|AAC13646.1| RNA-binding protein [Drosophila melanogaster]
gi|22945352|gb|AAN10402.1| RNA-binding protein 9, isoform E [Drosophila melanogaster]
gi|22945353|gb|AAN10403.1| RNA-binding protein 9, isoform F [Drosophila melanogaster]
gi|40714603|gb|AAR88559.1| GH26440p [Drosophila melanogaster]
gi|61678275|gb|AAX52651.1| RNA-binding protein 9, isoform G [Drosophila melanogaster]
gi|220901921|gb|AAN10401.3| RNA-binding protein 9, isoform H [Drosophila melanogaster]
gi|220951536|gb|ACL88311.1| Rbp9-PE [synthetic construct]
Length = 439
Score = 157 bits (398), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 77/102 (75%), Positives = 86/102 (84%), Gaps = 2/102 (1%)
Query: 18 LGFSDAEICVFLIS--TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSS 75
+ F + E C + T QSLGYGFVNY + EDAEKAIN LNGLRLQNKTIKVS ARPSS
Sbjct: 131 VSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAINALNGLRLQNKTIKVSIARPSS 190
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNL 117
ESIKGANLYVSGLPK+M+Q +LESLFSPYG+IITSRILCDN+
Sbjct: 191 ESIKGANLYVSGLPKNMTQSDLESLFSPYGKIITSRILCDNI 232
>gi|321475411|gb|EFX86374.1| hypothetical protein DAPPUDRAFT_98025 [Daphnia pulex]
Length = 335
Score = 157 bits (398), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 73/86 (84%), Positives = 81/86 (94%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNYHR EDAEKAINTLNGLRLQNKTIKVS+ARPSSE+IKGANLYVSG+PK
Sbjct: 27 TGQSLGYGFVNYHRAEDAEKAINTLNGLRLQNKTIKVSFARPSSENIKGANLYVSGIPKT 86
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M Q ELE+LF+P+GRIITSRILCD++
Sbjct: 87 MCQSELETLFAPFGRIITSRILCDSI 112
Score = 35.4 bits (80), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 30 ISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKT--IKVSYARPSSESIKGANLYVSG 87
I+ S G GF+ + +AE+AI LNG Q T I V +A S S KG +
Sbjct: 112 ITAGLSKGVGFIRFDTRGEAERAIEKLNGTVPQGATEPITVKFANNPSNSTKGLAPLAAY 171
Query: 88 LPKHMS 93
LP+ S
Sbjct: 172 LPEFSS 177
>gi|357617939|gb|EHJ71078.1| putative RNA-binding protein [Danaus plexippus]
Length = 397
Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 77/95 (81%), Positives = 83/95 (87%), Gaps = 3/95 (3%)
Query: 33 AQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHM 92
QSLGY FVNYHRPEDAEKAI TLNGLRLQNKTIKVSYARPSSE+IKGANLYVSGLPK M
Sbjct: 69 GQSLGYAFVNYHRPEDAEKAIATLNGLRLQNKTIKVSYARPSSEAIKGANLYVSGLPKTM 128
Query: 93 SQQELESLFSPYGRIITSRILCDNLATENGKYYSG 127
+Q ELE LFSPYGRIITSRILC+N G+ ++G
Sbjct: 129 TQIELERLFSPYGRIITSRILCEN---SGGRPFTG 160
>gi|195576197|ref|XP_002077963.1| GD23195 [Drosophila simulans]
gi|194189972|gb|EDX03548.1| GD23195 [Drosophila simulans]
Length = 464
Score = 156 bits (395), Expect = 3e-36, Method: Composition-based stats.
Identities = 78/107 (72%), Positives = 88/107 (82%), Gaps = 2/107 (1%)
Query: 18 LGFSDAEICVFLIS--TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSS 75
+ F + E C + T QSLGYGFVNY + EDAEKAIN LNGLRLQNKTIKVS ARPSS
Sbjct: 336 VSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAINALNGLRLQNKTIKVSIARPSS 395
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
ESIKGANLYVSGLPK+M+Q +LESLFSPYG+IITSRILCDN+ E+
Sbjct: 396 ESIKGANLYVSGLPKNMTQSDLESLFSPYGKIITSRILCDNITDEHA 442
>gi|195051457|ref|XP_001993098.1| GH13638 [Drosophila grimshawi]
gi|193900157|gb|EDV99023.1| GH13638 [Drosophila grimshawi]
Length = 726
Score = 155 bits (393), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 76/102 (74%), Positives = 86/102 (84%), Gaps = 2/102 (1%)
Query: 18 LGFSDAEICVFLIS--TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSS 75
+ F + E C + T QSLGYGFVNY + EDAEKAIN LNGLRLQNKTIKVS ARPSS
Sbjct: 134 VSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAINALNGLRLQNKTIKVSIARPSS 193
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNL 117
ESIKGANLYVSGLPK+M+Q +LESLFSP+G+IITSRILCDN+
Sbjct: 194 ESIKGANLYVSGLPKNMTQSDLESLFSPFGKIITSRILCDNI 235
>gi|157119097|ref|XP_001659335.1| RNA-binding protein, putative [Aedes aegypti]
gi|108875486|gb|EAT39711.1| AAEL008516-PA, partial [Aedes aegypti]
Length = 359
Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 76/91 (83%), Positives = 82/91 (90%), Gaps = 1/91 (1%)
Query: 28 FLIS-TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVS 86
F IS + QSLGYGFVNY R EDA KAINTLNGLRLQNK IKVS+ARPSSE+IKGANLYVS
Sbjct: 77 FQISHSGQSLGYGFVNYQRVEDASKAINTLNGLRLQNKQIKVSFARPSSEAIKGANLYVS 136
Query: 87 GLPKHMSQQELESLFSPYGRIITSRILCDNL 117
GLPK+M Q +LESLFSPYGRIITSRILCDN+
Sbjct: 137 GLPKNMLQADLESLFSPYGRIITSRILCDNI 167
Score = 35.4 bits (80), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Query: 82 NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
NL V+ LP+ M+Q+E+ SLFS G + + +++ D + TEN
Sbjct: 29 NLIVNYLPQQMTQEEIRSLFSSIGEVESCKLIRDKV-TENA 68
>gi|158298951|ref|XP_319085.4| AGAP009952-PA [Anopheles gambiae str. PEST]
gi|157014134|gb|EAA13895.5| AGAP009952-PA [Anopheles gambiae str. PEST]
Length = 363
Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 73/86 (84%), Positives = 79/86 (91%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY R EDA KAINTLNGLRLQNK IKVS+ARPSSE+IKGANLYVSGLPK+
Sbjct: 86 TGQSLGYGFVNYQRAEDASKAINTLNGLRLQNKQIKVSFARPSSEAIKGANLYVSGLPKN 145
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M Q +LE+LFSPYGRIITSRILCDN+
Sbjct: 146 MLQADLEALFSPYGRIITSRILCDNI 171
>gi|157114005|ref|XP_001657938.1| RNA-binding protein, putative [Aedes aegypti]
gi|108877490|gb|EAT41715.1| AAEL006675-PA, partial [Aedes aegypti]
Length = 359
Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 73/89 (82%), Positives = 80/89 (89%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGL 88
+ + QSLGYGFVNY R EDA KAINTLNGLRLQNK IKVS+ARPSSE+IKGANLYVSGL
Sbjct: 79 IFHSGQSLGYGFVNYQRVEDASKAINTLNGLRLQNKQIKVSFARPSSEAIKGANLYVSGL 138
Query: 89 PKHMSQQELESLFSPYGRIITSRILCDNL 117
PK+M Q +LESLFSPYGRIITSRILCDN+
Sbjct: 139 PKNMLQADLESLFSPYGRIITSRILCDNI 167
Score = 35.4 bits (80), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 28/43 (65%)
Query: 82 NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKY 124
NL V+ LP+ M+Q+E+ SLFS G + + +++ D + E+ Y
Sbjct: 29 NLIVNYLPQQMTQEEIRSLFSSIGEVESCKLIRDKVTGESLMY 71
>gi|157126547|ref|XP_001660922.1| hypothetical protein AaeL_AAEL010567 [Aedes aegypti]
gi|108873228|gb|EAT37453.1| AAEL010567-PA, partial [Aedes aegypti]
Length = 384
Score = 152 bits (385), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 70/85 (82%), Positives = 79/85 (92%)
Query: 33 AQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHM 92
QSLGYGFVNYHR EDA+KAINT NGLRLQNKTIKVS+ARPSS++IKGANLYVSGL K M
Sbjct: 109 GQSLGYGFVNYHRAEDADKAINTFNGLRLQNKTIKVSFARPSSDAIKGANLYVSGLSKSM 168
Query: 93 SQQELESLFSPYGRIITSRILCDNL 117
+QQ+LE+LF PYG+IITSRILCDN+
Sbjct: 169 TQQDLEALFQPYGQIITSRILCDNI 193
>gi|391344304|ref|XP_003746441.1| PREDICTED: ELAV-like protein 4-like [Metaseiulus occidentalis]
Length = 394
Score = 151 bits (382), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 80/116 (68%), Positives = 90/116 (77%), Gaps = 5/116 (4%)
Query: 7 LNKLFTYEKVHLGFS---DAEICVFLIS--TAQSLGYGFVNYHRPEDAEKAINTLNGLRL 61
L + T E++ FS + E C + T QSLGYGFVNY E AEKAINTLNGLRL
Sbjct: 74 LPQTMTQEEIRSLFSSIGEVESCKLIRDKVTGQSLGYGFVNYVCAEAAEKAINTLNGLRL 133
Query: 62 QNKTIKVSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNL 117
QNKTIKVSYARPSSE+IKGANLYVSGLPK M+QQ+LE LF+PYG IITSRILCDN+
Sbjct: 134 QNKTIKVSYARPSSEAIKGANLYVSGLPKSMTQQDLEQLFAPYGGIITSRILCDNI 189
>gi|357619997|gb|EHJ72347.1| hypothetical protein KGM_14614 [Danaus plexippus]
Length = 320
Score = 151 bits (381), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 70/88 (79%), Positives = 80/88 (90%)
Query: 30 ISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLP 89
I QSLGY FVNYH+PEDAEKA+NTLNGLRLQNK IKVSYARPSS++IKGANLYVSGLP
Sbjct: 33 ILNGQSLGYAFVNYHKPEDAEKAVNTLNGLRLQNKIIKVSYARPSSDAIKGANLYVSGLP 92
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNL 117
KHM+QQ+LE LFSP+G II+SRIL +N+
Sbjct: 93 KHMTQQDLEKLFSPFGTIISSRILHENM 120
>gi|194764023|ref|XP_001964131.1| GF21392 [Drosophila ananassae]
gi|190619056|gb|EDV34580.1| GF21392 [Drosophila ananassae]
Length = 353
Score = 150 bits (380), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 70/85 (82%), Positives = 79/85 (92%)
Query: 34 QSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMS 93
QSLGYGFVNY R EDAEKA+NTLNGLRLQNK IKVSYARPSSESIKGANLYVSGLPK++S
Sbjct: 80 QSLGYGFVNYVRAEDAEKAVNTLNGLRLQNKVIKVSYARPSSESIKGANLYVSGLPKNLS 139
Query: 94 QQELESLFSPYGRIITSRILCDNLA 118
Q +LE +F+ YG+IITSRILCDN++
Sbjct: 140 QPDLEGMFASYGKIITSRILCDNIS 164
>gi|195133062|ref|XP_002010958.1| GI16282 [Drosophila mojavensis]
gi|193906933|gb|EDW05800.1| GI16282 [Drosophila mojavensis]
Length = 353
Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 69/85 (81%), Positives = 79/85 (92%)
Query: 34 QSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMS 93
QSLGYGFVNY R EDAEKA+NTLNGLRLQNK IKVSYARPSSESIKGANLYVSGLPK++S
Sbjct: 80 QSLGYGFVNYVRAEDAEKAVNTLNGLRLQNKVIKVSYARPSSESIKGANLYVSGLPKNLS 139
Query: 94 QQELESLFSPYGRIITSRILCDNLA 118
Q +LE +F+ +G+IITSRILCDN++
Sbjct: 140 QPDLEGMFASFGKIITSRILCDNIS 164
>gi|386764328|ref|NP_001245647.1| found in neurons, isoform D [Drosophila melanogaster]
gi|194895737|ref|XP_001978329.1| GG17743 [Drosophila erecta]
gi|195045911|ref|XP_001992055.1| GH24423 [Drosophila grimshawi]
gi|195397025|ref|XP_002057129.1| GJ16518 [Drosophila virilis]
gi|195447330|ref|XP_002071166.1| GK25647 [Drosophila willistoni]
gi|195478085|ref|XP_002100403.1| fne [Drosophila yakuba]
gi|190649978|gb|EDV47256.1| GG17743 [Drosophila erecta]
gi|193892896|gb|EDV91762.1| GH24423 [Drosophila grimshawi]
gi|194146896|gb|EDW62615.1| GJ16518 [Drosophila virilis]
gi|194167251|gb|EDW82152.1| GK25647 [Drosophila willistoni]
gi|194187927|gb|EDX01511.1| fne [Drosophila yakuba]
gi|307344716|gb|ADN43900.1| RT06051p [Drosophila melanogaster]
gi|383293360|gb|AFH07361.1| found in neurons, isoform D [Drosophila melanogaster]
Length = 353
Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 69/85 (81%), Positives = 79/85 (92%)
Query: 34 QSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMS 93
QSLGYGFVNY R EDAEKA+NTLNGLRLQNK IKVSYARPSSESIKGANLYVSGLPK++S
Sbjct: 80 QSLGYGFVNYVRAEDAEKAVNTLNGLRLQNKVIKVSYARPSSESIKGANLYVSGLPKNLS 139
Query: 94 QQELESLFSPYGRIITSRILCDNLA 118
Q +LE +F+ +G+IITSRILCDN++
Sbjct: 140 QPDLEGMFASFGKIITSRILCDNIS 164
>gi|198467583|ref|XP_002134579.1| GA22283 [Drosophila pseudoobscura pseudoobscura]
gi|198149314|gb|EDY73206.1| GA22283 [Drosophila pseudoobscura pseudoobscura]
Length = 353
Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 69/85 (81%), Positives = 79/85 (92%)
Query: 34 QSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMS 93
QSLGYGFVNY R EDAEKA+NTLNGLRLQNK IKVSYARPSSESIKGANLYVSGLPK++S
Sbjct: 80 QSLGYGFVNYVRAEDAEKAVNTLNGLRLQNKVIKVSYARPSSESIKGANLYVSGLPKNLS 139
Query: 94 QQELESLFSPYGRIITSRILCDNLA 118
Q +LE +F+ +G+IITSRILCDN++
Sbjct: 140 QPDLEGMFASFGKIITSRILCDNIS 164
>gi|143346991|gb|ABO93208.1| Elav [Platynereis dumerilii]
Length = 361
Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 73/86 (84%), Positives = 76/86 (88%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
S+ QSLGYGFVNY RPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLY+SGLPK
Sbjct: 86 SSCQSLGYGFVNYKRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYLSGLPK 145
Query: 91 HMSQQELESLFSPYGRIITSRILCDN 116
MS+ EL SLFS G II RILCDN
Sbjct: 146 SMSEPELRSLFSSCGSIINCRILCDN 171
Score = 35.4 bits (80), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 46 PEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPYG 105
P ++T + QN S P +E K NL V+ LP+ M+Q+E+ SLFS G
Sbjct: 8 PNQEPAMMDTNSQTSQQNGGSNHSPVSPGAEDSK-TNLIVNYLPQTMTQEEIRSLFSSIG 66
Query: 106 RIITSRILCD 115
+ + +++ D
Sbjct: 67 EVESCKLIRD 76
>gi|18860091|ref|NP_572842.1| found in neurons, isoform A [Drosophila melanogaster]
gi|161077787|ref|NP_001096965.1| found in neurons, isoform B [Drosophila melanogaster]
gi|386764326|ref|NP_001245646.1| found in neurons, isoform C [Drosophila melanogaster]
gi|386764332|ref|NP_001245648.1| found in neurons, isoform E [Drosophila melanogaster]
gi|386764334|ref|NP_001245649.1| found in neurons, isoform F [Drosophila melanogaster]
gi|442616163|ref|NP_001259497.1| found in neurons, isoform G [Drosophila melanogaster]
gi|442616165|ref|NP_001259498.1| found in neurons, isoform H [Drosophila melanogaster]
gi|7230770|gb|AAF43091.1|AF239667_1 putative RNA binding protein [Drosophila melanogaster]
gi|22833123|gb|AAF48215.3| found in neurons, isoform A [Drosophila melanogaster]
gi|158031803|gb|ABW09403.1| found in neurons, isoform B [Drosophila melanogaster]
gi|289666819|gb|ADD16464.1| RT06063p1 [Drosophila melanogaster]
gi|383293359|gb|AFH07360.1| found in neurons, isoform C [Drosophila melanogaster]
gi|383293361|gb|AFH07362.1| found in neurons, isoform E [Drosophila melanogaster]
gi|383293362|gb|AFH07363.1| found in neurons, isoform F [Drosophila melanogaster]
gi|440216716|gb|AGB95339.1| found in neurons, isoform G [Drosophila melanogaster]
gi|440216717|gb|AGB95340.1| found in neurons, isoform H [Drosophila melanogaster]
Length = 356
Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 69/85 (81%), Positives = 79/85 (92%)
Query: 34 QSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMS 93
QSLGYGFVNY R EDAEKA+NTLNGLRLQNK IKVSYARPSSESIKGANLYVSGLPK++S
Sbjct: 83 QSLGYGFVNYVRAEDAEKAVNTLNGLRLQNKVIKVSYARPSSESIKGANLYVSGLPKNLS 142
Query: 94 QQELESLFSPYGRIITSRILCDNLA 118
Q +LE +F+ +G+IITSRILCDN++
Sbjct: 143 QPDLEGMFASFGKIITSRILCDNIS 167
>gi|38047677|gb|AAR09741.1| similar to Drosophila melanogaster fne, partial [Drosophila yakuba]
Length = 166
Score = 149 bits (376), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 69/85 (81%), Positives = 78/85 (91%)
Query: 33 AQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHM 92
QSLGYGFVNY R EDAEKA+NTLNGLRLQNK IKVSYARPSSESIKGANLYVSGLPK++
Sbjct: 82 GQSLGYGFVNYVRAEDAEKAVNTLNGLRLQNKVIKVSYARPSSESIKGANLYVSGLPKNL 141
Query: 93 SQQELESLFSPYGRIITSRILCDNL 117
SQ +LE +F+ +G+IITSRILCDN+
Sbjct: 142 SQPDLEGMFASFGKIITSRILCDNI 166
>gi|324512454|gb|ADY45159.1| ELAV-like protein 1 [Ascaris suum]
Length = 477
Score = 149 bits (375), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 72/86 (83%), Positives = 78/86 (90%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY R EDA KA++TLNGLRLQNKTIKVS+ARPSSESIKGANLYVSGLPK
Sbjct: 140 TGQSLGYGFVNYVRQEDALKAVSTLNGLRLQNKTIKVSFARPSSESIKGANLYVSGLPKS 199
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
MSQ ELE+LF PYG+IITSRIL DN+
Sbjct: 200 MSQPELENLFRPYGQIITSRILSDNI 225
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 27/40 (67%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY 70
+T + GYGFV + EDA AI LNG +L N+T++VS+
Sbjct: 424 ATGKCKGYGFVTMGQYEDAVTAITALNGTQLGNRTLQVSF 463
>gi|195173668|ref|XP_002027609.1| GL22975 [Drosophila persimilis]
gi|194114534|gb|EDW36577.1| GL22975 [Drosophila persimilis]
Length = 385
Score = 149 bits (375), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 69/85 (81%), Positives = 79/85 (92%)
Query: 34 QSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMS 93
QSLGYGFVNY R EDAEKA+NTLNGLRLQNK IKVSYARPSSESIKGANLYVSGLPK++S
Sbjct: 80 QSLGYGFVNYVRAEDAEKAVNTLNGLRLQNKVIKVSYARPSSESIKGANLYVSGLPKNLS 139
Query: 94 QQELESLFSPYGRIITSRILCDNLA 118
Q +LE +F+ +G+IITSRILCDN++
Sbjct: 140 QPDLEGMFASFGKIITSRILCDNIS 164
>gi|195352738|ref|XP_002042868.1| GM11591 [Drosophila sechellia]
gi|194126915|gb|EDW48958.1| GM11591 [Drosophila sechellia]
Length = 379
Score = 149 bits (375), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 69/89 (77%), Positives = 80/89 (89%)
Query: 30 ISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLP 89
+ QSLGYGFVNY R EDAEKA+NTLNGLRLQNK IKVSYARPSSESIKGANLYVSGLP
Sbjct: 102 LQQGQSLGYGFVNYVRAEDAEKAVNTLNGLRLQNKVIKVSYARPSSESIKGANLYVSGLP 161
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLA 118
K++SQ +LE +F+ +G+IITSRILCDN++
Sbjct: 162 KNLSQPDLEGMFASFGKIITSRILCDNIS 190
>gi|195566472|ref|XP_002106804.1| GD17091 [Drosophila simulans]
gi|194204196|gb|EDX17772.1| GD17091 [Drosophila simulans]
Length = 371
Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 69/85 (81%), Positives = 79/85 (92%)
Query: 34 QSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMS 93
QSLGYGFVNY R EDAEKA+NTLNGLRLQNK IKVSYARPSSESIKGANLYVSGLPK++S
Sbjct: 83 QSLGYGFVNYVRAEDAEKAVNTLNGLRLQNKVIKVSYARPSSESIKGANLYVSGLPKNLS 142
Query: 94 QQELESLFSPYGRIITSRILCDNLA 118
Q +LE +F+ +G+IITSRILCDN++
Sbjct: 143 QPDLEGMFASFGKIITSRILCDNIS 167
>gi|195439330|ref|XP_002067584.1| GK16120 [Drosophila willistoni]
gi|194163669|gb|EDW78570.1| GK16120 [Drosophila willistoni]
Length = 509
Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats.
Identities = 67/83 (80%), Positives = 77/83 (92%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
S QSLGYGFVNY RP+DAE+A+N LNGLRLQNKTIKVS+ARPSS++IKGANLYVSGLPK
Sbjct: 224 SKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDAIKGANLYVSGLPK 283
Query: 91 HMSQQELESLFSPYGRIITSRIL 113
M+QQELES+F+P+G IITSRIL
Sbjct: 284 TMTQQELESIFAPFGAIITSRIL 306
Score = 35.4 bits (80), Expect = 7.6, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY 70
+T Q GYGFV+ ++A AI LNG + N+ ++VS+
Sbjct: 464 TTNQCKGYGFVSMTNYDEAAMAIRALNGYTMGNRVLQVSF 503
>gi|156536405|gb|ABU80357.1| embryonic lethal abnormal vision [Drosophila montana]
Length = 346
Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 66/83 (79%), Positives = 77/83 (92%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
S QSLGYGFVNY RP+DAE+A+N LNGLRLQNKTIKVS+ARPSS++IKGANLYVSGLPK
Sbjct: 168 SKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDAIKGANLYVSGLPK 227
Query: 91 HMSQQELESLFSPYGRIITSRIL 113
M+QQELE++F+P+G IITSRIL
Sbjct: 228 TMTQQELEAIFAPFGAIITSRIL 250
>gi|156536403|gb|ABU80356.1| embryonic lethal abnormal vision [Drosophila littoralis]
Length = 334
Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 66/83 (79%), Positives = 77/83 (92%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
S QSLGYGFVNY RP+DAE+A+N LNGLRLQNKTIKVS+ARPSS++IKGANLYVSGLPK
Sbjct: 156 SKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDAIKGANLYVSGLPK 215
Query: 91 HMSQQELESLFSPYGRIITSRIL 113
M+QQELE++F+P+G IITSRIL
Sbjct: 216 TMTQQELEAIFAPFGAIITSRIL 238
>gi|57231478|gb|AAW47452.1| embryonic lethal abnormal vision protein [Drosophila americana]
Length = 334
Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 66/83 (79%), Positives = 77/83 (92%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
S QSLGYGFVNY RP+DAE+A+N LNGLRLQNKTIKVS+ARPSS++IKGANLYVSGLPK
Sbjct: 156 SKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDAIKGANLYVSGLPK 215
Query: 91 HMSQQELESLFSPYGRIITSRIL 113
M+QQELE++F+P+G IITSRIL
Sbjct: 216 TMTQQELEAIFAPFGAIITSRIL 238
>gi|57231504|gb|AAW47465.1| embryonic lethal abnormal vision protein [Drosophila americana]
Length = 334
Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 66/83 (79%), Positives = 77/83 (92%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
S QSLGYGFVNY RP+DAE+A+N LNGLRLQNKTIKVS+ARPSS++IKGANLYVSGLPK
Sbjct: 156 SKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDAIKGANLYVSGLPK 215
Query: 91 HMSQQELESLFSPYGRIITSRIL 113
M+QQELE++F+P+G IITSRIL
Sbjct: 216 TMTQQELEAIFAPFGAIITSRIL 238
>gi|57231496|gb|AAW47461.1| embryonic lethal abnormal vision protein [Drosophila americana]
Length = 333
Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 66/83 (79%), Positives = 77/83 (92%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
S QSLGYGFVNY RP+DAE+A+N LNGLRLQNKTIKVS+ARPSS++IKGANLYVSGLPK
Sbjct: 155 SKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDAIKGANLYVSGLPK 214
Query: 91 HMSQQELESLFSPYGRIITSRIL 113
M+QQELE++F+P+G IITSRIL
Sbjct: 215 TMTQQELEAIFAPFGAIITSRIL 237
>gi|57231470|gb|AAW47448.1| embryonic lethal abnormal vision protein [Drosophila virilis]
Length = 345
Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 66/83 (79%), Positives = 77/83 (92%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
S QSLGYGFVNY RP+DAE+A+N LNGLRLQNKTIKVS+ARPSS++IKGANLYVSGLPK
Sbjct: 167 SKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDAIKGANLYVSGLPK 226
Query: 91 HMSQQELESLFSPYGRIITSRIL 113
M+QQELE++F+P+G IITSRIL
Sbjct: 227 TMTQQELEAIFAPFGAIITSRIL 249
>gi|57231538|gb|AAW47482.1| embryonic lethal abnormal vision protein [Drosophila americana]
Length = 340
Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 66/83 (79%), Positives = 77/83 (92%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
S QSLGYGFVNY RP+DAE+A+N LNGLRLQNKTIKVS+ARPSS++IKGANLYVSGLPK
Sbjct: 162 SKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDAIKGANLYVSGLPK 221
Query: 91 HMSQQELESLFSPYGRIITSRIL 113
M+QQELE++F+P+G IITSRIL
Sbjct: 222 TMTQQELEAIFAPFGAIITSRIL 244
>gi|57231546|gb|AAW47486.1| embryonic lethal abnormal vision protein [Drosophila americana]
Length = 326
Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 66/83 (79%), Positives = 77/83 (92%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
S QSLGYGFVNY RP+DAE+A+N LNGLRLQNKTIKVS+ARPSS++IKGANLYVSGLPK
Sbjct: 148 SKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDAIKGANLYVSGLPK 207
Query: 91 HMSQQELESLFSPYGRIITSRIL 113
M+QQELE++F+P+G IITSRIL
Sbjct: 208 TMTQQELEAIFAPFGAIITSRIL 230
>gi|57231572|gb|AAW47499.1| embryonic lethal abnormal vision protein [Drosophila ezoana]
Length = 343
Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 66/83 (79%), Positives = 77/83 (92%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
S QSLGYGFVNY RP+DAE+A+N LNGLRLQNKTIKVS+ARPSS++IKGANLYVSGLPK
Sbjct: 165 SKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDAIKGANLYVSGLPK 224
Query: 91 HMSQQELESLFSPYGRIITSRIL 113
M+QQELE++F+P+G IITSRIL
Sbjct: 225 TMTQQELEAIFAPFGAIITSRIL 247
>gi|57231474|gb|AAW47450.1| embryonic lethal abnormal vision protein [Drosophila americana]
gi|57231476|gb|AAW47451.1| embryonic lethal abnormal vision protein [Drosophila americana]
gi|57231480|gb|AAW47453.1| embryonic lethal abnormal vision protein [Drosophila americana]
gi|57231484|gb|AAW47455.1| embryonic lethal abnormal vision protein [Drosophila americana]
gi|57231486|gb|AAW47456.1| embryonic lethal abnormal vision protein [Drosophila americana]
gi|57231488|gb|AAW47457.1| embryonic lethal abnormal vision protein [Drosophila americana]
gi|57231490|gb|AAW47458.1| embryonic lethal abnormal vision protein [Drosophila americana]
gi|57231492|gb|AAW47459.1| embryonic lethal abnormal vision protein [Drosophila americana]
gi|57231494|gb|AAW47460.1| embryonic lethal abnormal vision protein [Drosophila americana]
gi|57231498|gb|AAW47462.1| embryonic lethal abnormal vision protein [Drosophila americana]
gi|57231500|gb|AAW47463.1| embryonic lethal abnormal vision protein [Drosophila americana]
gi|57231502|gb|AAW47464.1| embryonic lethal abnormal vision protein [Drosophila americana]
gi|57231506|gb|AAW47466.1| embryonic lethal abnormal vision protein [Drosophila americana]
gi|57231508|gb|AAW47467.1| embryonic lethal abnormal vision protein [Drosophila americana]
gi|57231510|gb|AAW47468.1| embryonic lethal abnormal vision protein [Drosophila americana]
gi|57231514|gb|AAW47470.1| embryonic lethal abnormal vision protein [Drosophila americana]
gi|57231516|gb|AAW47471.1| embryonic lethal abnormal vision protein [Drosophila americana]
gi|57231518|gb|AAW47472.1| embryonic lethal abnormal vision protein [Drosophila americana]
gi|57231520|gb|AAW47473.1| embryonic lethal abnormal vision protein [Drosophila americana]
gi|57231522|gb|AAW47474.1| embryonic lethal abnormal vision protein [Drosophila americana]
gi|57231524|gb|AAW47475.1| embryonic lethal abnormal vision protein [Drosophila americana]
gi|57231526|gb|AAW47476.1| embryonic lethal abnormal vision protein [Drosophila americana]
gi|57231530|gb|AAW47478.1| embryonic lethal abnormal vision protein [Drosophila americana]
gi|57231532|gb|AAW47479.1| embryonic lethal abnormal vision protein [Drosophila americana]
gi|57231534|gb|AAW47480.1| embryonic lethal abnormal vision protein [Drosophila americana]
gi|57231540|gb|AAW47483.1| embryonic lethal abnormal vision protein [Drosophila americana]
gi|57231542|gb|AAW47484.1| embryonic lethal abnormal vision protein [Drosophila americana]
gi|57231544|gb|AAW47485.1| embryonic lethal abnormal vision protein [Drosophila americana]
gi|57231548|gb|AAW47487.1| embryonic lethal abnormal vision protein [Drosophila americana]
gi|57231550|gb|AAW47488.1| embryonic lethal abnormal vision protein [Drosophila americana]
gi|57231552|gb|AAW47489.1| embryonic lethal abnormal vision protein [Drosophila americana]
gi|57231554|gb|AAW47490.1| embryonic lethal abnormal vision protein [Drosophila americana]
gi|57231556|gb|AAW47491.1| embryonic lethal abnormal vision protein [Drosophila americana]
gi|57231560|gb|AAW47493.1| embryonic lethal abnormal vision protein [Drosophila americana]
gi|57231562|gb|AAW47494.1| embryonic lethal abnormal vision protein [Drosophila americana]
gi|57231564|gb|AAW47495.1| embryonic lethal abnormal vision protein [Drosophila americana]
gi|57231568|gb|AAW47497.1| embryonic lethal abnormal vision protein [Drosophila americana]
Length = 337
Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 66/83 (79%), Positives = 77/83 (92%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
S QSLGYGFVNY RP+DAE+A+N LNGLRLQNKTIKVS+ARPSS++IKGANLYVSGLPK
Sbjct: 159 SKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDAIKGANLYVSGLPK 218
Query: 91 HMSQQELESLFSPYGRIITSRIL 113
M+QQELE++F+P+G IITSRIL
Sbjct: 219 TMTQQELEAIFAPFGAIITSRIL 241
>gi|57231472|gb|AAW47449.1| embryonic lethal abnormal vision protein [Drosophila americana]
gi|57231482|gb|AAW47454.1| embryonic lethal abnormal vision protein [Drosophila americana]
gi|57231512|gb|AAW47469.1| embryonic lethal abnormal vision protein [Drosophila americana]
gi|57231528|gb|AAW47477.1| embryonic lethal abnormal vision protein [Drosophila americana]
gi|57231536|gb|AAW47481.1| embryonic lethal abnormal vision protein [Drosophila americana]
gi|57231558|gb|AAW47492.1| embryonic lethal abnormal vision protein [Drosophila americana]
gi|57231566|gb|AAW47496.1| embryonic lethal abnormal vision protein [Drosophila americana]
gi|57231570|gb|AAW47498.1| embryonic lethal abnormal vision protein [Drosophila americana]
Length = 338
Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 66/83 (79%), Positives = 77/83 (92%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
S QSLGYGFVNY RP+DAE+A+N LNGLRLQNKTIKVS+ARPSS++IKGANLYVSGLPK
Sbjct: 160 SKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDAIKGANLYVSGLPK 219
Query: 91 HMSQQELESLFSPYGRIITSRIL 113
M+QQELE++F+P+G IITSRIL
Sbjct: 220 TMTQQELEAIFAPFGAIITSRIL 242
>gi|124388985|gb|ABN10621.1| elav [Drosophila recens]
Length = 401
Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/83 (79%), Positives = 77/83 (92%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
S QSLGYGFVNY RP+DAE+A+N LNGLRLQNKTIKVS+ARPSS++IKGANLYVSGLPK
Sbjct: 148 SKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDAIKGANLYVSGLPK 207
Query: 91 HMSQQELESLFSPYGRIITSRIL 113
M+QQELE++F+P+G IITSRIL
Sbjct: 208 TMTQQELEAIFAPFGAIITSRIL 230
>gi|124388947|gb|ABN10602.1| elav [Drosophila recens]
gi|124388971|gb|ABN10614.1| elav [Drosophila recens]
gi|124389005|gb|ABN10631.1| elav [Drosophila recens]
gi|124389007|gb|ABN10632.1| elav [Drosophila recens]
gi|124389009|gb|ABN10633.1| elav [Drosophila recens]
gi|124389011|gb|ABN10634.1| elav [Drosophila recens]
gi|124389013|gb|ABN10635.1| elav [Drosophila recens]
gi|124389015|gb|ABN10636.1| elav [Drosophila recens]
gi|124389017|gb|ABN10637.1| elav [Drosophila recens]
gi|124389019|gb|ABN10638.1| elav [Drosophila recens]
gi|124389021|gb|ABN10639.1| elav [Drosophila recens]
gi|124389023|gb|ABN10640.1| elav [Drosophila recens]
gi|124389025|gb|ABN10641.1| elav [Drosophila recens]
gi|124389027|gb|ABN10642.1| elav [Drosophila recens]
gi|124389029|gb|ABN10643.1| elav [Drosophila recens]
gi|124389031|gb|ABN10644.1| elav [Drosophila recens]
Length = 401
Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/83 (79%), Positives = 77/83 (92%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
S QSLGYGFVNY RP+DAE+A+N LNGLRLQNKTIKVS+ARPSS++IKGANLYVSGLPK
Sbjct: 148 SKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDAIKGANLYVSGLPK 207
Query: 91 HMSQQELESLFSPYGRIITSRIL 113
M+QQELE++F+P+G IITSRIL
Sbjct: 208 TMTQQELEAIFAPFGAIITSRIL 230
>gi|124388951|gb|ABN10604.1| elav [Drosophila recens]
Length = 400
Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/83 (79%), Positives = 77/83 (92%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
S QSLGYGFVNY RP+DAE+A+N LNGLRLQNKTIKVS+ARPSS++IKGANLYVSGLPK
Sbjct: 147 SKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDAIKGANLYVSGLPK 206
Query: 91 HMSQQELESLFSPYGRIITSRIL 113
M+QQELE++F+P+G IITSRIL
Sbjct: 207 TMTQQELEAIFAPFGAIITSRIL 229
>gi|124388979|gb|ABN10618.1| elav [Drosophila recens]
gi|124388981|gb|ABN10619.1| elav [Drosophila recens]
gi|124389003|gb|ABN10630.1| elav [Drosophila recens]
Length = 401
Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/83 (79%), Positives = 77/83 (92%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
S QSLGYGFVNY RP+DAE+A+N LNGLRLQNKTIKVS+ARPSS++IKGANLYVSGLPK
Sbjct: 148 SKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDAIKGANLYVSGLPK 207
Query: 91 HMSQQELESLFSPYGRIITSRIL 113
M+QQELE++F+P+G IITSRIL
Sbjct: 208 TMTQQELEAIFAPFGAIITSRIL 230
>gi|124388963|gb|ABN10610.1| elav [Drosophila recens]
Length = 400
Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/83 (79%), Positives = 77/83 (92%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
S QSLGYGFVNY RP+DAE+A+N LNGLRLQNKTIKVS+ARPSS++IKGANLYVSGLPK
Sbjct: 147 SKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDAIKGANLYVSGLPK 206
Query: 91 HMSQQELESLFSPYGRIITSRIL 113
M+QQELE++F+P+G IITSRIL
Sbjct: 207 TMTQQELEAIFAPFGAIITSRIL 229
>gi|124388957|gb|ABN10607.1| elav [Drosophila recens]
gi|124388977|gb|ABN10617.1| elav [Drosophila recens]
gi|124388991|gb|ABN10624.1| elav [Drosophila recens]
Length = 403
Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/83 (79%), Positives = 77/83 (92%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
S QSLGYGFVNY RP+DAE+A+N LNGLRLQNKTIKVS+ARPSS++IKGANLYVSGLPK
Sbjct: 150 SKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDAIKGANLYVSGLPK 209
Query: 91 HMSQQELESLFSPYGRIITSRIL 113
M+QQELE++F+P+G IITSRIL
Sbjct: 210 TMTQQELEAIFAPFGAIITSRIL 232
>gi|124388959|gb|ABN10608.1| elav [Drosophila recens]
Length = 398
Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/83 (79%), Positives = 77/83 (92%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
S QSLGYGFVNY RP+DAE+A+N LNGLRLQNKTIKVS+ARPSS++IKGANLYVSGLPK
Sbjct: 145 SKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDAIKGANLYVSGLPK 204
Query: 91 HMSQQELESLFSPYGRIITSRIL 113
M+QQELE++F+P+G IITSRIL
Sbjct: 205 TMTQQELEAIFAPFGAIITSRIL 227
>gi|124389033|gb|ABN10645.1| elav [Drosophila subquinaria]
Length = 405
Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/83 (79%), Positives = 77/83 (92%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
S QSLGYGFVNY RP+DAE+A+N LNGLRLQNKTIKVS+ARPSS++IKGANLYVSGLPK
Sbjct: 152 SKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDAIKGANLYVSGLPK 211
Query: 91 HMSQQELESLFSPYGRIITSRIL 113
M+QQELE++F+P+G IITSRIL
Sbjct: 212 TMTQQELEAIFAPFGAIITSRIL 234
>gi|124388953|gb|ABN10605.1| elav [Drosophila recens]
Length = 401
Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/83 (79%), Positives = 77/83 (92%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
S QSLGYGFVNY RP+DAE+A+N LNGLRLQNKTIKVS+ARPSS++IKGANLYVSGLPK
Sbjct: 148 SKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDAIKGANLYVSGLPK 207
Query: 91 HMSQQELESLFSPYGRIITSRIL 113
M+QQELE++F+P+G IITSRIL
Sbjct: 208 TMTQQELEAIFAPFGAIITSRIL 230
>gi|124388961|gb|ABN10609.1| elav [Drosophila recens]
Length = 400
Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/83 (79%), Positives = 77/83 (92%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
S QSLGYGFVNY RP+DAE+A+N LNGLRLQNKTIKVS+ARPSS++IKGANLYVSGLPK
Sbjct: 147 SKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDAIKGANLYVSGLPK 206
Query: 91 HMSQQELESLFSPYGRIITSRIL 113
M+QQELE++F+P+G IITSRIL
Sbjct: 207 TMTQQELEAIFAPFGAIITSRIL 229
>gi|124388983|gb|ABN10620.1| elav [Drosophila recens]
gi|124388999|gb|ABN10628.1| elav [Drosophila recens]
Length = 404
Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/83 (79%), Positives = 77/83 (92%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
S QSLGYGFVNY RP+DAE+A+N LNGLRLQNKTIKVS+ARPSS++IKGANLYVSGLPK
Sbjct: 151 SKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDAIKGANLYVSGLPK 210
Query: 91 HMSQQELESLFSPYGRIITSRIL 113
M+QQELE++F+P+G IITSRIL
Sbjct: 211 TMTQQELEAIFAPFGAIITSRIL 233
>gi|124388967|gb|ABN10612.1| elav [Drosophila recens]
gi|124388993|gb|ABN10625.1| elav [Drosophila recens]
Length = 399
Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/83 (79%), Positives = 77/83 (92%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
S QSLGYGFVNY RP+DAE+A+N LNGLRLQNKTIKVS+ARPSS++IKGANLYVSGLPK
Sbjct: 146 SKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDAIKGANLYVSGLPK 205
Query: 91 HMSQQELESLFSPYGRIITSRIL 113
M+QQELE++F+P+G IITSRIL
Sbjct: 206 TMTQQELEAIFAPFGAIITSRIL 228
>gi|124388997|gb|ABN10627.1| elav [Drosophila recens]
Length = 403
Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/83 (79%), Positives = 77/83 (92%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
S QSLGYGFVNY RP+DAE+A+N LNGLRLQNKTIKVS+ARPSS++IKGANLYVSGLPK
Sbjct: 150 SKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDAIKGANLYVSGLPK 209
Query: 91 HMSQQELESLFSPYGRIITSRIL 113
M+QQELE++F+P+G IITSRIL
Sbjct: 210 TMTQQELEAIFAPFGAIITSRIL 232
>gi|124388955|gb|ABN10606.1| elav [Drosophila recens]
gi|124388965|gb|ABN10611.1| elav [Drosophila recens]
gi|124388973|gb|ABN10615.1| elav [Drosophila recens]
Length = 397
Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/83 (79%), Positives = 77/83 (92%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
S QSLGYGFVNY RP+DAE+A+N LNGLRLQNKTIKVS+ARPSS++IKGANLYVSGLPK
Sbjct: 144 SKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDAIKGANLYVSGLPK 203
Query: 91 HMSQQELESLFSPYGRIITSRIL 113
M+QQELE++F+P+G IITSRIL
Sbjct: 204 TMTQQELEAIFAPFGAIITSRIL 226
>gi|124388987|gb|ABN10622.1| elav [Drosophila recens]
Length = 402
Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/83 (79%), Positives = 77/83 (92%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
S QSLGYGFVNY RP+DAE+A+N LNGLRLQNKTIKVS+ARPSS++IKGANLYVSGLPK
Sbjct: 149 SKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDAIKGANLYVSGLPK 208
Query: 91 HMSQQELESLFSPYGRIITSRIL 113
M+QQELE++F+P+G IITSRIL
Sbjct: 209 TMTQQELEAIFAPFGAIITSRIL 231
>gi|124388969|gb|ABN10613.1| elav [Drosophila recens]
gi|124388975|gb|ABN10616.1| elav [Drosophila recens]
gi|124388989|gb|ABN10623.1| elav [Drosophila recens]
gi|124389001|gb|ABN10629.1| elav [Drosophila recens]
Length = 402
Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/83 (79%), Positives = 77/83 (92%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
S QSLGYGFVNY RP+DAE+A+N LNGLRLQNKTIKVS+ARPSS++IKGANLYVSGLPK
Sbjct: 149 SKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDAIKGANLYVSGLPK 208
Query: 91 HMSQQELESLFSPYGRIITSRIL 113
M+QQELE++F+P+G IITSRIL
Sbjct: 209 TMTQQELEAIFAPFGAIITSRIL 231
>gi|124388949|gb|ABN10603.1| elav [Drosophila recens]
Length = 389
Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/83 (79%), Positives = 77/83 (92%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
S QSLGYGFVNY RP+DAE+A+N LNGLRLQNKTIKVS+ARPSS++IKGANLYVSGLPK
Sbjct: 136 SKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDAIKGANLYVSGLPK 195
Query: 91 HMSQQELESLFSPYGRIITSRIL 113
M+QQELE++F+P+G IITSRIL
Sbjct: 196 TMTQQELEAIFAPFGAIITSRIL 218
>gi|124388995|gb|ABN10626.1| elav [Drosophila recens]
Length = 403
Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/83 (79%), Positives = 77/83 (92%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
S QSLGYGFVNY RP+DAE+A+N LNGLRLQNKTIKVS+ARPSS++IKGANLYVSGLPK
Sbjct: 150 SKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDAIKGANLYVSGLPK 209
Query: 91 HMSQQELESLFSPYGRIITSRIL 113
M+QQELE++F+P+G IITSRIL
Sbjct: 210 TMTQQELEAIFAPFGAIITSRIL 232
>gi|13096196|pdb|1FXL|A Chain A, Crystal Structure Of Hud And Au-Rich Element Of The C-Fos
Rna
gi|13096204|pdb|1G2E|A Chain A, Crystal Structure Of Hud And Au-Rich Element Of The Tumor
Necrosis Factor Alpha Rna
Length = 167
Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 70/87 (80%), Positives = 75/87 (86%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 40 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 99
Query: 92 MSQQELESLFSPYGRIITSRILCDNLA 118
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 100 MTQKELEQLFSQYGRIITSRILVDQVT 126
>gi|347446711|ref|NP_001231530.1| ELAV-like protein 4 isoform 2 [Danio rerio]
Length = 398
Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 71/91 (78%), Positives = 76/91 (83%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 112 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 171
Query: 92 MSQQELESLFSPYGRIITSRILCDNLATENG 122
M+Q+ELE LFS YGRIITSRIL D + G
Sbjct: 172 MTQKELEQLFSQYGRIITSRILVDQVTGPTG 202
>gi|148698745|gb|EDL30692.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu
antigen D), isoform CRA_b [Mus musculus]
gi|149035669|gb|EDL90350.1| rCG50282, isoform CRA_b [Rattus norvegicus]
Length = 170
Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 70/87 (80%), Positives = 75/87 (86%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 83 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 142
Query: 92 MSQQELESLFSPYGRIITSRILCDNLA 118
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 143 MTQKELEQLFSQYGRIITSRILVDQVT 169
>gi|347446708|ref|NP_001231529.1| ELAV-like protein 4 isoform 1 [Danio rerio]
Length = 411
Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 71/91 (78%), Positives = 76/91 (83%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 125 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 184
Query: 92 MSQQELESLFSPYGRIITSRILCDNLATENG 122
M+Q+ELE LFS YGRIITSRIL D + G
Sbjct: 185 MTQKELEQLFSQYGRIITSRILVDQVTGPTG 215
>gi|347446713|ref|NP_571528.2| ELAV-like protein 4 isoform 3 [Danio rerio]
Length = 403
Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 71/91 (78%), Positives = 76/91 (83%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 117 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 176
Query: 92 MSQQELESLFSPYGRIITSRILCDNLATENG 122
M+Q+ELE LFS YGRIITSRIL D + G
Sbjct: 177 MTQKELEQLFSQYGRIITSRILVDQVTGPTG 207
>gi|402587503|gb|EJW81438.1| hypothetical protein WUBG_07656, partial [Wuchereria bancrofti]
Length = 337
Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 75/112 (66%), Positives = 87/112 (77%), Gaps = 5/112 (4%)
Query: 11 FTYEKVHLGFS---DAEICVFLIS--TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKT 65
T E+VH FS + + C + T QSLGYGFVNY R EDA KA+ +LNGLRLQNKT
Sbjct: 96 MTQEEVHALFSTLGEIDSCKLVRDKVTGQSLGYGFVNYVRQEDAYKAVTSLNGLRLQNKT 155
Query: 66 IKVSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNL 117
IKVS+ARPSSESIKGANLYVSGL K MSQ +LE+LF P+G+IITSRIL DN+
Sbjct: 156 IKVSFARPSSESIKGANLYVSGLAKTMSQLDLEALFKPFGQIITSRILSDNV 207
>gi|170591004|ref|XP_001900261.1| RNA-binding protein [Brugia malayi]
gi|158592411|gb|EDP31011.1| RNA-binding protein, putative [Brugia malayi]
Length = 417
Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 75/112 (66%), Positives = 87/112 (77%), Gaps = 5/112 (4%)
Query: 11 FTYEKVHLGFS---DAEICVFLIS--TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKT 65
T E+VH FS + + C + T QSLGYGFVNY R EDA KA+ +LNGLRLQNKT
Sbjct: 60 MTQEEVHALFSTLGEIDSCKLVRDKVTGQSLGYGFVNYVRQEDAYKAVTSLNGLRLQNKT 119
Query: 66 IKVSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNL 117
IKVS+ARPSSESIKGANLYVSGL K MSQ +LE+LF P+G+IITSRIL DN+
Sbjct: 120 IKVSFARPSSESIKGANLYVSGLAKTMSQLDLEALFKPFGQIITSRILSDNV 171
Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 31/48 (64%)
Query: 23 AEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY 70
A I + ST + GYGFV + EDA AI +LNG +L N+T++VS+
Sbjct: 358 AGIIIKDFSTGKCKGYGFVTMGQYEDAVTAITSLNGTQLGNRTLQVSF 405
>gi|149035670|gb|EDL90351.1| rCG50282, isoform CRA_c [Rattus norvegicus]
Length = 175
Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 70/87 (80%), Positives = 75/87 (86%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 88 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 147
Query: 92 MSQQELESLFSPYGRIITSRILCDNLA 118
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 148 MTQKELEQLFSQYGRIITSRILVDQVT 174
>gi|393909831|gb|EFO16801.2| RNA-binding protein [Loa loa]
Length = 414
Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 75/112 (66%), Positives = 87/112 (77%), Gaps = 5/112 (4%)
Query: 11 FTYEKVHLGFS---DAEICVFLIS--TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKT 65
T E+VH FS + + C + T QSLGYGFVNY R EDA KA+ +LNGLRLQNKT
Sbjct: 60 MTQEEVHALFSTLGEIDSCKLVRDKVTGQSLGYGFVNYIRQEDAYKAVTSLNGLRLQNKT 119
Query: 66 IKVSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNL 117
IKVS+ARPSSESIKGANLYVSGL K MSQ +LE+LF P+G+IITSRIL DN+
Sbjct: 120 IKVSFARPSSESIKGANLYVSGLAKTMSQLDLEALFKPFGQIITSRILSDNV 171
Score = 42.4 bits (98), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 28/40 (70%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY 70
ST + GYGFV + EDA AI +LNG +L N+T++VS+
Sbjct: 363 STGKCKGYGFVTMGQYEDAVTAITSLNGTQLGNRTLQVSF 402
>gi|148698744|gb|EDL30691.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu
antigen D), isoform CRA_a [Mus musculus]
gi|149035668|gb|EDL90349.1| rCG50282, isoform CRA_a [Rattus norvegicus]
Length = 173
Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 70/87 (80%), Positives = 75/87 (86%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 86 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 145
Query: 92 MSQQELESLFSPYGRIITSRILCDNLA 118
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 146 MTQKELEQLFSQYGRIITSRILVDQVT 172
>gi|198468704|ref|XP_001354795.2| GA18065 [Drosophila pseudoobscura pseudoobscura]
gi|198146532|gb|EAL31850.2| GA18065 [Drosophila pseudoobscura pseudoobscura]
Length = 496
Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats.
Identities = 66/83 (79%), Positives = 77/83 (92%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
S QSLGYGFVNY RP+DAE+A+N LNGLRLQNKTIKVS+ARPSS++IKGANLYVSGLPK
Sbjct: 211 SKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDAIKGANLYVSGLPK 270
Query: 91 HMSQQELESLFSPYGRIITSRIL 113
M+QQELE++F+P+G IITSRIL
Sbjct: 271 TMTQQELEAIFAPFGAIITSRIL 293
Score = 35.4 bits (80), Expect = 7.8, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY 70
+T Q GYGFV+ ++A AI LNG + N+ ++VS+
Sbjct: 451 TTNQCKGYGFVSMTNYDEAAMAIRALNGYTMGNRVLQVSF 490
>gi|312092240|ref|XP_003147268.1| RNA-binding protein [Loa loa]
Length = 383
Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 75/112 (66%), Positives = 87/112 (77%), Gaps = 5/112 (4%)
Query: 11 FTYEKVHLGFS---DAEICVFLIS--TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKT 65
T E+VH FS + + C + T QSLGYGFVNY R EDA KA+ +LNGLRLQNKT
Sbjct: 29 MTQEEVHALFSTLGEIDSCKLVRDKVTGQSLGYGFVNYIRQEDAYKAVTSLNGLRLQNKT 88
Query: 66 IKVSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNL 117
IKVS+ARPSSESIKGANLYVSGL K MSQ +LE+LF P+G+IITSRIL DN+
Sbjct: 89 IKVSFARPSSESIKGANLYVSGLAKTMSQLDLEALFKPFGQIITSRILSDNV 140
Score = 42.4 bits (98), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 28/40 (70%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY 70
ST + GYGFV + EDA AI +LNG +L N+T++VS+
Sbjct: 332 STGKCKGYGFVTMGQYEDAVTAITSLNGTQLGNRTLQVSF 371
>gi|348525751|ref|XP_003450385.1| PREDICTED: ELAV-like protein 2-like [Oreochromis niloticus]
Length = 440
Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 70/86 (81%), Positives = 75/86 (87%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 156 TGQSLGYGFVNYVDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 215
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 216 MTQKELEQLFSQYGRIITSRILVDQV 241
>gi|608549|gb|AAA96940.1| ribonucleoprotein [Danio rerio]
gi|68085524|gb|AAH65965.2| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu
antigen D) [Danio rerio]
Length = 367
Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 71/91 (78%), Positives = 76/91 (83%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 81 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 140
Query: 92 MSQQELESLFSPYGRIITSRILCDNLATENG 122
M+Q+ELE LFS YGRIITSRIL D + G
Sbjct: 141 MTQKELEQLFSQYGRIITSRILVDQVTGPTG 171
>gi|47219575|emb|CAG02281.1| unnamed protein product [Tetraodon nigroviridis]
Length = 351
Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 70/86 (81%), Positives = 75/86 (87%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 43 TGQSLGYGFVNYVDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 102
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 103 MTQKELEQLFSQYGRIITSRILVDQV 128
>gi|148698746|gb|EDL30693.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu
antigen D), isoform CRA_c [Mus musculus]
Length = 167
Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 70/87 (80%), Positives = 75/87 (86%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 80 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 139
Query: 92 MSQQELESLFSPYGRIITSRILCDNLA 118
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 140 MTQKELEQLFSQYGRIITSRILVDQVT 166
>gi|327263683|ref|XP_003216647.1| PREDICTED: ELAV-like protein 2-like isoform 1 [Anolis carolinensis]
Length = 397
Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 70/86 (81%), Positives = 75/86 (87%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 114 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 173
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 174 MTQKELEQLFSQYGRIITSRILVDQV 199
Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 54 NTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRIL 113
NT NG N ++E K NL V+ LP++M+Q+EL+SLF G I + +++
Sbjct: 51 NTANGPTTINNNCSSPVDSGNTEDSK-TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLV 109
Query: 114 CDNLATENGKY 124
D + ++ Y
Sbjct: 110 RDKITGQSLGY 120
>gi|296484904|tpg|DAA27019.1| TPA: ELAV-like 2-like [Bos taurus]
Length = 620
Score = 142 bits (359), Expect = 4e-32, Method: Composition-based stats.
Identities = 70/86 (81%), Positives = 75/86 (87%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 350 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 409
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 410 MTQKELEQLFSQYGRIITSRILVDQV 435
Score = 37.4 bits (85), Expect = 1.9, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 54 NTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRIL 113
NT NG N ++E K NL V+ LP++M+Q+EL+SLF G I + +++
Sbjct: 287 NTANGPTTINNNCSSPVDSGNTEDSK-TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLV 345
Query: 114 CDNLATENGKY 124
D + ++ Y
Sbjct: 346 RDKITGQSLGY 356
>gi|195165322|ref|XP_002023488.1| GL20165 [Drosophila persimilis]
gi|194105593|gb|EDW27636.1| GL20165 [Drosophila persimilis]
Length = 496
Score = 142 bits (359), Expect = 4e-32, Method: Composition-based stats.
Identities = 66/83 (79%), Positives = 77/83 (92%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
S QSLGYGFVNY RP+DAE+A+N LNGLRLQNKTIKVS+ARPSS++IKGANLYVSGLPK
Sbjct: 211 SKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDAIKGANLYVSGLPK 270
Query: 91 HMSQQELESLFSPYGRIITSRIL 113
M+QQELE++F+P+G IITSRIL
Sbjct: 271 TMTQQELEAIFAPFGAIITSRIL 293
Score = 35.4 bits (80), Expect = 8.0, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY 70
+T Q GYGFV+ ++A AI LNG + N+ ++VS+
Sbjct: 451 TTNQCKGYGFVSMTNYDEAAMAIRALNGYTMGNRVLQVSF 490
>gi|395514482|ref|XP_003761446.1| PREDICTED: ELAV-like protein 2-like isoform 1 [Sarcophilus
harrisii]
Length = 389
Score = 142 bits (359), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 70/86 (81%), Positives = 75/86 (87%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 105 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 164
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 165 MTQKELEQLFSQYGRIITSRILVDQV 190
>gi|449266192|gb|EMC77278.1| ELAV-like protein 2 [Columba livia]
Length = 388
Score = 142 bits (359), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 70/86 (81%), Positives = 75/86 (87%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 104 TGQSLGYGFVNYVDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 163
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 164 MTQKELEQLFSQYGRIITSRILVDQV 189
>gi|410907065|ref|XP_003967012.1| PREDICTED: LOW QUALITY PROTEIN: ELAV-like protein 2-like, partial
[Takifugu rubripes]
Length = 321
Score = 142 bits (358), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 70/86 (81%), Positives = 75/86 (87%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 37 TGQSLGYGFVNYVDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 96
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 97 MTQKELEQLFSQYGRIITSRILVDQV 122
>gi|291383147|ref|XP_002708097.1| PREDICTED: ELAV-like 2-like isoform 2 [Oryctolagus cuniculus]
Length = 376
Score = 142 bits (358), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 70/86 (81%), Positives = 75/86 (87%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 105 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 164
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 165 MTQKELEQLFSQYGRIITSRILVDQV 190
Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 54 NTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRIL 113
NT NG N ++E K NL V+ LP++M+Q+EL+SLF G I + +++
Sbjct: 42 NTANGPTTINNNCSSPVDSGNTEDSK-TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLV 100
Query: 114 CDNLATENGKY 124
D + ++ Y
Sbjct: 101 RDKITGQSLGY 111
>gi|363744745|ref|XP_003643117.1| PREDICTED: ELAV-like protein 2 isoform 2 [Gallus gallus]
Length = 366
Score = 142 bits (358), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 70/86 (81%), Positives = 75/86 (87%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 83 TGQSLGYGFVNYVDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 142
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 143 MTQKELEQLFSQYGRIITSRILVDQV 168
>gi|119578987|gb|EAW58583.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B), isoform CRA_b [Homo sapiens]
Length = 373
Score = 142 bits (358), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 70/86 (81%), Positives = 75/86 (87%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 90 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 149
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 150 MTQKELEQLFSQYGRIITSRILVDQV 175
Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 54 NTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRIL 113
NT NG N ++E K NL V+ LP++M+Q+EL+SLF G I + +++
Sbjct: 27 NTANGPTTINNNCSSPVDSGNTEDSK-TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLV 85
Query: 114 CDNLATENGKY 124
D + ++ Y
Sbjct: 86 RDKITGQSLGY 96
>gi|355745275|gb|EHH49900.1| hypothetical protein EGM_00635 [Macaca fascicularis]
Length = 289
Score = 142 bits (358), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 70/87 (80%), Positives = 75/87 (86%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 100 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 159
Query: 92 MSQQELESLFSPYGRIITSRILCDNLA 118
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 160 MTQKELEQLFSQYGRIITSRILVDQVT 186
>gi|221042398|dbj|BAH12876.1| unnamed protein product [Homo sapiens]
Length = 332
Score = 142 bits (358), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 70/87 (80%), Positives = 75/87 (86%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 49 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 108
Query: 92 MSQQELESLFSPYGRIITSRILCDNLA 118
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 109 MTQKELEQLFSQYGRIITSRILVDQVT 135
>gi|349732184|ref|NP_001025498.3| ELAV-like protein 2 [Xenopus (Silurana) tropicalis]
gi|288561906|sp|Q28GD4.2|ELAV2_XENTR RecName: Full=ELAV-like protein 2; AltName: Full=Protein ElrB
Length = 375
Score = 142 bits (358), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 70/86 (81%), Positives = 75/86 (87%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 104 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 163
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 164 MTQKELEQLFSQYGRIITSRILVDQV 189
>gi|432919034|ref|XP_004079712.1| PREDICTED: ELAV-like protein 2-like [Oryzias latipes]
Length = 389
Score = 142 bits (358), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 70/86 (81%), Positives = 75/86 (87%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 105 TGQSLGYGFVNYVDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 164
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 165 MTQKELEQLFSQYGRIITSRILVDQV 190
>gi|46592818|ref|NP_997568.1| ELAV-like protein 2 isoform 1 [Mus musculus]
gi|29294744|gb|AAH49125.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B) [Mus musculus]
gi|34849537|gb|AAH58393.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B) [Mus musculus]
Length = 373
Score = 142 bits (358), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 70/86 (81%), Positives = 75/86 (87%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 90 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 149
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 150 MTQKELEQLFSQYGRIITSRILVDQV 175
Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 54 NTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRIL 113
NT NG N ++E K NL V+ LP++M+Q+EL+SLF G I + +++
Sbjct: 27 NTANGPTTVNNNCSSPVDSGNTEDSK-TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLV 85
Query: 114 CDNLATENGKY 124
D + ++ Y
Sbjct: 86 RDKITGQSLGY 96
>gi|301763026|ref|XP_002916933.1| PREDICTED: ELAV-like protein 2-like [Ailuropoda melanoleuca]
Length = 427
Score = 142 bits (358), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 70/86 (81%), Positives = 75/86 (87%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 144 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 203
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 204 MTQKELEQLFSQYGRIITSRILVDQV 229
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 12/111 (10%)
Query: 25 ICVFLISTAQSLGYGFVNYHRPEDAEKAI-----------NTLNGLRLQNKTIKVSYARP 73
+C+ ++ QSLG G V + A+ NT NG N
Sbjct: 41 LCLEVVRGQQSLGLGSVGFFLNSQVIAAMETQLSNGPTCNNTANGPTTINNNCSSPVDSG 100
Query: 74 SSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKY 124
++E K NL V+ LP++M+Q+EL+SLF G I + +++ D + ++ Y
Sbjct: 101 NTEDSK-TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGY 150
>gi|348041233|ref|NP_775431.2| ELAV-like protein 2 [Rattus norvegicus]
gi|149044491|gb|EDL97750.1| rCG53485, isoform CRA_b [Rattus norvegicus]
Length = 388
Score = 142 bits (358), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 70/86 (81%), Positives = 75/86 (87%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 105 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 164
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 165 MTQKELEQLFSQYGRIITSRILVDQV 190
Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 54 NTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRIL 113
NT NG N ++E K NL V+ LP++M+Q+EL+SLF G I + +++
Sbjct: 42 NTANGPTTVNNNCSSPVDSGNTEDSK-TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLV 100
Query: 114 CDNLATENGKY 124
D + ++ Y
Sbjct: 101 RDKITGQSLGY 111
>gi|440909067|gb|ELR59018.1| ELAV-like protein 2 [Bos grunniens mutus]
Length = 388
Score = 142 bits (358), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 70/86 (81%), Positives = 75/86 (87%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 104 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 163
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 164 MTQKELEQLFSQYGRIITSRILVDQV 189
Score = 36.2 bits (82), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 54 NTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRIL 113
NT NG N ++E K NL V+ LP++M+Q+EL+SLF G I + +++
Sbjct: 41 NTANGPTTINNNCSSPVDSGNTEDSK-TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLV 99
Query: 114 CDNLATENGKY 124
D + ++ Y
Sbjct: 100 RDKITGQSLGY 110
>gi|354491615|ref|XP_003507950.1| PREDICTED: ELAV-like protein 2 isoform 3 [Cricetulus griseus]
Length = 356
Score = 142 bits (358), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 70/86 (81%), Positives = 75/86 (87%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 86 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 145
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 146 MTQKELEQLFSQYGRIITSRILVDQV 171
Score = 36.2 bits (82), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 54 NTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRIL 113
NT NG N +E K NL V+ LP++M+Q+EL+SLF G I + +++
Sbjct: 23 NTANGPTTVNNNCSSPVDSGKTEDSK-TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLV 81
Query: 114 CDNLATENGKY 124
D + ++ Y
Sbjct: 82 RDKITGQSLGY 92
>gi|608543|gb|AAA96945.1| ribonucleoprotein [Xenopus laevis]
Length = 366
Score = 142 bits (358), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 70/87 (80%), Positives = 75/87 (86%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 83 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 142
Query: 92 MSQQELESLFSPYGRIITSRILCDNLA 118
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 143 MTQKELEQLFSQYGRIITSRILVDQVT 169
>gi|119578990|gb|EAW58586.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B), isoform CRA_e [Homo sapiens]
Length = 374
Score = 142 bits (358), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 70/86 (81%), Positives = 75/86 (87%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 90 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 149
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 150 MTQKELEQLFSQYGRIITSRILVDQV 175
Score = 36.2 bits (82), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 54 NTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRIL 113
NT NG N ++E K NL V+ LP++M+Q+EL+SLF G I + +++
Sbjct: 27 NTANGPTTINNNCSSPVDSGNTEDSK-TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLV 85
Query: 114 CDNLATENGKY 124
D + ++ Y
Sbjct: 86 RDKITGQSLGY 96
>gi|207080284|ref|NP_001128867.1| DKFZP459N111 protein [Pongo abelii]
gi|390458025|ref|XP_003732040.1| PREDICTED: ELAV-like protein 2 [Callithrix jacchus]
gi|402897269|ref|XP_003911691.1| PREDICTED: ELAV-like protein 2 isoform 5 [Papio anubis]
gi|403272644|ref|XP_003928162.1| PREDICTED: ELAV-like protein 2 isoform 4 [Saimiri boliviensis
boliviensis]
gi|426361469|ref|XP_004047933.1| PREDICTED: ELAV-like protein 2 isoform 5 [Gorilla gorilla gorilla]
gi|55731642|emb|CAH92527.1| hypothetical protein [Pongo abelii]
Length = 389
Score = 142 bits (358), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 70/86 (81%), Positives = 75/86 (87%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 105 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 164
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 165 MTQKELEQLFSQYGRIITSRILVDQV 190
Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 54 NTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRIL 113
NT NG N ++E K NL V+ LP++M+Q+EL+SLF G I + +++
Sbjct: 42 NTANGPTTINNNCSSPVDSGNTEDSK-TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLV 100
Query: 114 CDNLATENGKY 124
D + ++ Y
Sbjct: 101 RDKITGQSLGY 111
>gi|18079265|ref|NP_525033.1| embryonic lethal abnormal vision, isoform A [Drosophila
melanogaster]
gi|386763527|ref|NP_001245447.1| embryonic lethal abnormal vision, isoform D [Drosophila
melanogaster]
gi|119264|sp|P16914.1|ELAV_DROME RecName: Full=Protein elav; AltName: Full=Embryonic lethal abnormal
visual protein
gi|157340|gb|AAA28506.1| elav protein [Drosophila melanogaster]
gi|4455922|emb|CAB37430.1| EG:65F1.2 [Drosophila melanogaster]
gi|15291955|gb|AAK93246.1| LD33076p [Drosophila melanogaster]
gi|22831422|gb|AAF45517.2| embryonic lethal abnormal vision, isoform A [Drosophila
melanogaster]
gi|220946076|gb|ACL85581.1| elav-PA [synthetic construct]
gi|220955740|gb|ACL90413.1| elav-PA [synthetic construct]
gi|383293116|gb|AFH07163.1| embryonic lethal abnormal vision, isoform D [Drosophila
melanogaster]
Length = 483
Score = 142 bits (358), Expect = 5e-32, Method: Composition-based stats.
Identities = 66/83 (79%), Positives = 77/83 (92%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
S QSLGYGFVNY RP+DAE+A+N LNGLRLQNKTIKVS+ARPSS++IKGANLYVSGLPK
Sbjct: 198 SKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDAIKGANLYVSGLPK 257
Query: 91 HMSQQELESLFSPYGRIITSRIL 113
M+QQELE++F+P+G IITSRIL
Sbjct: 258 TMTQQELEAIFAPFGAIITSRIL 280
Score = 35.4 bits (80), Expect = 8.6, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY 70
+T Q GYGFV+ ++A AI LNG + N+ ++VS+
Sbjct: 438 TTNQCKGYGFVSMTNYDEAAMAIRALNGYTMGNRVLQVSF 477
>gi|327263685|ref|XP_003216648.1| PREDICTED: ELAV-like protein 2-like isoform 2 [Anolis carolinensis]
Length = 390
Score = 142 bits (358), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 70/88 (79%), Positives = 76/88 (86%)
Query: 30 ISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLP 89
I+ QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLP
Sbjct: 104 ITEGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLP 163
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNL 117
K M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 164 KTMTQKELEQLFSQYGRIITSRILVDQV 191
Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 54 NTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRIL 113
NT NG N ++E K NL V+ LP++M+Q+EL+SLF G I + +++
Sbjct: 42 NTANGPTTINNNCSSPVDSGNTEDSK-TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLV 100
Query: 114 CDNL 117
D +
Sbjct: 101 RDKI 104
>gi|119578988|gb|EAW58584.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B), isoform CRA_c [Homo sapiens]
Length = 360
Score = 142 bits (358), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 70/86 (81%), Positives = 75/86 (87%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 90 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 149
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 150 MTQKELEQLFSQYGRIITSRILVDQV 175
Score = 36.2 bits (82), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 54 NTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRIL 113
NT NG N ++E K NL V+ LP++M+Q+EL+SLF G I + +++
Sbjct: 27 NTANGPTTINNNCSSPVDSGNTEDSK-TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLV 85
Query: 114 CDNLATENGKY 124
D + ++ Y
Sbjct: 86 RDKITGQSLGY 96
>gi|395514484|ref|XP_003761447.1| PREDICTED: ELAV-like protein 2-like isoform 2 [Sarcophilus
harrisii]
Length = 347
Score = 142 bits (358), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 70/86 (81%), Positives = 75/86 (87%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 76 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 135
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 136 MTQKELEQLFSQYGRIITSRILVDQV 161
>gi|390458027|ref|XP_003732041.1| PREDICTED: ELAV-like protein 2 [Callithrix jacchus]
gi|402897271|ref|XP_003911692.1| PREDICTED: ELAV-like protein 2 isoform 6 [Papio anubis]
gi|426361471|ref|XP_004047934.1| PREDICTED: ELAV-like protein 2 isoform 6 [Gorilla gorilla gorilla]
Length = 390
Score = 142 bits (358), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 70/88 (79%), Positives = 76/88 (86%)
Query: 30 ISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLP 89
I+ QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLP
Sbjct: 104 ITEGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLP 163
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNL 117
K M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 164 KTMTQKELEQLFSQYGRIITSRILVDQV 191
Score = 36.2 bits (82), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 54 NTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRIL 113
NT NG N ++E K NL V+ LP++M+Q+EL+SLF G I + +++
Sbjct: 42 NTANGPTTINNNCSSPVDSGNTEDSK-TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLV 100
Query: 114 CDNL 117
D +
Sbjct: 101 RDKI 104
>gi|281349018|gb|EFB24602.1| hypothetical protein PANDA_005072 [Ailuropoda melanoleuca]
gi|351703220|gb|EHB06139.1| ELAV-like protein 2 [Heterocephalus glaber]
gi|355567720|gb|EHH24061.1| Hu-antigen B [Macaca mulatta]
gi|355753294|gb|EHH57340.1| Hu-antigen B [Macaca fascicularis]
gi|431914785|gb|ELK15810.1| ELAV-like protein 2 [Pteropus alecto]
Length = 387
Score = 142 bits (358), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 70/86 (81%), Positives = 75/86 (87%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 104 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 163
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 164 MTQKELEQLFSQYGRIITSRILVDQV 189
Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 54 NTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRIL 113
NT NG N ++E K NL V+ LP++M+Q+EL+SLF G I + +++
Sbjct: 41 NTANGPTTINNNCSSPVDSGNTEDSK-TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLV 99
Query: 114 CDNLATENGKY 124
D + ++ Y
Sbjct: 100 RDKITGQSLGY 110
>gi|89266927|emb|CAJ82281.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B) [Xenopus (Silurana) tropicalis]
Length = 374
Score = 142 bits (358), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 70/86 (81%), Positives = 75/86 (87%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 104 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 163
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 164 MTQKELEQLFSQYGRIITSRILVDQV 189
>gi|365812510|ref|NP_001002172.2| ELAV-like protein 2 [Danio rerio]
Length = 389
Score = 142 bits (358), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 69/86 (80%), Positives = 75/86 (87%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 105 TGQSLGYGFVNYMEPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 164
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+Q+ELE LFS +GRIITSRIL D +
Sbjct: 165 MTQKELEQLFSQFGRIITSRILVDQV 190
Score = 35.0 bits (79), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%)
Query: 57 NGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
NG + T P+ NL V+ LP++M+Q+EL+SLF G I + +++ D
Sbjct: 44 NGPNSVSNTCTSPVEMPNGSEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDK 103
Query: 117 LATENGKY 124
+ ++ Y
Sbjct: 104 ITGQSLGY 111
>gi|45382273|ref|NP_990161.1| ELAV-like protein 4 [Gallus gallus]
gi|5739519|gb|AAD50508.1|AF176675_1 RNA-binding protein HuD [Gallus gallus]
Length = 371
Score = 142 bits (358), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 70/87 (80%), Positives = 75/87 (86%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 88 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 147
Query: 92 MSQQELESLFSPYGRIITSRILCDNLA 118
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 148 MTQKELEQLFSQYGRIITSRILVDQVT 174
>gi|224058156|ref|XP_002196701.1| PREDICTED: ELAV-like protein 4 [Taeniopygia guttata]
Length = 371
Score = 142 bits (358), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 70/87 (80%), Positives = 75/87 (86%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 88 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 147
Query: 92 MSQQELESLFSPYGRIITSRILCDNLA 118
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 148 MTQKELEQLFSQYGRIITSRILVDQVT 174
>gi|338721769|ref|XP_003364429.1| PREDICTED: ELAV-like protein 4 [Equus caballus]
Length = 371
Score = 142 bits (358), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 70/87 (80%), Positives = 75/87 (86%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 88 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 147
Query: 92 MSQQELESLFSPYGRIITSRILCDNLA 118
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 148 MTQKELEQLFSQYGRIITSRILVDQVT 174
>gi|213625406|gb|AAI70539.1| Xel-1 protein [Xenopus laevis]
Length = 388
Score = 142 bits (358), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 70/86 (81%), Positives = 75/86 (87%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 103 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 162
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 163 MTQKELEQLFSQYGRIITSRILVDQV 188
>gi|297664981|ref|XP_002810891.1| PREDICTED: ELAV-like protein 4 isoform 4 [Pongo abelii]
Length = 366
Score = 142 bits (358), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 70/87 (80%), Positives = 75/87 (86%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 83 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 142
Query: 92 MSQQELESLFSPYGRIITSRILCDNLA 118
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 143 MTQKELEQLFSQYGRIITSRILVDQVT 169
>gi|221316767|ref|NP_001138246.1| ELAV-like protein 4 isoform 2 [Homo sapiens]
gi|384475927|ref|NP_001245109.1| ELAV-like protein 4 [Macaca mulatta]
gi|114556464|ref|XP_001135692.1| PREDICTED: ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 isoform 11 [Pan troglodytes]
gi|332219803|ref|XP_003259047.1| PREDICTED: ELAV-like protein 4 isoform 2 [Nomascus leucogenys]
gi|395855037|ref|XP_003799978.1| PREDICTED: ELAV-like protein 4 isoform 1 [Otolemur garnettii]
gi|397518904|ref|XP_003829615.1| PREDICTED: ELAV-like protein 4 isoform 2 [Pan paniscus]
gi|402854505|ref|XP_003891908.1| PREDICTED: ELAV-like protein 4 isoform 2 [Papio anubis]
gi|426329575|ref|XP_004025814.1| PREDICTED: ELAV-like protein 4 isoform 2 [Gorilla gorilla gorilla]
gi|14280327|gb|AAK57540.1| HUD1 [Homo sapiens]
gi|380810346|gb|AFE77048.1| ELAV-like protein 4 isoform 2 [Macaca mulatta]
Length = 366
Score = 142 bits (358), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 70/87 (80%), Positives = 75/87 (86%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 83 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 142
Query: 92 MSQQELESLFSPYGRIITSRILCDNLA 118
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 143 MTQKELEQLFSQYGRIITSRILVDQVT 169
Score = 35.0 bits (79), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 35/71 (49%)
Query: 54 NTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRIL 113
NT NG N+ ++ NL V+ LP++M+Q+E SLF G I + +++
Sbjct: 19 NTSNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLV 78
Query: 114 CDNLATENGKY 124
D + ++ Y
Sbjct: 79 RDKITGQSLGY 89
>gi|119265|sp|P23241.1|ELAV_DROVI RecName: Full=Protein elav; AltName: Full=Embryonic lethal abnormal
visual protein
gi|157338|gb|AAA28505.1| ELAV [Drosophila virilis]
Length = 519
Score = 142 bits (358), Expect = 5e-32, Method: Composition-based stats.
Identities = 66/83 (79%), Positives = 77/83 (92%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
S QSLGYGFVNY RP+DAE+A+N LNGLRLQNKTIKVS+ARPSS++IKGANLYVSGLPK
Sbjct: 234 SKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDAIKGANLYVSGLPK 293
Query: 91 HMSQQELESLFSPYGRIITSRIL 113
M+QQELE++F+P+G IITSRIL
Sbjct: 294 TMTQQELEAIFAPFGAIITSRIL 316
Score = 35.4 bits (80), Expect = 8.7, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY 70
+T Q GYGFV+ ++A AI LNG + N+ ++VS+
Sbjct: 474 TTNQCKGYGFVSMTNYDEAAMAIRALNGYTMGNRVLQVSF 513
>gi|195042014|ref|XP_001991348.1| GH12602 [Drosophila grimshawi]
gi|193901106|gb|EDV99972.1| GH12602 [Drosophila grimshawi]
Length = 511
Score = 142 bits (358), Expect = 5e-32, Method: Composition-based stats.
Identities = 66/83 (79%), Positives = 77/83 (92%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
S QSLGYGFVNY RP+DAE+A+N LNGLRLQNKTIKVS+ARPSS++IKGANLYVSGLPK
Sbjct: 226 SKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDAIKGANLYVSGLPK 285
Query: 91 HMSQQELESLFSPYGRIITSRIL 113
M+QQELE++F+P+G IITSRIL
Sbjct: 286 TMTQQELEAIFAPFGAIITSRIL 308
Score = 35.4 bits (80), Expect = 8.7, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY 70
+T Q GYGFV+ ++A AI LNG + N+ ++VS+
Sbjct: 466 TTNQCKGYGFVSMTNYDEAAMAIRALNGYTMGNRVLQVSF 505
>gi|327271181|ref|XP_003220366.1| PREDICTED: ELAV-like protein 4-like [Anolis carolinensis]
Length = 410
Score = 142 bits (358), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 70/87 (80%), Positives = 75/87 (86%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 127 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 186
Query: 92 MSQQELESLFSPYGRIITSRILCDNLA 118
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 187 MTQKELEQLFSQYGRIITSRILVDQVT 213
Score = 35.4 bits (80), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 50/109 (45%), Gaps = 13/109 (11%)
Query: 17 HLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAI-NTLNGLRLQNKTIKVSYARPSS 75
H GFS ++IST + P+ + NT NG ++ ++
Sbjct: 37 HTGFSIINAVYWIISTME-----------PQVSNGPTSNTTNGPASNSRNCPSPMQTAAT 85
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKY 124
+ K NL V+ LP++M+Q+E SLF G I + +++ D + ++ Y
Sbjct: 86 DDSK-TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGY 133
>gi|126334000|ref|XP_001364864.1| PREDICTED: ELAV-like protein 2-like isoform 1 [Monodelphis
domestica]
Length = 360
Score = 142 bits (358), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 70/86 (81%), Positives = 75/86 (87%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 76 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 135
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 136 MTQKELEQLFSQYGRIITSRILVDQV 161
Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 54 NTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRIL 113
NT NG N ++E K NL V+ LP++M+Q+EL+SLF G I + +++
Sbjct: 13 NTANGPTTINNNCSSPVDSGNTEDSK-TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLV 71
Query: 114 CDNLATENGKY 124
D + ++ Y
Sbjct: 72 RDKITGQSLGY 82
>gi|363744747|ref|XP_001233484.2| PREDICTED: ELAV-like protein 2 isoform 1 [Gallus gallus]
Length = 345
Score = 142 bits (358), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 70/86 (81%), Positives = 75/86 (87%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 75 TGQSLGYGFVNYVDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 134
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 135 MTQKELEQLFSQYGRIITSRILVDQV 160
>gi|126334002|ref|XP_001364932.1| PREDICTED: ELAV-like protein 2-like isoform 2 [Monodelphis
domestica]
Length = 347
Score = 142 bits (358), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 70/86 (81%), Positives = 75/86 (87%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 76 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 135
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 136 MTQKELEQLFSQYGRIITSRILVDQV 161
Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 54 NTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRIL 113
NT NG N ++E K NL V+ LP++M+Q+EL+SLF G I + +++
Sbjct: 13 NTANGPTTINNNCSSPVDSGNTEDSK-TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLV 71
Query: 114 CDNLATENGKY 124
D + ++ Y
Sbjct: 72 RDKITGQSLGY 82
>gi|125991914|ref|NP_001075075.1| ELAV-like protein 4 [Bos taurus]
gi|73976985|ref|XP_859918.1| PREDICTED: ELAV-like protein 4 isoform 5 [Canis lupus familiaris]
gi|291398926|ref|XP_002715151.1| PREDICTED: ELAV-like 4-like isoform 2 [Oryctolagus cuniculus]
gi|301772324|ref|XP_002921582.1| PREDICTED: ELAV-like protein 4-like [Ailuropoda melanoleuca]
gi|426215482|ref|XP_004002001.1| PREDICTED: ELAV-like protein 4 isoform 1 [Ovis aries]
gi|124829171|gb|AAI33284.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu
antigen D) [Bos taurus]
gi|296489084|tpg|DAA31197.1| TPA: ELAV-like 4 [Bos taurus]
Length = 366
Score = 142 bits (357), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 70/87 (80%), Positives = 75/87 (86%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 83 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 142
Query: 92 MSQQELESLFSPYGRIITSRILCDNLA 118
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 143 MTQKELEQLFSQYGRIITSRILVDQVT 169
>gi|397521307|ref|XP_003830738.1| PREDICTED: ELAV-like protein 2 isoform 1 [Pan paniscus]
Length = 359
Score = 142 bits (357), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 70/86 (81%), Positives = 75/86 (87%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 76 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 135
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 136 MTQKELEQLFSQYGRIITSRILVDQV 161
Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 54 NTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRIL 113
NT NG N + ++E K NL V+ LP++M+Q+EL+SLF G I + +++
Sbjct: 13 NTANGPTTINNSCSSPVDSGNTEDSK-TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLV 71
Query: 114 CDNLATENGKY 124
D + ++ Y
Sbjct: 72 RDKITGQSLGY 82
>gi|326925350|ref|XP_003208879.1| PREDICTED: ELAV-like protein 4-like [Meleagris gallopavo]
Length = 379
Score = 142 bits (357), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 70/87 (80%), Positives = 75/87 (86%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 96 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 155
Query: 92 MSQQELESLFSPYGRIITSRILCDNLA 118
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 156 MTQKELEQLFSQYGRIITSRILVDQVT 182
>gi|119627249|gb|EAX06844.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu
antigen D), isoform CRA_d [Homo sapiens]
Length = 365
Score = 142 bits (357), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 70/87 (80%), Positives = 75/87 (86%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 82 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 141
Query: 92 MSQQELESLFSPYGRIITSRILCDNLA 118
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 142 MTQKELEQLFSQYGRIITSRILVDQVT 168
>gi|114556468|ref|XP_001135779.1| PREDICTED: ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 isoform 12 [Pan troglodytes]
gi|332219801|ref|XP_003259046.1| PREDICTED: ELAV-like protein 4 isoform 1 [Nomascus leucogenys]
gi|395855041|ref|XP_003799980.1| PREDICTED: ELAV-like protein 4 isoform 3 [Otolemur garnettii]
gi|397518902|ref|XP_003829614.1| PREDICTED: ELAV-like protein 4 isoform 1 [Pan paniscus]
gi|402854503|ref|XP_003891907.1| PREDICTED: ELAV-like protein 4 isoform 1 [Papio anubis]
gi|426329573|ref|XP_004025813.1| PREDICTED: ELAV-like protein 4 isoform 1 [Gorilla gorilla gorilla]
gi|221042444|dbj|BAH12899.1| unnamed protein product [Homo sapiens]
gi|261860582|dbj|BAI46813.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like protein 4
[synthetic construct]
Length = 371
Score = 142 bits (357), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 70/87 (80%), Positives = 75/87 (86%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 88 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 147
Query: 92 MSQQELESLFSPYGRIITSRILCDNLA 118
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 148 MTQKELEQLFSQYGRIITSRILVDQVT 174
Score = 35.0 bits (79), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 35/71 (49%)
Query: 54 NTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRIL 113
NT NG N+ ++ NL V+ LP++M+Q+E SLF G I + +++
Sbjct: 24 NTSNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLV 83
Query: 114 CDNLATENGKY 124
D + ++ Y
Sbjct: 84 RDKITGQSLGY 94
>gi|297664979|ref|XP_002810890.1| PREDICTED: ELAV-like protein 4 isoform 3 [Pongo abelii]
Length = 371
Score = 142 bits (357), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 70/87 (80%), Positives = 75/87 (86%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 88 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 147
Query: 92 MSQQELESLFSPYGRIITSRILCDNLA 118
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 148 MTQKELEQLFSQYGRIITSRILVDQVT 174
>gi|221316771|ref|NP_001138248.1| ELAV-like protein 4 isoform 4 [Homo sapiens]
gi|114556460|ref|XP_001135439.1| PREDICTED: ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 isoform 8 [Pan troglodytes]
gi|332219809|ref|XP_003259050.1| PREDICTED: ELAV-like protein 4 isoform 5 [Nomascus leucogenys]
gi|395855043|ref|XP_003799981.1| PREDICTED: ELAV-like protein 4 isoform 4 [Otolemur garnettii]
gi|397518910|ref|XP_003829618.1| PREDICTED: ELAV-like protein 4 isoform 5 [Pan paniscus]
gi|402854511|ref|XP_003891911.1| PREDICTED: ELAV-like protein 4 isoform 5 [Papio anubis]
gi|426329581|ref|XP_004025817.1| PREDICTED: ELAV-like protein 4 isoform 5 [Gorilla gorilla gorilla]
gi|14280323|gb|AAK57538.1| HUD3 [Homo sapiens]
Length = 366
Score = 142 bits (357), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 70/87 (80%), Positives = 75/87 (86%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 83 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 142
Query: 92 MSQQELESLFSPYGRIITSRILCDNLA 118
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 143 MTQKELEQLFSQYGRIITSRILVDQVT 169
Score = 35.0 bits (79), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 35/71 (49%)
Query: 54 NTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRIL 113
NT NG N+ ++ NL V+ LP++M+Q+E SLF G I + +++
Sbjct: 19 NTSNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLV 78
Query: 114 CDNLATENGKY 124
D + ++ Y
Sbjct: 79 RDKITGQSLGY 89
>gi|148235423|ref|NP_001081035.1| ELAV-like protein 2 [Xenopus laevis]
gi|288561905|sp|Q91903.2|ELAV2_XENLA RecName: Full=ELAV-like protein 2; AltName: Full=Elav like-1;
Short=Xel-1; AltName: Full=Protein ElrB; AltName:
Full=p45
gi|608539|gb|AAA96943.1| ribonucleoprotein [Xenopus laevis]
Length = 389
Score = 142 bits (357), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 70/88 (79%), Positives = 76/88 (86%)
Query: 30 ISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLP 89
I+ QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLP
Sbjct: 102 ITEGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLP 161
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNL 117
K M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 162 KTMTQKELEQLFSQYGRIITSRILVDQV 189
>gi|254281262|ref|NP_001156871.1| ELAV-like protein 4 isoform d [Mus musculus]
gi|73977013|ref|XP_860413.1| PREDICTED: ELAV-like protein 4 isoform 17 [Canis lupus familiaris]
gi|291398928|ref|XP_002715152.1| PREDICTED: ELAV-like 4-like isoform 3 [Oryctolagus cuniculus]
gi|354468152|ref|XP_003496531.1| PREDICTED: ELAV-like protein 4 isoform 1 [Cricetulus griseus]
gi|426215484|ref|XP_004002002.1| PREDICTED: ELAV-like protein 4 isoform 2 [Ovis aries]
Length = 371
Score = 142 bits (357), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 70/87 (80%), Positives = 75/87 (86%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 88 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 147
Query: 92 MSQQELESLFSPYGRIITSRILCDNLA 118
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 148 MTQKELEQLFSQYGRIITSRILVDQVT 174
>gi|62473376|ref|NP_001014713.1| embryonic lethal abnormal vision, isoform B [Drosophila
melanogaster]
gi|221329608|ref|NP_001138142.1| embryonic lethal abnormal vision, isoform C [Drosophila
melanogaster]
gi|2961399|emb|CAA18091.1| EG:65F1.2 [Drosophila melanogaster]
gi|61677860|gb|AAX52472.1| embryonic lethal abnormal vision, isoform B [Drosophila
melanogaster]
gi|220901638|gb|ACL82875.1| embryonic lethal abnormal vision, isoform C [Drosophila
melanogaster]
Length = 479
Score = 142 bits (357), Expect = 5e-32, Method: Composition-based stats.
Identities = 66/83 (79%), Positives = 77/83 (92%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
S QSLGYGFVNY RP+DAE+A+N LNGLRLQNKTIKVS+ARPSS++IKGANLYVSGLPK
Sbjct: 194 SKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDAIKGANLYVSGLPK 253
Query: 91 HMSQQELESLFSPYGRIITSRIL 113
M+QQELE++F+P+G IITSRIL
Sbjct: 254 TMTQQELEAIFAPFGAIITSRIL 276
Score = 35.0 bits (79), Expect = 9.0, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY 70
+T Q GYGFV+ ++A AI LNG + N+ ++VS+
Sbjct: 434 TTNQCKGYGFVSMTNYDEAAMAIRALNGYTMGNRVLQVSF 473
>gi|390465920|ref|XP_003733490.1| PREDICTED: ELAV-like protein 4 isoform 3 [Callithrix jacchus]
gi|403258119|ref|XP_003921626.1| PREDICTED: ELAV-like protein 4 isoform 2 [Saimiri boliviensis
boliviensis]
Length = 366
Score = 142 bits (357), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 70/87 (80%), Positives = 75/87 (86%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 83 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 142
Query: 92 MSQQELESLFSPYGRIITSRILCDNLA 118
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 143 MTQKELEQLFSQYGRIITSRILVDQVT 169
>gi|354491613|ref|XP_003507949.1| PREDICTED: ELAV-like protein 2 isoform 2 [Cricetulus griseus]
Length = 360
Score = 142 bits (357), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 70/86 (81%), Positives = 75/86 (87%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 76 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 135
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 136 MTQKELEQLFSQYGRIITSRILVDQV 161
Score = 36.2 bits (82), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 54 NTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRIL 113
NT NG N +E K NL V+ LP++M+Q+EL+SLF G I + +++
Sbjct: 13 NTANGPTTVNNNCSSPVDSGKTEDSK-TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLV 71
Query: 114 CDNLATENGKY 124
D + ++ Y
Sbjct: 72 RDKITGQSLGY 82
>gi|348587076|ref|XP_003479294.1| PREDICTED: ELAV-like protein 2 isoform 1 [Cavia porcellus]
Length = 360
Score = 142 bits (357), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 70/86 (81%), Positives = 75/86 (87%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 76 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 135
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 136 MTQKELEQLFSQYGRIITSRILVDQV 161
Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 54 NTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRIL 113
NT NG N ++E K NL V+ LP++M+Q+EL+SLF G I + +++
Sbjct: 13 NTTNGPTTINNNCSSPVDSGNTEDSK-TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLV 71
Query: 114 CDNLATENGKY 124
D + ++ Y
Sbjct: 72 RDKITGQSLGY 82
>gi|195469519|ref|XP_002099685.1| GE16581 [Drosophila yakuba]
gi|194187209|gb|EDX00793.1| GE16581 [Drosophila yakuba]
Length = 478
Score = 142 bits (357), Expect = 5e-32, Method: Composition-based stats.
Identities = 66/83 (79%), Positives = 77/83 (92%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
S QSLGYGFVNY RP+DAE+A+N LNGLRLQNKTIKVS+ARPSS++IKGANLYVSGLPK
Sbjct: 193 SKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDAIKGANLYVSGLPK 252
Query: 91 HMSQQELESLFSPYGRIITSRIL 113
M+QQELE++F+P+G IITSRIL
Sbjct: 253 TMTQQELEAIFAPFGAIITSRIL 275
Score = 35.0 bits (79), Expect = 9.0, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY 70
+T Q GYGFV+ ++A AI LNG + N+ ++VS+
Sbjct: 433 TTNQCKGYGFVSMTNYDEAAMAIRALNGYTMGNRVLQVSF 472
>gi|195402031|ref|XP_002059614.1| embryonic lethal, abnormal vision [Drosophila virilis]
gi|194147321|gb|EDW63036.1| embryonic lethal, abnormal vision [Drosophila virilis]
Length = 516
Score = 142 bits (357), Expect = 5e-32, Method: Composition-based stats.
Identities = 66/83 (79%), Positives = 77/83 (92%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
S QSLGYGFVNY RP+DAE+A+N LNGLRLQNKTIKVS+ARPSS++IKGANLYVSGLPK
Sbjct: 231 SKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDAIKGANLYVSGLPK 290
Query: 91 HMSQQELESLFSPYGRIITSRIL 113
M+QQELE++F+P+G IITSRIL
Sbjct: 291 TMTQQELEAIFAPFGAIITSRIL 313
Score = 35.0 bits (79), Expect = 9.0, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY 70
+T Q GYGFV+ ++A AI LNG + N+ ++VS+
Sbjct: 471 TTNQCKGYGFVSMTNYDEAAMAIRALNGYTMGNRVLQVSF 510
>gi|149693651|ref|XP_001492503.1| PREDICTED: ELAV-like protein 4 isoform 1 [Equus caballus]
Length = 366
Score = 142 bits (357), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 70/86 (81%), Positives = 75/86 (87%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 83 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 142
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 143 MTQKELEQLFSQYGRIITSRILVDQV 168
>gi|354491611|ref|XP_003507948.1| PREDICTED: ELAV-like protein 2 isoform 1 [Cricetulus griseus]
Length = 359
Score = 142 bits (357), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 70/86 (81%), Positives = 75/86 (87%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 76 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 135
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 136 MTQKELEQLFSQYGRIITSRILVDQV 161
Score = 36.2 bits (82), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 54 NTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRIL 113
NT NG N +E K NL V+ LP++M+Q+EL+SLF G I + +++
Sbjct: 13 NTANGPTTVNNNCSSPVDSGKTEDSK-TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLV 71
Query: 114 CDNLATENGKY 124
D + ++ Y
Sbjct: 72 RDKITGQSLGY 82
>gi|334321530|ref|XP_001373647.2| PREDICTED: ELAV-like protein 4 isoform 1 [Monodelphis domestica]
Length = 366
Score = 142 bits (357), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 70/87 (80%), Positives = 75/87 (86%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 83 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 142
Query: 92 MSQQELESLFSPYGRIITSRILCDNLA 118
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 143 MTQKELEQLFSQYGRIITSRILVDQVT 169
>gi|395730528|ref|XP_003775743.1| PREDICTED: ELAV-like protein 4 [Pongo abelii]
Length = 366
Score = 142 bits (357), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 70/87 (80%), Positives = 75/87 (86%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 83 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 142
Query: 92 MSQQELESLFSPYGRIITSRILCDNLA 118
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 143 MTQKELEQLFSQYGRIITSRILVDQVT 169
>gi|345780791|ref|XP_859879.2| PREDICTED: ELAV-like protein 4 isoform 4 [Canis lupus familiaris]
Length = 364
Score = 142 bits (357), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 70/87 (80%), Positives = 75/87 (86%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 81 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 140
Query: 92 MSQQELESLFSPYGRIITSRILCDNLA 118
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 141 MTQKELEQLFSQYGRIITSRILVDQVT 167
>gi|221316773|ref|NP_001138249.1| ELAV-like protein 4 isoform 5 [Homo sapiens]
gi|114556458|ref|XP_001135525.1| PREDICTED: ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 isoform 9 [Pan troglodytes]
gi|332219805|ref|XP_003259048.1| PREDICTED: ELAV-like protein 4 isoform 3 [Nomascus leucogenys]
gi|397518908|ref|XP_003829617.1| PREDICTED: ELAV-like protein 4 isoform 4 [Pan paniscus]
gi|402854507|ref|XP_003891909.1| PREDICTED: ELAV-like protein 4 isoform 3 [Papio anubis]
gi|426329577|ref|XP_004025815.1| PREDICTED: ELAV-like protein 4 isoform 3 [Gorilla gorilla gorilla]
gi|119627250|gb|EAX06845.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu
antigen D), isoform CRA_e [Homo sapiens]
gi|221041752|dbj|BAH12553.1| unnamed protein product [Homo sapiens]
Length = 369
Score = 142 bits (357), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 70/87 (80%), Positives = 75/87 (86%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 86 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 145
Query: 92 MSQQELESLFSPYGRIITSRILCDNLA 118
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 146 MTQKELEQLFSQYGRIITSRILVDQVT 172
>gi|15020256|gb|AAK74153.1| ELAV-like neuronal protein-2 [Mus musculus]
Length = 347
Score = 142 bits (357), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 70/86 (81%), Positives = 75/86 (87%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 76 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 135
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 136 MTQKELEQLFSQYGRIITSRILVDQV 161
Score = 36.6 bits (83), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 54 NTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRIL 113
NT NG N ++E K NL V+ LP++M+Q+EL+SLF G I + +++
Sbjct: 13 NTANGPTTVNNNCSSPVDSGNTEDSK-TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLV 71
Query: 114 CDNLATENGKY 124
D + ++ Y
Sbjct: 72 RDKITGQSLGY 82
>gi|6754264|ref|NP_034616.1| ELAV-like protein 2 isoform 2 [Mus musculus]
gi|13124206|sp|Q60899.1|ELAV2_MOUSE RecName: Full=ELAV-like protein 2; AltName: Full=ELAV-like neuronal
protein 1; AltName: Full=Hu-antigen B; Short=HuB;
AltName: Full=Nervous system-specific RNA-binding
protein Mel-N1
gi|1144004|gb|AAC52644.1| nervous system-specific RNA binding protein Mel-N1 [Mus musculus]
gi|15020258|gb|AAK74154.1| ELAV-like neuronal protein-1 [Mus musculus]
gi|148699000|gb|EDL30947.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B) [Mus musculus]
Length = 360
Score = 142 bits (357), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 70/86 (81%), Positives = 75/86 (87%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 76 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 135
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 136 MTQKELEQLFSQYGRIITSRILVDQV 161
Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 54 NTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRIL 113
NT NG N ++E K NL V+ LP++M+Q+EL+SLF G I + +++
Sbjct: 13 NTANGPTTVNNNCSSPVDSGNTEDSK-TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLV 71
Query: 114 CDNLATENGKY 124
D + ++ Y
Sbjct: 72 RDKITGQSLGY 82
>gi|344248615|gb|EGW04719.1| ELAV-like protein 2 [Cricetulus griseus]
Length = 347
Score = 142 bits (357), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 70/86 (81%), Positives = 75/86 (87%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 76 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 135
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 136 MTQKELEQLFSQYGRIITSRILVDQV 161
Score = 36.2 bits (82), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 54 NTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRIL 113
NT NG N +E K NL V+ LP++M+Q+EL+SLF G I + +++
Sbjct: 13 NTANGPTTVNNNCSSPVDSGKTEDSK-TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLV 71
Query: 114 CDNLATENGKY 124
D + ++ Y
Sbjct: 72 RDKITGQSLGY 82
>gi|119627248|gb|EAX06843.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu
antigen D), isoform CRA_c [Homo sapiens]
Length = 356
Score = 142 bits (357), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 70/87 (80%), Positives = 75/87 (86%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 86 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 145
Query: 92 MSQQELESLFSPYGRIITSRILCDNLA 118
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 146 MTQKELEQLFSQYGRIITSRILVDQVT 172
>gi|295424162|ref|NP_001171354.1| ELAV-like protein 2 isoform 4 [Mus musculus]
gi|74206254|dbj|BAE24886.1| unnamed protein product [Mus musculus]
gi|149044490|gb|EDL97749.1| rCG53485, isoform CRA_a [Rattus norvegicus]
Length = 359
Score = 142 bits (357), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 70/86 (81%), Positives = 75/86 (87%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 76 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 135
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 136 MTQKELEQLFSQYGRIITSRILVDQV 161
Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 54 NTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRIL 113
NT NG N ++E K NL V+ LP++M+Q+EL+SLF G I + +++
Sbjct: 13 NTANGPTTVNNNCSSPVDSGNTEDSK-TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLV 71
Query: 114 CDNLATENGKY 124
D + ++ Y
Sbjct: 72 RDKITGQSLGY 82
>gi|397521309|ref|XP_003830739.1| PREDICTED: ELAV-like protein 2 isoform 2 [Pan paniscus]
gi|397521311|ref|XP_003830740.1| PREDICTED: ELAV-like protein 2 isoform 3 [Pan paniscus]
gi|397521313|ref|XP_003830741.1| PREDICTED: ELAV-like protein 2 isoform 4 [Pan paniscus]
Length = 346
Score = 142 bits (357), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 70/86 (81%), Positives = 75/86 (87%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 76 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 135
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 136 MTQKELEQLFSQYGRIITSRILVDQV 161
Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 54 NTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRIL 113
NT NG N + ++E K NL V+ LP++M+Q+EL+SLF G I + +++
Sbjct: 13 NTANGPTTINNSCSSPVDSGNTEDSK-TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLV 71
Query: 114 CDNLATENGKY 124
D + ++ Y
Sbjct: 72 RDKITGQSLGY 82
>gi|115511032|ref|NP_004423.2| ELAV-like protein 2 isoform a [Homo sapiens]
gi|197097794|ref|NP_001127414.1| ELAV-like protein 2 [Pongo abelii]
gi|149736900|ref|XP_001498035.1| PREDICTED: ELAV-like protein 2 isoform 1 [Equus caballus]
gi|291383145|ref|XP_002708096.1| PREDICTED: ELAV-like 2-like isoform 1 [Oryctolagus cuniculus]
gi|296190038|ref|XP_002743026.1| PREDICTED: ELAV-like protein 2 isoform 2 [Callithrix jacchus]
gi|311245695|ref|XP_001924617.2| PREDICTED: ELAV-like protein 2 isoform 1 [Sus scrofa]
gi|332229737|ref|XP_003264044.1| PREDICTED: ELAV-like protein 2 isoform 2 [Nomascus leucogenys]
gi|332831660|ref|XP_520515.3| PREDICTED: ELAV-like protein 2 isoform 3 [Pan troglodytes]
gi|345777488|ref|XP_865062.2| PREDICTED: ELAV-like protein 2 isoform 3 [Canis lupus familiaris]
gi|402897261|ref|XP_003911687.1| PREDICTED: ELAV-like protein 2 isoform 1 [Papio anubis]
gi|403272638|ref|XP_003928159.1| PREDICTED: ELAV-like protein 2 isoform 1 [Saimiri boliviensis
boliviensis]
gi|426220513|ref|XP_004004459.1| PREDICTED: ELAV-like protein 2 isoform 1 [Ovis aries]
gi|426361461|ref|XP_004047929.1| PREDICTED: ELAV-like protein 2 isoform 1 [Gorilla gorilla gorilla]
gi|75070704|sp|Q5R9Z6.1|ELAV2_PONAB RecName: Full=ELAV-like protein 2
gi|93141258|sp|Q12926.2|ELAV2_HUMAN RecName: Full=ELAV-like protein 2; AltName: Full=ELAV-like neuronal
protein 1; AltName: Full=Hu-antigen B; Short=HuB;
AltName: Full=Nervous system-specific RNA-binding
protein Hel-N1
gi|55729364|emb|CAH91414.1| hypothetical protein [Pongo abelii]
gi|119578989|gb|EAW58585.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B), isoform CRA_d [Homo sapiens]
gi|261860488|dbj|BAI46766.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like protein 2
[synthetic construct]
gi|380784355|gb|AFE64053.1| ELAV-like protein 2 isoform a [Macaca mulatta]
Length = 359
Score = 142 bits (357), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 70/86 (81%), Positives = 75/86 (87%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 76 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 135
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 136 MTQKELEQLFSQYGRIITSRILVDQV 161
Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 54 NTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRIL 113
NT NG N ++E K NL V+ LP++M+Q+EL+SLF G I + +++
Sbjct: 13 NTANGPTTINNNCSSPVDSGNTEDSK-TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLV 71
Query: 114 CDNLATENGKY 124
D + ++ Y
Sbjct: 72 RDKITGQSLGY 82
>gi|46592826|ref|NP_997569.1| ELAV-like protein 2 isoform 3 [Mus musculus]
gi|49114392|gb|AAH46598.2| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B) [Mus musculus]
Length = 347
Score = 142 bits (357), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 70/86 (81%), Positives = 75/86 (87%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 76 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 135
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 136 MTQKELEQLFSQYGRIITSRILVDQV 161
Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 54 NTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRIL 113
NT NG N ++E K NL V+ LP++M+Q+EL+SLF G I + +++
Sbjct: 13 NTANGPTTVNNNCSSPVDSGNTEDSK-TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLV 71
Query: 114 CDNLATENGKY 124
D + ++ Y
Sbjct: 72 RDKITGQSLGY 82
>gi|73977009|ref|XP_532585.2| PREDICTED: ELAV-like protein 4 isoform 1 [Canis lupus familiaris]
gi|291398932|ref|XP_002715154.1| PREDICTED: ELAV-like 4-like isoform 5 [Oryctolagus cuniculus]
gi|426215486|ref|XP_004002003.1| PREDICTED: ELAV-like protein 4 isoform 3 [Ovis aries]
Length = 366
Score = 142 bits (357), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 70/87 (80%), Positives = 75/87 (86%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 83 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 142
Query: 92 MSQQELESLFSPYGRIITSRILCDNLA 118
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 143 MTQKELEQLFSQYGRIITSRILVDQVT 169
>gi|410978372|ref|XP_003995567.1| PREDICTED: ELAV-like protein 2-like isoform 2 [Felis catus]
Length = 360
Score = 142 bits (357), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 70/86 (81%), Positives = 75/86 (87%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 76 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 135
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 136 MTQKELEQLFSQYGRIITSRILVDQV 161
Score = 36.2 bits (82), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 54 NTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRIL 113
NT NG N ++E K NL V+ LP++M+Q+EL+SLF G I + +++
Sbjct: 13 NTANGPTTINNNCSSPVDSGNTEDSK-TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLV 71
Query: 114 CDNLATENGKY 124
D + ++ Y
Sbjct: 72 RDKITGQSLGY 82
>gi|395855039|ref|XP_003799979.1| PREDICTED: ELAV-like protein 4 isoform 2 [Otolemur garnettii]
Length = 383
Score = 142 bits (357), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 70/87 (80%), Positives = 75/87 (86%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 100 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 159
Query: 92 MSQQELESLFSPYGRIITSRILCDNLA 118
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 160 MTQKELEQLFSQYGRIITSRILVDQVT 186
>gi|297664975|ref|XP_002810888.1| PREDICTED: ELAV-like protein 4 isoform 1 [Pongo abelii]
Length = 369
Score = 142 bits (357), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 70/87 (80%), Positives = 75/87 (86%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 86 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 145
Query: 92 MSQQELESLFSPYGRIITSRILCDNLA 118
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 146 MTQKELEQLFSQYGRIITSRILVDQVT 172
>gi|149693653|ref|XP_001492549.1| PREDICTED: ELAV-like protein 4 isoform 3 [Equus caballus]
Length = 366
Score = 142 bits (357), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 70/87 (80%), Positives = 75/87 (86%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 83 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 142
Query: 92 MSQQELESLFSPYGRIITSRILCDNLA 118
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 143 MTQKELEQLFSQYGRIITSRILVDQVT 169
>gi|432103090|gb|ELK30412.1| ELAV-like protein 2 [Myotis davidii]
Length = 416
Score = 142 bits (357), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 70/86 (81%), Positives = 75/86 (87%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 133 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 192
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 193 MTQKELEQLFSQYGRIITSRILVDQV 218
Score = 36.2 bits (82), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 54 NTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRIL 113
NT NG N ++E K NL V+ LP++M+Q+EL+SLF G I + +++
Sbjct: 70 NTANGPTTINNNCSSPVDSGNTEDSK-TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLV 128
Query: 114 CDNLATENGKY 124
D + ++ Y
Sbjct: 129 RDKITGQSLGY 139
>gi|521144|gb|AAA69698.1| ELAV-like neuronal protein 1 [Homo sapiens]
Length = 359
Score = 142 bits (357), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 70/86 (81%), Positives = 75/86 (87%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 76 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 135
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 136 MTQKELEQLFSQYGRIITSRILVDQV 161
Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 54 NTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRIL 113
NT NG N ++E K NL V+ LP++M+Q+EL+SLF G I + +++
Sbjct: 13 NTANGPTTINNNCSSPVDSGNTEDSK-TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLV 71
Query: 114 CDNLATENGKY 124
D + ++ Y
Sbjct: 72 RDKITGQSLGY 82
>gi|390465924|ref|XP_002750851.2| PREDICTED: ELAV-like protein 4 isoform 1 [Callithrix jacchus]
Length = 366
Score = 142 bits (357), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 70/87 (80%), Positives = 75/87 (86%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 83 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 142
Query: 92 MSQQELESLFSPYGRIITSRILCDNLA 118
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 143 MTQKELEQLFSQYGRIITSRILVDQVT 169
>gi|348587078|ref|XP_003479295.1| PREDICTED: ELAV-like protein 2 isoform 2 [Cavia porcellus]
Length = 347
Score = 142 bits (357), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 70/86 (81%), Positives = 75/86 (87%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 76 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 135
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 136 MTQKELEQLFSQYGRIITSRILVDQV 161
Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 54 NTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRIL 113
NT NG N ++E K NL V+ LP++M+Q+EL+SLF G I + +++
Sbjct: 13 NTTNGPTTINNNCSSPVDSGNTEDSK-TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLV 71
Query: 114 CDNLATENGKY 124
D + ++ Y
Sbjct: 72 RDKITGQSLGY 82
>gi|49119672|gb|AAH72716.1| Zgc:91918 [Danio rerio]
Length = 360
Score = 142 bits (357), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 69/86 (80%), Positives = 75/86 (87%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 76 TGQSLGYGFVNYMEPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 135
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+Q+ELE LFS +GRIITSRIL D +
Sbjct: 136 MTQKELEQLFSQFGRIITSRILVDQV 161
Score = 35.4 bits (80), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%)
Query: 57 NGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
NG + T P+ NL V+ LP++M+Q+EL+SLF G I + +++ D
Sbjct: 15 NGPNSVSNTCTSPVEMPNGSEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDK 74
Query: 117 LATENGKY 124
+ ++ Y
Sbjct: 75 ITGQSLGY 82
>gi|905387|gb|AAA70417.1| Hel-N2 [Homo sapiens]
Length = 346
Score = 142 bits (357), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 70/86 (81%), Positives = 75/86 (87%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 76 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 135
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 136 MTQKELEQLFSQYGRIITSRILVDQV 161
Score = 36.2 bits (82), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 54 NTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRIL 113
NT NG N ++E K NL V+ LP++M+Q+EL+SLF G I + +++
Sbjct: 13 NTANGPTTINNNCSSPVDSGNTEDSK-TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLV 71
Query: 114 CDNLATENGKY 124
D + ++ Y
Sbjct: 72 RDKITGQSLGY 82
>gi|390465918|ref|XP_003733489.1| PREDICTED: ELAV-like protein 4 isoform 2 [Callithrix jacchus]
gi|403258117|ref|XP_003921625.1| PREDICTED: ELAV-like protein 4 isoform 1 [Saimiri boliviensis
boliviensis]
Length = 371
Score = 142 bits (357), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 70/87 (80%), Positives = 75/87 (86%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 88 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 147
Query: 92 MSQQELESLFSPYGRIITSRILCDNLA 118
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 148 MTQKELEQLFSQYGRIITSRILVDQVT 174
>gi|62739311|gb|AAH94189.1| Elavl2-a protein [Xenopus laevis]
Length = 359
Score = 142 bits (357), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 70/86 (81%), Positives = 75/86 (87%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 74 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 133
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 134 MTQKELEQLFSQYGRIITSRILVDQV 159
>gi|359067954|ref|XP_002707879.2| PREDICTED: LOW QUALITY PROTEIN: eLAV (embryonic lethal, abnormal
vision, Drosophila)-like 2 (Hu antigen B)-like [Bos
taurus]
Length = 346
Score = 142 bits (357), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 70/86 (81%), Positives = 75/86 (87%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 76 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 135
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 136 MTQKELEQLFSQYGRIITSRILVDQV 161
Score = 36.2 bits (82), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 54 NTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRIL 113
NT NG N ++E K NL V+ LP++M+Q+EL+SLF G I + +++
Sbjct: 13 NTANGPTTINNNCSSPVDSGNTEDSK-TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLV 71
Query: 114 CDNLATENGKY 124
D + ++ Y
Sbjct: 72 RDKITGQSLGY 82
>gi|195347400|ref|XP_002040241.1| GM19036 [Drosophila sechellia]
gi|195564435|ref|XP_002105824.1| GD16475 [Drosophila simulans]
gi|194121669|gb|EDW43712.1| GM19036 [Drosophila sechellia]
gi|194203185|gb|EDX16761.1| GD16475 [Drosophila simulans]
Length = 466
Score = 142 bits (357), Expect = 6e-32, Method: Composition-based stats.
Identities = 66/83 (79%), Positives = 77/83 (92%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
S QSLGYGFVNY RP+DAE+A+N LNGLRLQNKTIKVS+ARPSS++IKGANLYVSGLPK
Sbjct: 181 SQGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDAIKGANLYVSGLPK 240
Query: 91 HMSQQELESLFSPYGRIITSRIL 113
M+QQELE++F+P+G IITSRIL
Sbjct: 241 TMTQQELEAIFAPFGAIITSRIL 263
Score = 35.0 bits (79), Expect = 9.0, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY 70
+T Q GYGFV+ ++A AI LNG + N+ ++VS+
Sbjct: 421 TTNQCKGYGFVSMTNYDEAAMAIRALNGYTMGNRVLQVSF 460
>gi|195130285|ref|XP_002009582.1| GI15436 [Drosophila mojavensis]
gi|193908032|gb|EDW06899.1| GI15436 [Drosophila mojavensis]
Length = 475
Score = 142 bits (357), Expect = 6e-32, Method: Composition-based stats.
Identities = 66/83 (79%), Positives = 77/83 (92%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
S QSLGYGFVNY RP+DAE+A+N LNGLRLQNKTIKVS+ARPSS++IKGANLYVSGLPK
Sbjct: 190 SKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDAIKGANLYVSGLPK 249
Query: 91 HMSQQELESLFSPYGRIITSRIL 113
M+QQELE++F+P+G IITSRIL
Sbjct: 250 TMTQQELEAIFAPFGAIITSRIL 272
Score = 35.0 bits (79), Expect = 9.0, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY 70
+T Q GYGFV+ ++A AI LNG + N+ ++VS+
Sbjct: 430 TTNQCKGYGFVSMTNYDEAAMAIRALNGYTMGNRVLQVSF 469
>gi|194768871|ref|XP_001966534.1| GF22224 [Drosophila ananassae]
gi|190617298|gb|EDV32822.1| GF22224 [Drosophila ananassae]
Length = 490
Score = 142 bits (357), Expect = 6e-32, Method: Composition-based stats.
Identities = 66/83 (79%), Positives = 77/83 (92%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
S QSLGYGFVNY RP+DAE+A+N LNGLRLQNKTIKVS+ARPSS++IKGANLYVSGLPK
Sbjct: 205 SKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDAIKGANLYVSGLPK 264
Query: 91 HMSQQELESLFSPYGRIITSRIL 113
M+QQELE++F+P+G IITSRIL
Sbjct: 265 TMTQQELEAIFAPFGAIITSRIL 287
Score = 35.0 bits (79), Expect = 9.0, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY 70
+T Q GYGFV+ ++A AI LNG + N+ ++VS+
Sbjct: 445 TTNQCKGYGFVSMTNYDEAAMAIRALNGYTMGNRVLQVSF 484
>gi|117557982|gb|AAI27339.1| ELAV (embryonic lethal, abnormal vision)-like 2 (Hu antigen B)
[Xenopus (Silurana) tropicalis]
Length = 346
Score = 142 bits (357), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 70/86 (81%), Positives = 75/86 (87%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 75 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 134
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 135 MTQKELEQLFSQYGRIITSRILVDQV 160
>gi|254281259|ref|NP_001156869.1| ELAV-like protein 4 isoform c [Mus musculus]
Length = 356
Score = 142 bits (357), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 70/87 (80%), Positives = 75/87 (86%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 86 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 145
Query: 92 MSQQELESLFSPYGRIITSRILCDNLA 118
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 146 MTQKELEQLFSQYGRIITSRILVDQVT 172
>gi|62088168|dbj|BAD92531.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B) variant [Homo sapiens]
Length = 367
Score = 142 bits (357), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 70/86 (81%), Positives = 75/86 (87%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 84 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 143
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 144 MTQKELEQLFSQYGRIITSRILVDQV 169
Score = 36.2 bits (82), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 54 NTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRIL 113
NT NG N ++E K NL V+ LP++M+Q+EL+SLF G I + +++
Sbjct: 21 NTANGPTTINNNCSSPVDSGNTEDSK-TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLV 79
Query: 114 CDNLATENGKY 124
D + ++ Y
Sbjct: 80 RDKITGQSLGY 90
>gi|15020254|gb|AAK74152.1| ELAV-like neuronal protein-3 [Mus musculus]
Length = 348
Score = 142 bits (357), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 70/86 (81%), Positives = 75/86 (87%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 76 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 135
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 136 MTQKELEQLFSQYGRIITSRILVDQV 161
Score = 36.6 bits (83), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 54 NTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRIL 113
NT NG N ++E K NL V+ LP++M+Q+EL+SLF G I + +++
Sbjct: 13 NTANGPTTVNNNCSSPVDSGNTEDSK-TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLV 71
Query: 114 CDNLATENGKY 124
D + ++ Y
Sbjct: 72 RDKITGQSLGY 82
>gi|81914424|sp|Q8CH84.1|ELAV2_RAT RecName: Full=ELAV-like protein 2; AltName: Full=Hu-antigen B;
Short=HuB
gi|27374986|dbj|BAC53775.1| RNA binding protein HuB [Rattus norvegicus]
Length = 359
Score = 142 bits (357), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 70/86 (81%), Positives = 75/86 (87%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 76 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 135
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 136 MTQKELEQLFSQYGRIITSRILVDQV 161
>gi|297664977|ref|XP_002810889.1| PREDICTED: ELAV-like protein 4 isoform 2 [Pongo abelii]
Length = 380
Score = 142 bits (357), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 70/87 (80%), Positives = 75/87 (86%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 83 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 142
Query: 92 MSQQELESLFSPYGRIITSRILCDNLA 118
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 143 MTQKELEQLFSQYGRIITSRILVDQVT 169
>gi|73977005|ref|XP_860272.1| PREDICTED: ELAV-like protein 4 isoform 15 [Canis lupus familiaris]
Length = 380
Score = 142 bits (357), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 70/87 (80%), Positives = 75/87 (86%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 83 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 142
Query: 92 MSQQELESLFSPYGRIITSRILCDNLA 118
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 143 MTQKELEQLFSQYGRIITSRILVDQVT 169
>gi|334321532|ref|XP_003340124.1| PREDICTED: ELAV-like protein 4 isoform 2 [Monodelphis domestica]
Length = 347
Score = 142 bits (357), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 70/87 (80%), Positives = 75/87 (86%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 76 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 135
Query: 92 MSQQELESLFSPYGRIITSRILCDNLA 118
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 136 MTQKELEQLFSQYGRIITSRILVDQVT 162
>gi|179537|gb|AAA58396.1| brain protein [Homo sapiens]
gi|14280329|gb|AAK57541.1| HUDPRO1 [Homo sapiens]
gi|119627247|gb|EAX06842.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu
antigen D), isoform CRA_b [Homo sapiens]
Length = 380
Score = 142 bits (357), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 70/87 (80%), Positives = 75/87 (86%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 83 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 142
Query: 92 MSQQELESLFSPYGRIITSRILCDNLA 118
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 143 MTQKELEQLFSQYGRIITSRILVDQVT 169
>gi|2801552|gb|AAC40080.1| RNA binding protein Elavl4 [Mus musculus]
Length = 346
Score = 142 bits (357), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 70/86 (81%), Positives = 75/86 (87%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 76 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 135
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 136 MTQKELEQLFSQYGRIITSRILVDQV 161
Score = 35.0 bits (79), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 35/71 (49%)
Query: 54 NTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRIL 113
NT NG N+ ++ NL V+ LP++M+Q+E SLF G I + +++
Sbjct: 12 NTSNGPSSNNRNCPSPMQTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLV 71
Query: 114 CDNLATENGKY 124
D + ++ Y
Sbjct: 72 RDKITGQSLGY 82
>gi|344241813|gb|EGV97916.1| ELAV-like protein 4 [Cricetulus griseus]
gi|431896875|gb|ELK06139.1| ELAV-like protein 4, partial [Pteropus alecto]
Length = 350
Score = 142 bits (357), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 70/86 (81%), Positives = 75/86 (87%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 80 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 139
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 140 MTQKELEQLFSQYGRIITSRILVDQV 165
>gi|283945529|ref|NP_001164666.1| ELAV-like protein 2 isoform b [Homo sapiens]
gi|283945537|ref|NP_001164668.1| ELAV-like protein 2 isoform b [Homo sapiens]
gi|386781798|ref|NP_001247929.1| ELAV-like protein 2 [Macaca mulatta]
gi|73971067|ref|XP_865045.1| PREDICTED: ELAV-like protein 2 isoform 2 [Canis lupus familiaris]
gi|296190040|ref|XP_002743027.1| PREDICTED: ELAV-like protein 2 isoform 3 [Callithrix jacchus]
gi|296190042|ref|XP_002743028.1| PREDICTED: ELAV-like protein 2 isoform 4 [Callithrix jacchus]
gi|311245697|ref|XP_003121925.1| PREDICTED: ELAV-like protein 2 isoform 2 [Sus scrofa]
gi|332229735|ref|XP_003264043.1| PREDICTED: ELAV-like protein 2 isoform 1 [Nomascus leucogenys]
gi|332229739|ref|XP_003264045.1| PREDICTED: ELAV-like protein 2 isoform 3 [Nomascus leucogenys]
gi|332831658|ref|XP_003312071.1| PREDICTED: ELAV-like protein 2 isoform 1 [Pan troglodytes]
gi|332831662|ref|XP_003312072.1| PREDICTED: ELAV-like protein 2 isoform 2 [Pan troglodytes]
gi|338719470|ref|XP_003364010.1| PREDICTED: ELAV-like protein 2 isoform 2 [Equus caballus]
gi|344271095|ref|XP_003407377.1| PREDICTED: ELAV-like protein 2-like [Loxodonta africana]
gi|402897263|ref|XP_003911688.1| PREDICTED: ELAV-like protein 2 isoform 2 [Papio anubis]
gi|402897265|ref|XP_003911689.1| PREDICTED: ELAV-like protein 2 isoform 3 [Papio anubis]
gi|402897267|ref|XP_003911690.1| PREDICTED: ELAV-like protein 2 isoform 4 [Papio anubis]
gi|403272640|ref|XP_003928160.1| PREDICTED: ELAV-like protein 2 isoform 2 [Saimiri boliviensis
boliviensis]
gi|403272642|ref|XP_003928161.1| PREDICTED: ELAV-like protein 2 isoform 3 [Saimiri boliviensis
boliviensis]
gi|410042502|ref|XP_003951453.1| PREDICTED: ELAV-like protein 2 [Pan troglodytes]
gi|410978370|ref|XP_003995566.1| PREDICTED: ELAV-like protein 2-like isoform 1 [Felis catus]
gi|426220515|ref|XP_004004460.1| PREDICTED: ELAV-like protein 2 isoform 2 [Ovis aries]
gi|426220517|ref|XP_004004461.1| PREDICTED: ELAV-like protein 2 isoform 3 [Ovis aries]
gi|426361463|ref|XP_004047930.1| PREDICTED: ELAV-like protein 2 isoform 2 [Gorilla gorilla gorilla]
gi|426361465|ref|XP_004047931.1| PREDICTED: ELAV-like protein 2 isoform 3 [Gorilla gorilla gorilla]
gi|426361467|ref|XP_004047932.1| PREDICTED: ELAV-like protein 2 isoform 4 [Gorilla gorilla gorilla]
gi|441622584|ref|XP_004088846.1| PREDICTED: ELAV-like protein 2 [Nomascus leucogenys]
gi|21265137|gb|AAH30692.1| ELAVL2 protein [Homo sapiens]
gi|119578985|gb|EAW58581.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B), isoform CRA_a [Homo sapiens]
gi|119578986|gb|EAW58582.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B), isoform CRA_a [Homo sapiens]
gi|123981428|gb|ABM82543.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B) [synthetic construct]
gi|123996267|gb|ABM85735.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B) [synthetic construct]
gi|157928304|gb|ABW03448.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B) [synthetic construct]
gi|384945702|gb|AFI36456.1| ELAV-like protein 2 isoform b [Macaca mulatta]
gi|384945704|gb|AFI36457.1| ELAV-like protein 2 isoform b [Macaca mulatta]
gi|387541444|gb|AFJ71349.1| ELAV-like protein 2 isoform b [Macaca mulatta]
Length = 346
Score = 142 bits (357), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 70/86 (81%), Positives = 75/86 (87%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 76 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 135
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 136 MTQKELEQLFSQYGRIITSRILVDQV 161
Score = 36.2 bits (82), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 54 NTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRIL 113
NT NG N ++E K NL V+ LP++M+Q+EL+SLF G I + +++
Sbjct: 13 NTANGPTTINNNCSSPVDSGNTEDSK-TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLV 71
Query: 114 CDNLATENGKY 124
D + ++ Y
Sbjct: 72 RDKITGQSLGY 82
>gi|410921400|ref|XP_003974171.1| PREDICTED: LOW QUALITY PROTEIN: ELAV-like protein 4-like [Takifugu
rubripes]
Length = 414
Score = 142 bits (357), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 70/86 (81%), Positives = 75/86 (87%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 119 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 178
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 179 MTQKELEQLFSQYGRIITSRILVDQV 204
>gi|348554577|ref|XP_003463102.1| PREDICTED: ELAV-like protein 4 isoform 1 [Cavia porcellus]
gi|354468154|ref|XP_003496532.1| PREDICTED: ELAV-like protein 4 isoform 2 [Cricetulus griseus]
Length = 383
Score = 142 bits (357), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 70/87 (80%), Positives = 75/87 (86%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 100 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 159
Query: 92 MSQQELESLFSPYGRIITSRILCDNLA 118
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 160 MTQKELEQLFSQYGRIITSRILVDQVT 186
>gi|194911931|ref|XP_001982402.1| GG12756 [Drosophila erecta]
gi|190648078|gb|EDV45371.1| GG12756 [Drosophila erecta]
Length = 466
Score = 142 bits (357), Expect = 6e-32, Method: Composition-based stats.
Identities = 66/83 (79%), Positives = 77/83 (92%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
S QSLGYGFVNY RP+DAE+A+N LNGLRLQNKTIKVS+ARPSS++IKGANLYVSGLPK
Sbjct: 181 SQGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDAIKGANLYVSGLPK 240
Query: 91 HMSQQELESLFSPYGRIITSRIL 113
M+QQELE++F+P+G IITSRIL
Sbjct: 241 TMTQQELEAIFAPFGAIITSRIL 263
Score = 35.0 bits (79), Expect = 9.2, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY 70
+T Q GYGFV+ ++A AI LNG + N+ ++VS+
Sbjct: 421 TTNQCKGYGFVSMTNYDEAAMAIRALNGYTMGNRVLQVSF 460
>gi|348554579|ref|XP_003463103.1| PREDICTED: ELAV-like protein 4 isoform 2 [Cavia porcellus]
Length = 347
Score = 142 bits (357), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 70/86 (81%), Positives = 75/86 (87%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 76 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 135
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 136 MTQKELEQLFSQYGRIITSRILVDQV 161
>gi|149693657|ref|XP_001492578.1| PREDICTED: ELAV-like protein 4 isoform 4 [Equus caballus]
Length = 380
Score = 142 bits (357), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 70/86 (81%), Positives = 75/86 (87%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 83 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 142
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 143 MTQKELEQLFSQYGRIITSRILVDQV 168
>gi|71051886|gb|AAH99348.1| ElrD protein, partial [Xenopus laevis]
Length = 360
Score = 142 bits (357), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 70/86 (81%), Positives = 75/86 (87%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 77 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 136
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 137 MTQKELEQLFSQYGRIITSRILVDQV 162
>gi|194207476|ref|XP_001492529.2| PREDICTED: ELAV-like protein 4 isoform 2 [Equus caballus]
Length = 383
Score = 142 bits (357), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 70/87 (80%), Positives = 75/87 (86%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 100 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 159
Query: 92 MSQQELESLFSPYGRIITSRILCDNLA 118
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 160 MTQKELEQLFSQYGRIITSRILVDQVT 186
>gi|221316765|ref|NP_068771.2| ELAV-like protein 4 isoform 1 [Homo sapiens]
gi|114556466|ref|XP_001134946.1| PREDICTED: ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 isoform 2 [Pan troglodytes]
gi|332219811|ref|XP_003259051.1| PREDICTED: ELAV-like protein 4 isoform 6 [Nomascus leucogenys]
gi|395855045|ref|XP_003799982.1| PREDICTED: ELAV-like protein 4 isoform 5 [Otolemur garnettii]
gi|397518912|ref|XP_003829619.1| PREDICTED: ELAV-like protein 4 isoform 6 [Pan paniscus]
gi|402854513|ref|XP_003891912.1| PREDICTED: ELAV-like protein 4 isoform 6 [Papio anubis]
gi|426329583|ref|XP_004025818.1| PREDICTED: ELAV-like protein 4 isoform 6 [Gorilla gorilla gorilla]
gi|223590202|sp|P26378.2|ELAV4_HUMAN RecName: Full=ELAV-like protein 4; AltName: Full=Hu-antigen D;
Short=HuD; AltName: Full=Paraneoplastic
encephalomyelitis antigen HuD
gi|380810344|gb|AFE77047.1| ELAV-like protein 4 isoform 1 [Macaca mulatta]
Length = 380
Score = 142 bits (357), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 70/87 (80%), Positives = 75/87 (86%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 83 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 142
Query: 92 MSQQELESLFSPYGRIITSRILCDNLA 118
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 143 MTQKELEQLFSQYGRIITSRILVDQVT 169
>gi|28879001|gb|AAH48159.1| Elavl4 protein [Mus musculus]
Length = 412
Score = 142 bits (357), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 70/86 (81%), Positives = 75/86 (87%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 88 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 147
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 148 MTQKELEQLFSQYGRIITSRILVDQV 173
>gi|221316769|ref|NP_001138247.1| ELAV-like protein 4 isoform 3 [Homo sapiens]
gi|14280325|gb|AAK57539.1| HUD4 [Homo sapiens]
Length = 383
Score = 142 bits (357), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 70/87 (80%), Positives = 75/87 (86%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 100 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 159
Query: 92 MSQQELESLFSPYGRIITSRILCDNLA 118
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 160 MTQKELEQLFSQYGRIITSRILVDQVT 186
>gi|390465926|ref|XP_003733492.1| PREDICTED: ELAV-like protein 4 isoform 5 [Callithrix jacchus]
gi|403258123|ref|XP_003921628.1| PREDICTED: ELAV-like protein 4 isoform 4 [Saimiri boliviensis
boliviensis]
Length = 380
Score = 142 bits (357), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 70/87 (80%), Positives = 75/87 (86%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 83 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 142
Query: 92 MSQQELESLFSPYGRIITSRILCDNLA 118
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 143 MTQKELEQLFSQYGRIITSRILVDQVT 169
>gi|84662764|ref|NP_001033787.1| ELAV-like protein 4 isoform b [Mus musculus]
gi|291398924|ref|XP_002715150.1| PREDICTED: ELAV-like 4-like isoform 1 [Oryctolagus cuniculus]
gi|426215488|ref|XP_004002004.1| PREDICTED: ELAV-like protein 4 isoform 4 [Ovis aries]
gi|26347767|dbj|BAC37532.1| unnamed protein product [Mus musculus]
gi|112180554|gb|AAH52451.2| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu
antigen D) [Mus musculus]
Length = 380
Score = 142 bits (357), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 70/86 (81%), Positives = 75/86 (87%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 83 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 142
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 143 MTQKELEQLFSQYGRIITSRILVDQV 168
>gi|109123517|ref|XP_001107360.1| PREDICTED: ELAV-like protein 3-like [Macaca mulatta]
gi|296232958|ref|XP_002761808.1| PREDICTED: ELAV-like protein 3 [Callithrix jacchus]
Length = 251
Score = 142 bits (357), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 71/100 (71%), Positives = 78/100 (78%), Gaps = 2/100 (2%)
Query: 20 FSDAEICVFLIS--TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSES 77
D E C + T QSLGYGFVNY P DA+KAINTLNGL+LQ KTIKVSYARPSS S
Sbjct: 62 IGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSAS 121
Query: 78 IKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNL 117
I+ ANLYVSGLPK MSQ+E+E LFS YGRIITSRIL D +
Sbjct: 122 IRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQV 161
>gi|426229025|ref|XP_004008594.1| PREDICTED: ELAV-like protein 3 isoform 2 [Ovis aries]
Length = 318
Score = 142 bits (357), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 71/98 (72%), Positives = 78/98 (79%), Gaps = 2/98 (2%)
Query: 22 DAEICVFLIS--TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIK 79
D E C + T QSLGYGFVNY P DA+KAINTLNGL+LQ KTIKVSYARPSS SI+
Sbjct: 15 DIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIR 74
Query: 80 GANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNL 117
ANLYVSGLPK MSQ+E+E LFS YGRIITSRIL D +
Sbjct: 75 DANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQV 112
>gi|432856226|ref|XP_004068415.1| PREDICTED: ELAV-like protein 4-like [Oryzias latipes]
Length = 439
Score = 141 bits (356), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 70/86 (81%), Positives = 75/86 (87%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 155 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 214
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 215 MTQKELEQLFSQYGRIITSRILVDQV 240
>gi|355557990|gb|EHH14770.1| hypothetical protein EGK_00744 [Macaca mulatta]
Length = 385
Score = 141 bits (356), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 70/87 (80%), Positives = 75/87 (86%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 88 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 147
Query: 92 MSQQELESLFSPYGRIITSRILCDNLA 118
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 148 MTQKELEQLFSQYGRIITSRILVDQVT 174
>gi|397520903|ref|XP_003830547.1| PREDICTED: ELAV-like protein 3 isoform 2 [Pan paniscus]
Length = 311
Score = 141 bits (356), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 71/98 (72%), Positives = 78/98 (79%), Gaps = 2/98 (2%)
Query: 22 DAEICVFLIS--TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIK 79
D E C + T QSLGYGFVNY P DA+KAINTLNGL+LQ KTIKVSYARPSS SI+
Sbjct: 15 DIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIR 74
Query: 80 GANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNL 117
ANLYVSGLPK MSQ+E+E LFS YGRIITSRIL D +
Sbjct: 75 DANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQV 112
>gi|395819370|ref|XP_003783066.1| PREDICTED: ELAV-like protein 2 [Otolemur garnettii]
Length = 388
Score = 141 bits (356), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 70/86 (81%), Positives = 75/86 (87%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 105 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 164
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 165 MTQKELEQLFSQYGRIITSRILVDQV 190
Score = 36.2 bits (82), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 54 NTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRIL 113
NT NG N ++E K NL V+ LP++M+Q+EL+SLF G I + +++
Sbjct: 42 NTANGPTTINNNCSSPVDSGNTEDSK-TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLV 100
Query: 114 CDNLATENGKY 124
D + ++ Y
Sbjct: 101 RDKITGQSLGY 111
>gi|351713507|gb|EHB16426.1| ELAV-like protein 4 [Heterocephalus glaber]
Length = 385
Score = 141 bits (356), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 70/86 (81%), Positives = 75/86 (87%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 88 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 147
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 148 MTQKELEQLFSQYGRIITSRILVDQV 173
Score = 35.4 bits (80), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 35/71 (49%)
Query: 54 NTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRIL 113
NT NG N+ ++ NL V+ LP++M+Q+E SLF G I + +++
Sbjct: 24 NTSNGPSTNNRNCPSPMQTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLV 83
Query: 114 CDNLATENGKY 124
D + ++ Y
Sbjct: 84 RDKITGQSLGY 94
>gi|395730526|ref|XP_003775742.1| PREDICTED: ELAV-like protein 4 [Pongo abelii]
Length = 402
Score = 141 bits (356), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 70/87 (80%), Positives = 75/87 (86%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 119 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 178
Query: 92 MSQQELESLFSPYGRIITSRILCDNLA 118
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 179 MTQKELEQLFSQYGRIITSRILVDQVT 205
Score = 35.4 bits (80), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 52/110 (47%), Gaps = 4/110 (3%)
Query: 19 GFSDAEICVF---LISTAQSLGYGFVNYHRPEDAEKAI-NTLNGLRLQNKTIKVSYARPS 74
G +D + + +I+ +++ + ++ P+ + NT NG N+ +
Sbjct: 16 GLTDMRLLLLREIVINESRNCSFMIISTMEPQVSNGPTSNTSNGPTSNNRNCPSPMQTGA 75
Query: 75 SESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKY 124
+ NL V+ LP++M+Q+E SLF G I + +++ D + ++ Y
Sbjct: 76 TTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGY 125
>gi|84662766|ref|NP_034618.2| ELAV-like protein 4 isoform a [Mus musculus]
gi|354468156|ref|XP_003496533.1| PREDICTED: ELAV-like protein 4 isoform 3 [Cricetulus griseus]
gi|2500580|sp|Q61701.1|ELAV4_MOUSE RecName: Full=ELAV-like protein 4; AltName: Full=Hu-antigen D;
Short=HuD; AltName: Full=Paraneoplastic
encephalomyelitis antigen HuD
gi|603495|dbj|BAA06723.1| HuD [Mus musculus]
gi|440906869|gb|ELR57085.1| ELAV-like protein 4 [Bos grunniens mutus]
Length = 385
Score = 141 bits (356), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 70/86 (81%), Positives = 75/86 (87%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 88 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 147
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 148 MTQKELEQLFSQYGRIITSRILVDQV 173
>gi|355755476|gb|EHH59223.1| Hu-antigen C, partial [Macaca fascicularis]
Length = 237
Score = 141 bits (356), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 71/100 (71%), Positives = 78/100 (78%), Gaps = 2/100 (2%)
Query: 20 FSDAEICVFLIS--TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSES 77
D E C + T QSLGYGFVNY P DA+KAINTLNGL+LQ KTIKVSYARPSS S
Sbjct: 61 IGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSAS 120
Query: 78 IKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNL 117
I+ ANLYVSGLPK MSQ+E+E LFS YGRIITSRIL D +
Sbjct: 121 IRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQV 160
>gi|395850847|ref|XP_003797985.1| PREDICTED: ELAV-like protein 3 isoform 1 [Otolemur garnettii]
gi|397520901|ref|XP_003830546.1| PREDICTED: ELAV-like protein 3 isoform 1 [Pan paniscus]
gi|402904297|ref|XP_003914983.1| PREDICTED: ELAV-like protein 3 isoform 1 [Papio anubis]
gi|403302356|ref|XP_003941826.1| PREDICTED: ELAV-like protein 3 isoform 2 [Saimiri boliviensis
boliviensis]
gi|410950488|ref|XP_003981937.1| PREDICTED: ELAV-like protein 3 isoform 2 [Felis catus]
gi|14280337|gb|AAK57545.1| Hu antigen C long [Homo sapiens]
Length = 318
Score = 141 bits (356), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 71/98 (72%), Positives = 78/98 (79%), Gaps = 2/98 (2%)
Query: 22 DAEICVFLIS--TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIK 79
D E C + T QSLGYGFVNY P DA+KAINTLNGL+LQ KTIKVSYARPSS SI+
Sbjct: 15 DIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIR 74
Query: 80 GANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNL 117
ANLYVSGLPK MSQ+E+E LFS YGRIITSRIL D +
Sbjct: 75 DANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQV 112
>gi|47225636|emb|CAG07979.1| unnamed protein product [Tetraodon nigroviridis]
Length = 382
Score = 141 bits (356), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 70/87 (80%), Positives = 75/87 (86%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 82 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 141
Query: 92 MSQQELESLFSPYGRIITSRILCDNLA 118
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 142 MTQKELEQLFSQYGRIITSRILVDQVT 168
>gi|390465922|ref|XP_003733491.1| PREDICTED: ELAV-like protein 4 isoform 4 [Callithrix jacchus]
gi|403258121|ref|XP_003921627.1| PREDICTED: ELAV-like protein 4 isoform 3 [Saimiri boliviensis
boliviensis]
Length = 402
Score = 141 bits (356), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 70/87 (80%), Positives = 75/87 (86%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 119 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 178
Query: 92 MSQQELESLFSPYGRIITSRILCDNLA 118
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 179 MTQKELEQLFSQYGRIITSRILVDQVT 205
Score = 35.0 bits (79), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 52/110 (47%), Gaps = 4/110 (3%)
Query: 19 GFSDAEICVF---LISTAQSLGYGFVNYHRPEDAEKAI-NTLNGLRLQNKTIKVSYARPS 74
G +D + + +I+ +++ + ++ P+ + NT NG N+ +
Sbjct: 16 GLTDMRLLLLREIVINESRNCSFMIISTMEPQVSNGPTSNTSNGPSNNNRNCPSPMQTGA 75
Query: 75 SESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKY 124
+ NL V+ LP++M+Q+E SLF G I + +++ D + ++ Y
Sbjct: 76 TTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGY 125
>gi|348504313|ref|XP_003439706.1| PREDICTED: ELAV-like protein 4-like [Oreochromis niloticus]
Length = 476
Score = 141 bits (356), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 70/86 (81%), Positives = 75/86 (87%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 193 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 252
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 253 MTQKELEQLFSQYGRIITSRILVDQV 278
>gi|296485880|tpg|DAA27995.1| TPA: ELAV-like protein 3-like [Bos taurus]
Length = 407
Score = 141 bits (356), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 71/98 (72%), Positives = 78/98 (79%), Gaps = 2/98 (2%)
Query: 22 DAEICVFLIS--TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIK 79
D E C + T QSLGYGFVNY P DA+KAINTLNGL+LQ KTIKVSYARPSS SI+
Sbjct: 111 DIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIR 170
Query: 80 GANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNL 117
ANLYVSGLPK MSQ+E+E LFS YGRIITSRIL D +
Sbjct: 171 DANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQV 208
>gi|359067089|ref|XP_002688919.2| PREDICTED: ELAV-like protein 3 [Bos taurus]
Length = 408
Score = 141 bits (356), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 71/98 (72%), Positives = 78/98 (79%), Gaps = 2/98 (2%)
Query: 22 DAEICVFLIS--TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIK 79
D E C + T QSLGYGFVNY P DA+KAINTLNGL+LQ KTIKVSYARPSS SI+
Sbjct: 112 DIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIR 171
Query: 80 GANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNL 117
ANLYVSGLPK MSQ+E+E LFS YGRIITSRIL D +
Sbjct: 172 DANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQV 209
>gi|344278909|ref|XP_003411234.1| PREDICTED: ELAV-like protein 4-like [Loxodonta africana]
Length = 419
Score = 141 bits (356), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 70/86 (81%), Positives = 75/86 (87%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 136 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 195
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 196 MTQKELEQLFSQYGRIITSRILVDQV 221
Score = 35.4 bits (80), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 35/71 (49%)
Query: 54 NTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRIL 113
NT NG N+ ++ NL V+ LP++M+Q+E SLF G I + +++
Sbjct: 72 NTSNGPSSNNRNCPSPMQTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLV 131
Query: 114 CDNLATENGKY 124
D + ++ Y
Sbjct: 132 RDKITGQSLGY 142
>gi|542846|pir||JC2116 hippocampal 38K autoantigen protein - human
gi|2340828|dbj|BAA21838.1| PLE21 protein [Homo sapiens]
Length = 350
Score = 141 bits (356), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 71/98 (72%), Positives = 78/98 (79%), Gaps = 2/98 (2%)
Query: 22 DAEICVFLIS--TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIK 79
D E C + T QSLGYGFVNY P DA+KAINTLNGL+LQ KTIKVSYARPSS SI+
Sbjct: 55 DIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIR 114
Query: 80 GANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNL 117
ANLYVSGLPK MSQ+E+E LFS YGRIITSRIL D +
Sbjct: 115 DANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQV 152
>gi|332219807|ref|XP_003259049.1| PREDICTED: ELAV-like protein 4 isoform 4 [Nomascus leucogenys]
gi|332808951|ref|XP_001135610.2| PREDICTED: ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 isoform 10 [Pan troglodytes]
gi|397518906|ref|XP_003829616.1| PREDICTED: ELAV-like protein 4 isoform 3 [Pan paniscus]
gi|402854509|ref|XP_003891910.1| PREDICTED: ELAV-like protein 4 isoform 4 [Papio anubis]
gi|426329579|ref|XP_004025816.1| PREDICTED: ELAV-like protein 4 isoform 4 [Gorilla gorilla gorilla]
gi|119627246|gb|EAX06841.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu
antigen D), isoform CRA_a [Homo sapiens]
Length = 402
Score = 141 bits (356), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 70/87 (80%), Positives = 75/87 (86%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 119 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 178
Query: 92 MSQQELESLFSPYGRIITSRILCDNLA 118
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 179 MTQKELEQLFSQYGRIITSRILVDQVT 205
Score = 35.4 bits (80), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 52/110 (47%), Gaps = 4/110 (3%)
Query: 19 GFSDAEICVF---LISTAQSLGYGFVNYHRPEDAEKAI-NTLNGLRLQNKTIKVSYARPS 74
G +D + + +I+ +++ + ++ P+ + NT NG N+ +
Sbjct: 16 GLTDMRLLLLREIVINESRNCSFMIISTMEPQVSNGPTSNTSNGPSSNNRNCPSPMQTGA 75
Query: 75 SESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKY 124
+ NL V+ LP++M+Q+E SLF G I + +++ D + ++ Y
Sbjct: 76 TTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGY 125
>gi|432099588|gb|ELK28729.1| ELAV-like protein 4 [Myotis davidii]
Length = 405
Score = 141 bits (356), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 68/93 (73%), Positives = 77/93 (82%)
Query: 25 ICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLY 84
+ ++ T QSLGYGFVNY P DA+KAINTLNGL+LQ KTIKVSYARPSS SI+ ANLY
Sbjct: 134 VIDLVLHTGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLY 193
Query: 85 VSGLPKHMSQQELESLFSPYGRIITSRILCDNL 117
VSGLPK MSQ+E+E LFS YGRIITSRIL D +
Sbjct: 194 VSGLPKTMSQKEMEQLFSQYGRIITSRILVDQV 226
>gi|291398930|ref|XP_002715153.1| PREDICTED: ELAV-like 4-like isoform 4 [Oryctolagus cuniculus]
Length = 402
Score = 141 bits (356), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 70/87 (80%), Positives = 75/87 (86%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 119 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 178
Query: 92 MSQQELESLFSPYGRIITSRILCDNLA 118
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 179 MTQKELEQLFSQYGRIITSRILVDQVT 205
Score = 35.4 bits (80), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 52/110 (47%), Gaps = 4/110 (3%)
Query: 19 GFSDAEICVF---LISTAQSLGYGFVNYHRPEDAEKAI-NTLNGLRLQNKTIKVSYARPS 74
G +D + + +I+ +++ + ++ P+ + NT NG N+ +
Sbjct: 16 GLTDMRLLLLREIVINESRNCSFMIISTMEPQVSNGPTSNTSNGPSSNNRNCPSPMQTGA 75
Query: 75 SESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKY 124
+ NL V+ LP++M+Q+E SLF G I + +++ D + ++ Y
Sbjct: 76 ATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGY 125
>gi|426229023|ref|XP_004008593.1| PREDICTED: ELAV-like protein 3 isoform 1 [Ovis aries]
Length = 359
Score = 141 bits (356), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 71/98 (72%), Positives = 78/98 (79%), Gaps = 2/98 (2%)
Query: 22 DAEICVFLIS--TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIK 79
D E C + T QSLGYGFVNY P DA+KAINTLNGL+LQ KTIKVSYARPSS SI+
Sbjct: 63 DIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIR 122
Query: 80 GANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNL 117
ANLYVSGLPK MSQ+E+E LFS YGRIITSRIL D +
Sbjct: 123 DANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQV 160
>gi|410950486|ref|XP_003981936.1| PREDICTED: ELAV-like protein 3 isoform 1 [Felis catus]
gi|431918945|gb|ELK17812.1| ELAV-like protein 3 [Pteropus alecto]
Length = 352
Score = 141 bits (356), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 71/98 (72%), Positives = 78/98 (79%), Gaps = 2/98 (2%)
Query: 22 DAEICVFLIS--TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIK 79
D E C + T QSLGYGFVNY P DA+KAINTLNGL+LQ KTIKVSYARPSS SI+
Sbjct: 56 DIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIR 115
Query: 80 GANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNL 117
ANLYVSGLPK MSQ+E+E LFS YGRIITSRIL D +
Sbjct: 116 DANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQV 153
>gi|311248628|ref|XP_003123218.1| PREDICTED: LOW QUALITY PROTEIN: ELAV-like protein 3-like [Sus
scrofa]
Length = 359
Score = 141 bits (356), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 71/98 (72%), Positives = 78/98 (79%), Gaps = 2/98 (2%)
Query: 22 DAEICVFLIS--TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIK 79
D E C + T QSLGYGFVNY P DA+KAINTLNGL+LQ KTIKVSYARPSS SI+
Sbjct: 63 DIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIR 122
Query: 80 GANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNL 117
ANLYVSGLPK MSQ+E+E LFS YGRIITSRIL D +
Sbjct: 123 DANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQV 160
>gi|33356910|pdb|1FNX|H Chain H, Solution Structure Of The Huc Rbd1-Rbd2 Complexed With The
Au-Rich Element
Length = 174
Score = 141 bits (356), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 71/96 (73%), Positives = 77/96 (80%), Gaps = 2/96 (2%)
Query: 22 DAEICVFLIS--TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIK 79
D E C + T QSLGYGFVNY P DA+KAINTLNGL+LQ KTIKVSYARPSS SI+
Sbjct: 30 DIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIR 89
Query: 80 GANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
ANLYVSGLPK MSQ+E+E LFS YGRIITSRIL D
Sbjct: 90 DANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLD 125
>gi|281347138|gb|EFB22722.1| hypothetical protein PANDA_010481 [Ailuropoda melanoleuca]
Length = 377
Score = 141 bits (356), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 70/86 (81%), Positives = 75/86 (87%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 80 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 139
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 140 MTQKELEQLFSQYGRIITSRILVDQV 165
>gi|440910150|gb|ELR59976.1| ELAV-like protein 3, partial [Bos grunniens mutus]
Length = 373
Score = 141 bits (356), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 71/98 (72%), Positives = 78/98 (79%), Gaps = 2/98 (2%)
Query: 22 DAEICVFLIS--TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIK 79
D E C + T QSLGYGFVNY P DA+KAINTLNGL+LQ KTIKVSYARPSS SI+
Sbjct: 63 DIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIR 122
Query: 80 GANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNL 117
ANLYVSGLPK MSQ+E+E LFS YGRIITSRIL D +
Sbjct: 123 DANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQV 160
>gi|49355765|ref|NP_115657.2| ELAV-like protein 3 isoform 2 [Homo sapiens]
gi|119604627|gb|EAW84221.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu
antigen C), isoform CRA_b [Homo sapiens]
gi|261861050|dbj|BAI47047.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3
[synthetic construct]
gi|380783931|gb|AFE63841.1| ELAV-like protein 3 isoform 2 [Macaca mulatta]
Length = 360
Score = 141 bits (356), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 71/98 (72%), Positives = 78/98 (79%), Gaps = 2/98 (2%)
Query: 22 DAEICVFLIS--TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIK 79
D E C + T QSLGYGFVNY P DA+KAINTLNGL+LQ KTIKVSYARPSS SI+
Sbjct: 64 DIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIR 123
Query: 80 GANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNL 117
ANLYVSGLPK MSQ+E+E LFS YGRIITSRIL D +
Sbjct: 124 DANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQV 161
>gi|395850849|ref|XP_003797986.1| PREDICTED: ELAV-like protein 3 isoform 2 [Otolemur garnettii]
gi|402904299|ref|XP_003914984.1| PREDICTED: ELAV-like protein 3 isoform 2 [Papio anubis]
Length = 359
Score = 141 bits (356), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 71/98 (72%), Positives = 78/98 (79%), Gaps = 2/98 (2%)
Query: 22 DAEICVFLIS--TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIK 79
D E C + T QSLGYGFVNY P DA+KAINTLNGL+LQ KTIKVSYARPSS SI+
Sbjct: 63 DIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIR 122
Query: 80 GANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNL 117
ANLYVSGLPK MSQ+E+E LFS YGRIITSRIL D +
Sbjct: 123 DANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQV 160
>gi|117647212|ref|NP_001071119.1| ELAV-like protein 4 [Rattus norvegicus]
gi|2500581|sp|O09032.1|ELAV4_RAT RecName: Full=ELAV-like protein 4; AltName: Full=Hu-antigen D;
Short=HuD; AltName: Full=Paraneoplastic
encephalomyelitis antigen HuD
gi|1911579|gb|AAB50733.1| HuD [Rattus sp.]
gi|165970854|gb|AAI58559.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu
antigen D) [Rattus norvegicus]
Length = 373
Score = 141 bits (356), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 70/86 (81%), Positives = 75/86 (87%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 76 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 135
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 136 MTQKELEQLFSQYGRIITSRILVDQV 161
>gi|347966748|ref|XP_321180.5| AGAP001883-PA [Anopheles gambiae str. PEST]
gi|333469916|gb|EAA01735.5| AGAP001883-PA [Anopheles gambiae str. PEST]
Length = 396
Score = 141 bits (356), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 62/84 (73%), Positives = 75/84 (89%)
Query: 33 AQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHM 92
QSLGYGFVNYHRP+DAE+A+N LNGLRLQNK +KVS+ARPSSE IKGANLY+SGLPK +
Sbjct: 119 GQSLGYGFVNYHRPQDAEQAVNVLNGLRLQNKVLKVSFARPSSEGIKGANLYISGLPKTI 178
Query: 93 SQQELESLFSPYGRIITSRILCDN 116
+Q+ELE++F PYG IITSR+L +
Sbjct: 179 TQEELETIFRPYGEIITSRVLIQD 202
>gi|444729824|gb|ELW70227.1| ELAV-like protein 2 [Tupaia chinensis]
Length = 353
Score = 141 bits (356), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 70/87 (80%), Positives = 75/87 (86%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
S QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 68 SIGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPK 127
Query: 91 HMSQQELESLFSPYGRIITSRILCDNL 117
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 128 TMTQKELEQLFSQYGRIITSRILVDQV 154
>gi|301771944|ref|XP_002921434.1| PREDICTED: ELAV-like protein 3-like [Ailuropoda melanoleuca]
Length = 350
Score = 141 bits (356), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 71/98 (72%), Positives = 78/98 (79%), Gaps = 2/98 (2%)
Query: 22 DAEICVFLIS--TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIK 79
D E C + T QSLGYGFVNY P DA+KAINTLNGL+LQ KTIKVSYARPSS SI+
Sbjct: 67 DIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIR 126
Query: 80 GANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNL 117
ANLYVSGLPK MSQ+E+E LFS YGRIITSRIL D +
Sbjct: 127 DANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQV 164
>gi|338727192|ref|XP_001916382.2| PREDICTED: LOW QUALITY PROTEIN: ELAV-like protein 3-like [Equus
caballus]
Length = 345
Score = 141 bits (355), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 71/98 (72%), Positives = 78/98 (79%), Gaps = 2/98 (2%)
Query: 22 DAEICVFLIS--TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIK 79
D E C + T QSLGYGFVNY P DA+KAINTLNGL+LQ KTIKVSYARPSS SI+
Sbjct: 67 DIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIR 126
Query: 80 GANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNL 117
ANLYVSGLPK MSQ+E+E LFS YGRIITSRIL D +
Sbjct: 127 DANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQV 164
>gi|426387255|ref|XP_004060089.1| PREDICTED: ELAV-like protein 3 isoform 3 [Gorilla gorilla gorilla]
Length = 346
Score = 141 bits (355), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 71/98 (72%), Positives = 78/98 (79%), Gaps = 2/98 (2%)
Query: 22 DAEICVFLIS--TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIK 79
D E C + T QSLGYGFVNY P DA+KAINTLNGL+LQ KTIKVSYARPSS SI+
Sbjct: 56 DIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIR 115
Query: 80 GANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNL 117
ANLYVSGLPK MSQ+E+E LFS YGRIITSRIL D +
Sbjct: 116 DANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQV 153
>gi|344283287|ref|XP_003413403.1| PREDICTED: ELAV-like protein 3 [Loxodonta africana]
Length = 360
Score = 141 bits (355), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 71/98 (72%), Positives = 78/98 (79%), Gaps = 2/98 (2%)
Query: 22 DAEICVFLIS--TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIK 79
D E C + T QSLGYGFVNY P DA+KAINTLNGL+LQ KTIKVSYARPSS SI+
Sbjct: 64 DIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIR 123
Query: 80 GANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNL 117
ANLYVSGLPK MSQ+E+E LFS YGRIITSRIL D +
Sbjct: 124 DANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQV 161
>gi|49355761|ref|NP_001411.2| ELAV-like protein 3 isoform 1 [Homo sapiens]
gi|21264436|sp|Q14576.3|ELAV3_HUMAN RecName: Full=ELAV-like protein 3; AltName: Full=Hu-antigen C;
Short=HuC; AltName: Full=Paraneoplastic cerebellar
degeneration-associated antigen; AltName:
Full=Paraneoplastic limbic encephalitis antigen 21
gi|119604626|gb|EAW84220.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu
antigen C), isoform CRA_a [Homo sapiens]
gi|380783929|gb|AFE63840.1| ELAV-like protein 3 isoform 1 [Macaca mulatta]
Length = 367
Score = 141 bits (355), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 71/98 (72%), Positives = 78/98 (79%), Gaps = 2/98 (2%)
Query: 22 DAEICVFLIS--TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIK 79
D E C + T QSLGYGFVNY P DA+KAINTLNGL+LQ KTIKVSYARPSS SI+
Sbjct: 64 DIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIR 123
Query: 80 GANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNL 117
ANLYVSGLPK MSQ+E+E LFS YGRIITSRIL D +
Sbjct: 124 DANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQV 161
>gi|410967448|ref|XP_003990231.1| PREDICTED: ELAV-like protein 4 [Felis catus]
Length = 494
Score = 141 bits (355), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 70/86 (81%), Positives = 75/86 (87%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 100 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 159
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 160 MTQKELEQLFSQYGRIITSRILVDQV 185
Score = 35.4 bits (80), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 35/71 (49%)
Query: 54 NTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRIL 113
NT NG N+ ++ NL V+ LP++M+Q+E SLF G I + +++
Sbjct: 36 NTSNGPSSNNRNCPSPMQTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLV 95
Query: 114 CDNLATENGKY 124
D + ++ Y
Sbjct: 96 RDKITGQSLGY 106
>gi|403302354|ref|XP_003941825.1| PREDICTED: ELAV-like protein 3 isoform 1 [Saimiri boliviensis
boliviensis]
Length = 352
Score = 141 bits (355), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 71/98 (72%), Positives = 78/98 (79%), Gaps = 2/98 (2%)
Query: 22 DAEICVFLIS--TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIK 79
D E C + T QSLGYGFVNY P DA+KAINTLNGL+LQ KTIKVSYARPSS SI+
Sbjct: 56 DIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIR 115
Query: 80 GANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNL 117
ANLYVSGLPK MSQ+E+E LFS YGRIITSRIL D +
Sbjct: 116 DANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQV 153
>gi|426387251|ref|XP_004060087.1| PREDICTED: ELAV-like protein 3 isoform 1 [Gorilla gorilla gorilla]
gi|355703162|gb|EHH29653.1| Hu-antigen C [Macaca mulatta]
Length = 339
Score = 141 bits (355), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 71/98 (72%), Positives = 78/98 (79%), Gaps = 2/98 (2%)
Query: 22 DAEICVFLIS--TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIK 79
D E C + T QSLGYGFVNY P DA+KAINTLNGL+LQ KTIKVSYARPSS SI+
Sbjct: 56 DIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIR 115
Query: 80 GANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNL 117
ANLYVSGLPK MSQ+E+E LFS YGRIITSRIL D +
Sbjct: 116 DANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQV 153
>gi|281337375|gb|EFB12959.1| hypothetical protein PANDA_010283 [Ailuropoda melanoleuca]
Length = 369
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 71/98 (72%), Positives = 78/98 (79%), Gaps = 2/98 (2%)
Query: 22 DAEICVFLIS--TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIK 79
D E C + T QSLGYGFVNY P DA+KAINTLNGL+LQ KTIKVSYARPSS SI+
Sbjct: 61 DIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIR 120
Query: 80 GANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNL 117
ANLYVSGLPK MSQ+E+E LFS YGRIITSRIL D +
Sbjct: 121 DANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQV 158
>gi|149020435|gb|EDL78240.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu
antigen C), isoform CRA_a [Rattus norvegicus]
Length = 251
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 71/98 (72%), Positives = 77/98 (78%), Gaps = 2/98 (2%)
Query: 20 FSDAEICVFLIS--TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSES 77
D E C + T QSLGYGFVNY P DA+KAINTLNGL+LQ KTIKVSYARPSS S
Sbjct: 62 IGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSAS 121
Query: 78 IKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
I+ ANLYVSGLPK MSQ+E+E LFS YGRIITSRIL D
Sbjct: 122 IRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLD 159
>gi|426387253|ref|XP_004060088.1| PREDICTED: ELAV-like protein 3 isoform 2 [Gorilla gorilla gorilla]
Length = 366
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 71/98 (72%), Positives = 78/98 (79%), Gaps = 2/98 (2%)
Query: 22 DAEICVFLIS--TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIK 79
D E C + T QSLGYGFVNY P DA+KAINTLNGL+LQ KTIKVSYARPSS SI+
Sbjct: 56 DIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIR 115
Query: 80 GANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNL 117
ANLYVSGLPK MSQ+E+E LFS YGRIITSRIL D +
Sbjct: 116 DANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQV 153
>gi|148693298|gb|EDL25245.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu
antigen C), isoform CRA_b [Mus musculus]
Length = 250
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 71/98 (72%), Positives = 77/98 (78%), Gaps = 2/98 (2%)
Query: 20 FSDAEICVFLIS--TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSES 77
D E C + T QSLGYGFVNY P DA+KAINTLNGL+LQ KTIKVSYARPSS S
Sbjct: 61 IGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSAS 120
Query: 78 IKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
I+ ANLYVSGLPK MSQ+E+E LFS YGRIITSRIL D
Sbjct: 121 IRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLD 158
>gi|148236291|ref|NP_001081613.1| ELAV (embryonic lethal, abnormal vision)-like 2 (Hu antigen B)
[Xenopus laevis]
gi|728726|emb|CAA59430.1| Xel-1 [Xenopus laevis]
Length = 389
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 69/88 (78%), Positives = 76/88 (86%)
Query: 30 ISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLP 89
I+ QSLGYGFVNY P+DAEKAINT+NGLRLQ KTIKVSYARPSS SI+ ANLYVSGLP
Sbjct: 102 ITEGQSLGYGFVNYIDPKDAEKAINTVNGLRLQTKTIKVSYARPSSASIRDANLYVSGLP 161
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNL 117
K M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 162 KTMTQKELEQLFSQYGRIITSRILVDQV 189
>gi|358412972|ref|XP_887465.4| PREDICTED: ELAV-like protein 3 isoform 8 [Bos taurus]
Length = 511
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 71/98 (72%), Positives = 78/98 (79%), Gaps = 2/98 (2%)
Query: 22 DAEICVFLIS--TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIK 79
D E C + T QSLGYGFVNY P DA+KAINTLNGL+LQ KTIKVSYARPSS SI+
Sbjct: 215 DIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIR 274
Query: 80 GANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNL 117
ANLYVSGLPK MSQ+E+E LFS YGRIITSRIL D +
Sbjct: 275 DANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQV 312
>gi|351694381|gb|EHA97299.1| ELAV-like protein 3, partial [Heterocephalus glaber]
Length = 344
Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 71/98 (72%), Positives = 78/98 (79%), Gaps = 2/98 (2%)
Query: 22 DAEICVFLIS--TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIK 79
D E C + T QSLGYGFVNY P DA+KAINTLNGL+LQ KTIKVSYARPSS SI+
Sbjct: 61 DIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIR 120
Query: 80 GANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNL 117
ANLYVSGLPK MSQ+E+E LFS YGRIITSRIL D +
Sbjct: 121 DANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQV 158
>gi|395530250|ref|XP_003767210.1| PREDICTED: ELAV-like protein 4 [Sarcophilus harrisii]
Length = 707
Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 70/86 (81%), Positives = 75/86 (87%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 424 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 483
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 484 MTQKELEQLFSQYGRIITSRILVDQV 509
>gi|15021899|dbj|BAB62225.1| Hu/elav class neuron-specific RNA binding protein [Branchiostoma
belcheri]
Length = 326
Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 68/84 (80%), Positives = 75/84 (89%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY +P+DAEKAINTLNGLRLQ KTIKVSYARPSS++IK ANLYVSGLPK
Sbjct: 60 TGQSLGYGFVNYVKPQDAEKAINTLNGLRLQAKTIKVSYARPSSQAIKDANLYVSGLPKT 119
Query: 92 MSQQELESLFSPYGRIITSRILCD 115
M+QQ+LE LF +GRIITSRIL D
Sbjct: 120 MTQQDLEGLFEAHGRIITSRILFD 143
>gi|354475185|ref|XP_003499810.1| PREDICTED: ELAV-like protein 3 [Cricetulus griseus]
Length = 359
Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 71/96 (73%), Positives = 77/96 (80%), Gaps = 2/96 (2%)
Query: 22 DAEICVFLIS--TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIK 79
D E C + T QSLGYGFVNY P DA+KAINTLNGL+LQ KTIKVSYARPSS SI+
Sbjct: 63 DIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIR 122
Query: 80 GANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
ANLYVSGLPK MSQ+E+E LFS YGRIITSRIL D
Sbjct: 123 DANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLD 158
>gi|27229298|ref|NP_758827.1| ELAV-like protein 3 [Rattus norvegicus]
gi|34328053|ref|NP_034617.1| ELAV-like protein 3 [Mus musculus]
gi|3913870|sp|Q60900.1|ELAV3_MOUSE RecName: Full=ELAV-like protein 3; AltName: Full=Hu-antigen C;
Short=HuC
gi|1146120|gb|AAC52999.1| mHuC-L [Mus musculus]
gi|26006109|dbj|BAC41352.1| HuC [Rattus norvegicus]
gi|30354162|gb|AAH52097.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu
antigen C) [Mus musculus]
gi|148693297|gb|EDL25244.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu
antigen C), isoform CRA_a [Mus musculus]
gi|149020436|gb|EDL78241.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu
antigen C), isoform CRA_b [Rattus norvegicus]
Length = 367
Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 71/96 (73%), Positives = 77/96 (80%), Gaps = 2/96 (2%)
Query: 22 DAEICVFLIS--TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIK 79
D E C + T QSLGYGFVNY P DA+KAINTLNGL+LQ KTIKVSYARPSS SI+
Sbjct: 64 DIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIR 123
Query: 80 GANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
ANLYVSGLPK MSQ+E+E LFS YGRIITSRIL D
Sbjct: 124 DANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLD 159
>gi|260821286|ref|XP_002605964.1| hypothetical protein BRAFLDRAFT_92208 [Branchiostoma floridae]
gi|229291301|gb|EEN61974.1| hypothetical protein BRAFLDRAFT_92208 [Branchiostoma floridae]
Length = 330
Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 68/84 (80%), Positives = 75/84 (89%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY +P+DAEKAINTLNGLRLQ KTIKVSYARPSS++IK ANLYVSGLPK
Sbjct: 64 TGQSLGYGFVNYVKPQDAEKAINTLNGLRLQAKTIKVSYARPSSQAIKDANLYVSGLPKT 123
Query: 92 MSQQELESLFSPYGRIITSRILCD 115
M+QQ+LE LF +GRIITSRIL D
Sbjct: 124 MTQQDLEGLFEAHGRIITSRILFD 147
>gi|147901954|ref|NP_001080909.1| ELAV-like protein 4 [Xenopus laevis]
gi|82240321|sp|Q7SZT7.1|ELAV4_XENLA RecName: Full=ELAV-like protein 4; AltName: Full=Protein ElrD
gi|33585950|gb|AAH56021.1| ElrD protein [Xenopus laevis]
Length = 400
Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 69/90 (76%), Positives = 75/90 (83%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGL 88
+ QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGL
Sbjct: 114 IFGKGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGL 173
Query: 89 PKHMSQQELESLFSPYGRIITSRILCDNLA 118
PK M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 174 PKTMTQKELEQLFSQYGRIITSRILVDQVT 203
>gi|156717966|ref|NP_001096525.1| ELAV-like protein 4 [Xenopus (Silurana) tropicalis]
gi|288561889|sp|A4QNI8.1|ELAV4_XENTR RecName: Full=ELAV-like protein 4; AltName: Full=Protein ElrD
gi|138519953|gb|AAI35737.1| LOC100125165 protein [Xenopus (Silurana) tropicalis]
Length = 400
Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 69/90 (76%), Positives = 75/90 (83%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGL 88
+ QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGL
Sbjct: 114 IFGKGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGL 173
Query: 89 PKHMSQQELESLFSPYGRIITSRILCDNLA 118
PK M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 174 PKTMTQKELEQLFSQYGRIITSRILVDQVT 203
>gi|27696830|gb|AAH43735.1| ElrD protein [Xenopus laevis]
Length = 395
Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 69/90 (76%), Positives = 75/90 (83%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGL 88
+ QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGL
Sbjct: 109 IFGKGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGL 168
Query: 89 PKHMSQQELESLFSPYGRIITSRILCDNLA 118
PK M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 169 PKTMTQKELEQLFSQYGRIITSRILVDQVT 198
>gi|344240064|gb|EGV96167.1| ELAV-like protein 3 [Cricetulus griseus]
Length = 352
Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 71/96 (73%), Positives = 77/96 (80%), Gaps = 2/96 (2%)
Query: 22 DAEICVFLIS--TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIK 79
D E C + T QSLGYGFVNY P DA+KAINTLNGL+LQ KTIKVSYARPSS SI+
Sbjct: 56 DIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIR 115
Query: 80 GANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
ANLYVSGLPK MSQ+E+E LFS YGRIITSRIL D
Sbjct: 116 DANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLD 151
>gi|12851808|dbj|BAB29173.1| unnamed protein product [Mus musculus]
Length = 371
Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 70/87 (80%), Positives = 74/87 (85%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 88 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 147
Query: 92 MSQQELESLFSPYGRIITSRILCDNLA 118
M Q+ELE LFS YGRIITSRIL D +
Sbjct: 148 MIQKELEQLFSQYGRIITSRILVDQVT 174
>gi|395512536|ref|XP_003775304.1| PREDICTED: LOW QUALITY PROTEIN: ELAV-like protein 3 [Sarcophilus
harrisii]
Length = 287
Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 68/86 (79%), Positives = 74/86 (86%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P DA+KAINTLNGL+LQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 78 TGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKT 137
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
MSQ+E+E LFS YGRIITSRIL D +
Sbjct: 138 MSQKEMEQLFSQYGRIITSRILVDQV 163
>gi|345787182|ref|XP_542056.3| PREDICTED: ELAV-like protein 3 [Canis lupus familiaris]
Length = 647
Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats.
Identities = 68/86 (79%), Positives = 74/86 (86%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P DA+KAINTLNGL+LQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 363 TGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKT 422
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
MSQ+E+E LFS YGRIITSRIL D +
Sbjct: 423 MSQKEMEQLFSQYGRIITSRILVDQV 448
>gi|348509181|ref|XP_003442130.1| PREDICTED: ELAV-like protein 3-like isoform 1 [Oreochromis
niloticus]
gi|410902663|ref|XP_003964813.1| PREDICTED: ELAV-like protein 3-like isoform 1 [Takifugu rubripes]
gi|432868072|ref|XP_004071397.1| PREDICTED: ELAV-like protein 3-like isoform 1 [Oryzias latipes]
Length = 345
Score = 139 bits (350), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 67/86 (77%), Positives = 74/86 (86%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P DA+KAINTLNGL+LQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 75 TGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKT 134
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
MSQ+++E LFS YGRIITSRIL D +
Sbjct: 135 MSQKDMEQLFSQYGRIITSRILVDQV 160
>gi|40807107|gb|AAH65343.1| Elavl3 protein [Danio rerio]
Length = 359
Score = 139 bits (350), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 67/86 (77%), Positives = 74/86 (86%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P DA+KAINTLNGL+LQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 75 TGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKT 134
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
MSQ+++E LFS YGRIITSRIL D +
Sbjct: 135 MSQKDMEQLFSQYGRIITSRILVDQV 160
>gi|432868074|ref|XP_004071398.1| PREDICTED: ELAV-like protein 3-like isoform 2 [Oryzias latipes]
Length = 359
Score = 139 bits (350), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 67/86 (77%), Positives = 74/86 (86%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P DA+KAINTLNGL+LQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 75 TGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKT 134
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
MSQ+++E LFS YGRIITSRIL D +
Sbjct: 135 MSQKDMEQLFSQYGRIITSRILVDQV 160
>gi|410902665|ref|XP_003964814.1| PREDICTED: ELAV-like protein 3-like isoform 2 [Takifugu rubripes]
Length = 358
Score = 139 bits (350), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 67/86 (77%), Positives = 74/86 (86%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P DA+KAINTLNGL+LQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 75 TGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKT 134
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
MSQ+++E LFS YGRIITSRIL D +
Sbjct: 135 MSQKDMEQLFSQYGRIITSRILVDQV 160
>gi|348509183|ref|XP_003442131.1| PREDICTED: ELAV-like protein 3-like isoform 2 [Oreochromis
niloticus]
Length = 359
Score = 139 bits (350), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 67/86 (77%), Positives = 74/86 (86%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P DA+KAINTLNGL+LQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 75 TGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKT 134
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
MSQ+++E LFS YGRIITSRIL D +
Sbjct: 135 MSQKDMEQLFSQYGRIITSRILVDQV 160
>gi|18463972|gb|AAL73053.1| HUC [Sphoeroides nephelus]
Length = 356
Score = 139 bits (350), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 67/86 (77%), Positives = 74/86 (86%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P DA+KAINTLNGL+LQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 73 TGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKT 132
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
MSQ+++E LFS YGRIITSRIL D +
Sbjct: 133 MSQKDMEQLFSQYGRIITSRILVDQV 158
>gi|226875175|gb|ACO88935.1| Elav [Octopus bimaculoides]
Length = 283
Score = 139 bits (350), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 73/96 (76%), Positives = 77/96 (80%), Gaps = 7/96 (7%)
Query: 21 SDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKG 80
+DAE C QSLGYGFVNY P DAEKAINTLNGLRLQNKTIKVSYARPSSESIKG
Sbjct: 69 TDAEKC-------QSLGYGFVNYKYPSDAEKAINTLNGLRLQNKTIKVSYARPSSESIKG 121
Query: 81 ANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
ANLY+SGLPK +Q +LE LFS G IITSRIL DN
Sbjct: 122 ANLYISGLPKSFTQLDLEKLFSQCGFIITSRILYDN 157
>gi|47220048|emb|CAG12196.1| unnamed protein product [Tetraodon nigroviridis]
Length = 363
Score = 139 bits (350), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 67/86 (77%), Positives = 74/86 (86%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P DA+KAINTLNGL+LQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 73 TGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKT 132
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
MSQ+++E LFS YGRIITSRIL D +
Sbjct: 133 MSQKDMEQLFSQYGRIITSRILVDQV 158
>gi|23271926|gb|AAH36071.1| ELAVL4 protein [Homo sapiens]
Length = 366
Score = 139 bits (350), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 69/83 (83%), Positives = 73/83 (87%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 83 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 142
Query: 92 MSQQELESLFSPYGRIITSRILC 114
M+Q+ELE LFS YGRIITSRIL
Sbjct: 143 MTQKELEQLFSQYGRIITSRILV 165
>gi|444525484|gb|ELV14031.1| ELAV-like protein 3 [Tupaia chinensis]
Length = 332
Score = 139 bits (349), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 70/98 (71%), Positives = 78/98 (79%), Gaps = 2/98 (2%)
Query: 22 DAEICVFLIS--TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIK 79
D E C + T QSLGYGFVNY P DA+KAI+TLNGL+LQ KTIKVSYARPSS SI+
Sbjct: 56 DIESCKLVRDKITGQSLGYGFVNYSDPNDADKAISTLNGLKLQTKTIKVSYARPSSASIR 115
Query: 80 GANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNL 117
ANLYVSGLPK MSQ+E+E LFS YGRIITSRIL D +
Sbjct: 116 DANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQV 153
>gi|408358348|gb|AFU54936.1| ELAV-like protein 4, partial [Trachemys scripta elegans]
Length = 202
Score = 138 bits (347), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 68/83 (81%), Positives = 73/83 (87%)
Query: 35 SLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQ 94
SLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK M+Q
Sbjct: 1 SLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQ 60
Query: 95 QELESLFSPYGRIITSRILCDNL 117
+ELE LFS YGRIITSRIL D +
Sbjct: 61 KELEQLFSQYGRIITSRILVDQV 83
>gi|431093|gb|AAA58677.1| huc [Homo sapiens]
Length = 359
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 69/98 (70%), Positives = 77/98 (78%), Gaps = 2/98 (2%)
Query: 22 DAEICVFLIS--TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIK 79
D E C + T + LGYGFVNY P DA+KAINTLNGL+LQ KTIKVSYARPSS SI+
Sbjct: 64 DIESCKLVRDKITGRDLGYGFVNYPDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIR 123
Query: 80 GANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNL 117
ANLYVSGLPK MSQ+E+E LFS YGRIITSRIL D +
Sbjct: 124 DANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQV 161
>gi|14585790|gb|AAK67714.1| HUC [Homo sapiens]
Length = 360
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 69/98 (70%), Positives = 77/98 (78%), Gaps = 2/98 (2%)
Query: 22 DAEICVFLIS--TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIK 79
D E C + T + LGYGFVNY P DA+KAINTLNGL+LQ KTIKVSYARPSS SI+
Sbjct: 64 DIESCKLVRDKITGRDLGYGFVNYPDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIR 123
Query: 80 GANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNL 117
ANLYVSGLPK MSQ+E+E LFS YGRIITSRIL D +
Sbjct: 124 DANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQV 161
>gi|443724444|gb|ELU12456.1| hypothetical protein CAPTEDRAFT_172701 [Capitella teleta]
Length = 359
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 66/85 (77%), Positives = 75/85 (88%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T QSLGYGFVNY R EDA KAI +LNGLRLQNKTIKVS ARPSSESIKGANLY+SGLPK
Sbjct: 64 ATGQSLGYGFVNYKRQEDASKAITSLNGLRLQNKTIKVSVARPSSESIKGANLYISGLPK 123
Query: 91 HMSQQELESLFSPYGRIITSRILCD 115
+M+Q +LE++F+ G IITSRILCD
Sbjct: 124 NMTQVDLENMFNHCGNIITSRILCD 148
>gi|18858615|ref|NP_571524.1| ELAV-like protein 3 [Danio rerio]
gi|1683635|gb|AAB36515.1| zHuC [Danio rerio]
Length = 345
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 66/86 (76%), Positives = 74/86 (86%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P DA+KAINTLNGL+LQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 75 TGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKT 134
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
MSQ+++E LFS YGRIITSRIL + +
Sbjct: 135 MSQKDMEQLFSQYGRIITSRILVNQV 160
>gi|327264130|ref|XP_003216869.1| PREDICTED: ELAV-like protein 3-like [Anolis carolinensis]
Length = 386
Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/86 (77%), Positives = 73/86 (84%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY DA+KAINTLNGL+LQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 102 TGQSLGYGFVNYVDSNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKT 161
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
MSQ+E+E LFS YGRIITSRIL D +
Sbjct: 162 MSQKEMEQLFSQYGRIITSRILVDQV 187
>gi|71896483|ref|NP_001025497.1| ELAV-like protein 3 [Xenopus (Silurana) tropicalis]
gi|123913100|sp|Q28FX0.1|ELAV3_XENTR RecName: Full=ELAV-like protein 3; AltName: Full=Protein ElrC
gi|89266725|emb|CAJ83874.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu
antigen C) [Xenopus (Silurana) tropicalis]
Length = 343
Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 69/98 (70%), Positives = 77/98 (78%), Gaps = 3/98 (3%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P DA+KAINTLNGL+LQ KTIKVSYARPSS SI+ ANLYVS LPK
Sbjct: 72 TGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSSLPKT 131
Query: 92 MSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLG 129
M+Q+E+E LFS YGRIITSRIL D + G G+G
Sbjct: 132 MNQKEMEQLFSQYGRIITSRILVDQVT---GSVSRGVG 166
>gi|134026264|gb|AAI36135.1| ELAV (embryonic lethal, abnormal vision)-like 3 (Hu antigen C)
[Xenopus (Silurana) tropicalis]
Length = 342
Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 66/86 (76%), Positives = 73/86 (84%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P DA+KAINTLNGL+LQ KTIKVSYARPSS SI+ ANLYVS LPK
Sbjct: 72 TGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSSLPKT 131
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+Q+E+E LFS YGRIITSRIL D +
Sbjct: 132 MNQKEMEQLFSQYGRIITSRILVDQV 157
>gi|213623456|gb|AAI69769.1| ElrC protein [Xenopus laevis]
Length = 341
Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 66/86 (76%), Positives = 73/86 (84%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P DA+KAINTLNGL+LQ KTIKVSYARPSS SI+ ANLYVS LPK
Sbjct: 71 TGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSSLPKT 130
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+Q+E+E LFS YGRIITSRIL D +
Sbjct: 131 MNQKEMEQLFSQYGRIITSRILVDQV 156
>gi|157118056|ref|XP_001658986.1| hypothetical protein AaeL_AAEL008164 [Aedes aegypti]
gi|108875838|gb|EAT40063.1| AAEL008164-PA [Aedes aegypti]
Length = 363
Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 60/81 (74%), Positives = 73/81 (90%)
Query: 34 QSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMS 93
QSLGYGFVN+HR +DAE+A+N LNGLRLQNK +KVS+ARPSSE IKGANLY+SGLPK ++
Sbjct: 80 QSLGYGFVNFHRSQDAEQAVNVLNGLRLQNKVLKVSFARPSSEGIKGANLYISGLPKTIT 139
Query: 94 QQELESLFSPYGRIITSRILC 114
Q+ELE++F PYG IITSR+L
Sbjct: 140 QEELETIFRPYGEIITSRVLV 160
>gi|259013331|ref|NP_001158376.1| Hu/elav protein [Saccoglossus kowalevskii]
gi|32307761|gb|AAP79277.1| Hu/elav [Saccoglossus kowalevskii]
Length = 357
Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 64/84 (76%), Positives = 74/84 (88%)
Query: 34 QSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMS 93
QSLGY FVNYH+ DAEKAINTLNGLRLQ KTIKVSYARPSS++IK ANLYV GLPK M+
Sbjct: 91 QSLGYAFVNYHKAADAEKAINTLNGLRLQAKTIKVSYARPSSQAIKDANLYVCGLPKTMA 150
Query: 94 QQELESLFSPYGRIITSRILCDNL 117
Q++LE +F+ GRIITSRILCD++
Sbjct: 151 QKDLEEMFTSCGRIITSRILCDSV 174
>gi|148224170|ref|NP_001084080.1| ELAV-like protein 3 [Xenopus laevis]
gi|82245647|sp|Q91584.1|ELAV3_XENLA RecName: Full=ELAV-like protein 3; AltName: Full=Protein ElrC
gi|608541|gb|AAA96944.1| ribonucleoprotein [Xenopus laevis]
Length = 348
Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 66/86 (76%), Positives = 73/86 (84%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P DA+KAINTLNGL+LQ KTIKVSYARPSS SI+ ANLYVS LPK
Sbjct: 71 TGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSSLPKT 130
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+Q+E+E LFS YGRIITSRIL D +
Sbjct: 131 MNQKEMEQLFSQYGRIITSRILVDQV 156
>gi|170044495|ref|XP_001849881.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167867621|gb|EDS31004.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 393
Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 60/84 (71%), Positives = 73/84 (86%)
Query: 33 AQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHM 92
QSLGYGFVN+HR +DAE+A+N LNGLRLQNK +KVS+ARPSSE IKGANLY+SGLPK +
Sbjct: 115 GQSLGYGFVNFHRSQDAEQAVNVLNGLRLQNKVLKVSFARPSSEGIKGANLYISGLPKTI 174
Query: 93 SQQELESLFSPYGRIITSRILCDN 116
+Q+ELE +F PYG IITSR+L +
Sbjct: 175 TQEELEIIFRPYGEIITSRVLVQD 198
>gi|17532863|ref|NP_496057.1| Protein EXC-7 [Caenorhabditis elegans]
gi|3876753|emb|CAA85327.1| Protein EXC-7 [Caenorhabditis elegans]
Length = 456
Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 62/86 (72%), Positives = 75/86 (87%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY R EDA +A+++ NGLRLQNKTIKVSYARPS++ IKG+NLYVSG+PK
Sbjct: 79 TGQSLGYGFVNYVREEDALRAVSSFNGLRLQNKTIKVSYARPSNDQIKGSNLYVSGIPKS 138
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+ ELES+F P+G+IITSRIL DN+
Sbjct: 139 MTLHELESIFRPFGQIITSRILSDNV 164
>gi|449514035|ref|XP_002190678.2| PREDICTED: ELAV-like protein 2-like [Taeniopygia guttata]
Length = 380
Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 65/86 (75%), Positives = 71/86 (82%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T SLGYGFVNY P+DA+KA+NTLNG RLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 104 TGPSLGYGFVNYVDPKDAKKAVNTLNGFRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 163
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+Q ELE LFS YG IITSRIL D +
Sbjct: 164 MTQTELEQLFSQYGHIITSRILVDQV 189
>gi|45382281|ref|NP_990163.1| RNA-binding protein HuC [Gallus gallus]
gi|5738251|gb|AAD50314.1|AF176674_1 RNA-binding protein HuC [Gallus gallus]
Length = 365
Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 68/98 (69%), Positives = 76/98 (77%), Gaps = 2/98 (2%)
Query: 22 DAEICVFLIS--TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIK 79
D E C + T QSLGYGFVNY DA+KAI+TLNGL+LQ KTIKVSYARPSS SI+
Sbjct: 75 DIESCKLVRDKVTGQSLGYGFVNYVEAGDADKAISTLNGLKLQTKTIKVSYARPSSASIR 134
Query: 80 GANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNL 117
ANLYVSGLPK M Q+E+E LFS YGRIITSRIL D +
Sbjct: 135 DANLYVSGLPKAMGQKEMEQLFSQYGRIITSRILVDQV 172
>gi|268529184|ref|XP_002629718.1| C. briggsae CBR-EXC-7 protein [Caenorhabditis briggsae]
Length = 456
Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 61/86 (70%), Positives = 74/86 (86%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY R EDA +A+++ NGLRLQNKTIKVSYARPS++ IKG+NLYVSG+PK
Sbjct: 82 TGQSLGYGFVNYVREEDALRAVSSFNGLRLQNKTIKVSYARPSNDQIKGSNLYVSGIPKS 141
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+ ELE +F P+G+IITSRIL DN+
Sbjct: 142 MTLHELEGIFRPFGQIITSRILSDNV 167
>gi|348510833|ref|XP_003442949.1| PREDICTED: ELAV-like protein 1-like [Oreochromis niloticus]
Length = 341
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 60/84 (71%), Positives = 73/84 (86%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
SLGYGFVNY P DAE+AI+TLNGLRLQ+KTIKVSYARPSS++IK ANLY+SGLPK+
Sbjct: 72 AGHSLGYGFVNYLNPSDAERAISTLNGLRLQSKTIKVSYARPSSDTIKDANLYISGLPKN 131
Query: 92 MSQQELESLFSPYGRIITSRILCD 115
M+Q+++E +FS YGRII SR+L D
Sbjct: 132 MTQKDVEDMFSRYGRIINSRVLVD 155
Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 27/37 (72%)
Query: 82 NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLA 118
NL V+ LP++M+Q EL SLFS G + +++++ D +A
Sbjct: 36 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVA 72
>gi|209155462|gb|ACI33963.1| ELAV-like protein 1 [Salmo salar]
Length = 342
Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 60/84 (71%), Positives = 72/84 (85%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
SLGYGFVNY P DAE+AINTLNGLRLQ+KTIKVSYARPSS++IK ANLY+SGLPK
Sbjct: 73 AGHSLGYGFVNYLTPSDAERAINTLNGLRLQSKTIKVSYARPSSDTIKDANLYISGLPKT 132
Query: 92 MSQQELESLFSPYGRIITSRILCD 115
M+Q+++E +F+ YGRII SR+L D
Sbjct: 133 MTQKDVEDMFARYGRIINSRVLVD 156
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 26/37 (70%)
Query: 82 NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLA 118
NL V+ LP+ MSQ EL SLFS G + +++++ D +A
Sbjct: 37 NLIVNYLPQSMSQDELRSLFSSIGEVESAKLIRDKVA 73
Score = 35.0 bits (79), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 30 ISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY 70
+T + G+GFV E+A AI +LNG RL +K ++VS+
Sbjct: 295 FNTNKCKGFGFVTMTNYEEAAMAIGSLNGYRLGDKILQVSF 335
>gi|349931692|dbj|GAA40288.1| ELAV like protein 2/3/4 [Clonorchis sinensis]
Length = 941
Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 72/115 (62%), Positives = 81/115 (70%), Gaps = 5/115 (4%)
Query: 7 LNKLFTYEKVHLGFS---DAEICVFL--ISTAQSLGYGFVNYHRPEDAEKAINTLNGLRL 61
L + E+V FS + E C + +T +SLGY FV Y R DAEKAI TLNGLRL
Sbjct: 369 LPPFMSQEEVKALFSSIGEVESCKLVREKATGESLGYAFVKYIRAADAEKAIRTLNGLRL 428
Query: 62 QNKTIKVSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
QNKTIKVS ARPSSESIKGANLY+ GLPK M+Q ELE LF GRIIT+RIL DN
Sbjct: 429 QNKTIKVSLARPSSESIKGANLYICGLPKKMTQTELEDLFKQCGRIITARILYDN 483
>gi|432936678|ref|XP_004082225.1| PREDICTED: ELAV-like protein 1-like [Oryzias latipes]
Length = 342
Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 60/84 (71%), Positives = 73/84 (86%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
SLGYGFVNY P DAE+AI+TLNGLRLQ+KTIKVSYARPSS++IK ANLY+SGLPK+
Sbjct: 73 AGHSLGYGFVNYLNPSDAERAISTLNGLRLQSKTIKVSYARPSSDTIKDANLYISGLPKN 132
Query: 92 MSQQELESLFSPYGRIITSRILCD 115
M+Q+++E +FS YGRII SR+L D
Sbjct: 133 MTQKDVEDMFSCYGRIINSRVLVD 156
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 26/37 (70%)
Query: 82 NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLA 118
NL V+ LP+ MSQ EL SLFS G + +++++ D +A
Sbjct: 37 NLIVNYLPQSMSQDELRSLFSSIGEVESAKLIRDKVA 73
>gi|305855162|ref|NP_001182263.1| ELAV-like protein 1 [Sus scrofa]
gi|285818484|gb|ADC38915.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 [Sus
scrofa]
gi|456753432|gb|JAA74168.1| ELAV-like 1 (Hu antigen R) [Sus scrofa]
Length = 326
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 60/84 (71%), Positives = 72/84 (85%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
SLGYGFVNY +DAE+AINTLNGLRLQ+KTIKVSYARPSSE IK ANLY+SGLP+
Sbjct: 57 AGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRT 116
Query: 92 MSQQELESLFSPYGRIITSRILCD 115
M+Q+++E +FSP+GRII SR+L D
Sbjct: 117 MTQKDVEDMFSPFGRIINSRVLVD 140
Score = 38.9 bits (89), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 31/48 (64%)
Query: 71 ARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLA 118
A + I NL V+ LP++M+Q+EL SLFS G I +++++ D +A
Sbjct: 10 AEDCRDDIGRTNLIVNYLPQNMTQEELRSLFSSIGEIESAKLIRDKVA 57
>gi|341901304|gb|EGT57239.1| CBN-EXC-7 protein [Caenorhabditis brenneri]
Length = 459
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 60/86 (69%), Positives = 74/86 (86%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY + DA +A+++ NGLRLQNKTIKVSYARPS++ IKG+NLYVSG+PK
Sbjct: 79 TGQSLGYGFVNYVQEADALRAVSSFNGLRLQNKTIKVSYARPSNDQIKGSNLYVSGIPKS 138
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+ ELES+F P+G+IITSRIL DN+
Sbjct: 139 MTLHELESIFRPFGQIITSRILSDNV 164
>gi|18858877|ref|NP_570984.1| ELAV-like protein 1 [Danio rerio]
gi|6694225|gb|AAF25188.1|AF184245_1 ribonucleoprotein [Danio rerio]
Length = 322
Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 61/84 (72%), Positives = 70/84 (83%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
SLGYGFVNY P DAE+AINTLNGLRLQ+KTIKVSYARPSS+ IK ANLY+SGLPK
Sbjct: 55 AGHSLGYGFVNYVNPSDAERAINTLNGLRLQSKTIKVSYARPSSDGIKDANLYISGLPKT 114
Query: 92 MSQQELESLFSPYGRIITSRILCD 115
M+Q+ +E +F+ YGRII SRIL D
Sbjct: 115 MTQKNVEDMFTQYGRIINSRILVD 138
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 28/37 (75%)
Query: 82 NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLA 118
NL ++ LP++MSQ+EL SLFS G + +++++ D +A
Sbjct: 19 NLIINYLPQNMSQEELRSLFSSIGEVESAKLIRDKMA 55
Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 28/41 (68%)
Query: 30 ISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY 70
+T++ G+GFV E+A AI++LNG RL +K ++VS+
Sbjct: 275 FNTSKCKGFGFVTMTNYEEAAMAISSLNGYRLGDKVLQVSF 315
>gi|308464232|ref|XP_003094384.1| CRE-EXC-7 protein [Caenorhabditis remanei]
gi|308247806|gb|EFO91758.1| CRE-EXC-7 protein [Caenorhabditis remanei]
Length = 457
Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 60/86 (69%), Positives = 74/86 (86%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY + DA +A+++ NGLRLQNKTIKVSYARPS++ IKG+NLYVSG+PK
Sbjct: 81 TGQSLGYGFVNYVQEADALRAVSSFNGLRLQNKTIKVSYARPSNDQIKGSNLYVSGIPKS 140
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+ ELES+F P+G+IITSRIL DN+
Sbjct: 141 MTLHELESIFRPFGQIITSRILSDNV 166
>gi|410927510|ref|XP_003977185.1| PREDICTED: ELAV-like protein 1-like [Takifugu rubripes]
Length = 341
Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 59/84 (70%), Positives = 71/84 (84%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
SLGYGFVNY P DAE+AINTLNGLRLQ+K IKVSYARPSS++IK ANLY+SGLPK
Sbjct: 72 AGHSLGYGFVNYVTPSDAERAINTLNGLRLQSKNIKVSYARPSSDTIKDANLYISGLPKS 131
Query: 92 MSQQELESLFSPYGRIITSRILCD 115
M+Q+++E +FS +GRII SR+L D
Sbjct: 132 MTQKDVEDMFSRFGRIINSRVLVD 155
Score = 39.3 bits (90), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 28/37 (75%)
Query: 82 NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLA 118
NL V+ LP++MSQ+EL SLFS G + +++++ D +A
Sbjct: 36 NLIVNYLPQNMSQEELRSLFSSIGEVESAKLIRDKIA 72
Score = 36.2 bits (82), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 25/40 (62%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY 70
+T + G+GFV EDA AI +LNG RL K ++VS+
Sbjct: 295 TTNKCKGFGFVTMSNYEDAAMAIASLNGYRLGEKILQVSF 334
>gi|18858613|ref|NP_571527.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu
antigen R) [Danio rerio]
gi|6694223|gb|AAF25187.1|AF184244_1 ribonucleoprotein [Danio rerio]
Length = 324
Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 60/84 (71%), Positives = 71/84 (84%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
SLGYGFVNY P DAE+AI+TLNGLRLQ+KTIKVSYARPSS+SIK ANLY+SGLPK
Sbjct: 55 AGHSLGYGFVNYVNPNDAERAISTLNGLRLQSKTIKVSYARPSSDSIKDANLYISGLPKT 114
Query: 92 MSQQELESLFSPYGRIITSRILCD 115
M+Q+++E +F YGRII SR+L D
Sbjct: 115 MTQKDVEEMFGRYGRIINSRVLVD 138
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 27/37 (72%)
Query: 82 NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLA 118
NL V+ LP++MSQ EL SLFS G + +++++ D +A
Sbjct: 19 NLIVNYLPQNMSQDELRSLFSSIGEVESAKLIRDKVA 55
>gi|28279908|gb|AAH44184.1| Elavl1 protein [Danio rerio]
Length = 324
Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 60/84 (71%), Positives = 71/84 (84%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
SLGYGFVNY P DAE+AI+TLNGLRLQ+KTIKVSYARPSS+SIK ANLY+SGLPK
Sbjct: 55 AGHSLGYGFVNYLNPNDAERAISTLNGLRLQSKTIKVSYARPSSDSIKDANLYISGLPKT 114
Query: 92 MSQQELESLFSPYGRIITSRILCD 115
M+Q+++E +F YGRII SR+L D
Sbjct: 115 MTQKDVEEMFGRYGRIINSRVLVD 138
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 27/37 (72%)
Query: 82 NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLA 118
NL V+ LP++MSQ EL SLFS G + +++++ D +A
Sbjct: 19 NLIVNYLPQNMSQDELRSLFSSIGEVESAKLIRDKVA 55
>gi|342837655|tpg|DAA34917.1| TPA_inf: embryonic lethal abnormal vision 1-like protein [Schmidtea
mediterranea]
Length = 466
Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats.
Identities = 64/86 (74%), Positives = 71/86 (82%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T +SLGY FV + RP DAEKAI TLNGLRLQNKTIKVS ARPSSESIKGANLY+ GLPK
Sbjct: 139 TTGESLGYAFVKFVRPNDAEKAIKTLNGLRLQNKTIKVSLARPSSESIKGANLYICGLPK 198
Query: 91 HMSQQELESLFSPYGRIITSRILCDN 116
M+Q ELE FS G+IIT+RIL DN
Sbjct: 199 KMTQVELEEQFSQCGKIITARILYDN 224
>gi|225706444|gb|ACO09068.1| ELAV-like protein 1 [Osmerus mordax]
Length = 374
Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 59/84 (70%), Positives = 72/84 (85%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
SLGYGFVNY P DAE+AI+TLNGLRLQ+KTIKVSYARPSS++IK ANLY+SGLPK
Sbjct: 72 AGHSLGYGFVNYLNPSDAERAISTLNGLRLQSKTIKVSYARPSSDTIKDANLYISGLPKT 131
Query: 92 MSQQELESLFSPYGRIITSRILCD 115
M+Q+++E +F+ YGRII SR+L D
Sbjct: 132 MTQKDVEDMFARYGRIINSRVLVD 155
>gi|339246059|ref|XP_003374663.1| putative RNA recognition motif protein [Trichinella spiralis]
gi|316972148|gb|EFV55839.1| putative RNA recognition motif protein [Trichinella spiralis]
Length = 427
Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 63/85 (74%), Positives = 70/85 (82%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGF+NY PE A KAI LNGL LQ+K +KVSYARPSSESIKGANLY+SGLP
Sbjct: 56 TGQSLGYGFINYVNPESAAKAIERLNGLGLQSKKMKVSYARPSSESIKGANLYISGLPDA 115
Query: 92 MSQQELESLFSPYGRIITSRILCDN 116
+ +ELE LFSP+GRIITSRIL DN
Sbjct: 116 YTVKELEELFSPFGRIITSRILVDN 140
>gi|148237069|ref|NP_001084078.1| ELAV-like protein 1-A [Xenopus laevis]
gi|123909821|sp|Q1JQ73.1|ELV1A_XENLA RecName: Full=ELAV-like protein 1-A; AltName: Full=36 kDa
embryonic-type cytoplasmic polyadenylation
element-binding protein; Short=36 kDa eCPE-binding
protein; Short=36 kDa eCPEB; Short=p36; AltName:
Full=Protein ElrA-A; Short=ElrA
gi|94574290|gb|AAI16460.1| ElrA protein [Xenopus laevis]
Length = 337
Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 59/86 (68%), Positives = 73/86 (84%)
Query: 30 ISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLP 89
+S SLGYGFVNY +DAE+AINTLNGLRLQ+KTIKVS+ARPSSESIK ANLY+SGLP
Sbjct: 66 LSKGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSFARPSSESIKDANLYISGLP 125
Query: 90 KHMSQQELESLFSPYGRIITSRILCD 115
+ M+Q+++E +F P+G II SR+L D
Sbjct: 126 RTMTQKDVEDMFLPFGHIINSRVLVD 151
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 29/43 (67%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLA 118
+ I NL V+ LP++M+Q EL SLFS G + +++++ D +A
Sbjct: 15 DDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVA 57
Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 27/41 (65%)
Query: 30 ISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY 70
+T + G+GFV E+A AI +LNG RL +KT++VS+
Sbjct: 290 FNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKTLQVSF 330
>gi|345327136|ref|XP_001505507.2| PREDICTED: ELAV-like protein 1-like [Ornithorhynchus anatinus]
Length = 229
Score = 128 bits (322), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 60/87 (68%), Positives = 72/87 (82%)
Query: 35 SLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQ 94
SLGYGFVNY +DAE+AINTLNGLRLQ+KTIKVSYARPSSE IK ANLY+SGLP+ M+Q
Sbjct: 60 SLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQ 119
Query: 95 QELESLFSPYGRIITSRILCDNLATEN 121
+++E +FS +GRII SR+L D N
Sbjct: 120 KDVEDMFSRFGRIINSRVLVDQTTALN 146
Score = 38.9 bits (89), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 71 ARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLA 118
A + I NL V+ LP++M+Q EL SLFS G + +++++ D +A
Sbjct: 10 AEDCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVA 57
>gi|348504910|ref|XP_003440004.1| PREDICTED: ELAV-like protein 1-like isoform 3 [Oreochromis
niloticus]
Length = 369
Score = 128 bits (321), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 58/83 (69%), Positives = 73/83 (87%)
Query: 33 AQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHM 92
+ SLGYGFVN+ P DAE+AI+TLNGLRLQ+KTIKVS+ARPSS++IK ANLY+SGLP+ +
Sbjct: 103 SHSLGYGFVNFVNPSDAERAISTLNGLRLQSKTIKVSFARPSSDAIKDANLYISGLPRTL 162
Query: 93 SQQELESLFSPYGRIITSRILCD 115
SQQ++E +FS YGRII SR+L D
Sbjct: 163 SQQDVEDMFSHYGRIINSRVLVD 185
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 4/52 (7%)
Query: 82 NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLA----TENGKYYSGLG 129
NL V+ LP+ MSQ EL SLFS G + +++++ D +A T+N + G G
Sbjct: 58 NLIVNYLPQSMSQDELRSLFSSVGEVESAKLIRDKVAGNDETKNESHSLGYG 109
Score = 35.8 bits (81), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 27/41 (65%)
Query: 30 ISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY 70
+T + G+GFV E+A AI++LNG RL +K ++VS+
Sbjct: 322 FNTNKCKGFGFVTMANYEEAAMAIHSLNGYRLGDKVLQVSF 362
>gi|115666403|ref|XP_802063.2| PREDICTED: ELAV-like protein 2-like isoform 7 [Strongylocentrotus
purpuratus]
Length = 367
Score = 128 bits (321), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 63/106 (59%), Positives = 81/106 (76%), Gaps = 2/106 (1%)
Query: 20 FSDAEICVFLIS--TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSES 77
F + E C + T QSLGYGFVNY +P DA KA+ TLNGLRLQ KTIKVS+ARPSS++
Sbjct: 61 FGEIESCKLVRDKLTGQSLGYGFVNYLKPADALKAVKTLNGLRLQCKTIKVSFARPSSQA 120
Query: 78 IKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGK 123
IK ANLY+SG+PKH Q +L++LF+ +GRII SR+L D+ E+G+
Sbjct: 121 IKDANLYISGIPKHYGQLDLDNLFNAFGRIICSRLLLDHECGESGR 166
Score = 35.4 bits (80), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 37 GYGFVNYHRPEDAEKAINTLNGLRLQNK-TIKVSYARPSSES 77
GYGFVN ++A AINTLNG +L K T++VS+ +S
Sbjct: 326 GYGFVNMLNYDEALSAINTLNGYQLNGKRTLQVSFKSSKQKS 367
Score = 35.4 bits (80), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 29/43 (67%)
Query: 82 NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKY 124
NL V+ LP++M+Q E++SLF +G I + +++ D L ++ Y
Sbjct: 39 NLIVNYLPQNMAQDEMKSLFGKFGEIESCKLVRDKLTGQSLGY 81
>gi|348504908|ref|XP_003440003.1| PREDICTED: ELAV-like protein 1-like isoform 2 [Oreochromis
niloticus]
Length = 361
Score = 128 bits (321), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 58/84 (69%), Positives = 72/84 (85%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
SLGYGFVN+ P DAE+AI+TLNGLRLQ+KTIKVS+ARPSS++IK ANLY+SGLP+
Sbjct: 94 AGHSLGYGFVNFVNPSDAERAISTLNGLRLQSKTIKVSFARPSSDAIKDANLYISGLPRT 153
Query: 92 MSQQELESLFSPYGRIITSRILCD 115
+SQQ++E +FS YGRII SR+L D
Sbjct: 154 LSQQDVEDMFSHYGRIINSRVLVD 177
Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 26/37 (70%)
Query: 82 NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLA 118
NL V+ LP+ MSQ EL SLFS G + +++++ D +A
Sbjct: 58 NLIVNYLPQSMSQDELRSLFSSVGEVESAKLIRDKVA 94
Score = 36.2 bits (82), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 27/41 (65%)
Query: 30 ISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY 70
+T + G+GFV E+A AI++LNG RL +K ++VS+
Sbjct: 314 FNTNKCKGFGFVTMANYEEAAMAIHSLNGYRLGDKVLQVSF 354
>gi|198425950|ref|XP_002126161.1| PREDICTED: similar to ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 (Hu antigen D) [Ciona intestinalis]
Length = 564
Score = 128 bits (321), Expect = 9e-28, Method: Composition-based stats.
Identities = 60/84 (71%), Positives = 72/84 (85%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY + DAEKAIN+LNGLR+Q KTIKVS+ARPS+ IK ANLYVSGLPK
Sbjct: 125 TGQSLGYGFVNYVKAADAEKAINSLNGLRMQQKTIKVSFARPSTPLIKDANLYVSGLPKS 184
Query: 92 MSQQELESLFSPYGRIITSRILCD 115
M+Q++L+ +F P+GRIITSRIL +
Sbjct: 185 MTQEDLQRIFHPFGRIITSRILVE 208
Score = 35.8 bits (81), Expect = 5.4, Method: Composition-based stats.
Identities = 30/82 (36%), Positives = 40/82 (48%), Gaps = 16/82 (19%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
ST S G GFV + + +AE AI+ LNG TI P ++K AN P
Sbjct: 210 STGMSRGVGFVRFDKRPEAENAISALNG------TIPAGAKDPV--TVKFAN-----NPS 256
Query: 91 HMSQQELESLF---SPYGRIIT 109
+QQ L+SL+ SP R+ T
Sbjct: 257 QKNQQVLQSLYAAASPTRRLAT 278
>gi|49658982|emb|CAE01482.1| HUR [Tetraodon nigroviridis]
Length = 325
Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 58/84 (69%), Positives = 71/84 (84%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
SLGYGFVNY P DAE+AI+TLNGLRLQ+K IKVSYARPSS++IK ANLY+SGLPK
Sbjct: 56 AGHSLGYGFVNYVNPSDAERAISTLNGLRLQSKNIKVSYARPSSDTIKDANLYISGLPKS 115
Query: 92 MSQQELESLFSPYGRIITSRILCD 115
M+Q+++E +FS +GRII SR+L D
Sbjct: 116 MTQKDVEDMFSQFGRIINSRVLVD 139
Score = 38.9 bits (89), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 28/37 (75%)
Query: 82 NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLA 118
NL V+ LP++MSQ+EL SLFS G + +++++ D +A
Sbjct: 20 NLIVNYLPQNMSQEELRSLFSSIGEVESAKLIRDKVA 56
Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 26/40 (65%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY 70
+T + G+GFV EDA AI +LNG RL +K ++VS+
Sbjct: 279 NTNKCKGFGFVTMSNYEDAAMAIASLNGYRLGDKILQVSF 318
>gi|432119731|gb|ELK38615.1| ELAV-like protein 1 [Myotis davidii]
Length = 296
Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 60/84 (71%), Positives = 71/84 (84%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
SLGYGFVNY +DAEKAINTLNGLRLQ+KTIKVSYARPSSE IK ANLY+SGLP+
Sbjct: 27 AGHSLGYGFVNYVTAKDAEKAINTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRT 86
Query: 92 MSQQELESLFSPYGRIITSRILCD 115
M+Q+++E +FS +GRII SR+L D
Sbjct: 87 MTQKDVEDMFSRFGRIINSRVLVD 110
>gi|348504906|ref|XP_003440002.1| PREDICTED: ELAV-like protein 1-like isoform 1 [Oreochromis
niloticus]
Length = 335
Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 58/84 (69%), Positives = 72/84 (85%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
SLGYGFVN+ P DAE+AI+TLNGLRLQ+KTIKVS+ARPSS++IK ANLY+SGLP+
Sbjct: 68 AGHSLGYGFVNFVNPSDAERAISTLNGLRLQSKTIKVSFARPSSDAIKDANLYISGLPRT 127
Query: 92 MSQQELESLFSPYGRIITSRILCD 115
+SQQ++E +FS YGRII SR+L D
Sbjct: 128 LSQQDVEDMFSHYGRIINSRVLVD 151
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 26/37 (70%)
Query: 82 NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLA 118
NL V+ LP+ MSQ EL SLFS G + +++++ D +A
Sbjct: 32 NLIVNYLPQSMSQDELRSLFSSVGEVESAKLIRDKVA 68
Score = 36.2 bits (82), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 27/41 (65%)
Query: 30 ISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY 70
+T + G+GFV E+A AI++LNG RL +K ++VS+
Sbjct: 288 FNTNKCKGFGFVTMANYEEAAMAIHSLNGYRLGDKVLQVSF 328
>gi|388604324|pdb|4EGL|A Chain A, Crystal Structure Of Two Tandem Rna Recognition Motifs Of
Human Antigen R
Length = 177
Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 59/82 (71%), Positives = 71/82 (86%)
Query: 34 QSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMS 93
SLGYGFVNY +DAE+AINTLNGLRLQ+KTIKVSYARPSSE IK ANLY+SGLP+ M+
Sbjct: 42 HSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMT 101
Query: 94 QQELESLFSPYGRIITSRILCD 115
Q+++E +FS +GRII SR+L D
Sbjct: 102 QKDVEDMFSRFGRIINSRVLVD 123
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 27/37 (72%)
Query: 82 NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLA 118
NL V+ LP++M+Q EL SLFS G + +++++ D +A
Sbjct: 4 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVA 40
>gi|388326834|pdb|4ED5|A Chain A, Crystal Structure Of The Two N-Terminal Rrm Domains Of Hur
Complexed With Rna
gi|388326835|pdb|4ED5|B Chain B, Crystal Structure Of The Two N-Terminal Rrm Domains Of Hur
Complexed With Rna
Length = 177
Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 59/82 (71%), Positives = 71/82 (86%)
Query: 34 QSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMS 93
SLGYGFVNY +DAE+AINTLNGLRLQ+KTIKVSYARPSSE IK ANLY+SGLP+ M+
Sbjct: 42 HSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMT 101
Query: 94 QQELESLFSPYGRIITSRILCD 115
Q+++E +FS +GRII SR+L D
Sbjct: 102 QKDVEDMFSRFGRIINSRVLVD 123
Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 27/37 (72%)
Query: 82 NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLA 118
NL V+ LP++M+Q EL SLFS G + +++++ D +A
Sbjct: 4 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVA 40
>gi|53749734|ref|NP_001005461.1| ELAV-like protein 1 [Xenopus (Silurana) tropicalis]
gi|82236379|sp|Q6GLB5.1|ELAV1_XENTR RecName: Full=ELAV-like protein 1; AltName: Full=Protein ElrA
gi|49250885|gb|AAH74585.1| ELAV (embryonic lethal, abnormal vision)-like 1 (Hu antigen R)
[Xenopus (Silurana) tropicalis]
Length = 326
Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 59/84 (70%), Positives = 71/84 (84%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
SLGYGFVNY +DAE+AINTLNGLRLQ+KTIKVS ARPSSESIK ANLY+SGLP+
Sbjct: 57 AGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSVARPSSESIKDANLYISGLPRT 116
Query: 92 MSQQELESLFSPYGRIITSRILCD 115
M+Q+++E +F P+GRII SR+L D
Sbjct: 117 MTQKDVEDMFLPFGRIINSRVLVD 140
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 29/43 (67%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLA 118
+ I NL V+ LP++M+Q EL SLFS G + +++++ D +A
Sbjct: 15 DDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVA 57
>gi|440910206|gb|ELR60031.1| ELAV-like protein 1, partial [Bos grunniens mutus]
Length = 330
Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 59/84 (70%), Positives = 72/84 (85%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
SLGYGFVNY +DAE+AINTLNGLRLQ+KTIKVSYARPSSE IK ANLY+SGLP++
Sbjct: 42 AGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRN 101
Query: 92 MSQQELESLFSPYGRIITSRILCD 115
M+Q+++E +FS +GRII SR+L D
Sbjct: 102 MTQKDVEDMFSRFGRIINSRVLVD 125
Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 27/37 (72%)
Query: 82 NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLA 118
NL V+ LP++M+Q EL SLFS G + +++++ D +A
Sbjct: 6 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVA 42
>gi|301508553|gb|ADK78238.1| ELAV2 [Schmidtea mediterranea]
Length = 411
Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 70/111 (63%), Positives = 80/111 (72%), Gaps = 5/111 (4%)
Query: 11 FTYEKVHLGFSD---AEICVFL--ISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKT 65
T E+V FS E C + +T +SLGY FV Y DAEKAI TLNGLRLQNKT
Sbjct: 64 MTQEEVRALFSSIGVVESCKLVRDKTTGESLGYSFVKYLNYPDAEKAIRTLNGLRLQNKT 123
Query: 66 IKVSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
IKVS ARPSSE+IKGANLY+ GLPK M+Q ELE+LFS G+IIT+RIL DN
Sbjct: 124 IKVSLARPSSEAIKGANLYICGLPKKMTQMELENLFSQCGKIITARILYDN 174
>gi|297632376|ref|NP_001172077.1| ELAV-like protein 1 [Oryctolagus cuniculus]
gi|296399062|gb|ADH10369.1| embryonic lethal abnormal vision-like 1 protein [Oryctolagus
cuniculus]
Length = 326
Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 60/84 (71%), Positives = 71/84 (84%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
SLGYGFVNY +DAEKAINTLNGLRLQ+KTIKVSYARPSSE IK ANLY+SGLP+
Sbjct: 57 AGHSLGYGFVNYVTAKDAEKAINTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRT 116
Query: 92 MSQQELESLFSPYGRIITSRILCD 115
M+Q+++E +FS +GRII SR+L D
Sbjct: 117 MTQKDVEDMFSRFGRIINSRVLVD 140
Score = 38.5 bits (88), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 31/48 (64%)
Query: 71 ARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLA 118
A + I NL V+ LP++M+Q+EL SLFS G + +++++ D +A
Sbjct: 10 AEDCRDDIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVA 57
>gi|115497832|ref|NP_001069922.1| ELAV-like protein 1 [Bos taurus]
gi|261244966|ref|NP_001159666.1| ELAV-like protein 1 [Ovis aries]
gi|73587279|gb|AAI02496.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu
antigen R) [Bos taurus]
gi|256665397|gb|ACV04844.1| ELAV-like protein 1 [Ovis aries]
gi|296485836|tpg|DAA27951.1| TPA: ELAV-like 1 (Hu antigen R) [Bos taurus]
Length = 326
Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 59/84 (70%), Positives = 72/84 (85%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
SLGYGFVNY +DAE+AINTLNGLRLQ+KTIKVSYARPSSE IK ANLY+SGLP++
Sbjct: 57 AGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRN 116
Query: 92 MSQQELESLFSPYGRIITSRILCD 115
M+Q+++E +FS +GRII SR+L D
Sbjct: 117 MTQKDVEDMFSRFGRIINSRVLVD 140
Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 71 ARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLA 118
A + I NL V+ LP++M+Q EL SLFS G + +++++ D +A
Sbjct: 10 AEDCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVA 57
>gi|410928273|ref|XP_003977525.1| PREDICTED: ELAV-like protein 1-like isoform 3 [Takifugu rubripes]
Length = 368
Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 60/83 (72%), Positives = 70/83 (84%)
Query: 33 AQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHM 92
+ SLGYGFVN+ P DA +AINTLNGLRLQ+KT+KVSYARPSSE IK ANLY+SGLP+
Sbjct: 103 SHSLGYGFVNFVNPSDAVRAINTLNGLRLQSKTLKVSYARPSSEMIKDANLYISGLPRTA 162
Query: 93 SQQELESLFSPYGRIITSRILCD 115
SQQ+LE +FS YGRII SR+L D
Sbjct: 163 SQQDLEDMFSHYGRIINSRVLVD 185
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 27/37 (72%)
Query: 82 NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLA 118
NL V+ LP+ MSQ+EL SLFS G + +++++ D +A
Sbjct: 56 NLIVNYLPQSMSQEELRSLFSSVGDVESAKLIRDKVA 92
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 28/41 (68%)
Query: 30 ISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY 70
+T++ G+GFV E+A AI++LNG RL +K ++VS+
Sbjct: 321 FNTSKCKGFGFVTMSNYEEAAMAIHSLNGYRLGDKVLQVSF 361
>gi|608537|gb|AAA96942.1| ribonucleoprotein [Xenopus laevis]
Length = 326
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/84 (69%), Positives = 71/84 (84%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
SLGYGFVNY +DAE+AINTLNGLRLQ+KTIKVS+ARPSSESIK ANLY+SGLP+
Sbjct: 57 AGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSFARPSSESIKDANLYISGLPRT 116
Query: 92 MSQQELESLFSPYGRIITSRILCD 115
M+Q+++E +F P+G II SR+L D
Sbjct: 117 MTQKDVEDMFLPFGHIINSRVLVD 140
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 29/43 (67%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLA 118
+ I NL V+ LP++M+Q EL SLFS G + +++++ D +A
Sbjct: 15 DDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVA 57
Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 27/40 (67%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY 70
+T + G+GFV E+A AI +LNG RL +KT++VS+
Sbjct: 280 NTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKTLQVSF 319
>gi|410928269|ref|XP_003977523.1| PREDICTED: ELAV-like protein 1-like isoform 1 [Takifugu rubripes]
Length = 334
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 60/84 (71%), Positives = 69/84 (82%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
SLGYGFVN+ P DA +AINTLNGLRLQ+KT+KVSYARPSSE IK ANLY+SGLP+
Sbjct: 68 AGHSLGYGFVNFVNPSDAVRAINTLNGLRLQSKTLKVSYARPSSEMIKDANLYISGLPRT 127
Query: 92 MSQQELESLFSPYGRIITSRILCD 115
SQQ+LE +FS YGRII SR+L D
Sbjct: 128 ASQQDLEDMFSHYGRIINSRVLVD 151
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 27/37 (72%)
Query: 82 NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLA 118
NL V+ LP+ MSQ+EL SLFS G + +++++ D +A
Sbjct: 32 NLIVNYLPQSMSQEELRSLFSSVGDVESAKLIRDKVA 68
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 28/41 (68%)
Query: 30 ISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY 70
+T++ G+GFV E+A AI++LNG RL +K ++VS+
Sbjct: 287 FNTSKCKGFGFVTMSNYEEAAMAIHSLNGYRLGDKVLQVSF 327
>gi|239938028|gb|ACS36113.1| RNA-binding protein Elav1 [Capitella teleta]
Length = 143
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/80 (76%), Positives = 70/80 (87%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T QSLGYGFVNY R EDA KAI +LNGLRLQNKTIKVS ARPSSESIKGANLY+SGLPK
Sbjct: 64 ATGQSLGYGFVNYKRQEDASKAITSLNGLRLQNKTIKVSVARPSSESIKGANLYISGLPK 123
Query: 91 HMSQQELESLFSPYGRIITS 110
+M+Q +LE++F+ G IITS
Sbjct: 124 NMTQVDLENMFNHCGNIITS 143
>gi|410928271|ref|XP_003977524.1| PREDICTED: ELAV-like protein 1-like isoform 2 [Takifugu rubripes]
Length = 358
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 60/84 (71%), Positives = 69/84 (82%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
SLGYGFVN+ P DA +AINTLNGLRLQ+KT+KVSYARPSSE IK ANLY+SGLP+
Sbjct: 92 AGHSLGYGFVNFVNPSDAVRAINTLNGLRLQSKTLKVSYARPSSEMIKDANLYISGLPRT 151
Query: 92 MSQQELESLFSPYGRIITSRILCD 115
SQQ+LE +FS YGRII SR+L D
Sbjct: 152 ASQQDLEDMFSHYGRIINSRVLVD 175
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 27/37 (72%)
Query: 82 NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLA 118
NL V+ LP+ MSQ+EL SLFS G + +++++ D +A
Sbjct: 56 NLIVNYLPQSMSQEELRSLFSSVGDVESAKLIRDKVA 92
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 28/41 (68%)
Query: 30 ISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY 70
+T++ G+GFV E+A AI++LNG RL +K ++VS+
Sbjct: 311 FNTSKCKGFGFVTMSNYEEAAMAIHSLNGYRLGDKVLQVSF 351
>gi|395513446|ref|XP_003760935.1| PREDICTED: ELAV-like protein 1 [Sarcophilus harrisii]
Length = 374
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/83 (71%), Positives = 71/83 (85%)
Query: 33 AQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHM 92
SLGYGFVNY +DAE+AINTLNGLRLQ+KTIKVSYARPSSE IK ANLY+SGLP+ M
Sbjct: 106 GHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTM 165
Query: 93 SQQELESLFSPYGRIITSRILCD 115
+Q+++E +FS +GRII SR+L D
Sbjct: 166 TQKDVEDMFSRFGRIINSRVLVD 188
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 71 ARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLA 118
A + I NL V+ LP++M+Q EL SLFS G + +++++ D +A
Sbjct: 58 AEDCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVA 105
>gi|431900165|gb|ELK08079.1| ELAV-like protein 1 [Pteropus alecto]
Length = 401
Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/84 (70%), Positives = 71/84 (84%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
SLGYGFVNY +DAE+AINTLNGLRLQ+KTIKVSYARPSSE IK ANLY+SGLP+
Sbjct: 49 AGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRT 108
Query: 92 MSQQELESLFSPYGRIITSRILCD 115
M+Q+++E +FS +GRII SR+L D
Sbjct: 109 MTQKDVEDMFSRFGRIINSRVLVD 132
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 71 ARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLA 118
A + I NL V+ LP++M+Q EL SLFS G + +++++ D +A
Sbjct: 2 AEDCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVA 49
>gi|417409800|gb|JAA51391.1| Putative rna-binding protein elav/hu rrm superfamily, partial
[Desmodus rotundus]
Length = 336
Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/84 (69%), Positives = 72/84 (85%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
SLGYGFVNY +DAE+A+NTLNGLRLQ+KTIKVSYARPSSE IK ANLY+SGLP++
Sbjct: 67 AGHSLGYGFVNYVTAKDAERAVNTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRN 126
Query: 92 MSQQELESLFSPYGRIITSRILCD 115
M+Q+++E +FS +GRII SR+L D
Sbjct: 127 MTQKDVEDMFSRFGRIINSRVLVD 150
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 71 ARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLA 118
A + I NL V+ LP++M+Q EL SLFS G + +++++ D +A
Sbjct: 20 AEDCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVA 67
>gi|297275993|ref|XP_001092907.2| PREDICTED: ELAV-like protein 1 isoform 4 [Macaca mulatta]
Length = 387
Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/84 (70%), Positives = 71/84 (84%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
SLGYGFVNY +DAE+AINTLNGLRLQ+KTIKVSYARPSSE IK ANLY+SGLP+
Sbjct: 57 AGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRT 116
Query: 92 MSQQELESLFSPYGRIITSRILCD 115
M+Q+++E +FS +GRII SR+L D
Sbjct: 117 MTQKDVEDMFSRFGRIINSRVLVD 140
Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 27/37 (72%)
Query: 82 NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLA 118
NL V+ LP++M+Q EL SLFS G + +++++ D +A
Sbjct: 21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVA 57
>gi|326934269|ref|XP_003213214.1| PREDICTED: ELAV-like protein 1-like [Meleagris gallopavo]
Length = 298
Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/85 (69%), Positives = 72/85 (84%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+ SLGYGFVNY +DAE+AINTLNGLRLQ+KTIKVSYARPSSE IK ANLY+SGLP+
Sbjct: 28 TPGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPR 87
Query: 91 HMSQQELESLFSPYGRIITSRILCD 115
M+Q+++E +FS +GRII SR+L D
Sbjct: 88 SMTQKDVEDMFSRFGRIINSRVLVD 112
>gi|343959022|dbj|BAK63366.1| ELAV-like protein 1 [Pan troglodytes]
Length = 305
Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/84 (70%), Positives = 71/84 (84%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
SLGYGFVNY +DAE+AINTLNGLRLQ+KTIKVSYARPSSE IK ANLY+SGLP+
Sbjct: 57 AGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRT 116
Query: 92 MSQQELESLFSPYGRIITSRILCD 115
M+Q+++E +FS +GRII SR+L D
Sbjct: 117 MTQKDVEDMFSRFGRIINSRVLVD 140
Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 27/37 (72%)
Query: 82 NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLA 118
NL V+ LP++M+Q EL SLFS G + +++++ D +A
Sbjct: 21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVA 57
>gi|224087249|ref|XP_002190976.1| PREDICTED: ELAV-like protein 1-like [Taeniopygia guttata]
gi|449266784|gb|EMC77794.1| ELAV-like protein 1 [Columba livia]
Length = 326
Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/84 (70%), Positives = 71/84 (84%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
SLGYGFVNY +DAE+AINTLNGLRLQ+KTIKVSYARPSSE IK ANLY+SGLP+
Sbjct: 57 AGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRS 116
Query: 92 MSQQELESLFSPYGRIITSRILCD 115
M+Q+++E +FS +GRII SR+L D
Sbjct: 117 MTQKDVEDMFSRFGRIINSRVLVD 140
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 71 ARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLA 118
A + I NL V+ LP++M+Q EL SLFS G + +++++ D +A
Sbjct: 10 AEDCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVA 57
>gi|410950299|ref|XP_003981845.1| PREDICTED: ELAV-like protein 1 [Felis catus]
Length = 336
Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 59/84 (70%), Positives = 71/84 (84%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
SLGYGFVNY +DAE+AINTLNGLRLQ+KTIKVSYARPSSE IK ANLY+SGLP+
Sbjct: 67 AGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRT 126
Query: 92 MSQQELESLFSPYGRIITSRILCD 115
M+Q+++E +FS +GRII SR+L D
Sbjct: 127 MTQKDVEDMFSRFGRIINSRVLVD 150
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 71 ARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLA 118
A + I NL V+ LP++M+Q EL SLFS G + +++++ D +A
Sbjct: 20 AEDCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVA 67
>gi|301773130|ref|XP_002921959.1| PREDICTED: ELAV-like protein 1-like isoform 3 [Ailuropoda
melanoleuca]
Length = 339
Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 59/84 (70%), Positives = 71/84 (84%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
SLGYGFVNY +DAE+AINTLNGLRLQ+KTIKVSYARPSSE IK ANLY+SGLP+
Sbjct: 57 AGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRT 116
Query: 92 MSQQELESLFSPYGRIITSRILCD 115
M+Q+++E +FS +GRII SR+L D
Sbjct: 117 MTQKDVEDMFSRFGRIINSRVLVD 140
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 71 ARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLA 118
A + I NL V+ LP++M+Q EL SLFS G + +++++ D +A
Sbjct: 10 AEDCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVA 57
>gi|73986922|ref|XP_854218.1| PREDICTED: ELAV-like protein 1 isoform 1 [Canis lupus familiaris]
gi|301773126|ref|XP_002921957.1| PREDICTED: ELAV-like protein 1-like isoform 1 [Ailuropoda
melanoleuca]
gi|344299314|ref|XP_003421331.1| PREDICTED: ELAV-like protein 1 [Loxodonta africana]
gi|281349989|gb|EFB25573.1| hypothetical protein PANDA_010904 [Ailuropoda melanoleuca]
Length = 326
Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 59/84 (70%), Positives = 71/84 (84%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
SLGYGFVNY +DAE+AINTLNGLRLQ+KTIKVSYARPSSE IK ANLY+SGLP+
Sbjct: 57 AGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRT 116
Query: 92 MSQQELESLFSPYGRIITSRILCD 115
M+Q+++E +FS +GRII SR+L D
Sbjct: 117 MTQKDVEDMFSRFGRIINSRVLVD 140
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 71 ARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLA 118
A + I NL V+ LP++M+Q EL SLFS G + +++++ D +A
Sbjct: 10 AEDCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVA 57
>gi|38201714|ref|NP_001410.2| ELAV-like protein 1 [Homo sapiens]
gi|114675067|ref|XP_001156643.1| PREDICTED: ELAV-like protein 1 isoform 2 [Pan troglodytes]
gi|395750352|ref|XP_002828622.2| PREDICTED: ELAV-like protein 1 [Pongo abelii]
gi|395841768|ref|XP_003793705.1| PREDICTED: ELAV-like protein 1 [Otolemur garnettii]
gi|402914021|ref|XP_003919435.1| PREDICTED: ELAV-like protein 1 [Papio anubis]
gi|403296075|ref|XP_003938946.1| PREDICTED: ELAV-like protein 1 [Saimiri boliviensis boliviensis]
gi|426386981|ref|XP_004059957.1| PREDICTED: ELAV-like protein 1 isoform 1 [Gorilla gorilla gorilla]
gi|20981691|sp|Q15717.2|ELAV1_HUMAN RecName: Full=ELAV-like protein 1; AltName: Full=Hu-antigen R;
Short=HuR
gi|13097228|gb|AAH03376.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu
antigen R) [Homo sapiens]
gi|32879929|gb|AAP88795.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu
antigen R) [Homo sapiens]
gi|60654991|gb|AAX32059.1| ELAV-like 1 [synthetic construct]
gi|60654993|gb|AAX32060.1| ELAV-like 1 [synthetic construct]
gi|60654995|gb|AAX32061.1| ELAV-like 1 [synthetic construct]
gi|60654997|gb|AAX32062.1| ELAV-like 1 [synthetic construct]
gi|119589355|gb|EAW68949.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu
antigen R), isoform CRA_a [Homo sapiens]
gi|157928080|gb|ABW03336.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu
antigen R) [synthetic construct]
gi|157928791|gb|ABW03681.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu
antigen R) [synthetic construct]
gi|208966198|dbj|BAG73113.1| ELAV-like 1protein [synthetic construct]
gi|355703066|gb|EHH29557.1| hypothetical protein EGK_10021 [Macaca mulatta]
gi|355755385|gb|EHH59132.1| hypothetical protein EGM_09177 [Macaca fascicularis]
gi|380784245|gb|AFE63998.1| ELAV-like protein 1 [Macaca mulatta]
gi|383416395|gb|AFH31411.1| ELAV-like protein 1 [Macaca mulatta]
gi|384945706|gb|AFI36458.1| ELAV-like protein 1 [Macaca mulatta]
gi|410212674|gb|JAA03556.1| ELAV (embryonic lethal, abnormal vision)-like 1 (Hu antigen R) [Pan
troglodytes]
gi|410265350|gb|JAA20641.1| ELAV (embryonic lethal, abnormal vision)-like 1 (Hu antigen R) [Pan
troglodytes]
gi|410305890|gb|JAA31545.1| ELAV (embryonic lethal, abnormal vision)-like 1 (Hu antigen R) [Pan
troglodytes]
gi|410342973|gb|JAA40433.1| ELAV (embryonic lethal, abnormal vision)-like 1 (Hu antigen R) [Pan
troglodytes]
Length = 326
Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 59/84 (70%), Positives = 71/84 (84%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
SLGYGFVNY +DAE+AINTLNGLRLQ+KTIKVSYARPSSE IK ANLY+SGLP+
Sbjct: 57 AGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRT 116
Query: 92 MSQQELESLFSPYGRIITSRILCD 115
M+Q+++E +FS +GRII SR+L D
Sbjct: 117 MTQKDVEDMFSRFGRIINSRVLVD 140
Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 27/37 (72%)
Query: 82 NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLA 118
NL V+ LP++M+Q EL SLFS G + +++++ D +A
Sbjct: 21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVA 57
>gi|332852452|ref|XP_001156587.2| PREDICTED: ELAV-like protein 1 isoform 1 [Pan troglodytes]
gi|397477357|ref|XP_003810039.1| PREDICTED: ELAV-like protein 1 [Pan paniscus]
gi|426386983|ref|XP_004059958.1| PREDICTED: ELAV-like protein 1 isoform 2 [Gorilla gorilla gorilla]
gi|194375035|dbj|BAG62630.1| unnamed protein product [Homo sapiens]
Length = 353
Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 59/84 (70%), Positives = 71/84 (84%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
SLGYGFVNY +DAE+AINTLNGLRLQ+KTIKVSYARPSSE IK ANLY+SGLP+
Sbjct: 84 AGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRT 143
Query: 92 MSQQELESLFSPYGRIITSRILCD 115
M+Q+++E +FS +GRII SR+L D
Sbjct: 144 MTQKDVEDMFSRFGRIINSRVLVD 167
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Query: 60 RLQNKTIKVSYARPSSESIKG----ANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
R T+ Y +E +G NL V+ LP++M+Q EL SLFS G + +++++ D
Sbjct: 22 RFLKNTMSNGYEDHMAEDCRGDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRD 81
Query: 116 NLA 118
+A
Sbjct: 82 KVA 84
>gi|1022961|gb|AAB41913.1| HuR RNA binding protein [Homo sapiens]
Length = 326
Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 59/84 (70%), Positives = 71/84 (84%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
SLGYGFVNY +DAE+AINTLNGLRLQ+KTIKVSYARPSSE IK ANLY+SGLP+
Sbjct: 57 AGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRT 116
Query: 92 MSQQELESLFSPYGRIITSRILCD 115
M+Q+++E +FS +GRII SR+L D
Sbjct: 117 MTQKDVEDMFSRFGRIINSRVLVD 140
Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 27/37 (72%)
Query: 82 NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLA 118
NL V+ LP++M+Q EL SLFS G + +++++ D +A
Sbjct: 21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVA 57
>gi|126323791|ref|XP_001366151.1| PREDICTED: ELAV-like protein 1 [Monodelphis domestica]
Length = 326
Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 59/84 (70%), Positives = 71/84 (84%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
SLGYGFVNY +DAE+AINTLNGLRLQ+KTIKVSYARPSSE IK ANLY+SGLP+
Sbjct: 57 AGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRT 116
Query: 92 MSQQELESLFSPYGRIITSRILCD 115
M+Q+++E +FS +GRII SR+L D
Sbjct: 117 MTQKDVEDMFSRFGRIINSRVLVD 140
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 71 ARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLA 118
A + I NL V+ LP++M+Q EL SLFS G + +++++ D +A
Sbjct: 10 AEDCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVA 57
>gi|432853222|ref|XP_004067600.1| PREDICTED: ELAV-like protein 1-like isoform 3 [Oryzias latipes]
Length = 346
Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 59/102 (57%), Positives = 77/102 (75%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
SLGYGFVN+ P DAE+AI+TLNGLRLQ+KTIKVS+ARPSS++IK ANLY+SGLP+
Sbjct: 68 AGHSLGYGFVNFVNPNDAERAISTLNGLRLQSKTIKVSFARPSSDTIKDANLYISGLPRT 127
Query: 92 MSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
+ QQ+LE +F+ +GRII SR+L D + +G + G R
Sbjct: 128 LGQQDLEDMFASFGRIINSRVLVDQASGTSGDICNPPSGLSR 169
Score = 36.2 bits (82), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 26/37 (70%)
Query: 82 NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLA 118
NL V+ LP+ M+Q EL SLFS G + +++++ D +A
Sbjct: 32 NLIVNYLPQSMTQDELRSLFSSVGEVESAKLIRDKVA 68
Score = 35.4 bits (80), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 27/41 (65%)
Query: 30 ISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY 70
+T + G+GFV E+A AI++LNG R+ +K ++VS+
Sbjct: 299 FNTNKCKGFGFVTMTNYEEAAMAIHSLNGYRMGDKVLQVSF 339
>gi|351701320|gb|EHB04239.1| ELAV-like protein 1, partial [Heterocephalus glaber]
Length = 329
Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 59/84 (70%), Positives = 71/84 (84%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
SLGYGFVNY +DAE+AINTLNGLRLQ+KTIKVSYARPSSE IK ANLY+SGLP+
Sbjct: 60 AGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRT 119
Query: 92 MSQQELESLFSPYGRIITSRILCD 115
M+Q+++E +FS +GRII SR+L D
Sbjct: 120 MTQKDVEDMFSRFGRIINSRVLVD 143
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 71 ARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLA 118
A + I NL V+ LP++M+Q EL SLFS G + +++++ D +A
Sbjct: 13 AEDCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVA 60
>gi|332264173|ref|XP_003281121.1| PREDICTED: ELAV-like protein 1 [Nomascus leucogenys]
Length = 326
Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 59/84 (70%), Positives = 71/84 (84%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
SLGYGFVNY +DAE+AINTLNGLRLQ+KTIKVSYARPSSE IK ANLY+SGLP+
Sbjct: 57 AGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRT 116
Query: 92 MSQQELESLFSPYGRIITSRILCD 115
M+Q+++E +FS +GRII SR+L D
Sbjct: 117 MTQKDVEDMFSRFGRIINSRVLVD 140
Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 27/37 (72%)
Query: 82 NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLA 118
NL V+ LP++M+Q EL SLFS G + +++++ D +A
Sbjct: 21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVA 57
>gi|198285433|gb|ACH85255.1| embryonic lethal abnormal vision like 1 [Salmo salar]
Length = 273
Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 58/83 (69%), Positives = 71/83 (85%)
Query: 33 AQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHM 92
+ SLGYGFVNY DAE+AINTLNGLRLQ+KTIKVS+ARPSS+ IK ANLY+SGLPK M
Sbjct: 4 SHSLGYGFVNYVNASDAERAINTLNGLRLQSKTIKVSFARPSSDGIKDANLYISGLPKTM 63
Query: 93 SQQELESLFSPYGRIITSRILCD 115
+Q+++E +F+ YGRII SR+L D
Sbjct: 64 TQKDVEDMFTRYGRIINSRVLVD 86
>gi|67968717|dbj|BAE00717.1| unnamed protein product [Macaca fascicularis]
Length = 326
Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 59/84 (70%), Positives = 71/84 (84%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
SLGYGFVNY +DAE+AINTLNGLRLQ+KTIKVSYARPSSE IK ANLY+SGLP+
Sbjct: 57 AGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRT 116
Query: 92 MSQQELESLFSPYGRIITSRILCD 115
M+Q+++E +FS +GRII SR+L D
Sbjct: 117 MTQKDVEDMFSRFGRIINSRVLVD 140
Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 27/37 (72%)
Query: 82 NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLA 118
NL V+ LP++M+Q EL SLFS G + +++++ D +A
Sbjct: 21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVA 57
>gi|119589356|gb|EAW68950.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu
antigen R), isoform CRA_b [Homo sapiens]
Length = 445
Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 59/84 (70%), Positives = 71/84 (84%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
SLGYGFVNY +DAE+AINTLNGLRLQ+KTIKVSYARPSSE IK ANLY+SGLP+
Sbjct: 176 AGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRT 235
Query: 92 MSQQELESLFSPYGRIITSRILCD 115
M+Q+++E +FS +GRII SR+L D
Sbjct: 236 MTQKDVEDMFSRFGRIINSRVLVD 259
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Query: 60 RLQNKTIKVSYARPSSESIKG----ANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
R T+ Y +E +G NL V+ LP++M+Q EL SLFS G + +++++ D
Sbjct: 114 RFLKNTMSNGYEDHMAEDCRGDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRD 173
Query: 116 NLA 118
+A
Sbjct: 174 KVA 176
>gi|301773128|ref|XP_002921958.1| PREDICTED: ELAV-like protein 1-like isoform 2 [Ailuropoda
melanoleuca]
Length = 325
Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 59/84 (70%), Positives = 71/84 (84%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
SLGYGFVNY +DAE+AINTLNGLRLQ+KTIKVSYARPSSE IK ANLY+SGLP+
Sbjct: 57 AGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRT 116
Query: 92 MSQQELESLFSPYGRIITSRILCD 115
M+Q+++E +FS +GRII SR+L D
Sbjct: 117 MTQKDVEDMFSRFGRIINSRVLVD 140
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 71 ARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLA 118
A + I NL V+ LP++M+Q EL SLFS G + +++++ D +A
Sbjct: 10 AEDCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVA 57
>gi|395546429|ref|XP_003775090.1| PREDICTED: uncharacterized protein LOC100934042 [Sarcophilus
harrisii]
Length = 819
Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats.
Identities = 58/84 (69%), Positives = 70/84 (83%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGF++Y P DAE+A+ LNGL+ KTIKVSYARP+S SI+ ANLY++GLPK+
Sbjct: 540 TGQSLGYGFIDYVHPRDAERAVCLLNGLQCPPKTIKVSYARPNSSSIRDANLYINGLPKN 599
Query: 92 MSQQELESLFSPYGRIITSRILCD 115
M+Q+ELE LFSPYG IITSRIL D
Sbjct: 600 MTQKELEHLFSPYGHIITSRILTD 623
>gi|355685803|gb|AER97853.1| ELAV-like protein 1 [Mustela putorius furo]
Length = 343
Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 59/84 (70%), Positives = 71/84 (84%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
SLGYGFVNY +DAE+AINTLNGLRLQ+KTIKVSYARPSSE IK ANLY+SGLP+
Sbjct: 75 AGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRT 134
Query: 92 MSQQELESLFSPYGRIITSRILCD 115
M+Q+++E +FS +GRII SR+L D
Sbjct: 135 MTQKDVEDMFSRFGRIINSRVLVD 158
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 29/43 (67%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLA 118
+ I NL V+ LP++M+Q EL SLFS G + +++++ D +A
Sbjct: 33 DDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVA 75
>gi|209152513|gb|ACI33116.1| ELAV-like protein 1 [Salmo salar]
Length = 374
Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 58/83 (69%), Positives = 71/83 (85%)
Query: 33 AQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHM 92
+ SLGYGFVNY DAE+AINTLNGLRLQ+KTIKVS+ARPSS+ IK ANLY+SGLPK M
Sbjct: 105 SHSLGYGFVNYVNASDAERAINTLNGLRLQSKTIKVSFARPSSDGIKDANLYISGLPKTM 164
Query: 93 SQQELESLFSPYGRIITSRILCD 115
+Q+++E +F+ YGRII SR+L D
Sbjct: 165 TQKDVEDMFTRYGRIINSRVLVD 187
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 27/37 (72%)
Query: 82 NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLA 118
NL V+ LP++MSQ EL SLFS G + +++++ D +A
Sbjct: 60 NLIVNYLPQNMSQDELRSLFSSIGEVESAKLIRDKVA 96
>gi|148232140|ref|NP_001088628.1| ELAV-like protein 1-B [Xenopus laevis]
gi|82232943|sp|Q5U259.1|ELV1B_XENLA RecName: Full=ELAV-like protein 1-B; AltName: Full=Protein ElrA-B;
Short=ElrA
gi|55250533|gb|AAH86269.1| LOC495680 protein [Xenopus laevis]
Length = 326
Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 57/84 (67%), Positives = 71/84 (84%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
SLGYGFVNY +DAE+AINTLNGLRLQ+KTIKVS+ARPSSE+IK ANLY+SGLP+
Sbjct: 57 AGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSFARPSSETIKDANLYISGLPRT 116
Query: 92 MSQQELESLFSPYGRIITSRILCD 115
M+Q+++E +F P+G II SR+L D
Sbjct: 117 MTQKDVEDMFLPFGHIINSRVLVD 140
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 29/43 (67%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLA 118
+ I NL V+ LP++M+Q EL SLFS G + +++++ D +A
Sbjct: 15 DDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVA 57
Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 27/41 (65%)
Query: 30 ISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY 70
+T + G+GFV E+A AI +LNG RL +KT++VS+
Sbjct: 279 FNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKTLQVSF 319
>gi|149716413|ref|XP_001497933.1| PREDICTED: ELAV-like protein 1 [Equus caballus]
Length = 326
Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 58/84 (69%), Positives = 71/84 (84%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
SLGYGFVNY +DAE+A+NTLNGLRLQ+KTIKVSYARPSSE IK ANLY+SGLP+
Sbjct: 57 AGHSLGYGFVNYVTAKDAERAVNTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRT 116
Query: 92 MSQQELESLFSPYGRIITSRILCD 115
M+Q+++E +FS +GRII SR+L D
Sbjct: 117 MTQKDVEDMFSRFGRIINSRVLVD 140
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 71 ARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLA 118
A + I NL V+ LP++M+Q EL SLFS G + +++++ D +A
Sbjct: 10 AEDCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVA 57
>gi|432853220|ref|XP_004067599.1| PREDICTED: ELAV-like protein 1-like isoform 2 [Oryzias latipes]
Length = 335
Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 56/84 (66%), Positives = 71/84 (84%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
SLGYGFVN+ P DAE+AI+TLNGLRLQ+KTIKVS+ARPSS++IK ANLY+SGLP+
Sbjct: 68 AGHSLGYGFVNFVNPNDAERAISTLNGLRLQSKTIKVSFARPSSDTIKDANLYISGLPRT 127
Query: 92 MSQQELESLFSPYGRIITSRILCD 115
+ QQ+LE +F+ +GRII SR+L D
Sbjct: 128 LGQQDLEDMFASFGRIINSRVLVD 151
Score = 36.2 bits (82), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 26/37 (70%)
Query: 82 NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLA 118
NL V+ LP+ M+Q EL SLFS G + +++++ D +A
Sbjct: 32 NLIVNYLPQSMTQDELRSLFSSVGEVESAKLIRDKVA 68
Score = 35.4 bits (80), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 27/41 (65%)
Query: 30 ISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY 70
+T + G+GFV E+A AI++LNG R+ +K ++VS+
Sbjct: 288 FNTNKCKGFGFVTMTNYEEAAMAIHSLNGYRMGDKVLQVSF 328
>gi|432853218|ref|XP_004067598.1| PREDICTED: ELAV-like protein 1-like isoform 1 [Oryzias latipes]
Length = 356
Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 56/84 (66%), Positives = 71/84 (84%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
SLGYGFVN+ P DAE+AI+TLNGLRLQ+KTIKVS+ARPSS++IK ANLY+SGLP+
Sbjct: 89 AGHSLGYGFVNFVNPNDAERAISTLNGLRLQSKTIKVSFARPSSDTIKDANLYISGLPRT 148
Query: 92 MSQQELESLFSPYGRIITSRILCD 115
+ QQ+LE +F+ +GRII SR+L D
Sbjct: 149 LGQQDLEDMFASFGRIINSRVLVD 172
Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 26/37 (70%)
Query: 82 NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLA 118
NL V+ LP+ M+Q EL SLFS G + +++++ D +A
Sbjct: 53 NLIVNYLPQSMTQDELRSLFSSVGEVESAKLIRDKVA 89
Score = 35.4 bits (80), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 27/41 (65%)
Query: 30 ISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY 70
+T + G+GFV E+A AI++LNG R+ +K ++VS+
Sbjct: 309 FNTNKCKGFGFVTMTNYEEAAMAIHSLNGYRMGDKVLQVSF 349
>gi|390360288|ref|XP_003729672.1| PREDICTED: ELAV-like protein 2-like [Strongylocentrotus purpuratus]
Length = 385
Score = 125 bits (313), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 61/98 (62%), Positives = 76/98 (77%), Gaps = 2/98 (2%)
Query: 20 FSDAEICVFLIS--TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSES 77
F + E C + T QSLGYGFVNY +P DA KA+ TLNGLRLQ KTIKVS+ARPSS++
Sbjct: 61 FGEIESCKLVRDKLTGQSLGYGFVNYLKPADALKAVKTLNGLRLQCKTIKVSFARPSSQA 120
Query: 78 IKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
IK ANLY+SG+PKH Q +L++LF+ +GRII SR+L D
Sbjct: 121 IKDANLYISGIPKHYGQLDLDNLFNAFGRIICSRLLLD 158
Score = 35.8 bits (81), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 37 GYGFVNYHRPEDAEKAINTLNGLRLQNK-TIKVSYARPSSES 77
GYGFVN ++A AINTLNG +L K T++VS+ +S
Sbjct: 344 GYGFVNMLNYDEALSAINTLNGYQLNGKRTLQVSFKSSKQKS 385
Score = 35.4 bits (80), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 29/43 (67%)
Query: 82 NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKY 124
NL V+ LP++M+Q E++SLF +G I + +++ D L ++ Y
Sbjct: 39 NLIVNYLPQNMAQDEMKSLFGKFGEIESCKLVRDKLTGQSLGY 81
>gi|334350324|ref|XP_001371926.2| PREDICTED: ELAV-like protein 2-like [Monodelphis domestica]
Length = 522
Score = 124 bits (312), Expect = 9e-27, Method: Composition-based stats.
Identities = 60/88 (68%), Positives = 72/88 (81%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
ST QSLGYGFVNY P DAE+A+ LN L+ KTIKVS+ARPSS SI+ ANLYVSGLP+
Sbjct: 221 STGQSLGYGFVNYVDPRDAEQAVCLLNRLQCPPKTIKVSFARPSSSSIRDANLYVSGLPR 280
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLA 118
+M Q++LE LFSP+GRIITSRIL D ++
Sbjct: 281 NMMQKDLEQLFSPFGRIITSRILIDRVS 308
>gi|156366101|ref|XP_001626979.1| predicted protein [Nematostella vectensis]
gi|156213874|gb|EDO34879.1| predicted protein [Nematostella vectensis]
Length = 335
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 55/85 (64%), Positives = 70/85 (82%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T QSLGY FVNY P+DA KA+ +NG RLQNKT+KVS+ARPSS IK ANLY+SGLPK
Sbjct: 46 ATGQSLGYAFVNYDNPDDANKAVREMNGARLQNKTLKVSFARPSSTEIKNANLYISGLPK 105
Query: 91 HMSQQELESLFSPYGRIITSRILCD 115
M ++E+E+LF P+G+IITS++L D
Sbjct: 106 DMKEEEVEALFKPFGKIITSKVLKD 130
>gi|344247291|gb|EGW03395.1| ELAV-like protein 1 [Cricetulus griseus]
Length = 335
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/83 (69%), Positives = 71/83 (85%)
Query: 33 AQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHM 92
SLGYGFVNY +DAE+AI+TLNGLRLQ+KTIKVSYARPSSE IK ANLY+SGLP+ M
Sbjct: 50 GHSLGYGFVNYVTAKDAERAISTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTM 109
Query: 93 SQQELESLFSPYGRIITSRILCD 115
+Q+++E +FS +GRII SR+L D
Sbjct: 110 TQKDVEDMFSRFGRIINSRVLVD 132
Score = 38.5 bits (88), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 31/48 (64%)
Query: 71 ARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLA 118
A + I NL V+ LP++M+Q+EL SLFS G + +++++ D +A
Sbjct: 2 AEDCRDDIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVA 49
>gi|26347149|dbj|BAC37223.1| unnamed protein product [Mus musculus]
Length = 326
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/84 (69%), Positives = 71/84 (84%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
SLGYGFVNY +DAE+AI+TLNGLRLQ+KTIKVSYARPSSE IK ANLY+SGLP+
Sbjct: 57 AGHSLGYGFVNYVTAKDAERAISTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRT 116
Query: 92 MSQQELESLFSPYGRIITSRILCD 115
M+Q+++E +FS +GRII SR+L D
Sbjct: 117 MTQKDVEDMFSRFGRIINSRVLVD 140
>gi|93115150|gb|ABE98247.1| ELAV-like [Oreochromis mossambicus]
Length = 283
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 57/84 (67%), Positives = 71/84 (84%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
SLGYGFVN+ DAE+AI+TLNGLRLQ+KTIKVS+ARPSS++IK ANLY+SGLP+
Sbjct: 16 AGHSLGYGFVNFVNASDAERAISTLNGLRLQSKTIKVSFARPSSDAIKDANLYISGLPRT 75
Query: 92 MSQQELESLFSPYGRIITSRILCD 115
+SQQ++E +FS YGRII SR+L D
Sbjct: 76 LSQQDVEDMFSHYGRIINSRVLVD 99
Score = 36.2 bits (82), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 27/41 (65%)
Query: 30 ISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY 70
+T + G+GFV E+A AI++LNG RL +K ++VS+
Sbjct: 236 FNTNKCKGFGFVTMANYEEAAMAIHSLNGYRLGDKVLQVSF 276
>gi|26354232|dbj|BAC40744.1| unnamed protein product [Mus musculus]
Length = 305
Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/84 (69%), Positives = 71/84 (84%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
SLGYGFVNY +DAE+AI+TLNGLRLQ+KTIKVSYARPSSE IK ANLY+SGLP+
Sbjct: 36 AGHSLGYGFVNYVTAKDAERAISTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRT 95
Query: 92 MSQQELESLFSPYGRIITSRILCD 115
M+Q+++E +FS +GRII SR+L D
Sbjct: 96 MTQKDVEDMFSRFGRIINSRVLVD 119
>gi|74179923|dbj|BAE36520.1| unnamed protein product [Mus musculus]
Length = 308
Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/84 (69%), Positives = 71/84 (84%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
SLGYGFVNY +DAE+AI+TLNGLRLQ+KTIKVSYARPSSE IK ANLY+SGLP+
Sbjct: 39 AGHSLGYGFVNYVTAKDAERAISTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRT 98
Query: 92 MSQQELESLFSPYGRIITSRILCD 115
M+Q+++E +FS +GRII SR+L D
Sbjct: 99 MTQKDVEDMFSRFGRIINSRVLVD 122
>gi|358253025|dbj|GAA51417.1| ELAV like protein 2/3/4 [Clonorchis sinensis]
Length = 290
Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/88 (65%), Positives = 69/88 (78%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
++ QSLGYGFVNY DA +AI LN +R+QNK IKVS ARPS ESIKGANLY+ GLPK
Sbjct: 100 TSGQSLGYGFVNYVNASDARRAIKLLNRMRVQNKVIKVSLARPSCESIKGANLYICGLPK 159
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLA 118
M+++ELE LF G+IITSRILCDN+
Sbjct: 160 TMTEKELERLFQQCGKIITSRILCDNIT 187
>gi|26330019|dbj|BAC28748.1| unnamed protein product [Mus musculus]
Length = 326
Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/84 (69%), Positives = 71/84 (84%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
SLGYGFVNY +DAE+AI+TLNGLRLQ+KTIKVSYARPSSE IK ANLY+SGLP+
Sbjct: 57 AGHSLGYGFVNYVTAKDAERAISTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRT 116
Query: 92 MSQQELESLFSPYGRIITSRILCD 115
M+Q+++E +FS +GRII SR+L D
Sbjct: 117 MTQKDVEDMFSRFGRIINSRVLVD 140
Score = 38.5 bits (88), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 31/48 (64%)
Query: 71 ARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLA 118
A + I NL V+ LP++M+Q+EL SLFS G + +++++ D +A
Sbjct: 10 AEDCRDDIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVA 57
>gi|1655901|gb|AAB17967.1| elav G homolog [Mus musculus]
Length = 326
Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/84 (69%), Positives = 71/84 (84%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
SLGYGFVNY +DAE+AI+TLNGLRLQ+KTIKVSYARPSSE IK ANLY+SGLP+
Sbjct: 57 AGHSLGYGFVNYVTAKDAERAISTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRT 116
Query: 92 MSQQELESLFSPYGRIITSRILCD 115
M+Q+++E +FS +GRII SR+L D
Sbjct: 117 MTQKDVEDMFSRFGRIINSRVLVD 140
Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 28/37 (75%)
Query: 82 NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLA 118
NL V+ LP++M+Q+EL SLFS G + +++++ D +A
Sbjct: 21 NLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVA 57
>gi|31542602|ref|NP_034615.2| ELAV-like protein 1 [Mus musculus]
gi|157818153|ref|NP_001102318.1| ELAV-like protein 1 [Rattus norvegicus]
gi|354488231|ref|XP_003506274.1| PREDICTED: ELAV-like protein 1 [Cricetulus griseus]
gi|341940489|sp|P70372.2|ELAV1_MOUSE RecName: Full=ELAV-like protein 1; AltName: Full=Elav-like generic
protein; AltName: Full=Hu-antigen R; Short=HuR; AltName:
Full=MelG
gi|26348505|dbj|BAC37892.1| unnamed protein product [Mus musculus]
gi|83308037|emb|CAI77902.1| HuR RNA binding protein [Spalax judaei]
gi|148690049|gb|EDL21996.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu
antigen R), isoform CRA_a [Mus musculus]
gi|148690050|gb|EDL21997.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu
antigen R), isoform CRA_a [Mus musculus]
gi|149015619|gb|EDL75000.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu
antigen R) (predicted), isoform CRA_a [Rattus
norvegicus]
gi|149015620|gb|EDL75001.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu
antigen R) (predicted), isoform CRA_a [Rattus
norvegicus]
gi|197245826|gb|AAI68972.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu
antigen R) [Rattus norvegicus]
gi|208609536|dbj|BAG72208.1| HuR [Rattus norvegicus]
Length = 326
Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/84 (69%), Positives = 71/84 (84%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
SLGYGFVNY +DAE+AI+TLNGLRLQ+KTIKVSYARPSSE IK ANLY+SGLP+
Sbjct: 57 AGHSLGYGFVNYVTAKDAERAISTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRT 116
Query: 92 MSQQELESLFSPYGRIITSRILCD 115
M+Q+++E +FS +GRII SR+L D
Sbjct: 117 MTQKDVEDMFSRFGRIINSRVLVD 140
Score = 38.5 bits (88), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 31/48 (64%)
Query: 71 ARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLA 118
A + I NL V+ LP++M+Q+EL SLFS G + +++++ D +A
Sbjct: 10 AEDCRDDIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVA 57
>gi|26344670|dbj|BAC35984.1| unnamed protein product [Mus musculus]
Length = 326
Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/84 (69%), Positives = 71/84 (84%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
SLGYGFVNY +DAE+AI+TLNGLRLQ+KTIKVSYARPSSE IK ANLY+SGLP+
Sbjct: 57 AGHSLGYGFVNYVTAKDAERAISTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRT 116
Query: 92 MSQQELESLFSPYGRIITSRILCD 115
M+Q+++E +FS +GRII SR+L D
Sbjct: 117 MTQKDVEDMFSRFGRIINSRVLVD 140
Score = 38.5 bits (88), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 31/48 (64%)
Query: 71 ARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLA 118
A + I NL V+ LP++M+Q+EL SLFS G + +++++ D +A
Sbjct: 10 AEDCRDDIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVA 57
>gi|45382283|ref|NP_990164.1| ELAV-like protein 1 [Gallus gallus]
gi|5738249|gb|AAD50313.1|AF176673_1 RNA-binding protein HuA [Gallus gallus]
Length = 326
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/84 (69%), Positives = 70/84 (83%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
SLGYGFVNY +DAE+AINTLNGLRLQ+KTIKVSYARPSSE IK ANLY+SGLP+
Sbjct: 57 AGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRS 116
Query: 92 MSQQELESLFSPYGRIITSRILCD 115
M+Q+++ +FS +GRII SR+L D
Sbjct: 117 MTQKDVVDMFSRFGRIINSRVLVD 140
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 71 ARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLA 118
A + I NL V+ LP++M+Q EL SLFS G + +++++ D +A
Sbjct: 10 AEDCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVA 57
>gi|410053240|ref|XP_003316137.2| PREDICTED: LOW QUALITY PROTEIN: ELAV-like protein 3 [Pan
troglodytes]
Length = 447
Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats.
Identities = 61/86 (70%), Positives = 69/86 (80%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T SLG FV Y P+ A+KAINTL GL+LQ KTI+VSYARPSS SI+ ANLYVSGLPK
Sbjct: 192 TGVSLGXRFVKYSDPKKADKAINTLQGLKLQTKTIQVSYARPSSASIRDANLYVSGLPKT 251
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
MSQ+E+E LFS YGRIITSRIL D +
Sbjct: 252 MSQKEMEQLFSQYGRIITSRILVDQV 277
>gi|360043584|emb|CCD81130.1| elav (embryonic lethal, abnormal vision,drosophila)-like protein
[Schistosoma mansoni]
Length = 682
Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 60/84 (71%), Positives = 67/84 (79%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY DAE+AI LN +RLQNKTIKVS ARPS ESIKGANLY+ GLPK
Sbjct: 27 TGQSLGYGFVNYVDASDAERAIRALNKMRLQNKTIKVSLARPSCESIKGANLYICGLPKL 86
Query: 92 MSQQELESLFSPYGRIITSRILCD 115
M++ +LE LF P G+IITSRIL D
Sbjct: 87 MTESDLEKLFHPCGKIITSRILFD 110
>gi|353232427|emb|CCD79782.1| elav (embryonic lethal, abnormal vision,drosophila)-like protein
[Schistosoma mansoni]
Length = 535
Score = 122 bits (306), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 60/85 (70%), Positives = 68/85 (80%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T +SLGY FV Y +A++AI+ LNGL LQNKTIKVS ARP+ ESIKGANLY+SGLPK
Sbjct: 27 TGESLGYAFVKYSHSNEAQQAIHKLNGLSLQNKTIKVSLARPNCESIKGANLYISGLPKT 86
Query: 92 MSQQELESLFSPYGRIITSRILCDN 116
M Q ELE LFS YGRIIT+RIL DN
Sbjct: 87 MKQNELEQLFSQYGRIITARILYDN 111
>gi|312380126|gb|EFR26210.1| hypothetical protein AND_07855 [Anopheles darlingi]
Length = 388
Score = 122 bits (306), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 54/73 (73%), Positives = 64/73 (87%)
Query: 33 AQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHM 92
QSLGYGFVNYHRP+DAE+A+N LNGLRLQNK +KVS+ARPSSE IKGANLY+SGLPK +
Sbjct: 123 GQSLGYGFVNYHRPQDAEQAVNVLNGLRLQNKVLKVSFARPSSEGIKGANLYISGLPKTI 182
Query: 93 SQQELESLFSPYG 105
+Q+ELE+ P G
Sbjct: 183 TQEELETTLPPEG 195
>gi|256075727|ref|XP_002574168.1| elav (embryonic lethal abnormal vision drosophila)-like protein
[Schistosoma mansoni]
Length = 517
Score = 122 bits (305), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 60/85 (70%), Positives = 68/85 (80%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T +SLGY FV Y +A++AI+ LNGL LQNKTIKVS ARP+ ESIKGANLY+SGLPK
Sbjct: 27 TGESLGYAFVKYSHSNEAQQAIHKLNGLSLQNKTIKVSLARPNCESIKGANLYISGLPKT 86
Query: 92 MSQQELESLFSPYGRIITSRILCDN 116
M Q ELE LFS YGRIIT+RIL DN
Sbjct: 87 MKQNELEQLFSQYGRIITARILYDN 111
>gi|1144009|gb|AAC53000.1| mHuC-S, partial [Mus musculus]
Length = 275
Score = 122 bits (305), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 59/74 (79%), Positives = 64/74 (86%)
Query: 42 NYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQQELESLF 101
NY P DA+KAINTLNGL+LQ KTIKVSYARPSS SI+ ANLYVSGLPK MSQ+E+E LF
Sbjct: 1 NYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLF 60
Query: 102 SPYGRIITSRILCD 115
S YGRIITSRIL D
Sbjct: 61 SQYGRIITSRILLD 74
>gi|74138233|dbj|BAE28602.1| unnamed protein product [Mus musculus]
Length = 326
Score = 122 bits (305), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 57/84 (67%), Positives = 70/84 (83%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
SLGYGFVNY +DAE+AI+TLNGLRLQ+KTIKVSYA PSSE IK ANLY+SGLP+
Sbjct: 57 AGHSLGYGFVNYVTAKDAERAISTLNGLRLQSKTIKVSYAHPSSEVIKDANLYISGLPRT 116
Query: 92 MSQQELESLFSPYGRIITSRILCD 115
M+Q+++E +FS +GRII SR+L D
Sbjct: 117 MTQKDVEDMFSRFGRIINSRVLVD 140
Score = 38.5 bits (88), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 31/48 (64%)
Query: 71 ARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLA 118
A + I NL V+ LP++M+Q+EL SLFS G + +++++ D +A
Sbjct: 10 AEDCRDDIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVA 57
>gi|73965401|ref|XP_537585.2| PREDICTED: ELAV-like protein 1-like [Canis lupus familiaris]
Length = 326
Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 57/84 (67%), Positives = 69/84 (82%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
SLGYGF+NY +DAE+AINTLNGLRLQ+KTIKVSYARPSSE IK ANLY+SGLP+
Sbjct: 57 AGHSLGYGFLNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRT 116
Query: 92 MSQQELESLFSPYGRIITSRILCD 115
M+Q+++E FS + RII SR+L D
Sbjct: 117 MTQKDVEDTFSRFWRIINSRVLVD 140
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 71 ARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLA 118
A + I NL V+ LP++M+Q EL SLFS G + +++++ D +A
Sbjct: 10 AEDCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVA 57
>gi|349942059|dbj|GAA29907.1| ELAV like protein 2/3/4 [Clonorchis sinensis]
Length = 645
Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats.
Identities = 58/85 (68%), Positives = 69/85 (81%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
++ +SLGY FV ++ P DA KAI TLNGLRLQNKT+KVS ARPSSE+IKGANLY+ GLP+
Sbjct: 156 TSGESLGYAFVKFYDPLDAGKAIKTLNGLRLQNKTVKVSLARPSSEAIKGANLYICGLPR 215
Query: 91 HMSQQELESLFSPYGRIITSRILCD 115
M+Q ELE LFS G IIT+RIL D
Sbjct: 216 KMTQPELEKLFSACGHIITARILYD 240
Score = 37.7 bits (86), Expect = 1.7, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY-ARPSSESIK 79
T++ G+GFV E+A AI++LNG L N+ ++VS+ P+S+ +K
Sbjct: 567 TSKCKGFGFVTMSNYEEALLAIHSLNGFNLGNRVLQVSFKTTPNSKHMK 615
>gi|351701133|gb|EHB04052.1| ELAV-like protein 1 [Heterocephalus glaber]
Length = 224
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/84 (67%), Positives = 69/84 (82%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
SLGYGFVNY +DAE+AI TLNGLRL +KTIKVSYARPSSE IK ANLY+SGLP+
Sbjct: 57 AGHSLGYGFVNYVTAKDAERAICTLNGLRLPSKTIKVSYARPSSEVIKNANLYISGLPRT 116
Query: 92 MSQQELESLFSPYGRIITSRILCD 115
M+Q+++E +FS +GRII SR+L D
Sbjct: 117 MTQKDVEDMFSRFGRIINSRVLVD 140
Score = 39.7 bits (91), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLA 118
+ I+ NL V+ LP++M+Q EL SLFS G + +++++ D +A
Sbjct: 15 DDIRRMNLIVNCLPQNMTQDELRSLFSSIGEVESAKLIRDKVA 57
>gi|187097098|ref|NP_001119609.1| sex-lethal [Acyrthosiphon pisum]
gi|98986311|tpe|CAJ55783.1| TPA: sex-lethal [Acyrthosiphon pisum]
gi|239792967|dbj|BAH72757.1| ACYPI000005 [Acyrthosiphon pisum]
Length = 205
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 59/127 (46%), Positives = 81/127 (63%), Gaps = 13/127 (10%)
Query: 7 LNKLFTYEKVHLGFSDA---EICVFL--ISTAQSLGYGFVNYHRPEDAEKAINTLNGLRL 61
L + T +K+H F+ E C + + T S G+GFVN+ RPEDA KAI +NGL++
Sbjct: 16 LPQSMTDKKLHQMFTQIGQIEACRVMKDVKTGYSFGFGFVNFVRPEDASKAIEVMNGLQV 75
Query: 62 QNKTIKVSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATEN 121
+NK +KVSYARP+ E IK NLYV LP+ ++++ELE LF+PYG+I+ IL D
Sbjct: 76 ENKRLKVSYARPAGEDIKDTNLYVQNLPRSITERELEDLFAPYGQIVQKNILKDK----- 130
Query: 122 GKYYSGL 128
YSGL
Sbjct: 131 ---YSGL 134
>gi|399152199|emb|CCI89170.1| elav protein, partial [Sepia officinalis]
Length = 171
Score = 112 bits (279), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 56/115 (48%), Positives = 76/115 (66%)
Query: 2 VYQTLLNKLFTYEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRL 61
+ QTL ++ F + +G + V +T S G+GFV+Y + EDA++A+ TLNGL++
Sbjct: 8 IPQTLTDEEFRSMFLSIGPIKSAKIVRDKATGYSYGFGFVDYEKVEDAQRAMQTLNGLQM 67
Query: 62 QNKTIKVSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
QNKTIKV+ ARP E IKGANLYV LP+H Q +LE LF +G II SR+L D
Sbjct: 68 QNKTIKVALARPGGEEIKGANLYVRNLPRHYQQMDLERLFQRFGTIIQSRVLTDQ 122
>gi|196010401|ref|XP_002115065.1| hypothetical protein TRIADDRAFT_28658 [Trichoplax adhaerens]
gi|190582448|gb|EDV22521.1| hypothetical protein TRIADDRAFT_28658 [Trichoplax adhaerens]
Length = 309
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/82 (65%), Positives = 64/82 (78%)
Query: 34 QSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMS 93
SLGY FV Y DA KAI++LNGLRLQ+K IKVSYARPSS +IK ANLYVSGLP H +
Sbjct: 47 HSLGYAFVKYEDVADANKAISSLNGLRLQSKVIKVSYARPSSAAIKNANLYVSGLPLHYT 106
Query: 94 QQELESLFSPYGRIITSRILCD 115
Q+L++LF YG IITS++L D
Sbjct: 107 HQDLDNLFGQYGAIITSKVLYD 128
Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 30/41 (73%)
Query: 75 SESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+E I +NL V+ LP+ M+Q E++SLFS G++I+ +++ D
Sbjct: 2 AEKIDQSNLIVNYLPQSMTQDEIQSLFSSCGKVISCKLVRD 42
>gi|389612935|dbj|BAM19862.1| RNA-binding protein [Papilio xuthus]
Length = 360
Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/90 (63%), Positives = 70/90 (77%), Gaps = 1/90 (1%)
Query: 30 ISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLP 89
I QSLGY FVNYH+ EDAEKA+NTLNGLRLQNK IKVSYARPSS++IKGANLYVSGLP
Sbjct: 72 ILNGQSLGYAFVNYHKAEDAEKAVNTLNGLRLQNKVIKVSYARPSSDAIKGANLYVSGLP 131
Query: 90 K-HMSQQELESLFSPYGRIITSRILCDNLA 118
+ + + + E+L + R RIL +N++
Sbjct: 132 QTYDTARPGEALQPLWDRSSAPRILHENVS 161
>gi|399152197|emb|CCI89169.1| elav protein, partial [Sepia officinalis]
Length = 229
Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/84 (67%), Positives = 62/84 (73%)
Query: 30 ISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLP 89
+ + QSLGYGFVNY P DAEKAINTLNGLRLQNKTIKVSYA PSSESIKGANL + G
Sbjct: 65 LESGQSLGYGFVNYKYPSDAEKAINTLNGLRLQNKTIKVSYAPPSSESIKGANLNIGGFA 124
Query: 90 KHMSQQELESLFSPYGRIITSRIL 113
K +Q EL P G + SRIL
Sbjct: 125 KSFTQLELGKFVFPVGILKHSRIL 148
>gi|341871451|gb|AEK99643.1| ElaV [Pomatoceros lamarckii]
Length = 212
Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 49/70 (70%), Positives = 61/70 (87%)
Query: 46 PEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPYG 105
P+ AEKA+ LNGLRLQNKTIKVS+ARPS E+IKGANLY+SG+PK M+Q +L++LF+ G
Sbjct: 3 PDGAEKAVKNLNGLRLQNKTIKVSHARPSCENIKGANLYISGIPKTMTQADLDTLFAKCG 62
Query: 106 RIITSRILCD 115
IIT+RILCD
Sbjct: 63 NIITTRILCD 72
>gi|239938030|gb|ACS36114.1| RNA-binding protein Elav2 [Capitella teleta]
Length = 341
Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 60/112 (53%), Positives = 75/112 (66%), Gaps = 1/112 (0%)
Query: 4 QTLLNKLFTYEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQN 63
QTL ++ F + +G A V T S G+GFV+Y+ DA KAI TLNGL+LQN
Sbjct: 28 QTLTDEEFRSMFLAIGPVKASKIVRDKMTGYSYGFGFVDYNLESDASKAIQTLNGLQLQN 87
Query: 64 KTIKVSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
K IKV+Y+R S E IKGANLYV +P+ M+Q ELE +FSP+G II SRIL D
Sbjct: 88 KRIKVAYSR-SGEQIKGANLYVRNIPRTMTQNELEEIFSPHGEIIQSRILTD 138
>gi|443690134|gb|ELT92349.1| hypothetical protein CAPTEDRAFT_169706 [Capitella teleta]
Length = 383
Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 60/112 (53%), Positives = 75/112 (66%), Gaps = 1/112 (0%)
Query: 4 QTLLNKLFTYEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQN 63
QTL ++ F + +G A V T S G+GFV+Y+ DA KAI TLNGL+LQN
Sbjct: 70 QTLTDEEFRSMFLAIGPVKASKIVRDKMTGYSYGFGFVDYNLESDASKAIQTLNGLQLQN 129
Query: 64 KTIKVSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
K IKV+Y+R S E IKGANLYV +P+ M+Q ELE +FSP+G II SRIL D
Sbjct: 130 KRIKVAYSR-SGEQIKGANLYVRNIPRTMTQNELEEIFSPHGEIIQSRILTD 180
>gi|242531301|gb|ACS92975.1| Elav [Ptychodera flava]
Length = 216
Score = 108 bits (271), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 50/67 (74%), Positives = 61/67 (91%)
Query: 51 KAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITS 110
KA+NTLNGLRLQ KTIKVS+ARPSS++IK ANLYV GLPK+M+Q++LE +F P GRIITS
Sbjct: 1 KAMNTLNGLRLQAKTIKVSHARPSSQAIKDANLYVCGLPKNMTQKDLEEMFEPVGRIITS 60
Query: 111 RILCDNL 117
RILCD++
Sbjct: 61 RILCDSV 67
>gi|241752336|ref|XP_002401050.1| RNA-binding protein precursor, putative [Ixodes scapularis]
gi|215508305|gb|EEC17759.1| RNA-binding protein precursor, putative [Ixodes scapularis]
Length = 195
Score = 108 bits (270), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 56/123 (45%), Positives = 78/123 (63%)
Query: 4 QTLLNKLFTYEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQN 63
QTL ++ F +G + V +T S G+GFV+Y EDA +A+ TLNGL+LQN
Sbjct: 19 QTLTDEEFRSLFTSIGPIKSSKIVRHKATGYSYGFGFVDYQSIEDAARAVGTLNGLQLQN 78
Query: 64 KTIKVSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGK 123
K IKV+YARP E+IK ANLY+ G+PKH ++ E LF+ +GR+I R+L D+ + N
Sbjct: 79 KKIKVAYARPGGETIKHANLYIRGIPKHYPPEQAEKLFADFGRLIQFRVLKDDSGSGNKG 138
Query: 124 YYS 126
Y S
Sbjct: 139 YGS 141
Score = 35.8 bits (81), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARP 73
ST S G+GFV +D AI LNG R + ++VS+ +P
Sbjct: 152 STGLSKGFGFVTMANYQDCVWAIEALNGFRYAGRPLQVSFKQP 194
>gi|340383337|ref|XP_003390174.1| PREDICTED: ELAV-like protein 3-like [Amphimedon queenslandica]
Length = 392
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/85 (60%), Positives = 65/85 (76%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
S+ SLGYGFVNY E+AE AI +NG L++KT+KVSYARPSS +IK AN+YV+ LP
Sbjct: 60 SSGISLGYGFVNYGSAEEAEHAIQKMNGTTLESKTLKVSYARPSSVAIKNANVYVANLPP 119
Query: 91 HMSQQELESLFSPYGRIITSRILCD 115
+S EL++LF PYG IITS++L D
Sbjct: 120 QLSLTELDALFQPYGTIITSKVLTD 144
>gi|325296731|ref|NP_001191601.1| ELAV 2-like protein [Aplysia californica]
gi|65307079|gb|AAY42042.1| ELAV 2-like protein [Aplysia californica]
Length = 325
Score = 105 bits (263), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 53/112 (47%), Positives = 72/112 (64%)
Query: 4 QTLLNKLFTYEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQN 63
QTL ++ F + +G + V ST S G+GFV++ P DA++AI TL+GL+LQN
Sbjct: 27 QTLTDEEFRSMFLSVGPVKSSKIVRDKSTGYSYGFGFVDFQHPTDAQRAIETLSGLQLQN 86
Query: 64 KTIKVSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
K IKV+ ARP + IKGANLY+ LP + EL +F PYG+II SR+L D
Sbjct: 87 KRIKVALARPGGDQIKGANLYIRNLPVAWKETELNKIFEPYGKIIQSRVLVD 138
>gi|242025166|ref|XP_002432997.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212518506|gb|EEB20259.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 211
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 47/86 (54%), Positives = 65/86 (75%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T S G+GFV Y + EDA +AI TLNGL++QNK +KVSYARP+ + IK NLYV+ LPK+
Sbjct: 55 TGYSYGFGFVKYCKEEDASRAIGTLNGLQVQNKRLKVSYARPAGDDIKDTNLYVTNLPKN 114
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
+++QEL+++F PYG I+ IL D +
Sbjct: 115 ITEQELDNIFGPYGFIVQKNILKDKV 140
>gi|449684824|ref|XP_002156791.2| PREDICTED: ELAV-like protein 2-like, partial [Hydra magnipapillata]
Length = 354
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/91 (58%), Positives = 62/91 (68%), Gaps = 4/91 (4%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T SLGY FVNY P DA KAI++L G++L KTIKVSYARPSS IK ANLY+SGLP+
Sbjct: 52 TKASLGYAFVNYQHPNDARKAIHSLQGMKLTTKTIKVSYARPSSNEIKNANLYISGLPQT 111
Query: 92 MSQQELESLFSPYGRIITSRILCDNLATENG 122
L LF +G IITS++L D ENG
Sbjct: 112 CDAIRLRELFQFFGEIITSKVLVD----ENG 138
>gi|427782345|gb|JAA56624.1| Putative rna-binding protein elav/hu rrm superfamily [Rhipicephalus
pulchellus]
Length = 319
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/91 (50%), Positives = 64/91 (70%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T S G+GFV+Y DA +A+ +LNGL+LQNK IKV+YARP E+IK ANLY+ G+PK
Sbjct: 46 ATGYSYGFGFVDYQGAGDAARAVESLNGLQLQNKKIKVAYARPGGETIKHANLYIRGIPK 105
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATEN 121
H ++ E LF+ +GR+I R+L D+ N
Sbjct: 106 HFPPEQAEKLFADFGRLIQFRVLKDDAGQSN 136
>gi|345479144|ref|XP_003423885.1| PREDICTED: sex-lethal homolog isoform 1 [Nasonia vitripennis]
Length = 277
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 47/86 (54%), Positives = 66/86 (76%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T S G+GFVNY + EDA AINTLNGL++QNK +KVS+ARPS E IK NLYV+ LP++
Sbjct: 75 TGYSYGFGFVNYTKAEDALTAINTLNGLQVQNKRLKVSFARPSGEEIKETNLYVTNLPRN 134
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
++++++E +FS +G+I+ IL D L
Sbjct: 135 ITEKQVEEIFSKFGQIVQKNILKDKL 160
>gi|345479148|ref|XP_003423887.1| PREDICTED: sex-lethal homolog isoform 3 [Nasonia vitripennis]
Length = 376
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 47/87 (54%), Positives = 66/87 (75%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T S G+GFVNY + EDA AINTLNGL++QNK +KVS+ARPS E IK NLYV+ LP++
Sbjct: 119 TGYSYGFGFVNYTKAEDALTAINTLNGLQVQNKRLKVSFARPSGEEIKETNLYVTNLPRN 178
Query: 92 MSQQELESLFSPYGRIITSRILCDNLA 118
++++++E +FS +G+I+ IL D L
Sbjct: 179 ITEKQVEEIFSKFGQIVQKNILKDKLT 205
>gi|345479146|ref|XP_003423886.1| PREDICTED: sex-lethal homolog isoform 2 [Nasonia vitripennis]
Length = 393
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 47/87 (54%), Positives = 66/87 (75%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T S G+GFVNY + EDA AINTLNGL++QNK +KVS+ARPS E IK NLYV+ LP++
Sbjct: 136 TGYSYGFGFVNYTKAEDALTAINTLNGLQVQNKRLKVSFARPSGEEIKETNLYVTNLPRN 195
Query: 92 MSQQELESLFSPYGRIITSRILCDNLA 118
++++++E +FS +G+I+ IL D L
Sbjct: 196 ITEKQVEEIFSKFGQIVQKNILKDKLT 222
>gi|221104585|ref|XP_002169901.1| PREDICTED: ELAV-like protein 2-like [Hydra magnipapillata]
Length = 339
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 48/92 (52%), Positives = 65/92 (70%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T QSLGY F+ Y + AE+AIN L+G+ LQ+K +KVSYARPSS IK +N+YV+GLP
Sbjct: 50 TTGQSLGYAFIEYPTAQLAEEAINQLDGMTLQDKKLKVSYARPSSTEIKNSNVYVAGLPS 109
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ + L SLF+P+G IIT +IL D + G
Sbjct: 110 WVDEDRLLSLFAPFGSIITHKILTDAASKSRG 141
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 52/120 (43%), Gaps = 30/120 (25%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKT--IKVSYARPSSE------------ 76
+ ++S G GFV Y DAEKAI ++ G L + T + V A P +
Sbjct: 135 AASKSRGVGFVRYSLKSDAEKAIESMAGKVLPDSTTALIVKLAIPPASKQLAAAAAAAQP 194
Query: 77 --SIKGA--------------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATE 120
SI G +YV GL H S+ L LF+P+G I+ +++ DN E
Sbjct: 195 LNSIAGVPKQIVQYNPMSLSNPVYVYGLQPHHSELTLYELFAPFGGILNVKLIRDNAKPE 254
>gi|332029988|gb|EGI69813.1| Sex-lethal-like protein [Acromyrmex echinatior]
Length = 365
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 47/86 (54%), Positives = 64/86 (74%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T S G+GFVNY + EDA AI+TLNGL++QNK +KVS+ARPS E IK NLYV+ LP++
Sbjct: 132 TGYSYGFGFVNYAKAEDAATAISTLNGLQVQNKRLKVSFARPSGEEIKETNLYVTNLPRN 191
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
+++ +++ LFS YG I+ IL D L
Sbjct: 192 ITESQIDELFSKYGNIVQKNILRDKL 217
>gi|221121672|ref|XP_002156905.1| PREDICTED: ELAV-like protein 2-like [Hydra magnipapillata]
Length = 339
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/92 (52%), Positives = 64/92 (69%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T QSLGY F+ Y + AE AIN L+G+ LQ+K +KVSYARPSS IK +N+YV+GLP
Sbjct: 50 TTGQSLGYAFIEYPTAQLAEDAINQLDGMTLQDKKLKVSYARPSSTEIKNSNVYVAGLPS 109
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ + L SLF+P+G IIT +IL D + G
Sbjct: 110 WVDEDRLLSLFAPFGSIITHKILTDAASKSRG 141
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 52/120 (43%), Gaps = 30/120 (25%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKT--IKVSYARPSSE------------ 76
+ ++S G GFV Y DAEKAI ++ G L + T + V A P +
Sbjct: 135 AASKSRGVGFVRYSLKSDAEKAIESMAGKVLPDSTTALIVKLAIPPASKQLAAAAAAAQP 194
Query: 77 --SIKGA--------------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATE 120
SI G +YV GL H S+ L LF+P+G I+ +++ DN E
Sbjct: 195 LNSIAGVPKQIVQYNPMSLSNPVYVYGLQPHHSELTLYELFAPFGGILNVKLIRDNAKPE 254
>gi|313230196|emb|CBY07900.1| unnamed protein product [Oikopleura dioica]
Length = 423
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/114 (46%), Positives = 74/114 (64%), Gaps = 8/114 (7%)
Query: 4 QTLLNKLFTYEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRL 61
Q L +LF+ D E C T SLGYGFVN+ R DA++A+++ NGL +
Sbjct: 133 QDQLRELFS------SIGDIETCKLCRHRETKMSLGYGFVNFRRSSDAKRAVDSFNGLSI 186
Query: 62 QNKTIKVSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
Q K+IKVSYARPSS IK NLYV+G+P+ ++ E+++LF G+II++RIL D
Sbjct: 187 QTKSIKVSYARPSSNIIKNTNLYVAGIPRSITLAEIKNLFGRLGKIISARILHD 240
>gi|328783793|ref|XP_003250344.1| PREDICTED: sex-lethal homolog [Apis mellifera]
Length = 346
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/86 (53%), Positives = 64/86 (74%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T S G+GFVNY + EDA AI+TLNGL++QNK +KVS+ARPS E IK NLYV+ LP++
Sbjct: 122 TGYSYGFGFVNYAKAEDAATAISTLNGLQVQNKRLKVSFARPSGEEIKETNLYVTNLPRN 181
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
+++ +++ +FS YG I+ IL D L
Sbjct: 182 ITESQIDDIFSKYGNIVQKNILKDKL 207
>gi|383859290|ref|XP_003705128.1| PREDICTED: sex-lethal homolog [Megachile rotundata]
Length = 386
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/86 (53%), Positives = 64/86 (74%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T S G+GFVNY + EDA AINTLNGL++QNK +KVS+ARPS E IK NLYV+ LP++
Sbjct: 150 TGYSYGFGFVNYAKAEDAATAINTLNGLQVQNKRLKVSFARPSGEEIKETNLYVTNLPRN 209
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
+++ +++ +FS YG I+ IL D +
Sbjct: 210 ITESQIDDIFSKYGNIVQKNILKDKI 235
>gi|307199187|gb|EFN79874.1| Protein sex-lethal [Harpegnathos saltator]
Length = 217
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/86 (53%), Positives = 64/86 (74%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T S G+GFVNY + EDA AI+TLNGL++QNK +KVS+ARPS E IK NLYV+ LP++
Sbjct: 66 TGYSYGFGFVNYAKAEDAATAISTLNGLQVQNKRLKVSFARPSGEEIKETNLYVTNLPRN 125
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
+++ +++ +FS YG I+ IL D L
Sbjct: 126 ITESQIDEIFSKYGNIVQKNILKDKL 151
>gi|307176221|gb|EFN65860.1| Sex-lethal-like protein [Camponotus floridanus]
Length = 272
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/86 (53%), Positives = 64/86 (74%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T S G+GFVNY + EDA AI+TLNGL++QNK +KVS+ARPS E IK NLYV+ LP++
Sbjct: 27 TGYSYGFGFVNYAKAEDAATAISTLNGLQVQNKRLKVSFARPSGEEIKETNLYVTNLPRN 86
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
+++ +++ +FS YG I+ IL D L
Sbjct: 87 ITESQIDEIFSKYGNIVQKNILKDKL 112
>gi|350411267|ref|XP_003489292.1| PREDICTED: protein sex-lethal-like [Bombus impatiens]
Length = 356
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/86 (53%), Positives = 64/86 (74%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T S G+GFVNY + EDA AI+TLNGL++QNK +KVS+ARPS E IK NLYV+ LP++
Sbjct: 122 TGYSYGFGFVNYAKAEDAATAISTLNGLQVQNKRLKVSFARPSGEEIKETNLYVTNLPRN 181
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
+++ +++ +FS YG I+ IL D L
Sbjct: 182 ITESQIDDIFSKYGNIVQKNILKDKL 207
>gi|340729596|ref|XP_003403084.1| PREDICTED: protein sex-lethal-like [Bombus terrestris]
Length = 356
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/86 (53%), Positives = 64/86 (74%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T S G+GFVNY + EDA AI+TLNGL++QNK +KVS+ARPS E IK NLYV+ LP++
Sbjct: 122 TGYSYGFGFVNYAKAEDAATAISTLNGLQVQNKRLKVSFARPSGEEIKETNLYVTNLPRN 181
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
+++ +++ +FS YG I+ IL D L
Sbjct: 182 ITESQIDDIFSKYGNIVQKNILKDKL 207
>gi|357631741|gb|EHJ79210.1| sex-lethal [Danaus plexippus]
Length = 333
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 46/86 (53%), Positives = 61/86 (70%)
Query: 30 ISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLP 89
T S G+GFVN+ R EDA +AI T NG +L+NK +KVSYARPS E IK NLYV+ LP
Sbjct: 96 FKTGYSYGFGFVNFTREEDAARAIETFNGYQLRNKRLKVSYARPSGEDIKETNLYVTNLP 155
Query: 90 KHMSQQELESLFSPYGRIITSRILCD 115
+ +++ +LE++F YGRI+ IL D
Sbjct: 156 RAITEDQLETIFGKYGRIVQKHILRD 181
>gi|89885655|dbj|BAE86938.1| sex-lethal [Bombyx mori]
Length = 336
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/102 (49%), Positives = 67/102 (65%), Gaps = 3/102 (2%)
Query: 24 EICVFL--ISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGA 81
E C + T S G+GFVN+ R EDA +AI+T NG +L+NK +KVSYARPS + IK
Sbjct: 90 ESCRVMKDFKTGYSYGFGFVNFTREEDAARAIDTFNGYQLRNKRLKVSYARPSGDDIKET 149
Query: 82 NLYVSGLPKHMSQQELESLFSPYGRIITSRILCD-NLATENG 122
NLYV+ LP+ ++ +LE++F YGRI+ IL D N T G
Sbjct: 150 NLYVTNLPRAITDDQLETIFGKYGRIVQKHILRDKNSGTPRG 191
>gi|112734730|ref|NP_001036780.1| sex-lethal isoform L [Bombyx mori]
gi|77379388|gb|ABA71351.1| sex-lethal isoform 1 [Bombyx mori]
Length = 336
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/102 (49%), Positives = 67/102 (65%), Gaps = 3/102 (2%)
Query: 24 EICVFL--ISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGA 81
E C + T S G+GFVN+ R EDA +AI+T NG +L+NK +KVSYARPS + IK
Sbjct: 90 ESCRVMKDFKTGYSYGFGFVNFTREEDAARAIDTFNGYQLRNKRLKVSYARPSGDDIKET 149
Query: 82 NLYVSGLPKHMSQQELESLFSPYGRIITSRILCD-NLATENG 122
NLYV+ LP+ ++ +LE++F YGRI+ IL D N T G
Sbjct: 150 NLYVTNLPRAITDDQLETIFGKYGRIVQKHILRDKNSGTPRG 191
>gi|290563184|ref|NP_001166854.1| sex-lethal isoform S [Bombyx mori]
gi|89885657|dbj|BAE86939.1| sex-lethal [Bombyx mori]
Length = 290
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/102 (49%), Positives = 67/102 (65%), Gaps = 3/102 (2%)
Query: 24 EICVFL--ISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGA 81
E C + T S G+GFVN+ R EDA +AI+T NG +L+NK +KVSYARPS + IK
Sbjct: 44 ESCRVMKDFKTGYSYGFGFVNFTREEDAARAIDTFNGYQLRNKRLKVSYARPSGDDIKET 103
Query: 82 NLYVSGLPKHMSQQELESLFSPYGRIITSRILCD-NLATENG 122
NLYV+ LP+ ++ +LE++F YGRI+ IL D N T G
Sbjct: 104 NLYVTNLPRAITDDQLETIFGKYGRIVQKHILRDKNSGTPRG 145
>gi|77379390|gb|ABA71352.1| sex-lethal isoform 2 [Bombyx mori]
Length = 313
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/102 (49%), Positives = 67/102 (65%), Gaps = 3/102 (2%)
Query: 24 EICVFL--ISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGA 81
E C + T S G+GFVN+ R EDA +AI+T NG +L+NK +KVSYARPS + IK
Sbjct: 90 ESCRVMKDFKTGYSYGFGFVNFTREEDAARAIDTFNGYQLRNKRLKVSYARPSGDDIKET 149
Query: 82 NLYVSGLPKHMSQQELESLFSPYGRIITSRILCD-NLATENG 122
NLYV+ LP+ ++ +LE++F YGRI+ IL D N T G
Sbjct: 150 NLYVTNLPRAITDDQLETIFGKYGRIVQKHILRDKNSGTPRG 191
>gi|221112748|ref|XP_002162771.1| PREDICTED: ELAV-like protein 3-like [Hydra magnipapillata]
Length = 376
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 48/82 (58%), Positives = 57/82 (69%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T SLGY FVNY DA KAI +L G++L NKTIKVS ARPS IK ANLYVSGLP
Sbjct: 82 TRASLGYAFVNYQHAADARKAIESLQGMKLTNKTIKVSVARPSCTEIKNANLYVSGLPLT 141
Query: 92 MSQQELESLFSPYGRIITSRIL 113
++ +L LF+ YG IIT ++L
Sbjct: 142 CNENDLRELFASYGSIITIKVL 163
Score = 35.8 bits (81), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Query: 25 ICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQN-----KTIKVSYARPSSESIK 79
I V + QS G GFV + + DAE AIN LN R+ K + V +A P S+ I+
Sbjct: 160 IKVLYEESGQSRGVGFVRFDKRNDAEAAINGLNN-RIPEINGAIKPLTVKFANPPSQKIQ 218
>gi|225713126|gb|ACO12409.1| Sex-lethal homolog [Lepeophtheirus salmonis]
gi|290561258|gb|ADD38031.1| Sex-lethal homolog [Lepeophtheirus salmonis]
Length = 255
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 44/81 (54%), Positives = 64/81 (79%)
Query: 35 SLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQ 94
S GYGFV+Y P+DA++AI TL+GL +QNKTIKVSYARP++E IK +NLY++ L +++
Sbjct: 70 SFGYGFVHYENPKDAKRAIETLSGLAIQNKTIKVSYARPNTELIKDSNLYIANLGCSVTE 129
Query: 95 QELESLFSPYGRIITSRILCD 115
+ + S+FS YG+I+T +L D
Sbjct: 130 EAIHSMFSTYGKIVTLNLLKD 150
>gi|326432018|gb|EGD77588.1| hypothetical protein PTSG_08685 [Salpingoeca sp. ATCC 50818]
Length = 517
Score = 96.3 bits (238), Expect = 4e-18, Method: Composition-based stats.
Identities = 42/84 (50%), Positives = 62/84 (73%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T +SLGYGFV + E+A +AI +NG + NK +KVS ARPSS SI GANLY+ LP+
Sbjct: 121 THKSLGYGFVEFETAEEAARAIQAMNGRQYMNKRLKVSIARPSSSSITGANLYIKNLPRT 180
Query: 92 MSQQELESLFSPYGRIITSRILCD 115
+++ +L ++F+P+G II++R+L D
Sbjct: 181 ITEDQLRAIFNPFGEIISARLLYD 204
>gi|242013287|ref|XP_002427343.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212511696|gb|EEB14605.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 371
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 78/115 (67%), Gaps = 8/115 (6%)
Query: 4 QTLLNKLFTYEKVHLGFSDAEICVFLIS--TAQSLGYGFVNYHRPEDAEKAINTLNGLRL 61
QT L K+F F + E C +++ + S+GYGFV + +DA+ A++ L+GL L
Sbjct: 38 QTDLQKMFE------SFGEIESCKLIMNKVSGHSMGYGFVKFKNHKDAQNALSNLDGLLL 91
Query: 62 QNKTIKVSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
Q+K IKVS+ARP++E IK AN+YVSGL +++ +L ++FS YG+++T +++ +N
Sbjct: 92 QHKKIKVSFARPANEPIKTANVYVSGLKNTITEADLINMFSKYGKVLTVKVMNNN 146
>gi|321464387|gb|EFX75395.1| sex-lethal protein variant 2 [Daphnia pulex]
Length = 297
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/86 (51%), Positives = 61/86 (70%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T S G+GFVNY + +DA +AI TLNGL++QNK IKVSYARP E K NLYV+ LP+
Sbjct: 64 TGYSYGFGFVNYQKADDAIRAIQTLNGLQIQNKRIKVSYARPPGEDRKETNLYVTNLPRD 123
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
+++ EL ++FS +G I+ +L D +
Sbjct: 124 VTEDELTNIFSAHGNIVQMNLLKDKI 149
>gi|345433354|dbj|BAK69334.1| RNA binding protein Elav [Balanoglossus simodensis]
Length = 233
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/84 (58%), Positives = 60/84 (71%), Gaps = 14/84 (16%)
Query: 60 RLQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLA- 118
RLQ KTIKVS+ARPSS++IK ANLYV GLPK M+Q++LE +F P GRIITSRILCD++
Sbjct: 1 RLQAKTIKVSHARPSSQAIKDANLYVCGLPKSMTQKDLEEMFEPVGRIITSRILCDSITG 60
Query: 119 --------TENGKYYSGLGGRERL 134
TE GK+ G E+L
Sbjct: 61 IWESRPHDTEKGKH-----GNEKL 79
>gi|167523433|ref|XP_001746053.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163775324|gb|EDQ88948.1| predicted protein [Monosiga brevicollis MX1]
Length = 635
Score = 92.0 bits (227), Expect = 8e-17, Method: Composition-based stats.
Identities = 44/92 (47%), Positives = 60/92 (65%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T +SLGYGFV Y A KA + LN +++NK +KVS+ARPSS +I ANLY+ GLP
Sbjct: 224 ATGKSLGYGFVEYEDENGATKAADALNEFQIENKRLKVSFARPSSSTITNANLYIKGLPT 283
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENG 122
+++Q L +FS G II+ R+L D T G
Sbjct: 284 TINEQSLTDMFSSCGDIISVRVLYDRNGTPKG 315
>gi|195133248|ref|XP_002011051.1| GI16327 [Drosophila mojavensis]
gi|193907026|gb|EDW05893.1| GI16327 [Drosophila mojavensis]
Length = 716
Score = 91.7 bits (226), Expect = 9e-17, Method: Composition-based stats.
Identities = 43/86 (50%), Positives = 59/86 (68%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T S GYGFV+Y+ D+E+AI LNG ++NK +KVSYARP +SIK NLYV L ++
Sbjct: 287 TGYSFGYGFVDYNSEVDSEEAIQKLNGFYVRNKRLKVSYARPGGQSIKDTNLYVINLSRN 346
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
++ +L+ +FSPYG I+ IL D L
Sbjct: 347 INDDQLDRIFSPYGLIVQRNILRDKL 372
>gi|198425734|ref|XP_002119812.1| PREDICTED: similar to HUC, partial [Ciona intestinalis]
Length = 408
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 64/95 (67%), Gaps = 4/95 (4%)
Query: 35 SLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQ 94
S GYGFV+Y +PEDA+KAI LNG +Q+KTIKV++++P+ K NLYV+GL S+
Sbjct: 123 SFGYGFVDYVKPEDADKAIQQLNGHPIQHKTIKVAFSKPAGADSKNINLYVAGLNPDTSE 182
Query: 95 QELESLFSPYGRIITSRILCDNLATENGKYYSGLG 129
+ L+ FS YG II +R+L D +N SG+G
Sbjct: 183 ESLKQRFSSYGTIIQTRVLKD----KNTNLCSGIG 213
>gi|321464386|gb|EFX75394.1| sex-lethal protein variant 1 [Daphnia pulex]
Length = 263
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/87 (50%), Positives = 61/87 (70%), Gaps = 1/87 (1%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLP-K 90
T S G+GFVNY + +DA +AI TLNGL++QNK IKVSYARP E K NLYV+ LP +
Sbjct: 64 TGYSYGFGFVNYQKADDAIRAIQTLNGLQIQNKRIKVSYARPPGEDRKETNLYVTNLPSR 123
Query: 91 HMSQQELESLFSPYGRIITSRILCDNL 117
+++ EL ++FS +G I+ +L D +
Sbjct: 124 DVTEDELTNIFSAHGNIVQMNLLKDKI 150
>gi|198470946|ref|XP_002133619.1| GA22715 [Drosophila pseudoobscura pseudoobscura]
gi|198145693|gb|EDY72246.1| GA22715 [Drosophila pseudoobscura pseudoobscura]
Length = 672
Score = 90.9 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 44/86 (51%), Positives = 57/86 (66%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T S GYGFV+Y D E+AI+ LNGL ++NK +KVSYARP +SIK NLYV LP++
Sbjct: 157 TGYSFGYGFVDYRTEADTEEAIDKLNGLYVRNKRLKVSYARPGGQSIKDTNLYVINLPRN 216
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
+ L FSP+G+I+ IL D L
Sbjct: 217 IDDDMLTRTFSPFGQIVQRNILRDKL 242
>gi|2565362|gb|AAB81985.1| Sex-lethal protein [Musca domestica]
Length = 318
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/86 (50%), Positives = 57/86 (66%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T S GY FV++ DA+ AI T+NG+ ++NK +KVSYARP ESIK NLYV+ LP+
Sbjct: 132 TGYSFGYAFVDFASEIDAQNAIKTVNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRT 191
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
++ ELE +F YG I+ IL D L
Sbjct: 192 ITDDELEKIFGKYGNIVQKNILRDKL 217
Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 27/41 (65%)
Query: 75 SESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
++++ G NL V+ LP+ M+ +EL +LF G I T RI+ D
Sbjct: 89 TQAVNGTNLIVNYLPQDMTDRELYALFRTCGPINTCRIMKD 129
>gi|6226777|sp|O17310.1|SXL_MUSDO RecName: Full=Sex-lethal homolog
gi|2565364|gb|AAB81986.1| Sex-lethal protein [Musca domestica]
Length = 324
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/86 (50%), Positives = 57/86 (66%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T S GY FV++ DA+ AI T+NG+ ++NK +KVSYARP ESIK NLYV+ LP+
Sbjct: 139 TGYSFGYAFVDFASEIDAQNAIKTVNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRT 198
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
++ ELE +F YG I+ IL D L
Sbjct: 199 ITDDELEKIFGKYGNIVQKNILRDKL 224
Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 27/41 (65%)
Query: 75 SESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
++++ G NL V+ LP+ M+ +EL +LF G I T RI+ D
Sbjct: 96 TQAVNGTNLIVNYLPQDMTDRELYALFRTCGPINTCRIMKD 136
>gi|195162221|ref|XP_002021954.1| GL14245 [Drosophila persimilis]
gi|194103852|gb|EDW25895.1| GL14245 [Drosophila persimilis]
Length = 618
Score = 90.5 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 44/86 (51%), Positives = 57/86 (66%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T S GYGFV+Y D E+AI+ LNGL ++NK +KVSYARP +SIK NLYV LP++
Sbjct: 157 TGYSFGYGFVDYRTEADTEEAIDKLNGLYVRNKRLKVSYARPGGQSIKDTNLYVINLPRN 216
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
+ L FSP+G+I+ IL D L
Sbjct: 217 IDDDMLTRTFSPFGQIVQRNILRDKL 242
>gi|391333252|ref|XP_003741033.1| PREDICTED: ELAV-like protein 2-like [Metaseiulus occidentalis]
Length = 409
Score = 90.1 bits (222), Expect = 3e-16, Method: Composition-based stats.
Identities = 42/85 (49%), Positives = 59/85 (69%), Gaps = 1/85 (1%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPS-SESIKGANLYVSGLPK 90
T S G+GFV+YH PEDA+KAI NG ++ NKT+KV+ A+PS S K N+Y+ G+PK
Sbjct: 53 TGYSYGFGFVDYHDPEDAKKAIGVYNGFKMNNKTLKVAIAKPSNSNHSKNTNVYIRGVPK 112
Query: 91 HMSQQELESLFSPYGRIITSRILCD 115
+ ELE+LF +GR++ R+L D
Sbjct: 113 NFDPDELENLFGTFGRLVQFRVLRD 137
>gi|13357170|gb|AAK20026.1|AF234184_1 sex-lethal protein SXL2 [Lucilia cuprina]
Length = 325
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/86 (50%), Positives = 57/86 (66%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T S GY FV++ DA+ AI +LNG+ ++NK +KVSYARP ESIK NLYV+ LP+
Sbjct: 139 TGYSFGYAFVDFASEIDAQNAIKSLNGVTVRNKRLKVSYARPGGESIKDTNLYVTNLPRT 198
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
++ ELE +F YG I+ IL D L
Sbjct: 199 ITDDELEKIFGKYGNIVQKNILRDKL 224
>gi|608545|gb|AAA96938.1| ribonucleoprotein, partial [Danio rerio]
Length = 245
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/57 (71%), Positives = 50/57 (87%)
Query: 59 LRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
LRLQ+KTIKVSYARPSS+SIK ANLY+SGLPK M+Q+++E +F YGRII SR+L D
Sbjct: 3 LRLQSKTIKVSYARPSSDSIKDANLYISGLPKTMTQKDVEEMFGRYGRIINSRVLVD 59
>gi|42768806|gb|AAS45603.1| sex-lethal [Bradysia coprophila]
Length = 289
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/87 (47%), Positives = 61/87 (70%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T S GYGFVNY E A++AI +LNG+ ++NK +KVSYARP+ E +K NLYV+ LP+
Sbjct: 112 TCYSFGYGFVNYLTEEGAQRAIKSLNGVTVRNKRLKVSYARPAGEELKETNLYVTNLPRT 171
Query: 92 MSQQELESLFSPYGRIITSRILCDNLA 118
+++++L+ +F YG I+ IL D +
Sbjct: 172 ITEEQLDEIFGKYGLIVQKNILRDKMT 198
>gi|13357168|gb|AAK20025.1|AF234183_1 sex-lethal protein SXL1 [Lucilia cuprina]
Length = 324
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/86 (50%), Positives = 57/86 (66%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T S GY FV++ DA+ AI +LNG+ ++NK +KVSYARP ESIK NLYV+ LP+
Sbjct: 139 TGYSFGYAFVDFASEIDAQNAIKSLNGVTVRNKRLKVSYARPGGESIKDTNLYVTNLPRT 198
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
++ ELE +F YG I+ IL D L
Sbjct: 199 ITDDELEKIFGKYGNIVQKNILRDKL 224
>gi|42768810|gb|AAS45605.1| sex-lethal [Trichomegalosphys pubescens]
Length = 292
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 41/87 (47%), Positives = 61/87 (70%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T S GYGFVNY E A++AI +LNG+ ++NK +KVS+ARP+ E IK NLYV+ LP+
Sbjct: 115 TCYSFGYGFVNYLTEEGAQRAIKSLNGVTVRNKRLKVSFARPAGEEIKETNLYVTNLPRT 174
Query: 92 MSQQELESLFSPYGRIITSRILCDNLA 118
+++++L+ +F YG I+ IL D +
Sbjct: 175 ITEEQLDEIFGKYGLIVQKNILRDKMT 201
>gi|42768808|gb|AAS45604.1| sex-lethal [Rhynchosciara americana]
Length = 293
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 41/87 (47%), Positives = 61/87 (70%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T S GYGFVNY E A++AI +LNG+ ++NK IKVS+ARP+ E +K NLYV+ LP+
Sbjct: 116 TCYSFGYGFVNYLTDEGAQRAIKSLNGVTVRNKRIKVSFARPAGEELKETNLYVTNLPRT 175
Query: 92 MSQQELESLFSPYGRIITSRILCDNLA 118
+++++L+ +F YG I+ IL D +
Sbjct: 176 ITEEQLDEIFGKYGLIVQKNILRDKMT 202
>gi|6226775|sp|O97018.2|SXL_CHRRU RecName: Full=Sex-lethal homolog
gi|25291016|gb|AAN74807.1| sex-lethal [Chrysomya rufifacies]
Length = 307
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/86 (50%), Positives = 57/86 (66%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T S GY FV++ DA+ AI +LNG+ ++NK +KVSYARP ESIK NLYV+ LP+
Sbjct: 122 TGYSFGYAFVDFASEIDAQNAIKSLNGVTVRNKRLKVSYARPGGESIKDTNLYVTNLPRT 181
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
++ ELE +F YG I+ IL D L
Sbjct: 182 ITDDELEKIFGKYGNIVQKNILRDKL 207
>gi|4930239|pdb|3SXL|A Chain A, Sex-Lethal Rna Recognition Domains 1 And 2 From Drosophila
Melanogaster
gi|4930240|pdb|3SXL|B Chain B, Sex-Lethal Rna Recognition Domains 1 And 2 From Drosophila
Melanogaster
gi|4930241|pdb|3SXL|C Chain C, Sex-Lethal Rna Recognition Domains 1 And 2 From Drosophila
Melanogaster
Length = 184
Score = 89.0 bits (219), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 40/87 (45%), Positives = 58/87 (66%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T S GY FV++ D+++AI LNG+ ++NK +KVSYARP ESIK NLYV+ LP+
Sbjct: 52 TGYSFGYAFVDFTSEXDSQRAIKVLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRT 111
Query: 92 MSQQELESLFSPYGRIITSRILCDNLA 118
++ +L+++F YG I+ IL D L
Sbjct: 112 ITDDQLDTIFGKYGSIVQKNILRDKLT 138
>gi|3255957|emb|CAA19655.1| EG:132E8.1 [Drosophila melanogaster]
Length = 485
Score = 89.0 bits (219), Expect = 6e-16, Method: Composition-based stats.
Identities = 43/86 (50%), Positives = 56/86 (65%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T S GYGFV+Y D+E AI LNG ++NK +KVSYARP +SIK NLYV L ++
Sbjct: 130 TGYSFGYGFVDYKTESDSEDAIQKLNGFYVRNKRLKVSYARPGGQSIKDTNLYVINLSRN 189
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
++ L+ +FSPYG I+ IL D L
Sbjct: 190 INDDMLDRIFSPYGLIVQRNILRDKL 215
>gi|225543108|ref|NP_001139415.1| sex lethal [Tribolium castaneum]
Length = 218
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 57/87 (65%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T S G+GFV Y EDA KAI +NG+ +NK +KVSY+RP +K +NLY++ LPK
Sbjct: 63 NTGYSFGFGFVKYFNEEDAAKAIQVINGMNYKNKRLKVSYSRPPGADMKASNLYITNLPK 122
Query: 91 HMSQQELESLFSPYGRIITSRILCDNL 117
+++ ++ LFS YG II +L D +
Sbjct: 123 DVTEDDVHRLFSNYGEIIQKSVLKDKI 149
>gi|195469719|ref|XP_002099784.1| GE16683 [Drosophila yakuba]
gi|194187308|gb|EDX00892.1| GE16683 [Drosophila yakuba]
Length = 563
Score = 89.0 bits (219), Expect = 6e-16, Method: Composition-based stats.
Identities = 43/86 (50%), Positives = 56/86 (65%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T S GYGFV+Y D+E AI LNG ++NK +KVSYARP +SIK NLYV L ++
Sbjct: 150 TGYSFGYGFVDYKTESDSEDAIQKLNGFYVRNKRLKVSYARPGGQSIKDTNLYVINLSRN 209
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
++ L+ +FSPYG I+ IL D L
Sbjct: 210 INDDMLDRIFSPYGLIVQRNILRDKL 235
>gi|52075416|emb|CAG29242.1| sex-lethal protein [Bactrocera oleae]
Length = 339
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 40/87 (45%), Positives = 59/87 (67%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T S GY FV++ D+++AI +LNG+ ++NK +KVSYARP ESIK NLYV+ LP+
Sbjct: 142 TGYSFGYAFVDFASETDSQRAIKSLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRT 201
Query: 92 MSQQELESLFSPYGRIITSRILCDNLA 118
++ +L+++F YG I+ IL D L
Sbjct: 202 ITDDQLDTIFGKYGMIVQKNILRDKLT 228
>gi|270009354|gb|EFA05802.1| hypothetical protein TcasGA2_TC030646 [Tribolium castaneum]
Length = 212
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 57/87 (65%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T S G+GFV Y EDA KAI +NG+ +NK +KVSY+RP +K +NLY++ LPK
Sbjct: 63 NTGYSFGFGFVKYFNEEDAAKAIQVINGMNYKNKRLKVSYSRPPGADMKASNLYITNLPK 122
Query: 91 HMSQQELESLFSPYGRIITSRILCDNL 117
+++ ++ LFS YG II +L D +
Sbjct: 123 DVTEDDVHRLFSNYGEIIQKSVLKDKI 149
>gi|2981305|gb|AAC38968.1| sex-lethal homolog CcSXL [Ceratitis capitata]
Length = 340
Score = 88.6 bits (218), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 59/86 (68%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T S GY FV++ D+++AI +LNG+ ++NK +KVSYARP ESIK NLYV+ LP+
Sbjct: 139 TGYSFGYAFVDFAAETDSQRAIKSLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRT 198
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
++ +L+++F YG I+ IL D L
Sbjct: 199 ITDDQLDTIFGKYGMIVQKNILRDKL 224
>gi|156388911|ref|XP_001634736.1| predicted protein [Nematostella vectensis]
gi|156221822|gb|EDO42673.1| predicted protein [Nematostella vectensis]
Length = 313
Score = 88.6 bits (218), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 56/84 (66%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
+ S G+GFV+Y+ EDA+KAI+ LNG + NK +KV+++RP ++ KGANLYV +PK
Sbjct: 42 SGWSYGFGFVDYNTTEDAQKAIDKLNGFTIGNKVLKVAFSRPGGDNTKGANLYVCNIPKQ 101
Query: 92 MSQQELESLFSPYGRIITSRILCD 115
+ + E F YG I+ R+L D
Sbjct: 102 LPEAEFRKAFEAYGNIVNCRLLRD 125
>gi|6226164|sp|O61374.2|SXL_CERCA RecName: Full=Sex-lethal homolog; AltName: Full=CCSXL
Length = 348
Score = 88.6 bits (218), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 59/86 (68%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T S GY FV++ D+++AI +LNG+ ++NK +KVSYARP ESIK NLYV+ LP+
Sbjct: 147 TGYSFGYAFVDFAAETDSQRAIKSLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRT 206
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
++ +L+++F YG I+ IL D L
Sbjct: 207 ITDDQLDTIFGKYGMIVQKNILRDKL 232
>gi|27752871|gb|AAO19468.1| sex-lethal [Sciara ocellaris]
Length = 287
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 61/86 (70%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T S GYGFVNY E A++AI +LNG+ ++NK +KVS+ARP+ E +K NLYV+ LP+
Sbjct: 110 TCYSFGYGFVNYLTEEGAQRAIKSLNGVTVRNKRLKVSFARPAGEELKETNLYVTNLPRT 169
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
+++++L+ +F YG I+ IL D +
Sbjct: 170 ITEEQLDEIFGKYGLIVQKNILRDKM 195
>gi|158285093|ref|XP_560351.3| AGAP003899-PA [Anopheles gambiae str. PEST]
gi|98986313|tpe|CAJ55784.1| TPA: sex-lethal [Anopheles gambiae]
gi|157020733|gb|EAL41988.3| AGAP003899-PA [Anopheles gambiae str. PEST]
Length = 302
Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 43/92 (46%), Positives = 61/92 (66%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGL 88
L T S G+GFVNY E A++AI LNG L+NK +KVSYARP S+ IK NLY++ L
Sbjct: 139 LKQTGYSYGFGFVNYLNEEAAQRAIKCLNGYPLRNKRLKVSYARPQSDDIKETNLYITNL 198
Query: 89 PKHMSQQELESLFSPYGRIITSRILCDNLATE 120
P+ +++++L+ +F YG I+ IL D L +
Sbjct: 199 PRTITEEQLDIIFGKYGTIVQKNILRDKLTGQ 230
Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 27/43 (62%)
Query: 73 PSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
P S G NL V+ LP+ M+++E+ S+FS G I + R++ D
Sbjct: 96 PGSSGTAGTNLIVNYLPQDMTEREMYSMFSAMGPIESCRLMRD 138
>gi|195564591|ref|XP_002105898.1| GD16553 [Drosophila simulans]
gi|194203263|gb|EDX16839.1| GD16553 [Drosophila simulans]
Length = 226
Score = 88.2 bits (217), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 43/87 (49%), Positives = 56/87 (64%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T S GYGFV+Y D+E AI LNG ++NK +KVSYARP +SIK NLYV L ++
Sbjct: 130 TGYSFGYGFVDYKTESDSEDAIQKLNGFYVRNKRLKVSYARPGGQSIKDTNLYVINLSRN 189
Query: 92 MSQQELESLFSPYGRIITSRILCDNLA 118
++ L+ +FSPYG I+ IL D L
Sbjct: 190 INDDMLDRIFSPYGLIVQRNILRDKLT 216
>gi|78706522|ref|NP_001027062.1| Sex lethal, isoform O [Drosophila melanogaster]
gi|71854531|gb|AAZ52509.1| Sex lethal, isoform O [Drosophila melanogaster]
Length = 364
Score = 88.2 bits (217), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 58/86 (67%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T S GY FV++ D+++AI LNG+ ++NK +KVSYARP ESIK NLYV+ LP+
Sbjct: 152 TGYSFGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRT 211
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
++ +L+++F YG I+ IL D L
Sbjct: 212 ITDDQLDTIFGKYGSIVQKNILRDKL 237
>gi|347970878|ref|XP_003436655.1| AGAP003899-PB [Anopheles gambiae str. PEST]
gi|333466414|gb|EGK96234.1| AGAP003899-PB [Anopheles gambiae str. PEST]
Length = 280
Score = 88.2 bits (217), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 43/92 (46%), Positives = 61/92 (66%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGL 88
L T S G+GFVNY E A++AI LNG L+NK +KVSYARP S+ IK NLY++ L
Sbjct: 117 LKQTGYSYGFGFVNYLNEEAAQRAIKCLNGYPLRNKRLKVSYARPQSDDIKETNLYITNL 176
Query: 89 PKHMSQQELESLFSPYGRIITSRILCDNLATE 120
P+ +++++L+ +F YG I+ IL D L +
Sbjct: 177 PRTITEEQLDIIFGKYGTIVQKNILRDKLTGQ 208
Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 27/43 (62%)
Query: 73 PSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
P S G NL V+ LP+ M+++E+ S+FS G I + R++ D
Sbjct: 74 PGSSGTAGTNLIVNYLPQDMTEREMYSMFSAMGPIESCRLMRD 116
>gi|195565544|ref|XP_002106359.1| Sex lethal [Drosophila simulans]
gi|194203735|gb|EDX17311.1| Sex lethal [Drosophila simulans]
Length = 301
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/87 (45%), Positives = 58/87 (66%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T S GY FV++ D+++AI LNG+ ++NK +KVSYARP ESIK NLYV+ LP+
Sbjct: 154 TGYSFGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRT 213
Query: 92 MSQQELESLFSPYGRIITSRILCDNLA 118
++ +L+++F YG I+ IL D L
Sbjct: 214 ITDDQLDTIFGKYGSIVQKNILRDKLT 240
>gi|4929888|pdb|1B7F|A Chain A, Sxl-Lethal ProteinRNA COMPLEX
gi|4929889|pdb|1B7F|B Chain B, Sxl-Lethal ProteinRNA COMPLEX
Length = 168
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 58/86 (67%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T S GY FV++ D+++AI LNG+ ++NK +KVSYARP ESIK NLYV+ LP+
Sbjct: 41 TGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRT 100
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
++ +L+++F YG I+ IL D L
Sbjct: 101 ITDDQLDTIFGKYGSIVQKNILRDKL 126
>gi|195048229|ref|XP_001992493.1| GH24172 [Drosophila grimshawi]
gi|193893334|gb|EDV92200.1| GH24172 [Drosophila grimshawi]
Length = 365
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 58/86 (67%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T S GY FV++ D+++AI LNG+ ++NK +KVSYARP ESIK NLYV+ LP+
Sbjct: 154 TGYSFGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRT 213
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
++ +L+++F YG I+ IL D L
Sbjct: 214 ITDDQLDTIFGKYGSIVQKNILRDKL 239
>gi|194896665|ref|XP_001978518.1| GG17637 [Drosophila erecta]
gi|195480535|ref|XP_002101294.1| GE17544 [Drosophila yakuba]
gi|190650167|gb|EDV47445.1| GG17637 [Drosophila erecta]
gi|194188818|gb|EDX02402.1| GE17544 [Drosophila yakuba]
Length = 335
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 58/86 (67%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T S GY FV++ D+++AI LNG+ ++NK +KVSYARP ESIK NLYV+ LP+
Sbjct: 122 TGYSFGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRT 181
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
++ +L+++F YG I+ IL D L
Sbjct: 182 ITDDQLDTIFGKYGSIVQKNILRDKL 207
>gi|221121216|ref|XP_002166224.1| PREDICTED: ELAV-like protein 4-like [Hydra magnipapillata]
Length = 346
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/82 (53%), Positives = 60/82 (73%), Gaps = 1/82 (1%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T S GYGFV+Y +PE A AI+ LNG ++QNK+IKV+Y++P S K ANLYV+GL KH
Sbjct: 51 TNYSFGYGFVDYLKPEFASLAISKLNGFQIQNKSIKVAYSKPPGCS-KNANLYVTGLGKH 109
Query: 92 MSQQELESLFSPYGRIITSRIL 113
+++ LE LF YG II +++L
Sbjct: 110 TNEKSLEELFGVYGEIIQTKLL 131
>gi|78706524|ref|NP_001027063.1| Sex lethal, isoform N [Drosophila melanogaster]
gi|78707532|ref|NP_524791.3| Sex lethal, isoform C [Drosophila melanogaster]
gi|22831873|gb|AAN09197.1| Sex lethal, isoform C [Drosophila melanogaster]
gi|71854532|gb|AAZ52510.1| Sex lethal, isoform N [Drosophila melanogaster]
gi|317453674|gb|ADV19045.1| RE22452p [Drosophila melanogaster]
Length = 344
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 58/86 (67%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T S GY FV++ D+++AI LNG+ ++NK +KVSYARP ESIK NLYV+ LP+
Sbjct: 152 TGYSFGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRT 211
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
++ +L+++F YG I+ IL D L
Sbjct: 212 ITDDQLDTIFGKYGSIVQKNILRDKL 237
>gi|281359983|ref|NP_001162688.1| Sex lethal, isoform R [Drosophila melanogaster]
gi|272506011|gb|ACZ95224.1| Sex lethal, isoform R [Drosophila melanogaster]
Length = 342
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 58/86 (67%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T S GY FV++ D+++AI LNG+ ++NK +KVSYARP ESIK NLYV+ LP+
Sbjct: 152 TGYSFGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRT 211
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
++ +L+++F YG I+ IL D L
Sbjct: 212 ITDDQLDTIFGKYGSIVQKNILRDKL 237
>gi|260166763|gb|ACX32993.1| RE12578p [Drosophila melanogaster]
Length = 360
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 58/86 (67%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T S GY FV++ D+++AI LNG+ ++NK +KVSYARP ESIK NLYV+ LP+
Sbjct: 168 TGYSFGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRT 227
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
++ +L+++F YG I+ IL D L
Sbjct: 228 ITDDQLDTIFGKYGSIVQKNILRDKL 253
>gi|195168643|ref|XP_002025140.1| GL26885 [Drosophila persimilis]
gi|198471287|ref|XP_002133706.1| GA22653 [Drosophila pseudoobscura pseudoobscura]
gi|194108585|gb|EDW30628.1| GL26885 [Drosophila persimilis]
gi|198145851|gb|EDY72333.1| GA22653 [Drosophila pseudoobscura pseudoobscura]
Length = 377
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 58/86 (67%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T S GY FV++ D+++AI LNG+ ++NK +KVSYARP ESIK NLYV+ LP+
Sbjct: 164 TGYSFGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRT 223
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
++ +L+++F YG I+ IL D L
Sbjct: 224 ITDDQLDTIFGKYGSIVQKNILRDKL 249
>gi|103381|pir||B39725 sex-lethal sex determination protein MS11 - fruit fly (Drosophila
melanogaster)
gi|158523|gb|AAA28921.1| putative [Drosophila melanogaster]
Length = 366
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 58/86 (67%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T S GY FV++ D+++AI LNG+ ++NK +KVSYARP ESIK NLYV+ LP+
Sbjct: 154 TGYSFGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRT 213
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
++ +L+++F YG I+ IL D L
Sbjct: 214 ITDDQLDTIFGKYGSIVQKNILRDKL 239
>gi|195132500|ref|XP_002010681.1| GI21573 [Drosophila mojavensis]
gi|193907469|gb|EDW06336.1| GI21573 [Drosophila mojavensis]
Length = 367
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 58/86 (67%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T S GY FV++ D+++AI LNG+ ++NK +KVSYARP ESIK NLYV+ LP+
Sbjct: 154 TGYSFGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRT 213
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
++ +L+++F YG I+ IL D L
Sbjct: 214 ITDDQLDTIFGKYGSIVQKNILRDKL 239
>gi|262360006|gb|ACY56908.1| RH48596p [Drosophila melanogaster]
Length = 339
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 58/86 (67%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T S GY FV++ D+++AI LNG+ ++NK +KVSYARP ESIK NLYV+ LP+
Sbjct: 147 TGYSFGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRT 206
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
++ +L+++F YG I+ IL D L
Sbjct: 207 ITDDQLDTIFGKYGSIVQKNILRDKL 232
>gi|78710141|ref|NP_727163.2| Sex lethal, isoform E [Drosophila melanogaster]
gi|78710163|ref|NP_727165.2| Sex lethal, isoform A [Drosophila melanogaster]
gi|45446831|gb|AAO41638.2| Sex lethal, isoform A [Drosophila melanogaster]
gi|71854536|gb|AAZ52512.1| Sex lethal, isoform E [Drosophila melanogaster]
Length = 314
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 58/86 (67%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T S GY FV++ D+++AI LNG+ ++NK +KVSYARP ESIK NLYV+ LP+
Sbjct: 122 TGYSFGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRT 181
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
++ +L+++F YG I+ IL D L
Sbjct: 182 ITDDQLDTIFGKYGSIVQKNILRDKL 207
>gi|78710143|ref|NP_727164.2| Sex lethal, isoform H [Drosophila melanogaster]
gi|22831872|gb|AAF46240.2| Sex lethal, isoform H [Drosophila melanogaster]
Length = 366
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 58/86 (67%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T S GY FV++ D+++AI LNG+ ++NK +KVSYARP ESIK NLYV+ LP+
Sbjct: 154 TGYSFGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRT 213
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
++ +L+++F YG I+ IL D L
Sbjct: 214 ITDDQLDTIFGKYGSIVQKNILRDKL 239
>gi|195456590|ref|XP_002075201.1| GK16696 [Drosophila willistoni]
gi|194171286|gb|EDW86187.1| GK16696 [Drosophila willistoni]
Length = 508
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/86 (48%), Positives = 59/86 (68%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T S GYGFV+Y+ D+E AI LNG ++NK +KVSYARP +SIK NLYV L ++
Sbjct: 149 TGYSFGYGFVDYNAEADSEDAIQKLNGFYVRNKRLKVSYARPGGQSIKDTNLYVINLSRN 208
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
++ + L+ +FSP+G+I+ IL D L
Sbjct: 209 INDEMLDRIFSPFGQIVQRNILRDKL 234
>gi|289803032|gb|ADD20766.1| RH41387p [Drosophila melanogaster]
Length = 322
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 58/86 (67%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T S GY FV++ D+++AI LNG+ ++NK +KVSYARP ESIK NLYV+ LP+
Sbjct: 130 TGYSFGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRT 189
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
++ +L+++F YG I+ IL D L
Sbjct: 190 ITDDQLDTIFGKYGSIVQKNILRDKL 215
>gi|281359985|ref|NP_001162689.1| Sex lethal, isoform AB [Drosophila melanogaster]
gi|272506012|gb|ACZ95225.1| Sex lethal, isoform AB [Drosophila melanogaster]
Length = 322
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 58/86 (67%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T S GY FV++ D+++AI LNG+ ++NK +KVSYARP ESIK NLYV+ LP+
Sbjct: 130 TGYSFGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRT 189
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
++ +L+++F YG I+ IL D L
Sbjct: 190 ITDDQLDTIFGKYGSIVQKNILRDKL 215
>gi|195399021|ref|XP_002058119.1| GJ15667 [Drosophila virilis]
gi|194150543|gb|EDW66227.1| GJ15667 [Drosophila virilis]
Length = 428
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/86 (50%), Positives = 58/86 (67%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T S GYGFV+Y+ D+E AI LNG ++NK +KVSYARP +SIK NLYV L ++
Sbjct: 54 TGYSFGYGFVDYNSEADSEDAILKLNGFYVRNKRLKVSYARPGGQSIKDTNLYVINLSRN 113
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
++ +L+ +FSPYG I+ IL D L
Sbjct: 114 INDDQLDRIFSPYGLIVQRNILRDKL 139
>gi|194763735|ref|XP_001963988.1| GF20968 [Drosophila ananassae]
gi|190618913|gb|EDV34437.1| GF20968 [Drosophila ananassae]
Length = 379
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 58/86 (67%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T S GY FV++ D+++AI LNG+ ++NK +KVSYARP ESIK NLYV+ LP+
Sbjct: 165 TGYSFGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRT 224
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
++ +L+++F YG I+ IL D L
Sbjct: 225 ITDDQLDTIFGKYGSIVQKNILRDKL 250
>gi|78710119|ref|NP_727160.2| Sex lethal, isoform J [Drosophila melanogaster]
gi|78710165|ref|NP_727166.2| Sex lethal, isoform G [Drosophila melanogaster]
gi|22831874|gb|AAN09198.1| Sex lethal, isoform J [Drosophila melanogaster]
gi|71854533|gb|AAN09200.2| Sex lethal, isoform G [Drosophila melanogaster]
Length = 346
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 58/86 (67%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T S GY FV++ D+++AI LNG+ ++NK +KVSYARP ESIK NLYV+ LP+
Sbjct: 154 TGYSFGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRT 213
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
++ +L+++F YG I+ IL D L
Sbjct: 214 ITDDQLDTIFGKYGSIVQKNILRDKL 239
>gi|195396313|ref|XP_002056776.1| Sex lethal [Drosophila virilis]
gi|194146543|gb|EDW62262.1| Sex lethal [Drosophila virilis]
Length = 368
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 58/86 (67%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T S GY FV++ D+++AI LNG+ ++NK +KVSYARP ESIK NLYV+ LP+
Sbjct: 155 TGYSFGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRT 214
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
++ +L+++F YG I+ IL D L
Sbjct: 215 ITDDQLDTIFGKYGSIVQKNILRDKL 240
>gi|45553910|ref|NP_996326.1| sister-of-Sex-lethal [Drosophila melanogaster]
gi|25012235|gb|AAN71232.1| LD21345p [Drosophila melanogaster]
gi|27819751|gb|AAO24926.1| SD07604p [Drosophila melanogaster]
gi|45446770|gb|AAS65244.1| sister-of-Sex-lethal [Drosophila melanogaster]
gi|220951726|gb|ACL88406.1| CG3056-PB [synthetic construct]
Length = 443
Score = 87.8 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 43/86 (50%), Positives = 56/86 (65%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T S GYGFV+Y D+E AI LNG ++NK +KVSYARP +SIK NLYV L ++
Sbjct: 130 TGYSFGYGFVDYKTESDSEDAIQKLNGFYVRNKRLKVSYARPGGQSIKDTNLYVINLSRN 189
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
++ L+ +FSPYG I+ IL D L
Sbjct: 190 INDDMLDRIFSPYGLIVQRNILRDKL 215
>gi|1403308|emb|CAA67016.1| sex-lethal [Drosophila subobscura]
Length = 346
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 58/86 (67%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T S GY FV++ D+++AI LNG+ ++NK +KVSYARP ESIK NLYV+ LP+
Sbjct: 156 TGYSFGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRT 215
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
++ +L+++F YG I+ IL D L
Sbjct: 216 ITDDQLDTIFGKYGSIVQKNILRDKL 241
>gi|195439114|ref|XP_002067476.1| GK16445 [Drosophila willistoni]
gi|194163561|gb|EDW78462.1| GK16445 [Drosophila willistoni]
Length = 373
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 58/86 (67%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T S GY FV++ D+++AI LNG+ ++NK +KVSYARP ESIK NLYV+ LP+
Sbjct: 158 TGYSFGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRT 217
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
++ +L+++F YG I+ IL D L
Sbjct: 218 ITDDQLDTIFGKYGSIVQKNILRDKL 243
Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 7/99 (7%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIK--VSYARPSSE 76
G++D +A SLG G + P + ++N L GL L + ++ RPS+
Sbjct: 62 GYNDFPGGGGNGGSANSLGGGNMCNMPPMASNNSLNNLCGLSLGSGGSDDLMNDHRPSN- 120
Query: 77 SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
NL V+ LP+ M+ +EL +LF G I T RI+ D
Sbjct: 121 ----TNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRD 155
>gi|12643503|sp|Q24668.2|SXL_DROSU RecName: Full=Protein sex-lethal
Length = 354
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 58/86 (67%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T S GY FV++ D+++AI LNG+ ++NK +KVSYARP ESIK NLYV+ LP+
Sbjct: 164 TGYSFGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRT 223
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
++ +L+++F YG I+ IL D L
Sbjct: 224 ITDDQLDTIFGKYGSIVQKNILRDKL 249
>gi|442615379|ref|NP_727161.3| Sex lethal, isoform W [Drosophila melanogaster]
gi|324096522|gb|ADY17790.1| RE26226p [Drosophila melanogaster]
gi|440216502|gb|AAF46241.4| Sex lethal, isoform W [Drosophila melanogaster]
Length = 344
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 58/86 (67%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T S GY FV++ D+++AI LNG+ ++NK +KVSYARP ESIK NLYV+ LP+
Sbjct: 154 TGYSFGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRT 213
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
++ +L+++F YG I+ IL D L
Sbjct: 214 ITDDQLDTIFGKYGSIVQKNILRDKL 239
>gi|281359979|ref|NP_001162686.1| Sex lethal, isoform P [Drosophila melanogaster]
gi|28317144|gb|AAO39587.1| LD15933p [Drosophila melanogaster]
gi|272506009|gb|ACZ95222.1| Sex lethal, isoform P [Drosophila melanogaster]
Length = 352
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 58/86 (67%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T S GY FV++ D+++AI LNG+ ++NK +KVSYARP ESIK NLYV+ LP+
Sbjct: 162 TGYSFGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRT 221
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
++ +L+++F YG I+ IL D L
Sbjct: 222 ITDDQLDTIFGKYGSIVQKNILRDKL 247
>gi|78706528|ref|NP_001027065.1| Sex lethal, isoform L [Drosophila melanogaster]
gi|78710139|ref|NP_727162.2| Sex lethal, isoform D [Drosophila melanogaster]
gi|281359987|ref|NP_001162690.1| Sex lethal, isoform T [Drosophila melanogaster]
gi|135080|sp|P19339.1|SXL_DROME RecName: Full=Protein sex-lethal
gi|158426|gb|AAA28884.1| sex-linked protein [Drosophila melanogaster]
gi|158525|gb|AAA28922.1| Sx1 [Drosophila melanogaster]
gi|10728509|gb|AAG22410.1| Sex lethal, isoform D [Drosophila melanogaster]
gi|71854534|gb|AAZ52511.1| Sex lethal, isoform L [Drosophila melanogaster]
gi|272506013|gb|ACZ95226.1| Sex lethal, isoform T [Drosophila melanogaster]
Length = 354
Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 58/86 (67%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T S GY FV++ D+++AI LNG+ ++NK +KVSYARP ESIK NLYV+ LP+
Sbjct: 162 TGYSFGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRT 221
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
++ +L+++F YG I+ IL D L
Sbjct: 222 ITDDQLDTIFGKYGSIVQKNILRDKL 247
>gi|323301216|gb|ADX35950.1| SD08075p [Drosophila melanogaster]
Length = 322
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 58/86 (67%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T S GY FV++ D+++AI LNG+ ++NK +KVSYARP ESIK NLYV+ LP+
Sbjct: 130 TGYSFGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRT 189
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
++ +L+++F YG I+ IL D L
Sbjct: 190 ITDDQLDTIFGKYGPIVQKNILRDKL 215
>gi|195353431|ref|XP_002043208.1| Sxl [Drosophila sechellia]
gi|194127306|gb|EDW49349.1| Sxl [Drosophila sechellia]
Length = 301
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 58/86 (67%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T S GY FV++ D+++AI LNG+ ++NK +KVSYARP ESIK NLYV+ LP+
Sbjct: 154 TGYSFGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRT 213
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
++ +L+++F YG I+ IL D L
Sbjct: 214 ITDDQLDTIFGKYGSIVQKNILRDKL 239
>gi|194763555|ref|XP_001963898.1| GF21012 [Drosophila ananassae]
gi|190618823|gb|EDV34347.1| GF21012 [Drosophila ananassae]
Length = 757
Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 42/86 (48%), Positives = 57/86 (66%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T S GYGFV+Y D+E AI LNG ++NK +KVSYARP +SIK NLYV LP++
Sbjct: 145 TGYSFGYGFVDYKSEADSEDAILKLNGFYVRNKRLKVSYARPGGQSIKDTNLYVINLPRN 204
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
++ L+ +FS +G+I+ IL D L
Sbjct: 205 INDAMLDRIFSAFGQIVQRNILRDKL 230
>gi|194912401|ref|XP_001982498.1| GG12847 [Drosophila erecta]
gi|190648174|gb|EDV45467.1| GG12847 [Drosophila erecta]
Length = 513
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/86 (50%), Positives = 56/86 (65%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T S GYGFV+Y D+E AI LNG ++NK +KVSYARP +SIK NLYV L ++
Sbjct: 138 TGYSFGYGFVDYKTESDSEDAIQKLNGFYVRNKRLKVSYARPGGQSIKDTNLYVINLSRN 197
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
++ L+ +FSPYG I+ IL D L
Sbjct: 198 INDDMLDRIFSPYGLIVQRNILRDKL 223
>gi|442615387|ref|NP_001259303.1| Sex lethal, isoform X [Drosophila melanogaster]
gi|440216503|gb|AGB95148.1| Sex lethal, isoform X [Drosophila melanogaster]
Length = 722
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 58/86 (67%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T S GY FV++ D+++AI LNG+ ++NK +KVSYARP ESIK NLYV+ LP+
Sbjct: 154 TGYSFGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRT 213
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
++ +L+++F YG I+ IL D L
Sbjct: 214 ITDDQLDTIFGKYGSIVQKNILRDKL 239
>gi|195041825|ref|XP_001991324.1| GH12116 [Drosophila grimshawi]
gi|193901082|gb|EDV99948.1| GH12116 [Drosophila grimshawi]
Length = 918
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/86 (48%), Positives = 59/86 (68%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T S GYGFV+Y+ D+E AI+ NGL ++NK +KVSYARP +SIK NLYV L ++
Sbjct: 220 TGYSFGYGFVDYNDETDSEAAIHKFNGLLVRNKRLKVSYARPGGQSIKDTNLYVINLSRN 279
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
++ +L+ +FSP+G I+ IL D L
Sbjct: 280 INDDQLDRIFSPFGLIVQRNILRDKL 305
>gi|195347606|ref|XP_002040343.1| GM19131 [Drosophila sechellia]
gi|194121771|gb|EDW43814.1| GM19131 [Drosophila sechellia]
Length = 488
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/87 (49%), Positives = 56/87 (64%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T S GYGFV+Y D+E AI LNG ++NK +KVSYARP +SIK NLYV L ++
Sbjct: 130 TGYSFGYGFVDYKTESDSEDAIQKLNGFYVRNKRLKVSYARPGGQSIKDTNLYVINLSRN 189
Query: 92 MSQQELESLFSPYGRIITSRILCDNLA 118
++ L+ +FSPYG I+ IL D L
Sbjct: 190 INDDMLDRIFSPYGLIVQRNILRDKLT 216
>gi|442615389|ref|NP_001259304.1| Sex lethal, isoform Y [Drosophila melanogaster]
gi|440216504|gb|AGB95149.1| Sex lethal, isoform Y [Drosophila melanogaster]
Length = 708
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 58/86 (67%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T S GY FV++ D+++AI LNG+ ++NK +KVSYARP ESIK NLYV+ LP+
Sbjct: 162 TGYSFGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRT 221
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
++ +L+++F YG I+ IL D L
Sbjct: 222 ITDDQLDTIFGKYGSIVQKNILRDKL 247
>gi|312375028|gb|EFR22477.1| hypothetical protein AND_15210 [Anopheles darlingi]
Length = 295
Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 60/92 (65%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGL 88
L T S G+GFVNY + A++AI LNG ++NK +KVSYARP S+ IK NLY++ L
Sbjct: 135 LKQTGYSYGFGFVNYLTEDAAQRAIKCLNGFPIRNKRLKVSYARPQSDDIKETNLYITNL 194
Query: 89 PKHMSQQELESLFSPYGRIITSRILCDNLATE 120
P+ +++ +L+ +F YG I+ IL D L +
Sbjct: 195 PRTINEDQLDIIFGKYGTIVQKNILRDKLTGQ 226
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 73 PSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
P S + G NL V+ LP+ M++QE+ S+FS G I + R++ D
Sbjct: 92 PGSPNHAGTNLIVNYLPQDMTEQEMYSIFSNMGPIESCRLMRD 134
>gi|157128475|ref|XP_001661445.1| RNA-binding protein precursor, putative [Aedes aegypti]
gi|108872557|gb|EAT36782.1| AAEL011150-PA [Aedes aegypti]
Length = 285
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 62/96 (64%), Gaps = 2/96 (2%)
Query: 24 EICVFL--ISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGA 81
E C + + T S G+GFVN+ + A++AI LNG ++NK +KVSYARP S+ IK
Sbjct: 115 ETCRIMRDVKTGYSYGFGFVNFLSEDAAQRAIRCLNGYSVRNKRLKVSYARPQSDDIKET 174
Query: 82 NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNL 117
NLY++ LP+ ++ ++L+ +F YG I+ IL D L
Sbjct: 175 NLYITNLPRTITDEQLDIIFGKYGTIVQKNILRDKL 210
>gi|405963075|gb|EKC28679.1| ELAV-like protein 2 [Crassostrea gigas]
Length = 502
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 60/90 (66%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T S G+GFV+Y EDAE+AI+ +NG ++ +KTIKVSYAR + KGAN+Y++ +P+
Sbjct: 227 ATNYSYGFGFVDYVNEEDAERAIHEMNGQKMDHKTIKVSYARKNDSESKGANIYIANIPR 286
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATE 120
++EL + F +G II R+L D E
Sbjct: 287 SFGEEELGAHFRQFGEIIQVRLLRDKSTNE 316
>gi|387196968|gb|AFJ68786.1| elav-like protein 2, partial [Nannochloropsis gaditana CCMP526]
Length = 358
Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 57/84 (67%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
+ +SLGYGFV Y P+ A+ AI T NG ++ K IKVS ARP+SE K LYV+ LP H
Sbjct: 153 SGRSLGYGFVKYKDPQSADSAILTRNGHQVYGKRIKVSVARPASEEHKHTKLYVANLPHH 212
Query: 92 MSQQELESLFSPYGRIITSRILCD 115
++ E+ LF+P+GRII R+L +
Sbjct: 213 FTKAEVIQLFAPHGRIIECRLLME 236
>gi|6456838|emb|CAA04179.2| Sex-lethal orthologous protein [Megaselia scalaris]
Length = 307
Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 58/84 (69%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T S GYGFV++ DA +AIN LNG+ ++NK IKVS+ARP E ++ NLYV+ L +
Sbjct: 101 TGYSYGYGFVDFGSEADALRAINNLNGITVRNKRIKVSFARPGGEQLRDTNLYVTNLSRS 160
Query: 92 MSQQELESLFSPYGRIITSRILCD 115
++ ++LE++F YG+I+ IL D
Sbjct: 161 ITDEQLETIFGKYGQIVQKNILRD 184
>gi|30179878|sp|O01671.3|SXL_MEGSC RecName: Full=Sex-lethal homolog
gi|9743624|emb|CAC01696.1| sex-lethal homologue [Megaselia scalaris]
Length = 321
Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 58/84 (69%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T S GYGFV++ DA +AIN LNG+ ++NK IKVS+ARP E ++ NLYV+ L +
Sbjct: 115 TGYSYGYGFVDFGSEADALRAINNLNGITVRNKRIKVSFARPGGEQLRDTNLYVTNLSRS 174
Query: 92 MSQQELESLFSPYGRIITSRILCD 115
++ ++LE++F YG+I+ IL D
Sbjct: 175 ITDEQLETIFGKYGQIVQKNILRD 198
>gi|444726522|gb|ELW67052.1| ELAV-like protein 4 [Tupaia chinensis]
Length = 423
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/91 (52%), Positives = 57/91 (62%), Gaps = 2/91 (2%)
Query: 28 FLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSG 87
F+I Q+L R E I++ K +KVSYARPSS SI+ ANLYVSG
Sbjct: 138 FVIQREQTLWEQIGATQRMGHKENLIDSF--YVFSKKEMKVSYARPSSASIRDANLYVSG 195
Query: 88 LPKHMSQQELESLFSPYGRIITSRILCDNLA 118
LPK M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 196 LPKTMTQKELEQLFSQYGRIITSRILVDQVT 226
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 44/75 (58%), Gaps = 6/75 (8%)
Query: 37 GYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSES------IKGANLYVSGLPK 90
GYGFVNY P+DAEKAINTLNGLRLQ KTIK+ P + A+++ + +
Sbjct: 77 GYGFVNYIDPKDAEKAINTLNGLRLQTKTIKLEATGPCRCDDKVTYLVSQADVHSARFQQ 136
Query: 91 HMSQQELESLFSPYG 105
H Q ++L+ G
Sbjct: 137 HFVIQREQTLWEQIG 151
Score = 35.8 bits (81), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%)
Query: 54 NTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRIL 113
NT NG N+ ++ NL V+ LP++M+Q+E SLF G I + +++
Sbjct: 12 NTSNGPSTNNRNCPSPMQTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLV 71
Query: 114 CDNLA 118
D +
Sbjct: 72 RDKIT 76
>gi|253722793|pdb|1D8Z|A Chain A, Solution Structure Of The First Rna-Binding Domain
(Rbd1) Of Hu Antigen C (Huc)
Length = 89
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/60 (70%), Positives = 46/60 (76%), Gaps = 2/60 (3%)
Query: 22 DAEICVFLIS--TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIK 79
D E C + T QSLGYGFVNY P DA+KAINTLNGL+LQ KTIKVSYARPSS SI+
Sbjct: 30 DIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIR 89
>gi|313230477|emb|CBY18692.1| unnamed protein product [Oikopleura dioica]
Length = 227
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/98 (43%), Positives = 64/98 (65%), Gaps = 4/98 (4%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T S GYGF++ +DAE+AI LN ++ +K +KV+Y+ PS + + NLY+ GLPKH
Sbjct: 108 TGYSFGYGFIDMASADDAERAIRKLNQYQIGHKRLKVAYSLPSGDRTRNINLYIKGLPKH 167
Query: 92 MSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLG 129
+++ELE F+ +G I +RIL D AT+ G SG+G
Sbjct: 168 WTRRELEDHFTRFGAIRNARILFD-PATQTG---SGVG 201
>gi|345326434|ref|XP_001510704.2| PREDICTED: hypothetical protein LOC100079778 [Ornithorhynchus
anatinus]
Length = 620
Score = 83.2 bits (204), Expect = 3e-14, Method: Composition-based stats.
Identities = 39/51 (76%), Positives = 44/51 (86%)
Query: 67 KVSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNL 117
+VSYARPSS SI+ ANLYVSGLPK MSQ+E+E LFS YGRIITSRIL D +
Sbjct: 306 QVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQV 356
>gi|313246014|emb|CBY34981.1| unnamed protein product [Oikopleura dioica]
Length = 225
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 42/98 (42%), Positives = 64/98 (65%), Gaps = 4/98 (4%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T S GYGF++ +DAE+AI LN ++ +K +KV+Y+ PS + + NLY+ GLPKH
Sbjct: 108 TGYSFGYGFIDMASADDAERAIRKLNQYQIGHKRLKVAYSLPSGDRTRNINLYIKGLPKH 167
Query: 92 MSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLG 129
+++ELE F+ +G I +RIL D AT+ G +G+G
Sbjct: 168 WTRRELEDHFTRFGAIRNARILFD-PATQTG---TGVG 201
>gi|395750501|ref|XP_002828742.2| PREDICTED: ELAV-like protein 3 [Pongo abelii]
Length = 275
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 39/51 (76%), Positives = 44/51 (86%)
Query: 67 KVSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNL 117
+VSYARPSS SI+ ANLYVSGLPK MSQ+E+E LFS YGRIITSRIL D +
Sbjct: 23 RVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQV 73
>gi|348550983|ref|XP_003461310.1| PREDICTED: ELAV-like protein 3-like [Cavia porcellus]
Length = 379
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/50 (78%), Positives = 43/50 (86%)
Query: 68 VSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNL 117
VSYARPSS SI+ ANLYVSGLPK MSQ+E+E LFS YGRIITSRIL D +
Sbjct: 131 VSYARPSSASIRDANLYVSGLPKSMSQKEMEQLFSQYGRIITSRILVDQV 180
>gi|432104153|gb|ELK30980.1| ELAV-like protein 4 [Myotis davidii]
Length = 268
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/50 (78%), Positives = 43/50 (86%)
Query: 68 VSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNL 117
VSYARPSS SI+ ANLYVSGLPK M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 21 VSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQV 70
>gi|358421488|ref|XP_003584982.1| PREDICTED: eLAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)-like, partial [Bos
taurus]
Length = 224
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/50 (78%), Positives = 43/50 (86%)
Query: 68 VSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNL 117
VSYARPSS SI+ ANLYVSGLPK M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 1 VSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQV 50
>gi|295871070|gb|ADG49460.1| CG4396 [Drosophila simulans]
gi|295871072|gb|ADG49461.1| CG4396 [Drosophila simulans]
gi|295871074|gb|ADG49462.1| CG4396 [Drosophila simulans]
gi|295871076|gb|ADG49463.1| CG4396 [Drosophila simulans]
gi|295871078|gb|ADG49464.1| CG4396 [Drosophila simulans]
gi|295871080|gb|ADG49465.1| CG4396 [Drosophila simulans]
gi|295871082|gb|ADG49466.1| CG4396 [Drosophila simulans]
gi|295871084|gb|ADG49467.1| CG4396 [Drosophila simulans]
gi|295871086|gb|ADG49468.1| CG4396 [Drosophila simulans]
gi|295871088|gb|ADG49469.1| CG4396 [Drosophila simulans]
gi|295871090|gb|ADG49470.1| CG4396 [Drosophila simulans]
gi|295871092|gb|ADG49471.1| CG4396 [Drosophila simulans]
gi|295871094|gb|ADG49472.1| CG4396 [Drosophila simulans]
gi|295871096|gb|ADG49473.1| CG4396 [Drosophila simulans]
gi|295871098|gb|ADG49474.1| CG4396 [Drosophila simulans]
gi|295871100|gb|ADG49475.1| CG4396 [Drosophila simulans]
gi|295871102|gb|ADG49476.1| CG4396 [Drosophila simulans]
gi|295871104|gb|ADG49477.1| CG4396 [Drosophila simulans]
gi|295871106|gb|ADG49478.1| CG4396 [Drosophila simulans]
gi|295871108|gb|ADG49479.1| CG4396 [Drosophila simulans]
gi|295871110|gb|ADG49480.1| CG4396 [Drosophila simulans]
gi|295871112|gb|ADG49481.1| CG4396 [Drosophila simulans]
gi|295871114|gb|ADG49482.1| CG4396 [Drosophila simulans]
gi|295871116|gb|ADG49483.1| CG4396 [Drosophila simulans]
gi|295871118|gb|ADG49484.1| CG4396 [Drosophila melanogaster]
gi|295871120|gb|ADG49485.1| CG4396 [Drosophila melanogaster]
gi|295871122|gb|ADG49486.1| CG4396 [Drosophila melanogaster]
gi|295871124|gb|ADG49487.1| CG4396 [Drosophila melanogaster]
gi|295871126|gb|ADG49488.1| CG4396 [Drosophila melanogaster]
gi|295871128|gb|ADG49489.1| CG4396 [Drosophila melanogaster]
gi|295871130|gb|ADG49490.1| CG4396 [Drosophila melanogaster]
gi|295871132|gb|ADG49491.1| CG4396 [Drosophila melanogaster]
gi|295871134|gb|ADG49492.1| CG4396 [Drosophila melanogaster]
gi|295871136|gb|ADG49493.1| CG4396 [Drosophila melanogaster]
gi|295871138|gb|ADG49494.1| CG4396 [Drosophila melanogaster]
gi|295871140|gb|ADG49495.1| CG4396 [Drosophila melanogaster]
gi|295871142|gb|ADG49496.1| CG4396 [Drosophila melanogaster]
gi|295871144|gb|ADG49497.1| CG4396 [Drosophila melanogaster]
gi|295871146|gb|ADG49498.1| CG4396 [Drosophila melanogaster]
gi|295871148|gb|ADG49499.1| CG4396 [Drosophila melanogaster]
gi|295871150|gb|ADG49500.1| CG4396 [Drosophila melanogaster]
gi|295871152|gb|ADG49501.1| CG4396 [Drosophila melanogaster]
gi|295871154|gb|ADG49502.1| CG4396 [Drosophila melanogaster]
gi|295871156|gb|ADG49503.1| CG4396 [Drosophila melanogaster]
gi|295871158|gb|ADG49504.1| CG4396 [Drosophila melanogaster]
gi|295871160|gb|ADG49505.1| CG4396 [Drosophila melanogaster]
gi|295871162|gb|ADG49506.1| CG4396 [Drosophila melanogaster]
Length = 123
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/47 (74%), Positives = 44/47 (93%)
Query: 72 RPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLA 118
RPSSESIKGANLYVSGLPK++SQ +LE +F+ +G+IITSRILCDN++
Sbjct: 1 RPSSESIKGANLYVSGLPKNLSQPDLEGMFASFGKIITSRILCDNIS 47
>gi|345308310|ref|XP_003428682.1| PREDICTED: ELAV-like protein 2-like [Ornithorhynchus anatinus]
Length = 595
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/50 (78%), Positives = 43/50 (86%)
Query: 68 VSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNL 117
VSYARPSS SI+ ANLYVSGLPK M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 347 VSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQV 396
Score = 38.9 bits (89), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 54 NTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRIL 113
NT NG N ++E K NL V+ LP++M+Q+EL+SLF G I + +++
Sbjct: 13 NTANGPSTINNNCSSPVDSGNTEDSK-TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLV 71
Query: 114 CDNLATENGKYYSGL 128
D + E K S +
Sbjct: 72 RDKITDEPSKDISSV 86
>gi|357626334|gb|EHJ76460.1| hypothetical protein KGM_20562 [Danaus plexippus]
Length = 966
Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 52/82 (63%), Gaps = 6/82 (7%)
Query: 37 GYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYA------RPSSESIKGANLYVSGLPK 90
GYGFV Y PEDA KA NGL +QNKT+KVS+A +P ++ NLYV LP
Sbjct: 59 GYGFVEYCHPEDAVKARKAFNGLLMQNKTLKVSHALLNPELKPPTKPEADWNLYVCNLPN 118
Query: 91 HMSQQELESLFSPYGRIITSRI 112
++ Q+L LF+ +G+I+ SRI
Sbjct: 119 ELTLQDLHGLFAQFGKIVNSRI 140
>gi|119732355|gb|ABL98209.1| ELAV-like protein [Bombyx mori]
Length = 268
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 52/82 (63%), Gaps = 6/82 (7%)
Query: 37 GYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYA------RPSSESIKGANLYVSGLPK 90
GYGFV Y RP+DA KA NGL +QNKT+KVS+A +P ++ NLY+ LP
Sbjct: 26 GYGFVEYTRPDDAVKARKAFNGLLMQNKTLKVSHALLNPELKPPTKPEADWNLYICNLPN 85
Query: 91 HMSQQELESLFSPYGRIITSRI 112
++ Q L LF+ +GRII SRI
Sbjct: 86 ELTLQGLHGLFAQFGRIINSRI 107
>gi|194744937|ref|XP_001954949.1| GF18529 [Drosophila ananassae]
gi|190627986|gb|EDV43510.1| GF18529 [Drosophila ananassae]
Length = 417
Score = 79.0 bits (193), Expect = 5e-13, Method: Composition-based stats.
Identities = 39/86 (45%), Positives = 56/86 (65%)
Query: 30 ISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLP 89
+ST S GYGFV++ A+ A L+G +L+ K +KVSYARP SE IK +NLYVS LP
Sbjct: 177 LSTGFSFGYGFVDFMDSRQAQVAQIILDGRQLRGKRLKVSYARPRSEDIKNSNLYVSHLP 236
Query: 90 KHMSQQELESLFSPYGRIITSRILCD 115
++ ++ LF P+G+I+ IL +
Sbjct: 237 ATTNESQIRELFGPHGQILDINILIN 262
>gi|195546808|ref|NP_001091837.2| Elav protein [Bombyx mori]
gi|195542256|gb|ABM21482.2| ELAV [Bombyx mori]
Length = 301
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 52/82 (63%), Gaps = 6/82 (7%)
Query: 37 GYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYA------RPSSESIKGANLYVSGLPK 90
GYGFV Y RP+DA KA NGL +QNKT+KVS+A +P ++ NLY+ LP
Sbjct: 59 GYGFVEYTRPDDAVKARKAFNGLLMQNKTLKVSHALLNPELKPPTKPEADWNLYICNLPN 118
Query: 91 HMSQQELESLFSPYGRIITSRI 112
++ Q L LF+ +GRII SRI
Sbjct: 119 ELTLQGLHGLFAQFGRIINSRI 140
>gi|47210814|emb|CAF92867.1| unnamed protein product [Tetraodon nigroviridis]
Length = 447
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/51 (68%), Positives = 43/51 (84%)
Query: 65 TIKVSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+++VSYARPSSE IK ANLY+SGLP+ SQQ+LE +FS YGRII SR+L D
Sbjct: 208 SLQVSYARPSSEMIKDANLYISGLPRTASQQDLEDMFSHYGRIINSRVLVD 258
Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 27/37 (72%)
Query: 82 NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLA 118
NL V+ LP+ MSQ+EL SLFS G + +++++ D +A
Sbjct: 56 NLIVNYLPQSMSQEELRSLFSSVGDVESAKLIRDKVA 92
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 28/41 (68%)
Query: 30 ISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY 70
+T++ G+GFV E+A AI++LNG RL +K ++VS+
Sbjct: 400 FNTSKCKGFGFVTMSNYEEAAMAIHSLNGYRLGDKVLQVSF 440
>gi|328876996|gb|EGG25359.1| hypothetical protein DFA_03608 [Dictyostelium fasciculatum]
Length = 1145
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 54/81 (66%)
Query: 35 SLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQ 94
++GYGFV + E A AI ++NG +KTIKVSYA P+S+ ANLY++ L H+++
Sbjct: 755 NMGYGFVKFVHSESAAAAIESMNGHMTDSKTIKVSYATPTSQQSTHANLYINRLEPHVTK 814
Query: 95 QELESLFSPYGRIITSRILCD 115
++L FS +G ++ +RIL D
Sbjct: 815 EDLAEAFSKFGELVETRILMD 835
>gi|253771010|gb|ACT35655.1| elav-like protein 2 [Macrostomum lignano]
Length = 422
Score = 74.7 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 32/82 (39%), Positives = 53/82 (64%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
+ S G+GF ++ EDA +A+ LNGL+L KTIKV++AR S K NL+++ LP
Sbjct: 44 SGYSFGFGFCEFYTAEDASRAVRMLNGLQLHRKTIKVAHARLQSSESKNCNLHITNLPPT 103
Query: 92 MSQQELESLFSPYGRIITSRIL 113
++ +++ ++ P+G II +IL
Sbjct: 104 VTAEDIRAVLEPHGGIINCKIL 125
>gi|312370698|gb|EFR19033.1| hypothetical protein AND_23174 [Anopheles darlingi]
Length = 468
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/42 (73%), Positives = 38/42 (90%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNL 117
+ + GANLYVSGLPK+M Q +LE+LFSP+GRIITSRILCDN+
Sbjct: 247 DKVTGANLYVSGLPKNMLQADLEALFSPFGRIITSRILCDNI 288
>gi|407943922|pdb|4FXV|A Chain A, Crystal Structure Of An Elav-Like Protein 1 (Elavl1)
From Homo Sapiens At 1.90 A Resolution
gi|407943923|pdb|4FXV|B Chain B, Crystal Structure Of An Elav-Like Protein 1 (Elavl1)
From Homo Sapiens At 1.90 A Resolution
gi|407943924|pdb|4FXV|C Chain C, Crystal Structure Of An Elav-Like Protein 1 (Elavl1)
From Homo Sapiens At 1.90 A Resolution
gi|407943925|pdb|4FXV|D Chain D, Crystal Structure Of An Elav-Like Protein 1 (Elavl1)
From Homo Sapiens At 1.90 A Resolution
Length = 99
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 34/42 (80%), Positives = 37/42 (88%)
Query: 33 AQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPS 74
SLGYGFVNY +DAE+AINTLNGLRLQ+KTIKVSYARPS
Sbjct: 58 GHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPS 99
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 28/40 (70%)
Query: 79 KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLA 118
+G NL V+ LP++ +Q EL SLFS G + +++++ D +A
Sbjct: 18 QGTNLIVNYLPQNXTQDELRSLFSSIGEVESAKLIRDKVA 57
>gi|6469495|emb|CAB61831.1| Sex-lethal orthologous protein [Megaselia scalaris]
Length = 121
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 48/68 (70%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T S GYGFV++ DA +AIN LNG+ ++NK IKVS+ARP E ++ NLYV+ L +
Sbjct: 54 TGYSYGYGFVDFGSEADALRAINNLNGITVRNKRIKVSFARPGGEQLRDTNLYVTNLSRS 113
Query: 92 MSQQELES 99
++ ++LE+
Sbjct: 114 ITDEQLET 121
>gi|292659621|pdb|3HI9|A Chain A, The X-Ray Crystal Structure Of The First Rna Recognition
Motif (Rrm1) Of The Au-Rich Element (Are) Binding
Protein Hur At 2.0 Angstrom Resolution
gi|292659622|pdb|3HI9|B Chain B, The X-Ray Crystal Structure Of The First Rna Recognition
Motif (Rrm1) Of The Au-Rich Element (Are) Binding
Protein Hur At 2.0 Angstrom Resolution
gi|292659623|pdb|3HI9|C Chain C, The X-Ray Crystal Structure Of The First Rna Recognition
Motif (Rrm1) Of The Au-Rich Element (Are) Binding
Protein Hur At 2.0 Angstrom Resolution
gi|292659624|pdb|3HI9|D Chain D, The X-Ray Crystal Structure Of The First Rna Recognition
Motif (Rrm1) Of The Au-Rich Element (Are) Binding
Protein Hur At 2.0 Angstrom Resolution
Length = 84
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 34/42 (80%), Positives = 37/42 (88%)
Query: 33 AQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPS 74
SLGYGFVNY +DAE+AINTLNGLRLQ+KTIKVSYARPS
Sbjct: 43 GHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPS 84
Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 27/37 (72%)
Query: 82 NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLA 118
NL V+ LP++M+Q EL SLFS G + +++++ D +A
Sbjct: 6 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVA 42
>gi|357437769|ref|XP_003589160.1| Polyadenylate-binding protein [Medicago truncatula]
gi|355478208|gb|AES59411.1| Polyadenylate-binding protein [Medicago truncatula]
Length = 647
Score = 71.6 bits (174), Expect = 9e-11, Method: Composition-based stats.
Identities = 34/95 (35%), Positives = 57/95 (60%), Gaps = 2/95 (2%)
Query: 30 ISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSG 87
++T +SLGYG+VN+ P+DA +A++ LN + NK+I+V Y+ PSS AN+++
Sbjct: 67 LATRRSLGYGYVNFTNPQDAARALDVLNFTPMNNKSIRVMYSHRDPSSRKSGTANIFIKN 126
Query: 88 LPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
L K + + L FS +G+I++ +I D G
Sbjct: 127 LDKTIDHKALHDTFSSFGQIMSCKIATDGSGQSKG 161
Score = 53.1 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 33/125 (26%), Positives = 55/125 (44%), Gaps = 19/125 (15%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE-------------- 76
+ +S +GFVN+ EDA KA+ LNG ++ +K V A+ SE
Sbjct: 246 ADGRSKCFGFVNFENAEDAAKAVEALNGKKVDDKEWYVGKAQKKSEREQELKGRFEQTVK 305
Query: 77 -----SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGR 131
+G NLY+ L ++ ++L+ +FS +G I + +I+ D G +
Sbjct: 306 ESVVDKFQGLNLYLKNLDDSITDEKLKEMFSEFGTITSYKIMRDPNGVSRGSGFVAFSTP 365
Query: 132 ERLRR 136
E R
Sbjct: 366 EEASR 370
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 61/119 (51%), Gaps = 10/119 (8%)
Query: 7 LNKLFTYEKVHLGFSD-AEICVFLIST---AQSLGYGFVNYHRPEDAEKAINTLNGLRLQ 62
L+K ++ +H FS +I I+T QS GYGFV + + A+ AI+ LNG+ +
Sbjct: 127 LDKTIDHKALHDTFSSFGQIMSCKIATDGSGQSKGYGFVQFEAEDSAQNAIDKLNGMLIN 186
Query: 63 NKTIKVSYARPSSE------SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+K + V + + K N+YV L + ++ +L++ F YG I ++ ++ D
Sbjct: 187 DKQVFVGHFLRKQDRDNVLSKTKFNNVYVKNLSESFTEDDLKNEFGAYGTITSAVLMRD 245
>gi|13560783|gb|AAK30205.1|AF349964_1 poly(A)-binding protein [Daucus carota]
Length = 658
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 37/95 (38%), Positives = 54/95 (56%), Gaps = 2/95 (2%)
Query: 30 ISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSG 87
+ST +SLGYG+VNY +DA +AI+ LN L NKTI+VS +R P+ N+++
Sbjct: 75 LSTGRSLGYGYVNYSNQQDATRAIDVLNFTPLNNKTIRVSVSRRDPTDRKSGAGNIFIKN 134
Query: 88 LPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
L K + + L FS +G II+ +I D G
Sbjct: 135 LDKSIDIKALHETFSSFGTIISCKIATDASGQSKG 169
Score = 59.7 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 37/130 (28%), Positives = 57/130 (43%), Gaps = 18/130 (13%)
Query: 25 ICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE-------- 76
+ V + +S +GFVN+ PEDA KA++ LNG + +K V A+ SE
Sbjct: 248 VVVMRDADGKSKCFGFVNFENPEDAAKAVDALNGKKFDDKEWYVGKAQKKSEREVELKSR 307
Query: 77 ----------SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYS 126
+G NLYV L + ++L+ LFS YG I + +++ D G +
Sbjct: 308 FEQTVKEQVDKYQGVNLYVKNLDDTIDDEKLKELFSEYGTITSCKVMRDPSGISRGSGFV 367
Query: 127 GLGGRERLRR 136
E R
Sbjct: 368 AFSTPEEASR 377
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 6/91 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY-----ARPSSES-IKGANLY 84
++ QS GYGFV Y E A+ AI+ LNG+ + +K + V R S S K N+Y
Sbjct: 163 ASGQSKGYGFVQYDSEEAAQTAIDKLNGMLMNDKQVYVGVFLRKQDRDSEMSKTKFNNIY 222
Query: 85 VSGLPKHMSQQELESLFSPYGRIITSRILCD 115
V L S+ +L F YG I + ++ D
Sbjct: 223 VKNLSDSTSEDDLRKTFGEYGTITSVVVMRD 253
>gi|170055898|ref|XP_001863788.1| RNA-binding protein [Culex quinquefasciatus]
gi|167875756|gb|EDS39139.1| RNA-binding protein [Culex quinquefasciatus]
Length = 263
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 54/84 (64%), Gaps = 6/84 (7%)
Query: 40 FVNYHRPED-----AEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQ 94
VNY P+D A++AI LNG ++NK +KVSYARP S+ IK NLY++ LP+ ++
Sbjct: 107 IVNYI-PQDMSEQAAQRAIRCLNGYTVRNKRLKVSYARPQSDDIKETNLYITNLPRTITD 165
Query: 95 QELESLFSPYGRIITSRILCDNLA 118
++L+ +F YG I+ IL D L
Sbjct: 166 EQLDIIFGKYGTIVQKNILRDKLT 189
>gi|330798463|ref|XP_003287272.1| hypothetical protein DICPUDRAFT_151346 [Dictyostelium purpureum]
gi|325082732|gb|EGC36205.1| hypothetical protein DICPUDRAFT_151346 [Dictyostelium purpureum]
Length = 518
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 51/79 (64%)
Query: 37 GYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQQE 96
GYGFV + + EDA A+ +NG + ++ IKVSYA+ SS ANLYV+ L H++
Sbjct: 177 GYGFVKFTKREDAFIAVEQMNGFEIDSRPIKVSYAQASSLQSNHANLYVNRLEPHVTNAN 236
Query: 97 LESLFSPYGRIITSRILCD 115
L+ +FS +G +I ++IL D
Sbjct: 237 LKEIFSNFGEVIDTKILID 255
>gi|6469493|emb|CAB61832.1| Sex-lethal orthologous protein [Megaselia scalaris]
Length = 167
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 47/67 (70%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T S GYGFV++ DA +AIN LNG+ ++NK IKVS+ARP E ++ NLYV+ L +
Sbjct: 101 TGYSYGYGFVDFGSEADALRAINNLNGITVRNKRIKVSFARPGGEQLRDTNLYVTNLSRS 160
Query: 92 MSQQELE 98
++ ++LE
Sbjct: 161 ITDEQLE 167
>gi|281212020|gb|EFA86181.1| hypothetical protein PPL_00743 [Polysphondylium pallidum PN500]
Length = 602
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 65/112 (58%), Gaps = 5/112 (4%)
Query: 9 KLFTYEKVHLGFSD-AEICVFLIST----AQSLGYGFVNYHRPEDAEKAINTLNGLRLQN 63
K F+ E + F++ EI + + T ++++GYGFV Y PE A AI +NG +
Sbjct: 162 KHFSSEDLRDMFANFGEIVSYKVVTKRGNSKNMGYGFVKYATPEGATAAIEQMNGHSIDL 221
Query: 64 KTIKVSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
K +KVSYA +S ANLYV+ L +++++L FS +G ++ ++IL D
Sbjct: 222 KFLKVSYATATSSQSTHANLYVNRLEPQVTKEDLAEAFSKFGEVVETKILVD 273
>gi|357626291|gb|EHJ76427.1| putative ELAV-like protein 1 [Danaus plexippus]
Length = 370
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 50/86 (58%), Gaps = 14/86 (16%)
Query: 37 GYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYA----------RPSSESIKGANLYVS 86
GYGFV Y + EDAEKA NGL +Q KT+KVS+A +P +ES NLY+S
Sbjct: 51 GYGFVEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTES----NLYIS 106
Query: 87 GLPKHMSQQELESLFSPYGRIITSRI 112
LP M+ + L LF +G I SR+
Sbjct: 107 NLPPDMTLERLNMLFGQFGNITNSRV 132
>gi|148226306|ref|NP_001080407.1| RNA binding motif, single stranded interacting protein 1 [Xenopus
laevis]
gi|27695126|gb|AAH43623.1| Rbms1-prov protein [Xenopus laevis]
Length = 374
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 59/103 (57%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA++ L +Q + K P+ NLY+S LP
Sbjct: 66 TTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPT-------NLYISNLPL 118
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELES+ P+G++I++RIL D+ T G ++ + E+
Sbjct: 119 SMDEQELESMLKPFGQVISTRILRDSSGTSRGVGFARMESTEK 161
>gi|444518240|gb|ELV12051.1| RNA-binding motif, single-stranded-interacting protein 2 [Tupaia
chinensis]
Length = 354
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 57/103 (55%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA+ L +Q + K P+ NLY+S LP
Sbjct: 92 TTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQQEQDPT-------NLYISNLPL 144
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE + P+G++I++RIL DN T G ++ + E+
Sbjct: 145 SMDEQELEGMLKPFGQVISTRILRDNSGTSRGVGFARMESTEK 187
>gi|195540047|gb|AAI67880.1| LOC100036596 protein [Xenopus (Silurana) tropicalis]
Length = 399
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 56/97 (57%), Gaps = 7/97 (7%)
Query: 37 GYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQQE 96
GYGFV++ P A+KA++ L +Q + K P+ NLY+S LP M +QE
Sbjct: 97 GYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPT-------NLYISNLPLSMDEQE 149
Query: 97 LESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
LES+ P+G++I++RIL D+ T G ++ + E+
Sbjct: 150 LESMLKPFGQVISTRILRDSSGTSRGVGFARMESTEK 186
>gi|148224229|ref|NP_001090632.1| RNA binding motif, single stranded interacting protein 1 [Xenopus
(Silurana) tropicalis]
gi|113197750|gb|AAI21676.1| LOC100036596 protein [Xenopus (Silurana) tropicalis]
Length = 406
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 56/97 (57%), Gaps = 7/97 (7%)
Query: 37 GYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQQE 96
GYGFV++ P A+KA++ L +Q + K P+ NLY+S LP M +QE
Sbjct: 104 GYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPT-------NLYISNLPLSMDEQE 156
Query: 97 LESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
LES+ P+G++I++RIL D+ T G ++ + E+
Sbjct: 157 LESMLKPFGQVISTRILRDSSGTSRGVGFARMESTEK 193
>gi|198419237|ref|XP_002125904.1| PREDICTED: similar to HrTLC2 isoform 2 [Ciona intestinalis]
Length = 434
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 34/97 (35%), Positives = 59/97 (60%), Gaps = 7/97 (7%)
Query: 37 GYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQQE 96
GYGFV++ R + A A+ L +Q + K P+ NLY+S LP+++++QE
Sbjct: 151 GYGFVDFDRYDSASLAVEQLKHRGIQAQMAKQQEQDPT-------NLYISNLPRNINEQE 203
Query: 97 LESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
LE++ SPYG++I++RIL DN + G ++ + +E+
Sbjct: 204 LENMLSPYGQVISTRILRDNNSVSKGVGFARMESKEK 240
>gi|198419235|ref|XP_002125486.1| PREDICTED: similar to HrTLC2 isoform 1 [Ciona intestinalis]
Length = 447
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 34/97 (35%), Positives = 59/97 (60%), Gaps = 7/97 (7%)
Query: 37 GYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQQE 96
GYGFV++ R + A A+ L +Q + K P+ NLY+S LP+++++QE
Sbjct: 164 GYGFVDFDRYDSASLAVEQLKHRGIQAQMAKQQEQDPT-------NLYISNLPRNINEQE 216
Query: 97 LESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
LE++ SPYG++I++RIL DN + G ++ + +E+
Sbjct: 217 LENMLSPYGQVISTRILRDNNSVSKGVGFARMESKEK 253
>gi|348585931|ref|XP_003478724.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein
1-like isoform 2 [Cavia porcellus]
Length = 356
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 59/103 (57%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA++ L +Q + K P+ NLY+S LP
Sbjct: 65 TTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPT-------NLYISNLPL 117
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ PYG++I++RIL D+ T G ++ + E+
Sbjct: 118 SMDEQELENMLKPYGQVISTRILRDSSGTSRGVGFARMESTEK 160
Score = 39.3 bits (90), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 26/40 (65%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+ + NLY+ GLP + + Q+L L PYG+I++++ + D
Sbjct: 24 DQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILD 63
>gi|119631786|gb|EAX11381.1| RNA binding motif, single stranded interacting protein 1, isoform
CRA_a [Homo sapiens]
gi|119631788|gb|EAX11383.1| RNA binding motif, single stranded interacting protein 1, isoform
CRA_a [Homo sapiens]
gi|119631789|gb|EAX11384.1| RNA binding motif, single stranded interacting protein 1, isoform
CRA_a [Homo sapiens]
gi|119631793|gb|EAX11388.1| RNA binding motif, single stranded interacting protein 1, isoform
CRA_a [Homo sapiens]
Length = 180
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 59/105 (56%), Gaps = 7/105 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA++ L +Q + K P+ NLY+S LP
Sbjct: 65 TTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPT-------NLYISNLPL 117
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLR 135
M +QELE++ P+G++I++RIL D+ T G ++ + E+
Sbjct: 118 SMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKWE 162
Score = 42.4 bits (98), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 26/40 (65%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+ + NLY+ GLP H + Q+L L PYG+I++++ + D
Sbjct: 24 DQLSKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILD 63
>gi|62702257|gb|AAX93183.1| unknown [Homo sapiens]
Length = 188
Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 59/103 (57%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA++ L +Q + K P+ NLY+S LP
Sbjct: 73 TTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPT-------NLYISNLPL 125
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G++I++RIL D+ T G ++ + E+
Sbjct: 126 SMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEK 168
Score = 42.4 bits (98), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 26/40 (65%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+ + NLY+ GLP H + Q+L L PYG+I++++ + D
Sbjct: 32 DQLSKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILD 71
>gi|302811197|ref|XP_002987288.1| hypothetical protein SELMODRAFT_269256 [Selaginella moellendorffii]
gi|302815025|ref|XP_002989195.1| hypothetical protein SELMODRAFT_269487 [Selaginella moellendorffii]
gi|300143095|gb|EFJ09789.1| hypothetical protein SELMODRAFT_269487 [Selaginella moellendorffii]
gi|300144923|gb|EFJ11603.1| hypothetical protein SELMODRAFT_269256 [Selaginella moellendorffii]
Length = 567
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 34/86 (39%), Positives = 51/86 (59%), Gaps = 2/86 (2%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKV--SYARPSSESIKGANLYVSGLP 89
T +SLGY +VNY+ +DA +AI LN + + K +++ SY PS NL+V L
Sbjct: 52 TKRSLGYAYVNYNNTQDASRAIEELNFMPVNGKPVRIMFSYRDPSIRKSGSGNLFVKNLD 111
Query: 90 KHMSQQELESLFSPYGRIITSRILCD 115
K + + L LFSPYG+I++ +I D
Sbjct: 112 KSIDNKALHDLFSPYGKILSCKIALD 137
Score = 55.5 bits (132), Expect = 8e-06, Method: Composition-based stats.
Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 17/107 (15%)
Query: 33 AQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYA-----------------RPSS 75
+S +GFVN+ PEDA KA+ L+G Q+K + VS A R +
Sbjct: 229 GKSKCFGFVNFENPEDAVKAVEDLHGTTFQDKELYVSRAQKKNEREAELKAKFEHERKDT 288
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
E NLY+ L + ++L+ +FS +G + + +++ D L G
Sbjct: 289 EDKSPTNLYLKNLDDGIDDEKLKDMFSAFGNVTSCKVMRDPLGHSKG 335
Score = 37.0 bits (84), Expect = 2.9, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 10/86 (11%)
Query: 35 SLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVS-YAR------PSSESIKGANLYVSG 87
S G+GFV + + A AI +NG L +K + V + R P+S K N++V
Sbjct: 142 SKGHGFVQFDTEDAAHTAIEKINGTTLHDKQLFVGPFVRRQERDPPAS---KFNNVFVKN 198
Query: 88 LPKHMSQQELESLFSPYGRIITSRIL 113
L + + ++L+ LF +G I ++ ++
Sbjct: 199 LSEITTDEDLQKLFGVFGPISSAVVM 224
>gi|395519618|ref|XP_003763940.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 1
isoform 2 [Sarcophilus harrisii]
Length = 356
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 59/103 (57%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA++ L +Q + K P+ NLY+S LP
Sbjct: 65 TTNKCKGYGFVDFDSPAAAQKAVSALKATGVQAQMAKQQEQDPT-------NLYISNLPL 117
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G++I++RIL D+ T G ++ + E+
Sbjct: 118 SMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEK 160
Score = 39.3 bits (90), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 26/40 (65%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+ + NLY+ GLP + + Q+L L PYG+I++++ + D
Sbjct: 24 DQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILD 63
>gi|334330107|ref|XP_001366652.2| PREDICTED: RNA-binding motif, single-stranded-interacting protein 1
isoform 3 [Monodelphis domestica]
Length = 356
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 59/103 (57%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA++ L +Q + K P+ NLY+S LP
Sbjct: 65 TTNKCKGYGFVDFDSPAAAQKAVSALKATGVQAQMAKQQEQDPT-------NLYISNLPL 117
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G++I++RIL D+ T G ++ + E+
Sbjct: 118 SMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEK 160
Score = 39.3 bits (90), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 26/40 (65%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+ + NLY+ GLP + + Q+L L PYG+I++++ + D
Sbjct: 24 DQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILD 63
>gi|149639490|ref|XP_001510957.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein
1-like isoform 1 [Ornithorhynchus anatinus]
Length = 403
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 56/97 (57%), Gaps = 7/97 (7%)
Query: 37 GYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQQE 96
GYGFV++ P A+KA++ L +Q + K P+ NLY+S LP M +QE
Sbjct: 104 GYGFVDFDSPAAAQKAVSALKATGVQAQMAKQQEQDPT-------NLYISNLPLSMDEQE 156
Query: 97 LESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
LE++ P+G++I++RIL D+ T G ++ + E+
Sbjct: 157 LENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEK 193
Score = 38.9 bits (89), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 26/40 (65%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+ + NLY+ GLP + + Q+L L PYG+I++++ + D
Sbjct: 57 DQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILD 96
>gi|224137600|ref|XP_002327166.1| predicted protein [Populus trichocarpa]
gi|222835481|gb|EEE73916.1| predicted protein [Populus trichocarpa]
Length = 632
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 2/95 (2%)
Query: 30 ISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSG 87
+ST +SLGYG+VNY P+DA +A++ LN L NK I++ Y+ PS AN+++
Sbjct: 47 LSTRRSLGYGYVNYSNPQDAARALDVLNFTPLNNKPIRIMYSHRDPSIRKSGMANIFIKN 106
Query: 88 LPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
L K + + L FS +G I++ ++ D G
Sbjct: 107 LDKGIDHKALHDTFSSFGNILSCKVATDASGQSKG 141
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 53/91 (58%), Gaps = 6/91 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE------SIKGANLY 84
++ QS GYGFV + E A+ AI+ LNG+ + +K + V + + SIK N++
Sbjct: 135 ASGQSKGYGFVQFDSEEAAQNAIDKLNGMLVNDKQVYVGHFLRKQDRDGALYSIKFNNVF 194
Query: 85 VSGLPKHMSQQELESLFSPYGRIITSRILCD 115
V L + + +EL+++F+ +G I ++ ++ D
Sbjct: 195 VKNLAESTTDEELKNIFAEHGAITSAVVMRD 225
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 31/124 (25%), Positives = 54/124 (43%), Gaps = 18/124 (14%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE-------------- 76
+ +S +GFVN+ +DA KA+ LNG ++ + V A+ SE
Sbjct: 226 ADGKSKCFGFVNFESADDAAKAVEALNGKKIDGEEWYVGKAQKKSERELELKGRFEQSMK 285
Query: 77 ----SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRE 132
+G NLY+ L ++ ++L+ LFS +G I + +++ D G + E
Sbjct: 286 ETVDKFQGLNLYIKNLDDSINDEKLKELFSDFGAITSCKVMRDPSGISRGSGFVAFSTPE 345
Query: 133 RLRR 136
R
Sbjct: 346 EASR 349
>gi|395846669|ref|XP_003796023.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 1
[Otolemur garnettii]
Length = 389
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 59/103 (57%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA++ L +Q + K P+ NLY+S LP
Sbjct: 65 TTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPT-------NLYISNLPL 117
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ PYG++I++RIL D+ T G ++ + E+
Sbjct: 118 SMDEQELENMLKPYGQVISTRILRDSNGTSRGVGFARMESTEK 160
Score = 39.3 bits (90), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 26/40 (65%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+ + NLY+ GLP + + Q+L L PYG+I++++ + D
Sbjct: 24 DQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILD 63
>gi|344268402|ref|XP_003406049.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein
1-like [Loxodonta africana]
Length = 446
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 59/103 (57%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA++ L +Q + K P+ NLY+S LP
Sbjct: 141 TTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPT-------NLYISNLPL 193
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G++I++RIL D+ T G ++ + E+
Sbjct: 194 SMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEK 236
Score = 38.9 bits (89), Expect = 0.69, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 28/49 (57%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKY 124
+ + NLY+ GLP + + Q+L L PYG+I++++ + D + Y
Sbjct: 100 DQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGY 148
>gi|126326231|ref|XP_001366555.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 1
isoform 1 [Monodelphis domestica]
Length = 403
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 59/103 (57%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA++ L +Q + K P+ NLY+S LP
Sbjct: 98 TTNKCKGYGFVDFDSPAAAQKAVSALKATGVQAQMAKQQEQDPT-------NLYISNLPL 150
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G++I++RIL D+ T G ++ + E+
Sbjct: 151 SMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEK 193
Score = 39.3 bits (90), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 26/40 (65%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+ + NLY+ GLP + + Q+L L PYG+I++++ + D
Sbjct: 57 DQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILD 96
>gi|348585929|ref|XP_003478723.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein
1-like isoform 1 [Cavia porcellus]
Length = 403
Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 59/103 (57%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA++ L +Q + K P+ NLY+S LP
Sbjct: 98 TTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPT-------NLYISNLPL 150
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ PYG++I++RIL D+ T G ++ + E+
Sbjct: 151 SMDEQELENMLKPYGQVISTRILRDSSGTSRGVGFARMESTEK 193
Score = 38.9 bits (89), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 26/40 (65%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+ + NLY+ GLP + + Q+L L PYG+I++++ + D
Sbjct: 57 DQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILD 96
>gi|395519616|ref|XP_003763939.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 1
isoform 1 [Sarcophilus harrisii]
Length = 390
Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 59/103 (57%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA++ L +Q + K P+ NLY+S LP
Sbjct: 85 TTNKCKGYGFVDFDSPAAAQKAVSALKATGVQAQMAKQQEQDPT-------NLYISNLPL 137
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G++I++RIL D+ T G ++ + E+
Sbjct: 138 SMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEK 180
Score = 39.3 bits (90), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 26/40 (65%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+ + NLY+ GLP + + Q+L L PYG+I++++ + D
Sbjct: 44 DQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILD 83
>gi|114646270|ref|XP_001141536.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 2
isoform 2 [Pan troglodytes]
Length = 377
Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 57/103 (55%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA+ L +Q + +K P+ NLY+S LP
Sbjct: 62 TTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMVKQQEQDPT-------NLYISNLPL 114
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE + P+G++I++RIL D T G ++ + E+
Sbjct: 115 SMDEQELEGMLKPFGQVISTRILRDTSGTSRGVGFARMESTEK 157
>gi|432859917|ref|XP_004069300.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein
2-like [Oryzias latipes]
Length = 461
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 36/103 (34%), Positives = 57/103 (55%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA+ L +Q + K P+ NLY+S LP
Sbjct: 156 TTNKCKGYGFVDFDSPAAAQKAVTALKSSGVQAQMAKQQEQDPT-------NLYISNLPV 208
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELES+ P+G++I++RIL D T G ++ + E+
Sbjct: 209 SMDEQELESMLKPFGQVISTRILRDANGTSRGVGFARMESTEK 251
Score = 35.4 bits (80), Expect = 8.0, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 26/49 (53%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKY 124
E + NLY+ GL + Q+L L PYG+I++++ + D + Y
Sbjct: 115 EQLSKTNLYIRGLHPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGY 163
>gi|449275376|gb|EMC84248.1| RNA-binding motif, single-stranded-interacting protein 1, partial
[Columba livia]
Length = 382
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 56/97 (57%), Gaps = 7/97 (7%)
Query: 37 GYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQQE 96
GYGFV++ P A+KA++ L +Q + K P+ NLY+S LP M +QE
Sbjct: 80 GYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPT-------NLYISNLPLSMDEQE 132
Query: 97 LESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
LE++ P+G++I++RIL D+ T G ++ + E+
Sbjct: 133 LENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEK 169
Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 25/40 (62%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+ + NLY+ LP + + Q+L L PYG+I++++ + D
Sbjct: 33 DQLSKTNLYIRALPPNTTDQDLVKLCQPYGKIVSTKAILD 72
>gi|390464467|ref|XP_002749450.2| PREDICTED: RNA-binding motif, single-stranded-interacting protein
1-like, partial [Callithrix jacchus]
Length = 213
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 59/103 (57%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA++ L +Q + K P+ NLY+S LP
Sbjct: 98 TTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPT-------NLYISNLPL 150
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G++I++RIL D+ T G ++ + E+
Sbjct: 151 SMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEK 193
Score = 42.4 bits (98), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 26/40 (65%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+ + NLY+ GLP H + Q+L L PYG+I++++ + D
Sbjct: 57 DQLSKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILD 96
>gi|326922850|ref|XP_003207657.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein
1-like [Meleagris gallopavo]
Length = 424
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 59/103 (57%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA++ L +Q + K P+ NLY+S LP
Sbjct: 119 TTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPT-------NLYISNLPL 171
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G++I++RIL D+ T G ++ + E+
Sbjct: 172 SMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEK 214
Score = 36.6 bits (83), Expect = 3.5, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 27/49 (55%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKY 124
+ + NLY+ LP + + Q+L L PYG+I++++ + D + Y
Sbjct: 78 DQLSKTNLYIRALPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGY 126
>gi|410968720|ref|XP_003990849.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 1
[Felis catus]
Length = 389
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 59/103 (57%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA++ L +Q + K P+ NLY+S LP
Sbjct: 65 TTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPT-------NLYISNLPL 117
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G++I++RIL D+ T G ++ + E+
Sbjct: 118 SMDEQELETMLKPFGQVISTRILRDSSGTSRGVGFARMESTEK 160
Score = 39.3 bits (90), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 26/40 (65%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+ + NLY+ GLP + + Q+L L PYG+I++++ + D
Sbjct: 24 DQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILD 63
>gi|395732398|ref|XP_003776061.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 1
isoform 3 [Pongo abelii]
Length = 419
Score = 68.9 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 59/103 (57%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA++ L +Q + K P+ NLY+S LP
Sbjct: 98 TTNKCKGYGFVDFDSPAAAQKAVSALKASGIQAQMAKQQEQDPT-------NLYISNLPL 150
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G++I++RIL D+ T G ++ + E+
Sbjct: 151 SMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEK 193
Score = 41.6 bits (96), Expect = 0.12, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 28/49 (57%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKY 124
+ + NLY+ GLP H + Q+L L PYG+I++++ + D + Y
Sbjct: 57 DQLSKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGY 105
>gi|449506577|ref|XP_002196753.2| PREDICTED: RNA-binding motif, single-stranded-interacting protein 1
[Taeniopygia guttata]
Length = 403
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 56/97 (57%), Gaps = 7/97 (7%)
Query: 37 GYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQQE 96
GYGFV++ P A+KA++ L +Q + K P+ NLY+S LP M +QE
Sbjct: 104 GYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPT-------NLYISNLPLSMDEQE 156
Query: 97 LESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
LE++ P+G++I++RIL D+ T G ++ + E+
Sbjct: 157 LENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEK 193
Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 25/40 (62%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+ + NLY+ LP + + Q+L L PYG+I++++ + D
Sbjct: 57 DQLSKTNLYIRALPPNTTDQDLVKLCQPYGKIVSTKAILD 96
>gi|380807335|gb|AFE75543.1| RNA-binding motif, single-stranded-interacting protein 1 isoform a,
partial [Macaca mulatta]
Length = 243
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 59/103 (57%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA++ L +Q + K P+ NLY+S LP
Sbjct: 79 TTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPT-------NLYISNLPL 131
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G++I++RIL D+ T G ++ + E+
Sbjct: 132 SMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEK 174
Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 26/40 (65%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+ + NLY+ GLP + + Q+L L PYG+I++++ + D
Sbjct: 38 DQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILD 77
>gi|339522363|gb|AEJ84346.1| RNA-binding motif single-stranded-interacting protein 1 [Capra
hircus]
Length = 418
Score = 68.9 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 59/103 (57%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA++ L +Q + K P+ NLY+S LP
Sbjct: 97 TTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPT-------NLYISNLPL 149
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G++I++RIL D+ T G ++ + E+
Sbjct: 150 SMGEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEK 192
Score = 37.7 bits (86), Expect = 1.7, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 27/49 (55%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKY 124
E + NLY+ GLP + + Q+ L PYG+I++++ + D + Y
Sbjct: 56 EQLSKTNLYIRGLPPNTTDQDRVKLCQPYGKIVSTKAILDKTTNKCKGY 104
>gi|301610019|ref|XP_002934573.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein
2-like [Xenopus (Silurana) tropicalis]
Length = 389
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 54/97 (55%), Gaps = 7/97 (7%)
Query: 37 GYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQQE 96
GYGFV++ P A+KA+ L +Q + K P+ NLY+S LP M +QE
Sbjct: 93 GYGFVDFDSPGAAQKAVTALKASGVQAQMAKQQEQDPT-------NLYISNLPVSMDEQE 145
Query: 97 LESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
LESL P+G++I++RIL D T G ++ + E+
Sbjct: 146 LESLLKPFGQVISTRILRDASGTSRGVGFARMESTEK 182
>gi|45384304|ref|NP_990355.1| RNA-binding motif, single-stranded-interacting protein 1 [Gallus
gallus]
gi|3116231|dbj|BAA25933.1| MSSP-1 [Gallus gallus]
Length = 373
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 59/103 (57%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA++ L +Q + K P+ NLY+S LP
Sbjct: 65 TTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPT-------NLYISNLPL 117
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G++I++RIL D+ T G ++ + E+
Sbjct: 118 SMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEK 160
Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 25/40 (62%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+ + NLY+ LP + + Q+L L PYG+I++++ + D
Sbjct: 24 DQLSKTNLYIRALPPNTTDQDLVKLCQPYGKIVSTKAILD 63
>gi|395732394|ref|XP_003776060.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 1
isoform 2 [Pongo abelii]
Length = 389
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 59/103 (57%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA++ L +Q + K P+ NLY+S LP
Sbjct: 65 TTNKCKGYGFVDFDSPAAAQKAVSALKASGIQAQMAKQQEQDPT-------NLYISNLPL 117
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G++I++RIL D+ T G ++ + E+
Sbjct: 118 SMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEK 160
Score = 42.0 bits (97), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 26/40 (65%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+ + NLY+ GLP H + Q+L L PYG+I++++ + D
Sbjct: 24 DQLSKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILD 63
>gi|344267508|ref|XP_003405608.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein
2-like [Loxodonta africana]
Length = 439
Score = 68.9 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA+ L +Q + K P+ NLY+S LP
Sbjct: 124 TTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQQEQDPT-------NLYISNLPL 176
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE + P+G++I++RIL D T G ++ + E+
Sbjct: 177 SMDEQELEGMLKPFGQVISTRILRDTSGTSRGVGFARMESTEK 219
>gi|224063493|ref|XP_002301171.1| predicted protein [Populus trichocarpa]
gi|222842897|gb|EEE80444.1| predicted protein [Populus trichocarpa]
Length = 657
Score = 68.9 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 33/95 (34%), Positives = 54/95 (56%), Gaps = 2/95 (2%)
Query: 30 ISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSG 87
+ST +SLGYG+VNY P+DA +A++ LN L NK +++ Y+ PS AN+++
Sbjct: 66 LSTRRSLGYGYVNYSNPQDAARALDVLNFTPLNNKPLRIMYSHRDPSIRKSGMANIFIKN 125
Query: 88 LPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
L K + + L FS +G I++ ++ D G
Sbjct: 126 LDKTIDHKALHDTFSSFGNILSCKVATDASGQSKG 160
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 53/91 (58%), Gaps = 6/91 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKV-----SYARPSSES-IKGANLY 84
++ QS GYGFV + E A+ AI+ LNG+ + +K + V R S+ S IK N+Y
Sbjct: 154 ASGQSKGYGFVQFDSEEAAQNAIDKLNGMLINDKQVYVGNFLRKQERDSALSNIKFNNIY 213
Query: 85 VSGLPKHMSQQELESLFSPYGRIITSRILCD 115
V L + + ++L+S+F +G I ++ ++ D
Sbjct: 214 VKNLAESTTDEDLKSIFEEHGAITSAVVMRD 244
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 33/123 (26%), Positives = 55/123 (44%), Gaps = 17/123 (13%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE---SIKG------- 80
+ +S +GFVN+ +DA KA+ LNG + +K V A+ SE +KG
Sbjct: 245 ADGKSKCFGFVNFENVDDAAKAVEALNGKKFDDKEWYVGKAQKKSERELELKGRFEQSLE 304
Query: 81 -------ANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
NLY+ L ++ ++L+ LFS +G I + +++ D G + E
Sbjct: 305 SVEKYQAVNLYIKNLDDSVNDEKLKELFSDFGTITSCKVMHDPSGISRGSGFVAFSTPEE 364
Query: 134 LRR 136
R
Sbjct: 365 ASR 367
>gi|291391615|ref|XP_002712257.1| PREDICTED: RNA binding motif, single stranded interacting protein 1
[Oryctolagus cuniculus]
Length = 356
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 59/103 (57%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA++ L +Q + K P+ NLY+S LP
Sbjct: 65 TTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPT-------NLYISNLPL 117
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G++I++RIL D+ T G ++ + E+
Sbjct: 118 SMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEK 160
Score = 39.3 bits (90), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 26/40 (65%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+ + NLY+ GLP + + Q+L L PYG+I++++ + D
Sbjct: 24 DQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILD 63
>gi|355715846|gb|AES05421.1| RNA binding motif, single stranded interacting protein 1 [Mustela
putorius furo]
Length = 223
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 59/103 (57%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA++ L +Q + K P+ NLY+S LP
Sbjct: 73 TTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPT-------NLYISNLPL 125
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G++I++RIL D+ T G ++ + E+
Sbjct: 126 SMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEK 168
Score = 39.3 bits (90), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 26/40 (65%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+ + NLY+ GLP + + Q+L L PYG+I++++ + D
Sbjct: 32 DQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILD 71
>gi|380807337|gb|AFE75544.1| RNA-binding motif, single-stranded-interacting protein 1 isoform c,
partial [Macaca mulatta]
Length = 240
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 59/103 (57%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA++ L +Q + K P+ NLY+S LP
Sbjct: 79 TTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPT-------NLYISNLPL 131
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G++I++RIL D+ T G ++ + E+
Sbjct: 132 SMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEK 174
Score = 39.3 bits (90), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 26/40 (65%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+ + NLY+ GLP + + Q+L L PYG+I++++ + D
Sbjct: 38 DQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILD 77
>gi|301787247|ref|XP_002929039.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein
1-like [Ailuropoda melanoleuca]
Length = 405
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 59/103 (57%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA++ L +Q + K P+ NLY+S LP
Sbjct: 100 TTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPT-------NLYISNLPL 152
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G++I++RIL D+ T G ++ + E+
Sbjct: 153 SMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEK 195
Score = 38.9 bits (89), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 26/40 (65%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+ + NLY+ GLP + + Q+L L PYG+I++++ + D
Sbjct: 59 DQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILD 98
>gi|402888465|ref|XP_003907581.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 1
isoform 2 [Papio anubis]
Length = 419
Score = 68.9 bits (167), Expect = 7e-10, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 59/103 (57%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA++ L +Q + K P+ NLY+S LP
Sbjct: 98 TTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPT-------NLYISNLPL 150
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G++I++RIL D+ T G ++ + E+
Sbjct: 151 SMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEK 193
Score = 38.5 bits (88), Expect = 0.86, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 28/49 (57%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKY 124
+ + NLY+ GLP + + Q+L L PYG+I++++ + D + Y
Sbjct: 57 DQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGY 105
>gi|327283354|ref|XP_003226406.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein
1-like [Anolis carolinensis]
Length = 404
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 59/103 (57%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA++ L +Q + K P+ NLY+S LP
Sbjct: 100 TTNKCKGYGFVDFDSPAAAQKAVSALKATGVQAQMAKQQEQDPT-------NLYISNLPL 152
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G++I++RIL D+ T G ++ + E+
Sbjct: 153 SMDEQELENMLKPFGQVISTRILRDSNGTSRGVGFARMESTEK 195
Score = 38.9 bits (89), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 26/40 (65%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+ + NLY+ GLP + + Q+L L PYG+I++++ + D
Sbjct: 59 DQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILD 98
>gi|297264157|ref|XP_001091917.2| PREDICTED: RNA-binding motif, single-stranded-interacting protein
1-like [Macaca mulatta]
Length = 422
Score = 68.9 bits (167), Expect = 7e-10, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 59/103 (57%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA++ L +Q + K P+ NLY+S LP
Sbjct: 98 TTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPT-------NLYISNLPL 150
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G++I++RIL D+ T G ++ + E+
Sbjct: 151 SMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEK 193
Score = 38.5 bits (88), Expect = 0.86, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 28/49 (57%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKY 124
+ + NLY+ GLP + + Q+L L PYG+I++++ + D + Y
Sbjct: 57 DQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGY 105
>gi|332234025|ref|XP_003266208.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 1
isoform 3 [Nomascus leucogenys]
gi|332814560|ref|XP_003309323.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 1
isoform 2 [Pan troglodytes]
gi|194387572|dbj|BAG60150.1| unnamed protein product [Homo sapiens]
Length = 419
Score = 68.9 bits (167), Expect = 7e-10, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 59/103 (57%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA++ L +Q + K P+ NLY+S LP
Sbjct: 98 TTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPT-------NLYISNLPL 150
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G++I++RIL D+ T G ++ + E+
Sbjct: 151 SMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEK 193
Score = 41.6 bits (96), Expect = 0.12, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 28/49 (57%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKY 124
+ + NLY+ GLP H + Q+L L PYG+I++++ + D + Y
Sbjct: 57 DQLSKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGY 105
>gi|410964971|ref|XP_003989026.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein
2, partial [Felis catus]
Length = 385
Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
ST + GYGFV++ P A+KA+ L +Q + K P+ NLY+S LP
Sbjct: 70 STNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQQEQDPT-------NLYISNLPL 122
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE + P+G++I++RIL D T G ++ + E+
Sbjct: 123 SMDEQELEGMLKPFGQVISTRILRDTSGTSRGVGFARMESTEK 165
>gi|119631791|gb|EAX11386.1| RNA binding motif, single stranded interacting protein 1, isoform
CRA_d [Homo sapiens]
Length = 371
Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 59/105 (56%), Gaps = 7/105 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA++ L +Q + K P+ NLY+S LP
Sbjct: 65 TTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPT-------NLYISNLPL 117
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLR 135
M +QELE++ P+G++I++RIL D+ T G ++ + E+
Sbjct: 118 SMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKWE 162
Score = 42.0 bits (97), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 26/40 (65%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+ + NLY+ GLP H + Q+L L PYG+I++++ + D
Sbjct: 24 DQLSKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILD 63
>gi|453413|emb|CAA54628.1| MSSP-2 [Homo sapiens]
Length = 389
Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 59/103 (57%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA++ L +Q + K P+ NLY+S LP
Sbjct: 65 TTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPT-------NLYISNLPL 117
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G++I++RIL D+ T G ++ + E+
Sbjct: 118 SMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEK 160
Score = 42.0 bits (97), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 26/40 (65%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+ + NLY+ GLP H + Q+L L PYG+I++++ + D
Sbjct: 24 DQLSKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILD 63
>gi|351711948|gb|EHB14867.1| RNA-binding motif, single-stranded-interacting protein 1, partial
[Heterocephalus glaber]
Length = 382
Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 59/103 (57%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA++ L +Q + K P+ NLY+S LP
Sbjct: 74 TTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPT-------NLYISNLPL 126
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G++I++RIL D+ T G ++ + E+
Sbjct: 127 SMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEK 169
Score = 38.9 bits (89), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 26/40 (65%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+ + NLY+ GLP + + Q+L L PYG+I++++ + D
Sbjct: 33 DQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILD 72
>gi|332234021|ref|XP_003266206.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 1
isoform 1 [Nomascus leucogenys]
gi|332814556|ref|XP_003309322.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 1
isoform 1 [Pan troglodytes]
gi|397500598|ref|XP_003820996.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 1
[Pan paniscus]
gi|426337503|ref|XP_004032743.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 1
[Gorilla gorilla gorilla]
Length = 389
Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 59/103 (57%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA++ L +Q + K P+ NLY+S LP
Sbjct: 65 TTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPT-------NLYISNLPL 117
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G++I++RIL D+ T G ++ + E+
Sbjct: 118 SMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEK 160
Score = 42.0 bits (97), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 26/40 (65%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+ + NLY+ GLP H + Q+L L PYG+I++++ + D
Sbjct: 24 DQLSKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILD 63
>gi|403258920|ref|XP_003921989.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 1
[Saimiri boliviensis boliviensis]
Length = 389
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 59/103 (57%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA++ L +Q + K P+ NLY+S LP
Sbjct: 65 TTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPT-------NLYISNLPL 117
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G++I++RIL D+ T G ++ + E+
Sbjct: 118 SMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEK 160
Score = 42.0 bits (97), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 26/40 (65%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+ + NLY+ GLP H + Q+L L PYG+I++++ + D
Sbjct: 24 DQLSKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILD 63
>gi|380793383|gb|AFE68567.1| RNA-binding motif, single-stranded-interacting protein 2, partial
[Macaca mulatta]
Length = 232
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA+ L +Q + K P+ NLY+S LP
Sbjct: 92 TTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQQEQDPT-------NLYISNLPL 144
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE + P+G++I++RIL D T G ++ + E+
Sbjct: 145 SMDEQELEGMLKPFGQVISTRILRDTSGTSRGVGFARMESTEK 187
>gi|345797246|ref|XP_535930.3| PREDICTED: RNA-binding motif, single-stranded-interacting protein 1
[Canis lupus familiaris]
Length = 389
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 59/103 (57%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA++ L +Q + K P+ NLY+S LP
Sbjct: 65 TTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPT-------NLYISNLPL 117
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G++I++RIL D+ T G ++ + E+
Sbjct: 118 SMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEK 160
Score = 39.3 bits (90), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 26/40 (65%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+ + NLY+ GLP + + Q+L L PYG+I++++ + D
Sbjct: 24 DQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILD 63
>gi|355564921|gb|EHH21410.1| hypothetical protein EGK_04471, partial [Macaca mulatta]
gi|355750567|gb|EHH54894.1| hypothetical protein EGM_03996, partial [Macaca fascicularis]
Length = 382
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 59/103 (57%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA++ L +Q + K P+ NLY+S LP
Sbjct: 74 TTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPT-------NLYISNLPL 126
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G++I++RIL D+ T G ++ + E+
Sbjct: 127 SMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEK 169
Score = 38.9 bits (89), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 26/40 (65%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+ + NLY+ GLP + + Q+L L PYG+I++++ + D
Sbjct: 33 DQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILD 72
>gi|119631792|gb|EAX11387.1| RNA binding motif, single stranded interacting protein 1, isoform
CRA_e [Homo sapiens]
Length = 384
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 59/105 (56%), Gaps = 7/105 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA++ L +Q + K P+ NLY+S LP
Sbjct: 65 TTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPT-------NLYISNLPL 117
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLR 135
M +QELE++ P+G++I++RIL D+ T G ++ + E+
Sbjct: 118 SMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKWE 162
Score = 42.0 bits (97), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 26/40 (65%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+ + NLY+ GLP H + Q+L L PYG+I++++ + D
Sbjct: 24 DQLSKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILD 63
>gi|440904825|gb|ELR55286.1| RNA-binding motif, single-stranded-interacting protein 1, partial
[Bos grunniens mutus]
Length = 382
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 59/103 (57%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA++ L +Q + K P+ NLY+S LP
Sbjct: 74 TTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPT-------NLYISNLPL 126
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G++I++RIL D+ T G ++ + E+
Sbjct: 127 SMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEK 169
Score = 38.9 bits (89), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 26/40 (65%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+ + NLY+ GLP + + Q+L L PYG+I++++ + D
Sbjct: 33 DQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILD 72
>gi|281348070|gb|EFB23654.1| hypothetical protein PANDA_019121 [Ailuropoda melanoleuca]
Length = 383
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 59/103 (57%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA++ L +Q + K P+ NLY+S LP
Sbjct: 75 TTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPT-------NLYISNLPL 127
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G++I++RIL D+ T G ++ + E+
Sbjct: 128 SMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEK 170
Score = 39.3 bits (90), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 26/40 (65%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+ + NLY+ GLP + + Q+L L PYG+I++++ + D
Sbjct: 34 DQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILD 73
>gi|332234027|ref|XP_003266209.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 1
isoform 4 [Nomascus leucogenys]
Length = 370
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 59/103 (57%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA++ L +Q + K P+ NLY+S LP
Sbjct: 65 TTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPT-------NLYISNLPL 117
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G++I++RIL D+ T G ++ + E+
Sbjct: 118 SMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEK 160
Score = 42.0 bits (97), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 26/40 (65%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+ + NLY+ GLP H + Q+L L PYG+I++++ + D
Sbjct: 24 DQLSKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILD 63
>gi|119631790|gb|EAX11385.1| RNA binding motif, single stranded interacting protein 1, isoform
CRA_c [Homo sapiens]
Length = 346
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 59/104 (56%), Gaps = 7/104 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA++ L +Q + K P+ NLY+S LP
Sbjct: 65 TTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPT-------NLYISNLPL 117
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERL 134
M +QELE++ P+G++I++RIL D+ T G ++ + E+
Sbjct: 118 SMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKW 161
Score = 42.4 bits (98), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 26/40 (65%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+ + NLY+ GLP H + Q+L L PYG+I++++ + D
Sbjct: 24 DQLSKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILD 63
>gi|281353275|gb|EFB28859.1| hypothetical protein PANDA_004096 [Ailuropoda melanoleuca]
Length = 333
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
ST + GYGFV++ P A+KA+ L +Q + K P+ NLY+S LP
Sbjct: 71 STNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQQEQDPT-------NLYISNLPL 123
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE + P+G++I++RIL D T G ++ + E+
Sbjct: 124 SMDEQELEGMLKPFGQVISTRILRDTRGTSRGVGFARMESTEK 166
>gi|395732396|ref|XP_002812563.2| PREDICTED: RNA-binding motif, single-stranded-interacting protein 1
isoform 1 [Pongo abelii]
Length = 403
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 59/103 (57%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA++ L +Q + K P+ NLY+S LP
Sbjct: 98 TTNKCKGYGFVDFDSPAAAQKAVSALKASGIQAQMAKQQEQDPT-------NLYISNLPL 150
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G++I++RIL D+ T G ++ + E+
Sbjct: 151 SMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEK 193
Score = 42.0 bits (97), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 26/40 (65%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+ + NLY+ GLP H + Q+L L PYG+I++++ + D
Sbjct: 57 DQLSKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILD 96
>gi|431894849|gb|ELK04642.1| RNA-binding motif, single-stranded-interacting protein 1 [Pteropus
alecto]
Length = 394
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 59/103 (57%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA++ L +Q + K P+ NLY+S LP
Sbjct: 65 TTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPT-------NLYISNLPL 117
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G++I++RIL D+ T G ++ + E+
Sbjct: 118 SMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEK 160
Score = 39.3 bits (90), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 26/40 (65%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+ + NLY+ GLP + + Q+L L PYG+I++++ + D
Sbjct: 24 DQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILD 63
>gi|73968414|ref|XP_538236.2| PREDICTED: RNA-binding motif, single-stranded-interacting protein 2
isoform 1 [Canis lupus familiaris]
Length = 407
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
ST + GYGFV++ P A+KA+ L +Q + K P+ NLY+S LP
Sbjct: 92 STNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQQEQDPT-------NLYISNLPL 144
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE + P+G++I++RIL D T G ++ + E+
Sbjct: 145 SMDEQELEGMLKPFGQVISTRILRDTSGTSRGVGFARMESTEK 187
>gi|298710320|emb|CBJ31940.1| Xel-1 protein [Ectocarpus siliculosus]
Length = 573
Score = 68.6 bits (166), Expect = 9e-10, Method: Composition-based stats.
Identities = 35/75 (46%), Positives = 48/75 (64%)
Query: 27 VFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVS 86
V+ ST +S+GYGFV + E A A +NG+ + K IKVS ARPSS+ IK + LYV+
Sbjct: 140 VYDRSTGKSMGYGFVKFTTNEAAAAATLAINGMAIDRKRIKVSIARPSSKDIKNSKLYVT 199
Query: 87 GLPKHMSQQELESLF 101
LP H SQ ++ +F
Sbjct: 200 NLPDHFSQDQVVEVF 214
>gi|13898849|gb|AAK48899.1|AF357912_1 ribonucleoprotein [Labeo rohita]
Length = 179
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/37 (86%), Positives = 33/37 (89%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKV 68
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKV
Sbjct: 112 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKV 148
>gi|350593521|ref|XP_003133475.3| PREDICTED: RNA-binding motif, single-stranded-interacting protein
1-like [Sus scrofa]
Length = 403
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 59/103 (57%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA++ L +Q + K P+ NLY+S LP
Sbjct: 98 TTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPT-------NLYISNLPL 150
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G++I++RIL D+ T G ++ + E+
Sbjct: 151 SMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEK 193
Score = 38.9 bits (89), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 26/40 (65%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+ + NLY+ GLP + + Q+L L PYG+I++++ + D
Sbjct: 57 DQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILD 96
>gi|395537932|ref|XP_003770942.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 2
[Sarcophilus harrisii]
Length = 260
Score = 68.2 bits (165), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA+ L +Q + K P+ NLY+S LP
Sbjct: 92 TTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQQEQDPT-------NLYISNLPV 144
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE + P+G++I++RIL D T G ++ + E+
Sbjct: 145 TMDEQELEGMLKPFGQVISTRILRDTSGTSRGVGFARMESTEK 187
>gi|8400718|ref|NP_058520.1| RNA-binding motif, single-stranded-interacting protein 1 isoform a
[Homo sapiens]
gi|55977783|sp|P29558.3|RBMS1_HUMAN RecName: Full=RNA-binding motif, single-stranded-interacting
protein 1; AltName: Full=Single-stranded DNA-binding
protein MSSP-1; AltName: Full=Suppressor of CDC2 with
RNA-binding motif 2
gi|17511979|gb|AAH18951.1| RNA binding motif, single stranded interacting protein 1 [Homo
sapiens]
gi|312152474|gb|ADQ32749.1| RNA binding motif, single stranded interacting protein 1 [synthetic
construct]
gi|410222062|gb|JAA08250.1| RNA binding motif, single stranded interacting protein 1 [Pan
troglodytes]
gi|410296208|gb|JAA26704.1| RNA binding motif, single stranded interacting protein 1 [Pan
troglodytes]
gi|410338639|gb|JAA38266.1| RNA binding motif, single stranded interacting protein 1 [Pan
troglodytes]
Length = 406
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 59/103 (57%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA++ L +Q + K P+ NLY+S LP
Sbjct: 98 TTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPT-------NLYISNLPL 150
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G++I++RIL D+ T G ++ + E+
Sbjct: 151 SMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEK 193
Score = 42.0 bits (97), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 26/40 (65%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+ + NLY+ GLP H + Q+L L PYG+I++++ + D
Sbjct: 57 DQLSKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILD 96
>gi|426221033|ref|XP_004004716.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 1
[Ovis aries]
Length = 406
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 59/103 (57%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA++ L +Q + K P+ NLY+S LP
Sbjct: 98 TTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPT-------NLYISNLPL 150
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G++I++RIL D+ T G ++ + E+
Sbjct: 151 SMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEK 193
Score = 38.9 bits (89), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 26/40 (65%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+ + NLY+ GLP + + Q+L L PYG+I++++ + D
Sbjct: 57 DQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILD 96
>gi|78369252|ref|NP_001030438.1| RNA-binding motif, single-stranded-interacting protein 1 [Bos
taurus]
gi|122143021|sp|Q3ZBP3.1|RBMS1_BOVIN RecName: Full=RNA-binding motif, single-stranded-interacting
protein 1
gi|73586813|gb|AAI03187.1| RNA binding motif, single stranded interacting protein 1 [Bos
taurus]
gi|296490570|tpg|DAA32683.1| TPA: RNA-binding motif, single-stranded-interacting protein 1 [Bos
taurus]
Length = 403
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 59/103 (57%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA++ L +Q + K P+ NLY+S LP
Sbjct: 98 TTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPT-------NLYISNLPL 150
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G++I++RIL D+ T G ++ + E+
Sbjct: 151 SMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEK 193
Score = 38.9 bits (89), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 26/40 (65%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+ + NLY+ GLP + + Q+L L PYG+I++++ + D
Sbjct: 57 DQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILD 96
>gi|402888463|ref|XP_003907580.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 1
isoform 1 [Papio anubis]
gi|384944040|gb|AFI35625.1| RNA-binding motif, single-stranded-interacting protein 1 isoform c
[Macaca mulatta]
Length = 403
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 59/103 (57%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA++ L +Q + K P+ NLY+S LP
Sbjct: 98 TTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPT-------NLYISNLPL 150
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G++I++RIL D+ T G ++ + E+
Sbjct: 151 SMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEK 193
Score = 38.9 bits (89), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 26/40 (65%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+ + NLY+ GLP + + Q+L L PYG+I++++ + D
Sbjct: 57 DQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILD 96
>gi|384944038|gb|AFI35624.1| RNA-binding motif, single-stranded-interacting protein 1 isoform a
[Macaca mulatta]
Length = 406
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 59/103 (57%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA++ L +Q + K P+ NLY+S LP
Sbjct: 98 TTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPT-------NLYISNLPL 150
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G++I++RIL D+ T G ++ + E+
Sbjct: 151 SMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEK 193
Score = 38.9 bits (89), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 26/40 (65%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+ + NLY+ GLP + + Q+L L PYG+I++++ + D
Sbjct: 57 DQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILD 96
>gi|403297101|ref|XP_003939425.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 2
[Saimiri boliviensis boliviensis]
Length = 369
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA+ L +Q + K P+ NLY+S LP
Sbjct: 92 TTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQQEQDPT-------NLYISNLPL 144
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE + P+G++I++RIL D T G ++ + E+
Sbjct: 145 SMDEQELEGMLKPFGQVISTRILRDTSGTSRGVGFARMESTEK 187
>gi|4506447|ref|NP_002888.1| RNA-binding motif, single-stranded-interacting protein 1 isoform c
[Homo sapiens]
gi|332234023|ref|XP_003266207.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 1
isoform 2 [Nomascus leucogenys]
gi|332814558|ref|XP_515853.3| PREDICTED: RNA-binding motif, single-stranded-interacting protein 1
isoform 3 [Pan troglodytes]
gi|558529|dbj|BAA05841.1| SCR2 [Homo sapiens]
gi|15278081|gb|AAH12992.1| RNA binding motif, single stranded interacting protein 1 [Homo
sapiens]
gi|15278086|gb|AAH12993.1| RNA binding motif, single stranded interacting protein 1 [Homo
sapiens]
gi|410222060|gb|JAA08249.1| RNA binding motif, single stranded interacting protein 1 [Pan
troglodytes]
gi|410338641|gb|JAA38267.1| RNA binding motif, single stranded interacting protein 1 [Pan
troglodytes]
Length = 403
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 59/103 (57%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA++ L +Q + K P+ NLY+S LP
Sbjct: 98 TTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPT-------NLYISNLPL 150
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G++I++RIL D+ T G ++ + E+
Sbjct: 151 SMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEK 193
Score = 42.0 bits (97), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 26/40 (65%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+ + NLY+ GLP H + Q+L L PYG+I++++ + D
Sbjct: 57 DQLSKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILD 96
>gi|301761019|ref|XP_002916038.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein
2-like [Ailuropoda melanoleuca]
Length = 407
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
ST + GYGFV++ P A+KA+ L +Q + K P+ NLY+S LP
Sbjct: 92 STNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQQEQDPT-------NLYISNLPL 144
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE + P+G++I++RIL D T G ++ + E+
Sbjct: 145 SMDEQELEGMLKPFGQVISTRILRDTRGTSRGVGFARMESTEK 187
>gi|417400377|gb|JAA47138.1| Putative rna-binding protein elav/hu rrm superfamily [Desmodus
rotundus]
Length = 406
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 59/103 (57%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA++ L +Q + K P+ NLY+S LP
Sbjct: 98 TTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPT-------NLYISNLPL 150
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G++I++RIL D+ T G ++ + E+
Sbjct: 151 SMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEK 193
Score = 38.9 bits (89), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 26/40 (65%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+ + NLY+ GLP + + Q+L L PYG+I++++ + D
Sbjct: 57 DQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILD 96
>gi|354476559|ref|XP_003500492.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein
1-like isoform 3 [Cricetulus griseus]
Length = 356
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 59/103 (57%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA++ L +Q + K P+ NLY+S LP
Sbjct: 65 TTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPT-------NLYISNLPL 117
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G++I++R+L D+ T G ++ + E+
Sbjct: 118 SMDEQELENMLKPFGQVISTRVLRDSSGTSRGVGFARMESTEK 160
Score = 39.3 bits (90), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 26/40 (65%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+ + NLY+ GLP + + Q+L L PYG+I++++ + D
Sbjct: 24 DQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILD 63
>gi|194222257|ref|XP_001493156.2| PREDICTED: RNA-binding motif, single-stranded-interacting protein 1
[Equus caballus]
Length = 389
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 59/103 (57%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA++ L +Q + K P+ NLY+S LP
Sbjct: 65 TTNKCKGYGFVDFDSPAAAQKAVSALKANGVQAQMAKQQEQDPT-------NLYISNLPL 117
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G++I++RIL D+ T G ++ + E+
Sbjct: 118 SMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEK 160
Score = 39.3 bits (90), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 26/40 (65%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+ + NLY+ GLP + + Q+L L PYG+I++++ + D
Sbjct: 24 DQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILD 63
>gi|431914027|gb|ELK15289.1| RNA-binding motif, single-stranded-interacting protein 2 [Pteropus
alecto]
Length = 476
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA+ L +Q + K P+ NLY+S LP
Sbjct: 176 TTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQQEQDPT-------NLYISNLPL 228
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE + P+G++I++RIL D T G ++ + E+
Sbjct: 229 SMDEQELEGMLKPFGQVISTRILRDTSGTSRGVGFARMESTEK 271
>gi|344256389|gb|EGW12493.1| RNA-binding motif, single-stranded-interacting protein 2
[Cricetulus griseus]
Length = 421
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 57/103 (55%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA+ L +Q + K P+ NLY+S LP
Sbjct: 92 TTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQQEQDPT-------NLYISNLPL 144
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE + P+G++I++RIL D+ T G ++ + E+
Sbjct: 145 SMDEQELEGMLKPFGQVISTRILRDSSGTSRGVGFARMESTEK 187
Score = 35.8 bits (81), Expect = 6.2, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 30/63 (47%)
Query: 62 QNKTIKVSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATEN 121
+N T S + + NLY+ GL + Q+L L PYG+I++++ + D +
Sbjct: 37 RNSTPNSSSGSNGHDQLSKTNLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKC 96
Query: 122 GKY 124
Y
Sbjct: 97 KGY 99
>gi|195111486|ref|XP_002000309.1| GI10157 [Drosophila mojavensis]
gi|193916903|gb|EDW15770.1| GI10157 [Drosophila mojavensis]
Length = 356
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 49/84 (58%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T S YGFVNY A KA+N++NG ++ K +KVS ARPSS+ K N+YV LP
Sbjct: 68 TGASHCYGFVNYTNSISANKALNSMNGCPVRGKKLKVSMARPSSDDTKKTNIYVGNLPLS 127
Query: 92 MSQQELESLFSPYGRIITSRILCD 115
++ +F +G+I+ +L D
Sbjct: 128 YDAAQVREIFERFGKIVDLNLLKD 151
>gi|356514396|ref|XP_003525892.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 630
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 35/95 (36%), Positives = 53/95 (55%), Gaps = 2/95 (2%)
Query: 30 ISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYA--RPSSESIKGANLYVSG 87
++T QSLGYG+VN+ DA KAI+ LN L KTI++ Y+ PS+ AN+++
Sbjct: 59 VATQQSLGYGYVNFSNARDAAKAIDVLNFTPLNGKTIRIMYSIRDPSARKSGAANVFIKN 118
Query: 88 LPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
L K + + L FS +G I++ +I D G
Sbjct: 119 LDKAIDHKALFDTFSAFGNILSCKIATDASGQSKG 153
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 32/101 (31%), Positives = 45/101 (44%), Gaps = 18/101 (17%)
Query: 33 AQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE---------------- 76
+S G+GFVN+ EDA KA+ LNG K V A+ SE
Sbjct: 240 GKSKGFGFVNFANVEDAAKAVEALNGKNFDGKEWYVGKAQKKSERELELKERNEQSTKET 299
Query: 77 --SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
G NLY+ L + +EL LFS +G I + +++ D
Sbjct: 300 VDKYHGTNLYIKNLDDSVGDEELRELFSEFGTITSCKVMRD 340
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 52/91 (57%), Gaps = 6/91 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKV-----SYARPSSES-IKGANLY 84
++ QS G+GFV + E A+ AI+ LNG+ + +K + V R S+ S K N+Y
Sbjct: 147 ASGQSKGHGFVQFESEESAQNAIDKLNGMLINDKQVYVGPFQRKQDRESALSGTKFNNVY 206
Query: 85 VSGLPKHMSQQELESLFSPYGRIITSRILCD 115
V L + ++ +L+S+F YG I ++ ++ D
Sbjct: 207 VKNLFEATTEADLKSIFGEYGAITSAVVMRD 237
>gi|344245476|gb|EGW01580.1| RNA-binding motif, single-stranded-interacting protein 1
[Cricetulus griseus]
Length = 419
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 34/103 (33%), Positives = 59/103 (57%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA++ L +Q + K P+ NLY+S LP
Sbjct: 98 TTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPT-------NLYISNLPL 150
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G++I++R+L D+ T G ++ + E+
Sbjct: 151 SMDEQELENMLKPFGQVISTRVLRDSSGTSRGVGFARMESTEK 193
Score = 38.5 bits (88), Expect = 0.97, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 28/49 (57%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKY 124
+ + NLY+ GLP + + Q+L L PYG+I++++ + D + Y
Sbjct: 57 DQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGY 105
>gi|354476557|ref|XP_003500491.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein
1-like isoform 2 [Cricetulus griseus]
Length = 386
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 59/103 (57%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA++ L +Q + K P+ NLY+S LP
Sbjct: 65 TTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPT-------NLYISNLPL 117
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G++I++R+L D+ T G ++ + E+
Sbjct: 118 SMDEQELENMLKPFGQVISTRVLRDSSGTSRGVGFARMESTEK 160
Score = 38.9 bits (89), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 26/40 (65%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+ + NLY+ GLP + + Q+L L PYG+I++++ + D
Sbjct: 24 DQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILD 63
>gi|350584149|ref|XP_003126323.3| PREDICTED: RNA-binding motif, single-stranded-interacting protein 2
isoform 1, partial [Sus scrofa]
Length = 385
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA+ L +Q + K P+ NLY+S LP
Sbjct: 70 TTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQQEQDPT-------NLYISNLPL 122
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE + P+G++I++RIL D T G ++ + E+
Sbjct: 123 SMDEQELEGMLKPFGQVISTRILRDTSGTSRGVGFARMESTEK 165
>gi|149022093|gb|EDL78987.1| rCG26906, isoform CRA_b [Rattus norvegicus]
gi|149022094|gb|EDL78988.1| rCG26906, isoform CRA_b [Rattus norvegicus]
gi|149022097|gb|EDL78991.1| rCG26906, isoform CRA_b [Rattus norvegicus]
Length = 370
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 59/103 (57%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA++ L +Q + K P+ NLY+S LP
Sbjct: 65 ATNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPT-------NLYISNLPL 117
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G++I++R+L D+ T G ++ + E+
Sbjct: 118 SMDEQELENMLKPFGQVISTRVLRDSSGTSRGVGFARMESTEK 160
Score = 39.3 bits (90), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYY 125
+ + NLY+ GLP + + Q+L L PYG+I++++ + D AT K Y
Sbjct: 24 DQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDK-ATNKCKGY 72
>gi|296212042|ref|XP_002752659.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 2
[Callithrix jacchus]
Length = 407
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA+ L +Q + K P+ NLY+S LP
Sbjct: 92 TTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQQEQDPT-------NLYISNLPL 144
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE + P+G++I++RIL D T G ++ + E+
Sbjct: 145 SMDEQELEGMLKPFGQVISTRILRDTSGTSRGVGFARMESTEK 187
>gi|395835220|ref|XP_003790580.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 2
[Otolemur garnettii]
Length = 407
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA+ L +Q + K P+ NLY+S LP
Sbjct: 92 TTNKCKGYGFVDFDSPSAAQKAVTALKASGIQAQMAKQQEQDPT-------NLYISNLPL 144
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE + P+G++I++RIL D T G ++ + E+
Sbjct: 145 SMDEQELEGMLKPFGQVISTRILRDTSGTSRGVGFARMESTEK 187
>gi|441628930|ref|XP_003275701.2| PREDICTED: ELAV-like protein 3 [Nomascus leucogenys]
Length = 364
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 42/60 (70%), Gaps = 4/60 (6%)
Query: 22 DAEICVFLIS--TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKV--SYARPSSES 77
D E C + T QSLGYGFVNY P DA+KAINTLNGL+LQ KTIKV S++ P + +
Sbjct: 180 DIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVGASFSNPPNST 239
>gi|149022096|gb|EDL78990.1| rCG26906, isoform CRA_d [Rattus norvegicus]
Length = 388
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 56/97 (57%), Gaps = 7/97 (7%)
Query: 37 GYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQQE 96
GYGFV++ P A+KA++ L +Q + K P+ NLY+S LP M +QE
Sbjct: 89 GYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPT-------NLYISNLPLSMDEQE 141
Query: 97 LESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
LE++ P+G++I++R+L D+ T G ++ + E+
Sbjct: 142 LENMLKPFGQVISTRVLRDSSGTSRGVGFARMESTEK 178
Score = 39.3 bits (90), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYY 125
+ + NLY+ GLP + + Q+L L PYG+I++++ + D AT K Y
Sbjct: 42 DQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDK-ATNKCKGY 90
>gi|440899480|gb|ELR50777.1| RNA-binding motif, single-stranded-interacting protein 2 [Bos
grunniens mutus]
Length = 407
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA+ L +Q + K P+ NLY+S LP
Sbjct: 92 TTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQQEQDPT-------NLYISNLPL 144
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE + P+G++I++RIL D T G ++ + E+
Sbjct: 145 SMDEQELEGMLKPFGQVISTRILRDTSGTSRGVGFARMESTEK 187
>gi|426224935|ref|XP_004006624.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 2
[Ovis aries]
Length = 407
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA+ L +Q + K P+ NLY+S LP
Sbjct: 92 TTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQQEQDPT-------NLYISNLPL 144
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE + P+G++I++RIL D T G ++ + E+
Sbjct: 145 SMDEQELEGMLKPFGQVISTRILRDTSGTSRGVGFARMESTEK 187
>gi|77735679|ref|NP_001029537.1| RNA-binding motif, single-stranded-interacting protein 2 [Bos
taurus]
gi|122143024|sp|Q3ZC34.1|RBMS2_BOVIN RecName: Full=RNA-binding motif, single-stranded-interacting
protein 2
gi|73587355|gb|AAI02936.1| RNA binding motif, single stranded interacting protein 2 [Bos
taurus]
gi|296487645|tpg|DAA29758.1| TPA: RNA-binding motif, single-stranded-interacting protein 2 [Bos
taurus]
Length = 407
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA+ L +Q + K P+ NLY+S LP
Sbjct: 92 TTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQQEQDPT-------NLYISNLPL 144
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE + P+G++I++RIL D T G ++ + E+
Sbjct: 145 SMDEQELEGMLKPFGQVISTRILRDTSGTSRGVGFARMESTEK 187
>gi|402886489|ref|XP_003906661.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 2
[Papio anubis]
Length = 377
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA+ L +Q + K P+ NLY+S LP
Sbjct: 62 TTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQQEQDPT-------NLYISNLPL 114
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE + P+G++I++RIL D T G ++ + E+
Sbjct: 115 SMDEQELEGMLKPFGQVISTRILRDTSGTSRGVGFARMESTEK 157
>gi|29841435|gb|AAP06467.1| similar to GenBank Accession Number AJ298278 poly(A) binding
protein in Rattus norvegicus [Schistosoma japonicum]
Length = 307
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 62/103 (60%), Gaps = 7/103 (6%)
Query: 23 AEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKG 80
A +C L +T QSLGYG+VN+ P+ AE+A+ LN L + I++ +++ PS
Sbjct: 42 ARVCRDL-ATRQSLGYGYVNFEDPKHAEQALEVLNYEPLMGRPIRIMWSQRDPSLRKSGK 100
Query: 81 ANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGK 123
N+++ L K + Q+EL FS +GRI++ +I+ D ENG+
Sbjct: 101 GNIFIKNLDKSIEQKELYDTFSFFGRILSCKIVMD----ENGQ 139
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 54/102 (52%), Gaps = 6/102 (5%)
Query: 27 VFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE------SIKG 80
+ + QS GYGFV++ + E AE+AI +N + ++++ + V P +E +K
Sbjct: 132 IVMDENGQSKGYGFVHFEKEECAERAIEKINNMIIRDRVVYVGKFIPKTERKSQARKVKF 191
Query: 81 ANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
NLYV P ++L+ +FS +G I ++ ++ DN G
Sbjct: 192 NNLYVKNFPPETDNEKLKEMFSEFGEIKSACVMKDNEGKSKG 233
Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 29/51 (56%)
Query: 26 CVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
CV + +S G+GFV Y P+ AE A+ T++G ++ + + + A+ E
Sbjct: 222 CVMKDNEGKSKGFGFVCYLDPDHAENAVRTMHGKEIEGRVLYCARAQRKEE 272
>gi|4506449|ref|NP_002889.1| RNA-binding motif, single-stranded-interacting protein 2 [Homo
sapiens]
gi|55976301|sp|Q15434.1|RBMS2_HUMAN RecName: Full=RNA-binding motif, single-stranded-interacting
protein 2; AltName: Full=Suppressor of CDC2 with
RNA-binding motif 3
gi|558530|dbj|BAA05842.1| SCR3 [Homo sapiens]
gi|20379908|gb|AAH27863.1| RNA binding motif, single stranded interacting protein 2 [Homo
sapiens]
gi|49119638|gb|AAH72679.1| RNA binding motif, single stranded interacting protein 2 [Homo
sapiens]
gi|119617353|gb|EAW96947.1| RNA binding motif, single stranded interacting protein 2, isoform
CRA_a [Homo sapiens]
Length = 407
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA+ L +Q + K P+ NLY+S LP
Sbjct: 92 TTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQQEQDPT-------NLYISNLPL 144
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE + P+G++I++RIL D T G ++ + E+
Sbjct: 145 SMDEQELEGMLKPFGQVISTRILRDTSGTSRGVGFARMESTEK 187
>gi|354476555|ref|XP_003500490.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein
1-like isoform 1 [Cricetulus griseus]
Length = 403
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 59/103 (57%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA++ L +Q + K P+ NLY+S LP
Sbjct: 98 TTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPT-------NLYISNLPL 150
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G++I++R+L D+ T G ++ + E+
Sbjct: 151 SMDEQELENMLKPFGQVISTRVLRDSSGTSRGVGFARMESTEK 193
Score = 38.9 bits (89), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 26/40 (65%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+ + NLY+ GLP + + Q+L L PYG+I++++ + D
Sbjct: 57 DQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILD 96
>gi|297692191|ref|XP_002823450.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 2
[Pongo abelii]
Length = 377
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA+ L +Q + K P+ NLY+S LP
Sbjct: 62 TTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQQEQDPT-------NLYISNLPL 114
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE + P+G++I++RIL D T G ++ + E+
Sbjct: 115 SMDEQELEGMLKPFGQVISTRILRDTSGTSRGVGFARMESTEK 157
>gi|326503608|dbj|BAJ86310.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 746
Score = 67.8 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 33/95 (34%), Positives = 54/95 (56%), Gaps = 2/95 (2%)
Query: 30 ISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSG 87
+++ +SLGY +VNY P DA +A+ LN L NK I+V Y+ PSS AN+++
Sbjct: 157 VNSRRSLGYAYVNYSNPMDAARAMEALNFAPLNNKPIRVMYSNRDPSSRRSGSANIFIKN 216
Query: 88 LPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
L K + + L FS +G I++ ++ D++ G
Sbjct: 217 LDKTIDNKTLHDTFSAFGAILSCKVAMDDIGQSKG 251
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 18/118 (15%)
Query: 33 AQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE---------------- 76
+S +GFVN+ P+DA +A+ LNG ++ +K V A+ SE
Sbjct: 338 GKSRCFGFVNFESPDDAARAVEELNGKKINDKEWYVGRAQKKSEREMDLKRRFEQSMKDA 397
Query: 77 --SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRE 132
+G NLY+ L ++ +L LFS +G+I + +I+ D G + RE
Sbjct: 398 ADKYQGQNLYLKNLDDGITDDQLRELFSNFGKITSCKIMRDQNGVSKGSGFVSFSTRE 455
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 51/87 (58%), Gaps = 6/87 (6%)
Query: 33 AQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVS-YARP-----SSESIKGANLYVS 86
QS G+GFV Y + E A+ A+ +LNG+ + +K + V + R SS+ K N++V
Sbjct: 247 GQSKGFGFVQYEKEESAQSAMKSLNGMLINDKPVYVGPFLRKQERDNSSDKAKFNNVFVK 306
Query: 87 GLPKHMSQQELESLFSPYGRIITSRIL 113
L + ++++L +FS YG I ++ ++
Sbjct: 307 NLSESTTKEDLIKVFSEYGTITSAVVM 333
>gi|114644234|ref|XP_001168729.1| PREDICTED: uncharacterized protein LOC467094 [Pan troglodytes]
gi|397509065|ref|XP_003824957.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 2
[Pan paniscus]
gi|410227310|gb|JAA10874.1| RNA binding motif, single stranded interacting protein 2 [Pan
troglodytes]
gi|410259784|gb|JAA17858.1| RNA binding motif, single stranded interacting protein 2 [Pan
troglodytes]
gi|410294868|gb|JAA26034.1| RNA binding motif, single stranded interacting protein 2 [Pan
troglodytes]
gi|410333873|gb|JAA35883.1| RNA binding motif, single stranded interacting protein 2 [Pan
troglodytes]
Length = 407
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA+ L +Q + K P+ NLY+S LP
Sbjct: 92 TTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQQEQDPT-------NLYISNLPL 144
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE + P+G++I++RIL D T G ++ + E+
Sbjct: 145 SMDEQELEGMLKPFGQVISTRILRDTSGTSRGVGFARMESTEK 187
>gi|332207533|ref|XP_003252851.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 2
[Nomascus leucogenys]
Length = 407
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA+ L +Q + K P+ NLY+S LP
Sbjct: 92 TTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQQEQDPT-------NLYISNLPL 144
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE + P+G++I++RIL D T G ++ + E+
Sbjct: 145 SMDEQELEGMLKPFGQVISTRILRDTSGTSRGVGFARMESTEK 187
>gi|388453925|ref|NP_001253318.1| RNA-binding motif, single-stranded-interacting protein 2 [Macaca
mulatta]
gi|355564370|gb|EHH20870.1| Suppressor of CDC2 with RNA-binding motif 3 [Macaca mulatta]
gi|355786224|gb|EHH66407.1| Suppressor of CDC2 with RNA-binding motif 3 [Macaca fascicularis]
gi|384944470|gb|AFI35840.1| RNA-binding motif, single-stranded-interacting protein 2 [Macaca
mulatta]
Length = 407
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA+ L +Q + K P+ NLY+S LP
Sbjct: 92 TTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQQEQDPT-------NLYISNLPL 144
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE + P+G++I++RIL D T G ++ + E+
Sbjct: 145 SMDEQELEGMLKPFGQVISTRILRDTSGTSRGVGFARMESTEK 187
>gi|58865940|ref|NP_001012184.1| RNA-binding motif, single-stranded-interacting protein 1 [Rattus
norvegicus]
gi|81909957|sp|Q5PQP1.1|RBMS1_RAT RecName: Full=RNA-binding motif, single-stranded-interacting
protein 1
gi|56269819|gb|AAH87094.1| RNA binding motif, single stranded interacting protein 1 [Rattus
norvegicus]
gi|149022095|gb|EDL78989.1| rCG26906, isoform CRA_c [Rattus norvegicus]
Length = 403
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 59/103 (57%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA++ L +Q + K P+ NLY+S LP
Sbjct: 98 ATNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPT-------NLYISNLPL 150
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G++I++R+L D+ T G ++ + E+
Sbjct: 151 SMDEQELENMLKPFGQVISTRVLRDSSGTSRGVGFARMESTEK 193
Score = 39.3 bits (90), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYY 125
+ + NLY+ GLP + + Q+L L PYG+I++++ + D AT K Y
Sbjct: 57 DQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDK-ATNKCKGY 105
>gi|357164563|ref|XP_003580095.1| PREDICTED: polyadenylate-binding protein 2-like [Brachypodium
distachyon]
Length = 661
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 55/95 (57%), Gaps = 2/95 (2%)
Query: 30 ISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSG 87
+++ +SLGY +VN+ P DA +A+ LN + L NK I+V Y+ PSS AN+++
Sbjct: 72 VNSRRSLGYAYVNFSNPMDAARALEMLNFVPLNNKPIRVMYSNRDPSSRRSGSANIFIKN 131
Query: 88 LPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
L K + + L FS +G I++ ++ D++ G
Sbjct: 132 LDKTIDNKTLHDTFSAFGAILSCKVATDDMGQSKG 166
Score = 55.8 bits (133), Expect = 6e-06, Method: Composition-based stats.
Identities = 32/124 (25%), Positives = 56/124 (45%), Gaps = 18/124 (14%)
Query: 27 VFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE---------- 76
V + + +S +GF+N+ P+DA +A+ LNG ++ +K A+ SE
Sbjct: 247 VMVGTDGKSRCFGFINFESPDDAVRAVEELNGKKINDKEWYCGRAQKKSEREMDLKRRFE 306
Query: 77 --------SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGL 128
+G NLY+ L +S +L LFS +G+I + +++ D G +
Sbjct: 307 QSMKDAADKYQGQNLYLKNLDDGISDDQLRELFSTFGKITSCKVMRDQNGVSKGSGFVAF 366
Query: 129 GGRE 132
RE
Sbjct: 367 STRE 370
Score = 48.5 bits (114), Expect = 9e-04, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 50/87 (57%), Gaps = 6/87 (6%)
Query: 33 AQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVS-YARP-----SSESIKGANLYVS 86
QS G+GFV Y + E A+ A+ +LNG+ + +K + V + R S + + N++V
Sbjct: 162 GQSKGFGFVQYEKEEFAQSAMKSLNGMLINDKPVYVGPFLRKQERDNSFDKARFNNVFVK 221
Query: 87 GLPKHMSQQELESLFSPYGRIITSRIL 113
L + ++++L +FS YG I ++ ++
Sbjct: 222 NLSESTTKEDLVKIFSEYGNITSAVVM 248
>gi|291389457|ref|XP_002711129.1| PREDICTED: RNA binding motif, single stranded interacting protein 2
isoform 2 [Oryctolagus cuniculus]
Length = 381
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA+ L +Q + K P+ NLY+S LP
Sbjct: 92 TTNKCKGYGFVDFDSPSAAQKAVTALRASGVQAQMAKQQEQDPT-------NLYISNLPL 144
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE + P+G++I++RIL D T G ++ + E+
Sbjct: 145 SMDEQELEGMLKPFGQVISTRILRDTSGTSRGVGFARMESTEK 187
>gi|149022092|gb|EDL78986.1| rCG26906, isoform CRA_a [Rattus norvegicus]
Length = 401
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 59/103 (57%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA++ L +Q + K P+ NLY+S LP
Sbjct: 96 ATNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPT-------NLYISNLPL 148
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G++I++R+L D+ T G ++ + E+
Sbjct: 149 SMDEQELENMLKPFGQVISTRVLRDSSGTSRGVGFARMESTEK 191
Score = 39.3 bits (90), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYY 125
+ + NLY+ GLP + + Q+L L PYG+I++++ + D AT K Y
Sbjct: 55 DQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDK-ATNKCKGY 103
>gi|225458678|ref|XP_002284923.1| PREDICTED: polyadenylate-binding protein 2 [Vitis vinifera]
gi|147773643|emb|CAN76464.1| hypothetical protein VITISV_017035 [Vitis vinifera]
Length = 640
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 2/95 (2%)
Query: 30 ISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSG 87
+ST +SLGYG+VNY P+DA +A++ LN L K I++ Y+ PS AN+++
Sbjct: 53 LSTRRSLGYGYVNYSNPQDAARALDLLNFTPLNGKPIRIMYSHRDPSIRKSGTANIFIKN 112
Query: 88 LPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
L K + + L FS +G I++ +I D G
Sbjct: 113 LDKSIDNKALHDTFSAFGNILSCKIATDPSGQSKG 147
Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 49/88 (55%), Gaps = 7/88 (7%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE------SIKGANLYV 85
+ QS GYGFV + E A+ AI+ LNG+ + +K + V E K N+YV
Sbjct: 142 SGQSKGYGFVQFDNEESAQNAIDKLNGMLINDKQVYVGQFLRKQERETALNKTKFNNVYV 201
Query: 86 SGLPKHMSQQELESLFSPYGRIITSRIL 113
L + ++++L+++F +G IITS ++
Sbjct: 202 KNLSESTTEEDLKNIFGEFG-IITSVVV 228
Score = 38.1 bits (87), Expect = 1.3, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 49/122 (40%), Gaps = 18/122 (14%)
Query: 33 AQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE---------------- 76
+S +GFVN+ +DA +A+ LNG + K V A+ E
Sbjct: 234 GKSKCFGFVNFENADDAAEAVEALNGKKFDEKEWYVGKAQKKYERELELKGRFEQSMKEV 293
Query: 77 --SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERL 134
+G NLY+ L + +L+ LFS +G I + +++ D G + E
Sbjct: 294 VDKFQGVNLYIKNLDDSIGDDKLKELFSEFGTITSCKVMRDPSGISRGSGFVAFSTSEEA 353
Query: 135 RR 136
R
Sbjct: 354 SR 355
>gi|426373094|ref|XP_004053447.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 2
[Gorilla gorilla gorilla]
Length = 355
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 51/92 (55%), Gaps = 7/92 (7%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA+ L +Q + K P+ NLY+S LP
Sbjct: 92 TTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQQEQDPT-------NLYISNLPL 144
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENG 122
M +QELE + P+G++I++RIL D T G
Sbjct: 145 SMDEQELEGMLKPFGQVISTRILRDTSGTSRG 176
>gi|354488135|ref|XP_003506226.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 2
[Cricetulus griseus]
Length = 381
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 57/103 (55%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA+ L +Q + K P+ NLY+S LP
Sbjct: 92 TTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQQEQDPT-------NLYISNLPL 144
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE + P+G++I++RIL D+ T G ++ + E+
Sbjct: 145 SMDEQELEGMLKPFGQVISTRILRDSSGTSRGVGFARMESTEK 187
>gi|442630336|ref|NP_001261439.1| alan shepard, isoform H [Drosophila melanogaster]
gi|440215327|gb|AGB94134.1| alan shepard, isoform H [Drosophila melanogaster]
Length = 371
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 61/109 (55%), Gaps = 4/109 (3%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYA---RPSSESIKGANLYVSG 87
+T + GYGFV++ +P AE A+ L G +Q + KV RP+ E NLY++
Sbjct: 57 TTNKCKGYGFVDFEQPAFAECAVKGLQGKGVQAQMAKVGIWVLHRPAIEQ-DPTNLYIAN 115
Query: 88 LPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLRR 136
LP H + +LE++ S YG+++++RIL D G ++ + RE+ +
Sbjct: 116 LPPHFKETDLEAMLSKYGQVVSTRILRDQQMNSKGVGFARMESREKCEQ 164
>gi|302142286|emb|CBI19489.3| unnamed protein product [Vitis vinifera]
Length = 621
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 2/95 (2%)
Query: 30 ISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSG 87
+ST +SLGYG+VNY P+DA +A++ LN L K I++ Y+ PS AN+++
Sbjct: 53 LSTRRSLGYGYVNYSNPQDAARALDLLNFTPLNGKPIRIMYSHRDPSIRKSGTANIFIKN 112
Query: 88 LPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
L K + + L FS +G I++ +I D G
Sbjct: 113 LDKSIDNKALHDTFSAFGNILSCKIATDPSGQSKG 147
Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 49/88 (55%), Gaps = 7/88 (7%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE------SIKGANLYV 85
+ QS GYGFV + E A+ AI+ LNG+ + +K + V E K N+YV
Sbjct: 142 SGQSKGYGFVQFDNEESAQNAIDKLNGMLINDKQVYVGQFLRKQERETALNKTKFNNVYV 201
Query: 86 SGLPKHMSQQELESLFSPYGRIITSRIL 113
L + ++++L+++F +G IITS ++
Sbjct: 202 KNLSESTTEEDLKNIFGEFG-IITSVVV 228
Score = 38.1 bits (87), Expect = 1.3, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 49/122 (40%), Gaps = 18/122 (14%)
Query: 33 AQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE---------------- 76
+S +GFVN+ +DA +A+ LNG + K V A+ E
Sbjct: 234 GKSKCFGFVNFENADDAAEAVEALNGKKFDEKEWYVGKAQKKYERELELKGRFEQSMKEV 293
Query: 77 --SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERL 134
+G NLY+ L + +L+ LFS +G I + +++ D G + E
Sbjct: 294 VDKFQGVNLYIKNLDDSIGDDKLKELFSEFGTITSCKVMRDPSGISRGSGFVAFSTSEEA 353
Query: 135 RR 136
R
Sbjct: 354 SR 355
>gi|291389455|ref|XP_002711128.1| PREDICTED: RNA binding motif, single stranded interacting protein 2
isoform 1 [Oryctolagus cuniculus]
Length = 407
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA+ L +Q + K P+ NLY+S LP
Sbjct: 92 TTNKCKGYGFVDFDSPSAAQKAVTALRASGVQAQMAKQQEQDPT-------NLYISNLPL 144
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE + P+G++I++RIL D T G ++ + E+
Sbjct: 145 SMDEQELEGMLKPFGQVISTRILRDTSGTSRGVGFARMESTEK 187
>gi|348580922|ref|XP_003476227.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 2
isoform 2 [Cavia porcellus]
Length = 381
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA+ L +Q + K P+ NLY+S LP
Sbjct: 92 TTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQQEQDPT-------NLYISNLPL 144
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE + P+G++I++RIL D T G ++ + E+
Sbjct: 145 SMDEQELEGMLKPFGQVISTRILRDTNGTSRGVGFARMESTEK 187
>gi|330794853|ref|XP_003285491.1| hypothetical protein DICPUDRAFT_149370 [Dictyostelium purpureum]
gi|325084582|gb|EGC38007.1| hypothetical protein DICPUDRAFT_149370 [Dictyostelium purpureum]
Length = 352
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 73/139 (52%), Gaps = 25/139 (17%)
Query: 2 VYQTLLNKLFTYEKVHLGFS---DAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTL 56
++ + L +T E + + FS + + C ++ +T S G+GFV + A+ AIN++
Sbjct: 19 LFVSFLPSTYTNESLKVLFSPFGEIDSCKVMVDLNTGLSRGFGFVKFKDVASAQYAINSM 78
Query: 57 NGLRLQNKTIKVSYA--------------------RPSSESIKGANLYVSGLPKHMSQQE 96
NG+++ NKT+ V +A ++ +I N+++ GLP + +
Sbjct: 79 NGMKVDNKTLLVRFANSEPIQQQQQQQQQQQQSVDEANTNAIASNNVFIKGLPTEYTMDQ 138
Query: 97 LESLFSPYGRIITSRILCD 115
L++LFSP+G I+ S+IL D
Sbjct: 139 LKALFSPHGEILESKILTD 157
Score = 35.8 bits (81), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 37 GYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR 72
GYGFV D+ AIN++NG+++ KTI VS+ +
Sbjct: 317 GYGFVRMLSLPDSYAAINSINGIQVGGKTISVSFKK 352
>gi|442630338|ref|NP_729057.3| alan shepard, isoform I [Drosophila melanogaster]
gi|440215328|gb|AAF50792.4| alan shepard, isoform I [Drosophila melanogaster]
Length = 377
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 61/109 (55%), Gaps = 4/109 (3%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYA---RPSSESIKGANLYVSG 87
+T + GYGFV++ +P AE A+ L G +Q + KV RP+ E NLY++
Sbjct: 57 TTNKCKGYGFVDFEQPAFAECAVKGLQGKGVQAQMAKVGIWVLHRPAIEQ-DPTNLYIAN 115
Query: 88 LPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLRR 136
LP H + +LE++ S YG+++++RIL D G ++ + RE+ +
Sbjct: 116 LPPHFKETDLEAMLSKYGQVVSTRILRDQQMNSKGVGFARMESREKCEQ 164
>gi|413954516|gb|AFW87165.1| hypothetical protein ZEAMMB73_979278 [Zea mays]
gi|414865260|tpg|DAA43817.1| TPA: hypothetical protein ZEAMMB73_808082 [Zea mays]
Length = 643
Score = 67.0 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 33/86 (38%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVS-YARPSSESIKGANLYVSGLP 89
S QS GYGFV Y E AE AIN LNG+ N+ + V + R +K N+Y+ LP
Sbjct: 158 SAGQSKGYGFVQYETEESAEAAINGLNGMLANNRKMFVGLHMRRRDREVKFTNVYIKNLP 217
Query: 90 KHMSQQELESLFSPYGRIITSRILCD 115
S+ +L F+P+G I ++ ++ D
Sbjct: 218 TEFSEDDLRQEFAPFGEITSAVVMRD 243
Score = 55.8 bits (133), Expect = 5e-06, Method: Composition-based stats.
Identities = 30/95 (31%), Positives = 52/95 (54%), Gaps = 2/95 (2%)
Query: 30 ISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSG 87
I + SLGYG+VN++ ++A +A+ LN L K I+V ++ PS ANL+V
Sbjct: 70 ILSGVSLGYGYVNFYSRQEATRALEALNFTPLIGKYIRVMFSNRDPSLRKSGRANLFVKN 129
Query: 88 LPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
L ++ + L +FS +G I++ ++ D+ G
Sbjct: 130 LEPNIDSKNLYEIFSSFGAILSCKVATDSAGQSKG 164
Score = 44.7 bits (104), Expect = 0.012, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 51/117 (43%), Gaps = 18/117 (15%)
Query: 38 YGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE------------------SIK 79
+GFVN+ +PE A +A+ NG + +KT+ V A+ E
Sbjct: 251 FGFVNFKKPEFAIEAVEKANGKAIGDKTLYVGRAQKKEERKAELKTRFGRGRDNKVDKPN 310
Query: 80 GANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLRR 136
G NLY+ + ++ + L+ LF +G++ + +++ D G + E +R
Sbjct: 311 GINLYLKNIDDGINDEGLKKLFEEFGQVASCKVMVDARGRSKGSGFVSFATAEAGQR 367
>gi|356564176|ref|XP_003550332.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 654
Score = 67.0 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 55/95 (57%), Gaps = 2/95 (2%)
Query: 30 ISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSG 87
++T +SLGYG+VN+ P+DA +A++ LN L N++I++ Y+ PS AN+++
Sbjct: 70 LTTRRSLGYGYVNFSNPQDAARALDVLNFTPLNNRSIRIMYSHRDPSLRKSGTANIFIKN 129
Query: 88 LPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
L K + + L FS +G I++ +I D G
Sbjct: 130 LDKAIDHKALHDTFSSFGLILSCKIATDASGLSKG 164
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 45/157 (28%), Positives = 72/157 (45%), Gaps = 22/157 (14%)
Query: 2 VYQTLLNKLFTYEKVHLGFSD-AEICVFLI---STAQSLGYGFVNYHRPEDAEKAINTLN 57
VY L++ T E++ + F + I LI + +S +GFVN+ P+DA KA+ LN
Sbjct: 216 VYVKNLSESTTDEELMINFGEYGTITSALIMRDADGKSRCFGFVNFENPDDAAKAVEGLN 275
Query: 58 GLRLQNKTIKVSYARPSSE-----------SIK-------GANLYVSGLPKHMSQQELES 99
G + +K V A+ SE SIK G NLY+ L +S ++L+
Sbjct: 276 GKKFDDKEWYVGKAQKKSEREQELKGRFEQSIKEAADKYPGLNLYLKNLDDTISDEKLKE 335
Query: 100 LFSPYGRIITSRILCDNLATENGKYYSGLGGRERLRR 136
+F+ YG I + +++ D G + E R
Sbjct: 336 MFADYGTITSCKVMRDPTGISRGSGFVAFSTPEEATR 372
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 6/91 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY-----ARPSSES-IKGANLY 84
++ S GYGFV + E A+ AI+ LNG+ + +K + V + R ++ S K N+Y
Sbjct: 158 ASGLSKGYGFVQFDNEEAAQNAIDKLNGMLINDKQVYVGHFLRKQDRENALSKTKFNNVY 217
Query: 85 VSGLPKHMSQQELESLFSPYGRIITSRILCD 115
V L + + +EL F YG I ++ I+ D
Sbjct: 218 VKNLSESTTDEELMINFGEYGTITSALIMRD 248
>gi|355715849|gb|AES05422.1| RNA binding motif, single stranded interacting protein 2 [Mustela
putorius furo]
Length = 356
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
ST + GYGFV++ P A+KA+ L +Q + K P+ NLY+S LP
Sbjct: 70 STNKCKGYGFVDFDSPSAAQKAVAALKASGVQAQMAKQQEQDPT-------NLYISNLPL 122
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE + P+G++I++RIL D T G ++ + E+
Sbjct: 123 SMDEQELEGMLKPFGQVISTRILRDTSGTSRGVGFARMESTEK 165
>gi|392342135|ref|XP_002727189.2| PREDICTED: RNA-binding motif, single-stranded-interacting protein
3-like [Rattus norvegicus]
Length = 430
Score = 67.0 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T Q GYGFV++ P A+KA+ +L +Q + K P+ NLY+S LP
Sbjct: 92 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPI 144
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G +I++RIL D G ++ + E+
Sbjct: 145 SMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEK 187
Score = 39.3 bits (90), Expect = 0.57, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
E + NLY+ GLP + Q+L L PYG+I++++ + D
Sbjct: 51 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILD 90
>gi|449445890|ref|XP_004140705.1| PREDICTED: polyadenylate-binding protein 2-like [Cucumis sativus]
Length = 654
Score = 67.0 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 53/95 (55%), Gaps = 2/95 (2%)
Query: 30 ISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSG 87
++T +SLGYG+VNY P+DA +A++ LN L K I+V Y+ PS N+++
Sbjct: 64 LTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRVMYSHRDPSIRKSGAGNIFIKN 123
Query: 88 LPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
L K + + L FS +G I++ ++ D+ G
Sbjct: 124 LDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKG 158
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 38/136 (27%), Positives = 66/136 (48%), Gaps = 22/136 (16%)
Query: 2 VYQTLLNKLFTYEKVHLGFSD----AEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLN 57
V+ L++ T E ++ FS+ I V + +S +GFVN+ +DA +A++TLN
Sbjct: 210 VFVKNLSETTTEEDLNKAFSEFGTLTSIVVMRDADGKSRCFGFVNFENADDAARAVDTLN 269
Query: 58 GLRLQNKTIKVSYARPSSE------------------SIKGANLYVSGLPKHMSQQELES 99
G + +K V A+ SE +GANLY+ L + +L+
Sbjct: 270 GKLVDDKEWYVGKAQKKSEREVELKHRFEQTMKEAADKYQGANLYIKNLDDSIGDDKLKE 329
Query: 100 LFSPYGRIITSRILCD 115
LF+P+G I + +++ D
Sbjct: 330 LFAPFGTITSCKVMRD 345
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 36/119 (30%), Positives = 59/119 (49%), Gaps = 10/119 (8%)
Query: 7 LNKLFTYEKVHLGFSD----AEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQ 62
L+K ++ +H FS V L S+ QS GYGFV + E A KAI LNG+ L
Sbjct: 124 LDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEESALKAIEKLNGMLLN 183
Query: 63 NKTIKVS-YARPSS-----ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+K + V + R + K N++V L + ++++L FS +G + + ++ D
Sbjct: 184 DKQVYVGPFLRKQERDGVVDKSKFNNVFVKNLSETTTEEDLNKAFSEFGTLTSIVVMRD 242
>gi|351703611|gb|EHB06530.1| RNA-binding motif, single-stranded-interacting protein 2
[Heterocephalus glaber]
Length = 407
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA+ L +Q + K P+ NLY+S LP
Sbjct: 92 TTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQQEQDPT-------NLYISNLPL 144
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE + P+G++I++RIL D T G ++ + E+
Sbjct: 145 SMDEQELEGMLKPFGQVISTRILRDTNGTSRGVGFARMESTEK 187
>gi|149756595|ref|XP_001504897.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 2
[Equus caballus]
Length = 407
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA+ L +Q + K P+ NLY+S LP
Sbjct: 92 TTNKCKGYGFVDFDSPSAAQKAVTALKANGVQAQMAKQQEQDPT-------NLYISNLPL 144
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE + P+G++I++RIL D T G ++ + E+
Sbjct: 145 SMDEQELEGMLKPFGQVISTRILRDTSGTSRGVGFARMESTEK 187
>gi|348580920|ref|XP_003476226.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 2
isoform 1 [Cavia porcellus]
Length = 407
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA+ L +Q + K P+ NLY+S LP
Sbjct: 92 TTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQQEQDPT-------NLYISNLPL 144
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE + P+G++I++RIL D T G ++ + E+
Sbjct: 145 SMDEQELEGMLKPFGQVISTRILRDTNGTSRGVGFARMESTEK 187
>gi|62751624|ref|NP_001015753.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Xenopus
(Silurana) tropicalis]
gi|58476781|gb|AAH89689.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Xenopus
(Silurana) tropicalis]
Length = 217
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 61/100 (61%), Gaps = 7/100 (7%)
Query: 25 ICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGAN 82
+C +I T +SLGY +VN+ +P DAE+A++T+N ++ K I++ +++ PS N
Sbjct: 42 VCRDMI-TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGN 100
Query: 83 LYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+++ L K + + L FS +G I++ +++CD ENG
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 42.7 bits (99), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 8/88 (9%)
Query: 26 CVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVS--YARPSSESIKGA-- 81
C + S GY FV++ + A++AI +NG+ L ++ + V R E+ GA
Sbjct: 128 CKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKCRREREAELGAKA 187
Query: 82 ----NLYVSGLPKHMSQQELESLFSPYG 105
N+Y+ + M + L+ FS YG
Sbjct: 188 KEFTNVYIKNFGEDMDDERLKETFSKYG 215
>gi|326511990|dbj|BAJ95976.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 530
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 54/95 (56%), Gaps = 2/95 (2%)
Query: 30 ISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSG 87
+++ +SLGY +VNY P DA +A+ LN L NK I+V Y+ PSS AN+++
Sbjct: 157 VNSRRSLGYAYVNYSNPMDAARAMEALNFAPLNNKPIRVMYSNRDPSSRRSGSANIFIKN 216
Query: 88 LPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
L K + + L FS +G I++ ++ D++ G
Sbjct: 217 LDKTIDNKTLHDTFSAFGAILSCKVAMDDIGQSKG 251
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 58/124 (46%), Gaps = 18/124 (14%)
Query: 27 VFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE---------- 76
V + +S +GFVN+ P+DA +A+ LNG ++ +K V A+ SE
Sbjct: 332 VMIGMDGKSRCFGFVNFESPDDAARAVEELNGKKINDKEWYVGRAQKKSEREMDLKRRFE 391
Query: 77 -SIK-------GANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGL 128
S+K G NLY+ L ++ +L LFS +G+I + +I+ D G +
Sbjct: 392 QSMKDAADKYQGQNLYLKNLDDGITDDQLRELFSNFGKITSCKIMRDQNGVSKGSGFVSF 451
Query: 129 GGRE 132
RE
Sbjct: 452 STRE 455
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 53/93 (56%), Gaps = 6/93 (6%)
Query: 27 VFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKV-SYARP-----SSESIKG 80
V + QS G+GFV Y + E A+ A+ +LNG+ + +K + V + R SS+ K
Sbjct: 241 VAMDDIGQSKGFGFVQYEKEESAQSAMKSLNGMLINDKPVYVGPFLRKQERDNSSDKAKF 300
Query: 81 ANLYVSGLPKHMSQQELESLFSPYGRIITSRIL 113
N++V L + ++++L +FS YG I ++ ++
Sbjct: 301 NNVFVKNLSESTTKEDLIKVFSEYGTITSAVVM 333
>gi|432102707|gb|ELK30188.1| Polyadenylate-binding protein 1 [Myotis davidii]
Length = 650
Score = 67.0 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 34/93 (36%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
+++SLGYG+VN+HRPEDA A+NT+N L K +++ + PS N++V+ L
Sbjct: 56 SSRSLGYGYVNFHRPEDAGHALNTMNFDVLHGKPVRIMWCHRDPSLRRSGVGNVFVNHLD 115
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ +EL LF+ +G I++ +++ D ENG
Sbjct: 116 ASIDNKELYDLFAGFGTILSCKVVSD----ENG 144
Score = 44.7 bits (104), Expect = 0.014, Method: Composition-based stats.
Identities = 25/100 (25%), Positives = 49/100 (49%), Gaps = 18/100 (18%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE----------SIK-- 79
+ +S G+GF+ + DA++AI +NG + + I VS A+ E IK
Sbjct: 235 SGKSKGFGFIRFECHADAKRAIEEVNGKQFGGRKIYVSRAQKKKEREEELQQKLEEIKQN 294
Query: 80 ------GANLYVSGLPKHMSQQELESLFSPYGRIITSRIL 113
G +L+V L + + L +F+P+G + +++++
Sbjct: 295 RIAKYHGMSLFVKNLAESTDDEHLRKIFAPFGTVTSAKVI 334
Score = 42.4 bits (98), Expect = 0.066, Method: Composition-based stats.
Identities = 25/94 (26%), Positives = 48/94 (51%), Gaps = 8/94 (8%)
Query: 37 GYGFVNYHRPEDAEKAINTLNGLRLQNKTIKV-SYARPS-------SESIKGANLYVSGL 88
G+GFV++ E A+KAI +NG ++ + + V + RP+ ++ + N+YV
Sbjct: 147 GHGFVHFETREAADKAIKEMNGSLVKERKVFVGQFKRPNQREEERRAKMEQFTNVYVKNF 206
Query: 89 PKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ + L +FS YG + + +I+ D+ G
Sbjct: 207 ADGTTDEYLLEIFSQYGPLSSVKIMTDDSGKSKG 240
Score = 37.0 bits (84), Expect = 3.0, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ + G+GFV++ E+A+KA+ ++G L + + VSYAR E
Sbjct: 334 IVKGGRRKGFGFVSFSSREEAKKAVEEMHGKMLSARPLYVSYARYKQE 381
>gi|357475273|ref|XP_003607922.1| Poly(A)-binding protein [Medicago truncatula]
gi|355508977|gb|AES90119.1| Poly(A)-binding protein [Medicago truncatula]
Length = 654
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 31/95 (32%), Positives = 53/95 (55%), Gaps = 2/95 (2%)
Query: 30 ISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSG 87
++T +SLGYG+VNY P+DA +A++ LN L N+ I++ Y+ PS N+++
Sbjct: 69 LTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNNRPIRIMYSHRDPSIRKSGQGNIFIKN 128
Query: 88 LPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
L K + + L FS +G I++ ++ D G
Sbjct: 129 LDKAIDHKALHDTFSSFGNILSCKVAVDGSGQSKG 163
Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 18/122 (14%)
Query: 33 AQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE---------------- 76
+S +GFVN+ +DA +A+ LNG ++ +K V A+ SE
Sbjct: 250 GKSKCFGFVNFESTDDAARAVEALNGKKIDDKEWYVGKAQKKSEREHELKIKFEQSMKEA 309
Query: 77 --SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERL 134
+GANLYV L ++ ++L+ LFS YG I + +++ D G + E
Sbjct: 310 ADKYQGANLYVKNLDDSIADEKLKELFSSYGTITSCKVMRDPNGVSRGSGFVAFSTPEEA 369
Query: 135 RR 136
R
Sbjct: 370 SR 371
Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 36/119 (30%), Positives = 59/119 (49%), Gaps = 10/119 (8%)
Query: 7 LNKLFTYEKVHLGFSD----AEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQ 62
L+K ++ +H FS V + + QS GYGFV + E A+KAI LNG+ L
Sbjct: 129 LDKAIDHKALHDTFSSFGNILSCKVAVDGSGQSKGYGFVQFDTEEAAQKAIEKLNGMLLN 188
Query: 63 NKTIKV-----SYARPSS-ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+K + V R S+ + K N++V L + + EL+ F +G I ++ ++ D
Sbjct: 189 DKQVYVGPFLRKQERESTGDRAKFNNVFVKNLSESTTDDELKKTFGEFGTITSAVVMRD 247
>gi|355709043|gb|AES03462.1| poly binding protein, cytoplasmic 1 [Mustela putorius furo]
Length = 230
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 61/100 (61%), Gaps = 7/100 (7%)
Query: 25 ICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGAN 82
+C +I T +SLGY +VN+ +P DAE+A++T+N ++ K +++ +++ PS N
Sbjct: 16 VCRDMI-TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGN 74
Query: 83 LYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+++ L K + + L FS +G I++ +++CD ENG
Sbjct: 75 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD----ENG 110
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 51/105 (48%), Gaps = 8/105 (7%)
Query: 26 CVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVS--YARPSSESIKGA-- 81
C + S GYGFV++ E AE+AI +NG+ L ++ + V +R E+ GA
Sbjct: 102 CKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARA 161
Query: 82 ----NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
N+Y+ + M + L+ LF +G ++ +++ D G
Sbjct: 162 KEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKG 206
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 25/37 (67%)
Query: 25 ICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRL 61
+ V + +S G+GFV++ R EDA+KA++ +NG L
Sbjct: 194 VKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 230
>gi|70794782|ref|NP_001020574.1| RNA-binding motif, single-stranded-interacting protein 2 [Rattus
norvegicus]
gi|67678407|gb|AAH97377.1| RNA binding motif, single stranded interacting protein 2 [Rattus
norvegicus]
gi|149029715|gb|EDL84886.1| RNA binding motif, single stranded interacting protein 2, isoform
CRA_a [Rattus norvegicus]
Length = 379
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 55/103 (53%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA+ L +Q + K P+ NLY+S LP
Sbjct: 90 TTNKCKGYGFVDFDSPSSAQKAVTALKASGVQAQMAKQQEQDPT-------NLYISNLPL 142
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE + P+G++I++RIL D G ++ + E+
Sbjct: 143 SMDEQELEGMLKPFGQVISTRILRDTTGASRGVGFARMESTEK 185
>gi|417400385|gb|JAA47142.1| Putative rna-binding protein elav/hu rrm superfamily [Desmodus
rotundus]
Length = 407
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA+ L +Q + K P+ NLY+S LP
Sbjct: 92 TTNKCKGYGFVDFDSPSAAQKAVMALKASGVQAQMAKQQEQDPT-------NLYISNLPL 144
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE + P+G++I++RIL D T G ++ + E+
Sbjct: 145 SMDEQELEGMLKPFGQVISTRILRDTSGTSRGVGFARMESTEK 187
>gi|363730217|ref|XP_418760.3| PREDICTED: RNA-binding motif, single-stranded-interacting protein 3
[Gallus gallus]
Length = 439
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T Q GYGFV++ P A+KA+ +L +Q + K P+ NLY+S LP
Sbjct: 109 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPV 161
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G +I++RIL D G ++ + E+
Sbjct: 162 SMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEK 204
Score = 38.9 bits (89), Expect = 0.70, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
E + NLY+ GLP + Q+L L PYG+I++++ + D
Sbjct: 68 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILD 107
>gi|395540318|ref|XP_003772102.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 3
[Sarcophilus harrisii]
Length = 451
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T Q GYGFV++ P A+KA+ +L +Q + K P+ NLY+S LP
Sbjct: 134 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPI 186
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G +I++RIL D G ++ + E+
Sbjct: 187 SMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEK 229
Score = 38.9 bits (89), Expect = 0.66, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
E + NLY+ GLP + Q+L L PYG+I++++ + D
Sbjct: 93 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILD 132
>gi|392350402|ref|XP_001061329.2| PREDICTED: RNA-binding motif, single-stranded-interacting protein
3-like isoform 4 [Rattus norvegicus]
Length = 415
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T Q GYGFV++ P A+KA+ +L +Q + K P+ NLY+S LP
Sbjct: 92 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPI 144
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G +I++RIL D G ++ + E+
Sbjct: 145 SMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEK 187
Score = 38.9 bits (89), Expect = 0.66, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
E + NLY+ GLP + Q+L L PYG+I++++ + D
Sbjct: 51 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILD 90
>gi|7446349|pir||S72368 single-stranded DNA-binding protein MSSP1 - human
gi|1139533|dbj|BAA11561.1| MSSP-1 [Homo sapiens]
Length = 373
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 53/92 (57%), Gaps = 7/92 (7%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA++ L +Q + K P+ NLY+S LP
Sbjct: 65 TTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPT-------NLYISNLPL 117
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENG 122
M +QELE++ P+G++I++RIL D T G
Sbjct: 118 SMDKQELENMLKPFGQVISTRILRDASGTSRG 149
Score = 38.5 bits (88), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRIL 113
+ + NLY+ GLP H + Q+L L PYG+I+++ +
Sbjct: 24 DQLSKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTNAI 61
>gi|357465579|ref|XP_003603074.1| Poly(A)-binding protein [Medicago truncatula]
gi|355492122|gb|AES73325.1| Poly(A)-binding protein [Medicago truncatula]
Length = 622
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 2/95 (2%)
Query: 30 ISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSG 87
+++ QSLGYG+VN+ P DA KA++ LN L NK I++ Y+ PS AN+++
Sbjct: 59 LASQQSLGYGYVNFSNPHDAAKAMDVLNFTPLNNKPIRIMYSHRDPSVRKSGAANIFIKN 118
Query: 88 LPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
L + + + L FS +G I++ +I D G
Sbjct: 119 LDRAIDHKALYDTFSIFGNILSCKIAMDASGLSKG 153
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 6/91 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE------SIKGANLY 84
++ S GYGFV + E A+ AI+ LNG+ L +K + V + + + + K N+Y
Sbjct: 147 ASGLSKGYGFVQFENEESAQSAIDKLNGMLLNDKPVYVGHFQRKQDRDNALSNAKFNNVY 206
Query: 85 VSGLPKHMSQQELESLFSPYGRIITSRILCD 115
V L + ++ +L++ F YG I ++ ++ D
Sbjct: 207 VKNLSESVTDDDLKNTFGEYGTITSAVVMRD 237
Score = 38.9 bits (89), Expect = 0.70, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 51/122 (41%), Gaps = 18/122 (14%)
Query: 33 AQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYA------------------RPS 74
+S +GFVN+ + A +A+ LNG + +K V A + +
Sbjct: 240 GKSKCFGFVNFENADAAAEAVEALNGKKFDDKEWYVGKALKKYERELELKERHEQSMKET 299
Query: 75 SESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERL 134
+ GANLY+ L ++ ++L LFS +G + + +IL D G + E
Sbjct: 300 VDKFYGANLYLKNLDDSVTDEKLSELFSEFGTVTSCKILRDPQGISRGSGFVAFSTPEEA 359
Query: 135 RR 136
R
Sbjct: 360 TR 361
>gi|217074874|gb|ACJ85797.1| unknown [Medicago truncatula]
Length = 494
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 2/95 (2%)
Query: 30 ISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSG 87
+++ QSLGYG+VN+ P DA KA++ LN L NK I++ Y+ PS AN+++
Sbjct: 59 LASQQSLGYGYVNFSNPHDAAKAMDVLNFTPLNNKPIRIMYSHRDPSVRKSGAANIFIKN 118
Query: 88 LPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
L + + + L FS +G I++ +I D G
Sbjct: 119 LDRAIDHKALYDTFSIFGNILSCKIAMDASGLSKG 153
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 6/91 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE------SIKGANLY 84
++ S GYGFV + E A+ AI+ LNG+ L +K + V + + + + K N+Y
Sbjct: 147 ASGLSKGYGFVQFENEESAQSAIDKLNGMLLNDKPVYVGHFQRKQDRDNALSNAKFNNVY 206
Query: 85 VSGLPKHMSQQELESLFSPYGRIITSRILCD 115
V L + ++ +L++ F YG I ++ ++ D
Sbjct: 207 VKNLSESVTDDDLKNTFGEYGTITSAVVMRD 237
Score = 38.9 bits (89), Expect = 0.78, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 51/122 (41%), Gaps = 18/122 (14%)
Query: 33 AQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYA------------------RPS 74
+S +GFVN+ + A +A+ LNG + +K V A + +
Sbjct: 240 GKSKCFGFVNFENADAAAEAVEALNGKKFDDKEWYVGKALKKYERELELKERHEQSMKET 299
Query: 75 SESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERL 134
+ GANLY+ L ++ ++L LFS +G + + +IL D G + E
Sbjct: 300 VDKFYGANLYLKNLDDSVTDEKLSELFSEFGTVTSCKILRDPQGISRGSGFVAFSTPEEA 359
Query: 135 RR 136
R
Sbjct: 360 TR 361
>gi|115529305|ref|NP_001070184.1| RNA-binding motif, single-stranded-interacting protein 3 [Danio
rerio]
gi|115313355|gb|AAI24430.1| RNA binding motif, single stranded interacting protein [Danio
rerio]
Length = 381
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 55/102 (53%), Gaps = 7/102 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T Q GYGFV++ P A+KA+ +L +Q + K P+ NLY+S LP
Sbjct: 59 TNQCKGYGFVDFDSPAAAQKAVASLKASGVQAQMAKQQEQDPT-------NLYISNLPVS 111
Query: 92 MSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G +I++RIL D G ++ + E+
Sbjct: 112 MDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEK 153
Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 27/42 (64%)
Query: 74 SSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
++E + NLY+ GLP + Q+L L PYG+I++++ + D
Sbjct: 15 AAEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILD 56
>gi|287324761|ref|NP_001165594.1| RNA-binding motif, single-stranded-interacting protein 3 isoform 1
[Mus musculus]
gi|125987522|sp|Q8BWL5.2|RBMS3_MOUSE RecName: Full=RNA-binding motif, single-stranded-interacting
protein 3
gi|148677316|gb|EDL09263.1| RNA binding motif, single stranded interacting protein, isoform
CRA_b [Mus musculus]
Length = 431
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T Q GYGFV++ P A+KA+ +L +Q + K P+ NLY+S LP
Sbjct: 92 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPI 144
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G +I++RIL D G ++ + E+
Sbjct: 145 SMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEK 187
Score = 38.9 bits (89), Expect = 0.72, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
E + NLY+ GLP + Q+L L PYG+I++++ + D
Sbjct: 51 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILD 90
>gi|351702929|gb|EHB05848.1| RNA-binding motif, single-stranded-interacting protein 3, partial
[Heterocephalus glaber]
Length = 412
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T Q GYGFV++ P A+KA+ +L +Q + K P+ NLY+S LP
Sbjct: 73 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPI 125
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G +I++RIL D G ++ + E+
Sbjct: 126 SMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEK 168
Score = 38.9 bits (89), Expect = 0.73, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
E + NLY+ GLP + Q+L L PYG+I++++ + D
Sbjct: 32 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILD 71
>gi|287324670|ref|NP_001165593.1| RNA-binding motif, single-stranded-interacting protein 3 isoform 2
[Mus musculus]
gi|26326603|dbj|BAC27045.1| unnamed protein product [Mus musculus]
gi|148677319|gb|EDL09266.1| RNA binding motif, single stranded interacting protein, isoform
CRA_e [Mus musculus]
Length = 415
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T Q GYGFV++ P A+KA+ +L +Q + K P+ NLY+S LP
Sbjct: 92 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPI 144
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G +I++RIL D G ++ + E+
Sbjct: 145 SMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEK 187
Score = 38.9 bits (89), Expect = 0.73, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
E + NLY+ GLP + Q+L L PYG+I++++ + D
Sbjct: 51 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILD 90
>gi|70663933|emb|CAE02947.3| OSJNBa0014K14.19 [Oryza sativa Japonica Group]
Length = 657
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 2/95 (2%)
Query: 30 ISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSG 87
IS+ +SLGY +VN++ P DA +A+ LN L K I+V Y+ PSS AN+++
Sbjct: 74 ISSRRSLGYAYVNFNNPVDAARALELLNFAPLNGKPIRVMYSNRDPSSRRSGSANIFIKN 133
Query: 88 LPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
L K + + L FS +G I++ ++ D + G
Sbjct: 134 LDKAIDHKTLHDTFSAFGNILSCKVATDEMGQSKG 168
Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats.
Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 18/108 (16%)
Query: 33 AQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE---------------- 76
+S +GF+N+ P+DA +A+ LNG ++ +K V A+ SE
Sbjct: 255 GKSRCFGFINFKSPDDAARAVEELNGKKINDKEWYVGRAQKKSEREIELKRRFEQSMKDA 314
Query: 77 --SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+G NLY+ L + +L LFS YG+I + +I+ D G
Sbjct: 315 ADKYQGLNLYMKNLDDSIGDDQLCELFSNYGKITSCKIMRDANGVSKG 362
Score = 50.4 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 49/87 (56%), Gaps = 6/87 (6%)
Query: 33 AQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVS-YARP-----SSESIKGANLYVS 86
QS G+GFV Y + E A+ AI +LNG+ + +K + V + R S + K N++V
Sbjct: 164 GQSKGFGFVQYDKGEAAQSAIKSLNGMLINDKPVYVGPFLRKQERENSVDKTKFNNVFVK 223
Query: 87 GLPKHMSQQELESLFSPYGRIITSRIL 113
L + ++++L +F YG I ++ I+
Sbjct: 224 NLSESTTKEDLVKIFGAYGNITSAVIM 250
>gi|26342432|dbj|BAC34878.1| unnamed protein product [Mus musculus]
Length = 422
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T Q GYGFV++ P A+KA+ +L +Q + K P+ NLY+S LP
Sbjct: 83 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPI 135
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G +I++RIL D G ++ + E+
Sbjct: 136 SMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEK 178
Score = 38.9 bits (89), Expect = 0.73, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
E + NLY+ GLP + Q+L L PYG+I++++ + D
Sbjct: 42 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILD 81
>gi|293337013|ref|NP_001169661.1| uncharacterized protein LOC100383542 [Zea mays]
gi|224030689|gb|ACN34420.1| unknown [Zea mays]
Length = 442
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 33/86 (38%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVS-YARPSSESIKGANLYVSGLP 89
S QS GYGFV Y E AE AIN LNG+ N+ + V + R +K N+Y+ LP
Sbjct: 125 SAGQSKGYGFVQYETEESAEAAINGLNGMLANNRKMFVGLHMRRRDREVKFTNVYIKNLP 184
Query: 90 KHMSQQELESLFSPYGRIITSRILCD 115
S+ +L F+P+G I ++ ++ D
Sbjct: 185 TEFSEDDLRQEFAPFGEITSAVVMRD 210
Score = 55.5 bits (132), Expect = 8e-06, Method: Composition-based stats.
Identities = 30/95 (31%), Positives = 52/95 (54%), Gaps = 2/95 (2%)
Query: 30 ISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSG 87
I + SLGYG+VN++ ++A +A+ LN L K I+V ++ PS ANL+V
Sbjct: 37 ILSGVSLGYGYVNFYSRQEATRALEALNFTPLIGKYIRVMFSNRDPSLRKSGRANLFVKN 96
Query: 88 LPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
L ++ + L +FS +G I++ ++ D+ G
Sbjct: 97 LEPNIDSKNLYEIFSSFGAILSCKVATDSAGQSKG 131
Score = 44.3 bits (103), Expect = 0.018, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 51/117 (43%), Gaps = 18/117 (15%)
Query: 38 YGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE------------------SIK 79
+GFVN+ +PE A +A+ NG + +KT+ V A+ E
Sbjct: 218 FGFVNFKKPEFAIEAVEKANGKAIGDKTLYVGRAQKKEERKAELKTRFGRGRDNKVDKPN 277
Query: 80 GANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLRR 136
G NLY+ + ++ + L+ LF +G++ + +++ D G + E +R
Sbjct: 278 GINLYLKNIDDGINDEGLKKLFEEFGQVASCKVMVDARGRSKGSGFVSFATAEAGQR 334
>gi|198465625|ref|XP_001353703.2| GA16892 [Drosophila pseudoobscura pseudoobscura]
gi|198150245|gb|EAL29436.2| GA16892 [Drosophila pseudoobscura pseudoobscura]
Length = 540
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 33/103 (32%), Positives = 57/103 (55%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ +P AE A+ L G +Q + K P+ NLY++ LP
Sbjct: 231 TTNKCKGYGFVDFEQPAFAECAVKGLQGKGVQAQMAKQQEQDPT-------NLYIANLPP 283
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
H + +LE++ S YG+++++RIL D G ++ + RE+
Sbjct: 284 HFKETDLEAMLSKYGQVVSTRILRDQQMNSKGVGFARMESREK 326
>gi|432908980|ref|XP_004078080.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein
3-like [Oryzias latipes]
Length = 537
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T Q GYGFV++ P A+KA+ +L +Q + K P+ NLY+S LP
Sbjct: 213 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPV 265
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G +I++RIL D G ++ + E+
Sbjct: 266 SMDEQELENMLKPFGHVISTRILRDANGLSRGVGFARMESTEK 308
Score = 38.9 bits (89), Expect = 0.65, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
E + NLY+ GLP + Q+L L PYG+I++++ + D
Sbjct: 172 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILD 211
>gi|115459296|ref|NP_001053248.1| Os04g0504800 [Oryza sativa Japonica Group]
gi|32490269|emb|CAE05558.1| OSJNBb0116K07.11 [Oryza sativa Japonica Group]
gi|113564819|dbj|BAF15162.1| Os04g0504800 [Oryza sativa Japonica Group]
gi|215695125|dbj|BAG90316.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 659
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 2/95 (2%)
Query: 30 ISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSG 87
IS+ +SLGY +VN++ P DA +A+ LN L K I+V Y+ PSS AN+++
Sbjct: 74 ISSRRSLGYAYVNFNNPVDAARALELLNFAPLNGKPIRVMYSNRDPSSRRSGSANIFIKN 133
Query: 88 LPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
L K + + L FS +G I++ ++ D + G
Sbjct: 134 LDKAIDHKTLHDTFSAFGNILSCKVATDEMGQSKG 168
Score = 55.8 bits (133), Expect = 6e-06, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 53/118 (44%), Gaps = 18/118 (15%)
Query: 33 AQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE---------------- 76
+S +GF+N+ P+DA +A+ LNG ++ +K V A+ SE
Sbjct: 255 GKSRCFGFINFKSPDDAARAVEELNGKKINDKEWYVGRAQKKSEREIELKRRFEQSMKDA 314
Query: 77 --SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRE 132
+G NLY+ L + +L LFS YG+I + +I+ D G + RE
Sbjct: 315 ADKYQGLNLYMKNLDDSIGDDQLCELFSNYGKITSCKIMRDANGVSKGSGFVAFSTRE 372
Score = 50.4 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 49/87 (56%), Gaps = 6/87 (6%)
Query: 33 AQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVS-YARP-----SSESIKGANLYVS 86
QS G+GFV Y + E A+ AI +LNG+ + +K + V + R S + K N++V
Sbjct: 164 GQSKGFGFVQYDKGEAAQSAIKSLNGMLINDKPVYVGPFLRKQERENSVDKTKFNNVFVK 223
Query: 87 GLPKHMSQQELESLFSPYGRIITSRIL 113
L + ++++L +F YG I ++ I+
Sbjct: 224 NLSESTTKEDLVKIFGAYGNITSAVIM 250
>gi|218195166|gb|EEC77593.1| hypothetical protein OsI_16552 [Oryza sativa Indica Group]
Length = 659
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 2/95 (2%)
Query: 30 ISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSG 87
IS+ +SLGY +VN++ P DA +A+ LN L K I+V Y+ PSS AN+++
Sbjct: 74 ISSRRSLGYAYVNFNNPVDAARALELLNFAPLNGKPIRVMYSNRDPSSRRSGSANIFIKN 133
Query: 88 LPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
L K + + L FS +G I++ ++ D + G
Sbjct: 134 LDKAIDHKTLHDTFSAFGNILSCKVATDEMGQSKG 168
Score = 55.8 bits (133), Expect = 6e-06, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 53/118 (44%), Gaps = 18/118 (15%)
Query: 33 AQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE---------------- 76
+S +GF+N+ P+DA +A+ LNG ++ +K V A+ SE
Sbjct: 255 GKSRCFGFINFKSPDDAARAVEELNGKKINDKEWYVGRAQKKSEREIELKRRFEQSMKDA 314
Query: 77 --SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRE 132
+G NLY+ L + +L LFS YG+I + +I+ D G + RE
Sbjct: 315 ADKYQGLNLYMKNLDDSIGDDQLCELFSNYGKITSCKIMRDANGVSKGSGFVAFSTRE 372
Score = 50.4 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 49/87 (56%), Gaps = 6/87 (6%)
Query: 33 AQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVS-YARP-----SSESIKGANLYVS 86
QS G+GFV Y + E A+ AI +LNG+ + +K + V + R S + K N++V
Sbjct: 164 GQSKGFGFVQYDKGEAAQSAIKSLNGMLINDKPVYVGPFLRKQERENSVDKTKFNNVFVK 223
Query: 87 GLPKHMSQQELESLFSPYGRIITSRIL 113
L + ++++L +F YG I ++ I+
Sbjct: 224 NLSESTTKEDLVKIFGAYGNITSAVIM 250
>gi|213513205|ref|NP_001135404.1| RNA-binding motif, single-stranded-interacting protein 1 isoform 1
[Mus musculus]
Length = 417
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 33/103 (32%), Positives = 58/103 (56%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA++ L +Q + K P+ NLY+S LP
Sbjct: 96 ATNKCKGYGFVDFDSPAAAQKAVSALKANGVQAQMAKQQEQDPT-------NLYISNLPL 148
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G++I++R+L D+ G ++ + E+
Sbjct: 149 SMDEQELENMLKPFGQVISTRVLRDSSGASRGVGFARMESTEK 191
Score = 39.7 bits (91), Expect = 0.41, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYY 125
+ + NLY+ GLP + + Q+L L PYG+I++++ + D AT K Y
Sbjct: 55 DQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDK-ATNKCKGY 103
>gi|26326473|dbj|BAC26980.1| unnamed protein product [Mus musculus]
Length = 414
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T Q GYGFV++ P A+KA+ +L +Q + K P+ NLY+S LP
Sbjct: 92 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPI 144
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G +I++RIL D G ++ + E+
Sbjct: 145 SMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEK 187
Score = 38.9 bits (89), Expect = 0.75, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
E + NLY+ GLP + Q+L L PYG+I++++ + D
Sbjct: 51 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILD 90
>gi|148747313|ref|NP_848775.2| RNA-binding motif, single-stranded-interacting protein 3 isoform 3
[Mus musculus]
gi|26328705|dbj|BAC28091.1| unnamed protein product [Mus musculus]
gi|109730747|gb|AAI17842.1| RNA binding motif, single stranded interacting protein [Mus
musculus]
gi|148677317|gb|EDL09264.1| RNA binding motif, single stranded interacting protein, isoform
CRA_c [Mus musculus]
Length = 414
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T Q GYGFV++ P A+KA+ +L +Q + K P+ NLY+S LP
Sbjct: 92 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPI 144
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G +I++RIL D G ++ + E+
Sbjct: 145 SMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEK 187
Score = 38.9 bits (89), Expect = 0.75, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
E + NLY+ GLP + Q+L L PYG+I++++ + D
Sbjct: 51 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILD 90
>gi|82697065|gb|AAI08403.1| RNA binding motif, single stranded interacting protein [Mus
musculus]
Length = 414
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T Q GYGFV++ P A+KA+ +L +Q + K P+ NLY+S LP
Sbjct: 92 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPI 144
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G +I++RIL D G ++ + E+
Sbjct: 145 SMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEK 187
Score = 38.9 bits (89), Expect = 0.75, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
E + NLY+ GLP + Q+L L PYG+I++++ + D
Sbjct: 51 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILD 90
>gi|410911798|ref|XP_003969377.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein
3-like [Takifugu rubripes]
Length = 435
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T Q GYGFV++ P A+KA+++L +Q + K P+ NLY+S LP
Sbjct: 91 NTNQCKGYGFVDFDSPAAAQKAVSSLKATGVQAQMAKQQEQDPT-------NLYISNLPV 143
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P G +I++RIL D G ++ + E+
Sbjct: 144 SMDEQELENMLKPLGHVISTRILRDANGVSRGVGFARMESTEK 186
>gi|354467701|ref|XP_003496307.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 3
isoform 4 [Cricetulus griseus]
Length = 430
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T Q GYGFV++ P A+KA+ +L +Q + K P+ NLY+S LP
Sbjct: 92 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPI 144
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G +I++RIL D G ++ + E+
Sbjct: 145 SMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEK 187
Score = 38.9 bits (89), Expect = 0.76, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
E + NLY+ GLP + Q+L L PYG+I++++ + D
Sbjct: 51 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILD 90
>gi|297832034|ref|XP_002883899.1| hypothetical protein ARALYDRAFT_899764 [Arabidopsis lyrata subsp.
lyrata]
gi|297329739|gb|EFH60158.1| hypothetical protein ARALYDRAFT_899764 [Arabidopsis lyrata subsp.
lyrata]
Length = 655
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 53/95 (55%), Gaps = 2/95 (2%)
Query: 30 ISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSG 87
++T +SLGYG+VN+ P+DA +AI LN + L K ++V Y+ PS N+++
Sbjct: 75 LATRRSLGYGYVNFTSPQDAARAIQELNYIPLNGKPVRVMYSHRDPSVRRSGAGNIFIKN 134
Query: 88 LPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
L K + + L FS +G II+ ++ D+ G
Sbjct: 135 LDKSIDHKALHDTFSVFGNIISCKVAVDSSGQSKG 169
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/97 (31%), Positives = 54/97 (55%), Gaps = 18/97 (18%)
Query: 37 GYGFVNYHRPEDAEKAINTLNGL----------RLQNKT-----IKVSYA---RPSSESI 78
G+GFVN+ +DA KA+ +LNG R Q K+ +KV Y + +++
Sbjct: 260 GFGFVNFENADDAAKAVESLNGKTFDDKEWFVGRAQKKSEREMELKVQYEQSLKEAADKF 319
Query: 79 KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+ +NLYV L +S ++L+ LF+PYG + + +++ D
Sbjct: 320 QSSNLYVKNLDDSVSDEKLKELFTPYGTVTSCKVMRD 356
Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 6/98 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVS-YARPSSESIKG-----ANLY 84
S+ QS GYGFV Y E A+KA+ LNG+ L +K + V + R G N+Y
Sbjct: 163 SSGQSKGYGFVQYETEESAQKAMGQLNGMLLNDKQVYVGPFLRRQERDSTGNKTIFTNVY 222
Query: 85 VSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
V L + + +L+++F +G+I ++ ++ D G
Sbjct: 223 VKNLAESTTDDDLKNIFGEFGKITSAVVMKDGEGKPKG 260
>gi|74190759|dbj|BAE28173.1| unnamed protein product [Mus musculus]
Length = 355
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 55/103 (53%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA+ L +Q + K P+ NLY+S LP
Sbjct: 66 TTNKCKGYGFVDFDSPSSAQKAVTALKASGVQAQMAKQQEQDPT-------NLYISNLPL 118
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE + P+G++I++RIL D G ++ + E+
Sbjct: 119 SMDEQELEGMLKPFGQVISTRILRDTSGASRGVGFARMESTEK 161
>gi|84872207|ref|NP_001034169.1| RNA-binding motif, single-stranded-interacting protein 2 isoform b
[Mus musculus]
Length = 355
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 55/103 (53%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA+ L +Q + K P+ NLY+S LP
Sbjct: 66 TTNKCKGYGFVDFDSPSSAQKAVTALKASGVQAQMAKQQEQDPT-------NLYISNLPL 118
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE + P+G++I++RIL D G ++ + E+
Sbjct: 119 SMDEQELEGMLKPFGQVISTRILRDTSGASRGVGFARMESTEK 161
>gi|84872203|ref|NP_062685.2| RNA-binding motif, single-stranded-interacting protein 2 isoform a
[Mus musculus]
gi|55976547|sp|Q8VC70.1|RBMS2_MOUSE RecName: Full=RNA-binding motif, single-stranded-interacting
protein 2
gi|18203746|gb|AAH21627.1| RNA binding motif, single stranded interacting protein 2 [Mus
musculus]
gi|26344281|dbj|BAC35797.1| unnamed protein product [Mus musculus]
gi|148692597|gb|EDL24544.1| RNA binding motif, single stranded interacting protein 2 [Mus
musculus]
Length = 383
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 55/103 (53%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA+ L +Q + K P+ NLY+S LP
Sbjct: 94 TTNKCKGYGFVDFDSPSSAQKAVTALKASGVQAQMAKQQEQDPT-------NLYISNLPL 146
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE + P+G++I++RIL D G ++ + E+
Sbjct: 147 SMDEQELEGMLKPFGQVISTRILRDTSGASRGVGFARMESTEK 189
>gi|119612222|gb|EAW91816.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_c [Homo
sapiens]
gi|119612227|gb|EAW91821.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_c [Homo
sapiens]
Length = 419
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 61/100 (61%), Gaps = 7/100 (7%)
Query: 25 ICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGAN 82
+C +I T +SLGY +VN+ +P DAE+A++T+N ++ K +++ +++ PS N
Sbjct: 42 VCRDMI-TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGN 100
Query: 83 LYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+++ L K + + L FS +G I++ +++CD ENG
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 18/109 (16%)
Query: 25 ICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE-------- 76
+ V + +S G+GFV++ R EDA+KA++ +NG L K I V A+ E
Sbjct: 220 VKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRK 279
Query: 77 ----------SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+G NLYV L + + L FSP+G I +++++ +
Sbjct: 280 FEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME 328
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 51/105 (48%), Gaps = 8/105 (7%)
Query: 26 CVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVS--YARPSSESIKGA-- 81
C + S GYGFV++ E AE+AI +NG+ L ++ + V +R E+ GA
Sbjct: 128 CKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARA 187
Query: 82 ----NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
N+Y+ + M + L+ LF +G ++ +++ D G
Sbjct: 188 KEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKG 232
Score = 35.8 bits (81), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + K + V+ A+ E
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 373
>gi|356552218|ref|XP_003544466.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 652
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 54/95 (56%), Gaps = 2/95 (2%)
Query: 30 ISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSG 87
++T +SLGYG+VN+ P+DA +A++ LN L N+ I++ Y+ PS AN+++
Sbjct: 68 LTTRRSLGYGYVNFSNPQDAARALDVLNFTPLNNRPIRIMYSHRDPSLRKSGTANIFIKN 127
Query: 88 LPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
L K + + L FS +G I++ +I D G
Sbjct: 128 LDKAIDHKALHDTFSSFGLILSCKIATDASGLSKG 162
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 36/124 (29%), Positives = 58/124 (46%), Gaps = 18/124 (14%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE-----------SIK 79
+ +S +GFVN+ P+DA KA+ LNG ++ +K V A+ SE SIK
Sbjct: 247 ADGKSRCFGFVNFENPDDAAKAVEGLNGKKVDDKEWYVGKAQKKSEREQELKGRFEQSIK 306
Query: 80 -------GANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRE 132
G NLY+ L +S ++L+ +F+ YG I + +++ D G + E
Sbjct: 307 ESADKYQGVNLYLKNLDDTISDEKLKEMFAEYGTITSCKVMRDPTGIGRGSGFVAFSTPE 366
Query: 133 RLRR 136
R
Sbjct: 367 EASR 370
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 6/91 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY-----ARPSSES-IKGANLY 84
++ S GYGFV + E A+ AI+ LNG+ + +K + V + R ++ S K N+Y
Sbjct: 156 ASGLSKGYGFVQFDSEESAQNAIDKLNGMLINDKQVYVGHFLRKQDRENALSKTKFNNVY 215
Query: 85 VSGLPKHMSQQELESLFSPYGRIITSRILCD 115
V L + + +EL F YG I ++ I+ D
Sbjct: 216 VKNLSESTTDEELMKFFGEYGTITSAVIMRD 246
>gi|348529959|ref|XP_003452479.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein
3-like [Oreochromis niloticus]
Length = 415
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T Q GYGFV++ P A+KA+++L +Q + K P+ NLY+S LP
Sbjct: 92 NTNQCKGYGFVDFDSPAAAQKAVSSLKATGVQAQMAKQQEQDPT-------NLYISNLPV 144
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P G +I++RIL D G ++ + E+
Sbjct: 145 SMDEQELENMLKPLGHVISTRILRDANGVSRGVGFARMESTEK 187
Score = 39.7 bits (91), Expect = 0.45, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 29/47 (61%)
Query: 69 SYARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
S ++ +E + NLY+ GLP + Q+L L PYG+I++++ + D
Sbjct: 44 SCSQGGAEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILD 90
>gi|348512352|ref|XP_003443707.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein
3-like [Oreochromis niloticus]
Length = 422
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T Q GYGFV++ P A+KA+ +L +Q + K P+ NLY+S LP
Sbjct: 97 NTNQCKGYGFVDFDSPAAAQKAVASLKASGVQAQMAKQQEQDPT-------NLYISNLPV 149
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G +I++RIL D G ++ + E+
Sbjct: 150 SMDEQELENMLKPFGHVISTRILRDANGLSRGVGFARMESTEK 192
Score = 38.9 bits (89), Expect = 0.73, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
E + NLY+ GLP + Q+L L PYG+I++++ + D
Sbjct: 56 EQLSKTNLYIRGLPPATTDQDLIKLCQPYGKIVSTKAILD 95
>gi|340383573|ref|XP_003390291.1| PREDICTED: protein alan shepard-like, partial [Amphimedon
queenslandica]
Length = 443
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 57/105 (54%), Gaps = 7/105 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T Q GYGFV++ DA KA+ +L + V +AR E NLY+S LPK+
Sbjct: 206 TGQCKGYGFVDFSEEADALKALESLQAI-----GTDVQFARRQEEDP--TNLYLSNLPKY 258
Query: 92 MSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLRR 136
S+++LE L SPYGRII++R+L + G + L RE +
Sbjct: 259 YSEKDLEKLLSPYGRIISTRVLREPSGYSRGVGFVRLDSRENCEK 303
>gi|225428865|ref|XP_002285190.1| PREDICTED: polyadenylate-binding protein 2 [Vitis vinifera]
gi|147839912|emb|CAN65906.1| hypothetical protein VITISV_004873 [Vitis vinifera]
Length = 648
Score = 66.2 bits (160), Expect = 5e-09, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 52/95 (54%), Gaps = 2/95 (2%)
Query: 30 ISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSG 87
+ST +SLGYG+VNY P+DA +A++ LN L K I++ Y+ PS N+++
Sbjct: 65 LSTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRIMYSHRDPSIRKSGTGNIFIKN 124
Query: 88 LPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
L K + + L FS +G I++ ++ D G
Sbjct: 125 LDKGIDHKALHDTFSAFGNILSCKVATDASGMSKG 159
Score = 48.9 bits (115), Expect = 7e-04, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 51/122 (41%), Gaps = 18/122 (14%)
Query: 33 AQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE---------------- 76
+S +GFVN+ +DA ++ LNG + +K V A+ SE
Sbjct: 246 GKSKCFGFVNFENVDDAAMSVEALNGQKFDDKEWYVGKAQKKSEREIELKSRFEQNMKEA 305
Query: 77 --SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERL 134
+GANLY+ L + +L+ LF+ +G I + +++ D G + E
Sbjct: 306 VDKFQGANLYIKNLDDSIGDDKLKELFAQFGTITSCKVMRDPNGLSRGSGFVAFSSPEEA 365
Query: 135 RR 136
R
Sbjct: 366 SR 367
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 6/91 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVS--YARPSSESI----KGANLY 84
++ S G+GFV + E A+KAI+ LNG+ L +K + V + ES K N++
Sbjct: 153 ASGMSKGHGFVQFDSEEAAQKAIDKLNGMLLNDKQVFVGPFVRKQERESTINKEKFNNVF 212
Query: 85 VSGLPKHMSQQELESLFSPYGRIITSRILCD 115
V + + M++++L +F +G I + ++ D
Sbjct: 213 VKNISEGMTEEDLTRIFGEFGPITSVVVMRD 243
>gi|56758360|gb|AAW27320.1| SJCHGC06322 protein [Schistosoma japonicum]
Length = 721
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 62/103 (60%), Gaps = 7/103 (6%)
Query: 23 AEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKG 80
A +C L +T QSLGYG+VN+ P+ AE+A+ LN L + I++ +++ PS
Sbjct: 42 ARVCRDL-ATRQSLGYGYVNFEDPKHAEQALEVLNYEPLMGRPIRIMWSQRDPSLRKSGK 100
Query: 81 ANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGK 123
N+++ L K + Q+EL FS +GRI++ +I+ D ENG+
Sbjct: 101 GNIFIKNLDKSIEQKELYDTFSFFGRILSCKIVMD----ENGQ 139
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 54/102 (52%), Gaps = 6/102 (5%)
Query: 27 VFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE------SIKG 80
+ + QS GYGFV++ + E AE+AI +N + ++++ + V P +E +K
Sbjct: 132 IVMDENGQSKGYGFVHFEKEECAERAIEKINNMIIRDRVVYVGKFIPKTERKSQARKVKF 191
Query: 81 ANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
NLYV P ++L+ +FS +G I ++ ++ DN G
Sbjct: 192 NNLYVKNFPPETDNEKLKEMFSEFGEIKSACVMKDNEGKSKG 233
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 60/125 (48%), Gaps = 23/125 (18%)
Query: 14 EKVHLGFSD-AEI---CVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTI--- 66
EK+ FS+ EI CV + +S G+GFV Y P+ AE A+ T++G ++ + +
Sbjct: 206 EKLKEMFSEFGEIKSACVMKDNEGKSKGFGFVCYLDPDHAENAVRTMHGKEIEGRVLYCA 265
Query: 67 --------------KVSYARPSSES--IKGANLYVSGLPKHMSQQELESLFSPYGRIITS 110
K+ R +S + NLYV L ++ + LE FS +G I ++
Sbjct: 266 RAQRKEERQEELKQKIEKQRAERQSNYMLNVNLYVKNLDDNIDDKRLEEAFSVHGSITSA 325
Query: 111 RILCD 115
+++ D
Sbjct: 326 KVMKD 330
>gi|4730923|dbj|BAA77263.1| Scr3 [Mus musculus]
Length = 356
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 55/103 (53%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA+ L +Q + K P+ NLY+S LP
Sbjct: 94 TTNKCKGYGFVDFDSPSSAQKAVTALKASGVQAQMAKQQEQDPT-------NLYISNLPL 146
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE + P+G++I++RIL D G ++ + E+
Sbjct: 147 SMDEQELEGMLKPFGQVISTRILRDTSGASRGVGFARMESTEK 189
>gi|6137350|pdb|1CVJ|A Chain A, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137351|pdb|1CVJ|B Chain B, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137352|pdb|1CVJ|C Chain C, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137353|pdb|1CVJ|D Chain D, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137354|pdb|1CVJ|E Chain E, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137355|pdb|1CVJ|F Chain F, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137356|pdb|1CVJ|G Chain G, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137357|pdb|1CVJ|H Chain H, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
Length = 190
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 61/100 (61%), Gaps = 7/100 (7%)
Query: 25 ICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGAN 82
+C +I T +SLGY +VN+ +P DAE+A++T+N ++ K +++ +++ PS N
Sbjct: 42 VCRDMI-TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGN 100
Query: 83 LYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+++ L K + + L FS +G I++ +++CD ENG
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 36.2 bits (82), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 26 CVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKV 68
C + S GYGFV++ E AE+AI +NG+ L ++ + V
Sbjct: 128 CKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
>gi|410905073|ref|XP_003966016.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein
3-like [Takifugu rubripes]
Length = 426
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T Q GYGFV++ P A+KA+ +L +Q + K P+ NLY+S LP
Sbjct: 101 NTNQCKGYGFVDFDSPAAAQKAVASLKASGVQAQMAKQQEQDPT-------NLYISNLPL 153
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G +I++RIL D G ++ + E+
Sbjct: 154 SMDEQELENMLKPFGHVISTRILRDANGHSRGVGFARMESTEK 196
>gi|354467695|ref|XP_003496304.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 3
isoform 1 [Cricetulus griseus]
Length = 414
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T Q GYGFV++ P A+KA+ +L +Q + K P+ NLY+S LP
Sbjct: 92 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPI 144
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G +I++RIL D G ++ + E+
Sbjct: 145 SMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEK 187
Score = 38.5 bits (88), Expect = 0.82, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
E + NLY+ GLP + Q+L L PYG+I++++ + D
Sbjct: 51 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILD 90
>gi|386770626|ref|NP_001246636.1| alan shepard, isoform F [Drosophila melanogaster]
gi|383291772|gb|AFH04307.1| alan shepard, isoform F [Drosophila melanogaster]
Length = 590
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 33/103 (32%), Positives = 57/103 (55%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ +P AE A+ L G +Q + K P+ NLY++ LP
Sbjct: 279 TTNKCKGYGFVDFEQPAFAECAVKGLQGKGVQAQMAKQQEQDPT-------NLYIANLPP 331
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
H + +LE++ S YG+++++RIL D G ++ + RE+
Sbjct: 332 HFKETDLEAMLSKYGQVVSTRILRDQQMNSKGVGFARMESREK 374
>gi|354467703|ref|XP_003496308.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 3
isoform 5 [Cricetulus griseus]
Length = 413
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T Q GYGFV++ P A+KA+ +L +Q + K P+ NLY+S LP
Sbjct: 92 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPI 144
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G +I++RIL D G ++ + E+
Sbjct: 145 SMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEK 187
Score = 38.5 bits (88), Expect = 0.82, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
E + NLY+ GLP + Q+L L PYG+I++++ + D
Sbjct: 51 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILD 90
>gi|195491940|ref|XP_002093780.1| GE20568 [Drosophila yakuba]
gi|251765013|sp|B4PIS2.1|SHEP_DROYA RecName: Full=Protein alan shepard
gi|194179881|gb|EDW93492.1| GE20568 [Drosophila yakuba]
Length = 582
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 33/103 (32%), Positives = 57/103 (55%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ +P AE A+ L G +Q + K P+ NLY++ LP
Sbjct: 267 TTNKCKGYGFVDFEQPAFAECAVKGLQGKGVQAQMAKQQEQDPT-------NLYIANLPP 319
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
H + +LE++ S YG+++++RIL D G ++ + RE+
Sbjct: 320 HFKETDLEAMLSKYGQVVSTRILRDQQMNSKGVGFARMESREK 362
>gi|62484450|ref|NP_729054.3| alan shepard, isoform A [Drosophila melanogaster]
gi|75017119|sp|Q8MSV2.1|SHEP_DROME RecName: Full=Protein alan shepard
gi|21428546|gb|AAM49933.1| LD40028p [Drosophila melanogaster]
gi|61678484|gb|AAF50788.5| alan shepard, isoform A [Drosophila melanogaster]
Length = 578
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 33/103 (32%), Positives = 57/103 (55%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ +P AE A+ L G +Q + K P+ NLY++ LP
Sbjct: 267 TTNKCKGYGFVDFEQPAFAECAVKGLQGKGVQAQMAKQQEQDPT-------NLYIANLPP 319
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
H + +LE++ S YG+++++RIL D G ++ + RE+
Sbjct: 320 HFKETDLEAMLSKYGQVVSTRILRDQQMNSKGVGFARMESREK 362
>gi|194866955|ref|XP_001971976.1| GG14139 [Drosophila erecta]
gi|251765066|sp|B3NGA1.1|SHEP_DROER RecName: Full=Protein alan shepard
gi|190653759|gb|EDV51002.1| GG14139 [Drosophila erecta]
Length = 582
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 33/103 (32%), Positives = 57/103 (55%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ +P AE A+ L G +Q + K P+ NLY++ LP
Sbjct: 267 TTNKCKGYGFVDFEQPAFAECAVKGLQGKGVQAQMAKQQEQDPT-------NLYIANLPP 319
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
H + +LE++ S YG+++++RIL D G ++ + RE+
Sbjct: 320 HFKETDLEAMLSKYGQVVSTRILRDQQMNSKGVGFARMESREK 362
>gi|126341451|ref|XP_001370004.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 3
isoform 1 [Monodelphis domestica]
Length = 421
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T Q GYGFV++ P A+KA+ +L +Q + K P+ NLY+S LP
Sbjct: 98 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPI 150
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G +I++RIL D G ++ + E+
Sbjct: 151 SMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEK 193
Score = 38.5 bits (88), Expect = 0.84, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
E + NLY+ GLP + Q+L L PYG+I++++ + D
Sbjct: 57 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILD 96
>gi|207079823|ref|NP_001129003.1| RNA-binding motif, single-stranded-interacting protein 3 [Pongo
abelii]
gi|75070779|sp|Q5RBD3.1|RBMS3_PONAB RecName: Full=RNA-binding motif, single-stranded-interacting
protein 3
gi|55728366|emb|CAH90927.1| hypothetical protein [Pongo abelii]
Length = 436
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T Q GYGFV++ P A+KA+ +L +Q + K P+ NLY+S LP
Sbjct: 96 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPI 148
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G +I++RIL D G ++ + E+
Sbjct: 149 SMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEK 191
Score = 38.5 bits (88), Expect = 0.84, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
E + NLY+ GLP + Q+L L PYG+I++++ + D
Sbjct: 55 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILD 94
>gi|410336415|gb|JAA37154.1| RNA binding motif, single stranded interacting protein 3 [Pan
troglodytes]
Length = 437
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T Q GYGFV++ P A+KA+ +L +Q + K P+ NLY+S LP
Sbjct: 97 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPI 149
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G +I++RIL D G ++ + E+
Sbjct: 150 SMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEK 192
Score = 38.5 bits (88), Expect = 0.84, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
E + NLY+ GLP + Q+L L PYG+I++++ + D
Sbjct: 56 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILD 95
>gi|51317355|ref|NP_001003793.1| RNA-binding motif, single-stranded-interacting protein 3 isoform 1
[Homo sapiens]
gi|296228267|ref|XP_002759724.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 3
isoform 2 [Callithrix jacchus]
gi|397511666|ref|XP_003826190.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 3
isoform 1 [Pan paniscus]
gi|403289969|ref|XP_003936109.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 3
isoform 1 [Saimiri boliviensis boliviensis]
gi|426339807|ref|XP_004033831.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 3
isoform 1 [Gorilla gorilla gorilla]
gi|74762382|sp|Q6XE24.1|RBMS3_HUMAN RecName: Full=RNA-binding motif, single-stranded-interacting
protein 3
gi|37930169|gb|AAP75555.1| RNA binding motif single stranded interacting protein 3 isoform
transcript variant DD23-L [Homo sapiens]
gi|119584810|gb|EAW64406.1| RNA binding motif, single stranded interacting protein, isoform
CRA_b [Homo sapiens]
gi|410251674|gb|JAA13804.1| RNA binding motif, single stranded interacting protein 3 [Pan
troglodytes]
gi|410301214|gb|JAA29207.1| RNA binding motif, single stranded interacting protein 3 [Pan
troglodytes]
Length = 437
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T Q GYGFV++ P A+KA+ +L +Q + K P+ NLY+S LP
Sbjct: 97 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPI 149
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G +I++RIL D G ++ + E+
Sbjct: 150 SMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEK 192
Score = 38.5 bits (88), Expect = 0.84, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
E + NLY+ GLP + Q+L L PYG+I++++ + D
Sbjct: 56 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILD 95
>gi|431922543|gb|ELK19486.1| Polyadenylate-binding protein 4 [Pteropus alecto]
Length = 720
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 61/100 (61%), Gaps = 7/100 (7%)
Query: 25 ICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGAN 82
+C +I T +SLGY +VN+ +P DAE+A++T+N ++ K I++ +++ PS N
Sbjct: 42 VCRDMI-TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGN 100
Query: 83 LYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+++ L K + + L FS +G I++ +++CD ENG
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 18/110 (16%)
Query: 25 ICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE-------- 76
+ V + +S G+GFV+Y + EDA KA+ +NG + K I V A+ E
Sbjct: 220 VKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEINGKVIFVGRAQKKVERQAELKRK 279
Query: 77 ----------SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
+G NLY+ L + ++L FSP+G I +++++ ++
Sbjct: 280 FEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED 329
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 8/105 (7%)
Query: 26 CVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVS--YARPSSESIKGA-- 81
C + S GY FV++ E A+KAI +NG+ L ++ + V +R E+ GA
Sbjct: 128 CKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKA 187
Query: 82 ----NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
N+Y+ + + + L+ LFS +G+ ++ +++ D G
Sbjct: 188 KEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKG 232
Score = 35.8 bits (81), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + +K + V+ A+ E
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|344288049|ref|XP_003415763.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 3
isoform 1 [Loxodonta africana]
Length = 436
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T Q GYGFV++ P A+KA+ +L +Q + K P+ NLY+S LP
Sbjct: 97 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPI 149
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G +I++RIL D G ++ + E+
Sbjct: 150 SMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEK 192
Score = 38.5 bits (88), Expect = 0.84, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
E + NLY+ GLP + Q+L L PYG+I++++ + D
Sbjct: 56 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILD 95
>gi|338715037|ref|XP_001492687.2| PREDICTED: RNA-binding motif, single-stranded-interacting protein 3
isoform 1 [Equus caballus]
Length = 436
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T Q GYGFV++ P A+KA+ +L +Q + K P+ NLY+S LP
Sbjct: 97 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPI 149
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G +I++RIL D G ++ + E+
Sbjct: 150 SMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEK 192
Score = 38.5 bits (88), Expect = 0.84, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
E + NLY+ GLP + Q+L L PYG+I++++ + D
Sbjct: 56 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILD 95
>gi|297287056|ref|XP_001095338.2| PREDICTED: RNA-binding motif, single-stranded-interacting protein
3-like isoform 1 [Macaca mulatta]
Length = 437
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T Q GYGFV++ P A+KA+ +L +Q + K P+ NLY+S LP
Sbjct: 97 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPI 149
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G +I++RIL D G ++ + E+
Sbjct: 150 SMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEK 192
Score = 38.5 bits (88), Expect = 0.85, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
E + NLY+ GLP + Q+L L PYG+I++++ + D
Sbjct: 56 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILD 95
>gi|358418060|ref|XP_001252034.3| PREDICTED: RNA-binding motif, single-stranded-interacting protein 3
isoform 1 [Bos taurus]
gi|359078079|ref|XP_002696917.2| PREDICTED: RNA-binding motif, single-stranded-interacting protein 3
isoform 1 [Bos taurus]
Length = 436
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T Q GYGFV++ P A+KA+ +L +Q + K P+ NLY+S LP
Sbjct: 97 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPI 149
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G +I++RIL D G ++ + E+
Sbjct: 150 SMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEK 192
Score = 38.5 bits (88), Expect = 0.85, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
E + NLY+ GLP + Q+L L PYG+I++++ + D
Sbjct: 56 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILD 95
>gi|291399748|ref|XP_002716283.1| PREDICTED: RNA binding motif, single stranded interacting protein
3-like [Oryctolagus cuniculus]
Length = 420
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T Q GYGFV++ P A+KA+ +L +Q + K P+ NLY+S LP
Sbjct: 97 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPI 149
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G +I++RIL D G ++ + E+
Sbjct: 150 SMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEK 192
Score = 38.5 bits (88), Expect = 0.85, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
E + NLY+ GLP + Q+L L PYG+I++++ + D
Sbjct: 56 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILD 95
>gi|345789080|ref|XP_850695.2| PREDICTED: RNA-binding motif, single-stranded-interacting protein 3
isoform 6 [Canis lupus familiaris]
Length = 436
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T Q GYGFV++ P A+KA+ +L +Q + K P+ NLY+S LP
Sbjct: 97 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPI 149
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G +I++RIL D G ++ + E+
Sbjct: 150 SMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEK 192
Score = 38.5 bits (88), Expect = 0.85, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
E + NLY+ GLP + Q+L L PYG+I++++ + D
Sbjct: 56 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILD 95
>gi|332816332|ref|XP_516341.3| PREDICTED: RNA-binding motif, single-stranded-interacting protein 3
isoform 5 [Pan troglodytes]
Length = 436
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T Q GYGFV++ P A+KA+ +L +Q + K P+ NLY+S LP
Sbjct: 97 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPI 149
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G +I++RIL D G ++ + E+
Sbjct: 150 SMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEK 192
Score = 38.5 bits (88), Expect = 0.85, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
E + NLY+ GLP + Q+L L PYG+I++++ + D
Sbjct: 56 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILD 95
>gi|57525954|ref|NP_001003541.1| RNA-binding motif, single-stranded-interacting protein 2 [Danio
rerio]
gi|50369685|gb|AAH76435.1| Zgc:100836 [Danio rerio]
Length = 400
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA+ L +Q + K P+ NLY+S LP
Sbjct: 94 TTNKCKGYGFVDFDSPASAQKAVTALKASGVQAQMAKQQEQDPT-------NLYISNLPL 146
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELES+ P+ ++I++RIL D T G ++ + E+
Sbjct: 147 SMDEQELESMLKPFSQVISTRILRDANGTSRGVGFARMESTEK 189
>gi|287324565|ref|NP_001165592.1| RNA-binding motif, single-stranded-interacting protein 3 isoform 4
[Mus musculus]
gi|26337895|dbj|BAC32633.1| unnamed protein product [Mus musculus]
gi|148677320|gb|EDL09267.1| RNA binding motif, single stranded interacting protein, isoform
CRA_f [Mus musculus]
Length = 463
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T Q GYGFV++ P A+KA+ +L +Q + K P+ NLY+S LP
Sbjct: 141 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPI 193
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G +I++RIL D G ++ + E+
Sbjct: 194 SMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEK 236
Score = 38.5 bits (88), Expect = 0.85, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
E + NLY+ GLP + Q+L L PYG+I++++ + D
Sbjct: 100 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILD 139
>gi|12083748|dbj|BAB20902.1| HrTLC2 [Halocynthia roretzi]
Length = 427
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 34/102 (33%), Positives = 58/102 (56%), Gaps = 7/102 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T+ GYGFV++ R E A A+ +L G + Q + K P+ NLY+SGLP +
Sbjct: 127 TSLCKGYGFVDFDRYESAVLAVTSLKGTKAQAQMAKQQEQDPT-------NLYLSGLPPN 179
Query: 92 MSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
++ +LE + PYG++I++RIL D+ G ++ + +E+
Sbjct: 180 FNEHDLEQMLLPYGQVISTRILRDSNGVSKGVGFARMESKEK 221
>gi|380793569|gb|AFE68660.1| polyadenylate-binding protein 4 isoform 3, partial [Macaca mulatta]
Length = 485
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 61/100 (61%), Gaps = 7/100 (7%)
Query: 25 ICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGAN 82
+C +I T +SLGY +VN+ +P DAE+A++T+N ++ K I++ +++ PS N
Sbjct: 42 VCRDMI-TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGN 100
Query: 83 LYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+++ L K + + L FS +G I++ +++CD ENG
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 18/110 (16%)
Query: 25 ICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE-------- 76
+ V + +S G+GFV+Y + EDA KA+ +NG + K I V A+ E
Sbjct: 220 VKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRK 279
Query: 77 ----------SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
+G NLY+ L + ++L FSP+G I +++++ ++
Sbjct: 280 FEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED 329
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 8/105 (7%)
Query: 26 CVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVS--YARPSSESIKGA-- 81
C + S GY FV++ E A+KAI +NG+ L ++ + V +R E+ GA
Sbjct: 128 CKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKA 187
Query: 82 ----NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
N+Y+ + + + L+ LFS +G+ ++ +++ D G
Sbjct: 188 KEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKG 232
Score = 35.4 bits (80), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + +K + V+ A+ E
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|410336417|gb|JAA37155.1| RNA binding motif, single stranded interacting protein 3 [Pan
troglodytes]
Length = 421
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T Q GYGFV++ P A+KA+ +L +Q + K P+ NLY+S LP
Sbjct: 97 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPI 149
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G +I++RIL D G ++ + E+
Sbjct: 150 SMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEK 192
Score = 38.5 bits (88), Expect = 0.87, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
E + NLY+ GLP + Q+L L PYG+I++++ + D
Sbjct: 56 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILD 95
>gi|358418058|ref|XP_003583827.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 3
[Bos taurus]
gi|359078076|ref|XP_003587651.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 3
isoform 4 [Bos taurus]
Length = 421
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T Q GYGFV++ P A+KA+ +L +Q + K P+ NLY+S LP
Sbjct: 97 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPI 149
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G +I++RIL D G ++ + E+
Sbjct: 150 SMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEK 192
Score = 38.5 bits (88), Expect = 0.87, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
E + NLY+ GLP + Q+L L PYG+I++++ + D
Sbjct: 56 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILD 95
>gi|355560081|gb|EHH16809.1| hypothetical protein EGK_12163 [Macaca mulatta]
gi|355747118|gb|EHH51732.1| hypothetical protein EGM_11167 [Macaca fascicularis]
Length = 436
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T Q GYGFV++ P A+KA+ +L +Q + K P+ NLY+S LP
Sbjct: 97 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPI 149
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G +I++RIL D G ++ + E+
Sbjct: 150 SMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEK 192
Score = 38.5 bits (88), Expect = 0.87, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
E + NLY+ GLP + Q+L L PYG+I++++ + D
Sbjct: 56 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILD 95
>gi|344288053|ref|XP_003415765.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 3
isoform 3 [Loxodonta africana]
Length = 434
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T Q GYGFV++ P A+KA+ +L +Q + K P+ NLY+S LP
Sbjct: 97 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPI 149
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G +I++RIL D G ++ + E+
Sbjct: 150 SMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEK 192
Score = 38.5 bits (88), Expect = 0.87, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
E + NLY+ GLP + Q+L L PYG+I++++ + D
Sbjct: 56 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILD 95
>gi|195501252|ref|XP_002097723.1| GE24318 [Drosophila yakuba]
gi|194183824|gb|EDW97435.1| GE24318 [Drosophila yakuba]
Length = 256
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 50/82 (60%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T S YGFV+Y P A A +++G + K +KV++ARPS + + NLYV+ LP +
Sbjct: 77 TGISCCYGFVDYVSPRQAAAAQESMDGYETRGKRLKVAFARPSEDPPRNNNLYVANLPTY 136
Query: 92 MSQQELESLFSPYGRIITSRIL 113
M ++++ LF+ YG ++ +L
Sbjct: 137 MDEKKVRELFATYGNVLDINLL 158
>gi|158259039|dbj|BAF85478.1| unnamed protein product [Homo sapiens]
Length = 421
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T Q GYGFV++ P A+KA+ +L +Q + K P+ NLY+S LP
Sbjct: 97 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPI 149
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G +I++RIL D G ++ + E+
Sbjct: 150 SMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEK 192
Score = 38.5 bits (88), Expect = 0.87, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
E + NLY+ GLP + Q+L L PYG+I++++ + D
Sbjct: 56 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILD 95
>gi|295148139|ref|NP_001171182.1| RNA-binding motif, single-stranded-interacting protein 3 isoform 5
[Homo sapiens]
gi|296228265|ref|XP_002759723.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 3
isoform 1 [Callithrix jacchus]
gi|332816330|ref|XP_003309728.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 3
isoform 2 [Pan troglodytes]
gi|397511668|ref|XP_003826191.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 3
isoform 2 [Pan paniscus]
gi|403289971|ref|XP_003936110.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 3
isoform 2 [Saimiri boliviensis boliviensis]
gi|426339809|ref|XP_004033832.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 3
isoform 2 [Gorilla gorilla gorilla]
gi|119584809|gb|EAW64405.1| RNA binding motif, single stranded interacting protein, isoform
CRA_a [Homo sapiens]
gi|410251676|gb|JAA13805.1| RNA binding motif, single stranded interacting protein 3 [Pan
troglodytes]
gi|410301216|gb|JAA29208.1| RNA binding motif, single stranded interacting protein 3 [Pan
troglodytes]
Length = 421
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T Q GYGFV++ P A+KA+ +L +Q + K P+ NLY+S LP
Sbjct: 97 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPI 149
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G +I++RIL D G ++ + E+
Sbjct: 150 SMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEK 192
Score = 38.5 bits (88), Expect = 0.87, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
E + NLY+ GLP + Q+L L PYG+I++++ + D
Sbjct: 56 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILD 95
>gi|12836631|dbj|BAB23742.1| unnamed protein product [Mus musculus]
Length = 168
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 61/100 (61%), Gaps = 7/100 (7%)
Query: 25 ICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGAN 82
+C +I T +SLGY +VN+ +P DAE+A++T+N ++ K +++ +++ PS N
Sbjct: 42 VCRDMI-TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGN 100
Query: 83 LYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+++ L K + + L FS +G I++ +++CD ENG
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 35.4 bits (80), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 26 CVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTI 66
C + S GYGFV++ E AE+AI +NG+ L ++ +
Sbjct: 128 CKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKV 168
>gi|426249016|ref|XP_004018248.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 3
isoform 2 [Ovis aries]
Length = 436
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T Q GYGFV++ P A+KA+ +L +Q + K P+ NLY+S LP
Sbjct: 97 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPI 149
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G +I++RIL D G ++ + E+
Sbjct: 150 SMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEK 192
Score = 38.5 bits (88), Expect = 0.87, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
E + NLY+ GLP + Q+L L PYG+I++++ + D
Sbjct: 56 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILD 95
>gi|344288051|ref|XP_003415764.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 3
isoform 2 [Loxodonta africana]
Length = 420
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T Q GYGFV++ P A+KA+ +L +Q + K P+ NLY+S LP
Sbjct: 97 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPI 149
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G +I++RIL D G ++ + E+
Sbjct: 150 SMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEK 192
Score = 38.5 bits (88), Expect = 0.87, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
E + NLY+ GLP + Q+L L PYG+I++++ + D
Sbjct: 56 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILD 95
>gi|338715033|ref|XP_003363195.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 3
[Equus caballus]
Length = 420
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T Q GYGFV++ P A+KA+ +L +Q + K P+ NLY+S LP
Sbjct: 97 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPI 149
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G +I++RIL D G ++ + E+
Sbjct: 150 SMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEK 192
Score = 38.5 bits (88), Expect = 0.87, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
E + NLY+ GLP + Q+L L PYG+I++++ + D
Sbjct: 56 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILD 95
>gi|297287054|ref|XP_002803089.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein
3-like isoform 3 [Macaca mulatta]
Length = 421
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T Q GYGFV++ P A+KA+ +L +Q + K P+ NLY+S LP
Sbjct: 97 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPI 149
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G +I++RIL D G ++ + E+
Sbjct: 150 SMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEK 192
Score = 38.5 bits (88), Expect = 0.87, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
E + NLY+ GLP + Q+L L PYG+I++++ + D
Sbjct: 56 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILD 95
>gi|195337625|ref|XP_002035429.1| GM13927 [Drosophila sechellia]
gi|251765069|sp|B4HUE4.1|SHEP_DROSE RecName: Full=Protein alan shepard
gi|194128522|gb|EDW50565.1| GM13927 [Drosophila sechellia]
Length = 579
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 33/103 (32%), Positives = 57/103 (55%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ +P AE A+ L G +Q + K P+ NLY++ LP
Sbjct: 267 TTNKCKGYGFVDFEQPAFAECAVKGLQGKGVQAQMAKQQEQDPT-------NLYIANLPP 319
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
H + +LE++ S YG+++++RIL D G ++ + RE+
Sbjct: 320 HFKETDLEAMLSKYGQVVSTRILRDQQMNSKGVGFARMESREK 362
>gi|427786809|gb|JAA58856.1| Putative rna-binding protein elav/hu rrm superfamily [Rhipicephalus
pulchellus]
Length = 365
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 56/100 (56%), Gaps = 7/100 (7%)
Query: 37 GYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQQE 96
GYGFV++ P AEKA+ L +Q + K P+ NLY++ LP +M++Q+
Sbjct: 112 GYGFVDFESPLAAEKAVKALQAQGVQAQMAKQQEQDPT-------NLYMANLPLYMAEQD 164
Query: 97 LESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLRR 136
LE L +G +I++RIL DN A G ++ + +E+ +
Sbjct: 165 LEQLLQAHGAVISTRILRDNSAQSRGVGFARMESKEKCEQ 204
>gi|194385720|dbj|BAG65235.1| unnamed protein product [Homo sapiens]
Length = 792
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T Q GYGFV++ P A+KA+ +L +Q + K P+ NLY+S LP
Sbjct: 96 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPI 148
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G +I++RIL D G ++ + E+
Sbjct: 149 SMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEK 191
Score = 38.5 bits (88), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
E + NLY+ GLP + Q+L L PYG+I++++ + D
Sbjct: 55 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILD 94
>gi|149018309|gb|EDL76950.1| rCG25178, isoform CRA_e [Rattus norvegicus]
Length = 388
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T Q GYGFV++ P A+KA+ +L +Q + K P+ NLY+S LP
Sbjct: 92 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPI 144
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G +I++RIL D G ++ + E+
Sbjct: 145 SMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEK 187
Score = 38.9 bits (89), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
E + NLY+ GLP + Q+L L PYG+I++++ + D
Sbjct: 51 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILD 90
>gi|73989917|ref|XP_862067.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 3
isoform 8 [Canis lupus familiaris]
Length = 420
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T Q GYGFV++ P A+KA+ +L +Q + K P+ NLY+S LP
Sbjct: 97 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPI 149
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G +I++RIL D G ++ + E+
Sbjct: 150 SMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEK 192
Score = 38.5 bits (88), Expect = 0.87, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
E + NLY+ GLP + Q+L L PYG+I++++ + D
Sbjct: 56 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILD 95
>gi|348588903|ref|XP_003480204.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein
3-like isoform 2 [Cavia porcellus]
Length = 431
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T Q GYGFV++ P A+KA+ +L +Q + K P+ NLY+S LP
Sbjct: 92 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPI 144
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G +I++RIL D G ++ + E+
Sbjct: 145 SMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEK 187
Score = 38.5 bits (88), Expect = 0.87, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
E + NLY+ GLP + Q+L L PYG+I++++ + D
Sbjct: 51 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILD 90
>gi|297287052|ref|XP_002803088.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein
3-like isoform 2 [Macaca mulatta]
Length = 433
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T Q GYGFV++ P A+KA+ +L +Q + K P+ NLY+S LP
Sbjct: 97 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPI 149
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G +I++RIL D G ++ + E+
Sbjct: 150 SMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEK 192
Score = 38.5 bits (88), Expect = 0.86, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
E + NLY+ GLP + Q+L L PYG+I++++ + D
Sbjct: 56 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILD 95
>gi|358418054|ref|XP_003583825.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 3
[Bos taurus]
gi|359078069|ref|XP_003587649.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 3
isoform 2 [Bos taurus]
gi|296475093|tpg|DAA17208.1| TPA: RNA binding motif, single stranded interacting protein 3-like
[Bos taurus]
Length = 420
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T Q GYGFV++ P A+KA+ +L +Q + K P+ NLY+S LP
Sbjct: 97 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPI 149
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G +I++RIL D G ++ + E+
Sbjct: 150 SMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEK 192
Score = 38.5 bits (88), Expect = 0.87, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
E + NLY+ GLP + Q+L L PYG+I++++ + D
Sbjct: 56 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILD 95
>gi|255538240|ref|XP_002510185.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223550886|gb|EEF52372.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 658
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 31/95 (32%), Positives = 53/95 (55%), Gaps = 2/95 (2%)
Query: 30 ISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSG 87
++T +SLGYG+VNY P+DA +A++ LN NK I++ Y+ PS N+++
Sbjct: 72 LTTRRSLGYGYVNYTSPQDAARALDILNFTPFNNKPIRIMYSHRDPSIRKSGTGNIFIKN 131
Query: 88 LPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
L K + + L FS +G I++ ++ D+ G
Sbjct: 132 LDKTIDHKALHDTFSSFGNILSCKVATDSSGQSRG 166
Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 54/90 (60%), Gaps = 5/90 (5%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKV-----SYARPSSESIKGANLYV 85
S+ QS GYGFV + E A+ AI+ LNG+ L +K + V + R S+ + K N+YV
Sbjct: 160 SSGQSRGYGFVQFDNEEAAQNAIDKLNGMLLNDKQVYVGHFLRKHERDSASNKKFNNVYV 219
Query: 86 SGLPKHMSQQELESLFSPYGRIITSRILCD 115
L + ++++L+++F YG I ++ I+ D
Sbjct: 220 KNLSESTTEEDLKNIFGEYGEITSAVIMRD 249
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 18/124 (14%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE-------------- 76
+ +S +GFVN+ + A KA+ +LNG ++ +K V A+ SE
Sbjct: 250 ADGKSKCFGFVNFENTDAAAKAVESLNGKKIDDKEWYVGKAQKKSERELELKSQFEQSMK 309
Query: 77 ----SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRE 132
+G NLY+ L +S + L+ LFS +G I + +++ D G + E
Sbjct: 310 EAVDKYQGVNLYIKNLDDSISDENLKELFSDFGMITSCKVMRDPSGISRGSGFVAFSTPE 369
Query: 133 RLRR 136
R
Sbjct: 370 EASR 373
>gi|51317351|ref|NP_055298.2| RNA-binding motif, single-stranded-interacting protein 3 isoform 2
[Homo sapiens]
gi|332816328|ref|XP_003309727.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 3
isoform 1 [Pan troglodytes]
gi|426339813|ref|XP_004033834.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 3
isoform 4 [Gorilla gorilla gorilla]
gi|441610942|ref|XP_003256847.2| PREDICTED: RNA-binding motif, single-stranded-interacting protein 3
isoform 3 [Nomascus leucogenys]
gi|119584811|gb|EAW64407.1| RNA binding motif, single stranded interacting protein, isoform
CRA_c [Homo sapiens]
Length = 420
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T Q GYGFV++ P A+KA+ +L +Q + K P+ NLY+S LP
Sbjct: 97 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPI 149
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G +I++RIL D G ++ + E+
Sbjct: 150 SMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEK 192
Score = 38.5 bits (88), Expect = 0.87, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
E + NLY+ GLP + Q+L L PYG+I++++ + D
Sbjct: 56 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILD 95
>gi|413918857|gb|AFW58789.1| hypothetical protein ZEAMMB73_983608 [Zea mays]
Length = 412
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 52/95 (54%), Gaps = 2/95 (2%)
Query: 30 ISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSG 87
+++ +SLGY +VNY P DA +A+ LN L NK I+V Y+ PSS AN+++
Sbjct: 69 VTSRRSLGYAYVNYSNPLDAARALEVLNFAALNNKPIRVMYSNRDPSSRRSGSANIFIKN 128
Query: 88 LPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
L K + + L FS +G I++ ++ D G
Sbjct: 129 LDKTIDNKTLHETFSSFGTILSCKVAVDEAGQSKG 163
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 60/137 (43%), Gaps = 19/137 (13%)
Query: 15 KVHLGFSDAEICVFLIS-TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARP 73
K+ + D V +I +S +GF+N+ P+ A A+ LNG ++ +K V A+
Sbjct: 231 KIFGEYGDITSAVVMIGMDGKSRCFGFINFENPDAASHAVQELNGKKINDKEWYVGRAQK 290
Query: 74 SSE-----------SIK-------GANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
SE S+K G NLY+ L + +L LFS +G+I + +++ D
Sbjct: 291 KSEREMELKRRFEQSLKDAADKYQGLNLYLKNLDDSIGDDQLCELFSNFGKITSYKVMRD 350
Query: 116 NLATENGKYYSGLGGRE 132
G + RE
Sbjct: 351 QNGLSKGSGFVAFSTRE 367
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 60/117 (51%), Gaps = 10/117 (8%)
Query: 7 LNKLFTYEKVHLGFSDAEI---CVFLISTA-QSLGYGFVNYHRPEDAEKAINTLNGLRLQ 62
L+K + +H FS C + A QS G+GFV Y + E A+ AI +LNG+ +
Sbjct: 129 LDKTIDNKTLHETFSSFGTILSCKVAVDEAGQSKGFGFVQYDKEEAAQNAIKSLNGMLIN 188
Query: 63 NKTIKVS-YARP-----SSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRIL 113
+K + V + R S + K N++V L + ++++L +F YG I ++ ++
Sbjct: 189 DKPVFVGPFVRKQERDHSFDKTKFNNVFVKNLSESTTKEDLLKIFGEYGDITSAVVM 245
>gi|313218343|emb|CBY41581.1| unnamed protein product [Oikopleura dioica]
Length = 613
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 62/102 (60%), Gaps = 4/102 (3%)
Query: 25 ICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGAN 82
+C +I T +SLGY +VN+ RPEDAE+AI+T+N L+ K I++ +++ P+ N
Sbjct: 42 VCRDMI-TRRSLGYAYVNFQRPEDAERAIDTMNFDELKGKAIRIMWSQRDPALRKSGVGN 100
Query: 83 LYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKY 124
+++ L K + + L FS +G I++ ++ NLA E+ Y
Sbjct: 101 IFIKNLDKTIDNKMLYDTFSAFGNILSCKVNV-NLAGESKGY 141
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 12/98 (12%)
Query: 34 QSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKG--------ANLYV 85
+S GYGFV++ E A KAI L+G+ + +K + V + E ++ N+++
Sbjct: 137 ESKGYGFVHFETEEAAVKAIEKLDGMLMNDKKVFVGRFKSRGERVREYGDRAKQFTNVFI 196
Query: 86 SGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGK 123
LP +L +F +G +++ + D ENGK
Sbjct: 197 KNLPAEWDDAKLTEVFGEHGSVMSVALATD----ENGK 230
Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 18/100 (18%)
Query: 34 QSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSES---------------- 77
+S +GFV++ E AEK + L+ + K I V A+ +E
Sbjct: 230 KSRQFGFVSFETHECAEKVVEKLHDKEFEGKKIFVGRAQKKAERQAELKVKFEKLKHERN 289
Query: 78 --IKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+G NLYV L ++ L F+PYG I +S+++ D
Sbjct: 290 QRYQGVNLYVKNLDDSITDDILREHFAPYGNITSSKVMTD 329
>gi|426249014|ref|XP_004018247.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 3
isoform 1 [Ovis aries]
Length = 420
Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T Q GYGFV++ P A+KA+ +L +Q + K P+ NLY+S LP
Sbjct: 97 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPI 149
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G +I++RIL D G ++ + E+
Sbjct: 150 SMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEK 192
Score = 38.5 bits (88), Expect = 0.89, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
E + NLY+ GLP + Q+L L PYG+I++++ + D
Sbjct: 56 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILD 95
>gi|51317353|ref|NP_001003792.1| RNA-binding motif, single-stranded-interacting protein 3 isoform 3
[Homo sapiens]
gi|296228269|ref|XP_002759725.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 3
isoform 3 [Callithrix jacchus]
gi|397511670|ref|XP_003826192.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 3
isoform 3 [Pan paniscus]
gi|403289973|ref|XP_003936111.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 3
isoform 3 [Saimiri boliviensis boliviensis]
gi|426339811|ref|XP_004033833.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 3
isoform 3 [Gorilla gorilla gorilla]
gi|119584812|gb|EAW64408.1| RNA binding motif, single stranded interacting protein, isoform
CRA_d [Homo sapiens]
Length = 419
Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T Q GYGFV++ P A+KA+ +L +Q + K P+ NLY+S LP
Sbjct: 96 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPI 148
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G +I++RIL D G ++ + E+
Sbjct: 149 SMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEK 191
Score = 38.5 bits (88), Expect = 0.89, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
E + NLY+ GLP + Q+L L PYG+I++++ + D
Sbjct: 55 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILD 94
>gi|410301218|gb|JAA29209.1| RNA binding motif, single stranded interacting protein 3 [Pan
troglodytes]
Length = 420
Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T Q GYGFV++ P A+KA+ +L +Q + K P+ NLY+S LP
Sbjct: 97 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPI 149
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G +I++RIL D G ++ + E+
Sbjct: 150 SMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEK 192
Score = 38.5 bits (88), Expect = 0.89, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
E + NLY+ GLP + Q+L L PYG+I++++ + D
Sbjct: 56 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILD 95
>gi|348588901|ref|XP_003480203.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein
3-like isoform 1 [Cavia porcellus]
Length = 415
Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T Q GYGFV++ P A+KA+ +L +Q + K P+ NLY+S LP
Sbjct: 92 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPI 144
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G +I++RIL D G ++ + E+
Sbjct: 145 SMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEK 187
Score = 38.5 bits (88), Expect = 0.89, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
E + NLY+ GLP + Q+L L PYG+I++++ + D
Sbjct: 51 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILD 90
>gi|344288055|ref|XP_003415766.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 3
isoform 4 [Loxodonta africana]
Length = 418
Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T Q GYGFV++ P A+KA+ +L +Q + K P+ NLY+S LP
Sbjct: 96 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPI 148
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G +I++RIL D G ++ + E+
Sbjct: 149 SMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEK 191
Score = 38.5 bits (88), Expect = 0.90, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
E + NLY+ GLP + Q+L L PYG+I++++ + D
Sbjct: 55 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILD 94
>gi|338715039|ref|XP_001492731.2| PREDICTED: RNA-binding motif, single-stranded-interacting protein 3
isoform 2 [Equus caballus]
Length = 418
Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T Q GYGFV++ P A+KA+ +L +Q + K P+ NLY+S LP
Sbjct: 96 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPI 148
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G +I++RIL D G ++ + E+
Sbjct: 149 SMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEK 191
Score = 38.5 bits (88), Expect = 0.90, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
E + NLY+ GLP + Q+L L PYG+I++++ + D
Sbjct: 55 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILD 94
>gi|338715035|ref|XP_003363196.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 3
[Equus caballus]
Length = 433
Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T Q GYGFV++ P A+KA+ +L +Q + K P+ NLY+S LP
Sbjct: 97 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPI 149
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G +I++RIL D G ++ + E+
Sbjct: 150 SMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEK 192
Score = 38.5 bits (88), Expect = 0.89, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
E + NLY+ GLP + Q+L L PYG+I++++ + D
Sbjct: 56 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILD 95
>gi|332816334|ref|XP_003309729.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 3
isoform 3 [Pan troglodytes]
Length = 433
Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T Q GYGFV++ P A+KA+ +L +Q + K P+ NLY+S LP
Sbjct: 97 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPI 149
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G +I++RIL D G ++ + E+
Sbjct: 150 SMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEK 192
Score = 38.5 bits (88), Expect = 0.89, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
E + NLY+ GLP + Q+L L PYG+I++++ + D
Sbjct: 56 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILD 95
>gi|297287058|ref|XP_002803090.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein
3-like isoform 4 [Macaca mulatta]
Length = 419
Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T Q GYGFV++ P A+KA+ +L +Q + K P+ NLY+S LP
Sbjct: 96 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPI 148
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G +I++RIL D G ++ + E+
Sbjct: 149 SMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEK 191
Score = 38.5 bits (88), Expect = 0.89, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
E + NLY+ GLP + Q+L L PYG+I++++ + D
Sbjct: 55 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILD 94
>gi|295148142|ref|NP_001171183.1| RNA-binding motif, single-stranded-interacting protein 3 isoform 4
[Homo sapiens]
gi|332215430|ref|XP_003256848.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 3
isoform 4 [Nomascus leucogenys]
gi|390476436|ref|XP_003735123.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 3
[Callithrix jacchus]
gi|426339815|ref|XP_004033835.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 3
isoform 5 [Gorilla gorilla gorilla]
gi|109659040|gb|AAI17316.1| RBMS3 protein [Homo sapiens]
gi|219520674|gb|AAI43522.1| Unknown (protein for MGC:177047) [Homo sapiens]
Length = 433
Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T Q GYGFV++ P A+KA+ +L +Q + K P+ NLY+S LP
Sbjct: 97 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPI 149
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G +I++RIL D G ++ + E+
Sbjct: 150 SMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEK 192
Score = 38.5 bits (88), Expect = 0.89, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
E + NLY+ GLP + Q+L L PYG+I++++ + D
Sbjct: 56 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILD 95
>gi|281365675|ref|NP_001163350.1| alan shepard, isoform E [Drosophila melanogaster]
gi|442630334|ref|NP_001261438.1| alan shepard, isoform G [Drosophila melanogaster]
gi|20151883|gb|AAM11301.1| RH63980p [Drosophila melanogaster]
gi|272455055|gb|ACZ94622.1| alan shepard, isoform E [Drosophila melanogaster]
gi|440215326|gb|AGB94133.1| alan shepard, isoform G [Drosophila melanogaster]
Length = 379
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 61/110 (55%), Gaps = 4/110 (3%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYA---RPS-SESIKGANLYVS 86
+T + GYGFV++ +P AE A+ L G +Q + KV RP+ + NLY++
Sbjct: 57 TTNKCKGYGFVDFEQPAFAECAVKGLQGKGVQAQMAKVGIWVLHRPAIQQEQDPTNLYIA 116
Query: 87 GLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLRR 136
LP H + +LE++ S YG+++++RIL D G ++ + RE+ +
Sbjct: 117 NLPPHFKETDLEAMLSKYGQVVSTRILRDQQMNSKGVGFARMESREKCEQ 166
>gi|432882375|ref|XP_004073999.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein
3-like [Oryzias latipes]
Length = 395
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 55/102 (53%), Gaps = 7/102 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T Q GYGFV++ P A+KA+++L +Q + K P+ NLY+S LP
Sbjct: 72 TNQCKGYGFVDFDSPAAAQKAVSSLKATGVQAQMAKQQEQDPT-------NLYISNLPVS 124
Query: 92 MSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P G +I++RIL D G ++ + E+
Sbjct: 125 MDEQELENMLKPLGHVISTRILRDANGVSRGVGFARMESTEK 166
Score = 38.9 bits (89), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 75 SESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+E + NLY+ GLP + Q+L L PYG+I++++ + D
Sbjct: 29 AEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILD 69
>gi|345789082|ref|XP_003433173.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 3
[Canis lupus familiaris]
Length = 433
Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T Q GYGFV++ P A+KA+ +L +Q + K P+ NLY+S LP
Sbjct: 97 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPI 149
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G +I++RIL D G ++ + E+
Sbjct: 150 SMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEK 192
Score = 38.5 bits (88), Expect = 0.89, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
E + NLY+ GLP + Q+L L PYG+I++++ + D
Sbjct: 56 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILD 95
>gi|426249020|ref|XP_004018250.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 3
isoform 4 [Ovis aries]
Length = 421
Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T Q GYGFV++ P A+KA+ +L +Q + K P+ NLY+S LP
Sbjct: 97 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPI 149
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G +I++RIL D G ++ + E+
Sbjct: 150 SMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEK 192
Score = 38.5 bits (88), Expect = 0.89, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
E + NLY+ GLP + Q+L L PYG+I++++ + D
Sbjct: 56 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILD 95
>gi|3746338|gb|AAC63910.1| RNA-binding protein [Homo sapiens]
Length = 411
Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T Q GYGFV++ P A+KA+ +L +Q + K P+ NLY+S LP
Sbjct: 88 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPI 140
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G +I++RIL D G ++ + E+
Sbjct: 141 SMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEK 183
Score = 38.5 bits (88), Expect = 0.89, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
E + NLY+ GLP + Q+L L PYG+I++++ + D
Sbjct: 47 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILD 86
>gi|355715852|gb|AES05423.1| RNA binding motif, single stranded interacting protein [Mustela
putorius furo]
Length = 456
Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T Q GYGFV++ P A+KA+ +L +Q + K P+ NLY+S LP
Sbjct: 149 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPI 201
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G +I++RIL D G ++ + E+
Sbjct: 202 SMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEK 244
Score = 38.5 bits (88), Expect = 0.89, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
E + NLY+ GLP + Q+L L PYG+I++++ + D
Sbjct: 108 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILD 147
>gi|195328687|ref|XP_002031046.1| GM24242 [Drosophila sechellia]
gi|194119989|gb|EDW42032.1| GM24242 [Drosophila sechellia]
Length = 244
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 50/83 (60%), Gaps = 2/83 (2%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
T S YGFV++ A A+N LNG + K +KV++ARPS + NLYV+ LP
Sbjct: 77 DTGISCCYGFVDFVSERQAAAAVNNLNGYETRGKRLKVAFARPS--EYENTNLYVANLPT 134
Query: 91 HMSQQELESLFSPYGRIITSRIL 113
+M ++++ LF+P+G I+ +L
Sbjct: 135 YMDEKKIRELFAPFGNILDVTLL 157
>gi|356510461|ref|XP_003523956.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
gi|83853808|gb|ABC47841.1| poly(A)-binding protein [Glycine max]
Length = 630
Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 33/95 (34%), Positives = 52/95 (54%), Gaps = 2/95 (2%)
Query: 30 ISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYA--RPSSESIKGANLYVSG 87
++T QSLGYG+VN+ DA KAI+ LN L K I++ Y+ PS+ AN+++
Sbjct: 59 VATQQSLGYGYVNFSNAHDAAKAIDVLNFTPLNGKIIRIMYSIRDPSARKSGAANVFIKN 118
Query: 88 LPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
L K + + L FS +G I++ ++ D G
Sbjct: 119 LDKAIDHKALYDTFSAFGNILSCKVATDASGQSKG 153
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 31/101 (30%), Positives = 45/101 (44%), Gaps = 18/101 (17%)
Query: 33 AQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE---------------- 76
+S G+GFVN+ +DA KA+ LNG K V A+ SE
Sbjct: 240 GKSKGFGFVNFANVDDAAKAVEALNGKNFDGKEWYVGKAQKKSERELELKGQHEQITKET 299
Query: 77 --SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
G NLY+ L + +EL LFS +G I + +++ D
Sbjct: 300 VDKYHGTNLYIKNLDDSVGDEELMELFSEFGTITSCKVMRD 340
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 51/91 (56%), Gaps = 6/91 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKV-----SYARPSSES-IKGANLY 84
++ QS G+GFV + E A+ AI+ LNG+ + +K + V R S+ S K N++
Sbjct: 147 ASGQSKGHGFVQFESEESAQNAIDKLNGMLINDKQVFVGPFLRKQDRESALSGTKFNNVF 206
Query: 85 VSGLPKHMSQQELESLFSPYGRIITSRILCD 115
V L M++ +LE +F YG I ++ ++ D
Sbjct: 207 VKNLLDSMTEADLERIFGEYGAITSAVVMRD 237
>gi|297847300|ref|XP_002891531.1| PAB8 binding protein 8 [Arabidopsis lyrata subsp. lyrata]
gi|297337373|gb|EFH67790.1| PAB8 binding protein 8 [Arabidopsis lyrata subsp. lyrata]
Length = 669
Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 53/95 (55%), Gaps = 2/95 (2%)
Query: 30 ISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYA--RPSSESIKGANLYVSG 87
++T +SLGYG+VNY P+DA +A+N LN + L + I+V Y+ PS N+++
Sbjct: 74 MTTRRSLGYGYVNYATPQDASRALNELNFMALNGRAIRVMYSVRDPSLRKSGVGNIFIKN 133
Query: 88 LPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
L K + + L FS +G I++ ++ D G
Sbjct: 134 LDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKG 168
Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 34/97 (35%), Positives = 50/97 (51%), Gaps = 6/97 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVS------YARPSSESIKGANLYV 85
+ QS GYGFV Y E A++AI+ LNG+ L +K + V PS E +K N+YV
Sbjct: 163 SGQSKGYGFVQYDTDEAAQRAIDKLNGMLLNDKQVYVGPFVHKLQRDPSGEKVKFTNVYV 222
Query: 86 SGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
L + +S +EL +F +G + I+ D G
Sbjct: 223 KNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKG 259
Score = 55.1 bits (131), Expect = 9e-06, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 56/122 (45%), Gaps = 18/122 (14%)
Query: 33 AQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE-----------SIK-- 79
+S G+GFVN+ +DA +A++ LNG +K V A+ SE S+K
Sbjct: 255 GKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEA 314
Query: 80 -----GANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERL 134
G+NLYV L + ++ +L F+P+G I + +++ D G + E
Sbjct: 315 ADKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPTGVSRGSGFVAFSTPEEA 374
Query: 135 RR 136
R
Sbjct: 375 SR 376
>gi|224045407|ref|XP_002197782.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 3
[Taeniopygia guttata]
Length = 419
Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T Q GYGFV++ P A+KA+ +L +Q + K P+ NLY+S LP
Sbjct: 96 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPV 148
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G +I++RIL D G ++ + E+
Sbjct: 149 SMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEK 191
Score = 38.5 bits (88), Expect = 0.99, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
E + NLY+ GLP + Q+L L PYG+I++++ + D
Sbjct: 55 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILD 94
>gi|149018306|gb|EDL76947.1| rCG25178, isoform CRA_b [Rattus norvegicus]
Length = 405
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T Q GYGFV++ P A+KA+ +L +Q + K P+ NLY+S LP
Sbjct: 92 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPI 144
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G +I++RIL D G ++ + E+
Sbjct: 145 SMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEK 187
Score = 38.9 bits (89), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
E + NLY+ GLP + Q+L L PYG+I++++ + D
Sbjct: 51 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILD 90
>gi|18402769|ref|NP_564554.1| poly(A) binding protein 8 [Arabidopsis thaliana]
gi|334183191|ref|NP_001185184.1| poly(A) binding protein 8 [Arabidopsis thaliana]
gi|10120431|gb|AAG13056.1|AC011807_15 Putative Poly-A Binding Protein [Arabidopsis thaliana]
gi|13877633|gb|AAK43894.1|AF370517_1 Putative Poly-A Binding Protein [Arabidopsis thaliana]
gi|17978685|gb|AAL47336.1| putative Poly-A Binding Protein [Arabidopsis thaliana]
gi|332194351|gb|AEE32472.1| poly(A) binding protein 8 [Arabidopsis thaliana]
gi|332194352|gb|AEE32473.1| poly(A) binding protein 8 [Arabidopsis thaliana]
Length = 671
Score = 65.5 bits (158), Expect = 6e-09, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 53/95 (55%), Gaps = 2/95 (2%)
Query: 30 ISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYA--RPSSESIKGANLYVSG 87
++T +SLGYG+VNY P+DA +A+N LN + L + I+V Y+ PS N+++
Sbjct: 80 MTTRRSLGYGYVNYATPQDASRALNELNFMALNGRAIRVMYSVRDPSLRKSGVGNIFIKN 139
Query: 88 LPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
L K + + L FS +G I++ ++ D G
Sbjct: 140 LDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKG 174
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 34/97 (35%), Positives = 49/97 (50%), Gaps = 6/97 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVS------YARPSSESIKGANLYV 85
+ QS GYGFV Y E A+ AI+ LNG+ L +K + V PS E +K N+YV
Sbjct: 169 SGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGPFVHKLQRDPSGEKVKFTNVYV 228
Query: 86 SGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
L + +S +EL +F +G + I+ D G
Sbjct: 229 KNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKG 265
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 56/122 (45%), Gaps = 18/122 (14%)
Query: 33 AQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE-----------SIK-- 79
+S G+GFVN+ +DA +A++ LNG +K V A+ SE S+K
Sbjct: 261 GKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEA 320
Query: 80 -----GANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERL 134
G+NLYV L + ++ +L F+P+G I + +++ D G + E
Sbjct: 321 ADKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEA 380
Query: 135 RR 136
R
Sbjct: 381 TR 382
>gi|400260922|pdb|4F02|A Chain A, Crystal Structure Of The Pabp-Binding Site Of Eif4g In
Complex With Rrm1-2 Of Pabp And Poly(A)
gi|400260925|pdb|4F02|D Chain D, Crystal Structure Of The Pabp-Binding Site Of Eif4g In
Complex With Rrm1-2 Of Pabp And Poly(A)
Length = 213
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 61/100 (61%), Gaps = 7/100 (7%)
Query: 25 ICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGAN 82
+C +I T +SLGY +VN+ +P DAE+A++T+N ++ K +++ +++ PS N
Sbjct: 47 VCRDMI-TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGN 105
Query: 83 LYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+++ L K + + L FS +G I++ +++CD ENG
Sbjct: 106 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD----ENG 141
Score = 36.2 bits (82), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 26 CVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKV 68
C + S GYGFV++ E AE+AI +NG+ L ++ + V
Sbjct: 133 CKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 175
>gi|358418056|ref|XP_003583826.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 3
[Bos taurus]
gi|359078072|ref|XP_003587650.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 3
isoform 3 [Bos taurus]
Length = 433
Score = 65.5 bits (158), Expect = 6e-09, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T Q GYGFV++ P A+KA+ +L +Q + K P+ NLY+S LP
Sbjct: 97 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPI 149
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G +I++RIL D G ++ + E+
Sbjct: 150 SMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEK 192
Score = 38.5 bits (88), Expect = 0.93, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
E + NLY+ GLP + Q+L L PYG+I++++ + D
Sbjct: 56 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILD 95
>gi|345789084|ref|XP_862040.2| PREDICTED: RNA-binding motif, single-stranded-interacting protein 3
isoform 7 [Canis lupus familiaris]
Length = 418
Score = 65.5 bits (158), Expect = 6e-09, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T Q GYGFV++ P A+KA+ +L +Q + K P+ NLY+S LP
Sbjct: 96 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPI 148
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G +I++RIL D G ++ + E+
Sbjct: 149 SMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEK 191
Score = 38.5 bits (88), Expect = 0.93, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
E + NLY+ GLP + Q+L L PYG+I++++ + D
Sbjct: 55 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILD 94
>gi|149639381|ref|XP_001507141.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 3
[Ornithorhynchus anatinus]
Length = 420
Score = 65.5 bits (158), Expect = 6e-09, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T Q GYGFV++ P A+KA+ +L +Q + K P+ NLY+S LP
Sbjct: 97 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPI 149
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G +I++RIL D G ++ + E+
Sbjct: 150 SMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEK 192
Score = 38.5 bits (88), Expect = 0.93, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
E + NLY+ GLP + Q+L L PYG+I++++ + D
Sbjct: 56 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILD 95
>gi|358418062|ref|XP_003583828.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 3
[Bos taurus]
gi|359078082|ref|XP_003587652.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 3
isoform 5 [Bos taurus]
Length = 418
Score = 65.5 bits (158), Expect = 6e-09, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T Q GYGFV++ P A+KA+ +L +Q + K P+ NLY+S LP
Sbjct: 96 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPI 148
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G +I++RIL D G ++ + E+
Sbjct: 149 SMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEK 191
Score = 38.5 bits (88), Expect = 0.95, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
E + NLY+ GLP + Q+L L PYG+I++++ + D
Sbjct: 55 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILD 94
>gi|326670840|ref|XP_002667679.2| PREDICTED: RNA-binding motif, single-stranded-interacting protein
1-like, partial [Danio rerio]
Length = 208
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 57/103 (55%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA++ L +Q + K P+ NLY+S LP
Sbjct: 93 TTNKCKGYGFVDFDSPAAAQKAVSALKTSGVQAQMAKQQEQDPT-------NLYISNLPL 145
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G+++++RIL D G ++ + E+
Sbjct: 146 TMDEQELEAMLKPFGQVVSTRILRDTNGASRGVGFARMESTEK 188
>gi|74219194|dbj|BAE26733.1| unnamed protein product [Mus musculus]
Length = 370
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 58/103 (56%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA++ L +Q + K P+ NLY+S LP
Sbjct: 65 ATNKCKGYGFVDFDSPAAAQKAVSALKANGVQAQMAKQQEQDPT-------NLYISNLPL 117
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G++I++R+L D+ G ++ + E+
Sbjct: 118 SMDEQELENMLKPFGQVISTRVLRDSSGASRGVGFARMESTEK 160
Score = 39.7 bits (91), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYY 125
+ + NLY+ GLP + + Q+L L PYG+I++++ + D AT K Y
Sbjct: 24 DQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDK-ATNKCKGY 72
>gi|4730906|dbj|BAA77262.1| MSSP [Mus musculus]
gi|4730921|dbj|BAA77264.1| MSSP [Mus musculus]
gi|133777054|gb|AAH16501.2| RNA binding motif, single stranded interacting protein 1 [Mus
musculus]
gi|148695021|gb|EDL26968.1| RNA binding motif, single stranded interacting protein 1, isoform
CRA_a [Mus musculus]
gi|148695022|gb|EDL26969.1| RNA binding motif, single stranded interacting protein 1, isoform
CRA_a [Mus musculus]
gi|148695023|gb|EDL26970.1| RNA binding motif, single stranded interacting protein 1, isoform
CRA_a [Mus musculus]
gi|148695024|gb|EDL26971.1| RNA binding motif, single stranded interacting protein 1, isoform
CRA_a [Mus musculus]
gi|148695025|gb|EDL26972.1| RNA binding motif, single stranded interacting protein 1, isoform
CRA_a [Mus musculus]
Length = 370
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 58/103 (56%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA++ L +Q + K P+ NLY+S LP
Sbjct: 65 ATNKCKGYGFVDFDSPAAAQKAVSALKANGVQAQMAKQQEQDPT-------NLYISNLPL 117
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G++I++R+L D+ G ++ + E+
Sbjct: 118 SMDEQELENMLKPFGQVISTRVLRDSSGASRGVGFARMESTEK 160
Score = 39.3 bits (90), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYY 125
+ + NLY+ GLP + + Q+L L PYG+I++++ + D AT K Y
Sbjct: 24 DQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDK-ATNKCKGY 72
>gi|395816927|ref|XP_003781934.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 3
[Otolemur garnettii]
Length = 425
Score = 65.5 bits (158), Expect = 7e-09, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T Q GYGFV++ P A+KA+ +L +Q + K P+ NLY+S LP
Sbjct: 97 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPI 149
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G +I++RIL D G ++ + E+
Sbjct: 150 SMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEK 192
Score = 38.5 bits (88), Expect = 0.99, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
E + NLY+ GLP + Q+L L PYG+I++++ + D
Sbjct: 56 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILD 95
>gi|224059164|ref|XP_002299747.1| predicted protein [Populus trichocarpa]
gi|222847005|gb|EEE84552.1| predicted protein [Populus trichocarpa]
Length = 367
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 63/115 (54%), Gaps = 18/115 (15%)
Query: 23 AEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR---------- 72
+ + + + +S +GFVN+ P+DA+KA++ +NG + +KT+ V A+
Sbjct: 222 SSVAIMMDHEGKSKHFGFVNFKSPDDAKKAVDVMNGSVIGSKTLFVGKAQRKSERTMILK 281
Query: 73 --------PSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLAT 119
S+E ++ +NLYV L + ++L+ +FS YG+I++ +++C N T
Sbjct: 282 QEYKDLHNRSTEKLRASNLYVKNLNVDIDDKKLKEVFSAYGKILSVKVICHNDGT 336
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 7/94 (7%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SL Y +VN + A +A+ LN L+ K +++ + + P + ANL+V L
Sbjct: 54 TGKSLCYAYVNLYSHAQASRALGLLNHTNLKGKPMRIMWCQRDPFARKTGFANLFVKNLD 113
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENGK 123
+S LES+FS YG I++ ++ A ENG+
Sbjct: 114 FSISSSCLESIFSKYGTILSCKV-----AGENGR 142
Score = 35.8 bits (81), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
Query: 34 QSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGA------NLYVSG 87
+S G+GFV + + A A L+ L K + V +E A NLYV
Sbjct: 142 RSKGFGFVQFESQDSALVAQTALHDTMLGGKKLHVCKFVKKTERTAAAPCEVFTNLYVKN 201
Query: 88 LPKHMSQQELESLFSPYGRIITSRILCDN 116
L + +++ L+ +FS G + + I+ D+
Sbjct: 202 LDETITEDGLKDMFSVVGDVSSVAIMMDH 230
>gi|426249018|ref|XP_004018249.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 3
isoform 3 [Ovis aries]
Length = 433
Score = 65.5 bits (158), Expect = 7e-09, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T Q GYGFV++ P A+KA+ +L +Q + K P+ NLY+S LP
Sbjct: 97 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPI 149
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G +I++RIL D G ++ + E+
Sbjct: 150 SMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEK 192
Score = 38.5 bits (88), Expect = 1.00, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
E + NLY+ GLP + Q+L L PYG+I++++ + D
Sbjct: 56 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILD 95
>gi|74221534|dbj|BAE21490.1| unnamed protein product [Mus musculus]
Length = 370
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 58/103 (56%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA++ L +Q + K P+ NLY+S LP
Sbjct: 65 ATNKCKGYGFVDFDSPAAAQKAVSALKANGVQAQMAKQQEQDPT-------NLYISNLPL 117
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G++I++R+L D+ G ++ + E+
Sbjct: 118 SMDEQELENMLKPFGQVISTRVLRDSSGASRGVGFARMESTEK 160
Score = 39.3 bits (90), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYY 125
+ + NLY+ GLP + + Q+L L PYG+I++++ + D AT K Y
Sbjct: 24 DQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDK-ATNKCKGY 72
>gi|148695026|gb|EDL26973.1| RNA binding motif, single stranded interacting protein 1, isoform
CRA_b [Mus musculus]
Length = 393
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 58/103 (56%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA++ L +Q + K P+ NLY+S LP
Sbjct: 88 ATNKCKGYGFVDFDSPAAAQKAVSALKANGVQAQMAKQQEQDPT-------NLYISNLPL 140
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G++I++R+L D+ G ++ + E+
Sbjct: 141 SMDEQELENMLKPFGQVISTRVLRDSSGASRGVGFARMESTEK 183
Score = 39.7 bits (91), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYY 125
+ + NLY+ GLP + + Q+L L PYG+I++++ + D AT K Y
Sbjct: 47 DQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDK-ATNKCKGY 95
>gi|34785556|gb|AAH57866.1| Rbms1 protein [Mus musculus]
gi|74145550|dbj|BAE36195.1| unnamed protein product [Mus musculus]
Length = 386
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 58/103 (56%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA++ L +Q + K P+ NLY+S LP
Sbjct: 65 ATNKCKGYGFVDFDSPAAAQKAVSALKANGVQAQMAKQQEQDPT-------NLYISNLPL 117
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G++I++R+L D+ G ++ + E+
Sbjct: 118 SMDEQELENMLKPFGQVISTRVLRDSSGASRGVGFARMESTEK 160
Score = 39.7 bits (91), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYY 125
+ + NLY+ GLP + + Q+L L PYG+I++++ + D AT K Y
Sbjct: 24 DQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDK-ATNKCKGY 72
>gi|410263252|gb|JAA19592.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 631
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 61/100 (61%), Gaps = 7/100 (7%)
Query: 25 ICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGAN 82
+C +I T +SLGY +VN+ +P DAE+A++T+N ++ K I++ +++ PS N
Sbjct: 42 VCRDMI-TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGN 100
Query: 83 LYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+++ L K + + L FS +G I++ +++CD ENG
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 18/110 (16%)
Query: 25 ICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE-------- 76
+ V +S G+GFV+Y + EDA KA+ +NG + K I V A+ E
Sbjct: 220 VKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRK 279
Query: 77 ----------SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
+G NLY+ L + ++L FSP+G I +++++ ++
Sbjct: 280 FEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED 329
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 54/106 (50%), Gaps = 12/106 (11%)
Query: 26 CVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVS--YARPSSESIKGA-- 81
C + S GY FV++ E A+KAI +NG+ L ++ + V +R E+ GA
Sbjct: 128 CKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKA 187
Query: 82 ----NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGK 123
N+Y+ + + + L+ LFS +G+ ++ +++ D NGK
Sbjct: 188 KEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD----PNGK 229
Score = 35.0 bits (79), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + +K + V+ A+ E
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|392350400|ref|XP_003750647.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein
3-like [Rattus norvegicus]
Length = 402
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T Q GYGFV++ P A+KA+ +L +Q + K P+ NLY+S LP
Sbjct: 92 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPI 144
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G +I++RIL D G ++ + E+
Sbjct: 145 SMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEK 187
Score = 38.9 bits (89), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
E + NLY+ GLP + Q+L L PYG+I++++ + D
Sbjct: 51 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILD 90
>gi|348588907|ref|XP_003480206.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein
3-like isoform 4 [Cavia porcellus]
Length = 428
Score = 65.5 bits (158), Expect = 7e-09, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T Q GYGFV++ P A+KA+ +L +Q + K P+ NLY+S LP
Sbjct: 92 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPI 144
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G +I++RIL D G ++ + E+
Sbjct: 145 SMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEK 187
Score = 38.5 bits (88), Expect = 1.0, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
E + NLY+ GLP + Q+L L PYG+I++++ + D
Sbjct: 51 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILD 90
>gi|149018310|gb|EDL76951.1| rCG25178, isoform CRA_f [Rattus norvegicus]
Length = 343
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T Q GYGFV++ P A+KA+ +L +Q + K P+ NLY+S LP
Sbjct: 92 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPI 144
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G +I++RIL D G ++ + E+
Sbjct: 145 SMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEK 187
Score = 38.9 bits (89), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
E + NLY+ GLP + Q+L L PYG+I++++ + D
Sbjct: 51 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILD 90
>gi|348588905|ref|XP_003480205.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein
3-like isoform 3 [Cavia porcellus]
Length = 414
Score = 65.5 bits (158), Expect = 7e-09, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T Q GYGFV++ P A+KA+ +L +Q + K P+ NLY+S LP
Sbjct: 92 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPI 144
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G +I++RIL D G ++ + E+
Sbjct: 145 SMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEK 187
Score = 38.5 bits (88), Expect = 1.0, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
E + NLY+ GLP + Q+L L PYG+I++++ + D
Sbjct: 51 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILD 90
>gi|149018307|gb|EDL76948.1| rCG25178, isoform CRA_c [Rattus norvegicus]
Length = 360
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T Q GYGFV++ P A+KA+ +L +Q + K P+ NLY+S LP
Sbjct: 92 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPI 144
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G +I++RIL D G ++ + E+
Sbjct: 145 SMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEK 187
Score = 38.9 bits (89), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
E + NLY+ GLP + Q+L L PYG+I++++ + D
Sbjct: 51 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILD 90
>gi|270011336|gb|EFA07784.1| hypothetical protein TcasGA2_TC005341 [Tribolium castaneum]
Length = 501
Score = 65.5 bits (158), Expect = 7e-09, Method: Composition-based stats.
Identities = 31/103 (30%), Positives = 57/103 (55%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P AE A+ L +Q + K P+ NLY++ LP
Sbjct: 198 TTNKCKGYGFVDFESPSAAEGAVKALTANNIQAQMAKQQEQDPT-------NLYIANLPS 250
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
H + +L++L S YG++I++RIL D++ G ++ + +++
Sbjct: 251 HFKESDLDNLLSKYGQVISTRILRDSMGISKGVGFARMENKDK 293
>gi|390465724|ref|XP_002750686.2| PREDICTED: polyadenylate-binding protein 4 [Callithrix jacchus]
Length = 656
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 61/100 (61%), Gaps = 7/100 (7%)
Query: 25 ICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGAN 82
+C +I T +SLGY +VN+ +P DAE+A++T+N ++ K I++ +++ PS N
Sbjct: 42 VCRDMI-TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGN 100
Query: 83 LYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+++ L K + + L FS +G I++ +++CD ENG
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 18/110 (16%)
Query: 25 ICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE-------- 76
+ V +S G+GFV+Y + EDA KA+ +NG + K I V A+ E
Sbjct: 220 VKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRK 279
Query: 77 ----------SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
+G NLY+ L + ++L FSP+G I +++++ ++
Sbjct: 280 FEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED 329
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 53/106 (50%), Gaps = 12/106 (11%)
Query: 26 CVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVS--YARPSSESIKGA-- 81
C + S GY FV++ E A+KAI +NG+ L ++ + V +R E+ GA
Sbjct: 128 CKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKA 187
Query: 82 ----NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGK 123
N+Y+ + + + L+ LF +G+ ++ +++ D NGK
Sbjct: 188 KEFTNVYIKNFGEEVDDESLKELFIQFGKTLSVKVMRD----PNGK 229
Score = 35.4 bits (80), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + +K + V+ A+ E
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|149018308|gb|EDL76949.1| rCG25178, isoform CRA_d [Rattus norvegicus]
Length = 389
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T Q GYGFV++ P A+KA+ +L +Q + K P+ NLY+S LP
Sbjct: 92 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPI 144
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G +I++RIL D G ++ + E+
Sbjct: 145 SMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEK 187
Score = 38.9 bits (89), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
E + NLY+ GLP + Q+L L PYG+I++++ + D
Sbjct: 51 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILD 90
>gi|148677318|gb|EDL09265.1| RNA binding motif, single stranded interacting protein, isoform
CRA_d [Mus musculus]
Length = 343
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T Q GYGFV++ P A+KA+ +L +Q + K P+ NLY+S LP
Sbjct: 92 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPI 144
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G +I++RIL D G ++ + E+
Sbjct: 145 SMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEK 187
Score = 38.9 bits (89), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
E + NLY+ GLP + Q+L L PYG+I++++ + D
Sbjct: 51 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILD 90
>gi|47228666|emb|CAG07398.1| unnamed protein product [Tetraodon nigroviridis]
Length = 466
Score = 65.5 bits (158), Expect = 8e-09, Method: Composition-based stats.
Identities = 34/103 (33%), Positives = 55/103 (53%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA+ L +Q + K P+ NLY+S LP
Sbjct: 69 TTNKCKGYGFVDFDSPTSAQKAVTALKAGGVQAQMAKQQEQDPT-------NLYISNLPL 121
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+ + I++RIL D T G ++ + E+
Sbjct: 122 SMDEQELENMLKPFSQAISTRILRDANGTSRGVGFARMESTEK 164
Score = 35.8 bits (81), Expect = 5.8, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 26/49 (53%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKY 124
E + NLY+ GL + Q+L L PYG+I++++ + D + Y
Sbjct: 28 EQLSKTNLYIRGLHPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGY 76
>gi|149018305|gb|EDL76946.1| rCG25178, isoform CRA_a [Rattus norvegicus]
Length = 405
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 55/102 (53%), Gaps = 7/102 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T Q GYGFV++ P A+KA+ +L +Q + K P+ NLY+S LP
Sbjct: 110 TNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPIS 162
Query: 92 MSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G +I++RIL D G ++ + E+
Sbjct: 163 MDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEK 204
Score = 38.5 bits (88), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
E + NLY+ GLP + Q+L L PYG+I++++ + D
Sbjct: 68 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILD 107
>gi|440913528|gb|ELR62976.1| Polyadenylate-binding protein 4, partial [Bos grunniens mutus]
Length = 196
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 60/100 (60%), Gaps = 7/100 (7%)
Query: 25 ICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGAN 82
+C +I T +SLGY +VN+ +P DAE+A++T+N ++ K I++ +++ PS N
Sbjct: 33 VCRDMI-TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGN 91
Query: 83 LYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+++ L + + L FS +G I++ +++CD ENG
Sbjct: 92 VFIKNLDNSIDDKALYDTFSAFGNILSCKVVCD----ENG 127
>gi|427786813|gb|JAA58858.1| Putative rna-binding protein elav/hu rrm superfamily [Rhipicephalus
pulchellus]
Length = 341
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 56/100 (56%), Gaps = 7/100 (7%)
Query: 37 GYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQQE 96
GYGFV++ P AEKA+ L +Q + K P+ NLY++ LP +M++Q+
Sbjct: 112 GYGFVDFESPLAAEKAVKALQAQGVQAQMAKQQEQDPT-------NLYMANLPLYMAEQD 164
Query: 97 LESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLRR 136
LE L +G +I++RIL DN A G ++ + +E+ +
Sbjct: 165 LEQLLQAHGAVISTRILRDNSAQSRGVGFARMESKEKCEQ 204
>gi|327261782|ref|XP_003215707.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein
3-like [Anolis carolinensis]
Length = 419
Score = 65.1 bits (157), Expect = 8e-09, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T Q GYGFV++ P A+KA+ +L +Q + K P+ NLY+S LP
Sbjct: 96 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPI 148
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G +I++RIL D G ++ + E+
Sbjct: 149 SMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEK 191
Score = 38.1 bits (87), Expect = 1.1, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
E + NLY+ GLP + Q+L L PYG+I++++ + D
Sbjct: 55 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILD 94
>gi|440297981|gb|ELP90622.1| nucleolysin TIA-1, putative [Entamoeba invadens IP1]
Length = 305
Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 59/109 (54%), Gaps = 17/109 (15%)
Query: 21 SDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPS---SES 77
SDA + + S +S GYGFV + R EDAE A+ +NG ++Q +T+KV++ + +E+
Sbjct: 152 SDARVLRYSQS-GKSQGYGFVTFIRKEDAETAMQMMNGEKIQGRTVKVNWGTATQKPTET 210
Query: 78 IK-------------GANLYVSGLPKHMSQQELESLFSPYGRIITSRIL 113
+K N+YV G+PK + + LF +G II +I+
Sbjct: 211 VKRGFDEISRETSNTNNNVYVGGIPKETEESTMRKLFGDFGEIIDLKIM 259
Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 38 YGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGA-NLYVSGLPKHMSQQE 96
YGF+ + AE A +NG + K +KV++ S KG+ L+V GL ++ +
Sbjct: 81 YGFIEFIDHTTAEFAKENMNGRLVYGKELKVNWTHDSQSDAKGSFKLFVGGLHTEVTNEI 140
Query: 97 LESLFSPYGRIITSRIL 113
L F+ +GR+ +R+L
Sbjct: 141 LYQNFAKFGRVSDARVL 157
>gi|287324845|ref|NP_001165595.1| RNA-binding motif, single-stranded-interacting protein 3 isoform 5
[Mus musculus]
gi|26328767|dbj|BAC28122.1| unnamed protein product [Mus musculus]
Length = 402
Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T Q GYGFV++ P A+KA+ +L +Q + K P+ NLY+S LP
Sbjct: 92 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPI 144
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G +I++RIL D G ++ + E+
Sbjct: 145 SMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEK 187
Score = 38.9 bits (89), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
E + NLY+ GLP + Q+L L PYG+I++++ + D
Sbjct: 51 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILD 90
>gi|344238365|gb|EGV94468.1| RNA-binding motif, single-stranded-interacting protein 3
[Cricetulus griseus]
Length = 381
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T Q GYGFV++ P A+KA+ +L +Q + K P+ NLY+S LP
Sbjct: 58 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPI 110
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G +I++RIL D G ++ + E+
Sbjct: 111 SMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEK 153
Score = 38.9 bits (89), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
E + NLY+ GLP + Q+L L PYG+I++++ + D
Sbjct: 17 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILD 56
>gi|296220517|ref|XP_002756339.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein
1-like [Callithrix jacchus]
Length = 400
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 58/103 (56%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA++ L +Q + K P+ NL +S LP
Sbjct: 95 TTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPT-------NLCISNLPL 147
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G++I++RIL D+ T G ++ + E+
Sbjct: 148 SMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEK 190
Score = 42.4 bits (98), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 26/40 (65%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+ I NLY+ GLP H + Q+L L PYG+I++++ + D
Sbjct: 54 DQISEMNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILD 93
>gi|189240575|ref|XP_974237.2| PREDICTED: similar to single-stranded DNA-binding protein mssp-1
[Tribolium castaneum]
Length = 524
Score = 65.1 bits (157), Expect = 9e-09, Method: Composition-based stats.
Identities = 31/103 (30%), Positives = 57/103 (55%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P AE A+ L +Q + K P+ NLY++ LP
Sbjct: 215 TTNKCKGYGFVDFESPSAAEGAVKALTANNIQAQMAKQQEQDPT-------NLYIANLPS 267
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
H + +L++L S YG++I++RIL D++ G ++ + +++
Sbjct: 268 HFKESDLDNLLSKYGQVISTRILRDSMGISKGVGFARMENKDK 310
>gi|213513165|ref|NP_064692.2| RNA-binding motif, single-stranded-interacting protein 1 isoform 3
[Mus musculus]
gi|55976561|sp|Q91W59.1|RBMS1_MOUSE RecName: Full=RNA-binding motif, single-stranded-interacting
protein 1; AltName: Full=Single-stranded DNA-binding
protein MSSP-1
gi|74151115|dbj|BAE27681.1| unnamed protein product [Mus musculus]
Length = 403
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 58/103 (56%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA++ L +Q + K P+ NLY+S LP
Sbjct: 98 ATNKCKGYGFVDFDSPAAAQKAVSALKANGVQAQMAKQQEQDPT-------NLYISNLPL 150
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G++I++R+L D+ G ++ + E+
Sbjct: 151 SMDEQELENMLKPFGQVISTRVLRDSSGASRGVGFARMESTEK 193
Score = 39.3 bits (90), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYY 125
+ + NLY+ GLP + + Q+L L PYG+I++++ + D AT K Y
Sbjct: 57 DQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDK-ATNKCKGY 105
>gi|327264367|ref|XP_003216985.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein
2-like [Anolis carolinensis]
Length = 380
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA+ L +Q + K P+ NLY+S LP
Sbjct: 70 TTNKCKGYGFVDFDSPTAAQKAVTALKASGVQAQMAKQQEQDPT-------NLYLSNLPL 122
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M + ELES+ P+G++I++RIL D T G ++ + E+
Sbjct: 123 GMDEAELESMLKPFGQVISTRILRDASGTSRGVGFARMESTEK 165
>gi|354467697|ref|XP_003496305.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 3
isoform 2 [Cricetulus griseus]
Length = 402
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T Q GYGFV++ P A+KA+ +L +Q + K P+ NLY+S LP
Sbjct: 92 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPI 144
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G +I++RIL D G ++ + E+
Sbjct: 145 SMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEK 187
Score = 38.9 bits (89), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
E + NLY+ GLP + Q+L L PYG+I++++ + D
Sbjct: 51 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILD 90
>gi|444705714|gb|ELW47107.1| Integrin beta-6 [Tupaia chinensis]
Length = 1357
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 50/85 (58%), Gaps = 7/85 (8%)
Query: 38 YGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQQEL 97
YGFV++ P A+KA++ L +Q + K P+ NLY+S LP M +QEL
Sbjct: 16 YGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPT-------NLYISNLPLSMDEQEL 68
Query: 98 ESLFSPYGRIITSRILCDNLATENG 122
E++ P+G++I++RIL D+ T G
Sbjct: 69 ENMLKPFGQVISTRILRDSSGTSRG 93
>gi|251765113|sp|B4MM23.2|SHEP_DROWI RecName: Full=Protein alan shepard
Length = 581
Score = 65.1 bits (157), Expect = 9e-09, Method: Composition-based stats.
Identities = 32/103 (31%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ +P AE A+ L +Q + K P+ NLY++ LP
Sbjct: 273 TTNKCKGYGFVDFEQPAYAENAVKGLQAKGVQAQMAKQQEQDPT-------NLYIANLPP 325
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
H + +LE++ S YG+++++RIL D G ++ + RE+
Sbjct: 326 HFKETDLEAMLSKYGQVVSTRILRDQQMNSKGVGFARMESREK 368
>gi|213513185|ref|NP_001135403.1| RNA-binding motif, single-stranded-interacting protein 1 isoform 2
[Mus musculus]
Length = 401
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 58/103 (56%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA++ L +Q + K P+ NLY+S LP
Sbjct: 96 ATNKCKGYGFVDFDSPAAAQKAVSALKANGVQAQMAKQQEQDPT-------NLYISNLPL 148
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G++I++R+L D+ G ++ + E+
Sbjct: 149 SMDEQELENMLKPFGQVISTRVLRDSSGASRGVGFARMESTEK 191
Score = 39.3 bits (90), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYY 125
+ + NLY+ GLP + + Q+L L PYG+I++++ + D AT K Y
Sbjct: 55 DQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDK-ATNKCKGY 103
>gi|148677321|gb|EDL09268.1| RNA binding motif, single stranded interacting protein, isoform
CRA_g [Mus musculus]
Length = 386
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T Q GYGFV++ P A+KA+ +L +Q + K P+ NLY+S LP
Sbjct: 92 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPI 144
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G +I++RIL D G ++ + E+
Sbjct: 145 SMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEK 187
Score = 38.9 bits (89), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
E + NLY+ GLP + Q+L L PYG+I++++ + D
Sbjct: 51 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILD 90
>gi|287324984|ref|NP_001165597.1| RNA-binding motif, single-stranded-interacting protein 3 isoform 6
[Mus musculus]
gi|26334205|dbj|BAC30820.1| unnamed protein product [Mus musculus]
Length = 386
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T Q GYGFV++ P A+KA+ +L +Q + K P+ NLY+S LP
Sbjct: 92 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPI 144
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G +I++RIL D G ++ + E+
Sbjct: 145 SMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEK 187
Score = 38.9 bits (89), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
E + NLY+ GLP + Q+L L PYG+I++++ + D
Sbjct: 51 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILD 90
>gi|242002762|ref|XP_002436024.1| RNA-binding protein precursor, putative [Ixodes scapularis]
gi|215499360|gb|EEC08854.1| RNA-binding protein precursor, putative [Ixodes scapularis]
Length = 201
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 57/103 (55%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
T + GYGFV++ P AEKA+ L +Q + K P+ NLY++ LP
Sbjct: 50 DTNKCKGYGFVDFESPLAAEKAVKALQAQGVQAQMAKQQEQDPT-------NLYIANLPL 102
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
+M +Q+LE + S +G +I++RIL DN + G ++ + +E+
Sbjct: 103 YMVEQDLEQMLSNHGNVISTRILRDNNSQSRGVGFARMESKEK 145
>gi|195427966|ref|XP_002062046.1| GK17327 [Drosophila willistoni]
gi|194158131|gb|EDW73032.1| GK17327 [Drosophila willistoni]
Length = 603
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 32/103 (31%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ +P AE A+ L +Q + K P+ NLY++ LP
Sbjct: 295 TTNKCKGYGFVDFEQPAYAENAVKGLQAKGVQAQMAKQQEQDPT-------NLYIANLPP 347
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
H + +LE++ S YG+++++RIL D G ++ + RE+
Sbjct: 348 HFKETDLEAMLSKYGQVVSTRILRDQQMNSKGVGFARMESREK 390
>gi|37930176|gb|AAP75556.1| RNA binding motif single stranded interacting protein 3 isoform
transcript variant DD23-S [Homo sapiens]
Length = 419
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T Q GYGFV++ P A+KA+ +L +Q + K P+ NLY+S LP
Sbjct: 96 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPI 148
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G +I++RIL D G ++ + E+
Sbjct: 149 SMDEQELENMLKPFGPVISTRILRDANGVSRGVGFARMESTEK 191
Score = 39.7 bits (91), Expect = 0.46, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
E + NLY+ GLP + Q+L L PYG+I++++ L D
Sbjct: 55 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKALLD 94
>gi|27497553|gb|AAO13018.1| RNA-binding protein HU [Oncorhynchus mykiss]
Length = 77
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/37 (81%), Positives = 32/37 (86%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKV 68
T QSLGYGFVNY P DA+KAINTLNGL+LQ KTIKV
Sbjct: 41 TGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKV 77
>gi|354467699|ref|XP_003496306.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 3
isoform 3 [Cricetulus griseus]
Length = 386
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T Q GYGFV++ P A+KA+ +L +Q + K P+ NLY+S LP
Sbjct: 92 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPI 144
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G +I++RIL D G ++ + E+
Sbjct: 145 SMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEK 187
Score = 38.9 bits (89), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
E + NLY+ GLP + Q+L L PYG+I++++ + D
Sbjct: 51 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILD 90
>gi|226496737|ref|NP_001151785.1| LOC100285420 [Zea mays]
gi|195649671|gb|ACG44303.1| polyadenylate-binding protein 2 [Zea mays]
gi|414586484|tpg|DAA37055.1| TPA: polyadenylate-binding protein 2 [Zea mays]
Length = 660
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 53/95 (55%), Gaps = 2/95 (2%)
Query: 30 ISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSG 87
+++ +SLGY +VN++ P DA +A+ LN L NK I+V Y+ PSS AN+++
Sbjct: 75 VTSRRSLGYAYVNFNNPLDAARALEVLNFAPLNNKPIRVMYSNRDPSSRRSGSANIFIKN 134
Query: 88 LPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
L K + + L FS +G I++ ++ D G
Sbjct: 135 LDKMIDNKSLHETFSSFGTILSCKVAMDEGGQSKG 169
Score = 53.1 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 52/118 (44%), Gaps = 18/118 (15%)
Query: 33 AQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE---------------- 76
+S +GF+N+ P+ A +A+ LNG ++ +K V A+ SE
Sbjct: 256 GKSRCFGFINFENPDAASRAVQELNGKKINDKEWYVGRAQKKSEREMELKRRFEQILKDA 315
Query: 77 --SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRE 132
+G NLY+ L + +L LFS +G+I + +++ D G + RE
Sbjct: 316 ADKYQGLNLYLKNLDDSIGDDQLRELFSNFGKITSCKVMRDQNGLSKGSGFVAFSTRE 373
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 60/117 (51%), Gaps = 10/117 (8%)
Query: 7 LNKLFTYEKVHLGFSD----AEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQ 62
L+K+ + +H FS V + QS G+GFV Y + E A+ AI +LNG+ +
Sbjct: 135 LDKMIDNKSLHETFSSFGTILSCKVAMDEGGQSKGFGFVQYEKEEAAQNAIKSLNGMLIN 194
Query: 63 NKTIKVS-YARP-----SSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRIL 113
+K + V + R S + K N++V L + ++++L +F YG I ++ ++
Sbjct: 195 DKPVFVGPFLRKQERDHSFDKTKFNNVFVKNLSESTTKEDLLKIFGEYGNITSAVVM 251
>gi|427786805|gb|JAA58854.1| Putative rna-binding protein elav/hu rrm superfamily [Rhipicephalus
pulchellus]
Length = 402
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 56/100 (56%), Gaps = 7/100 (7%)
Query: 37 GYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQQE 96
GYGFV++ P AEKA+ L +Q + K P+ NLY++ LP +M++Q+
Sbjct: 112 GYGFVDFESPLAAEKAVKALQAQGVQAQMAKQQEQDPT-------NLYMANLPLYMAEQD 164
Query: 97 LESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLRR 136
LE L +G +I++RIL DN A G ++ + +E+ +
Sbjct: 165 LEQLLQAHGAVISTRILRDNSAQSRGVGFARMESKEKCEQ 204
>gi|348507665|ref|XP_003441376.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein
2-like [Oreochromis niloticus]
Length = 391
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA+ L +Q + K P+ NLY+S LP
Sbjct: 86 TTNKCKGYGFVDFDSPAAAQKAVTALKSTGVQAQMAKQQEQDPT-------NLYISNLPV 138
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELES+ +G++I++RIL D T G ++ + E+
Sbjct: 139 SMDEQELESMLKSFGQVISTRILRDANGTSRGVGFARMESTEK 181
>gi|41388837|gb|AAH65540.1| PABPC4 protein [Homo sapiens]
Length = 631
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 61/100 (61%), Gaps = 7/100 (7%)
Query: 25 ICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGAN 82
+C +I T +SLGY +VN+ +P DAE+A++T+N ++ K I++ +++ PS N
Sbjct: 42 VCRDMI-TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGN 100
Query: 83 LYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+++ L K + + L FS +G I++ +++CD ENG
Sbjct: 101 VFIKNLDKSIDNKVLYDTFSAFGNILSCKVVCD----ENG 136
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 18/110 (16%)
Query: 25 ICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE-------- 76
+ V +S G+GFV+Y + EDA KA+ +NG + K I V A+ E
Sbjct: 220 VKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRK 279
Query: 77 ----------SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
+G NLY+ L + ++L FSP+G I +++++ ++
Sbjct: 280 FEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED 329
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 54/106 (50%), Gaps = 12/106 (11%)
Query: 26 CVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVS--YARPSSESIKGA-- 81
C + S GY FV++ E A+KAI +NG+ L ++ + V +R E+ GA
Sbjct: 128 CKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKA 187
Query: 82 ----NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGK 123
N+Y+ + + + L+ LFS +G+ ++ +++ D NGK
Sbjct: 188 KEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD----PNGK 229
Score = 35.0 bits (79), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + +K + V+ A+ E
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|74216579|dbj|BAE37728.1| unnamed protein product [Mus musculus]
Length = 400
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 53/92 (57%), Gaps = 7/92 (7%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA++ L +Q + K P+ NLY+S LP
Sbjct: 178 ATNKCKGYGFVDFDSPAAAQKAVSALKANGVQAQMAKQQEQDPT-------NLYISNLPL 230
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENG 122
M +QELE++ P+G++I++R+L D+ G
Sbjct: 231 SMDEQELENMLKPFGQVISTRVLRDSSGASRG 262
Score = 39.7 bits (91), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYY 125
+ + NLY+ GLP + + Q+L L PYG+I++++ + D AT K Y
Sbjct: 137 DQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDK-ATNKCKGY 185
>gi|76154205|gb|AAX25698.2| SJCHGC08696 protein [Schistosoma japonicum]
Length = 242
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 48/86 (55%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
++ S G+GF Y A KAI NG R+ +K +KVS A+ + +NLYV P
Sbjct: 43 NSGSSFGFGFCEYEDSCSAHKAITRFNGYRIADKVLKVSLAKLQGRLCQSSNLYVKNFPP 102
Query: 91 HMSQQELESLFSPYGRIITSRILCDN 116
+++ +L + F +GR+I RIL D+
Sbjct: 103 TLTEDDLAAEFGQFGRVIQCRILRDH 128
>gi|256075089|ref|XP_002573853.1| polyadenylate binding protein [Schistosoma mansoni]
gi|360044950|emb|CCD82498.1| putative polyadenylate binding protein [Schistosoma mansoni]
Length = 688
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 61/103 (59%), Gaps = 7/103 (6%)
Query: 23 AEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKG 80
A +C L +T SLGYG+VN+ P+ AE+A+ LN L + I++ +++ PS
Sbjct: 42 ARVCRDL-ATRHSLGYGYVNFEDPKHAEQALEVLNYESLMGRPIRIMWSQRDPSLRKSGK 100
Query: 81 ANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGK 123
N+++ L K + Q+EL FS +GRI++ +I+ D ENG+
Sbjct: 101 GNIFIKNLDKSIEQKELYDTFSFFGRILSCKIVMD----ENGQ 139
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 54/102 (52%), Gaps = 6/102 (5%)
Query: 27 VFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE------SIKG 80
+ + QS GYGFV++ + E AE+AI +N + ++++ + V P +E +K
Sbjct: 132 IVMDENGQSKGYGFVHFEKEECAERAIEKINNMIIRDRVVYVGKFIPKTERKSQARKVKF 191
Query: 81 ANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
NLY+ P ++L+ +F+ +G I ++ ++ D+ G
Sbjct: 192 NNLYIKNFPPETDNEKLKEMFNEFGEIKSACVMKDSEGKSKG 233
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 19/109 (17%)
Query: 26 CVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSES-------- 77
CV S +S G+GFV + P+ AE A+ T++G ++ + + + A+ E
Sbjct: 222 CVMKDSEGKSKGFGFVCFLDPDHAENAVKTMHGKEIEGRALYCARAQRKEERQEELKQRL 281
Query: 78 -----------IKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+ NLYV L ++ + LE FS +G I +++++ D
Sbjct: 282 EKQRAERQSSYMLNVNLYVKNLDDNIDDKRLEEAFSVHGSITSAKVMKD 330
>gi|225706204|gb|ACO08948.1| RNA-binding motif, single-stranded-interacting protein 1 [Osmerus
mordax]
Length = 377
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 57/103 (55%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA+ L +Q + K P+ NLY+S LP
Sbjct: 88 TTNKCKGYGFVDFDSPAAAQKAVTALKSSGVQAQMAKQQEQDPT-------NLYISNLPL 140
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G++I++R+L D+ G ++ + E+
Sbjct: 141 SMDEQELEAMLKPFGQVISTRVLRDSNGGSRGVGFARMESPEK 183
Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
E + NLY+ GLP + +L L PYG+I++++ + D
Sbjct: 47 EQLSKTNLYIRGLPPPTTDHDLVKLCQPYGKIVSTKAILD 86
>gi|242076392|ref|XP_002448132.1| hypothetical protein SORBIDRAFT_06g021850 [Sorghum bicolor]
gi|241939315|gb|EES12460.1| hypothetical protein SORBIDRAFT_06g021850 [Sorghum bicolor]
Length = 664
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 52/95 (54%), Gaps = 2/95 (2%)
Query: 30 ISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSG 87
+++ +SLGY +VN+ P DA +A+ LN L NK I+V Y+ PSS AN+++
Sbjct: 81 VTSRRSLGYAYVNFSNPLDAARALEVLNFAVLNNKPIRVMYSNRDPSSRRSGSANIFIKN 140
Query: 88 LPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
L K + + L FS +G I++ ++ D G
Sbjct: 141 LDKTIDNKTLHETFSSFGTILSCKVAMDEAGQSKG 175
Score = 52.4 bits (124), Expect = 5e-05, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 52/118 (44%), Gaps = 18/118 (15%)
Query: 33 AQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE---------------- 76
+S +GF+N+ P+ A +A+ LNG ++ +K V A+ SE
Sbjct: 262 GKSRCFGFINFENPDAASRAVQELNGKKINDKEWYVGRAQKKSEREMELKRRFEQSLKDA 321
Query: 77 --SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRE 132
+G NLY+ L + +L LFS +G+I + +++ D G + RE
Sbjct: 322 ADKYQGLNLYLKNLDDSIGDDQLRELFSNFGKITSYKVMRDQNGLSKGSGFVAFSTRE 379
Score = 48.9 bits (115), Expect = 7e-04, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 51/93 (54%), Gaps = 6/93 (6%)
Query: 27 VFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVS-YARP-----SSESIKG 80
V + QS G+GFV Y + E A+ AI +LNG+ + +K + V + R S + K
Sbjct: 165 VAMDEAGQSKGFGFVQYEKEEAAQNAIKSLNGMLINDKPVFVGPFLRKQERDHSFDKTKF 224
Query: 81 ANLYVSGLPKHMSQQELESLFSPYGRIITSRIL 113
N++V L + ++++L +F YG I ++ ++
Sbjct: 225 NNVFVKNLSESTTKEDLLKVFGEYGSITSAVVM 257
>gi|356572504|ref|XP_003554408.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Glycine max]
Length = 636
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 56/106 (52%), Gaps = 18/106 (16%)
Query: 35 SLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE------------------ 76
S G+GFVNY P+DA+KA+ +NG +L +K + V+ A+ +E
Sbjct: 230 SKGFGFVNYDNPDDAKKAMEAMNGSQLGSKILYVARAQKKAEREQILHHQFEEKQKEQIL 289
Query: 77 SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
KG+N+YV + H+S +EL FS G I +++I+ D+ G
Sbjct: 290 KYKGSNIYVKNIDDHVSDEELRDHFSACGTITSAKIMRDDKGISKG 335
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 57/95 (60%), Gaps = 6/95 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGA--NLYVSGL 88
ST +SL YG++N+ P+DA +AI N L K ++V ++R ++ K A NL+V L
Sbjct: 48 STGKSLCYGYLNFVSPQDAIRAIELKNNSTLNGKAMRVMWSRRDPDARKSAIGNLFVKNL 107
Query: 89 PKHMSQQELESLFSPYGRIITSRILCDNLATENGK 123
P+ + L+ +F YG I++S+++ +E+GK
Sbjct: 108 PESIDNAGLQDIFKKYGNILSSKVVT----SEDGK 138
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 6/95 (6%)
Query: 34 QSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKV-SYARPSSESIKG-----ANLYVSG 87
+S GYGFV + E ++ AI LNG + +K + V + + S + G NLY+
Sbjct: 138 KSKGYGFVQFESEESSKVAIEKLNGYTVADKELYVGKFVKKSDRILPGPDARYTNLYMKN 197
Query: 88 LPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
L +S+ L+ FS +G+I++ I DN G
Sbjct: 198 LDLDVSEATLQEKFSSFGKIVSLVIAKDNNGMSKG 232
Score = 36.2 bits (82), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 35 SLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR 72
S G+GFV + PE+A KA+NT +G K + V+ A+
Sbjct: 333 SKGFGFVCFSTPEEANKAVNTFHGFMYHGKPLYVALAQ 370
>gi|410919457|ref|XP_003973201.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein
2-like [Takifugu rubripes]
Length = 398
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA+ L +Q + K P+ NLY+S LP
Sbjct: 94 TTNKCKGYGFVDFDSPAAAQKAVTALKSTGVQAQMAKQQEQDPT-------NLYISNLPV 146
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELES+ +G++I++RIL D T G ++ + E+
Sbjct: 147 SMDEQELESMLKSFGQVISTRILRDANGTSRGVGFARMESTEK 189
>gi|256075085|ref|XP_002573851.1| polyadenylate binding protein [Schistosoma mansoni]
gi|360044948|emb|CCD82496.1| putative polyadenylate binding protein [Schistosoma mansoni]
Length = 726
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 61/103 (59%), Gaps = 7/103 (6%)
Query: 23 AEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKG 80
A +C L +T SLGYG+VN+ P+ AE+A+ LN L + I++ +++ PS
Sbjct: 42 ARVCRDL-ATRHSLGYGYVNFEDPKHAEQALEVLNYESLMGRPIRIMWSQRDPSLRKSGK 100
Query: 81 ANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGK 123
N+++ L K + Q+EL FS +GRI++ +I+ D ENG+
Sbjct: 101 GNIFIKNLDKSIEQKELYDTFSFFGRILSCKIVMD----ENGQ 139
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 54/102 (52%), Gaps = 6/102 (5%)
Query: 27 VFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE------SIKG 80
+ + QS GYGFV++ + E AE+AI +N + ++++ + V P +E +K
Sbjct: 132 IVMDENGQSKGYGFVHFEKEECAERAIEKINNMIIRDRVVYVGKFIPKTERKSQARKVKF 191
Query: 81 ANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
NLY+ P ++L+ +F+ +G I ++ ++ D+ G
Sbjct: 192 NNLYIKNFPPETDNEKLKEMFNEFGEIKSACVMKDSEGKSKG 233
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 19/109 (17%)
Query: 26 CVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSES-------- 77
CV S +S G+GFV + P+ AE A+ T++G ++ + + + A+ E
Sbjct: 222 CVMKDSEGKSKGFGFVCFLDPDHAENAVKTMHGKEIEGRALYCARAQRKEERQEELKQRL 281
Query: 78 -----------IKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+ NLYV L ++ + LE FS +G I +++++ D
Sbjct: 282 EKQRAERQSSYMLNVNLYVKNLDDNIDDKRLEEAFSVHGSITSAKVMKD 330
>gi|301756358|ref|XP_002914026.1| PREDICTED: polyadenylate-binding protein 1-like [Ailuropoda
melanoleuca]
Length = 636
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VNY +P D+E+A++T+N ++ K +++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNYQQPRDSERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 18/102 (17%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE--------------- 76
+ +S G+GFV++ R EDA+KA++ +NG L K I V A+ E
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQD 286
Query: 77 ---SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+G NLYV L + + L FSP+G I +++++ +
Sbjct: 287 RITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME 328
Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 8/112 (7%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GYGFV++ E AE+AI +NG+ L ++ + V +R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ GA N+Y+ + M + L+ LF +G ++ +++ D G
Sbjct: 181 AELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKG 232
Score = 35.8 bits (81), Expect = 6.2, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + K + V+ A+ E
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 373
>gi|149608633|ref|XP_001515603.1| PREDICTED: polyadenylate-binding protein 4 [Ornithorhynchus
anatinus]
Length = 630
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K I++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/102 (25%), Positives = 50/102 (49%), Gaps = 18/102 (17%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE--------------- 76
+ +S G+GFV++ + EDA +A+ +NG + K + V A+ E
Sbjct: 227 SGKSKGFGFVSFEKHEDANQAVEDMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQE 286
Query: 77 ---SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+G NLY+ L + ++L FSP+G I +++++ +
Sbjct: 287 RISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE 328
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 53/112 (47%), Gaps = 8/112 (7%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GY FV++ + A++AI +NG+ L ++ + V +R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ GA N+Y+ M + L+ LFS YG+ ++ +++ D G
Sbjct: 181 AELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPSGKSKG 232
Score = 36.2 bits (82), Expect = 4.5, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + +K + V+ A+ E
Sbjct: 326 MLEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|444706907|gb|ELW48224.1| Polyadenylate-binding protein 4 [Tupaia chinensis]
Length = 692
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K I++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 18/103 (17%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE--------------- 76
T +S G+GFV+Y + EDA KA+ +NG + K I V A+ E
Sbjct: 227 TGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQE 286
Query: 77 ---SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
+G NLY+ L + ++L FSP+G I +++++ ++
Sbjct: 287 RISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED 329
Score = 48.9 bits (115), Expect = 6e-04, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 8/112 (7%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GY FV++ E A+KAI +NG+ L ++ + V +R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ GA N+Y+ + + + L+ LFS +G+ ++ +++ D G
Sbjct: 181 AELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPTGKSKG 232
Score = 36.2 bits (82), Expect = 4.7, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + +K + V+ A+ E
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|256075087|ref|XP_002573852.1| polyadenylate binding protein [Schistosoma mansoni]
gi|360044949|emb|CCD82497.1| putative polyadenylate binding protein [Schistosoma mansoni]
Length = 724
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 61/103 (59%), Gaps = 7/103 (6%)
Query: 23 AEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKG 80
A +C L +T SLGYG+VN+ P+ AE+A+ LN L + I++ +++ PS
Sbjct: 42 ARVCRDL-ATRHSLGYGYVNFEDPKHAEQALEVLNYESLMGRPIRIMWSQRDPSLRKSGK 100
Query: 81 ANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGK 123
N+++ L K + Q+EL FS +GRI++ +I+ D ENG+
Sbjct: 101 GNIFIKNLDKSIEQKELYDTFSFFGRILSCKIVMD----ENGQ 139
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 54/102 (52%), Gaps = 6/102 (5%)
Query: 27 VFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE------SIKG 80
+ + QS GYGFV++ + E AE+AI +N + ++++ + V P +E +K
Sbjct: 132 IVMDENGQSKGYGFVHFEKEECAERAIEKINNMIIRDRVVYVGKFIPKTERKSQARKVKF 191
Query: 81 ANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
NLY+ P ++L+ +F+ +G I ++ ++ D+ G
Sbjct: 192 NNLYIKNFPPETDNEKLKEMFNEFGEIKSACVMKDSEGKSKG 233
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 19/109 (17%)
Query: 26 CVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSES-------- 77
CV S +S G+GFV + P+ AE A+ T++G ++ + + + A+ E
Sbjct: 222 CVMKDSEGKSKGFGFVCFLDPDHAENAVKTMHGKEIEGRALYCARAQRKEERQEELKQRL 281
Query: 78 -----------IKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+ NLYV L ++ + LE FS +G I +++++ D
Sbjct: 282 EKQRAERQSSYMLNVNLYVKNLDDNIDDKRLEEAFSVHGSITSAKVMKD 330
>gi|328851168|gb|EGG00325.1| hypothetical protein MELLADRAFT_28015 [Melampsora larici-populina
98AG31]
Length = 223
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 57/103 (55%), Gaps = 3/103 (2%)
Query: 22 DAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKV--SYARPSSESIK 79
+A +C+ I T + GYG+V+Y PE+A+ A+ N + L+ K I+V SY+ E
Sbjct: 28 NARVCIDRI-TQKPRGYGYVSYATPEEADLALREFNHINLKGKPIRVMRSYSGKPKEFPS 86
Query: 80 GANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
ANL++ LPK + L F +G+I++S+I D L G
Sbjct: 87 EANLFIKNLPKSFTPINLHDSFERFGKILSSKISFDQLGNSKG 129
Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 55/121 (45%), Gaps = 15/121 (12%)
Query: 7 LNKLFTYEKVHLGFSD-AEICVFLISTAQ---SLGYGFVNYHRPEDAEKAINTLNGLRL- 61
L K FT +H F +I IS Q S GYG++ + P+D+ +AI N +
Sbjct: 95 LPKSFTPINLHDSFERFGKILSSKISFDQLGNSKGYGYIQFENPKDSNEAILNSNDFQFD 154
Query: 62 -----QNKTIK----VSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRI 112
++K +K SY +P K N++ LP +++ S +G+ ITS I
Sbjct: 155 IKDEEESKNMKKLKVTSYVKPEDRKPKFTNVFFRNLPLDFTEESFSKYASEFGK-ITSLI 213
Query: 113 L 113
L
Sbjct: 214 L 214
>gi|47229541|emb|CAG06737.1| unnamed protein product [Tetraodon nigroviridis]
Length = 412
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA+ L +Q + K P+ NLY+S LP
Sbjct: 94 TTNKCKGYGFVDFDSPAAAQKAVTALKSSGVQAQMAKQQEQDPT-------NLYISNLPV 146
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELES+ +G++I++RIL D T G ++ + E+
Sbjct: 147 SMDEQELESMLKSFGQVISTRILRDANGTSRGVGFARMESTEK 189
>gi|38541222|gb|AAH62832.1| Pabpc1a protein, partial [Danio rerio]
Length = 327
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 61/100 (61%), Gaps = 7/100 (7%)
Query: 25 ICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGAN 82
+C ++ T +SLGY +VN+ +P DAE+A++T+N ++ + +++ +++ PS N
Sbjct: 42 VCRDMM-TRRSLGYAYVNFQQPADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGN 100
Query: 83 LYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+++ L K + + L FS +G I++ +++CD ENG
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 52/107 (48%), Gaps = 18/107 (16%)
Query: 25 ICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE-------- 76
I V + +S G+GFV++ R EDA++A++ +NG + K + V A+ E
Sbjct: 220 IRVMTDDSGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYVGRAQKKGERQTELKRK 279
Query: 77 ----------SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRIL 113
+G NLYV L + + L FSP+G I +++++
Sbjct: 280 FEQMKQDRMTRYQGVNLYVKNLDDGLDDERLRKEFSPFGTITSAKVM 326
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 8/105 (7%)
Query: 26 CVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVS--YARPSSESIKGA-- 81
C + S GYGFV++ E AE+AI +NG+ L ++ + V +R E+ GA
Sbjct: 128 CKVVCDENGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEMGARA 187
Query: 82 ----NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
N+Y+ + M ++L+ +F YG ++ R++ D+ G
Sbjct: 188 KEFTNVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDDSGKSKG 232
>gi|34793|emb|CAA45923.1| 348 aa protein [Homo sapiens]
Length = 372
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 59/103 (57%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA++ L +Q + K P+ NLY+S LP
Sbjct: 65 TTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQKAKQQEQDPT-------NLYISNLPL 117
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G++I++RIL D+ T G ++ + E+
Sbjct: 118 SMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEK 160
Score = 42.4 bits (98), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 26/40 (65%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+ + NLY+ GLP H + Q+L L PYG+I++++ + D
Sbjct: 24 DQLSKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILD 63
>gi|147899475|ref|NP_001085069.1| polyadenylate-binding protein 1-B [Xenopus laevis]
gi|82236793|sp|Q6IP09.1|PABPB_XENLA RecName: Full=Polyadenylate-binding protein 1-B; Short=PABP-1-B;
Short=Poly(A)-binding protein 1-B; Short=xPABP1-B;
AltName: Full=Cytoplasmic poly(A)-binding protein 1-B
gi|47940242|gb|AAH72110.1| MGC79060 protein [Xenopus laevis]
gi|80476254|gb|AAI08463.1| MGC79060 protein [Xenopus laevis]
Length = 633
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K +++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 55.5 bits (132), Expect = 8e-06, Method: Composition-based stats.
Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 18/101 (17%)
Query: 33 AQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE---------------- 76
+S G+GFV++ R EDA+KA++ +NG L K I V A+ E
Sbjct: 228 GKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDR 287
Query: 77 --SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+G NLYV L + + L F+P+G I +++++ +
Sbjct: 288 ITRYQGVNLYVKNLDDGIDDERLRKEFTPFGSITSAKVMME 328
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/112 (26%), Positives = 54/112 (48%), Gaps = 8/112 (7%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GYGFV++ E AE+AI+ +NG+ L ++ + V +R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ GA N+Y+ + M + L+ F YG ++ +++ D+ G
Sbjct: 181 AELGARAKEFTNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKSRG 232
Score = 36.2 bits (82), Expect = 4.3, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGL 88
++ +S G+GFV + PE+A KA+ +NG + K + V+ A+ E + A+L +
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE--RQAHLTNQYM 383
Query: 89 PKHMSQQELESLFSPY 104
+ S + + +PY
Sbjct: 384 QRMASVRVPNPVINPY 399
>gi|395856984|ref|XP_003800896.1| PREDICTED: polyadenylate-binding protein 5 [Otolemur garnettii]
Length = 382
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 51/87 (58%), Gaps = 2/87 (2%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKG--ANLYVSGLP 89
T LGYG+VN+ P DAE A+NT+N L K ++ +++P K N+++ L
Sbjct: 55 THSPLGYGYVNFRFPADAEWALNTMNFDLLNGKPFRLMWSQPDDRLRKSGVGNIFIKNLD 114
Query: 90 KHMSQQELESLFSPYGRIITSRILCDN 116
K + + L LFS +G I++ +++CD+
Sbjct: 115 KSIDNRALFYLFSAFGNILSCKVVCDD 141
Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 51/109 (46%), Gaps = 18/109 (16%)
Query: 25 ICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESI------ 78
+ V ++ +S G+GFV Y E A+KA+ L+G + K + V A+ E +
Sbjct: 228 VKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKILYVGRAQKKIERLAELRRR 287
Query: 79 ------------KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
G +Y+ L + + ++L+ FSP+G I ++++ +
Sbjct: 288 FERLRLKDKSRPPGVPIYIKNLDETIDDEKLKEEFSPFGSISRAKVMME 336
Score = 42.4 bits (98), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 9/106 (8%)
Query: 26 CVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVS-YARPSSESIKG---- 80
C + S GY +V++ A +AI +NG+RL N+ + V + P + +
Sbjct: 135 CKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRD 194
Query: 81 ----ANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
N++V L M ++L+ LFS YG + +++ D G
Sbjct: 195 RATFTNVFVKNLGDDMDDEKLKELFSEYGPTESVKVIRDASGKSKG 240
>gi|255555393|ref|XP_002518733.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223542114|gb|EEF43658.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 644
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/95 (31%), Positives = 52/95 (54%), Gaps = 2/95 (2%)
Query: 30 ISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSG 87
++T +SLGYG+VNY P+DA +A++ LN L I++ Y+ PS N+++
Sbjct: 59 LTTRRSLGYGYVNYSSPQDAARALDMLNFTPLNGSPIRIMYSHRDPSVRKSGSGNIFIKN 118
Query: 88 LPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
L K + + L FS +G I++ ++ D+ G
Sbjct: 119 LDKGIDHKALHDTFSAFGNILSCKVATDSSGQSKG 153
Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 51/91 (56%), Gaps = 6/91 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKV-----SYARPSS-ESIKGANLY 84
S+ QS GYGFV + E A+KAI LNG+ L +K + V R S+ + + N+Y
Sbjct: 147 SSGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGPFLRKQERESAIDKTRFNNVY 206
Query: 85 VSGLPKHMSQQELESLFSPYGRIITSRILCD 115
V L + ++++L+ F YG I ++ ++ D
Sbjct: 207 VKNLSETTTEEDLKKAFGEYGTITSAVVMRD 237
Score = 52.0 bits (123), Expect = 8e-05, Method: Composition-based stats.
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 18/96 (18%)
Query: 38 YGFVNYHRPEDAEKAINTLNGLRLQNKT---------------IKVSYA---RPSSESIK 79
+GFVN+ +DA A+ LNG + +K +KV + + +++ +
Sbjct: 245 FGFVNFENADDAATAVEALNGKKFDDKEWFVGKAQKKNERENELKVRFEQSMKEAADKFQ 304
Query: 80 GANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
GANLY+ L + L+ LFSP+G I + +++ D
Sbjct: 305 GANLYIKNLDDSIGDDRLKQLFSPFGTITSCKVMRD 340
>gi|126320658|ref|XP_001364500.1| PREDICTED: polyadenylate-binding protein 4-like [Monodelphis
domestica]
Length = 630
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K I++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 27/103 (26%), Positives = 51/103 (49%), Gaps = 18/103 (17%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE--------------- 76
+ +S G+GFV++ + EDA KA+ +NG + K + V A+ E
Sbjct: 227 SGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQE 286
Query: 77 ---SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
+G NLY+ L + ++L FSP+G I +++++ ++
Sbjct: 287 RISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED 329
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 8/112 (7%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GY FV++ + A++AI +NG+ L ++ + V +R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ GA N+Y+ M L+ LFS YG+ ++ +++ D G
Sbjct: 181 AELGAKAKEFTNVYIKNFGDDMDDGRLKELFSKYGKTLSVKVMTDPSGKSKG 232
>gi|301790633|ref|XP_002930398.1| PREDICTED: polyadenylate-binding protein 4-like [Ailuropoda
melanoleuca]
Length = 644
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K I++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 55.5 bits (132), Expect = 8e-06, Method: Composition-based stats.
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 18/103 (17%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE--------------- 76
+ +S G+GFV+Y + EDA KA+ +NG + K I V A+ E
Sbjct: 227 SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQE 286
Query: 77 ---SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
+G NLY+ L + ++L FSP+G I +++++ ++
Sbjct: 287 RISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED 329
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 8/112 (7%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GY FV++ E A+KAI +NG+ L ++ + V +R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ GA N+Y+ + + + L+ LFS +G+ ++ +++ D G
Sbjct: 181 AELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKG 232
Score = 35.8 bits (81), Expect = 5.1, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + +K + V+ A+ E
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|126330207|ref|XP_001365338.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Monodelphis
domestica]
Length = 614
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K I++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 27/103 (26%), Positives = 51/103 (49%), Gaps = 18/103 (17%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE--------------- 76
+ +S G+GFV++ + EDA KA+ +NG + K + V A+ E
Sbjct: 227 SGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQE 286
Query: 77 ---SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
+G NLY+ L + ++L FSP+G I +++++ ++
Sbjct: 287 RISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED 329
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 8/112 (7%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GY FV++ + A++AI +NG+ L ++ + V +R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ GA N+Y+ M L+ LFS YG+ ++ +++ D G
Sbjct: 181 AELGAKAKEFTNVYIKNFGDDMDDGRLKELFSKYGKTLSVKVMTDPSGKSKG 232
>gi|118101731|ref|XP_417821.2| PREDICTED: polyadenylate-binding protein 4 [Gallus gallus]
Length = 630
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K I++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/103 (27%), Positives = 51/103 (49%), Gaps = 18/103 (17%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE--------------- 76
T +S G+GFV++ + EDA KA+ +NG + K + V A+ E
Sbjct: 227 TGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRRFEQLKQE 286
Query: 77 ---SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
+G NLY+ L + ++L FSP+G I +++++ ++
Sbjct: 287 RISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED 329
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 53/112 (47%), Gaps = 8/112 (7%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GY FV++ + A++AI +NG+ L ++ + V +R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ GA N+Y+ M + L+ LFS YG+ ++ +++ D G
Sbjct: 181 AELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSKG 232
Score = 36.2 bits (82), Expect = 5.0, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + +K + V+ A+ E
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|148229527|ref|NP_001085857.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Xenopus
laevis]
gi|49118872|gb|AAH73435.1| MGC80927 protein [Xenopus laevis]
Length = 626
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K I++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats.
Identities = 28/102 (27%), Positives = 51/102 (50%), Gaps = 18/102 (17%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE--------------- 76
+ +S G+GFV++ R EDA KA++ +NG + K + V A+ E
Sbjct: 227 SGKSKGFGFVSFERHEDANKAVDDMNGKDVNGKIMFVGRAQKKVERQAELKRRFEQLKQE 286
Query: 77 ---SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+G NLY+ L + ++L FSP+G I +++++ +
Sbjct: 287 RISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE 328
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 52/112 (46%), Gaps = 8/112 (7%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GY FV++ + A++AI +NG+ L ++ + V R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKCRRERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ GA N+Y+ + M + L+ FS YG+ ++ +++ D G
Sbjct: 181 AELGAKAKEFTNVYIKNFGEDMDDERLKETFSKYGKTLSVKVMTDPSGKSKG 232
Score = 36.2 bits (82), Expect = 4.8, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + +K + V+ A+ E
Sbjct: 326 MLEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|354485887|ref|XP_003505113.1| PREDICTED: polyadenylate-binding protein 4-like [Cricetulus
griseus]
Length = 685
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K I++ +++ PS N+++ L
Sbjct: 70 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLD 129
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 130 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 158
Score = 55.5 bits (132), Expect = 7e-06, Method: Composition-based stats.
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 18/103 (17%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE--------------- 76
+ +S G+GFV+Y + EDA KA+ +NG + K I V A+ E
Sbjct: 249 SGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQE 308
Query: 77 ---SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
+G NLY+ L + ++L FSP+G I +++++ ++
Sbjct: 309 RISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED 351
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 53/112 (47%), Gaps = 8/112 (7%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GY FV++ E A+KAI +NG+ L ++ + V +R E
Sbjct: 143 AFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE 202
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ GA N+Y+ + + L+ LFS +G+ ++ +++ D G
Sbjct: 203 AELGAKAKEFTNVYIKNFGEEVDDDNLKELFSQFGKTLSVKVMRDPSGKSKG 254
Score = 35.8 bits (81), Expect = 5.1, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + +K + V+ A+ E
Sbjct: 348 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE 395
>gi|52346016|ref|NP_001005051.1| poly(A) binding protein, cytoplasmic 1 [Xenopus (Silurana)
tropicalis]
gi|49903495|gb|AAH76931.1| polyadenylate-binding protein 1 [Xenopus (Silurana) tropicalis]
Length = 634
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K +++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 55.8 bits (133), Expect = 6e-06, Method: Composition-based stats.
Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 18/101 (17%)
Query: 33 AQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE---------------- 76
+S G+GFV++ R EDA+KA++ +NG + K I V A+ E
Sbjct: 228 GKSKGFGFVSFERHEDAQKAVDDMNGKDMNGKAIYVGRAQKKVERQTELKRKFEQMKQDR 287
Query: 77 --SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+G NLYV L + + L FSP+G I +++++ +
Sbjct: 288 ITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME 328
Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats.
Identities = 32/113 (28%), Positives = 57/113 (50%), Gaps = 12/113 (10%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GYGFV++ E AE+AI+ +NG+ L ++ + V +R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGK 123
+ GA N+Y+ + M + L+ +F YG ++ +++ D +NGK
Sbjct: 181 AELGARAKEFTNVYIKNFGEDMDDERLKEMFGKYGPALSVKVMTD----DNGK 229
Score = 36.2 bits (82), Expect = 4.5, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGL 88
++ +S G+GFV + PE+A KA+ +NG + K + V+ A+ E + A+L +
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE--RQAHLTNQYM 383
Query: 89 PKHMSQQELESLFSPY 104
+ S + + +PY
Sbjct: 384 QRMASVRVPNPVINPY 399
>gi|344236474|gb|EGV92577.1| Polyadenylate-binding protein 4 [Cricetulus griseus]
Length = 524
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K I++ +++ PS N+++ L
Sbjct: 39 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLD 98
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 99 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 127
Score = 55.5 bits (132), Expect = 7e-06, Method: Composition-based stats.
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 18/103 (17%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE--------------- 76
+ +S G+GFV+Y + EDA KA+ +NG + K I V A+ E
Sbjct: 218 SGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQE 277
Query: 77 ---SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
+G NLY+ L + ++L FSP+G I +++++ ++
Sbjct: 278 RISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED 320
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 53/112 (47%), Gaps = 8/112 (7%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GY FV++ E A+KAI +NG+ L ++ + V +R E
Sbjct: 112 AFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE 171
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ GA N+Y+ + + L+ LFS +G+ ++ +++ D G
Sbjct: 172 AELGAKAKEFTNVYIKNFGEEVDDDNLKELFSQFGKTLSVKVMRDPSGKSKG 223
Score = 35.8 bits (81), Expect = 5.1, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + +K + V+ A+ E
Sbjct: 317 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE 364
>gi|241831489|ref|XP_002414860.1| apoptosis-promoting RNA-binding protein TIA-1/TIAR, putative
[Ixodes scapularis]
gi|215509072|gb|EEC18525.1| apoptosis-promoting RNA-binding protein TIA-1/TIAR, putative
[Ixodes scapularis]
Length = 686
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 55/93 (59%), Gaps = 2/93 (2%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++NK I++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDAIKNKPIRIMWSQRDPSLRKSGVGNVFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + + FS +G I++ R+ D A G
Sbjct: 108 KTIDNKAMYDTFSAFGNILSCRVATDEEAASKG 140
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 8/98 (8%)
Query: 33 AQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKG--------ANLY 84
A S GYGFV++ E A KAI+ +NG+ L NK + V P E K N+Y
Sbjct: 136 AASKGYGFVHFETEEAANKAISKVNGMLLNNKKVYVGKFIPRKEREKMLGDKARCFTNVY 195
Query: 85 VSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ + +L +F YG+I +++++ D+ G
Sbjct: 196 IKNFGDELDDDKLLVIFEKYGKITSAKVMTDDSGKNRG 233
Score = 52.0 bits (123), Expect = 8e-05, Method: Composition-based stats.
Identities = 26/102 (25%), Positives = 49/102 (48%), Gaps = 18/102 (17%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE--------------- 76
+ ++ G+GFV++ P+ AE+A+ LNG + + + V A+ +E
Sbjct: 228 SGKNRGFGFVSFEEPDSAERAVEELNGKDMGGRPLYVGRAQKKAERQSELKRHFEQLKQE 287
Query: 77 ---SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+G NLYV L + + L F P+G I +++++ D
Sbjct: 288 RLNRYQGVNLYVKNLDDALDDERLRKEFGPFGNITSAKVMTD 329
>gi|449268618|gb|EMC79472.1| Polyadenylate-binding protein 4 [Columba livia]
Length = 630
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K I++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 28/103 (27%), Positives = 51/103 (49%), Gaps = 18/103 (17%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE--------------- 76
T +S G+GFV++ + EDA KA+ +NG + K + V A+ E
Sbjct: 227 TGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQE 286
Query: 77 ---SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
+G NLY+ L + ++L FSP+G I +++++ ++
Sbjct: 287 RLSRYQGVNLYIKNLDDTIDDEKLRKEFSPFGAITSAKVMLED 329
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 53/112 (47%), Gaps = 8/112 (7%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GY FV++ + A++AI +NG+ L ++ + V +R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ GA N+Y+ M + L+ LFS YG+ ++ +++ D G
Sbjct: 181 AELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSKG 232
Score = 35.8 bits (81), Expect = 5.2, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + +K + V+ A+ E
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|349803919|gb|AEQ17432.1| putative poly binding cytoplasmic 1 [Hymenochirus curtipes]
Length = 590
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K +++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 55.5 bits (132), Expect = 6e-06, Method: Composition-based stats.
Identities = 29/101 (28%), Positives = 50/101 (49%), Gaps = 17/101 (16%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESI------------- 78
+ +S G+GFV++ R EDA+KA++ +NG + K I V A+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDDMNGKDMNGKAIYVGRAKKVERQTELKRKFEQMKQDR 286
Query: 79 ----KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+G NLYV L + + L FSP+G I +++++ +
Sbjct: 287 ITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME 327
Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats.
Identities = 30/112 (26%), Positives = 55/112 (49%), Gaps = 8/112 (7%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GYGFV++ E AE+AI+ +NG+ L ++ + V +R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ GA N+Y+ + M + L+ +F YG ++ +++ D+ G
Sbjct: 181 AELGARAKEFTNVYIKNFGEDMDDERLKEMFGKYGPALSVKVMTDDSGKSKG 232
>gi|291408596|ref|XP_002720594.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Oryctolagus cuniculus]
Length = 614
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K +++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLHKSGVGNIFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 18/102 (17%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE--------------- 76
+ +S G+GFV++ R EDA+KA++ +NG L K I V A+ E
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQD 286
Query: 77 ---SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+G NLYV L + + L FSP+G I +++++ +
Sbjct: 287 RITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME 328
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 8/112 (7%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GYGFV++ E AE+AI +NG+ L ++ + V +R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ GA N+Y+ + M + L+ LF +G ++ +++ D G
Sbjct: 181 AELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKG 232
Score = 35.8 bits (81), Expect = 5.6, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + K + V+ A+ E
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 373
>gi|291408594|ref|XP_002720593.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Oryctolagus cuniculus]
Length = 636
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K +++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLHKSGVGNIFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 18/102 (17%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE--------------- 76
+ +S G+GFV++ R EDA+KA++ +NG L K I V A+ E
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQD 286
Query: 77 ---SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+G NLYV L + + L FSP+G I +++++ +
Sbjct: 287 RITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME 328
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 8/112 (7%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GYGFV++ E AE+AI +NG+ L ++ + V +R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ GA N+Y+ + M + L+ LF +G ++ +++ D G
Sbjct: 181 AELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKG 232
Score = 35.8 bits (81), Expect = 5.7, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + K + V+ A+ E
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 373
>gi|291399204|ref|XP_002715240.1| PREDICTED: poly A binding protein, cytoplasmic 4-like [Oryctolagus
cuniculus]
Length = 644
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K I++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 18/103 (17%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE--------------- 76
+ +S G+GFV+Y + EDA KA+ +NG + K I V A+ E
Sbjct: 227 SGKSKGFGFVSYEKHEDANKAVEEMNGKEIGGKVIFVGRAQKKVERQAELKRKFEQLKQE 286
Query: 77 ---SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
+G NLY+ L + ++L FSP+G I +++++ ++
Sbjct: 287 RISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED 329
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 8/112 (7%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GY FV++ E A+KAI +NG+ L ++ + V +R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ GA N+Y+ + + + L+ LFS +G+ ++ +++ D G
Sbjct: 181 AELGAKAKEFTNVYIKNFGEEVDDESLKDLFSQFGKTLSVKVMRDPSGKSKG 232
Score = 35.8 bits (81), Expect = 5.2, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + +K + V+ A+ E
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|289742137|gb|ADD19816.1| polyA-binding protein [Glossina morsitans morsitans]
Length = 653
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/95 (31%), Positives = 57/95 (60%), Gaps = 2/95 (2%)
Query: 30 ISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSG 87
+ T +SLGY +VN+ +P DAE+A++T+N L+NK I++ +++ PS N+++
Sbjct: 37 VITRRSLGYAYVNFQQPADAERALDTMNFDLLRNKPIRIMWSQRDPSLRRSGIGNVFIKN 96
Query: 88 LPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
L K + + + FS +G I++ ++ D+ T G
Sbjct: 97 LDKTIDNKAIYDTFSAFGNILSCKVATDDKGTSKG 131
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 12/97 (12%)
Query: 35 SLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKG--------ANLYVS 86
S GYGFV++ E A AI +NG+ L K + V P E K N+YV
Sbjct: 129 SKGYGFVHFETEEAANNAIEKVNGMLLNGKKVYVGKFIPRKEREKDLGEKAKLFTNVYVK 188
Query: 87 GLPKHMSQQELESLFSPYGRIITSRILCDNLATENGK 123
+ ++L+ +F PYG+I + +++ E+GK
Sbjct: 189 NFGDDVDDEKLKEMFDPYGKITSYKVMI----KEDGK 221
>gi|126330205|ref|XP_001365269.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Monodelphis
domestica]
Length = 630
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K I++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 27/103 (26%), Positives = 51/103 (49%), Gaps = 18/103 (17%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE--------------- 76
+ +S G+GFV++ + EDA KA+ +NG + K + V A+ E
Sbjct: 227 SGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQE 286
Query: 77 ---SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
+G NLY+ L + ++L FSP+G I +++++ ++
Sbjct: 287 RISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED 329
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 8/112 (7%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GY FV++ + A++AI +NG+ L ++ + V +R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ GA N+Y+ M L+ LFS YG+ ++ +++ D G
Sbjct: 181 AELGAKAKEFTNVYIKNFGDDMDDGRLKELFSKYGKTLSVKVMTDPSGKSKG 232
>gi|35570|emb|CAA68428.1| unnamed protein product [Homo sapiens]
Length = 633
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K +++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 18/102 (17%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE--------------- 76
+ +S G+GFV++ R EDA+KA++ +NG L K I V A+ E
Sbjct: 224 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQD 283
Query: 77 ---SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+G NLYV L + + L FSP+G I +++++ +
Sbjct: 284 RITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME 325
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 30/112 (26%), Positives = 52/112 (46%), Gaps = 11/112 (9%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GYGFV++ E AE+AI +NG+ L ++ + V +R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ GA N+Y+ + M + L+ LF P ++ +++ D G
Sbjct: 181 AELGARAKEFTNVYIKNFGEDMDDERLKDLFGP---ALSVKVMTDESGKSKG 229
Score = 35.8 bits (81), Expect = 5.8, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + K + V+ A+ E
Sbjct: 323 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 370
>gi|291388359|ref|XP_002710763.1| PREDICTED: poly A binding protein, cytoplasmic 4 [Oryctolagus
cuniculus]
Length = 636
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K +++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 18/102 (17%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE--------------- 76
+ +S G+GFV++ R EDA+KA++ +NG L K I V A+ E
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQD 286
Query: 77 ---SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+G NLYV L + + L FSP+G I +++++ +
Sbjct: 287 RITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME 328
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 8/112 (7%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GYGFV++ E AE+AI +NG+ L ++ + V +R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ GA N+Y+ + M + L+ LF +G ++ +++ D G
Sbjct: 181 AELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKG 232
Score = 35.8 bits (81), Expect = 5.8, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + K + V+ A+ E
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 373
>gi|119612225|gb|EAW91819.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_e [Homo
sapiens]
Length = 633
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K +++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 18/102 (17%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE--------------- 76
+ +S G+GFV++ R EDA+KA++ +NG L K I V A+ E
Sbjct: 224 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQD 283
Query: 77 ---SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+G NLYV L + + L FSP+G I +++++ +
Sbjct: 284 RITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME 325
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 30/112 (26%), Positives = 52/112 (46%), Gaps = 11/112 (9%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GYGFV++ E AE+AI +NG+ L ++ + V +R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ GA N+Y+ + M + L+ LF P ++ +++ D G
Sbjct: 181 AELGARAKEFTNVYIKNFGEDMDDERLKDLFGP---ALSVKVMTDESGKSKG 229
Score = 35.8 bits (81), Expect = 5.8, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + K + V+ A+ E
Sbjct: 323 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 370
>gi|308801675|ref|XP_003078151.1| FOG: RRM domain (ISS) [Ostreococcus tauri]
gi|116056602|emb|CAL52891.1| FOG: RRM domain (ISS) [Ostreococcus tauri]
Length = 317
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 54/107 (50%), Gaps = 10/107 (9%)
Query: 26 CVFL-ISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKG---- 80
CV ++T +S G+GFV + AE AI NG K ++V +A ES KG
Sbjct: 51 CVIRDVATNRSRGFGFVKFASTSRAEDAIERFNGRECAGKILEVKFANTDGESDKGDSHG 110
Query: 81 -----ANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
N+YV GLP +Q L+ FS +G I+ R+L N +T +G
Sbjct: 111 TAPPSDNVYVKGLPPAWTQDNLKKYFSKFGHIVECRLLHANKSTSSG 157
>gi|73976763|ref|XP_857000.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Canis lupus
familiaris]
Length = 644
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K I++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 55.1 bits (131), Expect = 8e-06, Method: Composition-based stats.
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 18/103 (17%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE--------------- 76
+ +S G+GFV+Y + EDA KA+ +NG + K I V A+ E
Sbjct: 227 SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQE 286
Query: 77 ---SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
+G NLY+ L + ++L FSP+G I +++++ ++
Sbjct: 287 RISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED 329
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 8/112 (7%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GY FV++ E A+KAI +NG+ L ++ + V +R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ GA N+Y+ + + + L+ LFS +G+ ++ +++ D G
Sbjct: 181 AELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKG 232
Score = 35.8 bits (81), Expect = 5.2, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + +K + V+ A+ E
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|395526571|ref|XP_003765434.1| PREDICTED: polyadenylate-binding protein 4 [Sarcophilus harrisii]
Length = 630
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K I++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/104 (26%), Positives = 52/104 (50%), Gaps = 18/104 (17%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE-------------- 76
S+ +S G+GFV++ + EDA KA+ +NG + K + V A+ E
Sbjct: 226 SSGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQ 285
Query: 77 ----SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
+G NLY+ L + ++L FSP+G I +++++ ++
Sbjct: 286 ERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED 329
Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 8/112 (7%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GY FV++ + A++AI +NG+ L ++ + V +R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ GA N+Y+ M + L+ LFS YG+ ++ +++ D+ G
Sbjct: 181 AELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDSSGKSKG 232
>gi|13096978|gb|AAH03283.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
Length = 660
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K I++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVMKGKPIRIMWSQRDPSLRKSGVGNVFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 18/104 (17%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE-------------- 76
S+ +S G+GFV+Y + EDA KA+ +NG + K I V A+ E
Sbjct: 226 SSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQ 285
Query: 77 ----SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
+G NLY+ L + ++L FSP+G I +++++ ++
Sbjct: 286 ERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED 329
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 8/112 (7%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GY FV++ E A+KAI +NG+ L ++ + V +R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ GA N+Y+ + + L+ LFS +G+ ++ +++ D+ G
Sbjct: 181 AELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKG 232
Score = 35.8 bits (81), Expect = 5.7, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + +K + V+ A+ E
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|34419622|ref|NP_570951.2| polyadenylate-binding protein 4 isoform 1 [Mus musculus]
gi|33991671|gb|AAH56432.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
gi|148698437|gb|EDL30384.1| mCG5546, isoform CRA_c [Mus musculus]
Length = 660
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K I++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVMKGKPIRIMWSQRDPSLRKSGVGNVFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 18/104 (17%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE-------------- 76
S+ +S G+GFV+Y + EDA KA+ +NG + K I V A+ E
Sbjct: 226 SSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQ 285
Query: 77 ----SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
+G NLY+ L + ++L FSP+G I +++++ ++
Sbjct: 286 ERISRYQGVNLYIKNLDDTIDDEKLRREFSPFGSITSAKVMLED 329
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 8/112 (7%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GY FV++ E A+KAI +NG+ L ++ + V +R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ GA N+Y+ + + L+ LFS +G+ ++ +++ D+ G
Sbjct: 181 AELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKG 232
Score = 35.8 bits (81), Expect = 5.7, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + +K + V+ A+ E
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|2665654|gb|AAB88449.1| polyadenylate binding protein [Petromyzon marinus]
Length = 630
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K I++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVVKGKPIRIMWSQRDPSLRRSGVGNIFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 55.1 bits (131), Expect = 9e-06, Method: Composition-based stats.
Identities = 30/107 (28%), Positives = 54/107 (50%), Gaps = 18/107 (16%)
Query: 27 VFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE---------- 76
V + +S G+GFV++ R EDA+KA++ +N L + I V A+ +E
Sbjct: 223 VMMDEGGKSKGFGFVSFERHEDAQKAVDEMNTKELNGRAIYVGRAQKKAERQTELKRKFE 282
Query: 77 --------SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+G NLYV L +++ + L FSP+G I +++++ +
Sbjct: 283 MLKQERMSKYQGVNLYVKNLDDNINDERLWKEFSPFGTITSAKVMME 329
Score = 45.1 bits (105), Expect = 0.009, Method: Composition-based stats.
Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 9/113 (7%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GYGFV++ E A+KAI +NG+ L ++ + V +R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYGFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPY-GRIITSRILCDNLATENG 122
+ GA N+Y+ M + L F Y G+ ++ +++ D G
Sbjct: 181 AEFGAKAREFTNVYIKNFGDDMDDERLREYFEQYVGKTLSVKVMMDEGGKSKG 233
Score = 36.2 bits (82), Expect = 4.0, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + +K + V+ A+ E
Sbjct: 327 MMEEGRSRGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEE 374
>gi|41386798|ref|NP_776993.1| polyadenylate-binding protein 1 [Bos taurus]
gi|46367787|ref|NP_002559.2| polyadenylate-binding protein 1 [Homo sapiens]
gi|383872540|ref|NP_001244826.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|73974130|ref|XP_856708.1| PREDICTED: polyadenylate-binding protein 1 isoform 6 [Canis lupus
familiaris]
gi|194036975|ref|XP_001927782.1| PREDICTED: polyadenylate-binding protein 1 [Sus scrofa]
gi|332213999|ref|XP_003256115.1| PREDICTED: polyadenylate-binding protein 1 [Nomascus leucogenys]
gi|344273312|ref|XP_003408467.1| PREDICTED: polyadenylate-binding protein 1-like [Loxodonta
africana]
gi|402878853|ref|XP_003903080.1| PREDICTED: polyadenylate-binding protein 1 [Papio anubis]
gi|3183544|sp|P11940.2|PABP1_HUMAN RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|47117093|sp|P61286.1|PABP1_BOVIN RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|1562511|gb|AAD08718.1| poly(A)-binding protein [Homo sapiens]
gi|8979741|emb|CAB96752.1| polyadenylate-binding protein 1 [Bos taurus]
gi|16358990|gb|AAH15958.1| PABPC1 protein [Homo sapiens]
gi|23270713|gb|AAH23520.1| Poly(A) binding protein, cytoplasmic 1 [Homo sapiens]
gi|74268035|gb|AAI02366.1| Poly(A) binding protein, cytoplasmic 1 [Bos taurus]
gi|119612221|gb|EAW91815.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_b [Homo
sapiens]
gi|119612223|gb|EAW91817.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_b [Homo
sapiens]
gi|123993665|gb|ABM84434.1| poly(A) binding protein, cytoplasmic 1 [synthetic construct]
gi|123999981|gb|ABM87499.1| poly(A) binding protein, cytoplasmic 1 [synthetic construct]
gi|168278070|dbj|BAG11013.1| polyadenylate-binding protein 1 [synthetic construct]
gi|296480464|tpg|DAA22579.1| TPA: polyadenylate-binding protein 1 [Bos taurus]
gi|380811722|gb|AFE77736.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|384940022|gb|AFI33616.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|384940024|gb|AFI33617.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 636
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K +++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 18/102 (17%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE--------------- 76
+ +S G+GFV++ R EDA+KA++ +NG L K I V A+ E
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQD 286
Query: 77 ---SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+G NLYV L + + L FSP+G I +++++ +
Sbjct: 287 RITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME 328
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 8/112 (7%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GYGFV++ E AE+AI +NG+ L ++ + V +R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ GA N+Y+ + M + L+ LF +G ++ +++ D G
Sbjct: 181 AELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKG 232
Score = 35.8 bits (81), Expect = 6.0, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + K + V+ A+ E
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 373
>gi|410966840|ref|XP_003989935.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Felis catus]
Length = 660
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K I++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 55.1 bits (131), Expect = 8e-06, Method: Composition-based stats.
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 18/103 (17%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE--------------- 76
+ +S G+GFV+Y + EDA KA+ +NG + K I V A+ E
Sbjct: 227 SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQE 286
Query: 77 ---SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
+G NLY+ L + ++L FSP+G I +++++ ++
Sbjct: 287 RISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED 329
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 8/112 (7%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GY FV++ E A+KAI +NG+ L ++ + V +R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ GA N+Y+ + + + L+ LFS +G+ ++ +++ D G
Sbjct: 181 AELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKG 232
Score = 35.8 bits (81), Expect = 5.3, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + +K + V+ A+ E
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|335291035|ref|XP_003127861.2| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Sus scrofa]
Length = 644
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K I++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 55.1 bits (131), Expect = 8e-06, Method: Composition-based stats.
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 18/103 (17%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE--------------- 76
+ +S G+GFV+Y + EDA KA+ +NG + K I V A+ E
Sbjct: 227 SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQE 286
Query: 77 ---SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
+G NLY+ L + ++L FSP+G I +++++ ++
Sbjct: 287 RISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED 329
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 8/112 (7%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GY FV++ E A+KAI +NG+ L ++ + V +R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ GA N+Y+ + + + L+ LFS +G+ ++ +++ D G
Sbjct: 181 AELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKG 232
Score = 35.8 bits (81), Expect = 5.3, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + +K + V+ A+ E
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|426215228|ref|XP_004001876.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Ovis aries]
Length = 644
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K I++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 18/103 (17%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE--------------- 76
+ +S G+GFV+Y + EDA KA+ +NG + K I V A+ E
Sbjct: 227 SGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQE 286
Query: 77 ---SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
+G NLY+ L + ++L FSP+G I +++++ ++
Sbjct: 287 RISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED 329
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 8/112 (7%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GY FV++ E A+KAI +NG+ L ++ + V +R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ GA N+Y+ + + + L+ LFS +G+ ++ +++ D G
Sbjct: 181 AELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKG 232
Score = 35.8 bits (81), Expect = 5.2, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + +K + V+ A+ E
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|426215226|ref|XP_004001875.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Ovis aries]
Length = 660
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K I++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 18/103 (17%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE--------------- 76
+ +S G+GFV+Y + EDA KA+ +NG + K I V A+ E
Sbjct: 227 SGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQE 286
Query: 77 ---SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
+G NLY+ L + ++L FSP+G I +++++ ++
Sbjct: 287 RISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED 329
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 8/112 (7%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GY FV++ E A+KAI +NG+ L ++ + V +R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ GA N+Y+ + + + L+ LFS +G+ ++ +++ D G
Sbjct: 181 AELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKG 232
Score = 35.8 bits (81), Expect = 5.2, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + +K + V+ A+ E
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|139948570|ref|NP_001077193.1| polyadenylate-binding protein 4 [Bos taurus]
gi|134024563|gb|AAI34510.1| PABPC4 protein [Bos taurus]
gi|296488909|tpg|DAA31022.1| TPA: poly A binding protein, cytoplasmic 4 [Bos taurus]
Length = 645
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K I++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 18/103 (17%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE--------------- 76
+ +S G+GFV+Y + EDA KA+ +NG + K I V A+ E
Sbjct: 227 SGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQE 286
Query: 77 ---SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
+G NLY+ L + ++L FSP+G I +++++ ++
Sbjct: 287 RISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED 329
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 8/112 (7%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GY FV++ E A+KAI +NG+ L ++ + V +R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ GA N+Y+ + + + L+ LFS +G+ ++ +++ D G
Sbjct: 181 AELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKG 232
Score = 35.8 bits (81), Expect = 5.2, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + +K + V+ A+ E
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|417403591|gb|JAA48595.1| Putative polyadenylate-binding protein rrm superfamily [Desmodus
rotundus]
Length = 644
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K I++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 18/102 (17%)
Query: 33 AQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE---------------- 76
+S G+GFV+Y + EDA KA+ +NG + K I V A+ E
Sbjct: 228 GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQER 287
Query: 77 --SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
+G NLY+ L + ++L FSP+G I +++++ ++
Sbjct: 288 ISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED 329
Score = 50.4 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 12/113 (10%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GY FV++ E A+KAI +NG+ L ++ + V +R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGK 123
+ GA N+Y+ + M + L+ LFS +G+ ++ +++ D NGK
Sbjct: 181 AELGAKAKEFTNVYIKNFGEEMDDESLKELFSQFGKTLSVKVMRD----PNGK 229
Score = 35.8 bits (81), Expect = 5.3, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + +K + V+ A+ E
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|410966842|ref|XP_003989936.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Felis catus]
Length = 644
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K I++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 55.1 bits (131), Expect = 8e-06, Method: Composition-based stats.
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 18/103 (17%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE--------------- 76
+ +S G+GFV+Y + EDA KA+ +NG + K I V A+ E
Sbjct: 227 SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQE 286
Query: 77 ---SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
+G NLY+ L + ++L FSP+G I +++++ ++
Sbjct: 287 RISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED 329
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 8/112 (7%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GY FV++ E A+KAI +NG+ L ++ + V +R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ GA N+Y+ + + + L+ LFS +G+ ++ +++ D G
Sbjct: 181 AELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKG 232
Score = 35.8 bits (81), Expect = 5.2, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + +K + V+ A+ E
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|402854029|ref|XP_003891683.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Papio anubis]
Length = 644
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K I++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 18/103 (17%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE--------------- 76
+ +S G+GFV+Y + EDA KA+ +NG + K I V A+ E
Sbjct: 227 SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQE 286
Query: 77 ---SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
+G NLY+ L + ++L FSP+G I +++++ ++
Sbjct: 287 RISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED 329
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 8/112 (7%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GY FV++ E A+KAI +NG+ L ++ + V +R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ GA N+Y+ + + + L+ LFS +G+ ++ +++ D G
Sbjct: 181 AELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKG 232
Score = 35.8 bits (81), Expect = 5.3, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + +K + V+ A+ E
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|351713677|gb|EHB16596.1| Polyadenylate-binding protein 4 [Heterocephalus glaber]
Length = 661
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K I++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 55.1 bits (131), Expect = 9e-06, Method: Composition-based stats.
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 18/103 (17%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE--------------- 76
+ +S G+GFV+Y + EDA KA+ +NG + K I V A+ E
Sbjct: 227 SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQE 286
Query: 77 ---SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
+G NLY+ L + ++L FSP+G I +++++ ++
Sbjct: 287 RISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED 329
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 8/112 (7%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GY FV++ E A+KAI +NG+ L ++ + V +R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ GA N+Y+ + + + L+ LFS +G+ ++ +++ D G
Sbjct: 181 AELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKG 232
Score = 35.8 bits (81), Expect = 5.3, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + +K + V+ A+ E
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|350585908|ref|XP_003482078.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Sus scrofa]
Length = 660
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K I++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 55.1 bits (131), Expect = 9e-06, Method: Composition-based stats.
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 18/103 (17%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE--------------- 76
+ +S G+GFV+Y + EDA KA+ +NG + K I V A+ E
Sbjct: 227 SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQE 286
Query: 77 ---SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
+G NLY+ L + ++L FSP+G I +++++ ++
Sbjct: 287 RISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED 329
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 8/112 (7%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GY FV++ E A+KAI +NG+ L ++ + V +R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ GA N+Y+ + + + L+ LFS +G+ ++ +++ D G
Sbjct: 181 AELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKG 232
Score = 35.8 bits (81), Expect = 5.3, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + +K + V+ A+ E
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|348552996|ref|XP_003462313.1| PREDICTED: polyadenylate-binding protein 4-like isoform 2 [Cavia
porcellus]
Length = 644
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K I++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 18/103 (17%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE--------------- 76
+ +S G+GFV+Y + EDA KA+ +NG + K I V A+ E
Sbjct: 227 SGKSKGFGFVSYEKHEDANKAVEEMNGKEINGKIIFVGRAQKKVERQAELKRKFEQLKQE 286
Query: 77 ---SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
+G NLY+ L + ++L FSP+G I +++++ ++
Sbjct: 287 RISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED 329
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 8/112 (7%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GY FV++ E A+KAI +NG+ L ++ + V +R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ GA N+Y+ + + + L+ LFS +G+ ++ +++ D G
Sbjct: 181 AELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKG 232
Score = 35.8 bits (81), Expect = 5.2, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + +K + V+ A+ E
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|348552994|ref|XP_003462312.1| PREDICTED: polyadenylate-binding protein 4-like isoform 1 [Cavia
porcellus]
Length = 660
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K I++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 18/103 (17%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE--------------- 76
+ +S G+GFV+Y + EDA KA+ +NG + K I V A+ E
Sbjct: 227 SGKSKGFGFVSYEKHEDANKAVEEMNGKEINGKIIFVGRAQKKVERQAELKRKFEQLKQE 286
Query: 77 ---SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
+G NLY+ L + ++L FSP+G I +++++ ++
Sbjct: 287 RISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED 329
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 8/112 (7%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GY FV++ E A+KAI +NG+ L ++ + V +R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ GA N+Y+ + + + L+ LFS +G+ ++ +++ D G
Sbjct: 181 AELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKG 232
Score = 35.8 bits (81), Expect = 5.3, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + +K + V+ A+ E
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|344287651|ref|XP_003415566.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Loxodonta
africana]
Length = 644
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K I++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 55.1 bits (131), Expect = 9e-06, Method: Composition-based stats.
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 18/103 (17%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE--------------- 76
+ +S G+GFV+Y + EDA KA+ +NG + K I V A+ E
Sbjct: 227 SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQE 286
Query: 77 ---SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
+G NLY+ L + ++L FSP+G I +++++ ++
Sbjct: 287 RISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED 329
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 8/112 (7%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GY FV++ E A+KAI +NG+ L ++ + V +R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ GA N+Y+ + + + L+ LFS +G+ ++ +++ D G
Sbjct: 181 AELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKG 232
Score = 35.8 bits (81), Expect = 5.3, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + +K + V+ A+ E
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|431901758|gb|ELK08635.1| Polyadenylate-binding protein 1 [Pteropus alecto]
Length = 636
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K +++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 18/102 (17%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE--------------- 76
+ +S G+GFV++ R EDA+KA++ +NG L K I V A+ E
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQD 286
Query: 77 ---SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+G NLYV L + + L FSP+G I +++++ +
Sbjct: 287 RITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME 328
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 8/112 (7%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GYGFV++ E AE+AI +NG+ L ++ + V +R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ GA N+Y+ + M + L+ LF +G ++ +++ D G
Sbjct: 181 AELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKG 232
Score = 35.8 bits (81), Expect = 6.0, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + K + V+ A+ E
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 373
>gi|390476078|ref|XP_002759394.2| PREDICTED: polyadenylate-binding protein 1-like [Callithrix
jacchus]
Length = 633
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K +++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 18/102 (17%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE--------------- 76
+ +S G+GFV++ R EDA+KA++ +NG L K I V A+ E
Sbjct: 224 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQD 283
Query: 77 ---SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+G NLYV L + + L FSP+G I +++++ +
Sbjct: 284 RITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME 325
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 30/112 (26%), Positives = 52/112 (46%), Gaps = 11/112 (9%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GYGFV++ E AE+AI +NG+ L ++ + V +R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ GA N+Y+ + M + L+ LF P ++ +++ D G
Sbjct: 181 AELGARAKEFTNVYIKNFGEDMDDERLKDLFGP---ALSVKVMTDESGKSKG 229
Score = 35.8 bits (81), Expect = 6.0, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + K + V+ A+ E
Sbjct: 323 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 370
>gi|148698436|gb|EDL30383.1| mCG5546, isoform CRA_b [Mus musculus]
Length = 580
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K I++ +++ PS N+++ L
Sbjct: 65 TRRSLGYAYVNFQQPADAERALDTMNFDVMKGKPIRIMWSQRDPSLRKSGVGNVFIKNLD 124
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 125 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 153
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 18/104 (17%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE-------------- 76
S+ +S G+GFV+Y + EDA KA+ +NG + K I V A+ E
Sbjct: 243 SSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQ 302
Query: 77 ----SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
+G NLY+ L + ++L FSP+G I +++++ ++
Sbjct: 303 ERISRYQGVNLYIKNLDDTIDDEKLRREFSPFGSITSAKVMLED 346
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 8/112 (7%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GY FV++ E A+KAI +NG+ L ++ + V +R E
Sbjct: 138 AFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE 197
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ GA N+Y+ + + L+ LFS +G+ ++ +++ D+ G
Sbjct: 198 AELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKG 249
Score = 35.8 bits (81), Expect = 5.7, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + +K + V+ A+ E
Sbjct: 343 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE 390
>gi|207080212|ref|NP_001128842.1| polyadenylate-binding protein 1 [Pongo abelii]
gi|75070631|sp|Q5R8F7.1|PABP1_PONAB RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|55730462|emb|CAH91953.1| hypothetical protein [Pongo abelii]
Length = 636
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K +++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 18/102 (17%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE--------------- 76
+ +S G+GFV++ R EDA+KA++ +NG L K I V A+ E
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQD 286
Query: 77 ---SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+G NLYV L + + L FSP+G I +++++ +
Sbjct: 287 RITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME 328
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 8/112 (7%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GYGFV++ E AE+AI +NG+ L ++ + V +R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ GA N+Y+ + M + L+ LF +G ++ +++ D G
Sbjct: 181 AELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKG 232
Score = 35.8 bits (81), Expect = 6.0, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + K + V+ A+ E
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 373
>gi|417403696|gb|JAA48646.1| Putative polyadenylate-binding protein rrm superfamily [Desmodus
rotundus]
Length = 660
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K I++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 18/102 (17%)
Query: 33 AQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE---------------- 76
+S G+GFV+Y + EDA KA+ +NG + K I V A+ E
Sbjct: 228 GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQER 287
Query: 77 --SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
+G NLY+ L + ++L FSP+G I +++++ ++
Sbjct: 288 ISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED 329
Score = 50.4 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 12/113 (10%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GY FV++ E A+KAI +NG+ L ++ + V +R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGK 123
+ GA N+Y+ + M + L+ LFS +G+ ++ +++ D NGK
Sbjct: 181 AELGAKAKEFTNVYIKNFGEEMDDESLKELFSQFGKTLSVKVMRD----PNGK 229
Score = 35.8 bits (81), Expect = 5.4, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + +K + V+ A+ E
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|395853070|ref|XP_003799043.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Otolemur
garnettii]
Length = 646
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K I++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 55.1 bits (131), Expect = 9e-06, Method: Composition-based stats.
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 18/103 (17%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE--------------- 76
+ +S G+GFV+Y + EDA KA+ +NG + K I V A+ E
Sbjct: 227 SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQE 286
Query: 77 ---SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
+G NLY+ L + ++L FSP+G I +++++ ++
Sbjct: 287 RISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED 329
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 8/112 (7%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GY FV++ E A+KAI +NG+ L ++ + V +R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ GA N+Y+ + + + L+ LFS +G+ ++ +++ D G
Sbjct: 181 AELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKG 232
Score = 35.8 bits (81), Expect = 5.4, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + +K + V+ A+ E
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|4504715|ref|NP_003810.1| polyadenylate-binding protein 4 isoform 2 [Homo sapiens]
gi|332808510|ref|XP_003308042.1| PREDICTED: polyadenylate-binding protein 4 [Pan troglodytes]
gi|395730716|ref|XP_003775777.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Pongo abelii]
gi|397488844|ref|XP_003815453.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Pan paniscus]
gi|426329066|ref|XP_004025565.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Gorilla
gorilla gorilla]
gi|12229875|sp|Q13310.1|PABP4_HUMAN RecName: Full=Polyadenylate-binding protein 4; Short=PABP-4;
Short=Poly(A)-binding protein 4; AltName:
Full=Activated-platelet protein 1; Short=APP-1; AltName:
Full=Inducible poly(A)-binding protein; Short=iPABP
gi|1163177|gb|AAC50350.1| inducible poly(A)-binding protein [Homo sapiens]
gi|2801403|gb|AAB97309.1| polyadenylate binding protein [Homo sapiens]
gi|119627669|gb|EAX07264.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_d [Homo sapiens]
gi|410227600|gb|JAA11019.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|1585757|prf||2201474A inducible poly(A)-binding protein
Length = 644
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K I++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 18/102 (17%)
Query: 33 AQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE---------------- 76
+S G+GFV+Y + EDA KA+ +NG + K I V A+ E
Sbjct: 228 GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQER 287
Query: 77 --SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
+G NLY+ L + ++L FSP+G I +++++ ++
Sbjct: 288 ISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED 329
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 12/113 (10%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GY FV++ E A+KAI +NG+ L ++ + V +R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGK 123
+ GA N+Y+ + + + L+ LFS +G+ ++ +++ D NGK
Sbjct: 181 AELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD----PNGK 229
Score = 35.8 bits (81), Expect = 5.4, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + +K + V+ A+ E
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|344287653|ref|XP_003415567.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Loxodonta
africana]
Length = 660
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K I++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 55.1 bits (131), Expect = 9e-06, Method: Composition-based stats.
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 18/103 (17%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE--------------- 76
+ +S G+GFV+Y + EDA KA+ +NG + K I V A+ E
Sbjct: 227 SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQE 286
Query: 77 ---SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
+G NLY+ L + ++L FSP+G I +++++ ++
Sbjct: 287 RISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED 329
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 8/112 (7%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GY FV++ E A+KAI +NG+ L ++ + V +R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ GA N+Y+ + + + L+ LFS +G+ ++ +++ D G
Sbjct: 181 AELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKG 232
Score = 35.8 bits (81), Expect = 5.4, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + +K + V+ A+ E
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|332248415|ref|XP_003273359.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Nomascus
leucogenys]
gi|383411101|gb|AFH28764.1| polyadenylate-binding protein 4 isoform 2 [Macaca mulatta]
gi|384941236|gb|AFI34223.1| polyadenylate-binding protein 4 isoform 2 [Macaca mulatta]
Length = 644
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K I++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 18/103 (17%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE--------------- 76
+ +S G+GFV+Y + EDA KA+ +NG + K I V A+ E
Sbjct: 227 SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQE 286
Query: 77 ---SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
+G NLY+ L + ++L FSP+G I +++++ ++
Sbjct: 287 RISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED 329
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 8/112 (7%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GY FV++ E A+KAI +NG+ L ++ + V +R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ GA N+Y+ + + + L+ LFS +G+ ++ +++ D G
Sbjct: 181 AELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKG 232
Score = 35.8 bits (81), Expect = 5.4, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + +K + V+ A+ E
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|149637721|ref|XP_001509272.1| PREDICTED: polyadenylate-binding protein 1-like [Ornithorhynchus
anatinus]
Length = 636
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K +++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 18/102 (17%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE--------------- 76
+ +S G+GFV++ R EDA+KA++ +NG L K I V A+ E
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQD 286
Query: 77 ---SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+G NLYV L + + L FSP+G I +++++ +
Sbjct: 287 RITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME 328
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 8/112 (7%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GYGFV++ E AE+AI +NG+ L ++ + V +R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ GA N+Y+ + M + L+ LF +G ++ +++ D G
Sbjct: 181 AELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKG 232
Score = 35.8 bits (81), Expect = 6.0, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + K + V+ A+ E
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 373
>gi|119627667|gb|EAX07262.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_b [Homo sapiens]
Length = 645
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K I++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 18/102 (17%)
Query: 33 AQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE---------------- 76
+S G+GFV+Y + EDA KA+ +NG + K I V A+ E
Sbjct: 228 GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQER 287
Query: 77 --SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
+G NLY+ L + ++L FSP+G I +++++ ++
Sbjct: 288 ISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED 329
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 12/113 (10%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GY FV++ E A+KAI +NG+ L ++ + V +R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGK 123
+ GA N+Y+ + + + L+ LFS +G+ ++ +++ D NGK
Sbjct: 181 AELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD----PNGK 229
Score = 35.8 bits (81), Expect = 5.4, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + +K + V+ A+ E
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|48734702|gb|AAH71591.1| PABPC4 protein [Homo sapiens]
Length = 660
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K I++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 18/102 (17%)
Query: 33 AQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE---------------- 76
+S G+GFV+Y + EDA KA+ +NG + K I V A+ E
Sbjct: 228 GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQER 287
Query: 77 --SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
+G NLY+ L + ++L FSP+G I +++++ ++
Sbjct: 288 ISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED 329
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 12/113 (10%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GY FV++ E A+KAI +NG+ L ++ + V +R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGK 123
+ GA N+Y+ + + + L+ LFS +G+ ++ +++ D NGK
Sbjct: 181 AELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD----PNGK 229
Score = 35.8 bits (81), Expect = 5.4, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + +K + V+ A+ E
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|326671515|ref|XP_687432.5| PREDICTED: RNA-binding motif, single-stranded-interacting protein
2-like [Danio rerio]
Length = 395
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA+ L +Q + K P+ NLY+S LP
Sbjct: 90 TTNKCKGYGFVDFDSPAAAQKAVTALKSTGVQAQMAKQQEQDPT-------NLYISNLPV 142
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ +G++I++RIL D T G ++ + E+
Sbjct: 143 SMDEQELEAMLKSFGQVISTRILRDANGTSRGVGFARMESTEK 185
>gi|22507391|ref|NP_683717.1| polyadenylate-binding protein 4 isoform 2 [Mus musculus]
gi|16307591|gb|AAH10345.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
Length = 615
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K I++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVMKGKPIRIMWSQRDPSLRKSGVGNVFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 18/104 (17%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE-------------- 76
S+ +S G+GFV+Y + EDA KA+ +NG + K I V A+ E
Sbjct: 226 SSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQ 285
Query: 77 ----SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
+G NLY+ L + ++L FSP+G I +++++ ++
Sbjct: 286 ERISRYQGVNLYIKNLDDTIDDEKLRREFSPFGSITSAKVMLED 329
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 8/112 (7%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GY FV++ E A+KAI +NG+ L ++ + V +R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ GA N+Y+ + + L+ LFS +G+ ++ +++ D+ G
Sbjct: 181 AELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKG 232
Score = 35.8 bits (81), Expect = 5.9, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + +K + V+ A+ E
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|410263250|gb|JAA19591.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 644
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K I++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 18/102 (17%)
Query: 33 AQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE---------------- 76
+S G+GFV+Y + EDA KA+ +NG + K I V A+ E
Sbjct: 228 GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQER 287
Query: 77 --SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
+G NLY+ L + ++L FSP+G I +++++ ++
Sbjct: 288 ISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED 329
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 12/113 (10%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GY FV++ E A+KAI +NG+ L ++ + V +R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGK 123
+ GA N+Y+ + + + L+ LFS +G+ ++ +++ D NGK
Sbjct: 181 AELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD----PNGK 229
Score = 35.8 bits (81), Expect = 5.5, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + +K + V+ A+ E
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|403292060|ref|XP_003937075.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Saimiri
boliviensis boliviensis]
Length = 643
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K I++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 18/102 (17%)
Query: 33 AQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE---------------- 76
+S G+GFV+Y + EDA KA+ +NG + K I V A+ E
Sbjct: 228 GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQER 287
Query: 77 --SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
+G NLY+ L + ++L FSP+G I +++++ ++
Sbjct: 288 ISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED 329
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 12/113 (10%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GY FV++ E A+KAI +NG+ L ++ + V +R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGK 123
+ GA N+Y+ + + + L+ LFS +G+ ++ +++ D NGK
Sbjct: 181 AELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD----PNGK 229
Score = 35.8 bits (81), Expect = 5.5, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + +K + V+ A+ E
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|403292058|ref|XP_003937074.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Saimiri
boliviensis boliviensis]
Length = 659
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K I++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 18/102 (17%)
Query: 33 AQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE---------------- 76
+S G+GFV+Y + EDA KA+ +NG + K I V A+ E
Sbjct: 228 GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQER 287
Query: 77 --SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
+G NLY+ L + ++L FSP+G I +++++ ++
Sbjct: 288 ISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED 329
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 12/113 (10%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GY FV++ E A+KAI +NG+ L ++ + V +R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGK 123
+ GA N+Y+ + + + L+ LFS +G+ ++ +++ D NGK
Sbjct: 181 AELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD----PNGK 229
Score = 35.8 bits (81), Expect = 5.5, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + +K + V+ A+ E
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|402854027|ref|XP_003891682.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Papio anubis]
Length = 660
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K I++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 18/103 (17%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE--------------- 76
+ +S G+GFV+Y + EDA KA+ +NG + K I V A+ E
Sbjct: 227 SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQE 286
Query: 77 ---SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
+G NLY+ L + ++L FSP+G I +++++ ++
Sbjct: 287 RISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED 329
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 8/112 (7%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GY FV++ E A+KAI +NG+ L ++ + V +R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ GA N+Y+ + + + L+ LFS +G+ ++ +++ D G
Sbjct: 181 AELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKG 232
Score = 35.8 bits (81), Expect = 5.5, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + +K + V+ A+ E
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|395853068|ref|XP_003799042.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Otolemur
garnettii]
Length = 662
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K I++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 55.1 bits (131), Expect = 9e-06, Method: Composition-based stats.
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 18/103 (17%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE--------------- 76
+ +S G+GFV+Y + EDA KA+ +NG + K I V A+ E
Sbjct: 227 SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQE 286
Query: 77 ---SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
+G NLY+ L + ++L FSP+G I +++++ ++
Sbjct: 287 RISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED 329
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 8/112 (7%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GY FV++ E A+KAI +NG+ L ++ + V +R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ GA N+Y+ + + + L+ LFS +G+ ++ +++ D G
Sbjct: 181 AELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKG 232
Score = 35.8 bits (81), Expect = 5.5, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + +K + V+ A+ E
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|355745175|gb|EHH49800.1| hypothetical protein EGM_00521 [Macaca fascicularis]
Length = 635
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K I++ +++ PS N+++ L
Sbjct: 23 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLD 82
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 83 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 111
Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 18/103 (17%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE--------------- 76
+ +S G+GFV+Y + EDA KA+ +NG + K I V A+ E
Sbjct: 202 SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQE 261
Query: 77 ---SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
+G NLY+ L + ++L FSP+G I +++++ ++
Sbjct: 262 RISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED 304
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 8/112 (7%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GY FV++ E A+KAI +NG+ L ++ + V +R E
Sbjct: 96 AFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE 155
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ GA N+Y+ + + + L+ LFS +G+ ++ +++ D G
Sbjct: 156 AELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKG 207
Score = 35.8 bits (81), Expect = 5.5, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + +K + V+ A+ E
Sbjct: 301 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE 348
>gi|338721949|ref|XP_003364451.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Equus
caballus]
Length = 660
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K I++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 55.1 bits (131), Expect = 9e-06, Method: Composition-based stats.
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 18/103 (17%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE--------------- 76
+ +S G+GFV+Y + EDA KA+ +NG + K I V A+ E
Sbjct: 227 SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQE 286
Query: 77 ---SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
+G NLY+ L + ++L FSP+G I +++++ ++
Sbjct: 287 RISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED 329
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 8/112 (7%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GY FV++ E A+KAI +NG+ L ++ + V +R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ GA N+Y+ + + + L+ LFS +G+ ++ +++ D G
Sbjct: 181 AELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKG 232
Score = 35.8 bits (81), Expect = 5.5, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + +K + V+ A+ E
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|332248413|ref|XP_003273358.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Nomascus
leucogenys]
gi|355557859|gb|EHH14639.1| hypothetical protein EGK_00600 [Macaca mulatta]
gi|383411103|gb|AFH28765.1| polyadenylate-binding protein 4 isoform 1 [Macaca mulatta]
gi|384941238|gb|AFI34224.1| polyadenylate-binding protein 4 isoform 1 [Macaca mulatta]
Length = 660
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K I++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 18/103 (17%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE--------------- 76
+ +S G+GFV+Y + EDA KA+ +NG + K I V A+ E
Sbjct: 227 SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQE 286
Query: 77 ---SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
+G NLY+ L + ++L FSP+G I +++++ ++
Sbjct: 287 RISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED 329
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 8/112 (7%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GY FV++ E A+KAI +NG+ L ++ + V +R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ GA N+Y+ + + + L+ LFS +G+ ++ +++ D G
Sbjct: 181 AELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKG 232
Score = 35.8 bits (81), Expect = 5.5, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + +K + V+ A+ E
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|297283068|ref|XP_001113342.2| PREDICTED: polyadenylate-binding protein 4 [Macaca mulatta]
Length = 657
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K I++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 18/103 (17%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE--------------- 76
+ +S G+GFV+Y + EDA KA+ +NG + K I V A+ E
Sbjct: 224 SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQE 283
Query: 77 ---SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
+G NLY+ L + ++L FSP+G I +++++ ++
Sbjct: 284 RISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED 326
Score = 40.4 bits (93), Expect = 0.26, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 8/92 (8%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GY FV++ E A+KAI +NG+ L ++ + V +R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFS 102
+ GA N+Y+ + + + L+ LFS
Sbjct: 181 AELGAKAKEFTNVYIKNFGEEVDDESLKELFS 212
Score = 35.8 bits (81), Expect = 5.5, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + +K + V+ A+ E
Sbjct: 323 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE 370
>gi|149693775|ref|XP_001503500.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Equus
caballus]
Length = 644
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K I++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 55.1 bits (131), Expect = 9e-06, Method: Composition-based stats.
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 18/103 (17%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE--------------- 76
+ +S G+GFV+Y + EDA KA+ +NG + K I V A+ E
Sbjct: 227 SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQE 286
Query: 77 ---SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
+G NLY+ L + ++L FSP+G I +++++ ++
Sbjct: 287 RISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED 329
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 8/112 (7%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GY FV++ E A+KAI +NG+ L ++ + V +R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ GA N+Y+ + + + L+ LFS +G+ ++ +++ D G
Sbjct: 181 AELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKG 232
Score = 35.8 bits (81), Expect = 5.5, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + +K + V+ A+ E
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|119627673|gb|EAX07268.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_h [Homo sapiens]
Length = 661
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K I++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 18/102 (17%)
Query: 33 AQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE---------------- 76
+S G+GFV+Y + EDA KA+ +NG + K I V A+ E
Sbjct: 228 GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQER 287
Query: 77 --SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
+G NLY+ L + ++L FSP+G I +++++ ++
Sbjct: 288 ISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED 329
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 12/113 (10%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GY FV++ E A+KAI +NG+ L ++ + V +R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGK 123
+ GA N+Y+ + + + L+ LFS +G+ ++ +++ D NGK
Sbjct: 181 AELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD----PNGK 229
Score = 35.8 bits (81), Expect = 5.5, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + +K + V+ A+ E
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|208431833|ref|NP_001129125.1| polyadenylate-binding protein 4 isoform 1 [Homo sapiens]
gi|332808508|ref|XP_513344.3| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Pan
troglodytes]
gi|395730714|ref|XP_002811047.2| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Pongo abelii]
gi|397488842|ref|XP_003815452.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Pan paniscus]
gi|426329062|ref|XP_004025563.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Gorilla
gorilla gorilla]
gi|66267552|gb|AAH94755.1| PABPC4 protein [Homo sapiens]
gi|119627668|gb|EAX07263.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_c [Homo sapiens]
gi|410227598|gb|JAA11018.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|410227604|gb|JAA11021.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 660
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K I++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 18/102 (17%)
Query: 33 AQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE---------------- 76
+S G+GFV+Y + EDA KA+ +NG + K I V A+ E
Sbjct: 228 GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQER 287
Query: 77 --SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
+G NLY+ L + ++L FSP+G I +++++ ++
Sbjct: 288 ISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED 329
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 12/113 (10%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GY FV++ E A+KAI +NG+ L ++ + V +R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGK 123
+ GA N+Y+ + + + L+ LFS +G+ ++ +++ D NGK
Sbjct: 181 AELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD----PNGK 229
Score = 35.8 bits (81), Expect = 5.5, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + +K + V+ A+ E
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|74212334|dbj|BAE30919.1| unnamed protein product [Mus musculus]
Length = 636
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K +++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 31/101 (30%), Positives = 50/101 (49%), Gaps = 18/101 (17%)
Query: 33 AQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE---------------- 76
+S G+GFV++ R EDA+KA++ +NG L K I V A+ E
Sbjct: 228 GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDR 287
Query: 77 --SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+G NLYV L + + L FSP+G I +++++ +
Sbjct: 288 ITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME 328
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 8/112 (7%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GYGFV++ E AE+AI +NG+ L ++ + V +R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ GA N+Y+ + M + L+ LF +G ++ +++ D G
Sbjct: 181 AELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDEGGKSKG 232
Score = 35.8 bits (81), Expect = 6.0, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + K + V+ A+ E
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 373
>gi|53754|emb|CAA46522.1| poly(A) binding protein [Mus musculus]
Length = 636
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K +++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 18/102 (17%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE--------------- 76
+ +S G+GFV++ R EDA+KA++ +NG L K I V A+ E
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQD 286
Query: 77 ---SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+G NLYV L + + L FSP+G I +++++ +
Sbjct: 287 RITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME 328
Score = 48.9 bits (115), Expect = 7e-04, Method: Composition-based stats.
Identities = 27/112 (24%), Positives = 51/112 (45%), Gaps = 8/112 (7%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE-- 76
F + C + S GYGFV++ E AE+AI +NG+ L ++ + V + E
Sbjct: 121 AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSQKERE 180
Query: 77 ------SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ + N+Y+ + M + L+ LF +G ++ +++ D G
Sbjct: 181 AELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKG 232
Score = 35.8 bits (81), Expect = 6.0, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + K + V+ A+ E
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 373
>gi|297802580|ref|XP_002869174.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297315010|gb|EFH45433.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 625
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/95 (32%), Positives = 53/95 (55%), Gaps = 2/95 (2%)
Query: 30 ISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSG 87
++T +SLGYG+VN+ P+DA +AI LN + L K I+V Y+ PS N+++
Sbjct: 71 LATRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKN 130
Query: 88 LPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
L + + + L FS +G I++ ++ D+ G
Sbjct: 131 LDESIDHKALHDTFSVFGNIVSCKVAVDSSGQSKG 165
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 31/108 (28%), Positives = 54/108 (50%), Gaps = 18/108 (16%)
Query: 33 AQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE---------------- 76
+S G+GFVN+ +DA +A+ +LNG + +K V A+ SE
Sbjct: 252 GKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEA 311
Query: 77 --SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ +NLYV L +S ++L+ +FSP+G + + +++ D T G
Sbjct: 312 ADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSCKVMRDPNGTSKG 359
Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 6/98 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVS-YAR-----PSSESIKGANLY 84
S+ QS GYGFV Y E A+KAI LNG+ L +K + V + R ++ K N+Y
Sbjct: 159 SSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVY 218
Query: 85 VSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
V L + + +L++ F YG+I ++ ++ D G
Sbjct: 219 VKNLAESTTDDDLKNAFGEYGKITSAVVMKDGDGKSKG 256
>gi|410263248|gb|JAA19590.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|410263254|gb|JAA19593.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 660
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K I++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 18/102 (17%)
Query: 33 AQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE---------------- 76
+S G+GFV+Y + EDA KA+ +NG + K I V A+ E
Sbjct: 228 GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQER 287
Query: 77 --SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
+G NLY+ L + ++L FSP+G I +++++ ++
Sbjct: 288 ISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED 329
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 12/113 (10%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GY FV++ E A+KAI +NG+ L ++ + V +R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGK 123
+ GA N+Y+ + + + L+ LFS +G+ ++ +++ D NGK
Sbjct: 181 AELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD----PNGK 229
Score = 35.8 bits (81), Expect = 5.7, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + +K + V+ A+ E
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|149023880|gb|EDL80377.1| rCG31475, isoform CRA_c [Rattus norvegicus]
Length = 630
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K I++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 55.8 bits (133), Expect = 5e-06, Method: Composition-based stats.
Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 18/103 (17%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE--------------- 76
+ +S G+GFV+Y + EDA KA+ +NG + K+I V A+ E
Sbjct: 227 SGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQE 286
Query: 77 ---SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
+G NLY+ L + ++L FSP+G I +++++ ++
Sbjct: 287 RISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED 329
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 8/105 (7%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GY FV++ E A KAI +NG+ L ++ + V +R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+ GA N+Y+ + + + L LFS +G+ ++ +++ D
Sbjct: 181 AELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRD 225
Score = 35.8 bits (81), Expect = 5.7, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + +K + V+ A+ E
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|148698435|gb|EDL30382.1| mCG5546, isoform CRA_a [Mus musculus]
Length = 632
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K I++ +++ PS N+++ L
Sbjct: 65 TRRSLGYAYVNFQQPADAERALDTMNFDVMKGKPIRIMWSQRDPSLRKSGVGNVFIKNLD 124
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 125 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 153
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 18/104 (17%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE-------------- 76
S+ +S G+GFV+Y + EDA KA+ +NG + K I V A+ E
Sbjct: 243 SSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQ 302
Query: 77 ----SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
+G NLY+ L + ++L FSP+G I +++++ ++
Sbjct: 303 ERISRYQGVNLYIKNLDDTIDDEKLRREFSPFGSITSAKVMLED 346
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 8/112 (7%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GY FV++ E A+KAI +NG+ L ++ + V +R E
Sbjct: 138 AFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE 197
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ GA N+Y+ + + L+ LFS +G+ ++ +++ D+ G
Sbjct: 198 AELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKG 249
Score = 35.8 bits (81), Expect = 6.1, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + +K + V+ A+ E
Sbjct: 343 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE 390
>gi|26354649|dbj|BAC40951.1| unnamed protein product [Mus musculus]
Length = 636
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K +++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 18/102 (17%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE--------------- 76
+ +S G+GFV++ R EDA+KA++ +NG L K I V A+ E
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQD 286
Query: 77 ---SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+G NLYV L + + L FSP+G I +++++ +
Sbjct: 287 RITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME 328
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 8/112 (7%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GYGFV++ E AE+AI +NG+ L ++ + V +R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIKKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ GA N+Y+ + M + L+ LF +G ++ +++ D G
Sbjct: 181 AELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKG 232
Score = 35.8 bits (81), Expect = 6.1, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + K + V+ A+ E
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 373
>gi|31560656|ref|NP_032800.2| polyadenylate-binding protein 1 [Mus musculus]
gi|341941223|sp|P29341.2|PABP1_MOUSE RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|13278026|gb|AAH03870.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|15029950|gb|AAH11207.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|18606321|gb|AAH23145.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|26336853|dbj|BAC32110.1| unnamed protein product [Mus musculus]
gi|29145018|gb|AAH46233.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|74144576|dbj|BAE36120.1| unnamed protein product [Mus musculus]
gi|74145579|dbj|BAE36203.1| unnamed protein product [Mus musculus]
gi|74179929|dbj|BAE36522.1| unnamed protein product [Mus musculus]
gi|74198265|dbj|BAE35302.1| unnamed protein product [Mus musculus]
gi|74198320|dbj|BAE35327.1| unnamed protein product [Mus musculus]
gi|74214225|dbj|BAE40360.1| unnamed protein product [Mus musculus]
gi|74223327|dbj|BAE21553.1| unnamed protein product [Mus musculus]
gi|148676871|gb|EDL08818.1| poly A binding protein, cytoplasmic 1 [Mus musculus]
Length = 636
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K +++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 18/102 (17%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE--------------- 76
+ +S G+GFV++ R EDA+KA++ +NG L K I V A+ E
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQD 286
Query: 77 ---SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+G NLYV L + + L FSP+G I +++++ +
Sbjct: 287 RITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME 328
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 8/112 (7%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GYGFV++ E AE+AI +NG+ L ++ + V +R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ GA N+Y+ + M + L+ LF +G ++ +++ D G
Sbjct: 181 AELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKG 232
Score = 35.8 bits (81), Expect = 6.1, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + K + V+ A+ E
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 373
>gi|386780450|dbj|BAM15222.1| poly(A)-binding protein [Nicotiana tabacum]
Length = 657
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 2/95 (2%)
Query: 30 ISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSG 87
+ST +SLGYG+VNY P DA +A+ LN + K+I+V Y+ P+ AN+++
Sbjct: 73 LSTRRSLGYGYVNYSNPNDASRAMEMLNFTPVNGKSIRVMYSHRDPTLRKSGSANIFIKN 132
Query: 88 LPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
L K + + L FS +G I++ +I D+ G
Sbjct: 133 LDKSIDNKALHDTFSSFGNILSCKIATDSNGQSKG 167
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 49/91 (53%), Gaps = 6/91 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSESIKG----ANLY 84
S QS GYGFV Y E A+ AI+ LNG+ + +K + V + + ES G N+Y
Sbjct: 161 SNGQSKGYGFVQYDNEESAQGAIDKLNGMLMNDKQVYVGHFLRKQERESTTGMTKFQNVY 220
Query: 85 VSGLPKHMSQQELESLFSPYGRIITSRILCD 115
V L + + EL+ +F +G I ++ ++ D
Sbjct: 221 VKNLSESTTDDELKKVFGEFGNITSAVVMRD 251
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 55/129 (42%), Gaps = 18/129 (13%)
Query: 26 CVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE--------- 76
V + +S +GF+N+ EDA KA+ +LNG + +K V A+ SE
Sbjct: 247 VVMRDADGKSKCFGFINFETAEDAAKAVESLNGKKFDDKEWYVGKAQKKSEREQELKSKF 306
Query: 77 ---------SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSG 127
+G NLYV L + ++L+ LFS +G I + +++ D G +
Sbjct: 307 EQTAKEAVDKYQGLNLYVKNLDDTIDDEKLKELFSEFGTITSCKVMRDPSGISRGSGFVA 366
Query: 128 LGGRERLRR 136
E R
Sbjct: 367 FSTSEEASR 375
>gi|224081795|ref|XP_002196994.1| PREDICTED: polyadenylate-binding protein 4 [Taeniopygia guttata]
Length = 629
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K I++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 27/103 (26%), Positives = 52/103 (50%), Gaps = 18/103 (17%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE--------------- 76
T +S G+GFV++ + E+A KA+ +NG + K + V A+ +E
Sbjct: 227 TGKSKGFGFVSFEKHEEANKAVEEMNGKDINGKMLFVGRAQKKAERQAELKRRFEQLKQE 286
Query: 77 ---SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
+G NLY+ L + ++L FSP+G I +++++ ++
Sbjct: 287 RLSRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED 329
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 52/112 (46%), Gaps = 8/112 (7%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GY FV++ + A++AI +NG+ L ++ + V +R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ GA N+Y+ M + L+ LF YG+ ++ +++ D G
Sbjct: 181 AELGAKAKEFTNVYIKNFGDDMDDERLKELFGKYGKTLSVKVMTDPTGKSKG 232
Score = 35.8 bits (81), Expect = 5.7, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + +K + V+ A+ E
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|426215230|ref|XP_004001877.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Ovis aries]
Length = 631
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K I++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 18/103 (17%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE--------------- 76
+ +S G+GFV+Y + EDA KA+ +NG + K I V A+ E
Sbjct: 227 SGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQE 286
Query: 77 ---SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
+G NLY+ L + ++L FSP+G I +++++ ++
Sbjct: 287 RISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED 329
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 8/112 (7%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GY FV++ E A+KAI +NG+ L ++ + V +R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ GA N+Y+ + + + L+ LFS +G+ ++ +++ D G
Sbjct: 181 AELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKG 232
Score = 35.8 bits (81), Expect = 5.7, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + +K + V+ A+ E
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|149023878|gb|EDL80375.1| rCG31475, isoform CRA_a [Rattus norvegicus]
Length = 660
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K I++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 55.8 bits (133), Expect = 5e-06, Method: Composition-based stats.
Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 18/103 (17%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE--------------- 76
+ +S G+GFV+Y + EDA KA+ +NG + K+I V A+ E
Sbjct: 227 SGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQE 286
Query: 77 ---SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
+G NLY+ L + ++L FSP+G I +++++ ++
Sbjct: 287 RISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED 329
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 8/105 (7%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GY FV++ E A KAI +NG+ L ++ + V +R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+ GA N+Y+ + + + L LFS +G+ ++ +++ D
Sbjct: 181 AELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRD 225
Score = 35.8 bits (81), Expect = 5.7, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + +K + V+ A+ E
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|348552998|ref|XP_003462314.1| PREDICTED: polyadenylate-binding protein 4-like isoform 3 [Cavia
porcellus]
Length = 615
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K I++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 18/103 (17%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE--------------- 76
+ +S G+GFV+Y + EDA KA+ +NG + K I V A+ E
Sbjct: 227 SGKSKGFGFVSYEKHEDANKAVEEMNGKEINGKIIFVGRAQKKVERQAELKRKFEQLKQE 286
Query: 77 ---SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
+G NLY+ L + ++L FSP+G I +++++ ++
Sbjct: 287 RISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED 329
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 8/112 (7%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GY FV++ E A+KAI +NG+ L ++ + V +R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ GA N+Y+ + + + L+ LFS +G+ ++ +++ D G
Sbjct: 181 AELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKG 232
Score = 35.8 bits (81), Expect = 5.7, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + +K + V+ A+ E
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|193787802|dbj|BAG53005.1| unnamed protein product [Homo sapiens]
Length = 636
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K +++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 57.8 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 18/102 (17%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE--------------- 76
+ +S G+GFV++ R EDA+KA++ +NG L K I V A+ E
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQD 286
Query: 77 ---SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+G NLYV L ++ + L FSP+G I +++++ +
Sbjct: 287 RITRYQGVNLYVKNLDDGINDERLRKEFSPFGTITSAKVMME 328
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 8/112 (7%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GYGFV++ E AE+AI +NG+ L ++ + V +R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ GA N+Y+ + M + L+ LF +G ++ +++ D G
Sbjct: 181 AELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGAALSVKVMTDESGKSKG 232
Score = 35.8 bits (81), Expect = 6.1, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + K + V+ A+ E
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 373
>gi|198386356|ref|NP_001094008.1| polyadenylate-binding protein 4 [Rattus norvegicus]
gi|183985833|gb|AAI66452.1| Pabpc4 protein [Rattus norvegicus]
Length = 644
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K I++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 55.8 bits (133), Expect = 5e-06, Method: Composition-based stats.
Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 18/103 (17%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE--------------- 76
+ +S G+GFV+Y + EDA KA+ +NG + K+I V A+ E
Sbjct: 227 SGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQE 286
Query: 77 ---SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
+G NLY+ L + ++L FSP+G I +++++ ++
Sbjct: 287 RISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED 329
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 8/105 (7%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GY FV++ E A KAI +NG+ L ++ + V +R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+ GA N+Y+ + + + L LFS +G+ ++ +++ D
Sbjct: 181 AELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRD 225
Score = 35.8 bits (81), Expect = 5.7, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + +K + V+ A+ E
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|327283838|ref|XP_003226647.1| PREDICTED: polyadenylate-binding protein 1-like [Anolis
carolinensis]
Length = 636
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K +++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 18/102 (17%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE--------------- 76
+ +S G+GFV++ R EDA+KA++ +NG L K I V A+ E
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQD 286
Query: 77 ---SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+G NLYV L + + L FSP+G I +++++ +
Sbjct: 287 RITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME 328
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 8/112 (7%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GYGFV++ E AE+AI +NG+ L ++ + V +R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ GA N+Y+ + M + L+ LF +G ++ +++ D G
Sbjct: 181 AELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKG 232
Score = 35.8 bits (81), Expect = 6.0, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + K + V+ A+ E
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 373
>gi|410966844|ref|XP_003989937.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Felis catus]
Length = 631
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K I++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 55.1 bits (131), Expect = 9e-06, Method: Composition-based stats.
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 18/103 (17%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE--------------- 76
+ +S G+GFV+Y + EDA KA+ +NG + K I V A+ E
Sbjct: 227 SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQE 286
Query: 77 ---SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
+G NLY+ L + ++L FSP+G I +++++ ++
Sbjct: 287 RISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED 329
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 8/112 (7%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GY FV++ E A+KAI +NG+ L ++ + V +R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ GA N+Y+ + + + L+ LFS +G+ ++ +++ D G
Sbjct: 181 AELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKG 232
Score = 35.8 bits (81), Expect = 5.7, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + +K + V+ A+ E
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|348553000|ref|XP_003462315.1| PREDICTED: polyadenylate-binding protein 4-like isoform 4 [Cavia
porcellus]
Length = 631
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K I++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 18/103 (17%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE--------------- 76
+ +S G+GFV+Y + EDA KA+ +NG + K I V A+ E
Sbjct: 227 SGKSKGFGFVSYEKHEDANKAVEEMNGKEINGKIIFVGRAQKKVERQAELKRKFEQLKQE 286
Query: 77 ---SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
+G NLY+ L + ++L FSP+G I +++++ ++
Sbjct: 287 RISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED 329
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 8/112 (7%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GY FV++ E A+KAI +NG+ L ++ + V +R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ GA N+Y+ + + + L+ LFS +G+ ++ +++ D G
Sbjct: 181 AELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKG 232
Score = 35.8 bits (81), Expect = 5.7, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + +K + V+ A+ E
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|402854031|ref|XP_003891684.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Papio anubis]
Length = 631
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K I++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 18/103 (17%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE--------------- 76
+ +S G+GFV+Y + EDA KA+ +NG + K I V A+ E
Sbjct: 227 SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQE 286
Query: 77 ---SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
+G NLY+ L + ++L FSP+G I +++++ ++
Sbjct: 287 RISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED 329
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 8/112 (7%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GY FV++ E A+KAI +NG+ L ++ + V +R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ GA N+Y+ + + + L+ LFS +G+ ++ +++ D G
Sbjct: 181 AELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKG 232
Score = 35.8 bits (81), Expect = 5.7, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + +K + V+ A+ E
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|395853072|ref|XP_003799044.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Otolemur
garnettii]
Length = 633
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K I++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 55.1 bits (131), Expect = 9e-06, Method: Composition-based stats.
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 18/103 (17%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE--------------- 76
+ +S G+GFV+Y + EDA KA+ +NG + K I V A+ E
Sbjct: 227 SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQE 286
Query: 77 ---SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
+G NLY+ L + ++L FSP+G I +++++ ++
Sbjct: 287 RISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED 329
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 8/112 (7%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GY FV++ E A+KAI +NG+ L ++ + V +R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ GA N+Y+ + + + L+ LFS +G+ ++ +++ D G
Sbjct: 181 AELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKG 232
Score = 35.8 bits (81), Expect = 5.7, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + +K + V+ A+ E
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|344287655|ref|XP_003415568.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Loxodonta
africana]
Length = 631
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K I++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 55.1 bits (131), Expect = 9e-06, Method: Composition-based stats.
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 18/103 (17%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE--------------- 76
+ +S G+GFV+Y + EDA KA+ +NG + K I V A+ E
Sbjct: 227 SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQE 286
Query: 77 ---SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
+G NLY+ L + ++L FSP+G I +++++ ++
Sbjct: 287 RISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED 329
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 8/112 (7%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GY FV++ E A+KAI +NG+ L ++ + V +R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ GA N+Y+ + + + L+ LFS +G+ ++ +++ D G
Sbjct: 181 AELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKG 232
Score = 35.8 bits (81), Expect = 5.7, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + +K + V+ A+ E
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|338721952|ref|XP_003364452.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Equus
caballus]
Length = 631
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K I++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 55.1 bits (131), Expect = 9e-06, Method: Composition-based stats.
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 18/103 (17%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE--------------- 76
+ +S G+GFV+Y + EDA KA+ +NG + K I V A+ E
Sbjct: 227 SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQE 286
Query: 77 ---SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
+G NLY+ L + ++L FSP+G I +++++ ++
Sbjct: 287 RISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED 329
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 8/112 (7%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GY FV++ E A+KAI +NG+ L ++ + V +R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ GA N+Y+ + + + L+ LFS +G+ ++ +++ D G
Sbjct: 181 AELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKG 232
Score = 35.8 bits (81), Expect = 5.7, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + +K + V+ A+ E
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|332248417|ref|XP_003273360.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Nomascus
leucogenys]
gi|383411099|gb|AFH28763.1| polyadenylate-binding protein 4 isoform 3 [Macaca mulatta]
gi|384941234|gb|AFI34222.1| polyadenylate-binding protein 4 isoform 3 [Macaca mulatta]
Length = 631
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K I++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 18/103 (17%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE--------------- 76
+ +S G+GFV+Y + EDA KA+ +NG + K I V A+ E
Sbjct: 227 SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQE 286
Query: 77 ---SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
+G NLY+ L + ++L FSP+G I +++++ ++
Sbjct: 287 RISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED 329
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 8/112 (7%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GY FV++ E A+KAI +NG+ L ++ + V +R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ GA N+Y+ + + + L+ LFS +G+ ++ +++ D G
Sbjct: 181 AELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKG 232
Score = 35.8 bits (81), Expect = 5.7, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + +K + V+ A+ E
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|208431836|ref|NP_001129126.1| polyadenylate-binding protein 4 isoform 3 [Homo sapiens]
gi|332808512|ref|XP_003308043.1| PREDICTED: polyadenylate-binding protein 4 [Pan troglodytes]
gi|395730718|ref|XP_003775778.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Pongo abelii]
gi|426329064|ref|XP_004025564.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Gorilla
gorilla gorilla]
gi|119627671|gb|EAX07266.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_f [Homo sapiens]
gi|410227602|gb|JAA11020.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 631
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K I++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 18/102 (17%)
Query: 33 AQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE---------------- 76
+S G+GFV+Y + EDA KA+ +NG + K I V A+ E
Sbjct: 228 GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQER 287
Query: 77 --SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
+G NLY+ L + ++L FSP+G I +++++ ++
Sbjct: 288 ISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED 329
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 12/113 (10%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GY FV++ E A+KAI +NG+ L ++ + V +R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGK 123
+ GA N+Y+ + + + L+ LFS +G+ ++ +++ D NGK
Sbjct: 181 AELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD----PNGK 229
Score = 35.8 bits (81), Expect = 5.7, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + +K + V+ A+ E
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|119627670|gb|EAX07265.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_e [Homo sapiens]
Length = 615
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K I++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 18/102 (17%)
Query: 33 AQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE---------------- 76
+S G+GFV+Y + EDA KA+ +NG + K I V A+ E
Sbjct: 228 GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQER 287
Query: 77 --SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
+G NLY+ L + ++L FSP+G I +++++ ++
Sbjct: 288 ISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED 329
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 12/113 (10%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GY FV++ E A+KAI +NG+ L ++ + V +R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGK 123
+ GA N+Y+ + + + L+ LFS +G+ ++ +++ D NGK
Sbjct: 181 AELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD----PNGK 229
Score = 35.8 bits (81), Expect = 5.7, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + +K + V+ A+ E
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|19705459|ref|NP_599180.1| polyadenylate-binding protein 1 [Rattus norvegicus]
gi|47605941|sp|Q9EPH8.1|PABP1_RAT RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|12188891|emb|CAC21554.1| poly(A) binding protein [Rattus norvegicus]
gi|52789215|gb|AAH83176.1| Poly(A) binding protein, cytoplasmic 1 [Rattus norvegicus]
gi|149066519|gb|EDM16392.1| rCG60104 [Rattus norvegicus]
Length = 636
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K +++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 18/102 (17%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE--------------- 76
+ +S G+GFV++ R EDA+KA++ +NG L K I V A+ E
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQD 286
Query: 77 ---SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+G NLYV L + + L FSP+G I +++++ +
Sbjct: 287 RITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME 328
Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 8/112 (7%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GYGFV++ E AE+AI +NG+ L ++ + V +R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ GA N+Y+ + M + L+ LF +G ++ +++ D G
Sbjct: 181 AELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKG 232
Score = 35.8 bits (81), Expect = 6.1, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + K + V+ A+ E
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 373
>gi|693937|emb|CAA88401.1| polyadenylate binding protein II [Homo sapiens]
Length = 522
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K +++ +++ PS N+++ L
Sbjct: 23 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLD 82
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 83 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 111
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 18/102 (17%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE--------------- 76
+ +S G+GFV++ R EDA+KA++ +NG L K I V A+ E
Sbjct: 202 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQD 261
Query: 77 ---SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+G NLYV L + + L FSP+G I +++++ +
Sbjct: 262 RITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME 303
Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 8/112 (7%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GYGFV++ E AE+AI +NG+ L ++ + V +R E
Sbjct: 96 AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE 155
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ GA N+Y+ + M + L+ LF +G ++ +++ D G
Sbjct: 156 AELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKG 207
Score = 35.8 bits (81), Expect = 6.1, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + K + V+ A+ E
Sbjct: 301 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 348
>gi|24658237|ref|NP_729055.1| alan shepard, isoform B [Drosophila melanogaster]
gi|24658244|ref|NP_729056.1| alan shepard, isoform D [Drosophila melanogaster]
gi|23095748|gb|AAF50790.2| alan shepard, isoform B [Drosophila melanogaster]
gi|23095749|gb|AAN12240.1| alan shepard, isoform D [Drosophila melanogaster]
Length = 499
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 33/100 (33%), Positives = 57/100 (57%), Gaps = 4/100 (4%)
Query: 38 YGFVNYHRPEDAEKAINTLNGLRLQNKTIKVS---YARPSSESIKG-ANLYVSGLPKHMS 93
YGFV++ +P AE A+ L G +Q + KV RP+ + + NLY++ LP H
Sbjct: 177 YGFVDFEQPAFAECAVKGLQGKGVQAQMAKVGIWVLHRPAIQQEQDPTNLYIANLPPHFK 236
Query: 94 QQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
+ +LE++ S YG+++++RIL D G ++ + RE+
Sbjct: 237 ETDLEAMLSKYGQVVSTRILRDQQMNSKGVGFARMESREK 276
>gi|403292062|ref|XP_003937076.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Saimiri
boliviensis boliviensis]
Length = 630
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K I++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 18/102 (17%)
Query: 33 AQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE---------------- 76
+S G+GFV+Y + EDA KA+ +NG + K I V A+ E
Sbjct: 228 GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQER 287
Query: 77 --SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
+G NLY+ L + ++L FSP+G I +++++ ++
Sbjct: 288 ISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED 329
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 12/113 (10%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GY FV++ E A+KAI +NG+ L ++ + V +R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGK 123
+ GA N+Y+ + + + L+ LFS +G+ ++ +++ D NGK
Sbjct: 181 AELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD----PNGK 229
Score = 35.8 bits (81), Expect = 5.7, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + +K + V+ A+ E
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|387017716|gb|AFJ50976.1| Polyadenylate-binding protein 1-like [Crotalus adamanteus]
Length = 636
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K +++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 18/102 (17%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE--------------- 76
+ +S G+GFV++ R EDA+KA++ +NG L K I V A+ E
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQD 286
Query: 77 ---SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+G NLYV L + + L FSP+G I +++++ +
Sbjct: 287 RITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME 328
Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 8/112 (7%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GYGFV++ E AE+AI +NG+ L ++ + V +R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ GA N+Y+ + M + L+ LF +G ++ +++ D G
Sbjct: 181 AELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKG 232
Score = 35.8 bits (81), Expect = 6.2, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + K + V+ A+ E
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 373
>gi|356499763|ref|XP_003518706.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 646
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 54/95 (56%), Gaps = 2/95 (2%)
Query: 30 ISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSG 87
+++ +SLGYG+VN+ P+DA +A++ LN L N+ I++ Y+ PS N+++
Sbjct: 63 LTSRRSLGYGYVNFSNPQDAARALDVLNFTPLNNRPIRIMYSHRDPSIRKSGQGNIFIKN 122
Query: 88 LPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
L + + + L FS +G I++ ++ D+ G
Sbjct: 123 LDRAIDHKALHDTFSTFGNILSCKVATDSSGQSKG 157
Score = 56.2 bits (134), Expect = 5e-06, Method: Composition-based stats.
Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 18/101 (17%)
Query: 33 AQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE---------------- 76
+S +GFVN+ +DA +A+ LNG + +K V A+ SE
Sbjct: 244 GKSKCFGFVNFENADDAARAVEALNGKKFDDKEWYVGKAQKKSERENELKQRFEQSMKEA 303
Query: 77 --SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+GANLYV L + +L+ LFSP+G I + +++ D
Sbjct: 304 ADKYQGANLYVKNLDDSLGDDKLKELFSPFGTITSCKVMRD 344
Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 52/91 (57%), Gaps = 6/91 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVS-YAR-----PSSESIKGANLY 84
S+ QS GYGFV + E A+KAI LNG+ L +K + V + R +++ K N++
Sbjct: 151 SSGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGPFLRKQERESTADKAKFNNVF 210
Query: 85 VSGLPKHMSQQELESLFSPYGRIITSRILCD 115
V L + + EL+++F +G I ++ ++ D
Sbjct: 211 VKNLSESTTDDELKNVFGEFGTITSAVVMRD 241
>gi|257215878|emb|CAX83091.1| ELAV-like protein 1 (Hu-antigen R) [Schistosoma japonicum]
Length = 301
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 48/86 (55%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
++ S G+GF Y A KAI NG R+ +K +KVS A+ + +NLYV P
Sbjct: 43 NSGSSFGFGFCEYEDSCSAHKAITRFNGYRIADKVLKVSLAKLQGRLCQSSNLYVKNFPP 102
Query: 91 HMSQQELESLFSPYGRIITSRILCDN 116
+++ +L + F +GR+I RIL D+
Sbjct: 103 TLTEDDLAAEFGQFGRVIQCRILRDH 128
>gi|224046575|ref|XP_002200268.1| PREDICTED: polyadenylate-binding protein 1 [Taeniopygia guttata]
Length = 637
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K +++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 18/102 (17%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE--------------- 76
+ +S G+GFV++ R EDA+KA++ +NG L K I V A+ E
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQD 286
Query: 77 ---SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+G NLYV L + + L FSP+G I +++++ +
Sbjct: 287 RITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME 328
Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 8/112 (7%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GYGFV++ E AE+AI +NG+ L ++ + V +R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ GA N+Y+ + M + L+ LF +G ++ +++ D G
Sbjct: 181 AELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKG 232
Score = 35.8 bits (81), Expect = 6.2, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + K + V+ A+ E
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 373
>gi|119612224|gb|EAW91818.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_d [Homo
sapiens]
Length = 472
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K +++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 18/102 (17%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE--------------- 76
+ +S G+GFV++ R EDA+KA++ +NG L K I V A+ E
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQD 286
Query: 77 ---SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+G NLYV L + + L FSP+G I +++++ +
Sbjct: 287 RITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME 328
Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 8/112 (7%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GYGFV++ E AE+AI +NG+ L ++ + V +R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ GA N+Y+ + M + L+ LF +G ++ +++ D G
Sbjct: 181 AELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKG 232
Score = 35.8 bits (81), Expect = 6.2, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + K + V+ A+ E
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 373
>gi|149023879|gb|EDL80376.1| rCG31475, isoform CRA_b [Rattus norvegicus]
Length = 656
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K I++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 55.8 bits (133), Expect = 6e-06, Method: Composition-based stats.
Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 18/103 (17%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE--------------- 76
+ +S G+GFV+Y + EDA KA+ +NG + K+I V A+ E
Sbjct: 227 SGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQE 286
Query: 77 ---SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
+G NLY+ L + ++L FSP+G I +++++ ++
Sbjct: 287 RISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED 329
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 8/105 (7%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GY FV++ E A KAI +NG+ L ++ + V +R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+ GA N+Y+ + + + L LFS +G+ ++ +++ D
Sbjct: 181 AELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRD 225
Score = 35.8 bits (81), Expect = 5.8, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + +K + V+ A+ E
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|6102944|emb|CAB59276.1| hypothetical protein [Homo sapiens]
Length = 367
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 51/87 (58%), Gaps = 2/87 (2%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKG--ANLYVSGLP 89
T LGYG+VN+ P DAE A+NT+N + K ++ +++P K N+++ L
Sbjct: 40 TRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLD 99
Query: 90 KHMSQQELESLFSPYGRIITSRILCDN 116
K + + L LFS +G I++ +++CD+
Sbjct: 100 KSIDNRALFYLFSAFGNILSCKVVCDD 126
Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 50/107 (46%), Gaps = 18/107 (16%)
Query: 25 ICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESI------ 78
+ V ++ +S G+GFV Y E A+KA+ L+G + K + V A+ E +
Sbjct: 213 VKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRR 272
Query: 79 ------------KGANLYVSGLPKHMSQQELESLFSPYGRIITSRIL 113
G +Y+ L + ++ ++L+ FS +G I ++++
Sbjct: 273 FERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVM 319
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 47/106 (44%), Gaps = 9/106 (8%)
Query: 26 CVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVS-YARPSSESIKG---- 80
C + S GY +V++ A +AI +NG+RL N+ + V + P + +
Sbjct: 120 CKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRD 179
Query: 81 ----ANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
N++V + + ++L+ LF YG + +++ D G
Sbjct: 180 RATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKG 225
>gi|194386842|dbj|BAG59787.1| unnamed protein product [Homo sapiens]
Length = 350
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 51/87 (58%), Gaps = 2/87 (2%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKG--ANLYVSGLP 89
T LGYG+VN+ P DAE A+NT+N + K ++ +++P K N+++ L
Sbjct: 23 TRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLD 82
Query: 90 KHMSQQELESLFSPYGRIITSRILCDN 116
K + + L LFS +G I++ +++CD+
Sbjct: 83 KSIDNRALFYLFSAFGNILSCKVVCDD 109
Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 48/101 (47%), Gaps = 18/101 (17%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESI------------ 78
++ +S G+GFV Y E A+KA+ L+G + K + V A+ E +
Sbjct: 202 ASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRL 261
Query: 79 ------KGANLYVSGLPKHMSQQELESLFSPYGRIITSRIL 113
G +Y+ L + ++ ++L+ FS +G I ++++
Sbjct: 262 KEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVM 302
Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 47/106 (44%), Gaps = 9/106 (8%)
Query: 26 CVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVS-YARPSSESIKG---- 80
C + S GY +V++ A +AI +NG+RL N+ + V + P + +
Sbjct: 103 CKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRD 162
Query: 81 ----ANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
N++V + + ++L+ LF YG + +++ D G
Sbjct: 163 RATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKG 208
>gi|14571727|emb|CAC42820.1| Poly(A)-binding protein cytoplasmic 5 [Mus musculus]
Length = 119
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 50/83 (60%), Gaps = 2/83 (2%)
Query: 36 LGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKG--ANLYVSGLPKHMS 93
LGYG+VN+ P DAE A+NT+N + K ++ +++P K N+++ L K +
Sbjct: 1 LGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKTID 60
Query: 94 QQELESLFSPYGRIITSRILCDN 116
+ L LFS +G I++ +++CD+
Sbjct: 61 NRALFYLFSAFGNILSCKVVCDD 83
>gi|160333518|ref|NP_001103836.1| poly A binding protein, cytoplasmic 5 [Rattus norvegicus]
gi|149055477|gb|EDM07061.1| rCG38154 [Rattus norvegicus]
Length = 382
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 51/87 (58%), Gaps = 2/87 (2%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKG--ANLYVSGLP 89
T LGYG+VN+ P DAE A+NT+N + K ++ +++P K N+++ L
Sbjct: 55 TRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDHLRKSGVGNIFIKNLD 114
Query: 90 KHMSQQELESLFSPYGRIITSRILCDN 116
K + + L LFS +G I++ +++CD+
Sbjct: 115 KSIDNRALFYLFSAFGNILSCKVVCDD 141
Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 51/109 (46%), Gaps = 18/109 (16%)
Query: 25 ICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESI------ 78
+ V +T +S G+GFV Y E A+KA+ L+G + K + V A+ E +
Sbjct: 228 VKVIRDATGKSKGFGFVRYETHEAAQKAVLELHGKSIDGKVLCVGRAQKKIERLAELRRR 287
Query: 79 ------------KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
G +Y+ L + ++ ++L+ FS +G I ++++ +
Sbjct: 288 FERLKLKDKTRPPGVPIYIKNLDETINDEKLKEEFSLFGSISRAKVMME 336
Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 47/106 (44%), Gaps = 9/106 (8%)
Query: 26 CVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVS-YARPSSESIKG---- 80
C + S GY +V++ A +AI +NG+RL N+ + V + P + +
Sbjct: 135 CKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRD 194
Query: 81 ----ANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
N++V + ++L+ LFS YG + +++ D G
Sbjct: 195 RATFTNVFVKNFGDDIDDEKLKKLFSEYGPTESVKVIRDATGKSKG 240
>gi|324511850|gb|ADY44928.1| Polyadenylate-binding protein 1, partial [Ascaris suum]
Length = 544
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/107 (28%), Positives = 60/107 (56%), Gaps = 2/107 (1%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYA--RPSSESIKGANLYVSGLP 89
T +SLGY +VN+ RPEDA++A+ T+N + + I++ ++ RPS+ + N++V L
Sbjct: 53 TRRSLGYAYVNFERPEDAKQALETMNFDIVHGRPIRIMWSQRRPSTSRVAAGNVFVKNLN 112
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLRR 136
++ + L + FS +G I++ ++ D + G + E R+
Sbjct: 113 GSVNSKALYNKFSVFGNIVSCKLAVDEQSKSKGYGFVQFETEEAARK 159
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/98 (29%), Positives = 50/98 (51%), Gaps = 8/98 (8%)
Query: 33 AQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGA--------NLY 84
++S GYGFV + E A KAI+ NG+ + K I V + SE + A N++
Sbjct: 141 SKSKGYGFVQFETEEAARKAIDGTNGVIFEGKRIYVGRFQSRSERSEQAKRTTNCFTNVF 200
Query: 85 VSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
V + +++L+ LF+ +G+I++ + D NG
Sbjct: 201 VKNFADILDKEKLQQLFAKFGKIVSCAVSVDGDGKPNG 238
Score = 42.0 bits (97), Expect = 0.090, Method: Composition-based stats.
Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 20/97 (20%)
Query: 37 GYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--------------------PSSE 76
G+GFV + P+DAEKA+ + L K+ +R ++
Sbjct: 238 GFGFVAFENPDDAEKAVKDMQDYHLPGSDRKLYVSRFQKKCERLAELDRKYQLEKNERAK 297
Query: 77 SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRIL 113
+GANLY+ L + L F YG +I+++++
Sbjct: 298 RYEGANLYLKNLDDAIDDDMLRRSFGEYGNVISAKVM 334
>gi|71896197|ref|NP_001026768.1| polyadenylate-binding protein 1 [Gallus gallus]
gi|53130422|emb|CAG31540.1| hypothetical protein RCJMB04_7l20 [Gallus gallus]
Length = 637
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K +++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 18/102 (17%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE--------------- 76
+ +S G+GFV++ R EDA+KA++ +NG L K I V A+ E
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKRVERQTELKRKFEQMKQD 286
Query: 77 ---SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+G NLYV L + + L FSP+G I +++++ +
Sbjct: 287 RITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME 328
Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 8/112 (7%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GYGFV++ E AE+AI +NG+ L ++ + V +R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ GA N+Y+ + M + L+ LF +G ++ +++ D G
Sbjct: 181 AELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKG 232
Score = 35.8 bits (81), Expect = 6.2, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + K + V+ A+ E
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 373
>gi|383417509|gb|AFH31968.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 456
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K +++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 18/102 (17%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE--------------- 76
+ +S G+GFV++ R EDA+KA++ +NG L K I V A+ E
Sbjct: 224 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQD 283
Query: 77 ---SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+G NLYV L + + L FSP+G I +++++ +
Sbjct: 284 RITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME 325
Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 30/112 (26%), Positives = 52/112 (46%), Gaps = 11/112 (9%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GYGFV++ E AE+AI +NG+ L ++ + V +R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ GA N+Y+ + M + L+ LF P ++ +++ D G
Sbjct: 181 AELGARAKEFTNVYIKNFGEDMDDERLKDLFGP---ALSVKVMTDESGKSKG 229
Score = 35.8 bits (81), Expect = 6.4, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + K + V+ A+ E
Sbjct: 323 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 370
>gi|383417507|gb|AFH31967.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|383417511|gb|AFH31969.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 459
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K +++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 18/102 (17%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE--------------- 76
+ +S G+GFV++ R EDA+KA++ +NG L K I V A+ E
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQD 286
Query: 77 ---SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+G NLYV L + + L FSP+G I +++++ +
Sbjct: 287 RITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME 328
Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 8/112 (7%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GYGFV++ E AE+AI +NG+ L ++ + V +R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ GA N+Y+ + M + L+ LF +G ++ +++ D G
Sbjct: 181 AELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKG 232
Score = 35.8 bits (81), Expect = 6.4, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + K + V+ A+ E
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 373
>gi|328852276|gb|EGG01423.1| hypothetical protein MELLADRAFT_39080 [Melampsora larici-populina
98AG31]
Length = 701
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 40/115 (34%), Positives = 60/115 (52%), Gaps = 13/115 (11%)
Query: 19 GFSDAEIC-VFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE- 76
F D C V + ST S GYGFV+Y E AE AI +NG++L +K + V P E
Sbjct: 167 AFGDILSCKVAMDSTGASKGYGFVHYVTAESAEAAIKGVNGMQLNDKVVFVGIHVPRRER 226
Query: 77 -----SIKG--ANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKY 124
++ NLY+ LP ++ +EL +FS YG + ++ + D E+GK+
Sbjct: 227 QAKIDEVRAHFTNLYIKNLPTEVTTEELNEMFSKYGPVTSAAVQAD----ESGKH 277
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 50/93 (53%), Gaps = 2/93 (2%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VNY DAE+A+ LN ++NK ++ +++ PS N+++ L
Sbjct: 94 TRRSLGYAYVNYLNAADAERALEQLNYSLIKNKACRIMWSQRDPSLRKTGQGNIFIKNLD 153
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ + + L F+ +G I++ ++ D+ G
Sbjct: 154 ETIDNKALHDTFAAFGDILSCKVAMDSTGASKG 186
Score = 45.1 bits (105), Expect = 0.010, Method: Composition-based stats.
Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 18/104 (17%)
Query: 37 GYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE------------------SI 78
G+GFVNY E A KA+ L+ + + V+ A+ E
Sbjct: 279 GFGFVNYENHESASKAVEALHDKDYKGNILYVARAQKRVERDAELRRAHEQQKYETTLKY 338
Query: 79 KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+G NLY+ L ++L++ F P+G I + +++ D+ G
Sbjct: 339 QGVNLYIKNLDDEYDDEKLQAEFLPFGTITSCKVMKDDKGVSRG 382
Score = 35.8 bits (81), Expect = 6.4, Method: Composition-based stats.
Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 22/99 (22%)
Query: 35 SLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQ 94
S G+GFV + P++A KA+ +NG L +K + VS A+ K + +
Sbjct: 380 SRGFGFVCFSAPDEATKAVAEMNGKMLGSKPLYVSLAQ----------------RKDVRK 423
Query: 95 QELESLFSPYGRIITSRILCDNL------ATENGKYYSG 127
Q+LE+ S ++ + +I + A N YY G
Sbjct: 424 QQLEAQMSQRAQMRSQQIAAAGIPGAPYGAPPNQMYYGG 462
>gi|41152034|ref|NP_958453.1| polyadenylate-binding protein 4 [Danio rerio]
gi|31419252|gb|AAH53126.1| Poly(A) binding protein, cytoplasmic 4 (inducible form) [Danio
rerio]
Length = 637
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K I++ +++ PS N+++ L
Sbjct: 49 TRRSLGYAYVNFQQPADAERALDTMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLD 108
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 109 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 137
Score = 58.9 bits (141), Expect = 6e-07, Method: Composition-based stats.
Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 18/102 (17%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE--------------- 76
T +S G+GFV+Y + EDA KA+ +NG L KT+ V A+ E
Sbjct: 228 TGKSRGFGFVSYEKHEDANKAVEEMNGTELNGKTVFVGRAQKKMERQAELKRKFEQLKQE 287
Query: 77 ---SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+G NLY+ L + ++L FSP+G I +++++ +
Sbjct: 288 RISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE 329
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 8/112 (7%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GY FV++ + A++AI +NG+ L ++ + V +R E
Sbjct: 122 AFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKERE 181
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ GA N+Y+ M Q L+ LF YG+ ++ +++ D G
Sbjct: 182 AEMGAKAKEFTNVYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDPTGKSRG 233
Score = 35.8 bits (81), Expect = 5.2, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + +K + V+ A+ E
Sbjct: 327 MLEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE 374
>gi|251765112|sp|B4LFQ9.2|SHEP_DROVI RecName: Full=Protein alan shepard
Length = 595
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 31/103 (30%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ +P AE A+ L +Q + K P+ NLY++ LP
Sbjct: 279 TTNKCKGYGFVDFEQPAYAEGAVKGLQAKGVQAQMAKQQEQDPT-------NLYIANLPP 331
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
H + +LE++ + YG+++++RIL D G ++ + RE+
Sbjct: 332 HFKETDLEAMLAKYGQVVSTRILRDQQMNSKGVGFARMESREK 374
>gi|257215880|emb|CAX83092.1| ELAV-like protein 1 (Hu-antigen R) [Schistosoma japonicum]
Length = 301
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 48/86 (55%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
++ S G+GF Y A KAI NG R+ +K +KVS A+ + +NLYV P
Sbjct: 43 NSGSSFGFGFCEYEDSCSAHKAITRFNGYRIADKVLKVSLAKLQGRLCQSSNLYVKNFPP 102
Query: 91 HMSQQELESLFSPYGRIITSRILCDN 116
+++ +L + F +GR+I RIL D+
Sbjct: 103 TLTEDDLAAEFGQFGRVIQCRILRDH 128
>gi|324501709|gb|ADY40758.1| Polyadenylate-binding protein 1 [Ascaris suum]
Length = 595
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 31/107 (28%), Positives = 60/107 (56%), Gaps = 2/107 (1%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYA--RPSSESIKGANLYVSGLP 89
T +SLGY +VN+ RPEDA++A+ T+N + + I++ ++ RPS+ + N++V L
Sbjct: 53 TRRSLGYAYVNFERPEDAKQALETMNFDIVHGRPIRIMWSQRRPSTSRVAAGNVFVKNLN 112
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLRR 136
++ + L + FS +G I++ ++ D + G + E R+
Sbjct: 113 GSVNSKALYNKFSVFGNIVSCKLAVDEQSKSKGYGFVQFETEEAARK 159
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/98 (29%), Positives = 50/98 (51%), Gaps = 8/98 (8%)
Query: 33 AQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGA--------NLY 84
++S GYGFV + E A KAI+ NG+ + K I V + SE + A N++
Sbjct: 141 SKSKGYGFVQFETEEAARKAIDGTNGVIFEGKRIYVGRFQSRSERSEQAKRTTNCFTNVF 200
Query: 85 VSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
V + +++L+ LF+ +G+I++ + D NG
Sbjct: 201 VKNFADILDKEKLQQLFAKFGKIVSCAVSVDGDGKPNG 238
Score = 41.6 bits (96), Expect = 0.096, Method: Composition-based stats.
Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 20/97 (20%)
Query: 37 GYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--------------------PSSE 76
G+GFV + P+DAEKA+ + L K+ +R ++
Sbjct: 238 GFGFVAFENPDDAEKAVKDMQDYHLPGSDRKLYVSRFQKKCERLAELDRKYQLEKNERAK 297
Query: 77 SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRIL 113
+GANLY+ L + L F YG +I+++++
Sbjct: 298 RYEGANLYLKNLDDAIDDDMLRRSFGEYGNVISAKVM 334
>gi|448519634|ref|XP_003868121.1| poly(A)-binding protein [Candida orthopsilosis Co 90-125]
gi|380352460|emb|CCG22686.1| poly(A)-binding protein [Candida orthopsilosis]
Length = 638
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 54/89 (60%), Gaps = 2/89 (2%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
+ +SLGY +VNYH+ ED EKAI+ LN ++N+ ++ +++ PS+ N+++ L
Sbjct: 98 SKKSLGYAYVNYHKFEDGEKAIDELNYSLIENRPCRIMWSQRDPSARRSGDGNIFIKNLH 157
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLA 118
+ + L FS +GRI++ ++ D+L
Sbjct: 158 PAIDNKALHDTFSAFGRILSCKVATDDLG 186
Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 18/108 (16%)
Query: 33 AQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYA---RPSSESIK---------- 79
+S G+GFVNY + A +A+ LN + + I V A R +E +K
Sbjct: 279 GKSKGFGFVNYEEHKSAVEAVEALNDKEINGQKIYVGRAQKKRERTEELKKQYEAIRLEK 338
Query: 80 -----GANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
G NL+V L + ++LE F P+G I +++++ D+ G
Sbjct: 339 LSKYQGVNLFVKNLDDQIDSEKLEEEFKPFGTITSAKVMVDDAGKSRG 386
Score = 40.4 bits (93), Expect = 0.22, Method: Composition-based stats.
Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 8/85 (9%)
Query: 33 AQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYA-----RPSS-ESIKG--ANLY 84
QS +GFV+Y E AE AI +NG+ L ++ + V R S E +K N+Y
Sbjct: 186 GQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVYVGKHVSKKDRESKFEEMKANYTNIY 245
Query: 85 VSGLPKHMSQQELESLFSPYGRIIT 109
V + S++E E LF+PYG+I +
Sbjct: 246 VKNIDLEFSEKEFEDLFAPYGKITS 270
>gi|356521524|ref|XP_003529405.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 651
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 54/95 (56%), Gaps = 2/95 (2%)
Query: 30 ISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSG 87
+++ +SLGYG+VN+ P+DA +A++ LN L N+ I++ Y+ PS N+++
Sbjct: 66 LTSRRSLGYGYVNFSNPQDAARALDVLNFTPLNNRPIRIMYSHRDPSIRKSGQGNIFIKN 125
Query: 88 LPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
L + + + L FS +G I++ ++ D+ G
Sbjct: 126 LDRAIDHKALHDTFSTFGNILSCKVATDSSGQSKG 160
Score = 55.8 bits (133), Expect = 5e-06, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 53/122 (43%), Gaps = 18/122 (14%)
Query: 33 AQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE---------------- 76
+S +GFVN+ +DA +A+ LNG +K V A+ SE
Sbjct: 247 GKSKCFGFVNFENADDAARAVEALNGKNFDDKEWYVGKAQKKSERENELKQRFEQSMKEA 306
Query: 77 --SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERL 134
+GANLYV L + ++L+ LFSP+G I + +++ D G + E
Sbjct: 307 ADKYQGANLYVKNLDDSIGDEKLKELFSPFGTITSCKVMRDPNGLSRGSGFVAFSTPEEA 366
Query: 135 RR 136
R
Sbjct: 367 SR 368
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 51/91 (56%), Gaps = 6/91 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVS-YAR-----PSSESIKGANLY 84
S+ QS GYGFV + E A+KAI LNG+ L +K + V + R +++ K N++
Sbjct: 154 SSGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGPFLRKQERESAADKAKFNNVF 213
Query: 85 VSGLPKHMSQQELESLFSPYGRIITSRILCD 115
V L + + EL++ F +G I ++ ++ D
Sbjct: 214 VKNLSESTTDDELKNTFGEFGTITSAVVMRD 244
>gi|359386152|gb|AEV43365.1| poly A-binding protein 2 [Citrus sinensis]
Length = 652
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 31/95 (32%), Positives = 53/95 (55%), Gaps = 2/95 (2%)
Query: 30 ISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKV--SYARPSSESIKGANLYVSG 87
+ST +SLGYG+VNY+ +A +A++ LN L K I++ SY P+ N+++
Sbjct: 75 LSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKN 134
Query: 88 LPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
L K + + L FS +G I++ ++ D+L G
Sbjct: 135 LDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRG 169
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/103 (27%), Positives = 51/103 (49%), Gaps = 18/103 (17%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYA------------------R 72
+ +S +GFVN+ P+DA +++ LNG + +K V A +
Sbjct: 254 ADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLK 313
Query: 73 PSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+++ +G NLYV L +S +L+ LFS +G I + +++ D
Sbjct: 314 ETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD 356
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 49/91 (53%), Gaps = 6/91 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKV------SYARPSSESIKGANLY 84
S QS GYGFV + E A+ AI+ LNG+ L +K + V +++ + N+Y
Sbjct: 163 SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVY 222
Query: 85 VSGLPKHMSQQELESLFSPYGRIITSRILCD 115
V L + ++ +L+ +F +G I ++ ++ D
Sbjct: 223 VKNLSETTTEDDLKKIFGEFGIITSTAVMRD 253
>gi|19347816|gb|AAL86321.1| putative poly(A)-binding protein [Arabidopsis thaliana]
Length = 613
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 33/100 (33%), Positives = 55/100 (55%), Gaps = 3/100 (3%)
Query: 25 ICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGAN 82
+C L+ T +SLGYG+VN+ P+DA +AI LN + L K I+V Y+ PS N
Sbjct: 51 VCRDLV-TRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSHRDPSVRRSGAGN 109
Query: 83 LYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+++ L + + + L FS +G I++ ++ D+ G
Sbjct: 110 IFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKG 149
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 32/108 (29%), Positives = 55/108 (50%), Gaps = 18/108 (16%)
Query: 33 AQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE---------------- 76
+S G+GFVN+ +DA +A+ +LNG + +K V A+ SE
Sbjct: 236 GKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEA 295
Query: 77 --SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ +NLYV L +S ++L+ +FSP+G + +S+++ D T G
Sbjct: 296 ADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKG 343
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 6/98 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVS-YAR-----PSSESIKGANLY 84
S+ QS GYGFV Y E A+KAI LNG+ L +K + V + R ++ K N+Y
Sbjct: 143 SSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVY 202
Query: 85 VSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
V L + + +L++ F YG+I ++ ++ D G
Sbjct: 203 VKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKG 240
>gi|194750273|ref|XP_001957552.1| GF10470 [Drosophila ananassae]
gi|190624834|gb|EDV40358.1| GF10470 [Drosophila ananassae]
Length = 573
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 33/100 (33%), Positives = 57/100 (57%), Gaps = 4/100 (4%)
Query: 38 YGFVNYHRPEDAEKAINTLNGLRLQNKTIKVS---YARPSSESIKG-ANLYVSGLPKHMS 93
YGFV++ +P AE A+ L G +Q + KV RP+ + + NLY++ LP H
Sbjct: 253 YGFVDFEQPAFAECAVKGLQGKGVQAQMAKVGIWVLHRPAIQQEQDPTNLYIANLPPHYK 312
Query: 94 QQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
+ +LE++ S YG+++++RIL D G ++ + RE+
Sbjct: 313 ETDLEAMLSKYGQVVSTRILRDQQMNSKGVGFARMESREK 352
>gi|240256156|ref|NP_195137.5| Polyadenylate-binding protein 2 [Arabidopsis thaliana]
gi|1171978|sp|P42731.1|PABP2_ARATH RecName: Full=Polyadenylate-binding protein 2; Short=PABP-2;
Short=Poly(A)-binding protein 2
gi|304109|gb|AAA61780.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|2911051|emb|CAA17561.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|7270360|emb|CAB80128.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|26983870|gb|AAN86187.1| putative polyadenylate-binding protein 2 (PABP2) [Arabidopsis
thaliana]
gi|332660925|gb|AEE86325.1| Polyadenylate-binding protein 2 [Arabidopsis thaliana]
Length = 629
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 33/100 (33%), Positives = 55/100 (55%), Gaps = 3/100 (3%)
Query: 25 ICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGAN 82
+C L+ T +SLGYG+VN+ P+DA +AI LN + L K I+V Y+ PS N
Sbjct: 67 VCRDLV-TRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSHRDPSVRRSGAGN 125
Query: 83 LYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+++ L + + + L FS +G I++ ++ D+ G
Sbjct: 126 IFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKG 165
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 32/108 (29%), Positives = 55/108 (50%), Gaps = 18/108 (16%)
Query: 33 AQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE---------------- 76
+S G+GFVN+ +DA +A+ +LNG + +K V A+ SE
Sbjct: 252 GKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEA 311
Query: 77 --SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ +NLYV L +S ++L+ +FSP+G + +S+++ D T G
Sbjct: 312 ADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKG 359
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 6/98 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVS-YAR-----PSSESIKGANLY 84
S+ QS GYGFV Y E A+KAI LNG+ L +K + V + R ++ K N+Y
Sbjct: 159 SSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVY 218
Query: 85 VSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
V L + + +L++ F YG+I ++ ++ D G
Sbjct: 219 VKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKG 256
>gi|348570452|ref|XP_003471011.1| PREDICTED: polyadenylate-binding protein 5-like [Cavia porcellus]
Length = 382
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 51/87 (58%), Gaps = 2/87 (2%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKG--ANLYVSGLP 89
T LGYG+VN+ P DAE A+NT+N + K ++ +++P K N+++ L
Sbjct: 55 THSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLD 114
Query: 90 KHMSQQELESLFSPYGRIITSRILCDN 116
K + + L LFS +G I++ +++CD+
Sbjct: 115 KSIDNRSLFYLFSAFGNILSCKVVCDD 141
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 50/106 (47%), Gaps = 9/106 (8%)
Query: 26 CVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVS-YARPSSESIKG---- 80
C + S GY +V++ A +AI +NG++L N+ + V + P + +
Sbjct: 135 CKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVQLNNRQVYVGRFKFPEERAAEVRTRD 194
Query: 81 ----ANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
N++V L M ++L++LFS YG+ + +++ D G
Sbjct: 195 KATFTNVFVKNLGDDMDDEKLKTLFSEYGQTESVKLVRDASGKSKG 240
Score = 38.9 bits (89), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 49/103 (47%), Gaps = 18/103 (17%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESI------------ 78
++ +S G+GFV Y + A+KA+ L+G + K + V A+ E +
Sbjct: 234 ASGKSKGFGFVRYETHDAAQKAVLDLHGKSVDGKVLYVGRAQKKIERLAELRRRFERLRL 293
Query: 79 ------KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
G +Y+ L + + +++L+ FS +G I ++++ +
Sbjct: 294 KEKSRPPGVPIYIKNLDETIDEEKLKEEFSAFGSISRAKVMME 336
>gi|354466116|ref|XP_003495521.1| PREDICTED: polyadenylate-binding protein 4-like [Cricetulus
griseus]
gi|344243583|gb|EGV99686.1| Polyadenylate-binding protein 4-like [Cricetulus griseus]
Length = 370
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 61/93 (65%), Gaps = 3/93 (3%)
Query: 25 ICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKG--AN 82
IC L+S +SLGY +VN+ + +DA+KA++T+N +Q K+I++ +++ + K N
Sbjct: 41 ICRDLVSR-RSLGYAYVNFLQLDDAQKALDTMNFDLIQGKSIRLMWSQRDAYLRKSGIGN 99
Query: 83 LYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+++ L K + + L FSP+G+I++S+++ D
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSPFGKILSSKVMSD 132
Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 54/97 (55%), Gaps = 12/97 (12%)
Query: 35 SLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--------ARPSSESIKGANLYVS 86
S GYGFV+Y A++AI +NG L++ T+ V A S++ + N+Y+
Sbjct: 136 SRGYGFVHYQDQSAADRAIEEMNGKLLRDCTVFVDRFKSRKDREAELRSKTSEFTNVYIK 195
Query: 87 GLPKHMSQQELESLFSPYGRIITSRILCDNLATENGK 123
L +M + L+++FS YG+ ++ +++ D +NGK
Sbjct: 196 NLGDNMDDEGLKNIFSKYGQTLSVKVMKD----DNGK 228
Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 46/107 (42%), Gaps = 18/107 (16%)
Query: 25 ICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE-------- 76
+ V +S G+GFV+++ E A A+ +NG + +TI V A+ E
Sbjct: 219 VKVMKDDNGKSKGFGFVSFYNHEAARNAVEEMNGQDINGQTIFVGRAQKKVERQAELKEK 278
Query: 77 ----------SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRIL 113
+ + A LY+ L + + + L FS +G I +++
Sbjct: 279 FEQMKKERIRARQAAKLYIKNLDETIDDETLRREFSSFGSICRVKVM 325
>gi|380503877|ref|NP_001244114.1| polyadenylate-binding protein 5 [Equus caballus]
Length = 382
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 51/87 (58%), Gaps = 2/87 (2%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKG--ANLYVSGLP 89
T LGYG+VN+ P DAE A+NT+N + K ++ +++P K N+++ L
Sbjct: 55 TRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLD 114
Query: 90 KHMSQQELESLFSPYGRIITSRILCDN 116
K + + L LFS +G I++ +++CD+
Sbjct: 115 KSIDNRALFYLFSAFGNILSCKVVCDD 141
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 47/106 (44%), Gaps = 9/106 (8%)
Query: 26 CVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVS-YARPSSESIKG---- 80
C + S GY +V++ A +AI +NG+RL N+ + V + P + +
Sbjct: 135 CKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRD 194
Query: 81 ----ANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
N++V M ++L+ +FS YG + +++ D G
Sbjct: 195 RATFTNVFVKNFGDDMDDEKLKEIFSEYGSTESVKVIRDASGKSKG 240
Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 51/113 (45%), Gaps = 18/113 (15%)
Query: 21 SDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESI-- 78
S + V ++ +S G+GFV Y E A+KA+ L+G + K + V A+ E +
Sbjct: 224 STESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAE 283
Query: 79 ----------------KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
G +Y+ L + + ++L+ FS +G I ++++ +
Sbjct: 284 LRRRFERLRLKEKSRAPGVPIYIKNLDETIDDEKLKEEFSSFGSISRAKVMVE 336
>gi|29336045|ref|NP_444344.1| polyadenylate-binding protein 5 [Mus musculus]
gi|26341316|dbj|BAC34320.1| unnamed protein product [Mus musculus]
gi|76827669|gb|AAI07363.1| Poly(A) binding protein, cytoplasmic 5 [Mus musculus]
gi|76828194|gb|AAI07364.1| Poly(A) binding protein, cytoplasmic 5 [Mus musculus]
gi|148701502|gb|EDL33449.1| poly A binding protein, cytoplasmic 5 [Mus musculus]
Length = 381
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 51/87 (58%), Gaps = 2/87 (2%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKG--ANLYVSGLP 89
T LGYG+VN+ P DAE A+NT+N + K ++ +++P K N+++ L
Sbjct: 54 TRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLD 113
Query: 90 KHMSQQELESLFSPYGRIITSRILCDN 116
K + + L LFS +G I++ +++CD+
Sbjct: 114 KTIDNRALFYLFSAFGNILSCKVVCDD 140
Score = 42.7 bits (99), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 61/127 (48%), Gaps = 23/127 (18%)
Query: 7 LNKLFTYEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTI 66
LNKLF+ G +++ + V +T +S G+GFV Y E A+KA+ L+G + K +
Sbjct: 214 LNKLFS----EYGPTES-VKVIRDATGKSKGFGFVRYETHEAAQKAVLELHGKSIDGKVL 268
Query: 67 KVSYARPSSESI------------------KGANLYVSGLPKHMSQQELESLFSPYGRII 108
V A+ E + G +Y+ L + ++ ++L+ FS +G I
Sbjct: 269 CVGRAQKKIERLAELRRRFERLKLKEKNRPSGVPIYIKNLDETINDEKLKEEFSSFGSIS 328
Query: 109 TSRILCD 115
++++ +
Sbjct: 329 RAKVMME 335
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 55/128 (42%), Gaps = 11/128 (8%)
Query: 4 QTLLNKLFTYEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQN 63
+T+ N+ Y + F + C + S GY +V++ A +AI +NG+RL N
Sbjct: 114 KTIDNRALFY--LFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNN 171
Query: 64 KTIKVS-YARP--------SSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILC 114
+ + V + P + E N++V + ++L LFS YG + +++
Sbjct: 172 RQVYVGRFKFPEERAAEVRTRERATFTNVFVKNFGDDIDDEKLNKLFSEYGPTESVKVIR 231
Query: 115 DNLATENG 122
D G
Sbjct: 232 DATGKSKG 239
>gi|195376319|ref|XP_002046944.1| GJ12205 [Drosophila virilis]
gi|194154102|gb|EDW69286.1| GJ12205 [Drosophila virilis]
Length = 868
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 31/103 (30%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ +P AE A+ L +Q + K P+ NLY++ LP
Sbjct: 552 TTNKCKGYGFVDFEQPAYAEGAVKGLQAKGVQAQMAKQQEQDPT-------NLYIANLPP 604
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
H + +LE++ + YG+++++RIL D G ++ + RE+
Sbjct: 605 HFKETDLEAMLAKYGQVVSTRILRDQQMNSKGVGFARMESREK 647
>gi|195014142|ref|XP_001983966.1| GH15273 [Drosophila grimshawi]
gi|251765067|sp|B4IX08.1|SHEP_DROGR RecName: Full=Protein alan shepard
gi|193897448|gb|EDV96314.1| GH15273 [Drosophila grimshawi]
Length = 609
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 31/103 (30%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ +P AE A+ L +Q + K P+ NLY++ LP
Sbjct: 293 TTNKCKGYGFVDFEQPAYAEGAVKGLQAKGVQAQMAKQQEQDPT-------NLYIANLPP 345
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
H + +LE++ + YG+++++RIL D G ++ + RE+
Sbjct: 346 HFKETDLEAMLAKYGQVVSTRILRDQQMNSKGVGFARMESREK 388
>gi|74008013|ref|XP_549122.2| PREDICTED: polyadenylate-binding protein 5 [Canis lupus familiaris]
Length = 382
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 51/87 (58%), Gaps = 2/87 (2%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKG--ANLYVSGLP 89
T LGYG+VN+ P DAE A+NT+N + K ++ +++P K N+++ L
Sbjct: 55 TRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLD 114
Query: 90 KHMSQQELESLFSPYGRIITSRILCDN 116
K + + L LFS +G I++ +++CD+
Sbjct: 115 KSIDNRALFYLFSAFGNILSCKVVCDD 141
Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 47/106 (44%), Gaps = 9/106 (8%)
Query: 26 CVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVS-YARPSSESIKG---- 80
C + S GY +V++ A +AI +NG+RL N+ + V + P + +
Sbjct: 135 CKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRD 194
Query: 81 ----ANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
N++V M ++L+ +FS YG + +++ D G
Sbjct: 195 RATFTNVFVKNFGNDMDDEKLKEIFSGYGPTESVKVIRDASGKSKG 240
Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 50/109 (45%), Gaps = 18/109 (16%)
Query: 25 ICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESI------ 78
+ V ++ +S G+GFV Y E A+KA+ L+G + K + V A+ E +
Sbjct: 228 VKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSINGKVLYVGRAQKKIERLAELRRR 287
Query: 79 ------------KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
G +Y+ L + + ++L+ FS +G I ++++ +
Sbjct: 288 FERLRLKEKSRPPGVPIYIKNLDETIDDEKLKEEFSSFGSISRAKVMVE 336
>gi|113461967|ref|NP_001038193.1| polyadenylate-binding protein 5 [Macaca mulatta]
gi|402910717|ref|XP_003918003.1| PREDICTED: polyadenylate-binding protein 5 [Papio anubis]
gi|50400917|sp|Q7JGR2.1|PABP5_MACMU RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|14571725|emb|CAC42819.1| Poly(A)-binding protein cytoplasmic 5 [Macaca mulatta]
gi|14571737|emb|CAC42821.1| Poly(A)-binding protein cytoplasmic 5 [Miopithecus talapoin]
gi|90082100|dbj|BAE90331.1| unnamed protein product [Macaca fascicularis]
gi|355704969|gb|EHH30894.1| Polyadenylate-binding protein 5 [Macaca mulatta]
gi|355757521|gb|EHH61046.1| Polyadenylate-binding protein 5 [Macaca fascicularis]
Length = 382
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 51/87 (58%), Gaps = 2/87 (2%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKG--ANLYVSGLP 89
T LGYG+VN+ P DAE A+NT+N + K ++ +++P K N+++ L
Sbjct: 55 TRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLD 114
Query: 90 KHMSQQELESLFSPYGRIITSRILCDN 116
K + + L LFS +G I++ +++CD+
Sbjct: 115 KSIDNRALFYLFSAFGNILSCKVVCDD 141
Score = 39.7 bits (91), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 50/107 (46%), Gaps = 18/107 (16%)
Query: 25 ICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESI------ 78
+ V ++ +S G+GFV Y E A+KA+ L+G + K + V A+ E +
Sbjct: 228 VKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRR 287
Query: 79 ------------KGANLYVSGLPKHMSQQELESLFSPYGRIITSRIL 113
G +Y+ L + ++ ++L+ FS +G I ++++
Sbjct: 288 FERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVM 334
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 47/106 (44%), Gaps = 9/106 (8%)
Query: 26 CVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVS-YARPSSESIKG---- 80
C + S GY +V++ A +AI +NG+RL N+ + V + P + +
Sbjct: 135 CKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRD 194
Query: 81 ----ANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
N++V + + ++L+ LF YG + +++ D G
Sbjct: 195 RATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKG 240
>gi|410988961|ref|XP_004000741.1| PREDICTED: polyadenylate-binding protein 5 [Felis catus]
Length = 382
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 51/87 (58%), Gaps = 2/87 (2%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKG--ANLYVSGLP 89
T LGYG+VN+ P DAE A+NT+N + K ++ +++P K N+++ L
Sbjct: 55 TRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLD 114
Query: 90 KHMSQQELESLFSPYGRIITSRILCDN 116
K + + L LFS +G I++ +++CD+
Sbjct: 115 KSIDNRALFYLFSAFGNILSCKVVCDD 141
Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 46/106 (43%), Gaps = 9/106 (8%)
Query: 26 CVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTI-----KVSYARPSSESIKG 80
C + S GY +V++ A +AI +NG+RL N+ + K R + K
Sbjct: 135 CKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTKD 194
Query: 81 ----ANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
N++V M ++L+ +FS YG + +++ D G
Sbjct: 195 RATFTNVFVKNFGDDMDDEKLKEIFSGYGPTESVKVIRDASGKSKG 240
Score = 40.0 bits (92), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 50/109 (45%), Gaps = 18/109 (16%)
Query: 25 ICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESI------ 78
+ V ++ +S G+GFV Y E A+KA+ L+G + K + V A+ E +
Sbjct: 228 VKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSINGKVLYVGRAQKKIERLAELRRR 287
Query: 79 ------------KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
G +Y+ L + + ++L+ FS +G I ++++ +
Sbjct: 288 FERLRLKEKSRPPGVPIYIKNLDETIDDEKLKEEFSSFGSISRAKVMVE 336
>gi|444732647|gb|ELW72929.1| Polyadenylate-binding protein 5 [Tupaia chinensis]
Length = 382
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 51/87 (58%), Gaps = 2/87 (2%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKG--ANLYVSGLP 89
T LGYG+VN+ P DAE A+NT+N + K ++ +++P K N+++ L
Sbjct: 55 TRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLD 114
Query: 90 KHMSQQELESLFSPYGRIITSRILCDN 116
K + + L LFS +G I++ +++CD+
Sbjct: 115 KSIDNRALFYLFSAFGNILSCKVVCDD 141
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 9/99 (9%)
Query: 26 CVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVS-YARPSSESIKG---- 80
C + S GY +V++ A +AI +NG+RL N+ + V + P + +
Sbjct: 135 CKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRD 194
Query: 81 ----ANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
N++V M ++L+ LFS YG + +++ D
Sbjct: 195 RATFTNVFVKNFGDDMDDEKLKELFSEYGPTESVKVIRD 233
Score = 38.9 bits (89), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 49/109 (44%), Gaps = 18/109 (16%)
Query: 25 ICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESI------ 78
+ V + +S G+GFV Y E A+KA+ L+G + K + V A+ E +
Sbjct: 228 VKVIRDAGGKSKGFGFVRYETHEAAQKAVLDLHGKSMDGKVLYVGRAQKKIERLAELRRR 287
Query: 79 ------------KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
G +Y+ L + + ++L+ FS +G I ++++ +
Sbjct: 288 FERLRLKEKSRPPGVPIYIKNLDETIDDEKLKEEFSSFGSISRAKVMME 336
>gi|426391822|ref|XP_004062265.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Gorilla
gorilla gorilla]
gi|164651982|gb|ABY64766.1| ePAB [Homo sapiens]
Length = 330
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 58/99 (58%), Gaps = 8/99 (8%)
Query: 26 CVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSESIKGA-- 81
C S G+GFV++ E A++AINT+NG+ L ++ + V + +R E+ GA
Sbjct: 128 CKVACDEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARA 187
Query: 82 ----NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
N+YV LP + +Q L+ LFS +G++++ +++ DN
Sbjct: 188 LEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDN 226
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 30 ISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSG 87
++T +SLGY ++N+ +P DAE+A++T+N L+ + I++ +++ P N+++
Sbjct: 46 VATRRSLGYAYINFQQPADAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKN 105
Query: 88 LPKHMSQQELESLFSPYGRIITSRILCD 115
L + + L FS +G I++ ++ CD
Sbjct: 106 LEDSIDNKALYDTFSTFGNILSCKVACD 133
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 18/105 (17%)
Query: 25 ICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE-------- 76
+ V ++ S +GFVN+ + E+A+KA+ +NG + + + A+ E
Sbjct: 220 VKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRR 279
Query: 77 ----------SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSR 111
+G NLYV L + +L FSPYG I +++
Sbjct: 280 FEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAK 324
>gi|74179640|dbj|BAE22471.1| unnamed protein product [Mus musculus]
Length = 403
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 58/103 (56%), Gaps = 7/103 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA++ L +Q + K P+ NLY+S LP
Sbjct: 98 ATNKCKGYGFVDFDSPAAAQKAVSALKANGVQAQMAKQQEQDPT-------NLYISNLPL 150
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QEL+++ P+G++I++R+L D+ G ++ + E+
Sbjct: 151 SMDEQELKNMLKPFGQVISTRVLRDSSGASRGVGFARMESTEK 193
Score = 39.3 bits (90), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYY 125
+ + NLY+ GLP + + Q+L L PYG+I++++ + D AT K Y
Sbjct: 57 DQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDK-ATNKCKGY 105
>gi|14571650|emb|CAC42811.1| Poly(A)-binding protein cytoplasmic 5 [Cricetulus griseus]
Length = 177
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 54/95 (56%), Gaps = 2/95 (2%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKG--ANLYVSGLP 89
T LGYG+VN+ P DAE A+NT+N + K ++ +++P K N+++ L
Sbjct: 55 THSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKHLD 114
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENGKY 124
K + + L LFS +G I++ +++CD+ ++ Y
Sbjct: 115 KSIDNRTLFYLFSAFGNILSCKVVCDDNGSKGYAY 149
>gi|18201888|ref|NP_543022.1| polyadenylate-binding protein 5 [Homo sapiens]
gi|115392093|ref|NP_001065269.1| polyadenylate-binding protein 5 [Pan troglodytes]
gi|332239776|ref|XP_003269075.1| PREDICTED: polyadenylate-binding protein 5 [Nomascus leucogenys]
gi|426396593|ref|XP_004064521.1| PREDICTED: polyadenylate-binding protein 5-like [Gorilla gorilla
gorilla]
gi|28201851|sp|Q96DU9.1|PABP5_HUMAN RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|38502886|sp|P60047.1|PABP5_GORGO RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|38502887|sp|P60048.1|PABP5_HYLLA RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|38502888|sp|P60049.1|PABP5_PANTR RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|38502889|sp|P60050.1|PABP5_PONPY RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|14571705|emb|CAC42817.1| Poly(A)-binding protein cytoplasmic 5 [Gorilla gorilla]
gi|14571711|emb|CAC42818.1| Poly(A)-binding protein cytoplasmic 5 [Hylobates lar]
gi|14571756|emb|CAC42822.1| Poly(A)-binding protein cytoplasmic 5 [Pongo pygmaeus]
gi|14571764|emb|CAC42823.1| poly(A)-binding protein cytoplasmic 5 [Pan troglodytes]
gi|14572616|emb|CAC42826.1| Poly(A)-binding protein cytoplasmic 5 [Homo sapiens]
gi|38649270|gb|AAH63113.1| Poly(A) binding protein, cytoplasmic 5 [Homo sapiens]
gi|119623181|gb|EAX02776.1| poly(A) binding protein, cytoplasmic 5 [Homo sapiens]
gi|158261233|dbj|BAF82794.1| unnamed protein product [Homo sapiens]
gi|208968659|dbj|BAG74168.1| poly(A) binding protein, cytoplasmic 5 [synthetic construct]
gi|312151110|gb|ADQ32067.1| poly(A) binding protein, cytoplasmic 5 [synthetic construct]
gi|410208314|gb|JAA01376.1| poly(A) binding protein, cytoplasmic 5 [Pan troglodytes]
gi|410305648|gb|JAA31424.1| poly(A) binding protein, cytoplasmic 5 [Pan troglodytes]
Length = 382
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 51/87 (58%), Gaps = 2/87 (2%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKG--ANLYVSGLP 89
T LGYG+VN+ P DAE A+NT+N + K ++ +++P K N+++ L
Sbjct: 55 TRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLD 114
Query: 90 KHMSQQELESLFSPYGRIITSRILCDN 116
K + + L LFS +G I++ +++CD+
Sbjct: 115 KSIDNRALFYLFSAFGNILSCKVVCDD 141
Score = 39.7 bits (91), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 50/107 (46%), Gaps = 18/107 (16%)
Query: 25 ICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESI------ 78
+ V ++ +S G+GFV Y E A+KA+ L+G + K + V A+ E +
Sbjct: 228 VKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRR 287
Query: 79 ------------KGANLYVSGLPKHMSQQELESLFSPYGRIITSRIL 113
G +Y+ L + ++ ++L+ FS +G I ++++
Sbjct: 288 FERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVM 334
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 47/106 (44%), Gaps = 9/106 (8%)
Query: 26 CVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVS-YARPSSESIKG---- 80
C + S GY +V++ A +AI +NG+RL N+ + V + P + +
Sbjct: 135 CKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRD 194
Query: 81 ----ANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
N++V + + ++L+ LF YG + +++ D G
Sbjct: 195 RATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKG 240
>gi|397478151|ref|XP_003810419.1| PREDICTED: polyadenylate-binding protein 5-like [Pan paniscus]
Length = 382
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 51/87 (58%), Gaps = 2/87 (2%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKG--ANLYVSGLP 89
T LGYG+VN+ P DAE A+NT+N + K ++ +++P K N+++ L
Sbjct: 55 TRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLD 114
Query: 90 KHMSQQELESLFSPYGRIITSRILCDN 116
K + + L LFS +G I++ +++CD+
Sbjct: 115 KSIDNRALFYLFSAFGNILSCKVVCDD 141
Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 50/107 (46%), Gaps = 18/107 (16%)
Query: 25 ICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESI------ 78
+ V ++ +S G+GFV Y E A+KA+ L+G + K + V A+ E +
Sbjct: 228 VKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRR 287
Query: 79 ------------KGANLYVSGLPKHMSQQELESLFSPYGRIITSRIL 113
G +Y+ L + ++ ++L+ FS +G I ++++
Sbjct: 288 FERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVM 334
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 47/106 (44%), Gaps = 9/106 (8%)
Query: 26 CVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVS-YARPSSESIKG---- 80
C + S GY +V++ A +AI +NG+RL N+ + V + P + +
Sbjct: 135 CKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRD 194
Query: 81 ----ANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
N++V + + ++L+ LF YG + +++ D G
Sbjct: 195 RATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKG 240
>gi|431922856|gb|ELK19640.1| Polyadenylate-binding protein 5 [Pteropus alecto]
Length = 373
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 51/87 (58%), Gaps = 2/87 (2%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKG--ANLYVSGLP 89
T LGYG+VN+ P DAE A+NT+N + K ++ +++P K N+++ L
Sbjct: 55 TRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLD 114
Query: 90 KHMSQQELESLFSPYGRIITSRILCDN 116
K + + L LFS +G I++ +++CD+
Sbjct: 115 KSIDNRALFYLFSAFGNILSCKVVCDD 141
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 45/97 (46%)
Query: 26 CVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYV 85
C + S GY +V++ A +AI +NG+RL N+ + + + + N++V
Sbjct: 135 CKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYRAAEVRTRDRATFTNVFV 194
Query: 86 SGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
M ++L+ +FS YG + +++ D G
Sbjct: 195 KNFGDDMDDEKLKDIFSEYGPTESVKVIRDASGKSKG 231
Score = 40.0 bits (92), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 50/109 (45%), Gaps = 18/109 (16%)
Query: 25 ICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESI------ 78
+ V ++ +S G+GFV Y E A+KA+ L+G + K + V A+ E +
Sbjct: 219 VKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRR 278
Query: 79 ------------KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
G +Y+ L + + ++L+ FS +G I ++++ +
Sbjct: 279 FERLRLKEKSRPPGVPVYIKNLDETIDDEKLKEEFSSFGSISRAKVMVE 327
>gi|405973173|gb|EKC37903.1| Polyadenylate-binding protein 4 [Crassostrea gigas]
Length = 465
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 29/86 (33%), Positives = 54/86 (62%), Gaps = 2/86 (2%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+H+P DAE+A++T+N ++ + I++++ + PS N+++ L
Sbjct: 47 TRRSLGYAYVNFHQPADAERALDTMNFDIIKGRPIRITWYQRDPSLRKSGVGNVFIKKLD 106
Query: 90 KHMSQQELESLFSPYGRIITSRILCD 115
K + + L FS +G I + +I+CD
Sbjct: 107 KSIDNKALYDTFSAFGNISSCKIVCD 132
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 30/114 (26%), Positives = 55/114 (48%), Gaps = 8/114 (7%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESI 78
F + C + S GYGFV++ E A AI +NG+ L K + V E +
Sbjct: 120 AFGNISSCKIVCDEHGSRGYGFVHFETDEAARIAIEKVNGMLLNGKKVFVGRFMSRRERL 179
Query: 79 --------KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKY 124
K N+YV L + ++L +F YG+II+++++ D+ + ++ ++
Sbjct: 180 EVLDLGMRKFNNVYVKNLSEETDDEKLREIFELYGKIISAKVMIDDSSRKSKQF 233
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 23/111 (20%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGL----------RLQNKT-----IKVSYARPSS 75
S+ +S +GFV++ PE A+KA+ LNG R Q K +K + R
Sbjct: 226 SSRKSKQFGFVSFENPEAAKKAVEALNGNDNAGKILYVGRAQTKIERQAELKEKFERIRK 285
Query: 76 ESI---KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGK 123
E I +G NL+V L ++ + L F+ +G I +++++ TENG+
Sbjct: 286 ERINRYQGVNLFVKNLDDNIDDKRLRKEFAQFGTITSAKVM-----TENGR 331
>gi|242096254|ref|XP_002438617.1| hypothetical protein SORBIDRAFT_10g022900 [Sorghum bicolor]
gi|241916840|gb|EER89984.1| hypothetical protein SORBIDRAFT_10g022900 [Sorghum bicolor]
Length = 631
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVS-YARPSSESIKGANLYVSGLP 89
S QS GYGFV Y E A+ AIN LNG+ ++ + V + R + +K N+Y+ LP
Sbjct: 160 SAGQSKGYGFVQYETEESAQDAINRLNGMLANDREMFVGLHMRRRNREVKFTNVYIKNLP 219
Query: 90 KHMSQQELESLFSPYGRIITSRILCD 115
S +L F+P+G I ++ ++ D
Sbjct: 220 TEFSDDDLRQEFAPFGEITSAVVMRD 245
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
Query: 30 ISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSG 87
I + SLGYG+VN++ ++A A+ LN L K I+V ++ PS ANL+V
Sbjct: 72 IVSGVSLGYGYVNFYSRQEATCALEALNFAPLSGKHIRVMFSNRDPSLRKSGRANLFVKN 131
Query: 88 LPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
L + + L +FS +G I++ ++ D+ G
Sbjct: 132 LEPSIDSKNLYEMFSSFGTILSCKVATDSAGQSKG 166
Score = 44.3 bits (103), Expect = 0.014, Method: Composition-based stats.
Identities = 25/104 (24%), Positives = 48/104 (46%), Gaps = 19/104 (18%)
Query: 38 YGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE-------------------SI 78
+GFVN+ +PE A +A+ NG + +KT+ V A+ +E
Sbjct: 253 FGFVNFEKPEFALEAVKKANGKVINDKTLYVGRAQKKAERQAELKTKFKQEDRDKKVDKP 312
Query: 79 KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
G NLY+ + ++ + L+ LF +G++ + +++ D G
Sbjct: 313 NGINLYLKNIDDSINDEGLKILFEEFGQVTSCKVMVDAQGRSKG 356
>gi|403295651|ref|XP_003938748.1| PREDICTED: polyadenylate-binding protein 5 [Saimiri boliviensis
boliviensis]
Length = 382
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 51/87 (58%), Gaps = 2/87 (2%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKG--ANLYVSGLP 89
T LGYG+VN+ P DAE A+NT+N + K ++ +++P K N+++ L
Sbjct: 55 TRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLD 114
Query: 90 KHMSQQELESLFSPYGRIITSRILCDN 116
K + + L LFS +G I++ +++CD+
Sbjct: 115 KSIDNRALFYLFSAFGNILSCKVVCDD 141
Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 50/107 (46%), Gaps = 18/107 (16%)
Query: 25 ICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESI------ 78
+ V ++ +S G+GFV Y E A+KA+ L+G + K + V A+ E +
Sbjct: 228 VKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRR 287
Query: 79 ------------KGANLYVSGLPKHMSQQELESLFSPYGRIITSRIL 113
G +Y+ L + ++ ++L+ FS +G I ++++
Sbjct: 288 FERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVM 334
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 47/106 (44%), Gaps = 9/106 (8%)
Query: 26 CVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVS-YARPSSESIKG---- 80
C + S GY +V++ A +AI +NG+RL N+ + V + P + +
Sbjct: 135 CKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRD 194
Query: 81 ----ANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
N++V + + ++L+ LF YG + +++ D G
Sbjct: 195 RATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKG 240
>gi|296235923|ref|XP_002763106.1| PREDICTED: polyadenylate-binding protein 5 [Callithrix jacchus]
gi|14571652|emb|CAC42812.1| Poly(A)-binding protein cytoplasmic 5 [Callithrix jacchus]
Length = 382
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 51/87 (58%), Gaps = 2/87 (2%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKG--ANLYVSGLP 89
T LGYG+VN+ P DAE A+NT+N + K ++ +++P K N+++ L
Sbjct: 55 TRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLD 114
Query: 90 KHMSQQELESLFSPYGRIITSRILCDN 116
K + + L LFS +G I++ +++CD+
Sbjct: 115 KSIDNRALFYLFSAFGNILSCKVVCDD 141
Score = 39.3 bits (90), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 50/107 (46%), Gaps = 18/107 (16%)
Query: 25 ICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESI------ 78
+ V ++ +S G+GFV Y E A+KA+ L+G + K + V A+ E +
Sbjct: 228 VKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSVDGKVLYVGRAQKKIERLAELRRR 287
Query: 79 ------------KGANLYVSGLPKHMSQQELESLFSPYGRIITSRIL 113
G +Y+ L + ++ ++L+ FS +G I ++++
Sbjct: 288 FERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVM 334
Score = 38.5 bits (88), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 9/106 (8%)
Query: 26 CVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVS-YARPSSESIKG---- 80
C + S GY +V++ A +AI +NG+RL N+ + V + P + +
Sbjct: 135 CKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRD 194
Query: 81 ----ANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
N++V + + + ++L+ LF YG + +++ D G
Sbjct: 195 RATFTNVFVKNIGEDIDDEKLKELFCEYGPTESVKVIRDASGKSKG 240
>gi|356505295|ref|XP_003521427.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Glycine max]
Length = 632
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 57/95 (60%), Gaps = 6/95 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGA--NLYVSGL 88
ST +SL YG+VN+ P+DA +AI N L K ++V ++R ++ K A NL+V L
Sbjct: 48 STGKSLCYGYVNFVSPQDAIRAIELKNNSTLNGKAMRVMWSRRDPDARKNAIGNLFVKNL 107
Query: 89 PKHMSQQELESLFSPYGRIITSRILCDNLATENGK 123
P+ + L+ +F YG I++S+++ +E+GK
Sbjct: 108 PESIDNAGLQDMFKKYGNILSSKVVM----SEDGK 138
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 56/106 (52%), Gaps = 18/106 (16%)
Query: 35 SLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE------------------ 76
S G+GFVNY P+DA++A+ +NG +L +K + V+ A+ +E
Sbjct: 230 SKGFGFVNYDNPDDAKRAMEAMNGSKLGSKILYVARAQKKAEREQILHHQFEEKRKEQIL 289
Query: 77 SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
KG+N+YV + H+S +EL FS G I +++I+ D+ G
Sbjct: 290 KYKGSNIYVKNIDDHVSDEELRDHFSACGIITSAKIMRDDKGISKG 335
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 6/102 (5%)
Query: 27 VFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKV-SYARPSSESIKG----- 80
V + +S GYGFV + E + AI LNG + +K + V + + S + G
Sbjct: 131 VVMSEDGKSKGYGFVQFESEESSNVAIEKLNGSTVGDKQLYVGKFVKKSDRILPGPDARY 190
Query: 81 ANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
NLY+ L +S+ L+ FS +G+I++ I DN+ G
Sbjct: 191 TNLYMKNLDLDVSEATLQEKFSSFGKIVSLVIAKDNIGMSKG 232
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 35 SLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR 72
S G+GFV + PE+A KA+NT +G K + V+ A+
Sbjct: 333 SKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYVALAQ 370
>gi|432118841|gb|ELK38215.1| Polyadenylate-binding protein 5 [Myotis davidii]
Length = 382
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 51/87 (58%), Gaps = 2/87 (2%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKG--ANLYVSGLP 89
T LGYG+VN+ P DAE A+NT+N + K ++ +++P K N+++ L
Sbjct: 55 TRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLD 114
Query: 90 KHMSQQELESLFSPYGRIITSRILCDN 116
K + + L LFS +G I++ +++CD+
Sbjct: 115 KSIDNRALFYLFSAFGNILSCKVVCDD 141
Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 49/109 (44%), Gaps = 18/109 (16%)
Query: 25 ICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESI------ 78
+ V ++ +S G+GFV Y E A+KA+ L+G + K + V A+ E +
Sbjct: 228 VKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKALYVGRAQKKIERLAELRRR 287
Query: 79 ------------KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
G +Y+ L + + ++L FS +G I ++++ +
Sbjct: 288 FERLKVKEKSRPPGVPVYIKNLDETIDDEKLREEFSSFGSISRAKVMVE 336
Score = 38.5 bits (88), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 47/106 (44%), Gaps = 9/106 (8%)
Query: 26 CVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVS-YARPSSESIKG---- 80
C + S GY +V++ A +AI +NG+RL N+ + V + P + +
Sbjct: 135 CKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRD 194
Query: 81 ----ANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
N++V + ++L+ +FS YG + +++ D G
Sbjct: 195 RATFTNVFVKNFGDEVDDEKLKEIFSEYGPTESVKVIRDASGKSKG 240
>gi|426257905|ref|XP_004022562.1| PREDICTED: polyadenylate-binding protein 5-like [Ovis aries]
Length = 382
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 51/87 (58%), Gaps = 2/87 (2%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKG--ANLYVSGLP 89
T LGYG+VN+ P DAE A+NT+N + K ++ +++P K N+++ L
Sbjct: 55 TRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGIGNIFIKNLD 114
Query: 90 KHMSQQELESLFSPYGRIITSRILCDN 116
K + + L LFS +G I++ +++CD+
Sbjct: 115 KSIDNRALFYLFSAFGSILSCKVVCDD 141
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 21/119 (17%)
Query: 25 ICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESI------ 78
+ V ++ +S G+GFV Y E A+KA+ L+G + K + V A+ E +
Sbjct: 228 VKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRR 287
Query: 79 ------------KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYY 125
G +Y+ L + + ++L+ FS +G I ++++ + E GK +
Sbjct: 288 FERLRLKEKTRPPGVPIYIKNLDETIDDEKLKEEFSSFGSISRAKVMVE---VEQGKGF 343
Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 46/106 (43%), Gaps = 9/106 (8%)
Query: 26 CVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVS-YARPSSESIKG---- 80
C + S GY +V++ A +AI +NG+RL N+ + V + P + +
Sbjct: 135 CKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRD 194
Query: 81 ----ANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
N++V M +L+ LFS YG + +++ D G
Sbjct: 195 RATFTNVFVKNFGDDMDDDKLKELFSEYGPTESVKVIRDASGKSKG 240
>gi|405977322|gb|EKC41780.1| Polyadenylate-binding protein 4 [Crassostrea gigas]
Length = 646
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 54/86 (62%), Gaps = 2/86 (2%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ + I++ +++ PS N+++ L
Sbjct: 53 TRRSLGYAYVNFQQPADAERALDTMNFDTIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLD 112
Query: 90 KHMSQQELESLFSPYGRIITSRILCD 115
K + + L FS +G I++ +I+CD
Sbjct: 113 KSIDNKALYDTFSAFGNILSCKIVCD 138
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 8/106 (7%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESI 78
F + C + S GYGFV++ E A AI +NG+ L K + V E +
Sbjct: 126 AFGNILSCKIVCDEHGSRGYGFVHFETEEAARIAIEKVNGMLLNGKKVFVGRFMSRRERL 185
Query: 79 --------KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
K N+YV + ++ + L +F PYG+II+++++ D+
Sbjct: 186 EVLGDKMRKFNNVYVKNFSEEINDETLRDMFEPYGKIISAKVMTDD 231
Score = 39.3 bits (90), Expect = 0.46, Method: Composition-based stats.
Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 23/101 (22%)
Query: 41 VNYHRPEDAEKAINTLNGL----------RLQNKT-----IKVSYARPSSESI---KGAN 82
V++ PE AEKA+ LNG R Q K +K + R E I +G N
Sbjct: 242 VSFEDPEAAEKAVEALNGNDNSGKILYVGRAQKKIERQAELKEKFERIRMERINRYQGVN 301
Query: 83 LYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGK 123
LYV L ++ + L F+ +G I +++++ TE G+
Sbjct: 302 LYVKNLDDNIDDERLRKEFAQFGTITSAKVM-----TEGGR 337
>gi|197097448|ref|NP_001126434.1| polyadenylate-binding protein 5 [Pongo abelii]
gi|55731438|emb|CAH92432.1| hypothetical protein [Pongo abelii]
Length = 382
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 51/87 (58%), Gaps = 2/87 (2%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKG--ANLYVSGLP 89
T LGYG+VN+ P DAE A+NT+N + K ++ +++P K N+++ L
Sbjct: 55 TRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLD 114
Query: 90 KHMSQQELESLFSPYGRIITSRILCDN 116
K + + L LFS +G I++ +++CD+
Sbjct: 115 KSIDNRALFYLFSAFGDILSCKVVCDD 141
Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 49/112 (43%), Gaps = 9/112 (8%)
Query: 20 FSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVS-YARPSSESI 78
F D C + S GY +V++ A +AI +NG+RL N+ + V + P +
Sbjct: 129 FGDILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAA 188
Query: 79 KG--------ANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ N++V + + ++L+ LF YG + +++ D G
Sbjct: 189 EVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKG 240
Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 50/107 (46%), Gaps = 18/107 (16%)
Query: 25 ICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESI------ 78
+ V ++ +S G+GFV Y E A+KA+ L+G + K + V A+ E +
Sbjct: 228 VKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRR 287
Query: 79 ------------KGANLYVSGLPKHMSQQELESLFSPYGRIITSRIL 113
G +Y+ L + ++ ++L+ FS +G I ++++
Sbjct: 288 FERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVM 334
>gi|16768648|gb|AAL28543.1| HL01227p [Drosophila melanogaster]
Length = 322
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 57/103 (55%), Gaps = 4/103 (3%)
Query: 38 YGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYA---RPS-SESIKGANLYVSGLPKHMS 93
YGFV++ +P AE A+ L G +Q + KV RP+ + NLY++ LP H
Sbjct: 177 YGFVDFEQPAFAECAVKGLQGKGVQAQMAKVGIWVLHRPAIQQEQDPTNLYIANLPPHFK 236
Query: 94 QQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLRR 136
+ +LE++ S YG+++++RIL D G ++ + RE+ +
Sbjct: 237 ETDLEAMLSKYGQVVSTRILRDQQMNSKGVGFARMESREKCEQ 279
>gi|410129791|dbj|BAM64857.1| RNA binding protein Elav, partial [Lamellibrachia satsuma]
Length = 153
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 41/54 (75%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLG 129
ESIKGANLY+SGLPK+++QQ++E++ +P G IITSRI+ D+ + G+G
Sbjct: 1 ESIKGANLYISGLPKNITQQDIENMCAPCGNIITSRIVSDSQTGTETRISKGVG 54
>gi|195127381|ref|XP_002008147.1| GI11982 [Drosophila mojavensis]
gi|251765068|sp|B4KX02.1|SHEP_DROMO RecName: Full=Protein alan shepard
gi|193919756|gb|EDW18623.1| GI11982 [Drosophila mojavensis]
Length = 592
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 32/107 (29%), Positives = 60/107 (56%), Gaps = 4/107 (3%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVS---YARPSSESIKG-ANLYVS 86
+T + GYGFV++ +P AE A+ L +Q + KV RP+ + + NLY++
Sbjct: 265 TTNKCKGYGFVDFEQPAYAEGAVKGLQAKGVQAQMAKVGIWVLHRPAIQQEQDPTNLYIA 324
Query: 87 GLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
LP H + +LE++ + +G+++++RIL D G ++ + RE+
Sbjct: 325 NLPPHFKETDLEAMLAKFGQVVSTRILRDQQMNSKGVGFARMESREK 371
>gi|300796236|ref|NP_001179218.1| polyadenylate-binding protein 5 [Bos taurus]
gi|296471041|tpg|DAA13156.1| TPA: poly(A) binding protein, cytoplasmic 5 [Bos taurus]
gi|440903676|gb|ELR54310.1| Polyadenylate-binding protein 5 [Bos grunniens mutus]
Length = 382
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 51/87 (58%), Gaps = 2/87 (2%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKG--ANLYVSGLP 89
T LGYG+VN+ P DAE A+NT+N + K ++ +++P K N+++ L
Sbjct: 55 TRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGIGNIFIKNLD 114
Query: 90 KHMSQQELESLFSPYGRIITSRILCDN 116
K + + L LFS +G I++ +++CD+
Sbjct: 115 KSIDNRALFYLFSAFGSILSCKVVCDD 141
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 9/106 (8%)
Query: 26 CVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVS-YARP--------SSE 76
C + S GY +V++ A +AI +NG+RL N+ + V + P + +
Sbjct: 135 CKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRD 194
Query: 77 SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
N++V M +L+ LFS YG + +++ D+ G
Sbjct: 195 KATFTNVFVKNFGDDMDDDKLKELFSEYGPTESVKVIRDSSGKSKG 240
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 50/109 (45%), Gaps = 18/109 (16%)
Query: 25 ICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESI------ 78
+ V S+ +S G+GFV Y E A+KA+ L+G + K + V A+ E +
Sbjct: 228 VKVIRDSSGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRR 287
Query: 79 ------------KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
G +Y+ L + + ++L+ FS +G I ++++ +
Sbjct: 288 FERLRLKEKSRPPGVPIYIKNLDETIDDEKLKEEFSSFGSISRAKVMVE 336
>gi|332858528|ref|XP_003317002.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like isoform 1
[Pan troglodytes]
Length = 330
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 58/99 (58%), Gaps = 8/99 (8%)
Query: 26 CVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSESIKGA-- 81
C S G+GFV++ E A++AINT+NG+ L ++ + V + +R E+ GA
Sbjct: 128 CKVACDEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARA 187
Query: 82 ----NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
N+YV LP + +Q L+ LFS +G++++ +++ DN
Sbjct: 188 LEFTNIYVKNLPVDVDEQGLQELFSQFGKMLSVKVMRDN 226
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 30 ISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSG 87
++T +SLGY ++N+ +P DAE+A++T+N L+ + I++ +++ P N+++
Sbjct: 46 VATRRSLGYAYINFQQPADAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKN 105
Query: 88 LPKHMSQQELESLFSPYGRIITSRILCD 115
L + + L FS +G I++ ++ CD
Sbjct: 106 LEDSIDNKALYDTFSTFGNILSCKVACD 133
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 18/105 (17%)
Query: 25 ICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE-------- 76
+ V ++ S +GFVN+ + E+A+KA+ +NG + + + A+ E
Sbjct: 220 VKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRR 279
Query: 77 ----------SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSR 111
+G NLYV L + +L FSPYG I +++
Sbjct: 280 FEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAK 324
>gi|21355069|ref|NP_650473.1| CG5213 [Drosophila melanogaster]
gi|7300034|gb|AAF55205.1| CG5213 [Drosophila melanogaster]
gi|19528057|gb|AAL90143.1| AT22957p [Drosophila melanogaster]
gi|220949694|gb|ACL87390.1| CG5213-PA [synthetic construct]
gi|220958914|gb|ACL92000.1| CG5213-PA [synthetic construct]
Length = 251
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 48/82 (58%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T S YGFV+Y A A+N ++G + K +KV++ARPS ++LYV LP +
Sbjct: 78 TGISCCYGFVDYVSERQAAAAVNGMDGYETRGKRLKVAFARPSEYESTSSSLYVGNLPTY 137
Query: 92 MSQQELESLFSPYGRIITSRIL 113
M ++++ LF+ YG I+ +L
Sbjct: 138 MDEKKVRELFATYGNIVDVNLL 159
>gi|47933430|gb|AAT39343.1| polyadenylate binding protein [Oikopleura dioica]
Length = 610
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 54/86 (62%), Gaps = 2/86 (2%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K I++ +++ PS N+++ L
Sbjct: 39 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRRSGQGNVFIKNLD 98
Query: 90 KHMSQQELESLFSPYGRIITSRILCD 115
+ + + L FS +G I++ +++CD
Sbjct: 99 RSIDNKALYDTFSSFGNILSCKVVCD 124
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 26/104 (25%), Positives = 52/104 (50%), Gaps = 8/104 (7%)
Query: 20 FSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIK 79
F + C + S G+GFV+Y E A++AI +NG+ +++K + V+ + ++ ++
Sbjct: 113 FGNILSCKVVCDINGSKGFGFVHYESDESAQRAIEKVNGMLMEDKKVFVARFKSRNDRMR 172
Query: 80 G--------ANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
NL+V LP L F +G +++ +++CD
Sbjct: 173 EFGDAAKHFTNLFVKNLPDSWDTDALLKNFEQFGEVVSHKVICD 216
Score = 37.4 bits (85), Expect = 2.1, Method: Composition-based stats.
Identities = 23/103 (22%), Positives = 45/103 (43%), Gaps = 18/103 (17%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTI---------------KVSYARPSS 75
+T S +GF+++ + AE A+ ++ ++ K + K Y +
Sbjct: 218 TTGLSKCHGFISFKEHDQAEAAVEIMHEKEIEGKKLYCGRAQKKAERSSELKAKYEKIKQ 277
Query: 76 ESIK---GANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
E I+ G NLYV L + + L F +G I +++++ D
Sbjct: 278 ERIQRYQGVNLYVKNLDDSIDDEGLREAFKQFGNITSAKVITD 320
>gi|15228191|ref|NP_188259.1| poly(A) binding protein 6 [Arabidopsis thaliana]
gi|2062166|gb|AAB63640.1| poly(A)-binding protein isolog [Arabidopsis thaliana]
gi|9279720|dbj|BAB01277.1| poly(A) binding protein-like [Arabidopsis thaliana]
gi|332642284|gb|AEE75805.1| poly(A) binding protein 6 [Arabidopsis thaliana]
Length = 537
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 73/143 (51%), Gaps = 25/143 (17%)
Query: 2 VYQTLLNKLFTYEKVHLGFSD----AEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLN 57
VY L + T + +H FS + + V +S G+GFVN+ PE+A+KA+ +L
Sbjct: 204 VYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAMESLC 263
Query: 58 GLRLQNKTIKVSYARPSSE-----------------SIKGANLYVSGLPKHMSQQELESL 100
GL+L +K + V A E +++ +NLYV L + M++ L +
Sbjct: 264 GLQLGSKKLFVGKALKKDERREMLKQKFSDNFIAKPNMRWSNLYVKNLSESMNETRLREI 323
Query: 101 FSPYGRIITSRILCDNLATENGK 123
F YG+I++++++C ENG+
Sbjct: 324 FGCYGQIVSAKVMCH----ENGR 342
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 9/92 (9%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKV-------SYARPSSESIKGANLY 84
T +S+ Y ++N+ P A A+ LN L+ K +++ +Y R + ANLY
Sbjct: 58 TGKSMCYAYINFDSPFSASNAMTRLNHSDLKGKAMRIMWSQRDLAYRRRTRTGF--ANLY 115
Query: 85 VSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
V L ++ LE +F P+G I++ +++ +N
Sbjct: 116 VKNLDSSITSSCLERMFCPFGSILSCKVVEEN 147
Score = 38.5 bits (88), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 6/115 (5%)
Query: 14 EKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARP 73
E++ F C + QS G+GFV + + A A + L+G + K + V+
Sbjct: 129 ERMFCPFGSILSCKVVEENGQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFVAKFIN 188
Query: 74 SSESIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
E A N+YV L + ++ L +LFS YG + + ++ D + G
Sbjct: 189 KDERAAMAGNQDSTNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSRG 243
Score = 35.0 bits (79), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 31/68 (45%)
Query: 27 VFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVS 86
V +S G+GFV + E++++A LNG + K I V A + IK Y
Sbjct: 335 VMCHENGRSKGFGFVCFSNCEESKQAKRYLNGFLVDGKPIVVRVAERKEDRIKRLQQYFQ 394
Query: 87 GLPKHMSQ 94
P+ +Q
Sbjct: 395 AQPRQYTQ 402
>gi|225716538|gb|ACO14115.1| RNA-binding motif, single-stranded-interacting protein 1 [Esox
lucius]
Length = 376
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 56/102 (54%), Gaps = 7/102 (6%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA++ L +Q + K P+ NLY+S LP
Sbjct: 82 TTNKCKGYGFVDFDSPSAAQKAVHALKTSGIQAQMAKQQEQDPT-------NLYISNLPV 134
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRE 132
+ +QELE L P+G++I++R+L D G ++ + +E
Sbjct: 135 SIDEQELEGLLRPFGQVISTRVLRDYSGASRGVGFARMESKE 176
>gi|47219550|emb|CAG09904.1| unnamed protein product [Tetraodon nigroviridis]
Length = 623
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K I++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFSQPADAERALDTMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 58.5 bits (140), Expect = 9e-07, Method: Composition-based stats.
Identities = 30/102 (29%), Positives = 51/102 (50%), Gaps = 18/102 (17%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE--------------- 76
T +S G+GF++Y + EDA KA+ +NG L KT+ V A+ E
Sbjct: 227 TGKSRGFGFISYEKHEDANKAVEDMNGTELNGKTVFVGRAQKKMERQAELKRKFEMLKQE 286
Query: 77 ---SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+G NLY+ L + ++L FSP+G I +++++ +
Sbjct: 287 RISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE 328
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 53/112 (47%), Gaps = 8/112 (7%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GY FV++ + A++AI +NG+ L ++ + V +R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ GA N+Y+ M+ + L+ LF YG+ ++ +++ D G
Sbjct: 181 AELGAKAKEFTNVYIKNFGDDMNDERLKELFDKYGKTLSVKVMTDPTGKSRG 232
Score = 36.2 bits (82), Expect = 5.0, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + +K + V+ A+ E
Sbjct: 326 MLEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|405970795|gb|EKC35670.1| Polyadenylate-binding protein 1 [Crassostrea gigas]
Length = 462
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 54/86 (62%), Gaps = 2/86 (2%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ + I++ +++ PS N+++ L
Sbjct: 53 TRRSLGYAYVNFQQPADAERALDTMNFDTIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLD 112
Query: 90 KHMSQQELESLFSPYGRIITSRILCD 115
K + + L FS +G I++ +I+CD
Sbjct: 113 KSIDNKALYDTFSAFGNILSCKIVCD 138
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 8/106 (7%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESI 78
F + C + S GYGFV++ E A AI +NG+ L K + V E +
Sbjct: 126 AFGNILSCKIVCDEHGSRGYGFVHFETEEAARIAIEKVNGMLLNGKKVFVGRFMSRRERL 185
Query: 79 --------KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
K N+YV + ++ + L +F PYG+II+++++ D+
Sbjct: 186 EVLGDKMRKFNNVYVKNFSEEINDETLRDMFEPYGKIISAKVMTDD 231
>gi|251765114|sp|B3M3R5.2|SHEP_DROAN RecName: Full=Protein alan shepard
Length = 597
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 33/100 (33%), Positives = 57/100 (57%), Gaps = 4/100 (4%)
Query: 38 YGFVNYHRPEDAEKAINTLNGLRLQNKTIKVS---YARPSSESIKG-ANLYVSGLPKHMS 93
YGFV++ +P AE A+ L G +Q + KV RP+ + + NLY++ LP H
Sbjct: 277 YGFVDFEQPAFAECAVKGLQGKGVQAQMAKVGIWVLHRPAIQQEQDPTNLYIANLPPHYK 336
Query: 94 QQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
+ +LE++ S YG+++++RIL D G ++ + RE+
Sbjct: 337 ETDLEAMLSKYGQVVSTRILRDQQMNSKGVGFARMESREK 376
>gi|148232824|ref|NP_001080204.1| polyadenylate-binding protein 1-A [Xenopus laevis]
gi|623598|gb|AAA60936.1| poly(A)-binding protein [Xenopus laevis]
Length = 633
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 29/93 (31%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ + +++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 52.4 bits (124), Expect = 5e-05, Method: Composition-based stats.
Identities = 32/113 (28%), Positives = 57/113 (50%), Gaps = 12/113 (10%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GYGFV++ E AE+AI+ +NG+ L ++ + V +R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGK 123
+ GA N+Y+ M+ + L+ +F YG ++ +++ D +NGK
Sbjct: 181 AELGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTD----DNGK 229
Score = 48.9 bits (115), Expect = 7e-04, Method: Composition-based stats.
Identities = 27/101 (26%), Positives = 49/101 (48%), Gaps = 18/101 (17%)
Query: 33 AQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE---------------- 76
+S G+GFV++ R EDA+KA++ + G + K++ V A+ E
Sbjct: 228 GKSKGFGFVSFERHEDAQKAVDEMYGKDMNGKSMFVGRAQKKVERQTELKRKFEQMNQDR 287
Query: 77 --SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+G NLYV L + + L F P+G I +++++ +
Sbjct: 288 ITRYQGVNLYVKNLDDGIDDERLRKEFLPFGTITSAKVMME 328
Score = 36.2 bits (82), Expect = 4.6, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGL 88
++ +S G+GFV + PE+A KA+ +NG + K + V+ A+ E + A+L +
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE--RQAHLTNQYM 383
Query: 89 PKHMSQQELESLFSPY 104
+ S + + +PY
Sbjct: 384 QRMASVRVPNPVINPY 399
>gi|313229163|emb|CBY23748.1| unnamed protein product [Oikopleura dioica]
Length = 570
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 54/86 (62%), Gaps = 2/86 (2%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K I++ +++ PS N+++ L
Sbjct: 39 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRRSGQGNVFIKNLD 98
Query: 90 KHMSQQELESLFSPYGRIITSRILCD 115
+ + + L FS +G I++ +++CD
Sbjct: 99 RSIDNKALYDTFSSFGNILSCKVVCD 124
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 26/104 (25%), Positives = 52/104 (50%), Gaps = 8/104 (7%)
Query: 20 FSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIK 79
F + C + S G+GFV+Y E A++AI +NG+ +++K + V+ + ++ ++
Sbjct: 113 FGNILSCKVVCDINGSKGFGFVHYESDESAQRAIEKVNGMLMEDKKVFVARFKSRNDRMR 172
Query: 80 G--------ANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
NL+V LP L F +G +++ +++CD
Sbjct: 173 EFGDAAKHFTNLFVKNLPDSWDTDALLKNFEQFGEVVSHKVICD 216
Score = 37.4 bits (85), Expect = 2.2, Method: Composition-based stats.
Identities = 23/103 (22%), Positives = 45/103 (43%), Gaps = 18/103 (17%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTI---------------KVSYARPSS 75
+T S +GF+++ + AE A+ ++ ++ K + K Y +
Sbjct: 218 TTGLSKCHGFISFKEHDQAEAAVEIMHEKEIEGKKLYCGRAQKKAERSSELKAKYEKIKQ 277
Query: 76 ESIK---GANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
E I+ G NLYV L + + L F +G I +++++ D
Sbjct: 278 ERIQRYQGVNLYVKNLDDSIDDEGLREAFKQFGNITSAKVITD 320
>gi|94730404|sp|P20965.3|PABPA_XENLA RecName: Full=Polyadenylate-binding protein 1-A; Short=PABP-1-A;
Short=Poly(A)-binding protein 1-A; Short=xPABP1-A;
AltName: Full=Cytoplasmic poly(A)-binding protein 1-A
gi|30353795|gb|AAH52100.1| Pabpc1 protein [Xenopus laevis]
Length = 633
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 29/93 (31%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ + +++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 52.4 bits (124), Expect = 5e-05, Method: Composition-based stats.
Identities = 32/113 (28%), Positives = 57/113 (50%), Gaps = 12/113 (10%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GYGFV++ E AE+AI+ +NG+ L ++ + V +R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGK 123
+ GA N+Y+ M+ + L+ +F YG ++ +++ D +NGK
Sbjct: 181 AELGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTD----DNGK 229
Score = 52.0 bits (123), Expect = 8e-05, Method: Composition-based stats.
Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 18/101 (17%)
Query: 33 AQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE---------------- 76
+S G+GFV++ R EDA+KA++ +NG + K++ V A+ E
Sbjct: 228 GKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDR 287
Query: 77 --SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+G NLYV L + + L F P+G I +++++ +
Sbjct: 288 ITRYQGVNLYVKNLDDGIDDERLRKEFLPFGTITSAKVMME 328
Score = 36.2 bits (82), Expect = 4.6, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGL 88
++ +S G+GFV + PE+A KA+ +NG + K + V+ A+ E + A+L +
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE--RQAHLTNQYM 383
Query: 89 PKHMSQQELESLFSPY 104
+ S + + +PY
Sbjct: 384 QRMASVRVPNPVINPY 399
>gi|64970|emb|CAA40721.1| polyA binding protein [Xenopus laevis]
Length = 633
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 29/93 (31%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ + +++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 52.4 bits (124), Expect = 5e-05, Method: Composition-based stats.
Identities = 32/113 (28%), Positives = 57/113 (50%), Gaps = 12/113 (10%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GYGFV++ E AE+AI+ +NG+ L ++ + V +R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGK 123
+ GA N+Y+ M+ + L+ +F YG ++ +++ D +NGK
Sbjct: 181 AELGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTD----DNGK 229
Score = 52.0 bits (123), Expect = 8e-05, Method: Composition-based stats.
Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 18/101 (17%)
Query: 33 AQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE---------------- 76
+S G+GFV++ R EDA+KA++ +NG + K++ V A+ E
Sbjct: 228 GKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDR 287
Query: 77 --SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+G NLYV L + + L F P+G I +++++ +
Sbjct: 288 ITRYQGVNLYVKNLDDGIDDERLRKEFLPFGTITSAKVMME 328
Score = 36.2 bits (82), Expect = 4.6, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGL 88
++ +S G+GFV + PE+A KA+ +NG + K + V+ A+ E + A+L +
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE--RQAHLTNQYM 383
Query: 89 PKHMSQQELESLFSPY 104
+ S + + +PY
Sbjct: 384 QRMASVRVPNPVINPY 399
>gi|351705901|gb|EHB08820.1| Polyadenylate-binding protein 5 [Heterocephalus glaber]
Length = 382
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 51/87 (58%), Gaps = 2/87 (2%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKG--ANLYVSGLP 89
T LGYG+VN+ P DAE A+NT+N + K ++ +++P K N+++ L
Sbjct: 55 TRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLD 114
Query: 90 KHMSQQELESLFSPYGRIITSRILCDN 116
K + + L LFS +G I++ +++CD+
Sbjct: 115 KSIDNRGLFYLFSAFGNILSCKVVCDD 141
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 51/106 (48%), Gaps = 9/106 (8%)
Query: 26 CVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVS-YARPSSESIKG---- 80
C + S GY +V++ A +AI +NG+RL N+ + V + P + +
Sbjct: 135 CKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRD 194
Query: 81 ----ANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
N++V L M+ ++L+ LFS YG+I + +++ D G
Sbjct: 195 RATFTNVFVKNLGDDMNDEKLKELFSEYGQIESVKVVRDASGKSKG 240
Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 50/109 (45%), Gaps = 18/109 (16%)
Query: 25 ICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIK----- 79
+ V ++ +S G+GFV Y E A+KA+ L+G + K + V A+ E +
Sbjct: 228 VKVVRDASGKSKGFGFVKYETHEAAQKAVLELHGKSMDGKVLYVGRAQKKIERLAELRRR 287
Query: 80 -------------GANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
G +Y+ L + + ++L+ FS +G I ++++ +
Sbjct: 288 FERLRLKEKSRPPGVPIYIKNLDESIDDEKLKEEFSSFGSISRAKVMME 336
>gi|119596295|gb|EAW75889.1| hCG2019100, isoform CRA_c [Homo sapiens]
Length = 433
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 58/99 (58%), Gaps = 8/99 (8%)
Query: 26 CVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSESIKGA-- 81
C S G+GFV++ E A++AINT+NG+ L ++ + V + +R E+ GA
Sbjct: 128 CKVACDEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARA 187
Query: 82 ----NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
N+YV LP + +Q L+ LFS +G++++ +++ DN
Sbjct: 188 LEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDN 226
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 30 ISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSG 87
++T +SLGY ++N+ +P DAE+A++T+N L+ + I++ +++ P N+++
Sbjct: 46 VATRRSLGYAYINFQQPADAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKN 105
Query: 88 LPKHMSQQELESLFSPYGRIITSRILCD 115
L + + L FS +G I++ ++ CD
Sbjct: 106 LEDSIDNKALYDTFSTFGNILSCKVACD 133
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 18/109 (16%)
Query: 25 ICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSES------- 77
+ V ++ S +GFVN+ + E+A+KA+ +NG + + + A+ E
Sbjct: 220 VKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRR 279
Query: 78 -----------IKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+G NLYV L + +L FSPYG I +++++ +
Sbjct: 280 FEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTE 328
>gi|410897052|ref|XP_003962013.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein
1-like [Takifugu rubripes]
Length = 397
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 50/85 (58%), Gaps = 7/85 (8%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA+ TL +Q + K P+ NLY+S LP
Sbjct: 93 TTNKCKGYGFVDFDSPSAAQKAVTTLKSTGIQAQMAKQQEQDPT-------NLYISNLPL 145
Query: 91 HMSQQELESLFSPYGRIITSRILCD 115
M +QELE++ +G++I++RIL D
Sbjct: 146 SMDEQELENMLKHFGQVISTRILRD 170
>gi|19526272|gb|AAL89666.1|AF411956_7 polyA-binding protein [Takifugu rubripes]
Length = 623
Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K I++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFSQPADAERALDTMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 32/107 (29%), Positives = 54/107 (50%), Gaps = 18/107 (16%)
Query: 27 VFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE---------- 76
V + T +S G+GFV+Y + EDA KA+ +NG L KT+ V A+ +E
Sbjct: 222 VMMDPTGKSRGFGFVSYEKHEDANKAVEDMNGTELNGKTVFVGRAQKKNERQAELKRKFE 281
Query: 77 --------SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+G NLY+ L + ++L FSP+G I +++++ +
Sbjct: 282 MLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE 328
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 52/112 (46%), Gaps = 8/112 (7%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GY FV++ + A++AI +NG+ L ++ + V +R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ GA N+Y+ M + L+ LF YG+ ++ +++ D G
Sbjct: 181 AELGAKAKEFTNVYIKNFGDDMDDERLKELFDKYGKTLSVKVMMDPTGKSRG 232
Score = 35.8 bits (81), Expect = 5.4, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + +K + V+ A+ E
Sbjct: 326 MLEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|348517413|ref|XP_003446228.1| PREDICTED: polyadenylate-binding protein 4 [Oreochromis niloticus]
Length = 627
Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K I++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFSQPADAERALDTMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/102 (29%), Positives = 51/102 (50%), Gaps = 18/102 (17%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE--------------- 76
+ +S G+GFV+Y + EDA KA+ +NG L KT+ V A+ E
Sbjct: 227 SGKSRGFGFVSYEKHEDANKAVEEMNGTELNGKTVFVGRAQKKMERQAELKRKFEQLKQE 286
Query: 77 ---SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+G NLY+ L + ++L FSP+G I +++++ +
Sbjct: 287 RISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE 328
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 26/105 (24%), Positives = 51/105 (48%), Gaps = 8/105 (7%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GY FV++ + A++AI +NG+ L ++ + V +R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+ GA N+Y+ M + L+ +F YG+ ++ +++ D
Sbjct: 181 AELGAKAKEFTNVYIKNFGDDMDDERLKEIFDKYGKTLSVKVMTD 225
Score = 35.8 bits (81), Expect = 5.4, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + +K + V+ A+ E
Sbjct: 326 MLEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|313219101|emb|CBY43303.1| unnamed protein product [Oikopleura dioica]
Length = 512
Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 54/86 (62%), Gaps = 2/86 (2%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K I++ +++ PS N+++ L
Sbjct: 39 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRRSGQGNVFIKNLD 98
Query: 90 KHMSQQELESLFSPYGRIITSRILCD 115
+ + + L FS +G I++ +++CD
Sbjct: 99 RSIDNKALYDTFSSFGNILSCKVVCD 124
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 26/104 (25%), Positives = 52/104 (50%), Gaps = 8/104 (7%)
Query: 20 FSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIK 79
F + C + S G+GFV+Y E A++AI +NG+ +++K + V+ + ++ ++
Sbjct: 113 FGNILSCKVVCDINGSKGFGFVHYESDESAQRAIEKVNGMLMEDKKVFVARFKSRNDRMR 172
Query: 80 G--------ANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
NL+V LP L F +G +++ +++CD
Sbjct: 173 EFGDAAKHFTNLFVKNLPDSWDTDALLENFEQFGEVVSHKVICD 216
Score = 37.0 bits (84), Expect = 2.4, Method: Composition-based stats.
Identities = 23/103 (22%), Positives = 45/103 (43%), Gaps = 18/103 (17%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTI---------------KVSYARPSS 75
+T S +GF+++ + AE A+ ++ ++ K + K Y +
Sbjct: 218 TTGLSKCHGFISFKEHDQAEAAVEIMHEKEIEGKKLYCGRAQKKAERSSELKAKYEKIKQ 277
Query: 76 ESIK---GANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
E I+ G NLYV L + + L F +G I +++++ D
Sbjct: 278 ERIQRYQGVNLYVKNLDDSIDDEGLREAFKQFGNITSAKVITD 320
>gi|255549774|ref|XP_002515938.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223544843|gb|EEF46358.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 608
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 70/134 (52%), Gaps = 22/134 (16%)
Query: 2 VYQTLLNKLFTYEKVHLGFSD-AEICVFLI---STAQSLGYGFVNYHRPEDAEKAINTLN 57
+Y L+K T + H FS EI +I +S G+GFV++ PEDA+KA++ LN
Sbjct: 201 LYVKNLSKDMTQDAFHNMFSAFGEIISAVIMQDHNGKSRGFGFVDFESPEDAKKAVDALN 260
Query: 58 GLRLQNKTIKVSYARPSS------------------ESIKGANLYVSGLPKHMSQQELES 99
G +L+++T+ V A+ + E K +NLYV L + +L+
Sbjct: 261 GYQLESRTLFVGRAQAKAERKKILQHEYKDIFNTHMEKFKASNLYVKNLALCIDNDKLQE 320
Query: 100 LFSPYGRIITSRIL 113
LFS G+I++++++
Sbjct: 321 LFSCSGKIVSAKVM 334
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SL YG+VN++RP DA KA++ LN L+ K +++ + + P + NLYV L
Sbjct: 56 TGRSLCYGYVNFYRPYDAYKALSNLNHTYLKGKLMRIMWCQRNPCARKSGIGNLYVKNLD 115
Query: 90 KHMSQQELESLFSPYGRIITSRIL 113
+ L+SLFS +G I++ +++
Sbjct: 116 ASIDSAGLQSLFSKFGTILSCKVV 139
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 51/106 (48%), Gaps = 12/106 (11%)
Query: 26 CVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE--------S 77
C + +S GYGFV + + A A L+ L+ K + VS SE
Sbjct: 136 CKVVEEHGKSKGYGFVQFDSEDSALAARTALHDTMLKEKKLYVSRFVKKSERTTATSYDE 195
Query: 78 IKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGK 123
+K NLYV L K M+Q ++FS +G II++ I+ D+ NGK
Sbjct: 196 LKFTNLYVKNLSKDMTQDAFHNMFSAFGEIISAVIMQDH----NGK 237
Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 27/38 (71%)
Query: 35 SLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR 72
S G+GFV + PE+A+KA+N LNG Q K++ V+ A+
Sbjct: 341 SRGFGFVCFSSPEEAKKALNALNGAVFQGKSLYVAMAQ 378
>gi|197097606|ref|NP_001126097.1| polyadenylate-binding protein 1 [Pongo abelii]
gi|55730342|emb|CAH91893.1| hypothetical protein [Pongo abelii]
Length = 636
Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K +++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDIKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 18/102 (17%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE--------------- 76
+ +S G+GFV++ R EDA+KA++ +NG L K I V A+ E
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQD 286
Query: 77 ---SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+G NLYV L + + L FSP+G I +++++ +
Sbjct: 287 RITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME 328
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 8/112 (7%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GYGFV++ E AE+AI +NG+ L ++ + V +R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ GA N+Y+ + M + L+ LF +G ++ +++ D G
Sbjct: 181 AELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKG 232
Score = 36.2 bits (82), Expect = 5.0, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + K + V+ A+ E
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRVVATKPLYVALAQRKEE 373
>gi|410898224|ref|XP_003962598.1| PREDICTED: polyadenylate-binding protein 4-like [Takifugu rubripes]
Length = 653
Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K I++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFSQPADAERALDTMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 32/107 (29%), Positives = 54/107 (50%), Gaps = 18/107 (16%)
Query: 27 VFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE---------- 76
V + T +S G+GFV+Y + EDA KA+ +NG L KT+ V A+ +E
Sbjct: 222 VMMDPTGKSRGFGFVSYEKHEDANKAVEDMNGTELNGKTVFVGRAQKKNERQAELKRKFE 281
Query: 77 --------SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+G NLY+ L + ++L FSP+G I +++++ +
Sbjct: 282 MLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE 328
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 52/112 (46%), Gaps = 8/112 (7%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GY FV++ + A++AI +NG+ L ++ + V +R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ GA N+Y+ M + L+ LF YG+ ++ +++ D G
Sbjct: 181 AELGAKAKEFTNVYIKNFGDDMDDERLKELFDKYGKTLSVKVMMDPTGKSRG 232
Score = 35.8 bits (81), Expect = 5.4, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + +K + V+ A+ E
Sbjct: 326 MLEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|72534835|ref|NP_001026846.1| poly A binding protein, cytoplasmic 1 a [Danio rerio]
gi|71534060|gb|AAH99992.1| Poly A binding protein, cytoplasmic 1 a [Danio rerio]
Length = 634
Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 29/93 (31%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ + +++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 55.8 bits (133), Expect = 6e-06, Method: Composition-based stats.
Identities = 28/102 (27%), Positives = 51/102 (50%), Gaps = 18/102 (17%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE--------------- 76
+ +S G+GFV++ R EDA++A++ +NG + K + V A+ E
Sbjct: 227 SGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYVGRAQKKGERQTELKRKFEQMKQD 286
Query: 77 ---SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+G NLYV L + + L FSP+G I +++++ +
Sbjct: 287 RMTRYQGVNLYVKNLDDGLDDERLRKEFSPFGTITSAKVMME 328
Score = 53.1 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 31/112 (27%), Positives = 55/112 (49%), Gaps = 8/112 (7%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GYGFV++ E AE+AI +NG+ L ++ + V +R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ GA N+Y+ + M ++L+ +F YG ++ R++ D+ G
Sbjct: 181 AEMGARAKEFTNVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDDSGKSKG 232
Score = 35.8 bits (81), Expect = 6.1, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + K + V+ A+ E
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 373
>gi|391332716|ref|XP_003740776.1| PREDICTED: polyadenylate-binding protein 1-like [Metaseiulus
occidentalis]
Length = 660
Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 31/100 (31%), Positives = 59/100 (59%), Gaps = 3/100 (3%)
Query: 25 ICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGAN 82
+C +IS +SLGY +VN+H+P DAE+A++T+N L+N+ +++ +++ PS N
Sbjct: 42 VCRDMISR-RSLGYAYVNFHQPGDAERALDTMNFEPLKNRPMRIMWSQRDPSLRKSGVGN 100
Query: 83 LYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+++ L K + + + FS +G I++ R+ D G
Sbjct: 101 VFIKNLHKDIDNKAIFDTFSAFGNILSCRVATDEQGNSRG 140
Score = 55.5 bits (132), Expect = 8e-06, Method: Composition-based stats.
Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 8/98 (8%)
Query: 33 AQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKG--------ANLY 84
S GYGFV++ E A +AIN +NG+ L K + V P SE + N+Y
Sbjct: 136 GNSRGYGFVHFETEEAANEAINKVNGMLLNEKKVFVGKFVPRSERERMMGDKARLFTNVY 195
Query: 85 VSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
V + + +L+ +F YG+I ++R++ D G
Sbjct: 196 VKNFGEELDDGKLKEMFEVYGKITSARVMTDQTGKSRG 233
Score = 55.1 bits (131), Expect = 9e-06, Method: Composition-based stats.
Identities = 32/104 (30%), Positives = 53/104 (50%), Gaps = 19/104 (18%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQN-KTIKVSYARPSSESI------------ 78
T +S G+GFV++ P++AE+A+ LN L N K I V A+ +E +
Sbjct: 228 TGKSRGFGFVSFENPDNAEQAVKELNDKELGNGKKIYVGRAQKKAERLSDLKRKFEQLKM 287
Query: 79 ------KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
+G NLYV L + + L F+PYG I +++++ D+
Sbjct: 288 ERMTRYQGVNLYVKNLDDVIDDERLRREFAPYGTITSAKVMMDS 331
Score = 35.4 bits (80), Expect = 7.8, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 26/40 (65%)
Query: 33 AQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR 72
A+S G+GFV + PE+A KA+ +NG + K + V+ A+
Sbjct: 334 ARSKGFGFVCFSSPEEATKAVTEMNGRIIVQKPLYVALAQ 373
>gi|432937502|ref|XP_004082431.1| PREDICTED: polyadenylate-binding protein 4-like [Oryzias latipes]
Length = 629
Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K I++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFSQPADAERALDTMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 18/104 (17%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE-------------- 76
S+ +S G+GFV++ + EDA KA+ +NG L KT+ V A+ E
Sbjct: 226 SSGKSRGFGFVSFEKHEDANKAVEEINGTELNGKTVFVGRAQKKMERQAELKRKFELLKQ 285
Query: 77 ----SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
+G NLY+ L + ++L FSP+G I +++++ ++
Sbjct: 286 ERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED 329
Score = 48.9 bits (115), Expect = 6e-04, Method: Composition-based stats.
Identities = 27/112 (24%), Positives = 54/112 (48%), Gaps = 8/112 (7%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSE 76
F + C + S GY FV++ + A++AI +NG+ L ++ + V +R E
Sbjct: 121 AFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 77 SIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ GA N+Y+ M ++L+ +F YG+ ++ +++ D+ G
Sbjct: 181 AELGAKAKEFTNVYIKNFGDEMEDEQLKEMFEKYGKTLSVKVMTDSSGKSRG 232
Score = 35.8 bits (81), Expect = 6.1, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 29 LISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
++ +S G+GFV + PE+A KA+ +NG + +K + V+ A+ E
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|7673355|gb|AAF66823.1|AF190655_1 poly(A)-binding protein [Nicotiana tabacum]
Length = 649
Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats.
Identities = 37/122 (30%), Positives = 55/122 (45%), Gaps = 18/122 (14%)
Query: 33 AQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE---------------- 76
+S +GFVN+ EDA +A+ LNG +L NK V A+ SE
Sbjct: 243 GKSRCFGFVNFENAEDAARAVEALNGYKLDNKDWFVGRAQKKSEREMELKHRFEQSAKEA 302
Query: 77 --SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERL 134
+G NLY+ L +S ++L+ LFSPYG I + +++ D G + E
Sbjct: 303 VDKSQGLNLYIKNLDDSISDEKLKELFSPYGTITSCKVMRDPSGVSKGSGFVAFSNPEEA 362
Query: 135 RR 136
R
Sbjct: 363 SR 364
Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats.
Identities = 29/95 (30%), Positives = 52/95 (54%), Gaps = 2/95 (2%)
Query: 30 ISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSG 87
+++ +SLGYG+VNY P+DA +A+ LN L K I++ Y+ P+ N+++
Sbjct: 62 LTSQRSLGYGYVNYGNPQDAARALEVLNFTPLHGKPIRIMYSNRDPTIRRSGNGNIFIKN 121
Query: 88 LPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
L K + + L FS +G I++ ++ D+ G
Sbjct: 122 LDKAIDHKALHDTFSAFGNILSCKVAVDSSGQSKG 156
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 33/99 (33%), Positives = 53/99 (53%), Gaps = 10/99 (10%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVS-YARP-----SSESIKGANLY 84
S+ QS GYGFV Y E A+KAI LNG+ L +K + V + R + + + N++
Sbjct: 150 SSGQSKGYGFVQYDSEEAAQKAIEKLNGMLLNDKQVYVGPFVRKHERDMAVDKTRFTNVF 209
Query: 85 VSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGK 123
V L + ++EL +F +G I + ++ D E+GK
Sbjct: 210 VKNLSESTLEEELRKIFGEFGAITSVAVMKD----EDGK 244
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.136 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,038,767,773
Number of Sequences: 23463169
Number of extensions: 75084813
Number of successful extensions: 238499
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 6071
Number of HSP's successfully gapped in prelim test: 3113
Number of HSP's that attempted gapping in prelim test: 215857
Number of HSP's gapped (non-prelim): 23471
length of query: 136
length of database: 8,064,228,071
effective HSP length: 101
effective length of query: 35
effective length of database: 9,989,415,298
effective search space: 349629535430
effective search space used: 349629535430
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 71 (32.0 bits)