Query psy6353
Match_columns 136
No_of_seqs 134 out of 1169
Neff 10.0
Searched_HMMs 46136
Date Sat Aug 17 00:14:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6353.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6353hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 100.0 2.7E-33 5.9E-38 200.4 13.4 134 2-135 110-249 (346)
2 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 1.4E-31 3E-36 193.1 14.6 134 2-135 6-145 (352)
3 KOG0148|consensus 100.0 9.9E-31 2.1E-35 176.2 12.4 129 2-135 65-214 (321)
4 TIGR01645 half-pint poly-U bin 100.0 3.7E-30 8E-35 193.6 13.6 134 2-135 110-260 (612)
5 KOG0145|consensus 100.0 2.3E-30 5.1E-35 174.0 8.3 134 2-135 44-183 (360)
6 TIGR01628 PABP-1234 polyadenyl 100.0 3.7E-29 8E-34 190.0 13.4 134 2-135 3-143 (562)
7 TIGR01622 SF-CC1 splicing fact 100.0 1.2E-27 2.5E-32 177.9 13.8 133 2-135 92-242 (457)
8 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 3.8E-27 8.3E-32 170.0 15.1 134 2-135 92-325 (352)
9 TIGR01628 PABP-1234 polyadenyl 99.9 8.3E-27 1.8E-31 177.2 13.7 134 2-135 91-233 (562)
10 KOG0144|consensus 99.9 7.2E-28 1.6E-32 171.1 7.3 133 2-134 37-178 (510)
11 KOG0131|consensus 99.9 3.6E-27 7.7E-32 150.9 8.0 134 2-135 12-153 (203)
12 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 6.3E-25 1.4E-29 164.2 14.1 127 2-135 5-148 (481)
13 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 6.2E-25 1.3E-29 164.2 13.9 130 2-135 278-450 (481)
14 KOG0145|consensus 99.9 9.3E-25 2E-29 147.1 10.2 133 2-134 130-333 (360)
15 KOG0123|consensus 99.9 1.2E-24 2.5E-29 157.0 11.0 124 2-136 4-130 (369)
16 KOG0117|consensus 99.9 1.6E-24 3.4E-29 154.7 10.6 126 2-134 86-306 (506)
17 TIGR01648 hnRNP-R-Q heterogene 99.9 2.1E-24 4.5E-29 162.3 11.5 128 2-135 61-196 (578)
18 TIGR01642 U2AF_lg U2 snRNP aux 99.9 6.3E-24 1.4E-28 159.8 12.3 129 2-135 178-351 (509)
19 KOG0127|consensus 99.9 1.1E-23 2.4E-28 153.7 12.6 133 2-134 120-347 (678)
20 TIGR01642 U2AF_lg U2 snRNP aux 99.9 2.9E-23 6.3E-28 156.2 13.1 134 2-135 298-478 (509)
21 KOG0127|consensus 99.9 2.2E-23 4.9E-28 152.1 10.1 134 2-135 8-172 (678)
22 TIGR01648 hnRNP-R-Q heterogene 99.9 3.1E-22 6.8E-27 150.7 13.1 127 2-135 141-283 (578)
23 KOG0124|consensus 99.9 8.5E-23 1.8E-27 143.4 9.2 132 2-133 116-264 (544)
24 KOG0109|consensus 99.9 1.6E-22 3.4E-27 138.0 8.1 118 2-134 5-125 (346)
25 KOG0123|consensus 99.9 4.4E-21 9.6E-26 138.5 11.8 132 2-135 79-222 (369)
26 KOG0110|consensus 99.9 2.2E-21 4.8E-26 145.1 9.7 134 2-135 518-669 (725)
27 TIGR01622 SF-CC1 splicing fact 99.9 1.6E-20 3.4E-25 139.9 13.9 131 2-135 189-424 (457)
28 KOG4205|consensus 99.8 7.1E-21 1.5E-25 133.8 9.4 134 2-136 9-154 (311)
29 KOG0105|consensus 99.8 8.5E-19 1.8E-23 113.1 10.1 127 2-135 9-164 (241)
30 PLN03134 glycine-rich RNA-bind 99.8 1.7E-18 3.6E-23 110.6 9.4 75 2-76 37-116 (144)
31 KOG0144|consensus 99.8 1.3E-18 2.8E-23 124.3 8.5 75 2-76 127-208 (510)
32 KOG4206|consensus 99.8 8.5E-18 1.8E-22 111.4 10.4 127 2-133 12-195 (221)
33 KOG0146|consensus 99.7 1.5E-17 3.3E-22 112.9 10.0 75 2-76 22-103 (371)
34 PF00076 RRM_1: RNA recognitio 99.7 1.5E-17 3.2E-22 93.5 8.4 66 2-67 1-70 (70)
35 TIGR01645 half-pint poly-U bin 99.7 4.9E-17 1.1E-21 123.2 13.7 72 2-73 207-283 (612)
36 KOG0147|consensus 99.7 2.6E-18 5.6E-23 125.8 3.5 123 13-136 196-335 (549)
37 KOG0125|consensus 99.7 9.7E-17 2.1E-21 111.4 6.9 73 2-74 99-174 (376)
38 KOG0122|consensus 99.7 2.9E-16 6.3E-21 105.2 7.7 73 2-74 192-269 (270)
39 KOG0148|consensus 99.6 3.2E-16 6.8E-21 106.5 6.3 102 2-136 9-119 (321)
40 PF14259 RRM_6: RNA recognitio 99.6 2.2E-15 4.7E-20 84.9 8.8 66 2-67 1-70 (70)
41 KOG0147|consensus 99.6 9.6E-16 2.1E-20 112.5 7.9 69 2-70 281-354 (549)
42 COG0724 RNA-binding proteins ( 99.6 1.8E-14 3.8E-19 99.7 11.9 116 2-117 118-262 (306)
43 KOG0107|consensus 99.6 4.5E-15 9.9E-20 95.0 6.5 71 2-75 13-86 (195)
44 KOG0149|consensus 99.6 2.6E-15 5.5E-20 100.2 5.4 70 2-72 15-89 (247)
45 KOG1457|consensus 99.6 2.3E-14 4.9E-19 95.3 9.3 130 2-134 37-261 (284)
46 TIGR01659 sex-lethal sex-letha 99.6 1.5E-14 3.2E-19 104.2 9.0 74 2-75 196-276 (346)
47 KOG4211|consensus 99.6 3.7E-14 8.1E-19 103.1 10.6 133 2-135 13-159 (510)
48 KOG0126|consensus 99.6 5.7E-16 1.2E-20 99.8 0.1 71 1-71 37-112 (219)
49 PLN03120 nucleic acid binding 99.6 2.8E-14 6.1E-19 97.7 8.4 70 2-73 7-79 (260)
50 KOG4212|consensus 99.5 1.8E-13 3.8E-18 98.7 12.1 131 1-131 46-266 (608)
51 PF13893 RRM_5: RNA recognitio 99.5 9E-14 2E-18 75.0 8.0 56 13-71 1-56 (56)
52 PLN03213 repressor of silencin 99.5 2.6E-14 5.7E-19 104.4 7.4 117 2-126 13-146 (759)
53 smart00362 RRM_2 RNA recogniti 99.5 1.2E-13 2.5E-18 77.2 7.9 67 2-68 2-71 (72)
54 KOG0106|consensus 99.5 2E-14 4.4E-19 96.1 5.0 122 2-136 4-148 (216)
55 KOG4207|consensus 99.5 3.2E-14 6.9E-19 93.5 4.4 71 2-72 16-91 (256)
56 smart00360 RRM RNA recognition 99.5 2.4E-13 5.2E-18 75.6 7.1 65 4-68 1-70 (71)
57 PLN03121 nucleic acid binding 99.5 2.5E-13 5.5E-18 91.8 8.1 69 2-72 8-79 (243)
58 PLN03134 glycine-rich RNA-bind 99.5 2.1E-13 4.5E-18 87.1 6.1 58 78-135 32-90 (144)
59 smart00361 RRM_1 RNA recogniti 99.5 5.9E-13 1.3E-17 75.0 7.3 56 13-68 5-69 (70)
60 KOG0111|consensus 99.4 2E-13 4.3E-18 90.7 5.4 74 2-75 13-91 (298)
61 KOG1190|consensus 99.4 3.5E-12 7.6E-17 91.3 12.1 127 2-134 300-465 (492)
62 PF00076 RRM_1: RNA recognitio 99.4 1.6E-13 3.4E-18 76.9 3.8 53 83-135 1-53 (70)
63 KOG0121|consensus 99.4 3.6E-13 7.9E-18 82.3 5.5 71 2-72 39-114 (153)
64 KOG0113|consensus 99.4 7E-13 1.5E-17 91.4 7.4 70 2-71 104-178 (335)
65 cd00590 RRM RRM (RNA recogniti 99.4 2.8E-12 6.2E-17 71.8 8.5 69 2-70 2-74 (74)
66 KOG0114|consensus 99.4 2E-12 4.4E-17 76.4 7.3 73 2-75 21-96 (124)
67 KOG0130|consensus 99.4 9.7E-13 2.1E-17 81.2 6.1 73 2-74 75-152 (170)
68 KOG0108|consensus 99.4 1.2E-12 2.6E-17 96.2 6.9 75 2-76 21-100 (435)
69 KOG0117|consensus 99.4 2.3E-12 5E-17 93.1 7.1 72 2-79 262-336 (506)
70 KOG0124|consensus 99.3 2.4E-11 5.3E-16 86.2 10.2 71 2-72 213-288 (544)
71 KOG0120|consensus 99.3 2.5E-12 5.4E-17 95.3 5.3 134 2-135 292-468 (500)
72 PF14259 RRM_6: RNA recognitio 99.3 3.4E-12 7.4E-17 71.7 4.6 53 83-135 1-53 (70)
73 KOG1548|consensus 99.3 2.9E-11 6.4E-16 85.0 9.8 131 2-135 137-328 (382)
74 KOG0125|consensus 99.3 3.6E-12 7.9E-17 89.0 4.5 80 56-136 72-151 (376)
75 KOG0149|consensus 99.3 4.2E-12 9E-17 85.0 4.5 58 79-136 11-69 (247)
76 KOG0146|consensus 99.3 5.2E-12 1.1E-16 86.2 4.9 75 2-76 288-367 (371)
77 KOG4208|consensus 99.3 2.1E-11 4.6E-16 80.2 6.9 73 2-74 52-130 (214)
78 PLN03120 nucleic acid binding 99.3 1E-11 2.2E-16 85.3 5.7 55 79-135 3-57 (260)
79 PLN03121 nucleic acid binding 99.3 1.3E-11 2.9E-16 83.6 5.6 55 79-135 4-58 (243)
80 KOG0122|consensus 99.2 1.1E-11 2.3E-16 83.5 4.9 57 79-135 188-245 (270)
81 KOG0110|consensus 99.2 2.5E-11 5.4E-16 91.9 6.6 130 2-135 388-574 (725)
82 KOG0131|consensus 99.2 2.6E-11 5.5E-16 78.5 5.0 74 2-75 99-178 (203)
83 KOG4454|consensus 99.2 1.3E-11 2.9E-16 82.0 1.9 116 2-127 12-131 (267)
84 smart00362 RRM_2 RNA recogniti 99.1 1.8E-10 4E-15 64.0 4.8 53 82-135 1-53 (72)
85 KOG4212|consensus 99.1 1.1E-09 2.4E-14 79.5 9.0 68 2-69 218-289 (608)
86 KOG0126|consensus 99.1 9.3E-11 2E-15 75.9 2.7 55 79-133 34-89 (219)
87 KOG0114|consensus 99.0 3.8E-10 8.2E-15 66.8 4.7 56 79-136 17-72 (124)
88 KOG0121|consensus 99.0 2.6E-10 5.7E-15 69.9 3.6 57 79-135 35-92 (153)
89 KOG0129|consensus 99.0 1.1E-08 2.4E-13 75.5 12.0 130 2-132 262-424 (520)
90 KOG0415|consensus 99.0 7.5E-10 1.6E-14 78.4 5.4 72 2-73 242-318 (479)
91 cd00590 RRM RRM (RNA recogniti 99.0 1.1E-09 2.5E-14 61.0 4.9 54 82-135 1-54 (74)
92 KOG4661|consensus 99.0 1.5E-09 3.3E-14 81.2 6.4 73 2-74 408-485 (940)
93 PLN03213 repressor of silencin 99.0 1.2E-09 2.5E-14 80.5 5.4 51 78-131 8-58 (759)
94 KOG0153|consensus 98.9 4.3E-09 9.3E-14 74.3 7.4 68 2-73 231-302 (377)
95 smart00360 RRM RNA recognition 98.9 1.4E-09 3E-14 60.1 4.0 51 85-135 1-52 (71)
96 KOG0109|consensus 98.9 1.8E-09 3.9E-14 74.7 5.2 68 2-75 81-151 (346)
97 KOG4205|consensus 98.9 1.6E-09 3.5E-14 76.8 4.5 106 2-108 100-215 (311)
98 KOG0128|consensus 98.9 2.7E-10 5.8E-15 88.0 0.4 116 2-134 670-790 (881)
99 KOG0533|consensus 98.9 6.3E-09 1.4E-13 71.3 6.8 73 2-74 86-162 (243)
100 KOG0132|consensus 98.9 5.2E-09 1.1E-13 80.4 6.5 71 2-76 424-497 (894)
101 KOG1365|consensus 98.9 8.9E-10 1.9E-14 78.8 1.7 132 3-135 165-338 (508)
102 COG0724 RNA-binding proteins ( 98.8 4.7E-09 1E-13 72.5 5.1 56 80-135 115-171 (306)
103 KOG0113|consensus 98.8 6.9E-09 1.5E-13 72.0 5.5 58 78-135 99-157 (335)
104 KOG0107|consensus 98.8 7.2E-09 1.6E-13 66.9 5.2 53 79-135 9-61 (195)
105 KOG0226|consensus 98.8 1.9E-09 4.2E-14 73.2 2.3 73 2-74 193-270 (290)
106 KOG1456|consensus 98.8 1.5E-07 3.3E-12 67.4 11.8 118 13-134 305-460 (494)
107 KOG0151|consensus 98.7 2.5E-08 5.3E-13 76.2 6.3 72 2-73 177-256 (877)
108 KOG0105|consensus 98.7 1.8E-08 3.9E-13 65.7 4.7 55 79-135 5-59 (241)
109 KOG0116|consensus 98.7 1.7E-08 3.6E-13 74.2 4.9 71 2-73 291-366 (419)
110 PF11608 Limkain-b1: Limkain b 98.7 5.3E-08 1.1E-12 55.7 5.7 64 1-72 4-75 (90)
111 KOG4211|consensus 98.7 9.8E-08 2.1E-12 70.3 8.5 132 2-135 106-335 (510)
112 KOG1456|consensus 98.7 4.5E-07 9.7E-12 65.0 10.7 117 13-136 139-340 (494)
113 KOG1190|consensus 98.6 3.9E-07 8.5E-12 65.9 9.4 126 3-134 154-348 (492)
114 KOG4209|consensus 98.6 7.8E-08 1.7E-12 65.8 5.6 70 2-72 104-178 (231)
115 KOG0108|consensus 98.6 4.4E-08 9.6E-13 72.4 4.2 55 81-135 19-74 (435)
116 KOG0415|consensus 98.6 3E-08 6.6E-13 70.5 3.1 58 78-135 237-295 (479)
117 KOG4660|consensus 98.6 2.1E-08 4.7E-13 74.6 2.4 105 1-109 77-206 (549)
118 KOG2193|consensus 98.6 1E-08 2.2E-13 74.3 0.7 104 2-112 4-112 (584)
119 KOG0130|consensus 98.6 5.3E-08 1.2E-12 60.5 3.5 58 77-134 69-127 (170)
120 KOG4210|consensus 98.6 5.3E-08 1.2E-12 68.7 3.9 131 3-133 92-239 (285)
121 KOG4207|consensus 98.6 7E-08 1.5E-12 64.0 3.7 57 79-135 12-69 (256)
122 KOG0111|consensus 98.5 4.8E-08 1E-12 65.4 2.5 57 78-134 8-65 (298)
123 KOG0153|consensus 98.4 2.1E-07 4.6E-12 65.9 3.9 54 77-135 225-278 (377)
124 KOG0120|consensus 98.4 3.1E-07 6.8E-12 68.6 4.5 126 1-131 177-341 (500)
125 KOG0112|consensus 98.4 2.3E-07 5E-12 72.6 3.9 125 2-133 375-503 (975)
126 PF04059 RRM_2: RNA recognitio 98.4 3.8E-06 8.1E-11 49.9 7.7 71 2-72 4-85 (97)
127 KOG0132|consensus 98.3 4.4E-07 9.6E-12 70.2 3.2 52 80-136 421-472 (894)
128 KOG2314|consensus 98.3 2E-06 4.4E-11 64.6 6.4 68 2-69 61-139 (698)
129 KOG0226|consensus 98.3 5.3E-07 1.1E-11 61.6 2.9 123 13-135 116-246 (290)
130 KOG4208|consensus 98.3 1.8E-06 4E-11 57.2 5.1 61 75-135 44-106 (214)
131 smart00361 RRM_1 RNA recogniti 98.3 8.2E-07 1.8E-11 49.8 3.0 42 94-135 2-51 (70)
132 KOG0116|consensus 98.2 1.7E-06 3.6E-11 63.9 4.6 56 80-135 288-344 (419)
133 PF13893 RRM_5: RNA recognitio 98.2 1E-06 2.3E-11 47.0 2.6 35 97-135 1-35 (56)
134 COG5175 MOT2 Transcriptional r 98.2 5.9E-06 1.3E-10 58.8 6.0 71 2-72 117-201 (480)
135 KOG1365|consensus 98.2 3.6E-05 7.9E-10 55.7 10.0 121 13-134 77-219 (508)
136 KOG1548|consensus 98.1 1.8E-05 3.8E-10 56.4 7.0 60 13-74 293-352 (382)
137 KOG4661|consensus 98.1 5.5E-06 1.2E-10 62.6 4.6 56 79-134 404-460 (940)
138 PF04059 RRM_2: RNA recognitio 98.0 1.1E-05 2.5E-10 47.9 4.2 55 81-135 2-59 (97)
139 KOG4206|consensus 98.0 3.9E-05 8.5E-10 51.7 6.6 68 2-72 149-220 (221)
140 KOG3152|consensus 97.9 5.5E-06 1.2E-10 56.7 1.7 64 2-65 77-157 (278)
141 PF08777 RRM_3: RNA binding mo 97.9 1.9E-05 4.1E-10 47.8 3.3 50 81-135 2-51 (105)
142 KOG4454|consensus 97.7 1.6E-05 3.5E-10 53.4 1.8 54 79-133 8-61 (267)
143 KOG0533|consensus 97.7 4.1E-05 9E-10 52.7 3.7 57 79-135 82-138 (243)
144 KOG0115|consensus 97.7 8.1E-05 1.8E-09 51.1 5.0 80 47-133 5-84 (275)
145 KOG0106|consensus 97.6 4.3E-05 9.3E-10 51.7 2.4 62 2-69 102-166 (216)
146 PF08777 RRM_3: RNA binding mo 97.6 0.0002 4.3E-09 43.3 5.0 52 2-57 4-58 (105)
147 KOG4209|consensus 97.5 0.0001 2.3E-09 50.6 3.6 58 77-134 98-156 (231)
148 KOG1995|consensus 97.5 8.4E-05 1.8E-09 53.2 3.0 74 2-75 69-155 (351)
149 KOG0151|consensus 97.5 0.00011 2.5E-09 56.9 3.6 57 79-135 173-233 (877)
150 KOG4210|consensus 97.4 8.6E-05 1.9E-09 52.6 2.2 72 4-76 190-266 (285)
151 KOG4307|consensus 97.4 0.00039 8.5E-09 54.0 5.7 121 13-134 328-489 (944)
152 KOG0128|consensus 97.4 5.6E-06 1.2E-10 64.8 -4.1 121 13-134 589-722 (881)
153 PF14605 Nup35_RRM_2: Nup53/35 97.4 0.00021 4.5E-09 37.8 3.1 50 81-136 2-51 (53)
154 KOG4676|consensus 97.3 0.00028 6.1E-09 51.3 3.6 114 2-116 10-187 (479)
155 PF05172 Nup35_RRM: Nup53/35/4 97.2 0.0019 4E-08 38.7 6.0 70 2-72 9-90 (100)
156 PF14605 Nup35_RRM_2: Nup53/35 97.2 0.00083 1.8E-08 35.4 4.0 48 2-53 4-53 (53)
157 PF08952 DUF1866: Domain of un 97.2 0.0027 5.8E-08 40.4 6.4 54 13-73 53-106 (146)
158 KOG4660|consensus 97.1 0.00026 5.6E-09 53.4 1.9 59 72-134 67-125 (549)
159 KOG1457|consensus 97.1 0.00073 1.6E-08 45.8 3.6 58 2-61 213-273 (284)
160 KOG1996|consensus 97.1 0.0021 4.5E-08 45.3 5.9 59 13-71 303-364 (378)
161 KOG2202|consensus 97.1 0.00025 5.3E-09 48.8 1.3 55 18-72 91-146 (260)
162 KOG1855|consensus 97.0 0.00087 1.9E-08 49.3 3.3 58 1-58 233-308 (484)
163 PF07292 NID: Nmi/IFP 35 domai 96.9 0.01 2.2E-07 34.7 7.0 63 39-101 1-73 (88)
164 KOG3152|consensus 96.8 0.00032 7E-09 48.3 0.4 40 79-118 73-112 (278)
165 KOG1855|consensus 96.8 0.0038 8.2E-08 46.1 5.3 58 78-135 229-300 (484)
166 KOG4307|consensus 96.7 0.005 1.1E-07 48.2 6.0 68 2-69 870-942 (944)
167 KOG4849|consensus 96.7 0.0013 2.9E-08 47.3 2.3 67 2-68 83-156 (498)
168 KOG4676|consensus 96.3 0.0046 1E-07 45.2 3.2 55 80-134 7-65 (479)
169 KOG2068|consensus 96.2 0.0015 3.2E-08 46.7 0.5 73 2-74 80-163 (327)
170 PF15023 DUF4523: Protein of u 96.1 0.031 6.6E-07 35.6 6.0 55 13-73 107-161 (166)
171 KOG0115|consensus 96.0 0.0087 1.9E-07 41.4 3.4 55 2-56 34-92 (275)
172 PF03467 Smg4_UPF3: Smg-4/UPF3 95.8 0.011 2.4E-07 39.1 3.0 56 79-134 6-68 (176)
173 PF04847 Calcipressin: Calcipr 95.7 0.033 7.1E-07 37.1 5.2 58 13-74 12-71 (184)
174 KOG0129|consensus 95.7 0.014 3E-07 44.1 3.7 55 79-134 258-319 (520)
175 COG5175 MOT2 Transcriptional r 95.7 0.011 2.4E-07 42.6 3.0 57 80-136 114-180 (480)
176 KOG2135|consensus 95.7 0.0087 1.9E-07 44.8 2.5 58 13-75 390-447 (526)
177 PF11608 Limkain-b1: Limkain b 95.5 0.0095 2.1E-07 34.4 1.6 47 81-136 3-54 (90)
178 KOG2416|consensus 95.4 0.0099 2.1E-07 45.7 2.0 66 2-71 447-519 (718)
179 PF08675 RNA_bind: RNA binding 95.0 0.081 1.8E-06 30.5 4.5 46 82-134 10-55 (87)
180 PF07576 BRAP2: BRCA1-associat 95.0 0.16 3.5E-06 30.9 6.0 42 22-63 40-81 (110)
181 KOG0112|consensus 94.5 0.014 3.1E-07 46.8 0.8 57 77-133 369-425 (975)
182 PF08675 RNA_bind: RNA binding 94.1 0.29 6.2E-06 28.3 5.3 45 7-57 16-63 (87)
183 KOG4574|consensus 94.0 0.038 8.2E-07 44.3 2.2 69 3-75 302-375 (1007)
184 KOG1995|consensus 93.9 0.079 1.7E-06 38.4 3.5 56 78-133 64-128 (351)
185 KOG2314|consensus 93.9 0.072 1.6E-06 41.0 3.3 58 78-135 56-119 (698)
186 PF10309 DUF2414: Protein of u 93.8 0.29 6.3E-06 26.6 4.8 49 2-56 8-62 (62)
187 KOG4285|consensus 93.3 0.31 6.8E-06 34.8 5.4 53 13-70 213-266 (350)
188 PF14111 DUF4283: Domain of un 93.2 0.074 1.6E-06 33.9 2.2 79 35-114 54-139 (153)
189 KOG0804|consensus 92.5 0.25 5.4E-06 37.1 4.3 63 1-63 76-142 (493)
190 PF11767 SET_assoc: Histone ly 91.9 1.2 2.7E-05 24.5 5.6 58 4-68 7-65 (66)
191 KOG2591|consensus 91.3 1.1 2.4E-05 34.8 6.6 74 50-135 151-226 (684)
192 PF03467 Smg4_UPF3: Smg-4/UPF3 91.2 0.95 2.1E-05 30.0 5.6 61 2-62 10-81 (176)
193 PF10309 DUF2414: Protein of u 90.4 0.63 1.4E-05 25.3 3.5 51 79-136 4-57 (62)
194 KOG2202|consensus 89.9 0.031 6.7E-07 38.7 -2.3 41 95-135 83-124 (260)
195 PF03880 DbpA: DbpA RNA bindin 89.7 0.57 1.2E-05 26.2 3.1 43 22-71 32-74 (74)
196 KOG0804|consensus 89.1 1 2.3E-05 34.0 4.8 56 79-135 73-129 (493)
197 KOG2068|consensus 87.1 0.45 9.8E-06 34.4 1.9 56 80-135 77-139 (327)
198 PF10567 Nab6_mRNP_bdg: RNA-re 84.8 1.1 2.4E-05 32.0 2.9 55 79-133 14-76 (309)
199 PF15513 DUF4651: Domain of un 84.6 2 4.3E-05 23.3 3.2 26 95-120 9-34 (62)
200 KOG4849|consensus 83.8 0.33 7.3E-06 35.4 0.0 56 80-135 80-138 (498)
201 KOG4019|consensus 83.5 1.1 2.4E-05 29.8 2.3 111 13-128 32-165 (193)
202 PF05172 Nup35_RRM: Nup53/35/4 82.8 1.1 2.4E-05 26.8 2.0 56 80-136 6-69 (100)
203 KOG1996|consensus 82.8 1.8 3.9E-05 31.1 3.2 41 94-134 300-342 (378)
204 COG5353 Uncharacterized protei 81.5 7.4 0.00016 25.1 5.3 57 80-136 87-157 (161)
205 PF07576 BRAP2: BRCA1-associat 80.0 7.9 0.00017 23.6 5.0 56 79-135 11-68 (110)
206 PF02714 DUF221: Domain of unk 79.2 5.1 0.00011 28.9 4.7 55 39-101 1-55 (325)
207 KOG2416|consensus 74.3 1.1 2.3E-05 35.1 0.2 53 77-134 441-494 (718)
208 KOG2253|consensus 72.9 2.1 4.6E-05 33.8 1.4 61 2-69 43-106 (668)
209 PF03468 XS: XS domain; Inter 72.7 7.3 0.00016 24.0 3.5 53 1-54 10-75 (116)
210 KOG2591|consensus 72.2 8.4 0.00018 30.2 4.3 60 4-68 180-246 (684)
211 KOG4410|consensus 69.3 18 0.00039 26.1 5.2 50 81-134 331-380 (396)
212 KOG2193|consensus 69.1 4.2 9E-05 30.8 2.2 49 81-134 2-50 (584)
213 PF15023 DUF4523: Protein of u 67.8 12 0.00026 24.1 3.7 51 77-133 83-137 (166)
214 PF10567 Nab6_mRNP_bdg: RNA-re 67.8 9.9 0.00021 27.4 3.7 68 4-71 20-105 (309)
215 CHL00030 rpl23 ribosomal prote 67.2 20 0.00044 21.1 4.5 53 82-134 20-85 (93)
216 PRK05738 rplW 50S ribosomal pr 66.7 24 0.00052 20.7 4.8 53 82-134 21-86 (92)
217 PF03439 Spt5-NGN: Early trans 61.5 19 0.00041 20.6 3.6 35 22-59 33-67 (84)
218 KOG4008|consensus 59.3 7 0.00015 27.2 1.7 32 78-109 38-69 (261)
219 TIGR03636 L23_arch archaeal ri 56.2 20 0.00044 20.3 3.0 52 82-135 15-68 (77)
220 PRK14548 50S ribosomal protein 55.9 19 0.00042 20.8 2.9 51 83-135 23-75 (84)
221 PF07876 Dabb: Stress responsi 54.4 29 0.00064 19.8 3.7 49 87-135 8-68 (97)
222 TIGR01873 cas_CT1978 CRISPR-as 48.2 52 0.0011 19.2 3.9 43 2-45 28-74 (87)
223 PF09707 Cas_Cas2CT1978: CRISP 47.8 53 0.0011 19.1 3.9 43 2-44 28-72 (86)
224 KOG2891|consensus 45.8 16 0.00035 26.2 1.8 25 6-30 171-195 (445)
225 KOG2253|consensus 45.6 7.3 0.00016 31.0 0.1 48 78-133 38-85 (668)
226 PF14893 PNMA: PNMA 45.3 22 0.00047 26.2 2.5 51 79-130 17-71 (331)
227 KOG4213|consensus 44.1 55 0.0012 22.0 3.9 35 21-55 132-169 (205)
228 KOG2295|consensus 43.0 4.1 8.9E-05 31.8 -1.5 64 2-65 234-302 (648)
229 PRK11558 putative ssRNA endonu 42.6 64 0.0014 19.3 3.8 44 2-46 30-76 (97)
230 KOG2135|consensus 42.0 14 0.0003 28.5 1.1 49 81-134 373-422 (526)
231 PF05166 YcgL: YcgL domain; I 41.7 57 0.0012 18.4 3.3 54 1-60 13-68 (74)
232 PF11823 DUF3343: Protein of u 41.6 33 0.00072 18.9 2.4 62 37-105 2-63 (73)
233 PRK08559 nusG transcription an 41.1 50 0.0011 21.2 3.5 33 23-58 36-68 (153)
234 KOG2891|consensus 40.9 38 0.00083 24.4 3.1 35 79-113 148-194 (445)
235 PF00276 Ribosomal_L23: Riboso 40.9 56 0.0012 19.0 3.4 51 83-133 22-85 (91)
236 PF13046 DUF3906: Protein of u 40.2 60 0.0013 17.7 3.1 33 93-126 31-63 (64)
237 PHA01632 hypothetical protein 38.6 26 0.00056 18.6 1.5 21 83-103 19-39 (64)
238 PF04026 SpoVG: SpoVG; InterP 36.3 86 0.0019 18.1 3.6 24 22-45 2-27 (84)
239 COG5507 Uncharacterized conser 36.3 61 0.0013 19.4 3.0 23 34-56 64-86 (117)
240 PRK01178 rps24e 30S ribosomal 36.1 78 0.0017 18.9 3.5 38 14-52 38-81 (99)
241 PF14191 YodL: YodL-like 33.3 54 0.0012 19.7 2.5 22 1-22 40-61 (103)
242 PRK14998 cold shock-like prote 32.0 26 0.00057 19.6 0.9 12 34-45 11-22 (73)
243 PRK09937 stationary phase/star 31.7 28 0.0006 19.5 1.0 12 34-45 11-22 (74)
244 PRK13259 regulatory protein Sp 31.3 1.1E+02 0.0023 18.2 3.4 24 22-45 2-27 (94)
245 COG5193 LHP1 La protein, small 30.9 14 0.00031 27.8 -0.3 56 80-135 174-240 (438)
246 PF07530 PRE_C2HC: Associated 30.8 89 0.0019 17.1 2.9 59 13-74 4-65 (68)
247 PRK15464 cold shock-like prote 30.6 26 0.00056 19.4 0.8 12 34-45 14-25 (70)
248 PTZ00191 60S ribosomal protein 30.6 96 0.0021 20.0 3.4 50 82-133 83-134 (145)
249 PRK06737 acetolactate synthase 30.2 1.1E+02 0.0024 17.3 7.1 57 2-58 7-66 (76)
250 PF11411 DNA_ligase_IV: DNA li 30.2 35 0.00077 16.3 1.1 15 91-105 20-34 (36)
251 PRK10943 cold shock-like prote 30.0 28 0.0006 19.1 0.8 12 34-45 13-24 (69)
252 PRK15463 cold shock-like prote 29.8 29 0.00064 19.2 0.9 12 34-45 14-25 (70)
253 PRK09507 cspE cold shock prote 29.0 30 0.00066 19.0 0.9 12 34-45 13-24 (69)
254 PF08206 OB_RNB: Ribonuclease 28.9 38 0.00081 17.8 1.2 12 34-45 6-17 (58)
255 TIGR02381 cspD cold shock doma 28.9 33 0.00072 18.7 1.0 12 34-45 11-22 (68)
256 PF12829 Mhr1: Transcriptional 28.3 1.1E+02 0.0025 18.0 3.2 21 36-56 51-71 (91)
257 COG0445 GidA Flavin-dependent 26.7 3.5E+02 0.0075 22.0 7.3 79 37-115 237-336 (621)
258 TIGR02542 B_forsyth_147 Bacter 26.2 89 0.0019 19.4 2.6 27 4-30 8-35 (145)
259 PRK09890 cold shock protein Cs 26.1 36 0.00077 18.8 0.8 12 34-45 14-25 (70)
260 cd00027 BRCT Breast Cancer Sup 25.3 1E+02 0.0022 15.6 2.6 26 81-106 2-27 (72)
261 KOG0156|consensus 25.0 1.8E+02 0.0039 22.8 4.6 46 13-66 52-97 (489)
262 PRK10354 RNA chaperone/anti-te 24.7 39 0.00085 18.6 0.8 12 34-45 14-25 (70)
263 KOG1295|consensus 24.2 72 0.0016 24.0 2.3 55 80-134 7-65 (376)
264 KOG1888|consensus 24.1 1.8E+02 0.004 24.4 4.6 55 66-120 295-352 (868)
265 smart00596 PRE_C2HC PRE_C2HC d 23.6 1.1E+02 0.0024 17.0 2.4 57 13-72 4-63 (69)
266 KOG2318|consensus 23.6 1.1E+02 0.0024 24.5 3.2 27 38-64 270-296 (650)
267 KOG4574|consensus 23.0 23 0.00049 29.5 -0.5 47 83-134 301-347 (1007)
268 PF10915 DUF2709: Protein of u 22.8 2.6E+02 0.0056 19.1 6.0 63 41-106 47-118 (238)
269 KOG0643|consensus 22.3 97 0.0021 22.4 2.5 36 93-128 276-313 (327)
270 PF05573 NosL: NosL; InterPro 22.2 92 0.002 19.9 2.3 24 35-58 113-136 (149)
271 cd06498 ACD_alphaB-crystallin_ 22.1 70 0.0015 18.2 1.6 28 86-114 56-83 (84)
272 KOG3465|consensus 22.0 1.2E+02 0.0027 17.5 2.5 30 1-30 1-31 (86)
273 PF10281 Ish1: Putative stress 21.5 70 0.0015 15.1 1.3 17 91-107 3-19 (38)
274 COG0030 KsgA Dimethyladenosine 21.5 1.7E+02 0.0036 20.9 3.6 37 80-116 95-131 (259)
275 COG1278 CspC Cold shock protei 21.4 39 0.00084 18.7 0.4 38 34-72 11-54 (67)
276 PF13689 DUF4154: Domain of un 21.2 2.2E+02 0.0049 17.8 8.0 50 39-89 29-78 (145)
277 PF15407 Spo7_2_N: Sporulation 21.0 9 0.00019 21.2 -2.2 28 71-98 18-45 (67)
278 PTZ00338 dimethyladenosine tra 20.7 3.4E+02 0.0073 19.6 5.6 35 81-115 102-136 (294)
279 PF12091 DUF3567: Protein of u 20.6 76 0.0016 18.4 1.5 57 34-105 6-75 (85)
280 KOG4365|consensus 20.6 68 0.0015 24.8 1.6 49 82-130 5-54 (572)
281 cd04458 CSP_CDS Cold-Shock Pro 20.4 60 0.0013 17.2 1.0 11 35-45 11-21 (65)
282 PF10141 ssDNA-exonuc_C: Singl 20.3 2.2E+02 0.0048 19.0 3.9 51 78-134 50-100 (195)
283 PF06014 DUF910: Bacterial pro 20.2 75 0.0016 17.3 1.3 18 93-110 3-20 (62)
284 cd06257 DnaJ DnaJ domain or J- 20.1 1.1E+02 0.0024 15.1 2.0 20 85-104 5-24 (55)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=2.7e-33 Score=200.43 Aligned_cols=134 Identities=34% Similarity=0.633 Sum_probs=125.8
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~ 76 (136)
|||+|||..+| |+++|+.||+|.+|++++ .+++++|||||+|.+.++|+.|+..||+..+.+++|+|.++.+...
T Consensus 110 LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~p~~~ 189 (346)
T TIGR01659 110 LIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYARPGGE 189 (346)
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeeccccccc
Confidence 89999999999 999999999999999988 7899999999999999999999999999999999999999988766
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCc-cceEeecCcccccc
Q psy6353 77 SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATEN-GKYYSGLGGRERLR 135 (136)
Q Consensus 77 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~-~~~fv~f~~~e~~~ 135 (136)
.....+|||.|||..+|+++|+++|++||.|..+++++|..++.. +.+||+|.+.|+|.
T Consensus 190 ~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~ 249 (346)
T TIGR01659 190 SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQ 249 (346)
T ss_pred ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHH
Confidence 667789999999999999999999999999999999999988777 55999999999875
No 2
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.98 E-value=1.4e-31 Score=193.06 Aligned_cols=134 Identities=59% Similarity=0.893 Sum_probs=125.8
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~ 76 (136)
|||+|||..++ |+++|++||+|.+|++++ .+|+++|||||+|.+.++|+.|+..|||..+.|++|++.++.+...
T Consensus 6 l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~~~~ 85 (352)
T TIGR01661 6 LIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARPSSD 85 (352)
T ss_pred EEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeeccccc
Confidence 79999999998 999999999999999998 6899999999999999999999999999999999999999998877
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCc-cceEeecCcccccc
Q psy6353 77 SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATEN-GKYYSGLGGRERLR 135 (136)
Q Consensus 77 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~-~~~fv~f~~~e~~~ 135 (136)
.....+|||+|||..+++++|+++|++||.|..+.++.+..++.. +.+||+|.+.|+|.
T Consensus 86 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~ 145 (352)
T TIGR01661 86 SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEAD 145 (352)
T ss_pred ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHH
Confidence 777889999999999999999999999999999999999877655 56999999999875
No 3
>KOG0148|consensus
Probab=99.97 E-value=9.9e-31 Score=176.23 Aligned_cols=129 Identities=26% Similarity=0.464 Sum_probs=119.6
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~ 76 (136)
|||+.|..+++ |++.|.+||+|.++++++ .+++|||||||.|.+.++|+.||..|||..|++|.|+..|+.-+..
T Consensus 65 vfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp~ 144 (321)
T KOG0148|consen 65 VFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKPS 144 (321)
T ss_pred EEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccCcc
Confidence 78999999998 999999999999999999 8999999999999999999999999999999999999999865442
Q ss_pred ----------------CCCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 77 ----------------SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 77 ----------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
+.+.+++|++|++..+|+++|++.|++||+|..|++.+++ +++||+|++.|.|-
T Consensus 145 e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~q-----GYaFVrF~tkEaAa 214 (321)
T KOG0148|consen 145 EMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQ-----GYAFVRFETKEAAA 214 (321)
T ss_pred ccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEeccc-----ceEEEEecchhhHH
Confidence 2467899999999999999999999999999999999875 78999999999874
No 4
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.97 E-value=3.7e-30 Score=193.58 Aligned_cols=134 Identities=20% Similarity=0.344 Sum_probs=120.3
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~ 76 (136)
|||+|||..++ |+++|++||+|.+|.++. .+|+++|||||+|.+.++|+.|+..+||..+.|+.|++.+......
T Consensus 110 LfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~~~p~ 189 (612)
T TIGR01645 110 VYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNMPQ 189 (612)
T ss_pred EEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccccccc
Confidence 79999999998 999999999999999988 7899999999999999999999999999999999999976442211
Q ss_pred -----------CCCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCc-cceEeecCcccccc
Q psy6353 77 -----------SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATEN-GKYYSGLGGRERLR 135 (136)
Q Consensus 77 -----------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~-~~~fv~f~~~e~~~ 135 (136)
.....+|||+|||+++++++|+++|+.||.|.++++.+|+.++.+ |++||+|.+.|++.
T Consensus 190 a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~ 260 (612)
T TIGR01645 190 AQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQS 260 (612)
T ss_pred cccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHH
Confidence 123478999999999999999999999999999999999988866 56999999999874
No 5
>KOG0145|consensus
Probab=99.97 E-value=2.3e-30 Score=174.02 Aligned_cols=134 Identities=57% Similarity=0.830 Sum_probs=127.5
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~ 76 (136)
|.|..||..+| ++.+|+..|+|++|++++ .+|+|-|||||.|.++++|++|++.+||..+..+.|+|.+++|...
T Consensus 44 LIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARPSs~ 123 (360)
T KOG0145|consen 44 LIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARPSSD 123 (360)
T ss_pred eeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEeccCChh
Confidence 45678999998 899999999999999999 8999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccc-eEeecCcccccc
Q psy6353 77 SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGK-YYSGLGGRERLR 135 (136)
Q Consensus 77 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~-~fv~f~~~e~~~ 135 (136)
...+.+|||++||..+|..+|+++|++||.|..-+|..|.-+|.+++ +|++|+.++||.
T Consensus 124 ~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe 183 (360)
T KOG0145|consen 124 SIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAE 183 (360)
T ss_pred hhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHH
Confidence 99999999999999999999999999999999999999998888865 999999999875
No 6
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.96 E-value=3.7e-29 Score=189.99 Aligned_cols=134 Identities=26% Similarity=0.421 Sum_probs=121.4
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCC-
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSS- 75 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~- 75 (136)
|||+|||..+| |+++|++||+|.+|++++ .+++++|||||+|.+.++|++|+..+|+..+.|++|+|.|+....
T Consensus 3 l~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~~ 82 (562)
T TIGR01628 3 LYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDPS 82 (562)
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccccccc
Confidence 89999999999 999999999999999999 679999999999999999999999999999999999999875332
Q ss_pred -CCCCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 76 -ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 76 -~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
......+|||+|||.++++++|+++|+.||.|.+|++..+..+..++.+||+|.+.|+|.
T Consensus 83 ~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~ 143 (562)
T TIGR01628 83 LRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAK 143 (562)
T ss_pred ccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHH
Confidence 223456899999999999999999999999999999999976656678999999999875
No 7
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.95 E-value=1.2e-27 Score=177.91 Aligned_cols=133 Identities=20% Similarity=0.266 Sum_probs=119.1
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~ 76 (136)
|||+|||..++ |+++|++||+|.+|.++. .++.++|||||+|.+.++|++|+. ++|..+.|++|.+..+.....
T Consensus 92 l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~~~~~~ 170 (457)
T TIGR01622 92 VFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSSQAEKN 170 (457)
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeecchhhh
Confidence 89999999998 999999999999999998 789999999999999999999997 899999999999987543221
Q ss_pred ------------CCCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCc-cceEeecCcccccc
Q psy6353 77 ------------SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATEN-GKYYSGLGGRERLR 135 (136)
Q Consensus 77 ------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~-~~~fv~f~~~e~~~ 135 (136)
.....+|||+|||..+++++|+++|++||.|..|.++.+..+|.. +.|||+|.+.|+|.
T Consensus 171 ~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~ 242 (457)
T TIGR01622 171 RAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAK 242 (457)
T ss_pred hhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHH
Confidence 122478999999999999999999999999999999999988666 56999999999875
No 8
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.95 E-value=3.8e-27 Score=169.97 Aligned_cols=134 Identities=25% Similarity=0.408 Sum_probs=115.7
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCC--ceEEEEeeCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQN--KTIKVSYARPS 74 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g--~~l~v~~~~~~ 74 (136)
|||+|||..++ |+++|++||.+..+.++. .++.++|||||+|.+.++|+.|++.|||..+.| .++.+.++...
T Consensus 92 l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~~~ 171 (352)
T TIGR01661 92 LYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFANNP 171 (352)
T ss_pred EEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCCC
Confidence 89999999998 999999999999999888 578899999999999999999999999988876 56777765422
Q ss_pred CC------------------------------------------------------------------------------
Q psy6353 75 SE------------------------------------------------------------------------------ 76 (136)
Q Consensus 75 ~~------------------------------------------------------------------------------ 76 (136)
..
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (352)
T TIGR01661 172 SSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPPATDG 251 (352)
T ss_pred CcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCccccc
Confidence 20
Q ss_pred --------------CCCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCc-cceEeecCcccccc
Q psy6353 77 --------------SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATEN-GKYYSGLGGRERLR 135 (136)
Q Consensus 77 --------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~-~~~fv~f~~~e~~~ 135 (136)
...+.+|||+|||+++++++|+++|++||.|.+++|++|+.++.+ |+|||+|.+.|+|.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~ 325 (352)
T TIGR01661 252 QTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAA 325 (352)
T ss_pred cccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHH
Confidence 001225999999999999999999999999999999999977777 55999999999874
No 9
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.95 E-value=8.3e-27 Score=177.17 Aligned_cols=134 Identities=25% Similarity=0.427 Sum_probs=120.9
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc-cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI-STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSES 77 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~-~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~~ 77 (136)
|||+|||.+++ |+++|++||.|.+|+++. .+|+++|||||+|.+.++|+.|+.++||..+.++.+.+....++.+.
T Consensus 91 vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~~~~~ 170 (562)
T TIGR01628 91 IFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIKKHER 170 (562)
T ss_pred eEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEecccccccc
Confidence 79999999998 999999999999999998 88899999999999999999999999999999999999765544332
Q ss_pred -----CCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 78 -----IKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 78 -----~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
...++|||+|||.++|+++|+++|++||.|.++.+..+..+...+.+||+|.+.|+|.
T Consensus 171 ~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~ 233 (562)
T TIGR01628 171 EAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAA 233 (562)
T ss_pred ccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHH
Confidence 3457899999999999999999999999999999999986666677999999999875
No 10
>KOG0144|consensus
Probab=99.95 E-value=7.2e-28 Score=171.14 Aligned_cols=133 Identities=24% Similarity=0.381 Sum_probs=121.2
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcC-ceeCC--ceEEEEeeCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNG-LRLQN--KTIKVSYARP 73 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~-~~~~g--~~l~v~~~~~ 73 (136)
+||+-+|...+ |+++|++||.|.+|.+++ .+++++|||||.|.+.++|.+|+.+||. +++.| .++.+++++.
T Consensus 37 lfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~Ad~ 116 (510)
T KOG0144|consen 37 LFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKYADG 116 (510)
T ss_pred heeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecccch
Confidence 68999999888 999999999999999999 8999999999999999999999999987 55654 6889999886
Q ss_pred CCCC-CCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCccccc
Q psy6353 74 SSES-IKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERL 134 (136)
Q Consensus 74 ~~~~-~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~ 134 (136)
..+. ...++|||+-|+..+||.+++++|++||.|++|.|.+|...-.+|++||.|.++|-|
T Consensus 117 E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A 178 (510)
T KOG0144|consen 117 ERERIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMA 178 (510)
T ss_pred hhhccccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHH
Confidence 6543 347899999999999999999999999999999999999999999999999999754
No 11
>KOG0131|consensus
Probab=99.94 E-value=3.6e-27 Score=150.92 Aligned_cols=134 Identities=24% Similarity=0.327 Sum_probs=121.1
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCC-C
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPS-S 75 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~-~ 75 (136)
||++|||..++ |.++|-+.|+|.++.+++ .+...+||||++|.++++|+.|++-||...+.|++|++..+... .
T Consensus 12 iyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas~~~~ 91 (203)
T KOG0131|consen 12 LYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKASAHQK 91 (203)
T ss_pred EEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecccccc
Confidence 79999999998 999999999999999999 77789999999999999999999999999999999999877632 2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhcCCCceEE-EEEEeCCCCCCcc-ceEeecCcccccc
Q psy6353 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIIT-SRILCDNLATENG-KYYSGLGGRERLR 135 (136)
Q Consensus 76 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~-~~i~~~~~~~~~~-~~fv~f~~~e~~~ 135 (136)
+...+.++||+||.+.+++..|.+.|+.||++.. .++++++++|..+ ++|+.|++.|..+
T Consensus 92 nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd 153 (203)
T KOG0131|consen 92 NLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASD 153 (203)
T ss_pred cccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHH
Confidence 3456789999999999999999999999999876 6999999988885 6999999988754
No 12
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.93 E-value=6.3e-25 Score=164.15 Aligned_cols=127 Identities=13% Similarity=0.163 Sum_probs=110.1
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHH--cCceeCCceEEEEeeCCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTL--NGLRLQNKTIKVSYARPSSE 76 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~--~~~~~~g~~l~v~~~~~~~~ 76 (136)
|||+|||..++ |+++|++||+|.++.+++ +||||||+|.+.++|+.|++.+ ++..+.|++|.|.++.++..
T Consensus 5 v~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~----~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~~~ 80 (481)
T TIGR01649 5 VHVRNLPQDVVEADLVEALIPFGPVSYVMMLP----GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQEI 80 (481)
T ss_pred EEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEC----CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCccc
Confidence 89999999998 999999999999999885 6789999999999999999864 78999999999999864321
Q ss_pred C------------CCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 77 S------------IKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 77 ~------------~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
. ....+|+|.||+..+|+++|+++|++||.|..|.+.++..+ +.|||+|.+.|+|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~~---~~afVef~~~~~A~ 148 (481)
T TIGR01649 81 KRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNNV---FQALVEFESVNSAQ 148 (481)
T ss_pred ccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCCc---eEEEEEECCHHHHH
Confidence 1 11237999999999999999999999999999999886532 46999999999875
No 13
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.93 E-value=6.2e-25 Score=164.18 Aligned_cols=130 Identities=17% Similarity=0.246 Sum_probs=110.9
Q ss_pred eeecCCCh-hhh---HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCC-
Q psy6353 2 VYQTLLNK-LFT---YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE- 76 (136)
Q Consensus 2 v~v~nl~~-~~~---l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~- 76 (136)
|||+|||. .++ |+++|++||.|.+|++++ ..+|+|||+|.+.++|+.|+..|||..+.|++|+|.+++....
T Consensus 278 l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~---~~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~~~ 354 (481)
T TIGR01649 278 LMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMK---NKKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQNVQ 354 (481)
T ss_pred EEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEe---CCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccccccc
Confidence 89999997 576 999999999999999987 3479999999999999999999999999999999987643210
Q ss_pred ------------------------------------CCCCceEEEcCCCCCCCHHHHHHhhcCCCc--eEEEEEEeCCCC
Q psy6353 77 ------------------------------------SIKGANLYVSGLPKHMSQQELESLFSPYGR--IITSRILCDNLA 118 (136)
Q Consensus 77 ------------------------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~--v~~~~i~~~~~~ 118 (136)
...+.+|||+|||.++++++|+++|++||. |..+++..+. +
T Consensus 355 ~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~~-~ 433 (481)
T TIGR01649 355 PPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFPKD-N 433 (481)
T ss_pred CCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEecCC-C
Confidence 012468999999999999999999999998 7888887544 3
Q ss_pred CCccceEeecCcccccc
Q psy6353 119 TENGKYYSGLGGRERLR 135 (136)
Q Consensus 119 ~~~~~~fv~f~~~e~~~ 135 (136)
+.++.|||+|++.|+|.
T Consensus 434 ~~~~~gfVeF~~~e~A~ 450 (481)
T TIGR01649 434 ERSKMGLLEWESVEDAV 450 (481)
T ss_pred CcceeEEEEcCCHHHHH
Confidence 45678999999999875
No 14
>KOG0145|consensus
Probab=99.92 E-value=9.3e-25 Score=147.14 Aligned_cols=133 Identities=24% Similarity=0.383 Sum_probs=117.4
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCC--ceEEEEeeCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQN--KTIKVSYARPS 74 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g--~~l~v~~~~~~ 74 (136)
|||+.||+.+| |+++|++||.|..-++.. .+|.++|.|||.|...++|+.|+..+||..-.| .+|.|+++...
T Consensus 130 LYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannP 209 (360)
T KOG0145|consen 130 LYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNP 209 (360)
T ss_pred eEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCc
Confidence 79999999999 899999999987776666 789999999999999999999999999988765 57888876533
Q ss_pred CC---------------------------------------------------------------CCCCceEEEcCCCCC
Q psy6353 75 SE---------------------------------------------------------------SIKGANLYVSGLPKH 91 (136)
Q Consensus 75 ~~---------------------------------------------------------------~~~~~~l~v~nl~~~ 91 (136)
.. ...++.|||-||.++
T Consensus 210 sq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYNLspd 289 (360)
T KOG0145|consen 210 SQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYNLSPD 289 (360)
T ss_pred ccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEecCCC
Confidence 22 024579999999999
Q ss_pred CCHHHHHHhhcCCCceEEEEEEeCCCCCCccc-eEeecCccccc
Q psy6353 92 MSQQELESLFSPYGRIITSRILCDNLATENGK-YYSGLGGRERL 134 (136)
Q Consensus 92 ~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~-~fv~f~~~e~~ 134 (136)
++|.-|+++|.+||.|..+++++|.+++++++ +||.|.+.+||
T Consensus 290 ~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEA 333 (360)
T KOG0145|consen 290 ADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEA 333 (360)
T ss_pred chHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHH
Confidence 99999999999999999999999999999955 89999999886
No 15
>KOG0123|consensus
Probab=99.92 E-value=1.2e-24 Score=156.97 Aligned_cols=124 Identities=21% Similarity=0.405 Sum_probs=110.6
Q ss_pred eeecCCChhhh--HHHHhccCCCeeEEEEEc-cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCCCC
Q psy6353 2 VYQTLLNKLFT--YEKVHLGFSDAEICVFLI-STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESI 78 (136)
Q Consensus 2 v~v~nl~~~~~--l~~~f~~~G~v~~~~~~~-~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~~~ 78 (136)
|||+ |.-.+ |.+.|+++|++.++++++ . + +-|||||.|.++.+|++|+.++|...+.|+++++.|+...+.
T Consensus 4 l~vg--~~v~e~~l~~~f~~~~~v~s~rvc~d~-t-slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~~-- 77 (369)
T KOG0123|consen 4 LYVG--PDVTEAMLFDKFSPAGPVLSIRVCRDA-T-SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDPS-- 77 (369)
T ss_pred eecC--CcCChHHHHHHhcccCCceeEEEeecC-C-ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCCc--
Confidence 6777 33333 999999999999999999 7 6 999999999999999999999999999999999999875433
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCccccccC
Q psy6353 79 KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLRR 136 (136)
Q Consensus 79 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~~ 136 (136)
.+||.||+++++..+|.++|+.||+|.+|++.++.++ .+++||+|+++|+|++
T Consensus 78 ---~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g--~kg~FV~f~~e~~a~~ 130 (369)
T KOG0123|consen 78 ---LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG--SKGYFVQFESEESAKK 130 (369)
T ss_pred ---eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC--ceeeEEEeCCHHHHHH
Confidence 2999999999999999999999999999999999866 4555999999999863
No 16
>KOG0117|consensus
Probab=99.92 E-value=1.6e-24 Score=154.72 Aligned_cols=126 Identities=20% Similarity=0.317 Sum_probs=111.8
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeC-CceEEEEeeCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQ-NKTIKVSYARPSS 75 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~-g~~l~v~~~~~~~ 75 (136)
|||+.||..+. |..+|++.|+|-+++++. .+|.++|||||+|.+.+.|+.|++.||+++|. |+.|.|+.+..+.
T Consensus 86 VfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Svan~ 165 (506)
T KOG0117|consen 86 VFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSVANC 165 (506)
T ss_pred EEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEeeecc
Confidence 79999999887 999999999999999999 89999999999999999999999999999985 8999987655322
Q ss_pred C----------C--------------------------------------------------------------------
Q psy6353 76 E----------S-------------------------------------------------------------------- 77 (136)
Q Consensus 76 ~----------~-------------------------------------------------------------------- 77 (136)
+ .
T Consensus 166 RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWA 245 (506)
T KOG0117|consen 166 RLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWA 245 (506)
T ss_pred eeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcceeecc
Confidence 1 0
Q ss_pred -----------CCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCccccc
Q psy6353 78 -----------IKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERL 134 (136)
Q Consensus 78 -----------~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~ 134 (136)
..-..|||+||+.++|++.|+++|++||.|+.|+.++| +|||.|+++|++
T Consensus 246 ep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD-------YaFVHf~eR~da 306 (506)
T KOG0117|consen 246 EPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD-------YAFVHFAEREDA 306 (506)
T ss_pred CcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc-------eeEEeecchHHH
Confidence 11246999999999999999999999999999998865 789999999986
No 17
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.92 E-value=2.1e-24 Score=162.33 Aligned_cols=128 Identities=16% Similarity=0.285 Sum_probs=108.3
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc-cCCCceeeEEEEcCCHHHHHHHHHHHcCceeC-CceEEEEeeCCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI-STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQ-NKTIKVSYARPSSE 76 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~-~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~-g~~l~v~~~~~~~~ 76 (136)
|||+|||..++ |.++|++||.|.++++++ .+|+++|||||+|.+.++|+.|++.||+..+. |+.+.+..+.
T Consensus 61 lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~---- 136 (578)
T TIGR01648 61 VFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISV---- 136 (578)
T ss_pred EEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccccc----
Confidence 79999999998 999999999999999999 89999999999999999999999999998885 7887776654
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhcCCCc-eEEEEEE-eCCCCCC-ccceEeecCcccccc
Q psy6353 77 SIKGANLYVSGLPKHMSQQELESLFSPYGR-IITSRIL-CDNLATE-NGKYYSGLGGRERLR 135 (136)
Q Consensus 77 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~-v~~~~i~-~~~~~~~-~~~~fv~f~~~e~~~ 135 (136)
..++|||+|||.++++++|.+.|.+++. +..+.+. .+...+. ++.+||+|.+.++|.
T Consensus 137 --~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa 196 (578)
T TIGR01648 137 --DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAA 196 (578)
T ss_pred --cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHH
Confidence 3578999999999999999999999964 4444333 2233333 366999999998863
No 18
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.91 E-value=6.3e-24 Score=159.76 Aligned_cols=129 Identities=12% Similarity=0.219 Sum_probs=105.6
Q ss_pred eeecCCChhhh---HHHHhccC------------CCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceE
Q psy6353 2 VYQTLLNKLFT---YEKVHLGF------------SDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTI 66 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~------------G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l 66 (136)
|||+|||..+| |.++|.++ +.|..+. .+.++|||||+|.+.++|..|+. |||..+.|++|
T Consensus 178 lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~----~~~~kg~afVeF~~~e~A~~Al~-l~g~~~~g~~l 252 (509)
T TIGR01642 178 LYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVN----INKEKNFAFLEFRTVEEATFAMA-LDSIIYSNVFL 252 (509)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEE----ECCCCCEEEEEeCCHHHHhhhhc-CCCeEeeCcee
Confidence 89999999998 88999875 2333332 34678999999999999999995 99999999999
Q ss_pred EEEeeCCCC-----------------------------CCCCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCC
Q psy6353 67 KVSYARPSS-----------------------------ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNL 117 (136)
Q Consensus 67 ~v~~~~~~~-----------------------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~ 117 (136)
+|....... ......+|||+|||..+++++|+++|+.||.|..+.++.+..
T Consensus 253 ~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~ 332 (509)
T TIGR01642 253 KIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIA 332 (509)
T ss_pred EecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC
Confidence 996422110 012346899999999999999999999999999999999988
Q ss_pred CCCc-cceEeecCcccccc
Q psy6353 118 ATEN-GKYYSGLGGRERLR 135 (136)
Q Consensus 118 ~~~~-~~~fv~f~~~e~~~ 135 (136)
+|.+ |.|||+|.+.+.|.
T Consensus 333 ~g~~~g~afv~f~~~~~a~ 351 (509)
T TIGR01642 333 TGLSKGYAFCEYKDPSVTD 351 (509)
T ss_pred CCCcCeEEEEEECCHHHHH
Confidence 8866 56999999988763
No 19
>KOG0127|consensus
Probab=99.91 E-value=1.1e-23 Score=153.69 Aligned_cols=133 Identities=20% Similarity=0.327 Sum_probs=119.6
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc-cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCC-
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI-STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE- 76 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~-~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~- 76 (136)
|.|.|||..+. |+.+|+.||.|.+|.|++ ..|+-.|||||.|....+|..|++.+|+..|.||++.+.|+-++..
T Consensus 120 LIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~y 199 (678)
T KOG0127|consen 120 LIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTY 199 (678)
T ss_pred EEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecccccc
Confidence 57899999887 999999999999999999 7777779999999999999999999999999999999999765432
Q ss_pred --------------------------------------------------------------------------------
Q psy6353 77 -------------------------------------------------------------------------------- 76 (136)
Q Consensus 77 -------------------------------------------------------------------------------- 76 (136)
T Consensus 200 e~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~ 279 (678)
T KOG0127|consen 200 EDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKK 279 (678)
T ss_pred cccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCcccch
Confidence
Q ss_pred ---------CCCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccc-eEeecCccccc
Q psy6353 77 ---------SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGK-YYSGLGGRERL 134 (136)
Q Consensus 77 ---------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~-~fv~f~~~e~~ 134 (136)
..-+.+|||+|||+++|++.|.+.|++||+|.++.|+.++.++.+.| |||.|.+.+++
T Consensus 280 ~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~ 347 (678)
T KOG0127|consen 280 AQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAA 347 (678)
T ss_pred hccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHH
Confidence 00136899999999999999999999999999999999999999955 99999988764
No 20
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.90 E-value=2.9e-23 Score=156.20 Aligned_cols=134 Identities=22% Similarity=0.283 Sum_probs=111.2
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~ 76 (136)
|||+|||..++ |+++|++||.|..+.++. .+|.++|||||+|.+.++|+.|+..|||..++|+.|.|.++.....
T Consensus 298 l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~ 377 (509)
T TIGR01642 298 IYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGAN 377 (509)
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCC
Confidence 79999999998 999999999999999888 6899999999999999999999999999999999999988643211
Q ss_pred ----------------------------CCCCceEEEcCCCCCC----------CHHHHHHhhcCCCceEEEEEEeCCCC
Q psy6353 77 ----------------------------SIKGANLYVSGLPKHM----------SQQELESLFSPYGRIITSRILCDNLA 118 (136)
Q Consensus 77 ----------------------------~~~~~~l~v~nl~~~~----------t~~~l~~~f~~~G~v~~~~i~~~~~~ 118 (136)
.....+|++.|+.... ..++|+++|.+||.|..|.|+++...
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~ 457 (509)
T TIGR01642 378 QATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGD 457 (509)
T ss_pred CCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcC
Confidence 1134678889986421 23689999999999999999986322
Q ss_pred ---CC-ccceEeecCcccccc
Q psy6353 119 ---TE-NGKYYSGLGGRERLR 135 (136)
Q Consensus 119 ---~~-~~~~fv~f~~~e~~~ 135 (136)
+. .|.+||+|.+.|+|.
T Consensus 458 ~~~~~~~G~~fV~F~~~e~A~ 478 (509)
T TIGR01642 458 RNSTPGVGKVFLEYADVRSAE 478 (509)
T ss_pred CCcCCCcceEEEEECCHHHHH
Confidence 22 256899999999875
No 21
>KOG0127|consensus
Probab=99.90 E-value=2.2e-23 Score=152.08 Aligned_cols=134 Identities=17% Similarity=0.306 Sum_probs=121.3
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~ 76 (136)
|||++||...+ |.++|+..|+|..+.++. .++.++|||||+|...++++.|+...++..++|+.|.+..+.++..
T Consensus 8 lfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R~r 87 (678)
T KOG0127|consen 8 LFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKRAR 87 (678)
T ss_pred EEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccccc
Confidence 89999999998 999999999999999998 6778999999999999999999999999999999999987665432
Q ss_pred C--------------------------CCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCc
Q psy6353 77 S--------------------------IKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGG 130 (136)
Q Consensus 77 ~--------------------------~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~ 130 (136)
. ...++|.|+|||.++.+.+|+.+|+.||.|..+.|++...++.+|+|||.|..
T Consensus 88 ~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~ 167 (678)
T KOG0127|consen 88 SEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKE 167 (678)
T ss_pred chhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEee
Confidence 1 13678999999999999999999999999999999999999999999999987
Q ss_pred ccccc
Q psy6353 131 RERLR 135 (136)
Q Consensus 131 ~e~~~ 135 (136)
.-+|+
T Consensus 168 ~~dA~ 172 (678)
T KOG0127|consen 168 KKDAE 172 (678)
T ss_pred HHHHH
Confidence 76553
No 22
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.89 E-value=3.1e-22 Score=150.65 Aligned_cols=127 Identities=20% Similarity=0.269 Sum_probs=106.4
Q ss_pred eeecCCChhhh---HHHHhccCCC-eeEEEEEc---cCCCceeeEEEEcCCHHHHHHHHHHHcC--ceeCCceEEEEeeC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSD-AEICVFLI---STAQSLGYGFVNYHRPEDAEKAINTLNG--LRLQNKTIKVSYAR 72 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~-v~~~~~~~---~~~~~kg~~fv~f~~~~~a~~a~~~~~~--~~~~g~~l~v~~~~ 72 (136)
|||+|||..++ |.+.|++++. +.++.+.. ..++++|||||+|.+.++|..|+.+++. ..+.|+.|.|.|+.
T Consensus 141 LFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~ 220 (578)
T TIGR01648 141 LFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAE 220 (578)
T ss_pred eEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeec
Confidence 79999999998 7888888863 44444433 4567899999999999999999988763 56889999999998
Q ss_pred CCCCC-----CCCceEEEcCCCCCCCHHHHHHhhcCC--CceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 73 PSSES-----IKGANLYVSGLPKHMSQQELESLFSPY--GRIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 73 ~~~~~-----~~~~~l~v~nl~~~~t~~~l~~~f~~~--G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
+.... ....+|||+|||.++++++|+++|++| |.|..|.+++ +.+||+|+++|+|.
T Consensus 221 p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r-------gfAFVeF~s~e~A~ 283 (578)
T TIGR01648 221 PEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR-------DYAFVHFEDREDAV 283 (578)
T ss_pred ccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec-------CeEEEEeCCHHHHH
Confidence 76432 235789999999999999999999999 9999998774 47999999999875
No 23
>KOG0124|consensus
Probab=99.89 E-value=8.5e-23 Score=143.40 Aligned_cols=132 Identities=20% Similarity=0.337 Sum_probs=116.3
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~ 76 (136)
|||+.+..++. |+..|..||+|++|.+-. .+++.||||||+|+-++.|+.|+++|||..++||.|++.....-..
T Consensus 116 vYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNmpQ 195 (544)
T KOG0124|consen 116 VYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNMPQ 195 (544)
T ss_pred eeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCCcc
Confidence 78888887765 999999999999999888 8999999999999999999999999999999999999974432221
Q ss_pred -----------CCCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccc-eEeecCcccc
Q psy6353 77 -----------SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGK-YYSGLGGRER 133 (136)
Q Consensus 77 -----------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~-~fv~f~~~e~ 133 (136)
...-.++||..+.++++++||++.|..||+|..|.+.+++.++.+++ +|++|++..+
T Consensus 196 AQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs 264 (544)
T KOG0124|consen 196 AQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQS 264 (544)
T ss_pred cchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccc
Confidence 12457899999999999999999999999999999999998888855 8999988654
No 24
>KOG0109|consensus
Probab=99.88 E-value=1.6e-22 Score=138.02 Aligned_cols=118 Identities=24% Similarity=0.366 Sum_probs=108.9
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESI 78 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~~~ 78 (136)
|||+|||...+ |+.+|++||+|.+|.|++ .||||..++...++.|+.-|||.+|+|..|.|+-++++ +.
T Consensus 5 LFIGNLp~~~~~~elr~lFe~ygkVlECDIvK------NYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK--sk 76 (346)
T KOG0109|consen 5 LFIGNLPREATEQELRSLFEQYGKVLECDIVK------NYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK--SK 76 (346)
T ss_pred hhccCCCcccchHHHHHHHHhhCceEeeeeec------ccceEEeecccccHHHHhhcccceecceEEEEEecccc--CC
Confidence 79999999998 999999999999999986 79999999999999999999999999999999988876 34
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCccccc
Q psy6353 79 KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERL 134 (136)
Q Consensus 79 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~ 134 (136)
...+++|+|+.+.++.++++..|.+||+|+.|.|++ ..+||.|+..|++
T Consensus 77 ~stkl~vgNis~tctn~ElRa~fe~ygpviecdivk-------dy~fvh~d~~eda 125 (346)
T KOG0109|consen 77 ASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVK-------DYAFVHFDRAEDA 125 (346)
T ss_pred CccccccCCCCccccCHHHhhhhcccCCceeeeeec-------ceeEEEEeeccch
Confidence 778999999999999999999999999999999997 4579999887764
No 25
>KOG0123|consensus
Probab=99.86 E-value=4.4e-21 Score=138.50 Aligned_cols=132 Identities=28% Similarity=0.459 Sum_probs=119.0
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc-cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI-STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSES 77 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~-~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~~ 77 (136)
|||.||++.++ |.++|+.||.|.+|++.. ..| ++|| ||.|.+.+.|++|+..+||..+.++++-|.....+...
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er 156 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEER 156 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhh
Confidence 79999999999 999999999999999999 666 9999 99999999999999999999999999999766544331
Q ss_pred --------CCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 78 --------IKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 78 --------~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
..-..+++.|.+.+.+++.|...|+.+|.|.++.++.+..+...+.+||.|.+.|.++
T Consensus 157 ~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~ 222 (369)
T KOG0123|consen 157 EAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAK 222 (369)
T ss_pred cccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHH
Confidence 2346789999999999999999999999999999999998887788999999988764
No 26
>KOG0110|consensus
Probab=99.86 E-value=2.2e-21 Score=145.06 Aligned_cols=134 Identities=19% Similarity=0.329 Sum_probs=114.7
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc-cCC----CceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI-STA----QSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARP 73 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~-~~~----~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~ 73 (136)
+|+.||+...| +..+|.+.|.|.++.|.. ..+ .|.|||||+|.+.++|+.|+.+|+|+.+.|+.|.|+.+..
T Consensus 518 lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~ 597 (725)
T KOG0110|consen 518 LFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISEN 597 (725)
T ss_pred hhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccC
Confidence 68999999888 888999999999998887 333 3669999999999999999999999999999999988872
Q ss_pred CCC---------CCCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCC-ccceEeecCcccccc
Q psy6353 74 SSE---------SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATE-NGKYYSGLGGRERLR 135 (136)
Q Consensus 74 ~~~---------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~-~~~~fv~f~~~e~~~ 135 (136)
++. ....++|.|+|||+.++..+++.+|..||++.+|+|+.....+. +|++||+|.+..++.
T Consensus 598 k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~ 669 (725)
T KOG0110|consen 598 KPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAK 669 (725)
T ss_pred ccccccccccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHH
Confidence 211 12357899999999999999999999999999999998855555 467999999977653
No 27
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.86 E-value=1.6e-20 Score=139.86 Aligned_cols=131 Identities=25% Similarity=0.419 Sum_probs=108.1
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~ 76 (136)
|||+|||..++ |+++|++||.|..+.++. .+|+++|||||+|.+.++|..|+..|||..+.|++|.|.++.....
T Consensus 189 l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~~~~ 268 (457)
T TIGR01622 189 LYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQDSTY 268 (457)
T ss_pred EEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccCCCc
Confidence 89999999988 999999999999999988 6779999999999999999999999999999999999998431100
Q ss_pred --------------------------------------------------------------------------------
Q psy6353 77 -------------------------------------------------------------------------------- 76 (136)
Q Consensus 77 -------------------------------------------------------------------------------- 76 (136)
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (457)
T TIGR01622 269 LLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALAIMA 348 (457)
T ss_pred cccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhcccccccccccccccccccccccccc
Confidence
Q ss_pred ----------CCCCceEEEcCCCCCCC----------HHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 77 ----------SIKGANLYVSGLPKHMS----------QQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 77 ----------~~~~~~l~v~nl~~~~t----------~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
......|++.||....+ .+||++.|++||.|..+.+.... ..|.+||+|.+.|+|.
T Consensus 349 ~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~~---~~G~~fV~F~~~e~A~ 424 (457)
T TIGR01622 349 RNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTKN---SAGKIYLKFSSVDAAL 424 (457)
T ss_pred CCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCCC---CceeEEEEECCHHHHH
Confidence 01234577788754433 36899999999999999987542 3366899999999874
No 28
>KOG4205|consensus
Probab=99.85 E-value=7.1e-21 Score=133.75 Aligned_cols=134 Identities=19% Similarity=0.433 Sum_probs=120.7
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~ 76 (136)
+||+.|+...+ |++.|++||++.++.+++ .+++++||+||+|++.+.+.+++.. ..+.+.|+.|.+..+.|+..
T Consensus 9 lfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~av~r~~ 87 (311)
T KOG4205|consen 9 LFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRAVSRED 87 (311)
T ss_pred eeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceeccCccc
Confidence 68999999888 999999999999999999 8899999999999999999999884 46889999999998887765
Q ss_pred CC------CCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccc-eEeecCccccccC
Q psy6353 77 SI------KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGK-YYSGLGGRERLRR 136 (136)
Q Consensus 77 ~~------~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~-~fv~f~~~e~~~~ 136 (136)
.. ...++||++||..++++++++.|.+||.|..+.++.|..+...++ +||.|.++|.+++
T Consensus 88 ~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdk 154 (311)
T KOG4205|consen 88 QTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDK 154 (311)
T ss_pred ccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccce
Confidence 43 245899999999999999999999999999999999999998855 9999999998764
No 29
>KOG0105|consensus
Probab=99.80 E-value=8.5e-19 Score=113.11 Aligned_cols=127 Identities=20% Similarity=0.277 Sum_probs=108.7
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCC--
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE-- 76 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~-- 76 (136)
+||+|||..+. ++++|.+||.|..|.+.. .....+||||+|+++.+|+.|+..-+|..+.|..|+|+++..-..
T Consensus 9 iyvGNLP~diRekeieDlFyKyg~i~~ieLK~-r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprggr~s~ 87 (241)
T KOG0105|consen 9 IYVGNLPGDIREKEIEDLFYKYGRIREIELKN-RPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGGRSSS 87 (241)
T ss_pred EEecCCCcchhhccHHHHHhhhcceEEEEecc-CCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCCCccc
Confidence 79999999987 999999999999988764 333568999999999999999999999999999999987653211
Q ss_pred ------------------------CCCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCccc
Q psy6353 77 ------------------------SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRE 132 (136)
Q Consensus 77 ------------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e 132 (136)
......+.|++||++.+++||++...+-|.|....+.+| +.+-|+|...|
T Consensus 88 ~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD------g~GvV~~~r~e 161 (241)
T KOG0105|consen 88 DRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD------GVGVVEYLRKE 161 (241)
T ss_pred ccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc------cceeeeeeehh
Confidence 124468999999999999999999999999988888877 35679999999
Q ss_pred ccc
Q psy6353 133 RLR 135 (136)
Q Consensus 133 ~~~ 135 (136)
+|+
T Consensus 162 DMk 164 (241)
T KOG0105|consen 162 DMK 164 (241)
T ss_pred hHH
Confidence 885
No 30
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.78 E-value=1.7e-18 Score=110.56 Aligned_cols=75 Identities=24% Similarity=0.367 Sum_probs=70.5
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~ 76 (136)
|||+|||..++ |+++|++||+|.++.++. .+++++|||||+|.+.++|+.|++.+|+..+.|++|+|.++.++..
T Consensus 37 lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~~~~~ 116 (144)
T PLN03134 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDRPS 116 (144)
T ss_pred EEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCCcCCC
Confidence 89999999998 999999999999999988 6899999999999999999999999999999999999999876543
No 31
>KOG0144|consensus
Probab=99.77 E-value=1.3e-18 Score=124.35 Aligned_cols=75 Identities=27% Similarity=0.442 Sum_probs=68.7
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc-cCCCceeeEEEEcCCHHHHHHHHHHHcC-ceeCC--ceEEEEeeCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI-STAQSLGYGFVNYHRPEDAEKAINTLNG-LRLQN--KTIKVSYARPS 74 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~-~~~~~kg~~fv~f~~~~~a~~a~~~~~~-~~~~g--~~l~v~~~~~~ 74 (136)
|||+-|++..+ ++++|++||.|.+|.+.+ ..+.++|||||.|.+.+.|..|+++||| .++.| .+|.|+|++++
T Consensus 127 LFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtq 206 (510)
T KOG0144|consen 127 LFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQ 206 (510)
T ss_pred hhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccC
Confidence 68999999886 999999999999999999 9999999999999999999999999999 66765 68999999876
Q ss_pred CC
Q psy6353 75 SE 76 (136)
Q Consensus 75 ~~ 76 (136)
++
T Consensus 207 kd 208 (510)
T KOG0144|consen 207 KD 208 (510)
T ss_pred CC
Confidence 64
No 32
>KOG4206|consensus
Probab=99.76 E-value=8.5e-18 Score=111.43 Aligned_cols=127 Identities=19% Similarity=0.336 Sum_probs=109.0
Q ss_pred eeecCCChhhh-------HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCC
Q psy6353 2 VYQTLLNKLFT-------YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPS 74 (136)
Q Consensus 2 v~v~nl~~~~~-------l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~ 74 (136)
+||.||++-+. |..+|++||.|..|... .+.+.+|.|||.|.+.+.|-.|+.+|+|..+.|+++++.++..+
T Consensus 12 lYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~-kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~s~ 90 (221)
T KOG4206|consen 12 LYINNLNEKIKKDELKRSLYLLFSQFGKILDISAF-KTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAKSD 90 (221)
T ss_pred EeehhccccccHHHHHHHHHHHHHhhCCeEEEEec-CCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecccCc
Confidence 79999998886 56699999999988766 47788999999999999999999999999999999999987653
Q ss_pred CC--------------------------------------------------CCCCceEEEcCCCCCCCHHHHHHhhcCC
Q psy6353 75 SE--------------------------------------------------SIKGANLYVSGLPKHMSQQELESLFSPY 104 (136)
Q Consensus 75 ~~--------------------------------------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~ 104 (136)
.. ......+++.|||...+.+.+..+|.+|
T Consensus 91 sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~lf~qf 170 (221)
T KOG4206|consen 91 SDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSDLFEQF 170 (221)
T ss_pred cchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHHHHHhhC
Confidence 32 1123579999999999999999999999
Q ss_pred CceEEEEEEeCCCCCCccceEeecCcccc
Q psy6353 105 GRIITSRILCDNLATENGKYYSGLGGRER 133 (136)
Q Consensus 105 G~v~~~~i~~~~~~~~~~~~fv~f~~~e~ 133 (136)
+....++++. +.++.+||+|.++-+
T Consensus 171 ~g~keir~i~----~~~~iAfve~~~d~~ 195 (221)
T KOG4206|consen 171 PGFKEIRLIP----PRSGIAFVEFLSDRQ 195 (221)
T ss_pred cccceeEecc----CCCceeEEecchhhh
Confidence 9999999886 455779999998754
No 33
>KOG0146|consensus
Probab=99.75 E-value=1.5e-17 Score=112.86 Aligned_cols=75 Identities=27% Similarity=0.489 Sum_probs=63.3
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc-cCCCceeeEEEEcCCHHHHHHHHHHHcC-ceeCC--ceEEEEeeCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI-STAQSLGYGFVNYHRPEDAEKAINTLNG-LRLQN--KTIKVSYARPS 74 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~-~~~~~kg~~fv~f~~~~~a~~a~~~~~~-~~~~g--~~l~v~~~~~~ 74 (136)
|||+.|.+.-. ++.+|..||.+.+|.+.+ ..|.+|||+||.|.+.-+|+.||+.||| .++.| ..|.|++++..
T Consensus 22 lfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ADTd 101 (371)
T KOG0146|consen 22 LFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKFADTD 101 (371)
T ss_pred hhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEeccch
Confidence 56777765444 789999999999999999 9999999999999999999999999999 55654 67888887765
Q ss_pred CC
Q psy6353 75 SE 76 (136)
Q Consensus 75 ~~ 76 (136)
++
T Consensus 102 kE 103 (371)
T KOG0146|consen 102 KE 103 (371)
T ss_pred HH
Confidence 43
No 34
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.75 E-value=1.5e-17 Score=93.52 Aligned_cols=66 Identities=32% Similarity=0.497 Sum_probs=63.3
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc-cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEE
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI-STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIK 67 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~-~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~ 67 (136)
|||+|||..++ |+++|++||++..+.+.. .+++++|+|||+|.+.++|+.|+..+||..+.|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 79999999999 999999999999999999 8999999999999999999999999999999999875
No 35
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.75 E-value=4.9e-17 Score=123.18 Aligned_cols=72 Identities=19% Similarity=0.391 Sum_probs=67.6
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARP 73 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~ 73 (136)
|||+|||..++ |+++|+.||+|.++.+++ .+++++|||||+|.+.++|..|+..||+..++|+.|+|.++.+
T Consensus 207 LfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~ 283 (612)
T TIGR01645 207 IYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVT 283 (612)
T ss_pred EEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCC
Confidence 79999999988 999999999999999998 6788999999999999999999999999999999999987653
No 36
>KOG0147|consensus
Probab=99.72 E-value=2.6e-18 Score=125.75 Aligned_cols=123 Identities=20% Similarity=0.307 Sum_probs=107.6
Q ss_pred HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCC--------------
Q psy6353 13 YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE-------------- 76 (136)
Q Consensus 13 l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~-------------- 76 (136)
|.++|+.+|+|..|.++. .++.+||.|+|+|.+.+++..|+. |.|..+.|.+|.|..+....+
T Consensus 196 L~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq~sEaeknr~a~~s~a~~~k~~ 274 (549)
T KOG0147|consen 196 LEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQLSEAEKNRAANASPALQGKGF 274 (549)
T ss_pred HHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEecccHHHHHHHHhcccccccccc
Confidence 899999999999999998 889999999999999999999996 899999999999976543221
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCc-cceEeecCccccccC
Q psy6353 77 SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATEN-GKYYSGLGGRERLRR 136 (136)
Q Consensus 77 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~-~~~fv~f~~~e~~~~ 136 (136)
..+-..|||+||.+++++++++.+|.+||.|..+.++.|..+|.+ +++|++|.+.|.+|+
T Consensus 275 ~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~ 335 (549)
T KOG0147|consen 275 TGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARK 335 (549)
T ss_pred ccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHH
Confidence 112233899999999999999999999999999999999977777 559999999998763
No 37
>KOG0125|consensus
Probab=99.68 E-value=9.7e-17 Score=111.42 Aligned_cols=73 Identities=22% Similarity=0.348 Sum_probs=67.9
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPS 74 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~ 74 (136)
|+|+|||..+. |+.+|++||+|.+|.|+.+...|||||||+|++.+||++|..+|||..+.||+|+|+.+.++
T Consensus 99 LhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATar 174 (376)
T KOG0125|consen 99 LHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATAR 174 (376)
T ss_pred eEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccchh
Confidence 78999999997 99999999999999999966669999999999999999999999999999999999877643
No 38
>KOG0122|consensus
Probab=99.67 E-value=2.9e-16 Score=105.18 Aligned_cols=73 Identities=29% Similarity=0.442 Sum_probs=69.9
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPS 74 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~ 74 (136)
|-|.||+++++ |+++|.+||++..+.+.+ .+|.+||||||+|.+.++|.+|+..|||+-+.+--|+|.|++|+
T Consensus 192 vRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwskP~ 269 (270)
T KOG0122|consen 192 VRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSKPS 269 (270)
T ss_pred eEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecCCC
Confidence 45889999998 999999999999999999 89999999999999999999999999999999999999999986
No 39
>KOG0148|consensus
Probab=99.65 E-value=3.2e-16 Score=106.47 Aligned_cols=102 Identities=15% Similarity=0.308 Sum_probs=85.2
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeC-----C
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR-----P 73 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~-----~ 73 (136)
|||+||+..+| |..||++.|++.+++++.. .+++.|+. +
T Consensus 9 lyvgnld~~vte~~i~~lf~qig~v~~~k~i~~---------------------------------e~~v~wa~~p~nQs 55 (321)
T KOG0148|consen 9 LYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD---------------------------------ELKVNWATAPGNQS 55 (321)
T ss_pred EEeeccChhhHHHHHHHHHHhccccccceeehh---------------------------------hhccccccCcccCC
Confidence 89999999999 8999999999999999861 22333322 2
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccc-eEeecCccccccC
Q psy6353 74 SSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGK-YYSGLGGRERLRR 136 (136)
Q Consensus 74 ~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~-~fv~f~~~e~~~~ 136 (136)
++.....-.+||+.|.+.++-++|++.|.+||+|.++++++|..++++++ +||.|..+|+|++
T Consensus 56 k~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEn 119 (321)
T KOG0148|consen 56 KPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAEN 119 (321)
T ss_pred CCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHH
Confidence 22233456799999999999999999999999999999999999999966 8999999999863
No 40
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.65 E-value=2.2e-15 Score=84.88 Aligned_cols=66 Identities=27% Similarity=0.461 Sum_probs=59.8
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc-cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEE
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI-STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIK 67 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~-~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~ 67 (136)
|||+|||..++ |.++|+.+|.|..+.+.. ..++++|+|||+|.+.++|..|++.+++..+.|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999998 999999999999999998 5589999999999999999999999988999999874
No 41
>KOG0147|consensus
Probab=99.63 E-value=9.6e-16 Score=112.47 Aligned_cols=69 Identities=33% Similarity=0.485 Sum_probs=65.4
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEe
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY 70 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~ 70 (136)
|||+||..+++ ++.+|+.||+|..|.++. .+|++|||||++|.+.++|..|+.+|||+.+.|+.|+|..
T Consensus 281 l~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~ 354 (549)
T KOG0147|consen 281 LYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSV 354 (549)
T ss_pred hhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEE
Confidence 59999999998 999999999999999999 4999999999999999999999999999999999999864
No 42
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.61 E-value=1.8e-14 Score=99.72 Aligned_cols=116 Identities=31% Similarity=0.472 Sum_probs=100.6
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeC----
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR---- 72 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~---- 72 (136)
|||+|||..++ |.++|.+||.+..+.+.. .++.++|+|||+|.+.++|..|+..++|..+.|+++.+.+..
T Consensus 118 l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~~~~ 197 (306)
T COG0724 118 LFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQPASQ 197 (306)
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccccccc
Confidence 79999999998 999999999999999988 589999999999999999999999999999999999998843
Q ss_pred CCCCC--------------------CCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCC
Q psy6353 73 PSSES--------------------IKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNL 117 (136)
Q Consensus 73 ~~~~~--------------------~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~ 117 (136)
+.... .....+++.+++..++..++...|..+|.+....+.....
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (306)
T COG0724 198 PRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKD 262 (306)
T ss_pred cccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCC
Confidence 22211 2346789999999999999999999999996666665443
No 43
>KOG0107|consensus
Probab=99.59 E-value=4.5e-15 Score=95.05 Aligned_cols=71 Identities=24% Similarity=0.371 Sum_probs=65.7
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSS 75 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~ 75 (136)
|||+||+...+ |+..|..||++.+++|.+ .+.|||||+|+++.+|+.|+..|+|..|.|..+.|+.+.-..
T Consensus 13 VYVGnL~~~a~k~eLE~~F~~yG~lrsvWvAr---nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~ 86 (195)
T KOG0107|consen 13 VYVGNLGSRATKRELERAFSKYGPLRSVWVAR---NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRP 86 (195)
T ss_pred EEeccCCCCcchHHHHHHHHhcCcceeEEEee---cCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCc
Confidence 89999999998 999999999999999887 778999999999999999999999999999999998776544
No 44
>KOG0149|consensus
Probab=99.58 E-value=2.6e-15 Score=100.22 Aligned_cols=70 Identities=20% Similarity=0.297 Sum_probs=62.6
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR 72 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~ 72 (136)
|||++|+.... |+++|++||+|.+..++. .+|+|||||||+|.|.+.|.+|++.- .-.|+||+..|+.+.
T Consensus 15 ifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp-~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 15 IFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDP-NPIIDGRKANCNLAS 89 (247)
T ss_pred EEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCC-CCcccccccccchhh
Confidence 79999999887 999999999999998888 89999999999999999999999854 466899998887543
No 45
>KOG1457|consensus
Probab=99.58 E-value=2.3e-14 Score=95.26 Aligned_cols=130 Identities=18% Similarity=0.250 Sum_probs=101.8
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc-cCC--CceeeEEEEcCCHHHHHHHHHHHcCceeC---CceEEEEeeC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI-STA--QSLGYGFVNYHRPEDAEKAINTLNGLRLQ---NKTIKVSYAR 72 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~-~~~--~~kg~~fv~f~~~~~a~~a~~~~~~~~~~---g~~l~v~~~~ 72 (136)
|||++||..+. |..+|..|-......+.. ..+ -.+-+||++|.+..+|.+|+++|||..++ ++.|++..++
T Consensus 37 LFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiElAK 116 (284)
T KOG1457|consen 37 LFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIELAK 116 (284)
T ss_pred eeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEeeehh
Confidence 79999999998 888899888777776655 221 23579999999999999999999999987 7788887765
Q ss_pred CCCCC---------------------------------------------------------------------------
Q psy6353 73 PSSES--------------------------------------------------------------------------- 77 (136)
Q Consensus 73 ~~~~~--------------------------------------------------------------------------- 77 (136)
...+.
T Consensus 117 SNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P~a~a~ 196 (284)
T KOG1457|consen 117 SNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAPSANAH 196 (284)
T ss_pred cCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCCcccch
Confidence 43220
Q ss_pred -----------CCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCccccc
Q psy6353 78 -----------IKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERL 134 (136)
Q Consensus 78 -----------~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~ 134 (136)
..-.+|||-||.++++|++|+.+|+.|......+|-. .|....+|++|++-|.+
T Consensus 197 l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~---~~g~~vaf~~~~~~~~a 261 (284)
T KOG1457|consen 197 LEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRA---RGGMPVAFADFEEIEQA 261 (284)
T ss_pred hhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEec---CCCcceEeecHHHHHHH
Confidence 0124899999999999999999999998776666653 34446789999877654
No 46
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.57 E-value=1.5e-14 Score=104.23 Aligned_cols=74 Identities=23% Similarity=0.345 Sum_probs=67.6
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCC--ceEEEEeeCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQN--KTIKVSYARPS 74 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g--~~l~v~~~~~~ 74 (136)
|||.|||..++ |+++|++||.|..+.+++ .+++++|||||+|.+.++|++|+++||+..+.+ ++|+|.++...
T Consensus 196 lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~ 275 (346)
T TIGR01659 196 LYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEEH 275 (346)
T ss_pred eEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCcc
Confidence 79999999998 999999999999999988 689999999999999999999999999998865 78899887754
Q ss_pred C
Q psy6353 75 S 75 (136)
Q Consensus 75 ~ 75 (136)
.
T Consensus 276 ~ 276 (346)
T TIGR01659 276 G 276 (346)
T ss_pred c
Confidence 3
No 47
>KOG4211|consensus
Probab=99.57 E-value=3.7e-14 Score=103.13 Aligned_cols=133 Identities=18% Similarity=0.191 Sum_probs=104.2
Q ss_pred eeecCCChhhhHHHHhccCC--CeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCC---
Q psy6353 2 VYQTLLNKLFTYEKVHLGFS--DAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE--- 76 (136)
Q Consensus 2 v~v~nl~~~~~l~~~f~~~G--~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~--- 76 (136)
|-+..||.+.|.+++...|+ .|.++.+.+.+|+..|-|||+|.+.++++.|++ .+...+..|.|.|-.+.+...
T Consensus 13 vr~rGLPwsat~~ei~~Ff~~~~I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~~~e~d~~ 91 (510)
T KOG4211|consen 13 VRLRGLPWSATEKEILDFFSNCGIENLEIPRRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAGGAEADWV 91 (510)
T ss_pred EEecCCCccccHHHHHHHHhcCceeEEEEeccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccCCcccccc
Confidence 44578999999555555544 346666666889999999999999999999999 578889999999976543221
Q ss_pred --------CCCCceEEEcCCCCCCCHHHHHHhhcCCCceEE-EEEEeCCCCCCccceEeecCcccccc
Q psy6353 77 --------SIKGANLYVSGLPKHMSQQELESLFSPYGRIIT-SRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 77 --------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~-~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
......|.+++||..+|++||.++|+..-.|.. +-++.++.....+.|||.|++.|.+.
T Consensus 92 ~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae 159 (510)
T KOG4211|consen 92 MRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAE 159 (510)
T ss_pred ccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHH
Confidence 125568999999999999999999998876665 45666666666677999999999874
No 48
>KOG0126|consensus
Probab=99.55 E-value=5.7e-16 Score=99.78 Aligned_cols=71 Identities=23% Similarity=0.341 Sum_probs=67.2
Q ss_pred CeeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEee
Q psy6353 1 MVYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYA 71 (136)
Q Consensus 1 ~v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~ 71 (136)
|+|+++||...| |-..|++||.+.+|.+++ .||+|+||||+.|.+..+...|+.-+||..|.||.|+|.+.
T Consensus 37 ~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 37 YIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred EEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 689999999999 788899999999999999 89999999999999999999999999999999999999654
No 49
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.55 E-value=2.8e-14 Score=97.70 Aligned_cols=70 Identities=17% Similarity=0.219 Sum_probs=63.7
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARP 73 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~ 73 (136)
|||+|||...+ |+++|++||+|.++.+++. +.++|||||+|.++++|+.|+. |||..+.|++|.|.++..
T Consensus 7 VfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d-~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 7 VKVSNVSLKATERDIKEFFSFSGDIEYVEMQSE-NERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeec-CCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 89999999998 9999999999999999872 2357999999999999999996 999999999999998764
No 50
>KOG4212|consensus
Probab=99.54 E-value=1.8e-13 Score=98.74 Aligned_cols=131 Identities=15% Similarity=0.269 Sum_probs=112.3
Q ss_pred CeeecCCChhhh---HHHHhc-cCCCeeEEEEEc-cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCC
Q psy6353 1 MVYQTLLNKLFT---YEKVHL-GFSDAEICVFLI-STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSS 75 (136)
Q Consensus 1 ~v~v~nl~~~~~---l~~~f~-~~G~v~~~~~~~-~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~ 75 (136)
|||+.|+|..+. |++++. +-|+|..|.+.. .+|+++|||.|+|++++.+++|++.||.+.+.||+|.++-....+
T Consensus 46 ~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~d~q 125 (608)
T KOG4212|consen 46 SVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDHDEQ 125 (608)
T ss_pred eEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccCchh
Confidence 689999999987 999995 789999999998 999999999999999999999999999999999999997433211
Q ss_pred C-------------------------------------------------------------------------------
Q psy6353 76 E------------------------------------------------------------------------------- 76 (136)
Q Consensus 76 ~------------------------------------------------------------------------------- 76 (136)
.
T Consensus 126 ~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~Flr 205 (608)
T KOG4212|consen 126 RDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSASFLR 205 (608)
T ss_pred hhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhhhhh
Confidence 0
Q ss_pred ------CCCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCcc
Q psy6353 77 ------SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGR 131 (136)
Q Consensus 77 ------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~ 131 (136)
..-..++||.||...+..+.|.+.|.--|.|..+.+--|+...+.+.+-.++++.
T Consensus 206 ~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hp 266 (608)
T KOG4212|consen 206 SLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHP 266 (608)
T ss_pred hccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecch
Confidence 0112578999999999999999999999999999999999887777777777654
No 51
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.54 E-value=9e-14 Score=74.98 Aligned_cols=56 Identities=34% Similarity=0.563 Sum_probs=50.0
Q ss_pred HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEee
Q psy6353 13 YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYA 71 (136)
Q Consensus 13 l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~ 71 (136)
|.++|++||+|.++.+.... +++|||+|.+.++|+.|++.+||..+.|++|+|.++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~---~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK---RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS---TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 57899999999999987611 589999999999999999999999999999999875
No 52
>PLN03213 repressor of silencing 3; Provisional
Probab=99.53 E-value=2.6e-14 Score=104.42 Aligned_cols=117 Identities=10% Similarity=0.181 Sum_probs=85.6
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCH--HHHHHHHHHHcCceeCCceEEEEeeCCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRP--EDAEKAINTLNGLRLQNKTIKVSYARPSSE 76 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~--~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~ 76 (136)
|||+||+..++ |+++|+.||.|.++.|++.+| +|||||+|.+. .++.+|+.+|||..+.|+.|+|..++|.--
T Consensus 13 IYVGNLSydVTEDDLravFSeFGsVkdVEIpRETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP~YL 90 (759)
T PLN03213 13 LHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKEHYL 90 (759)
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccHHHH
Confidence 79999999999 999999999999999998666 89999999987 689999999999999999999998876310
Q ss_pred -----------CCCCceEEEcCCCCC-CCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEe
Q psy6353 77 -----------SIKGANLYVSGLPKH-MSQQELESLFSPYGRIITSRILCDNLATENGKYYS 126 (136)
Q Consensus 77 -----------~~~~~~l~v~nl~~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv 126 (136)
.....++- +|.. ....+|+-+|...+++ +-++-..+|++++.|=
T Consensus 91 eRLkrEReea~s~~~~~~k---l~k~~~e~~qLnifFPrLrKv---KslPfsGTGKHkYSFr 146 (759)
T PLN03213 91 ARLKREWEAASSTSDNTIK---APSDSPPATHLNIFFPRLRKV---KAMPLSGTGKHKYSFQ 146 (759)
T ss_pred HHHHHHHHHhhcccccccc---ccccCCccceeeEeccccccc---cccccCCCccceeeee
Confidence 01112222 2222 2333455566555544 4344556777766653
No 53
>smart00362 RRM_2 RNA recognition motif.
Probab=99.52 E-value=1.2e-13 Score=77.19 Aligned_cols=67 Identities=31% Similarity=0.477 Sum_probs=61.2
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEE
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKV 68 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v 68 (136)
||+.|||...+ |+++|++||++..+.+....+.++|+|||+|.+.++|+.|+..+++..+.|+++.+
T Consensus 2 v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 2 LFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred EEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 79999999888 99999999999999888733778999999999999999999999999999998876
No 54
>KOG0106|consensus
Probab=99.51 E-value=2e-14 Score=96.07 Aligned_cols=122 Identities=25% Similarity=0.371 Sum_probs=102.3
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCC---
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSS--- 75 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~--- 75 (136)
||+++||+... ++.+|..||.+..+.+.. ||+||+|.+..+|+.|+..+|+..+.+-.+.+.++....
T Consensus 4 v~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~~ 77 (216)
T KOG0106|consen 4 VYIGRLPYRARERDVERFFKGYGKIPDADMKN------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRGR 77 (216)
T ss_pred eeecccCCccchhHHHHHHhhccccccceeec------ccceeccCchhhhhcccchhcCceecceeeeeeccccccccc
Confidence 79999999988 999999999999998764 899999999999999999999999998888887776310
Q ss_pred ---C--------------CCCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCccccccC
Q psy6353 76 ---E--------------SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLRR 136 (136)
Q Consensus 76 ---~--------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~~ 136 (136)
. ......+.+.+++....+.+|.+.|.++|++....+ ....++|+|+.+|+|++
T Consensus 78 g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~-------~~~~~~v~Fs~~~da~r 148 (216)
T KOG0106|consen 78 GRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA-------RRNFAFVEFSEQEDAKR 148 (216)
T ss_pred CCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh-------hccccceeehhhhhhhh
Confidence 0 124467889999999999999999999999855444 22557999999999875
No 55
>KOG4207|consensus
Probab=99.49 E-value=3.2e-14 Score=93.53 Aligned_cols=71 Identities=25% Similarity=0.381 Sum_probs=64.7
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR 72 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~ 72 (136)
|-|.||-.-.+ |..+|++||.|-+|.|++ .+++++|||||.|.+..+|+.|+.+|+|..+.|+.|.|+.+.
T Consensus 16 LkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 16 LKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred EEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 45678877666 999999999999999999 899999999999999999999999999999999999886554
No 56
>smart00360 RRM RNA recognition motif.
Probab=99.48 E-value=2.4e-13 Score=75.60 Aligned_cols=65 Identities=32% Similarity=0.471 Sum_probs=59.2
Q ss_pred ecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEE
Q psy6353 4 QTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKV 68 (136)
Q Consensus 4 v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v 68 (136)
++|||..++ |+++|++||.+..+.+.. .++.++|+|||+|.+.++|..|+..+++..+.|+.+.+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 478888887 899999999999998888 46889999999999999999999999999999998876
No 57
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.48 E-value=2.5e-13 Score=91.82 Aligned_cols=69 Identities=13% Similarity=0.088 Sum_probs=62.8
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR 72 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~ 72 (136)
|||+||+...| |+++|+++|+|.+|.+++ .+..+|+|||+|.+++.++.|+. |||..|.+++|.|..+.
T Consensus 8 V~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~-D~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 8 AEVTNLSPKATEKDVYDFFSHCGAIEHVEIIR-SGEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWG 79 (243)
T ss_pred EEEecCCCCCCHHHHHHHHHhcCCeEEEEEec-CCCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCc
Confidence 79999999999 999999999999999987 34556899999999999999997 99999999999997654
No 58
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.45 E-value=2.1e-13 Score=87.10 Aligned_cols=58 Identities=14% Similarity=0.390 Sum_probs=53.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCc-cceEeecCcccccc
Q psy6353 78 IKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATEN-GKYYSGLGGRERLR 135 (136)
Q Consensus 78 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~-~~~fv~f~~~e~~~ 135 (136)
...++|||+|||..+++++|+++|.+||.|.++.++.|+.++.+ +++||+|.+.|+|.
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~ 90 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAAT 90 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHH
Confidence 35678999999999999999999999999999999999988877 55999999999875
No 59
>smart00361 RRM_1 RNA recognition motif.
Probab=99.45 E-value=5.9e-13 Score=75.00 Aligned_cols=56 Identities=27% Similarity=0.436 Sum_probs=48.5
Q ss_pred HHHHhc----cCCCeeEEE-EEc--cC--CCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEE
Q psy6353 13 YEKVHL----GFSDAEICV-FLI--ST--AQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKV 68 (136)
Q Consensus 13 l~~~f~----~~G~v~~~~-~~~--~~--~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v 68 (136)
|+++|+ +||.|.++. ++. .+ ++++|+|||+|.+.++|..|+..|||..+.|+.|++
T Consensus 5 l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 5 FEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred HHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 456666 999999985 433 44 899999999999999999999999999999999876
No 60
>KOG0111|consensus
Probab=99.44 E-value=2e-13 Score=90.70 Aligned_cols=74 Identities=28% Similarity=0.480 Sum_probs=70.8
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSS 75 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~ 75 (136)
|||+.|-++++ |...|-+||.|..|.++. .+++.+|||||+|...++|.+|+.-||+.++.||.|+|.++.|..
T Consensus 13 lYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~AkP~k 91 (298)
T KOG0111|consen 13 LYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAKPEK 91 (298)
T ss_pred EEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecCCcc
Confidence 79999999999 899999999999999999 889999999999999999999999999999999999999999865
No 61
>KOG1190|consensus
Probab=99.44 E-value=3.5e-12 Score=91.30 Aligned_cols=127 Identities=18% Similarity=0.266 Sum_probs=100.7
Q ss_pred eeecCCCh-hhh---HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCCC
Q psy6353 2 VYQTLLNK-LFT---YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSES 77 (136)
Q Consensus 2 v~v~nl~~-~~~---l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~~ 77 (136)
|-|+||.+ .+| |..+|+-||.|..|++.... +--|+|.+.+...|+.|++.|+|+.++|++|++.+++...-.
T Consensus 300 llvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk---kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vq 376 (492)
T KOG1190|consen 300 LLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK---KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQ 376 (492)
T ss_pred EEEecCchhccchhHHHHHHhhhcceEEEEeeecC---CcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcccc
Confidence 34566654 445 88899999999999999822 245999999999999999999999999999999877632210
Q ss_pred -----------------------------------CCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCcc
Q psy6353 78 -----------------------------------IKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122 (136)
Q Consensus 78 -----------------------------------~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~ 122 (136)
.+..++..+|+|+++++++++.+|..-|-........ .+.++
T Consensus 377 lp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff---~kd~k 453 (492)
T KOG1190|consen 377 LPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFF---QKDRK 453 (492)
T ss_pred CCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeec---CCCcc
Confidence 2346899999999999999999999988765544333 23557
Q ss_pred ceEeecCccccc
Q psy6353 123 KYYSGLGGRERL 134 (136)
Q Consensus 123 ~~fv~f~~~e~~ 134 (136)
.+.+.+++.|++
T Consensus 454 mal~q~~sveeA 465 (492)
T KOG1190|consen 454 MALPQLESVEEA 465 (492)
T ss_pred eeecccCChhHh
Confidence 789999999886
No 62
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.43 E-value=1.6e-13 Score=76.94 Aligned_cols=53 Identities=25% Similarity=0.553 Sum_probs=48.2
Q ss_pred EEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 83 LYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 83 l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
|||+|||+++|+++|+++|++||.|..+.+..+......+.|||+|+++|+|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~ 53 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAE 53 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHH
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHH
Confidence 79999999999999999999999999999999855555577999999999875
No 63
>KOG0121|consensus
Probab=99.43 E-value=3.6e-13 Score=82.35 Aligned_cols=71 Identities=24% Similarity=0.392 Sum_probs=64.7
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR 72 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~ 72 (136)
|||+||+...+ +.++|++.|+|..|.+-. .+..+.|||||+|.+.++|..|+.-++|..+..++|++.|.-
T Consensus 39 vyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 39 VYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA 114 (153)
T ss_pred EEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence 89999999888 899999999999886555 788899999999999999999999999999999999997643
No 64
>KOG0113|consensus
Probab=99.42 E-value=7e-13 Score=91.38 Aligned_cols=70 Identities=19% Similarity=0.349 Sum_probs=65.6
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEee
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYA 71 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~ 71 (136)
|||+-|+...+ |+..|+.||+|..|.+++ .+|+++|||||+|.+.-+...|.+..+|..|.|+.|-|..-
T Consensus 104 LFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 104 LFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred eeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 78999998887 999999999999999999 89999999999999999999999999999999999988653
No 65
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.41 E-value=2.8e-12 Score=71.83 Aligned_cols=69 Identities=28% Similarity=0.477 Sum_probs=62.6
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc-cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEe
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI-STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY 70 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~-~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~ 70 (136)
|++++||...+ ++++|+.+|.+..+.+.. ..+.++|+|||+|.+.++|..|++.+++..+.|+.+.+.+
T Consensus 2 i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 2 LFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred EEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 68999999887 899999999999999988 5557899999999999999999999999999999988753
No 66
>KOG0114|consensus
Probab=99.40 E-value=2e-12 Score=76.35 Aligned_cols=73 Identities=25% Similarity=0.306 Sum_probs=65.0
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSS 75 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~ 75 (136)
|||.|||..+| ..++|.+||.|..|++- .+...+|-|||.|++..+|..|+..|+|..+.++.+.+.+.++..
T Consensus 21 LyirNLp~~ITseemydlFGkyg~IrQIRiG-~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~~~ 96 (124)
T KOG0114|consen 21 LYIRNLPFKITSEEMYDLFGKYGTIRQIRIG-NTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQPED 96 (124)
T ss_pred EEEecCCccccHHHHHHHhhcccceEEEEec-CccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCHHH
Confidence 89999999999 78899999999877765 466678999999999999999999999999999999998877643
No 67
>KOG0130|consensus
Probab=99.40 E-value=9.7e-13 Score=81.22 Aligned_cols=73 Identities=21% Similarity=0.344 Sum_probs=67.6
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPS 74 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~ 74 (136)
|||.++.++.+ +.+.|.-||+|+++.+-. .+|-.||||+|+|.+...|++|+.++||..+.|+.+.|.|+..+
T Consensus 75 i~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv~ 152 (170)
T KOG0130|consen 75 IFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFVK 152 (170)
T ss_pred EEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEec
Confidence 78999998888 899999999999998877 88999999999999999999999999999999999999887544
No 68
>KOG0108|consensus
Probab=99.38 E-value=1.2e-12 Score=96.16 Aligned_cols=75 Identities=23% Similarity=0.394 Sum_probs=70.5
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~ 76 (136)
|||+|+|.+++ |.++|+..|+|.+++++. .+|+++||||++|.+.++|..|+..|||.++.|++|++.++...+.
T Consensus 21 v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~~~ 100 (435)
T KOG0108|consen 21 VFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNRKN 100 (435)
T ss_pred eEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccccch
Confidence 79999999998 999999999999999999 8999999999999999999999999999999999999998775543
No 69
>KOG0117|consensus
Probab=99.36 E-value=2.3e-12 Score=93.06 Aligned_cols=72 Identities=31% Similarity=0.403 Sum_probs=66.2
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESI 78 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~~~ 78 (136)
|||.||+.++| |+++|++||.|..|+.++ -||||.|.++++|-+|++.+||..|.|..|.|..++|..+..
T Consensus 262 LYVRNL~~~tTeE~lk~~F~~~G~veRVkk~r------DYaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k~k 335 (506)
T KOG0117|consen 262 LYVRNLMESTTEETLKKLFNEFGKVERVKKPR------DYAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDKKK 335 (506)
T ss_pred eeeeccchhhhHHHHHHHHHhccceEEeeccc------ceeEEeecchHHHHHHHHHhcCceecCceEEEEecCChhhhc
Confidence 89999999999 999999999999998664 599999999999999999999999999999999999876543
Q ss_pred C
Q psy6353 79 K 79 (136)
Q Consensus 79 ~ 79 (136)
.
T Consensus 336 ~ 336 (506)
T KOG0117|consen 336 K 336 (506)
T ss_pred c
Confidence 3
No 70
>KOG0124|consensus
Probab=99.32 E-value=2.4e-11 Score=86.23 Aligned_cols=71 Identities=20% Similarity=0.396 Sum_probs=61.8
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR 72 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~ 72 (136)
+||..+....+ |+..|+-||+|..|.+.+ ..+..|||||++|.+..+.+.|+..||=+.++|+.|++..+.
T Consensus 213 iYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 213 IYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred EEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccccc
Confidence 57766665555 999999999999999999 556689999999999999999999999999999999996543
No 71
>KOG0120|consensus
Probab=99.32 E-value=2.5e-12 Score=95.28 Aligned_cols=134 Identities=19% Similarity=0.312 Sum_probs=100.8
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~ 76 (136)
+|+++||..++ ++++.+.||++....++. .+|.++||||.+|.++...+.|+..+||..++++++.+..+.+...
T Consensus 292 i~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~ 371 (500)
T KOG0120|consen 292 IFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGAS 371 (500)
T ss_pred hhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccch
Confidence 47889998887 899999999999998888 6789999999999999999999999999999999999876543221
Q ss_pred C------------------------CCCceEEEcCCC--CCC-C-------HHHHHHhhcCCCceEEEEEEeC-CCCC--
Q psy6353 77 S------------------------IKGANLYVSGLP--KHM-S-------QQELESLFSPYGRIITSRILCD-NLAT-- 119 (136)
Q Consensus 77 ~------------------------~~~~~l~v~nl~--~~~-t-------~~~l~~~f~~~G~v~~~~i~~~-~~~~-- 119 (136)
. .....|...|+= ..+ + -++++.-+.+||.|..|.++++ ....
T Consensus 372 ~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~ 451 (500)
T KOG0120|consen 372 NANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPV 451 (500)
T ss_pred hccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcC
Confidence 1 111222222221 111 1 1467788899999999999998 3222
Q ss_pred -CccceEeecCcccccc
Q psy6353 120 -ENGKYYSGLGGRERLR 135 (136)
Q Consensus 120 -~~~~~fv~f~~~e~~~ 135 (136)
..|.-||+|.+.|++.
T Consensus 452 ~G~GkVFVefas~ed~q 468 (500)
T KOG0120|consen 452 PGTGKVFVEFADTEDSQ 468 (500)
T ss_pred CCcccEEEEecChHHHH
Confidence 2255799999998764
No 72
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.31 E-value=3.4e-12 Score=71.71 Aligned_cols=53 Identities=21% Similarity=0.497 Sum_probs=45.9
Q ss_pred EEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 83 LYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 83 l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
|+|+|||+++++++|.++|+.||.|..+.+..++.+...+.|||+|.+.|+|.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~ 53 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAK 53 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHH
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHH
Confidence 78999999999999999999999999999999987444466999999999875
No 73
>KOG1548|consensus
Probab=99.30 E-value=2.9e-11 Score=84.96 Aligned_cols=131 Identities=15% Similarity=0.169 Sum_probs=103.8
Q ss_pred eeecCCChhhh---HHHHhccCCCeeE--------EEEEc-cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEE
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEI--------CVFLI-STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVS 69 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~--------~~~~~-~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~ 69 (136)
|||+|||..+| ..++|+++|-|.. |++-+ ..|+.||=|.+.|...+++..|+.-|++..+.|+.|+|.
T Consensus 137 VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~rVe 216 (382)
T KOG1548|consen 137 VYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKKLRVE 216 (382)
T ss_pred EEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcEEEEe
Confidence 89999999999 7788999997643 77777 889999999999999999999999999999999999997
Q ss_pred eeCCCCC--------------------------------------CCCCceEEEcCCC----CCCC-------HHHHHHh
Q psy6353 70 YARPSSE--------------------------------------SIKGANLYVSGLP----KHMS-------QQELESL 100 (136)
Q Consensus 70 ~~~~~~~--------------------------------------~~~~~~l~v~nl~----~~~t-------~~~l~~~ 100 (136)
.++-... ....++|.++|+= ...+ +++|.+-
T Consensus 217 rAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~ee 296 (382)
T KOG1548|consen 217 RAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEE 296 (382)
T ss_pred hhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHH
Confidence 6541110 1235678888872 1223 4677888
Q ss_pred hcCCCceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 101 FSPYGRIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 101 f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
+.+||.|..+.+.-.+ ..|.+-|.|.+.|+|.
T Consensus 297 c~K~G~v~~vvv~d~h---PdGvvtV~f~n~eeA~ 328 (382)
T KOG1548|consen 297 CEKFGQVRKVVVYDRH---PDGVVTVSFRNNEEAD 328 (382)
T ss_pred HHHhCCcceEEEeccC---CCceeEEEeCChHHHH
Confidence 9999999999888543 3355789999999873
No 74
>KOG0125|consensus
Probab=99.29 E-value=3.6e-12 Score=88.95 Aligned_cols=80 Identities=19% Similarity=0.333 Sum_probs=65.6
Q ss_pred HcCceeCCceEEEEeeCCCCCCCCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 56 LNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 56 ~~~~~~~g~~l~v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
-++....|..+....+..........+|+|+|||+...+.||+.+|.+||+|.+|.|+.+. .|++|++||.|++.+++.
T Consensus 72 ~~~~~t~g~~~~~~~st~s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE-RGSKGFGFVTmen~~dad 150 (376)
T KOG0125|consen 72 SNGAPTDGQPIQTQPSTNSSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE-RGSKGFGFVTMENPADAD 150 (376)
T ss_pred cCCCCCCCCccccCCCCcCCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc-CCCCccceEEecChhhHH
Confidence 3455556666666655555555677899999999999999999999999999999999876 556699999999999886
Q ss_pred C
Q psy6353 136 R 136 (136)
Q Consensus 136 ~ 136 (136)
|
T Consensus 151 R 151 (376)
T KOG0125|consen 151 R 151 (376)
T ss_pred H
Confidence 5
No 75
>KOG0149|consensus
Probab=99.28 E-value=4.2e-12 Score=85.02 Aligned_cols=58 Identities=17% Similarity=0.345 Sum_probs=54.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccc-eEeecCccccccC
Q psy6353 79 KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGK-YYSGLGGRERLRR 136 (136)
Q Consensus 79 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~-~fv~f~~~e~~~~ 136 (136)
.-++|||++|+-.++.+.|++.|.+||+|++..++.|+.+|++++ +||.|.+.|++.|
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~r 69 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATR 69 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHH
Confidence 457899999999999999999999999999999999999999966 8999999999876
No 76
>KOG0146|consensus
Probab=99.28 E-value=5.2e-12 Score=86.25 Aligned_cols=75 Identities=28% Similarity=0.502 Sum_probs=68.4
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~ 76 (136)
|||=.||.++. |-.+|-.||-|.+.++.. .+++||+||||.|.++.+|+.||.+|||+.|+-++|+|..-+|+..
T Consensus 288 lFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKRPkda 367 (371)
T KOG0146|consen 288 LFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDA 367 (371)
T ss_pred EEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhcCcccc
Confidence 68888999987 889999999998887766 8999999999999999999999999999999999999988877754
No 77
>KOG4208|consensus
Probab=99.26 E-value=2.1e-11 Score=80.23 Aligned_cols=73 Identities=23% Similarity=0.285 Sum_probs=62.5
Q ss_pred eeecCCChhhh---HHHHhccC-CCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGF-SDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPS 74 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~-G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~ 74 (136)
+|+..+|..+- +..+|.++ |.+...++-| .||.|||||||+|.+.+.|..|.+.||+..+.++-|.|..-.|.
T Consensus 52 ~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmppe 130 (214)
T KOG4208|consen 52 VYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMPPE 130 (214)
T ss_pred eeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeCch
Confidence 56667776554 77788887 7888888877 89999999999999999999999999999999999999876654
No 78
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.26 E-value=1e-11 Score=85.26 Aligned_cols=55 Identities=15% Similarity=0.198 Sum_probs=49.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 79 KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 79 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
..++|||+|||+.+|+++|+++|+.||+|.+|.|+++.. .++.+||+|.++++++
T Consensus 3 ~~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~--~~GfAFVtF~d~eaAe 57 (260)
T PLN03120 3 QVRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE--RSQIAYVTFKDPQGAE 57 (260)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC--CCCEEEEEeCcHHHHH
Confidence 357899999999999999999999999999999999874 3578999999998874
No 79
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.25 E-value=1.3e-11 Score=83.57 Aligned_cols=55 Identities=18% Similarity=0.215 Sum_probs=49.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 79 KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 79 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
.+.+|+|+||++.+|+++|+++|+.||+|.+|.|++|..+ .+.+||+|.++++++
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et--~gfAfVtF~d~~aae 58 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEY--ACTAYVTFKDAYALE 58 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCc--ceEEEEEECCHHHHH
Confidence 5689999999999999999999999999999999998433 367999999998764
No 80
>KOG0122|consensus
Probab=99.24 E-value=1.1e-11 Score=83.49 Aligned_cols=57 Identities=23% Similarity=0.387 Sum_probs=53.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccc-eEeecCcccccc
Q psy6353 79 KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGK-YYSGLGGRERLR 135 (136)
Q Consensus 79 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~-~fv~f~~~e~~~ 135 (136)
..++|.|.||+.++++.+|.++|.+||.|..+.|.+|+.+|.++| |||.|.++|+|-
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~ 245 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAA 245 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHH
Confidence 567899999999999999999999999999999999999999955 999999999874
No 81
>KOG0110|consensus
Probab=99.23 E-value=2.5e-11 Score=91.91 Aligned_cols=130 Identities=18% Similarity=0.257 Sum_probs=101.2
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeC------
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR------ 72 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~------ 72 (136)
++++|||.... +.++|..||+|..+.++. .|. -+.|.|.++.+|..|...+....+...++.+.|+.
T Consensus 388 il~kNlpa~t~~~elt~~F~~fG~i~rvllp~-~G~---~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP~dvf~~ 463 (725)
T KOG0110|consen 388 ILVKNLPAGTLSEELTEAFLRFGEIGRVLLPP-GGT---GAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAPEDVFTE 463 (725)
T ss_pred eeeccCccccccHHHHHHhhcccccceeecCc-ccc---eeeeeecCccchHHHHHHhchhhhccCccccccChhhhccC
Confidence 57899998877 899999999999996653 222 28999999999999999998877777776665432
Q ss_pred -CCCC-----------------------------C--------------CCCceEEEcCCCCCCCHHHHHHhhcCCCceE
Q psy6353 73 -PSSE-----------------------------S--------------IKGANLYVSGLPKHMSQQELESLFSPYGRII 108 (136)
Q Consensus 73 -~~~~-----------------------------~--------------~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~ 108 (136)
|+.. . ...++||++|++...|.+++...|...|.|.
T Consensus 464 ~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k~G~Vl 543 (725)
T KOG0110|consen 464 DPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLFSKQGTVL 543 (725)
T ss_pred CccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHHHhcCeEE
Confidence 1000 0 1123499999999999999999999999999
Q ss_pred EEEEEeCCCCC----CccceEeecCcccccc
Q psy6353 109 TSRILCDNLAT----ENGKYYSGLGGRERLR 135 (136)
Q Consensus 109 ~~~i~~~~~~~----~~~~~fv~f~~~e~~~ 135 (136)
++.|...++.- +.|.+||+|.+.|.|+
T Consensus 544 S~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~ 574 (725)
T KOG0110|consen 544 SIEISKKKDPANKYLSMGFGFVEFAKPESAQ 574 (725)
T ss_pred EEEEeccccccccccccceeEEEecCHHHHH
Confidence 99887665432 3377999999999775
No 82
>KOG0131|consensus
Probab=99.21 E-value=2.6e-11 Score=78.46 Aligned_cols=74 Identities=27% Similarity=0.376 Sum_probs=67.0
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEE-EEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEIC-VFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSS 75 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~-~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~ 75 (136)
+|++||+.++. |.+.|+.||.+... .+++ .+|.++|+||+.|.+.+.+++|+..+||..+.++++.+.++..+.
T Consensus 99 lfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k~~ 178 (203)
T KOG0131|consen 99 LFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAFKKD 178 (203)
T ss_pred ccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEEecC
Confidence 68999999888 99999999998663 7777 789999999999999999999999999999999999999887554
No 83
>KOG4454|consensus
Probab=99.15 E-value=1.3e-11 Score=81.96 Aligned_cols=116 Identities=15% Similarity=0.116 Sum_probs=94.1
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc-cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI-STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSES 77 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~-~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~~ 77 (136)
|||.|+...++ |.++|-+-|+|..+.|+. ..+..| ||||.|.++.++..|++-+||..+.++++++.+-.-..
T Consensus 12 l~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~G~s-- 88 (267)
T KOG4454|consen 12 LLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRCGNS-- 88 (267)
T ss_pred HHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhcccccCCC--
Confidence 68899998888 899999999999999988 667777 99999999999999999999999999998876432211
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEee
Q psy6353 78 IKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSG 127 (136)
Q Consensus 78 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~ 127 (136)
... +....+++.+...|+.-|.+..+++.++.++..+.+.++.
T Consensus 89 --hap-----ld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~ 131 (267)
T KOG4454|consen 89 --HAP-----LDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVT 131 (267)
T ss_pred --cch-----hhhhcchhhheeeecccCCCCCccccccccCCccCccchh
Confidence 011 4566788888999999999999999998875454555554
No 84
>smart00362 RRM_2 RNA recognition motif.
Probab=99.10 E-value=1.8e-10 Score=63.98 Aligned_cols=53 Identities=26% Similarity=0.518 Sum_probs=47.3
Q ss_pred eEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 82 NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 82 ~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
+|+|+|||..+++++|+++|.+||++..+.+..++ ....+.+||+|.+.+++.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~-~~~~~~~~v~f~~~~~a~ 53 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT-GKSKGFAFVEFESEEDAE 53 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-CCCCceEEEEeCCHHHHH
Confidence 58999999999999999999999999999999887 444477999999998874
No 85
>KOG4212|consensus
Probab=99.08 E-value=1.1e-09 Score=79.53 Aligned_cols=68 Identities=22% Similarity=0.326 Sum_probs=56.1
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc-cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEE
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI-STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVS 69 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~-~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~ 69 (136)
+|+.||...+. |.+.|.-.|++..+.+-- ..|.++|++.++|..+-.|-.|+..+++.-+..++..+.
T Consensus 218 ~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~g~~~~~~~~R 289 (608)
T KOG4212|consen 218 VFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQGLFDRRMTVR 289 (608)
T ss_pred eeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccCCCccccceee
Confidence 67888988776 899999999998887666 778999999999999999999999888755555555443
No 86
>KOG0126|consensus
Probab=99.06 E-value=9.3e-11 Score=75.94 Aligned_cols=55 Identities=22% Similarity=0.504 Sum_probs=50.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCc-cceEeecCcccc
Q psy6353 79 KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATEN-GKYYSGLGGRER 133 (136)
Q Consensus 79 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~-~~~fv~f~~~e~ 133 (136)
.++-|||+|||..+|+.||--.|++||+|+.+++++|..||.+ |++|+.+++..+
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRS 89 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRS 89 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccc
Confidence 5678999999999999999999999999999999999999999 559999988653
No 87
>KOG0114|consensus
Probab=99.05 E-value=3.8e-10 Score=66.81 Aligned_cols=56 Identities=23% Similarity=0.357 Sum_probs=49.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCccccccC
Q psy6353 79 KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLRR 136 (136)
Q Consensus 79 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~~ 136 (136)
-.+-|||+|||.++|.++..++|.+||.|..++|...+ +.+|-|||.+++-++||+
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k--~TrGTAFVVYedi~dAk~ 72 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK--ETRGTAFVVYEDIFDAKK 72 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCcc--CcCceEEEEehHhhhHHH
Confidence 45789999999999999999999999999999998765 455669999999988864
No 88
>KOG0121|consensus
Probab=99.03 E-value=2.6e-10 Score=69.93 Aligned_cols=57 Identities=21% Similarity=0.296 Sum_probs=51.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCc-cceEeecCcccccc
Q psy6353 79 KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATEN-GKYYSGLGGRERLR 135 (136)
Q Consensus 79 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~-~~~fv~f~~~e~~~ 135 (136)
.+++|||+||+..++|++|.++|+.+|+|..+.+-.|..+... |+.||+|-++++|.
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~ 92 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAE 92 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHH
Confidence 5689999999999999999999999999999999999877766 66899999998864
No 89
>KOG0129|consensus
Probab=99.01 E-value=1.1e-08 Score=75.49 Aligned_cols=130 Identities=15% Similarity=0.199 Sum_probs=93.4
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc-----cCCCcee---eEEEEcCCHHHHHHHHHHHcC----cee-----
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI-----STAQSLG---YGFVNYHRPEDAEKAINTLNG----LRL----- 61 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~-----~~~~~kg---~~fv~f~~~~~a~~a~~~~~~----~~~----- 61 (136)
||++.||..++ |...|..||.+ .+.++. ..-.++| |+|+-|+++.+++.-+.+... ..|
T Consensus 262 VFvGGlp~dise~~i~~~F~~FGs~-~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~~yf~vss~ 340 (520)
T KOG0129|consen 262 VFVGGLPWDITEAQINASFGQFGSV-KVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGNYYFKVSSP 340 (520)
T ss_pred eeecCCCccccHHHHHhhcccccce-EeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccceEEEEecC
Confidence 79999999999 78889999986 566663 2233567 999999999999887765422 111
Q ss_pred --CCceEEEEeeCCCC---------CCCCCceEEEcCCCCCCCHHHHHHhhc-CCCceEEEEEEeCCCCCCc-cceEeec
Q psy6353 62 --QNKTIKVSYARPSS---------ESIKGANLYVSGLPKHMSQQELESLFS-PYGRIITSRILCDNLATEN-GKYYSGL 128 (136)
Q Consensus 62 --~g~~l~v~~~~~~~---------~~~~~~~l~v~nl~~~~t~~~l~~~f~-~~G~v~~~~i~~~~~~~~~-~~~fv~f 128 (136)
..+.++|..+.... .-...+|+||++||.-++.++|..+|. -||.|..+.|-.|+.-+-. |.+=|.|
T Consensus 341 ~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtF 420 (520)
T KOG0129|consen 341 TIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTF 420 (520)
T ss_pred cccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeee
Confidence 12234443332211 124678999999999999999999999 8999999999999543333 4467777
Q ss_pred Cccc
Q psy6353 129 GGRE 132 (136)
Q Consensus 129 ~~~e 132 (136)
.+..
T Consensus 421 snqq 424 (520)
T KOG0129|consen 421 SNQQ 424 (520)
T ss_pred cccH
Confidence 6653
No 90
>KOG0415|consensus
Probab=99.00 E-value=7.5e-10 Score=78.43 Aligned_cols=72 Identities=22% Similarity=0.460 Sum_probs=65.5
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARP 73 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~ 73 (136)
|||=-|..-.+ |+-+|+.||+|.+|.+++ .+|.+..||||+|.+.+++++|.-+|++..|..+.|.|.++++
T Consensus 242 LFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQS 318 (479)
T KOG0415|consen 242 LFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQS 318 (479)
T ss_pred EEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehhhh
Confidence 56666766666 899999999999999999 8999999999999999999999999999999999999988764
No 91
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.98 E-value=1.1e-09 Score=61.03 Aligned_cols=54 Identities=26% Similarity=0.538 Sum_probs=49.2
Q ss_pred eEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 82 NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 82 ~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
+|+|+|||..+++++|+++|+.+|.|..+.+..++.+...+.+||+|.+.|++.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~ 54 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAE 54 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHH
Confidence 489999999999999999999999999999999887766678999999999874
No 92
>KOG4661|consensus
Probab=98.97 E-value=1.5e-09 Score=81.17 Aligned_cols=73 Identities=18% Similarity=0.276 Sum_probs=64.0
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPS 74 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~ 74 (136)
|+|+.|+.... |+.+|++||+|...+++. .+...++|+||++.+.++|-+||.-||...++|+.|.|..++..
T Consensus 408 lWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKNE 485 (940)
T KOG4661|consen 408 LWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKNE 485 (940)
T ss_pred eeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecccC
Confidence 57777776554 999999999999999988 55667999999999999999999999999999999999877643
No 93
>PLN03213 repressor of silencing 3; Provisional
Probab=98.96 E-value=1.2e-09 Score=80.54 Aligned_cols=51 Identities=22% Similarity=0.338 Sum_probs=46.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCcc
Q psy6353 78 IKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGR 131 (136)
Q Consensus 78 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~ 131 (136)
..+.+|||+||+..+++++|+..|++||.|..+.|++. +| +++|||+|.+.
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE--TG-RGFAFVEMssd 58 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT--KG-RSFAYIDFSPS 58 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc--cC-CceEEEEecCC
Confidence 45688999999999999999999999999999999954 56 78999999987
No 94
>KOG0153|consensus
Probab=98.94 E-value=4.3e-09 Score=74.29 Aligned_cols=68 Identities=25% Similarity=0.374 Sum_probs=60.1
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHH-HcCceeCCceEEEEeeCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINT-LNGLRLQNKTIKVSYARP 73 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~-~~~~~~~g~~l~v~~~~~ 73 (136)
|||++|.+.++ |++.|.+||+|.++.+.. .+++|||+|.+.+.|+.|..+ +|...|.|++|++.|+.+
T Consensus 231 LyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~----~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 231 LYIGGLNDEVLEQDIRDHFYQYGEIRSIRILP----RKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred EEecccccchhHHHHHHHHhhcCCeeeEEeec----ccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 79999987777 999999999999998875 456999999999999999875 556778999999999988
No 95
>smart00360 RRM RNA recognition motif.
Probab=98.94 E-value=1.4e-09 Score=60.14 Aligned_cols=51 Identities=27% Similarity=0.512 Sum_probs=45.2
Q ss_pred EcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCc-cceEeecCcccccc
Q psy6353 85 VSGLPKHMSQQELESLFSPYGRIITSRILCDNLATEN-GKYYSGLGGRERLR 135 (136)
Q Consensus 85 v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~-~~~fv~f~~~e~~~ 135 (136)
|+|||..+++++|+++|++||.|..+.+..++.++.. +.+||+|.+.++|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~ 52 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAE 52 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHH
Confidence 5799999999999999999999999999998865555 56999999998874
No 96
>KOG0109|consensus
Probab=98.93 E-value=1.8e-09 Score=74.69 Aligned_cols=68 Identities=22% Similarity=0.326 Sum_probs=62.4
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSS 75 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~ 75 (136)
++|+|+....+ +++.|++||++.+|.+++ +|+||.|.-.++|..|+..|++.++.|++++|..+.++-
T Consensus 81 l~vgNis~tctn~ElRa~fe~ygpviecdivk------dy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsrl 151 (346)
T KOG0109|consen 81 LHVGNISPTCTNQELRAKFEKYGPVIECDIVK------DYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSRL 151 (346)
T ss_pred cccCCCCccccCHHHhhhhcccCCceeeeeec------ceeEEEEeeccchHHHHhcccccccccceeeeeeecccc
Confidence 67899998888 999999999999999986 899999999999999999999999999999998776543
No 97
>KOG4205|consensus
Probab=98.91 E-value=1.6e-09 Score=76.76 Aligned_cols=106 Identities=18% Similarity=0.226 Sum_probs=84.2
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~ 76 (136)
+|++.||..++ ++++|++||.|..+.++. .+.+++||+||+|.+.+.++.++. ...+.+.++++.|+.+.|+..
T Consensus 100 iFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~pk~~ 178 (311)
T KOG4205|consen 100 IFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAIPKEV 178 (311)
T ss_pred EEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeeccchhh
Confidence 68999999998 999999999999988888 788899999999999999999988 468999999999999998765
Q ss_pred CCCCc-----eEEEcCCCCCCCHHHHHHhhcCCCceE
Q psy6353 77 SIKGA-----NLYVSGLPKHMSQQELESLFSPYGRII 108 (136)
Q Consensus 77 ~~~~~-----~l~v~nl~~~~t~~~l~~~f~~~G~v~ 108 (136)
..... ...-.|++...+.-.|...+..||.+.
T Consensus 179 ~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~g~~~~~ 215 (311)
T KOG4205|consen 179 MQSTKSSVSTRGKGNNLGNGRTGFFLKKYFKGYGPVG 215 (311)
T ss_pred ccccccccccccccccccccccccccchhccccCccc
Confidence 43221 122224555555556677777777654
No 98
>KOG0128|consensus
Probab=98.90 E-value=2.7e-10 Score=87.96 Aligned_cols=116 Identities=17% Similarity=0.247 Sum_probs=98.0
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEE-c-cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFL-I-STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~-~-~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~ 76 (136)
+|++||+..+. |...|..+|.+..+.+. . ..++.+|+|++.|..++++.+|+....+. +.|
T Consensus 670 ~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~-~~g------------- 735 (881)
T KOG0128|consen 670 IFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSC-FFG------------- 735 (881)
T ss_pred HHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhh-hhh-------------
Confidence 47889998887 88889999988777655 3 88999999999999999999999854333 333
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCccccc
Q psy6353 77 SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERL 134 (136)
Q Consensus 77 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~ 134 (136)
...++|+|.|+..|.+.++.+++..|.+.+.+++....+...|.+||.|.++-++
T Consensus 736 ---K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~ 790 (881)
T KOG0128|consen 736 ---KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADA 790 (881)
T ss_pred ---hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchh
Confidence 2458999999999999999999999999999999888877778899999987654
No 99
>KOG0533|consensus
Probab=98.90 E-value=6.3e-09 Score=71.27 Aligned_cols=73 Identities=22% Similarity=0.351 Sum_probs=66.5
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc-cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI-STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPS 74 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~-~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~ 74 (136)
|+|.|||.-++ |+++|..||.+..+-+.. ..|.+.|.|-|.|...++|..|++++||..+.|+++++....+.
T Consensus 86 v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~~ 162 (243)
T KOG0533|consen 86 VNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISSP 162 (243)
T ss_pred eeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecCc
Confidence 68999999988 999999999888888887 89999999999999999999999999999999999998765543
No 100
>KOG0132|consensus
Probab=98.88 E-value=5.2e-09 Score=80.44 Aligned_cols=71 Identities=24% Similarity=0.416 Sum_probs=65.8
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~ 76 (136)
|||+.|+.+++ |.++|+.||.|.+|.++. ++|||||.+...++|.+|+.+|+...+.++.|++.|+..+.-
T Consensus 424 LwvG~i~k~v~e~dL~~~feefGeiqSi~li~----~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~ 497 (894)
T KOG0132|consen 424 LWVGGIPKNVTEQDLANLFEEFGEIQSIILIP----PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKGP 497 (894)
T ss_pred eeeccccchhhHHHHHHHHHhcccceeEeecc----CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCCc
Confidence 79999999998 999999999999998875 889999999999999999999999999999999999876543
No 101
>KOG1365|consensus
Probab=98.86 E-value=8.9e-10 Score=78.76 Aligned_cols=132 Identities=17% Similarity=0.207 Sum_probs=98.0
Q ss_pred eecCCChhhhHHHHhccCC-------CeeEEEEEc-cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCC-
Q psy6353 3 YQTLLNKLFTYEKVHLGFS-------DAEICVFLI-STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARP- 73 (136)
Q Consensus 3 ~v~nl~~~~~l~~~f~~~G-------~v~~~~~~~-~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~- 73 (136)
-...||...+-.+....|| ....+..+. ..|+..|=||+.|..+++|+.|+.+ |...++.|.|.+..+..
T Consensus 165 RmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIElFRSTaa 243 (508)
T KOG1365|consen 165 RMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIELFRSTAA 243 (508)
T ss_pred EecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHHHHHhHH
Confidence 3568998888444444443 445566666 7899999999999999999999984 55556666555432110
Q ss_pred ------------------------------CCCCCCCceEEEcCCCCCCCHHHHHHhhcCCCc-eEE--EEEEeCCCCCC
Q psy6353 74 ------------------------------SSESIKGANLYVSGLPKHMSQQELESLFSPYGR-IIT--SRILCDNLATE 120 (136)
Q Consensus 74 ------------------------------~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~-v~~--~~i~~~~~~~~ 120 (136)
.........|.+++||..++.+||-++|..|-. |.. +.++.+..+..
T Consensus 244 Evqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrP 323 (508)
T KOG1365|consen 244 EVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRP 323 (508)
T ss_pred HHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCc
Confidence 001123567999999999999999999999864 333 78888888888
Q ss_pred ccceEeecCcccccc
Q psy6353 121 NGKYYSGLGGRERLR 135 (136)
Q Consensus 121 ~~~~fv~f~~~e~~~ 135 (136)
+|.||++|.++|+++
T Consensus 324 SGeAFIqm~nae~a~ 338 (508)
T KOG1365|consen 324 SGEAFIQMRNAERAR 338 (508)
T ss_pred ChhhhhhhhhhHHHH
Confidence 899999999999875
No 102
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.85 E-value=4.7e-09 Score=72.49 Aligned_cols=56 Identities=21% Similarity=0.469 Sum_probs=50.9
Q ss_pred CceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCc-cceEeecCcccccc
Q psy6353 80 GANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATEN-GKYYSGLGGRERLR 135 (136)
Q Consensus 80 ~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~-~~~fv~f~~~e~~~ 135 (136)
..+|||+|||..+++++|.++|.+||.|..+.+..+..++.. +.|||+|.+.+.+.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~ 171 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAE 171 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHH
Confidence 499999999999999999999999999999999999866666 56999999998764
No 103
>KOG0113|consensus
Probab=98.84 E-value=6.9e-09 Score=71.98 Aligned_cols=58 Identities=19% Similarity=0.287 Sum_probs=53.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccc-eEeecCcccccc
Q psy6353 78 IKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGK-YYSGLGGRERLR 135 (136)
Q Consensus 78 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~-~fv~f~~~e~~~ 135 (136)
.+-.||||.-|+.+++|..|+..|..||+|..+.|+.|..+|++++ |||+|+++-+|.
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~ 157 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMK 157 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHH
Confidence 4568999999999999999999999999999999999999999855 899999987764
No 104
>KOG0107|consensus
Probab=98.84 E-value=7.2e-09 Score=66.88 Aligned_cols=53 Identities=21% Similarity=0.361 Sum_probs=46.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 79 KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 79 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
..++|||+||+..+++.+|...|..||++.++-|.++ ..++|||+|++..+|+
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn----PPGfAFVEFed~RDA~ 61 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN----PPGFAFVEFEDPRDAE 61 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec----CCCceEEeccCcccHH
Confidence 4688999999999999999999999999999888874 4477999999987764
No 105
>KOG0226|consensus
Probab=98.82 E-value=1.9e-09 Score=73.20 Aligned_cols=73 Identities=22% Similarity=0.380 Sum_probs=64.8
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPS 74 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~ 74 (136)
||.+.|..+++ |-..|.+|-.....++++ .+|+++||+||.|.+..++..|+.+|||..++.++|++..+..+
T Consensus 193 IfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS~wk 270 (290)
T KOG0226|consen 193 IFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKSEWK 270 (290)
T ss_pred eecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhhhHH
Confidence 57778876676 788899999998889999 89999999999999999999999999999999999998765544
No 106
>KOG1456|consensus
Probab=98.82 E-value=1.5e-07 Score=67.39 Aligned_cols=118 Identities=11% Similarity=0.127 Sum_probs=95.0
Q ss_pred HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCC----------------
Q psy6353 13 YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE---------------- 76 (136)
Q Consensus 13 l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~---------------- 76 (136)
|-.+|..||.|..|+.++ ...|-|.|++.|....++|+.-||+..+.|.+|.++.++..--
T Consensus 305 lFNl~ClYGNV~rvkFmk---Tk~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~~v~~~~pflLpDgSpSfK 381 (494)
T KOG1456|consen 305 LFNLFCLYGNVERVKFMK---TKPGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQNFVSPVQPFLLPDGSPSFK 381 (494)
T ss_pred hhhhhhhcCceeeEEEee---cccceeEEEcCcHHHHHHHHHHhccCccccceEEEeeccccccccCCceecCCCCcchh
Confidence 678999999999999998 3345699999999999999999999999999999987653210
Q ss_pred ---------------------CCCCceEEEcCCCCCCCHHHHHHhhcCCCc-eEEEEEEeCCCCCCccceEeecCccccc
Q psy6353 77 ---------------------SIKGANLYVSGLPKHMSQQELESLFSPYGR-IITSRILCDNLATENGKYYSGLGGRERL 134 (136)
Q Consensus 77 ---------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~-v~~~~i~~~~~~~~~~~~fv~f~~~e~~ 134 (136)
..++..|..-|.|..+||+++.++|..-+. ..++++..-+ +-++-.+-.+|++.++|
T Consensus 382 dys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~svkvFp~k-serSssGllEfe~~s~A 460 (494)
T KOG1456|consen 382 DYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTSVKVFPLK-SERSSSGLLEFENKSDA 460 (494)
T ss_pred hcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcceEEeeccc-ccccccceeeeehHHHH
Confidence 134578999999999999999999998764 3466776554 44446688999988765
No 107
>KOG0151|consensus
Probab=98.74 E-value=2.5e-08 Score=76.24 Aligned_cols=72 Identities=19% Similarity=0.337 Sum_probs=64.5
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc-----cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI-----STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARP 73 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~-----~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~ 73 (136)
||++||+..++ |-..|..||++.+++++. ...+.+-||||.|.+..+|++|+..|+|..+.+.++++.|+++
T Consensus 177 lyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~gWgk~ 256 (877)
T KOG0151|consen 177 LYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLGWGKA 256 (877)
T ss_pred eeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeeccccc
Confidence 79999999998 778889999999998887 3355677999999999999999999999999999999999853
No 108
>KOG0105|consensus
Probab=98.74 E-value=1.8e-08 Score=65.73 Aligned_cols=55 Identities=22% Similarity=0.381 Sum_probs=46.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 79 KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 79 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
..++|||+|||.++.+.+|.++|-+||.|..+.+-.. .+...++||+|++..+|.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r--~g~ppfafVeFEd~RDAe 59 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR--PGPPPFAFVEFEDPRDAE 59 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC--CCCCCeeEEEecCccchh
Confidence 5688999999999999999999999999999877543 244578999999987653
No 109
>KOG0116|consensus
Probab=98.73 E-value=1.7e-08 Score=74.24 Aligned_cols=71 Identities=21% Similarity=0.345 Sum_probs=61.6
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc-c-CCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI-S-TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARP 73 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~-~-~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~ 73 (136)
|||.|||...+ |++.|++||+|....|.. . .+...+||||+|.+.+.++.|+.+ +-..++++++.|+--.+
T Consensus 291 i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 291 IFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRP 366 (419)
T ss_pred eEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEeccc
Confidence 79999999998 999999999999988777 3 455559999999999999999996 48889999999975544
No 110
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.72 E-value=5.3e-08 Score=55.65 Aligned_cols=64 Identities=19% Similarity=0.229 Sum_probs=45.9
Q ss_pred CeeecCCChhhh-------HHHHhccCC-CeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeC
Q psy6353 1 MVYQTLLNKLFT-------YEKVHLGFS-DAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR 72 (136)
Q Consensus 1 ~v~v~nl~~~~~-------l~~~f~~~G-~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~ 72 (136)
+|||.|||...+ |+.++.-+| +|.++ +.+-|.|.|.+++.|++|.+.|+|-.+.|++|.+.+..
T Consensus 4 ~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v--------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~ 75 (90)
T PF11608_consen 4 LLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV--------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSP 75 (90)
T ss_dssp EEEEES--TTS-HHHHHHHHHHHHHTTT--EEE----------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS-
T ss_pred EEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE--------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcC
Confidence 589999998765 888888887 55554 13679999999999999999999999999999998764
No 111
>KOG4211|consensus
Probab=98.72 E-value=9.8e-08 Score=70.26 Aligned_cols=132 Identities=17% Similarity=0.199 Sum_probs=99.2
Q ss_pred eeecCCChhhh---HHHHhccCCCeeE-EEEEc-cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCC---
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEI-CVFLI-STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARP--- 73 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~-~~~~~-~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~--- 73 (136)
|-...||..+| |.++|+-.-.+.. +.++. ..+++.|-|||.|.+.+.|+.|+.. |...|+.|.|.|..+.-
T Consensus 106 VRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~Ss~~e~ 184 (510)
T KOG4211|consen 106 VRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRSSRAEV 184 (510)
T ss_pred EEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeehhHHHHH
Confidence 34578999999 6666766655555 54555 7888999999999999999999984 67788888888843210
Q ss_pred -----------------------CC---------------C---------------------------------------
Q psy6353 74 -----------------------SS---------------E--------------------------------------- 76 (136)
Q Consensus 74 -----------------------~~---------------~--------------------------------------- 76 (136)
+. .
T Consensus 185 ~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~~~~~g 264 (510)
T KOG4211|consen 185 KRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPNYPVSSG 264 (510)
T ss_pred HhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCccccccccccccccccccccCCCCC
Confidence 00 0
Q ss_pred -------------CCCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 77 -------------SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 77 -------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
...+..+..+++|...++.++..+|+..-.+ .+.|--.++....+.++|+|++.|++.
T Consensus 265 ~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig~dGr~TGEAdveF~t~edav 335 (510)
T KOG4211|consen 265 PHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIGPDGRATGEADVEFATGEDAV 335 (510)
T ss_pred cccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEEEEeCCCCccCCcceeecccchhhH
Confidence 0112468889999999999999999876544 666666676777788999999999873
No 112
>KOG1456|consensus
Probab=98.68 E-value=4.5e-07 Score=65.04 Aligned_cols=117 Identities=22% Similarity=0.306 Sum_probs=94.1
Q ss_pred HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCC--ceEEEEeeCCCCC--------------
Q psy6353 13 YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQN--KTIKVSYARPSSE-------------- 76 (136)
Q Consensus 13 l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g--~~l~v~~~~~~~~-------------- 76 (136)
|..++...|+|..|.+.+. +--.|.|+|.+.+.|++|..+|||..|.. ..|+|.+++|..-
T Consensus 139 ly~Icnp~GkVlRIvIfkk---ngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~rlnV~knd~DtwDyTl 215 (494)
T KOG1456|consen 139 LYTICNPQGKVLRIVIFKK---NGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTRLNVQKNDKDTWDYTL 215 (494)
T ss_pred hhhhcCCCCceEEEEEEec---cceeeEEeechhHHHHHHHhhcccccccccceeEEEEecCcceeeeeecCCccccccC
Confidence 8899999999999998872 33469999999999999999999998864 5788888776321
Q ss_pred --------------------------------------------------------------------CCCCceEEEcCC
Q psy6353 77 --------------------------------------------------------------------SIKGANLYVSGL 88 (136)
Q Consensus 77 --------------------------------------------------------------------~~~~~~l~v~nl 88 (136)
...+..+.|.+|
T Consensus 216 p~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~~~~g~a~p~g~~~g~VmMVyGL 295 (494)
T KOG1456|consen 216 PDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYRDGRGYASPGGGAPGCVMMVYGL 295 (494)
T ss_pred CCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCccccccCCCCCCCCCCCCCcEEEEEec
Confidence 013457888889
Q ss_pred CCC-CCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCccccccC
Q psy6353 89 PKH-MSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLRR 136 (136)
Q Consensus 89 ~~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~~ 136 (136)
+.. ++-+.|..+|-.||.|..++.++.+ .+-|.|+|.+.++..|
T Consensus 296 dh~k~N~drlFNl~ClYGNV~rvkFmkTk----~gtamVemgd~~aver 340 (494)
T KOG1456|consen 296 DHGKMNCDRLFNLFCLYGNVERVKFMKTK----PGTAMVEMGDAYAVER 340 (494)
T ss_pred cccccchhhhhhhhhhcCceeeEEEeecc----cceeEEEcCcHHHHHH
Confidence 865 5788999999999999999999853 2457999999887653
No 113
>KOG1190|consensus
Probab=98.64 E-value=3.9e-07 Score=65.92 Aligned_cols=126 Identities=17% Similarity=0.220 Sum_probs=90.4
Q ss_pred eecCCChhhh---HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCC--ceEEEEeeC-----
Q psy6353 3 YQTLLNKLFT---YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQN--KTIKVSYAR----- 72 (136)
Q Consensus 3 ~v~nl~~~~~---l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g--~~l~v~~~~----- 72 (136)
.++|+-.-++ |+.+|++||.|..|.-.. ....=.|+|.|.+.+.|+.|..+|+|..|.+ ..|++.++.
T Consensus 154 iie~m~ypVslDVLHqvFS~fG~VlKIiTF~--Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~Ln 231 (492)
T KOG1190|consen 154 IIENMFYPVSLDVLHQVFSKFGFVLKIITFT--KNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLN 231 (492)
T ss_pred EeccceeeeEHHHHHHHHhhcceeEEEEEEe--cccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccce
Confidence 4566666666 899999999998764433 2222348999999999999999999988875 345554322
Q ss_pred -----CCCCC---------------------------------------------------CC--CceEEEcCCCCC-CC
Q psy6353 73 -----PSSES---------------------------------------------------IK--GANLYVSGLPKH-MS 93 (136)
Q Consensus 73 -----~~~~~---------------------------------------------------~~--~~~l~v~nl~~~-~t 93 (136)
.+.++ .. ...|-|.|+.+. +|
T Consensus 232 vKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~~VT 311 (492)
T KOG1190|consen 232 VKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEEAVT 311 (492)
T ss_pred eeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCchhccc
Confidence 11110 01 356778888765 69
Q ss_pred HHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCccccc
Q psy6353 94 QQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERL 134 (136)
Q Consensus 94 ~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~ 134 (136)
.+-|..+|+-||.|..++|..++. --|.+.|.+...+
T Consensus 312 ~d~LftlFgvYGdVqRVkil~nkk----d~ALIQmsd~~qA 348 (492)
T KOG1190|consen 312 PDVLFTLFGVYGDVQRVKILYNKK----DNALIQMSDGQQA 348 (492)
T ss_pred hhHHHHHHhhhcceEEEEeeecCC----cceeeeecchhHH
Confidence 999999999999999999998754 3357888776543
No 114
>KOG4209|consensus
Probab=98.63 E-value=7.8e-08 Score=65.85 Aligned_cols=70 Identities=20% Similarity=0.260 Sum_probs=63.8
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR 72 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~ 72 (136)
+|++|++...| ++..|+.+|.+..+.++. .++++|||+||+|.+.+.++.++. |||..+.|+.+.+.+..
T Consensus 104 v~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~r 178 (231)
T KOG4209|consen 104 VWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLKR 178 (231)
T ss_pred EEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeeee
Confidence 68999999888 788899999999888888 788899999999999999999999 99999999999887654
No 115
>KOG0108|consensus
Probab=98.61 E-value=4.4e-08 Score=72.40 Aligned_cols=55 Identities=20% Similarity=0.375 Sum_probs=51.7
Q ss_pred ceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccc-eEeecCcccccc
Q psy6353 81 ANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGK-YYSGLGGRERLR 135 (136)
Q Consensus 81 ~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~-~fv~f~~~e~~~ 135 (136)
..+||+|+|+++++++|.++|+..|.|.+++++-|..+|+.++ +|++|.+.|++.
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~ 74 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAE 74 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHH
Confidence 7899999999999999999999999999999999999999955 899999988764
No 116
>KOG0415|consensus
Probab=98.61 E-value=3e-08 Score=70.46 Aligned_cols=58 Identities=19% Similarity=0.378 Sum_probs=53.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCc-cceEeecCcccccc
Q psy6353 78 IKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATEN-GKYYSGLGGRERLR 135 (136)
Q Consensus 78 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~-~~~fv~f~~~e~~~ 135 (136)
.+.+.|||..|.+-++++||.-+|+.||+|.+|.+++|..+|.+ ..|||+|++.|+++
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE 295 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCE 295 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHH
Confidence 45688999999999999999999999999999999999999988 67999999999865
No 117
>KOG4660|consensus
Probab=98.61 E-value=2.1e-08 Score=74.55 Aligned_cols=105 Identities=20% Similarity=0.176 Sum_probs=77.5
Q ss_pred CeeecCCChhhh---HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCC-
Q psy6353 1 MVYQTLLNKLFT---YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE- 76 (136)
Q Consensus 1 ~v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~- 76 (136)
.|+|-|||..++ |+.+|+.||+|.++. .+....|.+||+|.|..+|++|+++|++..+.|+.+++........
T Consensus 77 ~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir---~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~~~~~~~~~ 153 (549)
T KOG4660|consen 77 TLVVFNLPRSVSNDTLLRIFGAYGEIREIR---ETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIKRPGGARRAMG 153 (549)
T ss_pred eEEEEecCCcCCHHHHHHHHHhhcchhhhh---cccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCCCcccccch
Confidence 478999999998 999999999999865 4446788999999999999999999999999999888321110000
Q ss_pred ---------------------CCCCceEEEcCCCCCCCHHHHHHhhcCCCceEE
Q psy6353 77 ---------------------SIKGANLYVSGLPKHMSQQELESLFSPYGRIIT 109 (136)
Q Consensus 77 ---------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~ 109 (136)
......++.- |++..+..-++..++-+|.+..
T Consensus 154 ~~~~~~~~~~~~~p~a~s~pgg~~~~~~~g~-l~P~~s~~~~~~~~~~~~~~~~ 206 (549)
T KOG4660|consen 154 LQSGTSFLNHFGSPLANSPPGGWPRGQLFGM-LSPTRSSILLEHISSVDGSSPG 206 (549)
T ss_pred hcccchhhhhccchhhcCCCCCCcCCcceee-eccchhhhhhhcchhccCcccc
Confidence 0011223333 7777777666777777776654
No 118
>KOG2193|consensus
Probab=98.60 E-value=1e-08 Score=74.28 Aligned_cols=104 Identities=27% Similarity=0.426 Sum_probs=85.2
Q ss_pred eeecCCChhhhHHHHhccCCCe----eEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcC-ceeCCceEEEEeeCCCCC
Q psy6353 2 VYQTLLNKLFTYEKVHLGFSDA----EICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNG-LRLQNKTIKVSYARPSSE 76 (136)
Q Consensus 2 v~v~nl~~~~~l~~~f~~~G~v----~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~-~~~~g~~l~v~~~~~~~~ 76 (136)
+|++||.+..+..++-+-||.- ..-+++ ..||+|+...+..+|.+|+++++| ..+.|+++.+.++.++..
T Consensus 4 lyignL~p~~~psdl~svfg~ak~~~~g~fl~-----k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkq 78 (584)
T KOG2193|consen 4 LYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV-----KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQ 78 (584)
T ss_pred ccccccCCCCChHHHHHHhccccCCCCcceee-----ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHH
Confidence 6899999999944444445532 122232 258999999999999999999998 778999999998887754
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEE
Q psy6353 77 SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRI 112 (136)
Q Consensus 77 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i 112 (136)
..+++-|+|+|+...++.+..+..+||.+..|..
T Consensus 79 --rsrk~Qirnippql~wevld~Ll~qyg~ve~~eq 112 (584)
T KOG2193|consen 79 --RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQ 112 (584)
T ss_pred --HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhh
Confidence 5677999999999999999999999999998864
No 119
>KOG0130|consensus
Probab=98.59 E-value=5.3e-08 Score=60.46 Aligned_cols=58 Identities=16% Similarity=0.267 Sum_probs=53.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccc-eEeecCccccc
Q psy6353 77 SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGK-YYSGLGGRERL 134 (136)
Q Consensus 77 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~-~fv~f~~~e~~ 134 (136)
+..++-|+|.++.+.+++++|.+.|..||+|.++.+-.|..+|..++ +.|++++.++|
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keA 127 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEA 127 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHH
Confidence 45778999999999999999999999999999999999999998855 79999998876
No 120
>KOG4210|consensus
Probab=98.59 E-value=5.3e-08 Score=68.67 Aligned_cols=131 Identities=13% Similarity=0.101 Sum_probs=95.1
Q ss_pred eecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCC--
Q psy6353 3 YQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSS-- 75 (136)
Q Consensus 3 ~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~-- 75 (136)
|++++...+. ...++...|......... ....++|++.+.|...+.+..|+.......+.+..+.........
T Consensus 92 f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~~~~~~ 171 (285)
T KOG4210|consen 92 FVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNTRRGLR 171 (285)
T ss_pred cccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccccccccc
Confidence 4555555554 446677788666665555 678899999999999999999998433345555444432211111
Q ss_pred --------CCCCCceEE-EcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCc-cceEeecCcccc
Q psy6353 76 --------ESIKGANLY-VSGLPKHMSQQELESLFSPYGRIITSRILCDNLATEN-GKYYSGLGGRER 133 (136)
Q Consensus 76 --------~~~~~~~l~-v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~-~~~fv~f~~~e~ 133 (136)
......+++ +.+++..++.++|+..|..+|.|..++++.++.++.. +.+|++|...+.
T Consensus 172 ~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~ 239 (285)
T KOG4210|consen 172 PKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNS 239 (285)
T ss_pred ccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchh
Confidence 112344556 9999999999999999999999999999999999888 458999987654
No 121
>KOG4207|consensus
Probab=98.56 E-value=7e-08 Score=63.99 Aligned_cols=57 Identities=21% Similarity=0.309 Sum_probs=51.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCc-cceEeecCcccccc
Q psy6353 79 KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATEN-GKYYSGLGGRERLR 135 (136)
Q Consensus 79 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~-~~~fv~f~~~e~~~ 135 (136)
.-..|.|.||-..++.++|+.+|.+||.|.+|.|++|..+... ++|||.|-...+|.
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~dae 69 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAE 69 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHH
Confidence 4567999999999999999999999999999999999988888 55999998876653
No 122
>KOG0111|consensus
Probab=98.54 E-value=4.8e-08 Score=65.38 Aligned_cols=57 Identities=23% Similarity=0.368 Sum_probs=52.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccc-eEeecCccccc
Q psy6353 78 IKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGK-YYSGLGGRERL 134 (136)
Q Consensus 78 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~-~fv~f~~~e~~ 134 (136)
...++|||++|...+++.-|...|-+||.|..+.++.|-.++++++ +||+|.-.|+|
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDA 65 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDA 65 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchh
Confidence 3568999999999999999999999999999999999999999855 99999998876
No 123
>KOG0153|consensus
Probab=98.45 E-value=2.1e-07 Score=65.90 Aligned_cols=54 Identities=28% Similarity=0.447 Sum_probs=47.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 77 SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 77 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
.....+|||++|...+++.+|+++|-+||+|.++.+... .++|||.|.++++|.
T Consensus 225 D~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~-----~~CAFv~ftTR~aAE 278 (377)
T KOG0153|consen 225 DTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR-----KGCAFVTFTTREAAE 278 (377)
T ss_pred ccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc-----cccceeeehhhHHHH
Confidence 345689999999999999999999999999999998863 368999999999875
No 124
>KOG0120|consensus
Probab=98.43 E-value=3.1e-07 Score=68.64 Aligned_cols=126 Identities=14% Similarity=0.285 Sum_probs=91.2
Q ss_pred CeeecCCChhhhHHHHhccC--------------C-CeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCce
Q psy6353 1 MVYQTLLNKLFTYEKVHLGF--------------S-DAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKT 65 (136)
Q Consensus 1 ~v~v~nl~~~~~l~~~f~~~--------------G-~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~ 65 (136)
++|++++|..++-......+ | .+..+ ...+.+.++|++|.+.++|..|+. +++..+.|++
T Consensus 177 r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~----~~n~~~nfa~ie~~s~~~at~~~~-~~~~~f~g~~ 251 (500)
T KOG0120|consen 177 RLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSV----QLNLEKNFAFIEFRSISEATEAMA-LDGIIFEGRP 251 (500)
T ss_pred hhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeee----eecccccceeEEecCCCchhhhhc-ccchhhCCCC
Confidence 46888888777622222211 1 12333 334577899999999999999988 6788888888
Q ss_pred EEEEeeCCCC-----------------------CCCCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCc-
Q psy6353 66 IKVSYARPSS-----------------------ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATEN- 121 (136)
Q Consensus 66 l~v~~~~~~~-----------------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~- 121 (136)
+++....... ......++++++||...++.++.++...||.+...+++.|..+|.+
T Consensus 252 ~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~sk 331 (500)
T KOG0120|consen 252 LKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSK 331 (500)
T ss_pred ceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeeccccccccc
Confidence 7774211100 0124568999999999999999999999999999999999987666
Q ss_pred cceEeecCcc
Q psy6353 122 GKYYSGLGGR 131 (136)
Q Consensus 122 ~~~fv~f~~~ 131 (136)
+++|.+|-+.
T Consensus 332 g~af~ey~dp 341 (500)
T KOG0120|consen 332 GFAFCEYCDP 341 (500)
T ss_pred ceeeeeeeCC
Confidence 5578877653
No 125
>KOG0112|consensus
Probab=98.42 E-value=2.3e-07 Score=72.59 Aligned_cols=125 Identities=16% Similarity=0.143 Sum_probs=105.0
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc-cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI-STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSES 77 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~-~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~~ 77 (136)
||.+||+..++ ++..|..+|.+.+|.+-. .-++...|+|+.|.+.+.+-.|...+.+..|..-.+++.+..+ ..
T Consensus 375 Lf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~~--ks 452 (975)
T KOG0112|consen 375 LFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQP--KS 452 (975)
T ss_pred hhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCccccccccc--cc
Confidence 68899999888 899999999999998877 5677778999999999999999988988888877777777765 34
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCcccc
Q psy6353 78 IKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133 (136)
Q Consensus 78 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~ 133 (136)
...+.++++++++-.....+...|..||.|..+.+-- |. ..+|+.+++.+.
T Consensus 453 t~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h----gq-~yayi~yes~~~ 503 (975)
T KOG0112|consen 453 TPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH----GQ-PYAYIQYESPPA 503 (975)
T ss_pred ccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc----CC-cceeeecccCcc
Confidence 4778899999999999999999999999998865432 22 567888887654
No 126
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.39 E-value=3.8e-06 Score=49.94 Aligned_cols=71 Identities=25% Similarity=0.400 Sum_probs=53.5
Q ss_pred eeecCCChhhh---HHHHhcc--CCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeC----CceEEEEe
Q psy6353 2 VYQTLLNKLFT---YEKVHLG--FSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQ----NKTIKVSY 70 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~--~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~----g~~l~v~~ 70 (136)
|-+.|+|..+| |.+++.. .|...-+.++- .++.+.|||||.|.+++.|..-.+.++|..+. .+...+.+
T Consensus 4 vMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i~y 83 (97)
T PF04059_consen 4 VMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEISY 83 (97)
T ss_pred EEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEEeh
Confidence 56889999988 4444322 46666677777 67889999999999999999999999998775 23444555
Q ss_pred eC
Q psy6353 71 AR 72 (136)
Q Consensus 71 ~~ 72 (136)
|.
T Consensus 84 Ar 85 (97)
T PF04059_consen 84 AR 85 (97)
T ss_pred hH
Confidence 54
No 127
>KOG0132|consensus
Probab=98.32 E-value=4.4e-07 Score=70.16 Aligned_cols=52 Identities=25% Similarity=0.536 Sum_probs=47.2
Q ss_pred CceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCccccccC
Q psy6353 80 GANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLRR 136 (136)
Q Consensus 80 ~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~~ 136 (136)
++||||+.|+.++++.||.++|..||+|.++.++. .+++|||.|.++.+|.+
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~-----~R~cAfI~M~~RqdA~k 472 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP-----PRGCAFIKMVRRQDAEK 472 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeecc-----CCceeEEEEeehhHHHH
Confidence 57999999999999999999999999999998874 55889999999988753
No 128
>KOG2314|consensus
Probab=98.31 E-value=2e-06 Score=64.60 Aligned_cols=68 Identities=31% Similarity=0.318 Sum_probs=56.4
Q ss_pred eeecCCChhhh---------HHHHhccCCCeeEEEEEc-cCCCceeeEEEEcCCHHHHHHHHHHHcCceeC-CceEEEE
Q psy6353 2 VYQTLLNKLFT---------YEKVHLGFSDAEICVFLI-STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQ-NKTIKVS 69 (136)
Q Consensus 2 v~v~nl~~~~~---------l~~~f~~~G~v~~~~~~~-~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~-g~~l~v~ 69 (136)
|+|.|.|.--. |..+|+++|++....++. ..|..+||.|++|.+..+|+.|++.+||+.+. +..+.+.
T Consensus 61 Vvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~v~ 139 (698)
T KOG2314|consen 61 VVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFFVR 139 (698)
T ss_pred EEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEEee
Confidence 56777774221 789999999999999887 67779999999999999999999999998887 4555554
No 129
>KOG0226|consensus
Probab=98.30 E-value=5.3e-07 Score=61.56 Aligned_cols=123 Identities=8% Similarity=0.139 Sum_probs=97.9
Q ss_pred HHHHhccCCCeeEEEEEc-cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEE----eeCCCC--CCCCCceEEE
Q psy6353 13 YEKVHLGFSDAEICVFLI-STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVS----YARPSS--ESIKGANLYV 85 (136)
Q Consensus 13 l~~~f~~~G~v~~~~~~~-~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~----~~~~~~--~~~~~~~l~v 85 (136)
+...|+.+-.+...++++ ..+.-.+++|+.|.....-..+...-+++.++.++++.. |-+|.- -..+..+||.
T Consensus 116 ~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gtswedPsl~ew~~~DfRIfc 195 (290)
T KOG0226|consen 116 LPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTSWEDPSLAEWDEDDFRIFC 195 (290)
T ss_pred chhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeeccccccCCcccccCccccceeec
Confidence 355677777777777777 667778999999998888777777667888888877764 222222 1245689999
Q ss_pred cCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccc-eEeecCcccccc
Q psy6353 86 SGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGK-YYSGLGGRERLR 135 (136)
Q Consensus 86 ~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~-~fv~f~~~e~~~ 135 (136)
+.|..+++++-|-..|.+|......++++|+.+|++++ +||.|.+.++++
T Consensus 196 gdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~ 246 (290)
T KOG0226|consen 196 GDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYV 246 (290)
T ss_pred ccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHH
Confidence 99999999999999999999999999999999999955 899999988764
No 130
>KOG4208|consensus
Probab=98.28 E-value=1.8e-06 Score=57.22 Aligned_cols=61 Identities=15% Similarity=0.278 Sum_probs=52.2
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHhhcCC-CceEEEEEEeCCCCCCccc-eEeecCcccccc
Q psy6353 75 SESIKGANLYVSGLPKHMSQQELESLFSPY-GRIITSRILCDNLATENGK-YYSGLGGRERLR 135 (136)
Q Consensus 75 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~-G~v~~~~i~~~~~~~~~~~-~fv~f~~~e~~~ 135 (136)
+......-+++..+|....+..+...|.++ |.+...++.|+..||.+++ |||+|++.|.|+
T Consensus 44 p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~ 106 (214)
T KOG4208|consen 44 PEQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAK 106 (214)
T ss_pred CccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHH
Confidence 344566789999999999999999999999 7778889999999998855 899999998763
No 131
>smart00361 RRM_1 RNA recognition motif.
Probab=98.28 E-value=8.2e-07 Score=49.78 Aligned_cols=42 Identities=24% Similarity=0.409 Sum_probs=33.8
Q ss_pred HHHHHHhhc----CCCceEEEE-EEeCCCC--CCc-cceEeecCcccccc
Q psy6353 94 QQELESLFS----PYGRIITSR-ILCDNLA--TEN-GKYYSGLGGRERLR 135 (136)
Q Consensus 94 ~~~l~~~f~----~~G~v~~~~-i~~~~~~--~~~-~~~fv~f~~~e~~~ 135 (136)
+++|++.|+ +||.|.++. ++.++.+ +.. +.+||+|.+.|+|.
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~ 51 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAA 51 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHH
Confidence 578888888 999999995 7777655 544 55999999999875
No 132
>KOG0116|consensus
Probab=98.24 E-value=1.7e-06 Score=63.89 Aligned_cols=56 Identities=21% Similarity=0.384 Sum_probs=46.8
Q ss_pred CceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCc-cceEeecCcccccc
Q psy6353 80 GANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATEN-GKYYSGLGGRERLR 135 (136)
Q Consensus 80 ~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~-~~~fv~f~~~e~~~ 135 (136)
..+|||.|||+++++.+|++.|.+||.|....|......+.. .++||+|.+.+++.
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~ 344 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQ 344 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhh
Confidence 456999999999999999999999999999887776533333 66999999988764
No 133
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.23 E-value=1e-06 Score=47.05 Aligned_cols=35 Identities=23% Similarity=0.399 Sum_probs=29.5
Q ss_pred HHHhhcCCCceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 97 LESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 97 l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
|.++|++||+|..+.+..+. .+.+||+|.+.|+|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~----~~~a~V~f~~~~~A~ 35 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK----RGFAFVEFASVEDAQ 35 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS----TTEEEEEESSHHHHH
T ss_pred ChHHhCCcccEEEEEEEeCC----CCEEEEEECCHHHHH
Confidence 67899999999999998765 467999999999885
No 134
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.17 E-value=5.9e-06 Score=58.76 Aligned_cols=71 Identities=17% Similarity=0.284 Sum_probs=56.1
Q ss_pred eeecCCChhhh---------HHHHhccCCCeeEEEEEc-c-CCC-ceee--EEEEcCCHHHHHHHHHHHcCceeCCceEE
Q psy6353 2 VYQTLLNKLFT---------YEKVHLGFSDAEICVFLI-S-TAQ-SLGY--GFVNYHRPEDAEKAINTLNGLRLQNKTIK 67 (136)
Q Consensus 2 v~v~nl~~~~~---------l~~~f~~~G~v~~~~~~~-~-~~~-~kg~--~fv~f~~~~~a~~a~~~~~~~~~~g~~l~ 67 (136)
|||..||..+. -.++|.|||+|..|.+-+ . +.. ..+. .+|+|.+.++|.+|+.+.+|..++||.|+
T Consensus 117 vYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~lk 196 (480)
T COG5175 117 VYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRVLK 196 (480)
T ss_pred eEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCceEe
Confidence 67877776554 368999999999998877 2 111 1222 49999999999999999999999999999
Q ss_pred EEeeC
Q psy6353 68 VSYAR 72 (136)
Q Consensus 68 v~~~~ 72 (136)
+.+..
T Consensus 197 atYGT 201 (480)
T COG5175 197 ATYGT 201 (480)
T ss_pred eecCc
Confidence 97643
No 135
>KOG1365|consensus
Probab=98.17 E-value=3.6e-05 Score=55.69 Aligned_cols=121 Identities=15% Similarity=0.187 Sum_probs=85.7
Q ss_pred HHHHhccCCCeeEE-EEEc-cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCC--------------
Q psy6353 13 YEKVHLGFSDAEIC-VFLI-STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE-------------- 76 (136)
Q Consensus 13 l~~~f~~~G~v~~~-~~~~-~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~-------------- 76 (136)
+..+|.-..-..-. .++. ..|+-.|.+.|.|.|++.-+.|++ -|.+-++++.+.+-.+....-
T Consensus 77 ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~Rdlalk-Rhkhh~g~ryievYka~ge~f~~iagg~s~e~~~f 155 (508)
T KOG1365|consen 77 IARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALK-RHKHHMGTRYIEVYKATGEEFLKIAGGTSNEAAPF 155 (508)
T ss_pred HHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhH-hhhhhccCCceeeeccCchhheEecCCccccCCCC
Confidence 55566544332222 2333 667888999999999999999998 467888899988865443210
Q ss_pred --CCCCceEEEcCCCCCCCHHHHHHhhcCC----CceEEEEEEeCCCCCCccceEeecCccccc
Q psy6353 77 --SIKGANLYVSGLPKHMSQQELESLFSPY----GRIITSRILCDNLATENGKYYSGLGGRERL 134 (136)
Q Consensus 77 --~~~~~~l~v~nl~~~~t~~~l~~~f~~~----G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~ 134 (136)
....--+.+++||.++++.|+.++|.+- |..+.+-.+..+++...|.|||.|+.+|.+
T Consensus 156 lsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~a 219 (508)
T KOG1365|consen 156 LSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDA 219 (508)
T ss_pred CCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHH
Confidence 1123458889999999999999999733 234556666666666667799999999876
No 136
>KOG1548|consensus
Probab=98.08 E-value=1.8e-05 Score=56.40 Aligned_cols=60 Identities=17% Similarity=0.247 Sum_probs=53.1
Q ss_pred HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCC
Q psy6353 13 YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPS 74 (136)
Q Consensus 13 l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~ 74 (136)
|.+-+++||+|.+|.+. ..++.|-+.|.|.+.+.|+.|++.|+|..+.||.|....+..+
T Consensus 293 l~eec~K~G~v~~vvv~--d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~ 352 (382)
T KOG1548|consen 293 LTEECEKFGQVRKVVVY--DRHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGK 352 (382)
T ss_pred HHHHHHHhCCcceEEEe--ccCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCc
Confidence 56778999999999885 4567899999999999999999999999999999999877644
No 137
>KOG4661|consensus
Probab=98.07 E-value=5.5e-06 Score=62.62 Aligned_cols=56 Identities=23% Similarity=0.472 Sum_probs=49.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccc-eEeecCccccc
Q psy6353 79 KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGK-YYSGLGGRERL 134 (136)
Q Consensus 79 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~-~fv~f~~~e~~ 134 (136)
-+++|||++|...+..-||+.+|++||+|+-.+++++..+...++ +||.|.+.++|
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eA 460 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEA 460 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHH
Confidence 457899999999999999999999999999999999976666655 79999998876
No 138
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.01 E-value=1.1e-05 Score=47.90 Aligned_cols=55 Identities=13% Similarity=0.170 Sum_probs=47.5
Q ss_pred ceEEEcCCCCCCCHHHHHHhhcCC--CceEEEEEEeCCCCCCc-cceEeecCcccccc
Q psy6353 81 ANLYVSGLPKHMSQQELESLFSPY--GRIITSRILCDNLATEN-GKYYSGLGGRERLR 135 (136)
Q Consensus 81 ~~l~v~nl~~~~t~~~l~~~f~~~--G~v~~~~i~~~~~~~~~-~~~fv~f~~~e~~~ 135 (136)
+||.|+|||...|.++|.+++... |...-+.++-|..++.+ |.|||-|.+.+.+.
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~ 59 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAI 59 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHH
Confidence 689999999999999999988754 67778999999888887 66999999988763
No 139
>KOG4206|consensus
Probab=97.97 E-value=3.9e-05 Score=51.67 Aligned_cols=68 Identities=16% Similarity=0.330 Sum_probs=57.9
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeC-CceEEEEeeC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQ-NKTIKVSYAR 72 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~-g~~l~v~~~~ 72 (136)
+|+.|||.+.+ +..+|++|....+++++. .-++.|||+|.+...|..|.+.+++..+- ...+++.+++
T Consensus 149 lf~~niP~es~~e~l~~lf~qf~g~keir~i~---~~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 149 LFLTNIPSESESEMLSDLFEQFPGFKEIRLIP---PRSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred EEEecCCcchhHHHHHHHHhhCcccceeEecc---CCCceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 68899999998 899999999999998876 34578999999999999999999998776 6677776553
No 140
>KOG3152|consensus
Probab=97.90 E-value=5.5e-06 Score=56.70 Aligned_cols=64 Identities=13% Similarity=0.215 Sum_probs=54.8
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cC--------CCcee----eEEEEcCCHHHHHHHHHHHcCceeCCc
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--ST--------AQSLG----YGFVNYHRPEDAEKAINTLNGLRLQNK 64 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~--------~~~kg----~~fv~f~~~~~a~~a~~~~~~~~~~g~ 64 (136)
||++++|..+. |++++++||.|-.|.+.. .+ |.+++ -|+|+|.+...|..+...||+..|+|+
T Consensus 77 vylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Iggk 156 (278)
T KOG3152|consen 77 VYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIGGK 156 (278)
T ss_pred EEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccCCC
Confidence 79999999998 999999999999999877 22 22222 478999999999999999999999987
Q ss_pred e
Q psy6353 65 T 65 (136)
Q Consensus 65 ~ 65 (136)
.
T Consensus 157 k 157 (278)
T KOG3152|consen 157 K 157 (278)
T ss_pred C
Confidence 5
No 141
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.85 E-value=1.9e-05 Score=47.81 Aligned_cols=50 Identities=20% Similarity=0.300 Sum_probs=31.3
Q ss_pred ceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 81 ANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 81 ~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
..|.+.+++..++.++|++.|++||.|..|.+.+.. ..+||+|.+.|.|.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~-----~~g~VRf~~~~~A~ 51 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD-----TEGYVRFKTPEAAQ 51 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT------SEEEEEESS---HH
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC-----CEEEEEECCcchHH
Confidence 468899999999999999999999999998777532 56899999998764
No 142
>KOG4454|consensus
Probab=97.74 E-value=1.6e-05 Score=53.43 Aligned_cols=54 Identities=17% Similarity=0.148 Sum_probs=48.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCcccc
Q psy6353 79 KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133 (136)
Q Consensus 79 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~ 133 (136)
..++|||.|+...++++-|.++|-+-|+|..+.|+.+..... ++|||.|+++-.
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~-kFa~v~f~~E~s 61 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQ-KFAYVFFPNENS 61 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCC-ceeeeecccccc
Confidence 468999999999999999999999999999999998876665 599999998754
No 143
>KOG0533|consensus
Probab=97.72 E-value=4.1e-05 Score=52.74 Aligned_cols=57 Identities=19% Similarity=0.358 Sum_probs=50.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 79 KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 79 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
...+++|.|||..++++||+++|..||.+..+-+-.++.+.+.+.+=|.|+..+++.
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~ 138 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAE 138 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHH
Confidence 447899999999999999999999999898899998888878788999999887654
No 144
>KOG0115|consensus
Probab=97.72 E-value=8.1e-05 Score=51.13 Aligned_cols=80 Identities=24% Similarity=0.286 Sum_probs=68.7
Q ss_pred HHHHHHHHHHcCceeCCceEEEEeeCCCCCCCCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEe
Q psy6353 47 EDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYS 126 (136)
Q Consensus 47 ~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv 126 (136)
.-|..|..+|++...-++.+++.++.. ..|+|.|+++.++-+.+.+.|+.||+|....+..|......+.+.|
T Consensus 5 t~ae~ak~eLd~~~~~~~~lr~rfa~~-------a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v 77 (275)
T KOG0115|consen 5 TLAEIAKRELDGRFPKGRSLRVRFAMH-------AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIV 77 (275)
T ss_pred cHHHHHHHhcCCCCCCCCceEEEeecc-------ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchh
Confidence 456777778999999999999999863 5699999999999999999999999999888888877777788899
Q ss_pred ecCcccc
Q psy6353 127 GLGGRER 133 (136)
Q Consensus 127 ~f~~~e~ 133 (136)
+|..+=.
T Consensus 78 ~~~~k~~ 84 (275)
T KOG0115|consen 78 EFAKKPN 84 (275)
T ss_pred hhhcchh
Confidence 9887543
No 145
>KOG0106|consensus
Probab=97.60 E-value=4.3e-05 Score=51.66 Aligned_cols=62 Identities=19% Similarity=0.318 Sum_probs=52.1
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEE
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVS 69 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~ 69 (136)
+.+.+++..+. |++.|+++|.+..... ..+++||.|...++|..|+..+++..+.++.|.+.
T Consensus 102 ~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~ 166 (216)
T KOG0106|consen 102 LIVRNLSLRVSWQDLKDHFRPAGEVTYVDA------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVE 166 (216)
T ss_pred eeeccchhhhhHHHHhhhhcccCCCchhhh------hccccceeehhhhhhhhcchhccchhhcCceeeec
Confidence 35667777774 9999999999854433 35789999999999999999999999999999994
No 146
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.59 E-value=0.0002 Score=43.32 Aligned_cols=52 Identities=21% Similarity=0.336 Sum_probs=31.0
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHc
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLN 57 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~ 57 (136)
|.+.+++..++ |++.|++||+|..|.+.+ |. .-|+|.|.+++.|+.|+.++.
T Consensus 4 l~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~--G~--~~g~VRf~~~~~A~~a~~~~~ 58 (105)
T PF08777_consen 4 LKFSGLGEPTSREDIKEAFSQFGEVAYVDFSR--GD--TEGYVRFKTPEAAQKALEKLK 58 (105)
T ss_dssp EEEEE--SS--HHHHHHHT-SS--EEEEE--T--T---SEEEEEESS---HHHHHHHHH
T ss_pred EEEecCCCCcCHHHHHHHHHhcCCcceEEecC--CC--CEEEEEECCcchHHHHHHHHH
Confidence 45666777776 999999999888877754 33 248999999999999998663
No 147
>KOG4209|consensus
Probab=97.53 E-value=0.0001 Score=50.64 Aligned_cols=58 Identities=16% Similarity=0.253 Sum_probs=51.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCc-cceEeecCccccc
Q psy6353 77 SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATEN-GKYYSGLGGRERL 134 (136)
Q Consensus 77 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~-~~~fv~f~~~e~~ 134 (136)
..+...+|++|+....|.+.+...|+.||.+..+.++.|...+.. +.+|++|.+.+..
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~ 156 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELV 156 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhh
Confidence 456788999999999999999999999999999999999988765 6699999998764
No 148
>KOG1995|consensus
Probab=97.52 E-value=8.4e-05 Score=53.21 Aligned_cols=74 Identities=22% Similarity=0.198 Sum_probs=60.2
Q ss_pred eeecCCChhhh---HHHHhccCCCeeE--------EEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEE
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEI--------CVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKV 68 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~--------~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v 68 (136)
+||.++|+.++ +.++|.+.|.|.. +++-+ .|+.+||-|.|+|.+...|++|+.-+++..+.+..|+|
T Consensus 69 i~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn~ikv 148 (351)
T KOG1995|consen 69 IFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGNTIKV 148 (351)
T ss_pred ceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCCCchh
Confidence 68999999998 6777777776532 33333 68999999999999999999999999999999998888
Q ss_pred EeeCCCC
Q psy6353 69 SYARPSS 75 (136)
Q Consensus 69 ~~~~~~~ 75 (136)
..+..+.
T Consensus 149 s~a~~r~ 155 (351)
T KOG1995|consen 149 SLAERRT 155 (351)
T ss_pred hhhhhcc
Confidence 7665443
No 149
>KOG0151|consensus
Probab=97.49 E-value=0.00011 Score=56.87 Aligned_cols=57 Identities=19% Similarity=0.320 Sum_probs=47.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCC----CccceEeecCcccccc
Q psy6353 79 KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLAT----ENGKYYSGLGGRERLR 135 (136)
Q Consensus 79 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~----~~~~~fv~f~~~e~~~ 135 (136)
..+++|++||++++++++|-..|+.||+|.+++|++....- .+-++||-|.++-++.
T Consensus 173 ~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~e 233 (877)
T KOG0151|consen 173 QTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAE 233 (877)
T ss_pred cccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHH
Confidence 45789999999999999999999999999999999876322 2245899998876543
No 150
>KOG4210|consensus
Probab=97.43 E-value=8.6e-05 Score=52.61 Aligned_cols=72 Identities=11% Similarity=0.238 Sum_probs=63.4
Q ss_pred ecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCC
Q psy6353 4 QTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76 (136)
Q Consensus 4 v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~ 76 (136)
+.+++..++ |++.|..+|.+..++++. .++.++|+|++.|.+...+..++.. +...+.++++.+....+...
T Consensus 190 ~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 266 (285)
T KOG4210|consen 190 VGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDEPRPK 266 (285)
T ss_pred ecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCCCCcc
Confidence 889999998 556888999999998888 7899999999999999999999886 78899999999988877654
No 151
>KOG4307|consensus
Probab=97.43 E-value=0.00039 Score=54.01 Aligned_cols=121 Identities=12% Similarity=-0.039 Sum_probs=83.1
Q ss_pred HHHHhcc-CCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCC--------------C-
Q psy6353 13 YEKVHLG-FSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSS--------------E- 76 (136)
Q Consensus 13 l~~~f~~-~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~--------------~- 76 (136)
++++|-- +-.-..+...+..+...|-++|.|....+++.|++ -|...+-.|.+.+...-... .
T Consensus 328 ~rkfF~g~~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~-rn~~~~~~R~~q~~P~g~~~~~~a~~~~~~~~~~~~ 406 (944)
T KOG4307|consen 328 GRKFFPGRNAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFT-RNPSDDVNRPFQTGPPGNLGRNGAPPFQAGVPPPVI 406 (944)
T ss_pred hhhhcCcccccccchhhhhcCCCcCCceEEEecCcchHHHHHh-cCchhhhhcceeecCCCccccccCccccccCCCCcc
Confidence 5666532 22333333333233336789999999999999988 35555667777764321100 0
Q ss_pred ------------------------CCCCceEEEcCCCCCCCHHHHHHhhcCCCceEE-EEEEeCCCCCCccceEeecCcc
Q psy6353 77 ------------------------SIKGANLYVSGLPKHMSQQELESLFSPYGRIIT-SRILCDNLATENGKYYSGLGGR 131 (136)
Q Consensus 77 ------------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~-~~i~~~~~~~~~~~~fv~f~~~ 131 (136)
...+..|||..||..+++.++-++|..--.|++ +.|.+.++.-..+.|||.|..+
T Consensus 407 ~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~ 486 (944)
T KOG4307|consen 407 QNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHP 486 (944)
T ss_pred cccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCCcccccchhhheeccc
Confidence 123468999999999999999999998777776 7777777666667799999997
Q ss_pred ccc
Q psy6353 132 ERL 134 (136)
Q Consensus 132 e~~ 134 (136)
++.
T Consensus 487 ~a~ 489 (944)
T KOG4307|consen 487 TAP 489 (944)
T ss_pred ccc
Confidence 654
No 152
>KOG0128|consensus
Probab=97.42 E-value=5.6e-06 Score=64.78 Aligned_cols=121 Identities=22% Similarity=0.194 Sum_probs=92.6
Q ss_pred HHHHhccCCCeeEEEEEc-c-CCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCCC----------CCC
Q psy6353 13 YEKVHLGFSDAEICVFLI-S-TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSES----------IKG 80 (136)
Q Consensus 13 l~~~f~~~G~v~~~~~~~-~-~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~~----------~~~ 80 (136)
.+..|..+|.+..+..+. . ..+..-++++.+....+++.|.. ..+..+.++...+..+.+.... ...
T Consensus 589 ~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~-pa~~~~a~~~~av~~ad~~~~~~~~kvs~n~~R~~ 667 (881)
T KOG0128|consen 589 QRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATV-PAGGALANRSAAVGLADAEEKEENFKVSPNEIRDL 667 (881)
T ss_pred hHHHhhcccccccccCccccccccccchhhhhhccccchhhccc-ccccccCCccccCCCCCchhhhhccCcCchHHHHH
Confidence 356788899999998887 2 22222278888988888888877 5677888888888776665422 123
Q ss_pred ceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCc-cceEeecCccccc
Q psy6353 81 ANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATEN-GKYYSGLGGRERL 134 (136)
Q Consensus 81 ~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~-~~~fv~f~~~e~~ 134 (136)
.++|++|++..+.+.+|...|..+|.+..+++.--.+++.. |.+|++|.+.+.+
T Consensus 668 ~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~ 722 (881)
T KOG0128|consen 668 IKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHA 722 (881)
T ss_pred HHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCch
Confidence 57899999999999999999999999888777744445555 4599999998865
No 153
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.42 E-value=0.00021 Score=37.78 Aligned_cols=50 Identities=18% Similarity=0.386 Sum_probs=38.3
Q ss_pred ceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCccccccC
Q psy6353 81 ANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLRR 136 (136)
Q Consensus 81 ~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~~ 136 (136)
+.|-|.+.|++..+. +...|.+||+|..+.+. ......|+.|.++.++++
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~-----~~~~~~~l~y~~~~~ae~ 51 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVP-----ESTNWMYLKYKSRKDAEK 51 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcC-----CCCcEEEEEECCHHHHHh
Confidence 467888899886544 55588899999998887 233558999999988764
No 154
>KOG4676|consensus
Probab=97.30 E-value=0.00028 Score=51.31 Aligned_cols=114 Identities=9% Similarity=-0.004 Sum_probs=82.7
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc-c----CCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeC-
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI-S----TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR- 72 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~-~----~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~- 72 (136)
+-|.||....| +..+|...|+|.++.+.. . -.-....|||-|.|...+..|.. |..+.+-++-|.|...-
T Consensus 10 Iqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~~~ 88 (479)
T KOG4676|consen 10 IQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPYGD 88 (479)
T ss_pred eeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEecCC
Confidence 45789999998 899999999999998776 1 12345679999999999988877 55555556555553211
Q ss_pred CCCC----------------------------------C---------------------CCCceEEEcCCCCCCCHHHH
Q psy6353 73 PSSE----------------------------------S---------------------IKGANLYVSGLPKHMSQQEL 97 (136)
Q Consensus 73 ~~~~----------------------------------~---------------------~~~~~l~v~nl~~~~t~~~l 97 (136)
+... + ...+++++.+|+..+...++
T Consensus 89 ~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~e~ 168 (479)
T KOG4676|consen 89 EVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILPES 168 (479)
T ss_pred CCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcchhh
Confidence 1000 0 01257899999999999999
Q ss_pred HHhhcCCCceEEEEEEeCC
Q psy6353 98 ESLFSPYGRIITSRILCDN 116 (136)
Q Consensus 98 ~~~f~~~G~v~~~~i~~~~ 116 (136)
-+.|..+|+|....+....
T Consensus 169 ~e~f~r~Gev~ya~~ask~ 187 (479)
T KOG4676|consen 169 GESFERKGEVSYAHTASKS 187 (479)
T ss_pred hhhhhhcchhhhhhhhccC
Confidence 9999999998776655443
No 155
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.23 E-value=0.0019 Score=38.71 Aligned_cols=70 Identities=13% Similarity=0.099 Sum_probs=46.4
Q ss_pred eeecCCChhhh--HHHHhccCCCeeEEEEEc---------cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEE-EE
Q psy6353 2 VYQTLLNKLFT--YEKVHLGFSDAEICVFLI---------STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIK-VS 69 (136)
Q Consensus 2 v~v~nl~~~~~--l~~~f~~~G~v~~~~~~~---------~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~-v~ 69 (136)
|.|=+.|...+ +-+.|++||.|.+..-.. ........--|+|.++.+|++|+. .||..+.|..+- |.
T Consensus 9 VtVFGfp~~~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~mvGV~ 87 (100)
T PF05172_consen 9 VTVFGFPPSASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLMVGVK 87 (100)
T ss_dssp EEEE---GGGHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEEEEEE
T ss_pred EEEEccCHHHHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEEEEEE
Confidence 45556677666 889999999997775110 001234578899999999999999 589999886544 55
Q ss_pred eeC
Q psy6353 70 YAR 72 (136)
Q Consensus 70 ~~~ 72 (136)
+.+
T Consensus 88 ~~~ 90 (100)
T PF05172_consen 88 PCD 90 (100)
T ss_dssp E-H
T ss_pred EcH
Confidence 553
No 156
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.22 E-value=0.00083 Score=35.45 Aligned_cols=48 Identities=17% Similarity=0.199 Sum_probs=36.9
Q ss_pred eeecCCChhhh--HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHH
Q psy6353 2 VYQTLLNKLFT--YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAI 53 (136)
Q Consensus 2 v~v~nl~~~~~--l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~ 53 (136)
|-|.+.|.... +...|.+||+|..+.+. ...-..++.|.++.+|+.|+
T Consensus 4 I~V~Gf~~~~~~~vl~~F~~fGeI~~~~~~----~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 4 ISVSGFPPDLAEEVLEHFASFGEIVDIYVP----ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred EEEEeECchHHHHHHHHHHhcCCEEEEEcC----CCCcEEEEEECCHHHHHhhC
Confidence 44555555554 77899999999998775 23457999999999999884
No 157
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.15 E-value=0.0027 Score=40.43 Aligned_cols=54 Identities=17% Similarity=0.377 Sum_probs=42.2
Q ss_pred HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCC
Q psy6353 13 YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARP 73 (136)
Q Consensus 13 l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~ 73 (136)
|.+.|..||.+.=++... +.-+|+|.+.++|-+|+. ++|..+.|+.++++.-.|
T Consensus 53 ll~~~~~~GevvLvRfv~------~~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtp 106 (146)
T PF08952_consen 53 LLQKFAQYGEVVLVRFVG------DTMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTP 106 (146)
T ss_dssp HHHHHHCCS-ECEEEEET------TCEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE---
T ss_pred HHHHHHhCCceEEEEEeC------CeEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCc
Confidence 778889999876555443 357899999999999999 899999999999975443
No 158
>KOG4660|consensus
Probab=97.12 E-value=0.00026 Score=53.40 Aligned_cols=59 Identities=24% Similarity=0.381 Sum_probs=45.0
Q ss_pred CCCCCCCCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCccccc
Q psy6353 72 RPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERL 134 (136)
Q Consensus 72 ~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~ 134 (136)
.|.......++|+|-|||..+++++|..+|+.||+|..++..+.. .+-.||+|=|-..|
T Consensus 67 np~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~----~~~~~v~FyDvR~A 125 (549)
T KOG4660|consen 67 NPSEKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNK----RGIVFVEFYDVRDA 125 (549)
T ss_pred CCCcccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccccc----CceEEEEEeehHhH
Confidence 344445677899999999999999999999999999997655432 23358887665444
No 159
>KOG1457|consensus
Probab=97.09 E-value=0.00073 Score=45.81 Aligned_cols=58 Identities=19% Similarity=0.260 Sum_probs=47.1
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCcee
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRL 61 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~ 61 (136)
|||.||..+++ |+.+|+.|.....+++.. ......||++|.+.+.|-.|+..|+|..+
T Consensus 213 lfianl~~~~~ed~l~~~~~~~~gf~~l~~~~--~~g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 213 LFIANLGPNCTEDELKQLLSRYPGFHILKIRA--RGGMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred HhhhccCCCCCHHHHHHHHHhCCCceEEEEec--CCCcceEeecHHHHHHHHHHHHHhhccee
Confidence 68999999998 999999999887666643 22346799999999999999988888655
No 160
>KOG1996|consensus
Probab=97.09 E-value=0.0021 Score=45.30 Aligned_cols=59 Identities=17% Similarity=0.220 Sum_probs=47.9
Q ss_pred HHHHhccCCCeeEEEEEcc---CCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEee
Q psy6353 13 YEKVHLGFSDAEICVFLIS---TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYA 71 (136)
Q Consensus 13 l~~~f~~~G~v~~~~~~~~---~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~ 71 (136)
.++-+++||.|..|.|... .-.-.---||+|...++|.+|+-.|||..++||.++.++.
T Consensus 303 ~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fy 364 (378)
T KOG1996|consen 303 TKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFY 364 (378)
T ss_pred HHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheec
Confidence 6788999999999876661 1222334799999999999999999999999999887654
No 161
>KOG2202|consensus
Probab=97.08 E-value=0.00025 Score=48.79 Aligned_cols=55 Identities=20% Similarity=0.252 Sum_probs=48.5
Q ss_pred ccCCCeeEEEEEc-cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeC
Q psy6353 18 LGFSDAEICVFLI-STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR 72 (136)
Q Consensus 18 ~~~G~v~~~~~~~-~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~ 72 (136)
.+||.|.++++.. ..-+-.|=++|.|...++|++|+..||+..+.|++|.+..+.
T Consensus 91 ~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 91 DKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 4899999998887 555567889999999999999999999999999999997654
No 162
>KOG1855|consensus
Probab=96.96 E-value=0.00087 Score=49.32 Aligned_cols=58 Identities=17% Similarity=0.089 Sum_probs=47.5
Q ss_pred CeeecCCChhhh---HHHHhccCCCeeEEEEEcc-------CCCc--------eeeEEEEcCCHHHHHHHHHHHcC
Q psy6353 1 MVYQTLLNKLFT---YEKVHLGFSDAEICVFLIS-------TAQS--------LGYGFVNYHRPEDAEKAINTLNG 58 (136)
Q Consensus 1 ~v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~~-------~~~~--------kg~~fv~f~~~~~a~~a~~~~~~ 58 (136)
||.+.|||..-. |.++|+.+|.|..|+++.. .+.+ +-+|+|+|...+.|.+|.+.+|.
T Consensus 233 tivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 233 TIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred eEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 577889998776 9999999999999999871 1222 45899999999999999987754
No 163
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=96.94 E-value=0.01 Score=34.67 Aligned_cols=63 Identities=14% Similarity=0.358 Sum_probs=44.9
Q ss_pred EEEEcCCHHHHHHHHHH-HcCceeCCceEEEEeeC--CCC-------CCCCCceEEEcCCCCCCCHHHHHHhh
Q psy6353 39 GFVNYHRPEDAEKAINT-LNGLRLQNKTIKVSYAR--PSS-------ESIKGANLYVSGLPKHMSQQELESLF 101 (136)
Q Consensus 39 ~fv~f~~~~~a~~a~~~-~~~~~~~g~~l~v~~~~--~~~-------~~~~~~~l~v~nl~~~~t~~~l~~~f 101 (136)
|.|+|.+..-|+..++. -+...+++..+.+.-+. ... .....+++-++|||...++++|++..
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeE
Confidence 67999999999998873 23355666666553221 111 12467899999999999999999855
No 164
>KOG3152|consensus
Probab=96.84 E-value=0.00032 Score=48.26 Aligned_cols=40 Identities=23% Similarity=0.396 Sum_probs=36.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCC
Q psy6353 79 KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLA 118 (136)
Q Consensus 79 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~ 118 (136)
....||+++||+.+....|+++++.||+|-.+.+.+...+
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s 112 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDS 112 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhH
Confidence 5578999999999999999999999999999998877654
No 165
>KOG1855|consensus
Probab=96.78 E-value=0.0038 Score=46.10 Aligned_cols=58 Identities=19% Similarity=0.197 Sum_probs=46.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeC---CCCCCc-----------cceEeecCcccccc
Q psy6353 78 IKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD---NLATEN-----------GKYYSGLGGRERLR 135 (136)
Q Consensus 78 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~---~~~~~~-----------~~~fv~f~~~e~~~ 135 (136)
..+++|.+.|||.+-.-+.|.++|+.+|.|..|+|+.. +...+. -+|+|+|+..|.|+
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~ 300 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAAR 300 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHH
Confidence 47899999999999988999999999999999999977 332221 23677777777665
No 166
>KOG4307|consensus
Probab=96.73 E-value=0.005 Score=48.17 Aligned_cols=68 Identities=16% Similarity=0.184 Sum_probs=54.4
Q ss_pred eeecCCChhhhHHHHhccC---CCe-eEEEEEc-cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEE
Q psy6353 2 VYQTLLNKLFTYEKVHLGF---SDA-EICVFLI-STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVS 69 (136)
Q Consensus 2 v~v~nl~~~~~l~~~f~~~---G~v-~~~~~~~-~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~ 69 (136)
|-+.|+|..++|+++.+.| -.. .+|.+-+ ..|...|-|.|.|++.++|.+|...+++..|.++.+.+.
T Consensus 870 ~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~ 942 (944)
T KOG4307|consen 870 LSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLR 942 (944)
T ss_pred EEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEE
Confidence 3467999999966665554 433 3455555 889999999999999999999999999999999998875
No 167
>KOG4849|consensus
Probab=96.65 E-value=0.0013 Score=47.32 Aligned_cols=67 Identities=16% Similarity=0.152 Sum_probs=50.5
Q ss_pred eeecCCChhhh---HHHHhccCC--CeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEE
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFS--DAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKV 68 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G--~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v 68 (136)
+||+||-+..| |.+.....| .+.+++... .+|+|||||++...+...+++-++-|...+|+|+.=.|
T Consensus 83 ~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 83 CYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred EEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 68999866666 444444444 455565555 78999999999999988888899988889999875443
No 168
>KOG4676|consensus
Probab=96.29 E-value=0.0046 Score=45.21 Aligned_cols=55 Identities=13% Similarity=0.227 Sum_probs=45.3
Q ss_pred CceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCC----CccceEeecCccccc
Q psy6353 80 GANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLAT----ENGKYYSGLGGRERL 134 (136)
Q Consensus 80 ~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~----~~~~~fv~f~~~e~~ 134 (136)
...|.|.||.+++|.++++.+|...|+|..+.|..+...- ..+.+||.|.+...+
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv 65 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSV 65 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcce
Confidence 3479999999999999999999999999999988754333 335699999987643
No 169
>KOG2068|consensus
Probab=96.22 E-value=0.0015 Score=46.67 Aligned_cols=73 Identities=16% Similarity=0.225 Sum_probs=53.5
Q ss_pred eeecCCChhhh------HHHHhccCCCeeEEEEEc-cC---C-CceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEe
Q psy6353 2 VYQTLLNKLFT------YEKVHLGFSDAEICVFLI-ST---A-QSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY 70 (136)
Q Consensus 2 v~v~nl~~~~~------l~~~f~~~G~v~~~~~~~-~~---~-~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~ 70 (136)
+|+..|+.... -.+.|.+||.+..+..-+ .+ + ....-++|+|...++|..|+...+|..++|+.+++..
T Consensus 80 vyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka~~ 159 (327)
T KOG2068|consen 80 VYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKASL 159 (327)
T ss_pred hhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHHhh
Confidence 45666664333 356799999999887766 31 1 1223489999999999999999999999999888766
Q ss_pred eCCC
Q psy6353 71 ARPS 74 (136)
Q Consensus 71 ~~~~ 74 (136)
..++
T Consensus 160 gttk 163 (327)
T KOG2068|consen 160 GTTK 163 (327)
T ss_pred CCCc
Confidence 5443
No 170
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.15 E-value=0.031 Score=35.55 Aligned_cols=55 Identities=13% Similarity=0.094 Sum_probs=43.9
Q ss_pred HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCC
Q psy6353 13 YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARP 73 (136)
Q Consensus 13 l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~ 73 (136)
+....+.||+|.++.++- +--|.|.|.|..+|-.|+.+++. ...|..+.|.|...
T Consensus 107 V~~~Ls~fGpI~SVT~cG-----rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsWqqr 161 (166)
T PF15023_consen 107 VIQRLSVFGPIQSVTLCG-----RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSWQQR 161 (166)
T ss_pred HHHHHHhcCCcceeeecC-----CceEEEEehhhHHHHHHHHhhcC-CCCCceEEeecccc
Confidence 445568899999997642 33589999999999999999855 67788899988653
No 171
>KOG0115|consensus
Probab=96.04 E-value=0.0087 Score=41.41 Aligned_cols=55 Identities=20% Similarity=0.236 Sum_probs=48.6
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc-cCCCceeeEEEEcCCHHHHHHHHHHH
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI-STAQSLGYGFVNYHRPEDAEKAINTL 56 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~-~~~~~kg~~fv~f~~~~~a~~a~~~~ 56 (136)
|||.||+.-++ +++-|++||++....++- ..++..+-++|.|...-.|..|....
T Consensus 34 l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~ 92 (275)
T KOG0115|consen 34 LYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRC 92 (275)
T ss_pred EEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHh
Confidence 79999999888 888999999998776666 88889999999999999999988765
No 172
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.76 E-value=0.011 Score=39.12 Aligned_cols=56 Identities=16% Similarity=0.242 Sum_probs=34.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhcC-CCce---EEEE-EEeCCCCCCc--cceEeecCccccc
Q psy6353 79 KGANLYVSGLPKHMSQQELESLFSP-YGRI---ITSR-ILCDNLATEN--GKYYSGLGGRERL 134 (136)
Q Consensus 79 ~~~~l~v~nl~~~~t~~~l~~~f~~-~G~v---~~~~-i~~~~~~~~~--~~~fv~f~~~e~~ 134 (136)
...+|.|++||+++|++++.+.+++ ++.- ..+. ...+...... .-||+.|.+.|.+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~ 68 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDL 68 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHH
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHH
Confidence 4568999999999999999999988 6765 2333 1222222222 2389999998875
No 173
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.75 E-value=0.033 Score=37.13 Aligned_cols=58 Identities=22% Similarity=0.339 Sum_probs=43.4
Q ss_pred HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHc--CceeCCceEEEEeeCCC
Q psy6353 13 YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLN--GLRLQNKTIKVSYARPS 74 (136)
Q Consensus 13 l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~--~~~~~g~~l~v~~~~~~ 74 (136)
|+++|..++.+......+ +-+-..|.|.+.+.|.+|...++ +..+.|..+++.++.+.
T Consensus 12 l~~l~~~~~~~~~~~~L~----sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 12 LEELFSTYDPPVQFSPLK----SFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp HHHHHHTT-SS-EEEEET----TTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred HHHHHHhcCCceEEEEcC----CCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 899999999988887665 44458899999999999999998 89999999999877543
No 174
>KOG0129|consensus
Probab=95.71 E-value=0.014 Score=44.07 Aligned_cols=55 Identities=13% Similarity=0.309 Sum_probs=40.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCC-------CCCCccceEeecCccccc
Q psy6353 79 KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN-------LATENGKYYSGLGGRERL 134 (136)
Q Consensus 79 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~-------~~~~~~~~fv~f~~~e~~ 134 (136)
..+++|+++||.+++|+.|...|..||.+ .+.++... ..|.-++.|.-|+++..+
T Consensus 258 ~S~KVFvGGlp~dise~~i~~~F~~FGs~-~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV 319 (520)
T KOG0129|consen 258 YSRKVFVGGLPWDITEAQINASFGQFGSV-KVDWPGKANSRGRAPPKGSYGYVFLVFEDERSV 319 (520)
T ss_pred cccceeecCCCccccHHHHHhhcccccce-EeecCCCccccccCCCCCcccEEEEEecchHHH
Confidence 56899999999999999999999999975 34444211 122223678888887654
No 175
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=95.71 E-value=0.011 Score=42.56 Aligned_cols=57 Identities=23% Similarity=0.411 Sum_probs=41.6
Q ss_pred CceEEEcCCCCCCCHHH----H--HHhhcCCCceEEEEEEeCC----CCCCccceEeecCccccccC
Q psy6353 80 GANLYVSGLPKHMSQQE----L--ESLFSPYGRIITSRILCDN----LATENGKYYSGLGGRERLRR 136 (136)
Q Consensus 80 ~~~l~v~nl~~~~t~~~----l--~~~f~~~G~v~~~~i~~~~----~~~~~~~~fv~f~~~e~~~~ 136 (136)
..-+||-+||+.+..++ | .+.|++||+|..+.+-+.. .+..+-|.|+.|.+.|+|.|
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAar 180 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAAR 180 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHH
Confidence 35689999999876555 2 5699999999987776543 12223456999999998864
No 176
>KOG2135|consensus
Probab=95.70 E-value=0.0087 Score=44.79 Aligned_cols=58 Identities=22% Similarity=0.231 Sum_probs=48.5
Q ss_pred HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCC
Q psy6353 13 YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSS 75 (136)
Q Consensus 13 l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~ 75 (136)
|...|.+||.|..|.+-. +.-.|.|+|.+..+|-.|.. .++..|.+|.|++.|..+..
T Consensus 390 ln~hfA~fG~i~n~qv~~----~~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnps~ 447 (526)
T KOG2135|consen 390 LNPHFAQFGEIENIQVDY----SSLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNPSP 447 (526)
T ss_pred hhhhhhhcCccccccccC----chhhheeeeeccccccchhc-cccceecCceeEEEEecCCc
Confidence 888999999999987644 23458999999998877766 68999999999999998754
No 177
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=95.46 E-value=0.0095 Score=34.37 Aligned_cols=47 Identities=23% Similarity=0.378 Sum_probs=30.2
Q ss_pred ceEEEcCCCCCCCHHHH----HHhhcCCC-ceEEEEEEeCCCCCCccceEeecCccccccC
Q psy6353 81 ANLYVSGLPKHMSQQEL----ESLFSPYG-RIITSRILCDNLATENGKYYSGLGGRERLRR 136 (136)
Q Consensus 81 ~~l~v~nl~~~~t~~~l----~~~f~~~G-~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~~ 136 (136)
..|+|.|||.+.+...+ +.+...|| +|..+ . .+-|.+.|.+.|.|+|
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v--~-------~~tAilrF~~~~~A~R 54 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV--S-------GGTAILRFPNQEFAER 54 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-----------TT-EEEEESSHHHHHH
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE--e-------CCEEEEEeCCHHHHHH
Confidence 46899999998877654 56667886 45444 1 2558999999998865
No 178
>KOG2416|consensus
Probab=95.41 E-value=0.0099 Score=45.73 Aligned_cols=66 Identities=15% Similarity=0.203 Sum_probs=51.1
Q ss_pred eeecCCChhhh---HHHHhccCC-CeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeC---CceEEEEee
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFS-DAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQ---NKTIKVSYA 71 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G-~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~---g~~l~v~~~ 71 (136)
|+|.||=.-|| |++++.+-| .|.+. ||- +-|..|||.|.+.++|.+...+|||..+. .+.|.+.+.
T Consensus 447 lhI~nLvRPFTlgQLkelL~rtgg~Vee~-WmD---kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf~ 519 (718)
T KOG2416|consen 447 LHIDNLVRPFTLGQLKELLGRTGGNVEEF-WMD---KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADFV 519 (718)
T ss_pred EeeecccccchHHHHHHHHhhccCchHHH-HHH---HhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeeec
Confidence 78999988888 788888554 45544 544 45677999999999999999999997763 566776654
No 179
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.05 E-value=0.081 Score=30.52 Aligned_cols=46 Identities=24% Similarity=0.503 Sum_probs=31.6
Q ss_pred eEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCccccc
Q psy6353 82 NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERL 134 (136)
Q Consensus 82 ~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~ 134 (136)
.+|--..|..+...||.++|++||.| .|..+-| ..|||.+..+|.+
T Consensus 10 HVFhltFPkeWK~~DI~qlFspfG~I-~VsWi~d------TSAfV~l~~r~~~ 55 (87)
T PF08675_consen 10 HVFHLTFPKEWKTSDIYQLFSPFGQI-YVSWIND------TSAFVALHNRDQA 55 (87)
T ss_dssp CEEEEE--TT--HHHHHHHCCCCCCE-EEEEECT------TEEEEEECCCHHH
T ss_pred eEEEEeCchHhhhhhHHHHhccCCcE-EEEEEcC------CcEEEEeecHHHH
Confidence 35544499999999999999999975 4555543 4579998888765
No 180
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=94.97 E-value=0.16 Score=30.94 Aligned_cols=42 Identities=14% Similarity=0.215 Sum_probs=33.5
Q ss_pred CeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCC
Q psy6353 22 DAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQN 63 (136)
Q Consensus 22 ~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g 63 (136)
.+..+++++....++-.+.+.|.+.++|+.....+||..+..
T Consensus 40 ~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 40 DIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred cEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 455667776333477789999999999999999999987754
No 181
>KOG0112|consensus
Probab=94.52 E-value=0.014 Score=46.82 Aligned_cols=57 Identities=16% Similarity=0.278 Sum_probs=49.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCcccc
Q psy6353 77 SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133 (136)
Q Consensus 77 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~ 133 (136)
...+.+|+++|++..+++.+|+..|..+|.|..+.+-+.+.+..+..+||.|.+...
T Consensus 369 ~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dm 425 (975)
T KOG0112|consen 369 FRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDM 425 (975)
T ss_pred hhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhcccc
Confidence 456789999999999999999999999999999999888777777889999877653
No 182
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=94.07 E-value=0.29 Score=28.30 Aligned_cols=45 Identities=20% Similarity=0.290 Sum_probs=32.4
Q ss_pred CChhhh---HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHc
Q psy6353 7 LNKLFT---YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLN 57 (136)
Q Consensus 7 l~~~~~---l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~ 57 (136)
.|.+.. |.++|+.||.| .|.++. -.-|||...+.+.|..++..+.
T Consensus 16 FPkeWK~~DI~qlFspfG~I-~VsWi~-----dTSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 16 FPKEWKTSDIYQLFSPFGQI-YVSWIN-----DTSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp --TT--HHHHHHHCCCCCCE-EEEEEC-----TTEEEEEECCCHHHHHHHHHHT
T ss_pred CchHhhhhhHHHHhccCCcE-EEEEEc-----CCcEEEEeecHHHHHHHHHHhc
Confidence 454443 99999999997 454543 1249999999999999988774
No 183
>KOG4574|consensus
Probab=94.03 E-value=0.038 Score=44.33 Aligned_cols=69 Identities=17% Similarity=0.200 Sum_probs=54.1
Q ss_pred eecCCChhhh---HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeC--CceEEEEeeCCCC
Q psy6353 3 YQTLLNKLFT---YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQ--NKTIKVSYARPSS 75 (136)
Q Consensus 3 ~v~nl~~~~~---l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~--g~~l~v~~~~~~~ 75 (136)
++.|.+-..+ |..+|+.||.+.+.+..+ .--.|.|+|.+.+.|..|.++++|+++. |-+.+|..+++..
T Consensus 302 ~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr----~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~ 375 (1007)
T KOG4574|consen 302 SLENNAVNLTSSSLATLCSDYGSVASAWTLR----DLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLP 375 (1007)
T ss_pred hhhcccccchHHHHHHHHHhhcchhhheecc----cccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccccc
Confidence 4455555444 899999999999998776 3346899999999999999999997764 7778887776543
No 184
>KOG1995|consensus
Probab=93.92 E-value=0.079 Score=38.42 Aligned_cols=56 Identities=14% Similarity=0.201 Sum_probs=45.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhcCCCceEE--------EEEEeCCCCCCccc-eEeecCcccc
Q psy6353 78 IKGANLYVSGLPKHMSQQELESLFSPYGRIIT--------SRILCDNLATENGK-YYSGLGGRER 133 (136)
Q Consensus 78 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~--------~~i~~~~~~~~~~~-~fv~f~~~e~ 133 (136)
....++||.++|.+++++++.+.|.++|.|.. +.|-+|..|+..++ +-|.|++.-.
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~ 128 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPA 128 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhh
Confidence 45678999999999999999999999998742 66777888877755 8888877543
No 185
>KOG2314|consensus
Probab=93.86 E-value=0.072 Score=41.02 Aligned_cols=58 Identities=17% Similarity=0.197 Sum_probs=47.4
Q ss_pred CCCceEEEcCCCCCC------CHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 78 IKGANLYVSGLPKHM------SQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 78 ~~~~~l~v~nl~~~~------t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
.....++|.|+|.-- -..-|..+|+++|++....++.+..+|..|..|+++++...|.
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~ 119 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAK 119 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHH
Confidence 345778999998532 2346778999999999999999999998888999999987663
No 186
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=93.82 E-value=0.29 Score=26.62 Aligned_cols=49 Identities=18% Similarity=0.112 Sum_probs=36.6
Q ss_pred eeecCCChhhh--HHHHhccC----CCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHH
Q psy6353 2 VYQTLLNKLFT--YEKVHLGF----SDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTL 56 (136)
Q Consensus 2 v~v~nl~~~~~--l~~~f~~~----G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~ 56 (136)
|++.+++..-| ++.+|..| ++ ..|.++..+ -|=|-|.+.+.|.+|+.+|
T Consensus 8 vhirGvd~lsT~dI~~y~~~y~~~~~~-~~IEWIdDt-----ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 8 VHIRGVDELSTDDIKAYFSEYFDEEGP-FRIEWIDDT-----SCNVVFKDEETAARALVAL 62 (62)
T ss_pred EEEEcCCCCCHHHHHHHHHHhcccCCC-ceEEEecCC-----cEEEEECCHHHHHHHHHcC
Confidence 56777877666 88999888 54 467776511 2668999999999998754
No 187
>KOG4285|consensus
Probab=93.28 E-value=0.31 Score=34.81 Aligned_cols=53 Identities=15% Similarity=0.145 Sum_probs=40.6
Q ss_pred HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEE-EEe
Q psy6353 13 YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIK-VSY 70 (136)
Q Consensus 13 l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~-v~~ 70 (136)
+..+|+++|.|...... +.--+-.|.|.+..+|++|+. .||..|+|..+. |+.
T Consensus 213 vL~~F~~cG~Vvkhv~~----~ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkp 266 (350)
T KOG4285|consen 213 VLNLFSRCGEVVKHVTP----SNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKP 266 (350)
T ss_pred HHHHHHhhCeeeeeecC----CCCceEEEEecchhHHHHhhh-hcCeeeccceEEeeee
Confidence 78899999998766432 333477899999999999999 589888876433 444
No 188
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=93.16 E-value=0.074 Score=33.90 Aligned_cols=79 Identities=15% Similarity=0.154 Sum_probs=58.8
Q ss_pred ceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCCCC------CCceEEEcCCCCC-CCHHHHHHhhcCCCce
Q psy6353 35 SLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESI------KGANLYVSGLPKH-MSQQELESLFSPYGRI 107 (136)
Q Consensus 35 ~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~~~------~~~~l~v~nl~~~-~t~~~l~~~f~~~G~v 107 (136)
..++..+.|.+.++++.++. .....+.+..+.+....|..+.. ..-=+.+.|||.. ++++-++.+-+.+|++
T Consensus 54 ~~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~~~~~~~~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~ 132 (153)
T PF14111_consen 54 GDNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSPDFNPSEVKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEP 132 (153)
T ss_pred CCCeEEEEEEeccceeEEEe-cccccccccchhhhhhcccccccccceeccchhhhhccCCHHHhhhHHHHHHHHhcCCe
Confidence 35789999999999999987 34566778888887666543211 1223667999987 5889999999999999
Q ss_pred EEEEEEe
Q psy6353 108 ITSRILC 114 (136)
Q Consensus 108 ~~~~i~~ 114 (136)
..+....
T Consensus 133 i~vD~~t 139 (153)
T PF14111_consen 133 IEVDENT 139 (153)
T ss_pred EEEEcCC
Confidence 8885443
No 189
>KOG0804|consensus
Probab=92.51 E-value=0.25 Score=37.13 Aligned_cols=63 Identities=10% Similarity=0.083 Sum_probs=49.9
Q ss_pred CeeecCCChhhhHHHHhccCC----CeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCC
Q psy6353 1 MVYQTLLNKLFTYEKVHLGFS----DAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQN 63 (136)
Q Consensus 1 ~v~v~nl~~~~~l~~~f~~~G----~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g 63 (136)
||.+--+|..++..++...+| .|.++++++..-.++=..+|.|.+..+|......+||..+..
T Consensus 76 mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 76 MLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred EEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 678888999999777777666 467788888222244568999999999999999999988764
No 190
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=91.85 E-value=1.2 Score=24.49 Aligned_cols=58 Identities=9% Similarity=0.126 Sum_probs=40.6
Q ss_pred ecCCChhhh-HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEE
Q psy6353 4 QTLLNKLFT-YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKV 68 (136)
Q Consensus 4 v~nl~~~~~-l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v 68 (136)
|.+.+..++ ++..+..|+-. .|.. ...| -||.|.+..+|++|....+|..+.+..+.+
T Consensus 7 vp~~~~~v~d~K~~Lr~y~~~-~I~~-----d~tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 7 VPVHGVTVEDFKKRLRKYRWD-RIRD-----DRTG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CCCCCccHHHHHHHHhcCCcc-eEEe-----cCCE-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 344444454 77778888753 3332 2235 479999999999999999998888776654
No 191
>KOG2591|consensus
Probab=91.27 E-value=1.1 Score=34.76 Aligned_cols=74 Identities=12% Similarity=0.252 Sum_probs=53.9
Q ss_pred HHHHHHHcCceeCCceEEEEeeCCCCCCCCCceEEEcCCCCCCCHHHHHHhhcC--CCceEEEEEEeCCCCCCccceEee
Q psy6353 50 EKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQQELESLFSP--YGRIITSRILCDNLATENGKYYSG 127 (136)
Q Consensus 50 ~~a~~~~~~~~~~g~~l~v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~--~G~v~~~~i~~~~~~~~~~~~fv~ 127 (136)
-.++....+..++.+-.+|.... ..+.+.++.||...-.++++.+|+. |.++++|....+ ..-|+.
T Consensus 151 ~Evlresp~VqvDekgekVrp~~------kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N------~nWyIT 218 (684)
T KOG2591|consen 151 VEVLRESPNVQVDEKGEKVRPNH------KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN------DNWYIT 218 (684)
T ss_pred HHHHhcCCCceeccCccccccCc------ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec------CceEEE
Confidence 33444455566666666665433 3356778999999999999999985 788888887654 345999
Q ss_pred cCcccccc
Q psy6353 128 LGGRERLR 135 (136)
Q Consensus 128 f~~~e~~~ 135 (136)
|+++++|-
T Consensus 219 fesd~DAQ 226 (684)
T KOG2591|consen 219 FESDTDAQ 226 (684)
T ss_pred eecchhHH
Confidence 99998863
No 192
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=91.17 E-value=0.95 Score=29.97 Aligned_cols=61 Identities=16% Similarity=0.159 Sum_probs=40.9
Q ss_pred eeecCCChhhhHHHHhccCCC----e---eEEE--EEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeC
Q psy6353 2 VYQTLLNKLFTYEKVHLGFSD----A---EICV--FLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQ 62 (136)
Q Consensus 2 v~v~nl~~~~~l~~~f~~~G~----v---~~~~--~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~ 62 (136)
|.|.+||...|..+++++..+ - ..+. ... ......+-|+|.|.+.+++......++|+.+.
T Consensus 10 vVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~ 81 (176)
T PF03467_consen 10 VVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFV 81 (176)
T ss_dssp EEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE
T ss_pred EEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEE
Confidence 578999999998888885554 2 2222 111 12223456999999999999999999997775
No 193
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=90.36 E-value=0.63 Score=25.30 Aligned_cols=51 Identities=16% Similarity=0.276 Sum_probs=36.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhcCC---CceEEEEEEeCCCCCCccceEeecCccccccC
Q psy6353 79 KGANLYVSGLPKHMSQQELESLFSPY---GRIITSRILCDNLATENGKYYSGLGGRERLRR 136 (136)
Q Consensus 79 ~~~~l~v~nl~~~~t~~~l~~~f~~~---G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~~ 136 (136)
...+|+|.+++. ++.+|++..|..| .....+.++-|. .+-|.|.+.+.++|
T Consensus 4 rpeavhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWIdDt------ScNvvf~d~~~A~~ 57 (62)
T PF10309_consen 4 RPEAVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWIDDT------SCNVVFKDEETAAR 57 (62)
T ss_pred eeceEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEecCC------cEEEEECCHHHHHH
Confidence 346799999865 7999999999999 234577777552 24577777776653
No 194
>KOG2202|consensus
Probab=89.93 E-value=0.031 Score=38.74 Aligned_cols=41 Identities=15% Similarity=0.170 Sum_probs=33.9
Q ss_pred HHHHHhhc-CCCceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 95 QELESLFS-PYGRIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 95 ~~l~~~f~-~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
+++...+. +||+|+.+++..+..-...|..||.|..+|+|.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae 124 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAE 124 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHH
Confidence 45555555 999999999998887778788999999999874
No 195
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=89.72 E-value=0.57 Score=26.25 Aligned_cols=43 Identities=30% Similarity=0.455 Sum_probs=24.5
Q ss_pred CeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEee
Q psy6353 22 DAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYA 71 (136)
Q Consensus 22 ~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~ 71 (136)
.|-.+.+.. .|+||+-.. +.|+.+++++++..+.|++++++.+
T Consensus 32 ~IG~I~I~~------~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 32 DIGRIDIFD------NFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GEEEEEE-S------S-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred hEEEEEEee------eEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 455666644 578888766 4788899999999999999998754
No 196
>KOG0804|consensus
Probab=89.07 E-value=1 Score=33.97 Aligned_cols=56 Identities=14% Similarity=0.214 Sum_probs=45.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhcCCC-ceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 79 KGANLYVSGLPKHMSQQELESLFSPYG-RIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 79 ~~~~l~v~nl~~~~t~~~l~~~f~~~G-~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
.++.|+|-.+|..++..|+-.++..+- .|.++++++|...+. -...++|.+.++|.
T Consensus 73 ~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnr-ymvLIkFr~q~da~ 129 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNR-YMVLIKFRDQADAD 129 (493)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCce-EEEEEEeccchhHH
Confidence 478999999999999999999998774 577899999654333 45788999888763
No 197
>KOG2068|consensus
Probab=87.08 E-value=0.45 Score=34.39 Aligned_cols=56 Identities=25% Similarity=0.341 Sum_probs=39.7
Q ss_pred CceEEEcCCCCCCC-HHHHH--HhhcCCCceEEEEEEeCC--CCCCc--cceEeecCcccccc
Q psy6353 80 GANLYVSGLPKHMS-QQELE--SLFSPYGRIITSRILCDN--LATEN--GKYYSGLGGRERLR 135 (136)
Q Consensus 80 ~~~l~v~nl~~~~t-~~~l~--~~f~~~G~v~~~~i~~~~--~~~~~--~~~fv~f~~~e~~~ 135 (136)
..-+|+-+|++... +..|+ +.|.+||.|..+..-+++ ..+.. -.+|+.|+.+|++.
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~ 139 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDAD 139 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhh
Confidence 35678888988764 44444 378999999999888877 22222 22899999977764
No 198
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=84.83 E-value=1.1 Score=31.99 Aligned_cols=55 Identities=15% Similarity=0.202 Sum_probs=42.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCC--------CCCCccceEeecCcccc
Q psy6353 79 KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN--------LATENGKYYSGLGGRER 133 (136)
Q Consensus 79 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~--------~~~~~~~~fv~f~~~e~ 133 (136)
.++.|...|+..+++-..+-..|-+||+|+++.++.+. ..+.....-+.|-+++.
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~ 76 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREI 76 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHH
Confidence 45778899999999999999999999999999999876 22223445666666654
No 199
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=84.56 E-value=2 Score=23.33 Aligned_cols=26 Identities=19% Similarity=0.250 Sum_probs=19.3
Q ss_pred HHHHHhhcCCCceEEEEEEeCCCCCC
Q psy6353 95 QELESLFSPYGRIITSRILCDNLATE 120 (136)
Q Consensus 95 ~~l~~~f~~~G~v~~~~i~~~~~~~~ 120 (136)
.+|+++|++.|+|..+.+-.-..+..
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~~eS~~~ 34 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNPYESDED 34 (62)
T ss_pred HHHHHHHHhcCcEEEEEEcccccCCC
Confidence 58999999999998776655443333
No 200
>KOG4849|consensus
Probab=83.81 E-value=0.33 Score=35.43 Aligned_cols=56 Identities=11% Similarity=0.104 Sum_probs=44.6
Q ss_pred CceEEEcCCCCCCCHHHHHHhhcCCC--ceEEEEEEeCCCCCCccc-eEeecCcccccc
Q psy6353 80 GANLYVSGLPKHMSQQELESLFSPYG--RIITSRILCDNLATENGK-YYSGLGGRERLR 135 (136)
Q Consensus 80 ~~~l~v~nl~~~~t~~~l~~~f~~~G--~v~~~~i~~~~~~~~~~~-~fv~f~~~e~~~ 135 (136)
...+||+||--.+|++||-+....-| .+..++...+..+|.+++ |.+...++.+.+
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~K 138 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVK 138 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHH
Confidence 35799999999999999999998877 466788888888887755 788887765543
No 201
>KOG4019|consensus
Probab=83.53 E-value=1.1 Score=29.76 Aligned_cols=111 Identities=16% Similarity=0.194 Sum_probs=69.6
Q ss_pred HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCc-eEEEEeeCCCCCCCCC--------ceE
Q psy6353 13 YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNK-TIKVSYARPSSESIKG--------ANL 83 (136)
Q Consensus 13 l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~-~l~v~~~~~~~~~~~~--------~~l 83 (136)
.+.+|.+|.+..-..+.+ +.+..-|.|.+++.|..|.-++++..+.|+ .+++-++++......+ .+-
T Consensus 32 ~~~lFrq~n~~~~fq~lr----sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~~~~~~~~q~L~pP~~eKq 107 (193)
T KOG4019|consen 32 FENLFRQINEDATFQLLR----SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQPGHPESNSQYLQPPEPEKQ 107 (193)
T ss_pred HHhHHhhhCcchHHHHHH----hhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccCCCccccccccCCCChhhc
Confidence 567788887765555544 566677999999999999998999999887 8888777765432221 111
Q ss_pred EE--------------cCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeec
Q psy6353 84 YV--------------SGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGL 128 (136)
Q Consensus 84 ~v--------------~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f 128 (136)
|+ ...++.. ..+|-...++.|.-....+..+...+.+...-+.-
T Consensus 108 FLISPPaSPPvgWe~~eda~P~~-n~dLl~~iq~~~~~e~~eLhn~~e~~P~ivvh~~~ 165 (193)
T KOG4019|consen 108 FLISPPASPPVGWEPIEDAPPVV-NQDLLAAIQKLGPGEKYELHNGTEKTPSIVVHVCE 165 (193)
T ss_pred eeecCCCCCCCCCcccccCCccc-cHHHHHHHHHhCccccccccCCCCCCCceEEEecc
Confidence 21 1112222 24555556667766666666666555544433333
No 202
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=82.83 E-value=1.1 Score=26.80 Aligned_cols=56 Identities=16% Similarity=0.231 Sum_probs=32.1
Q ss_pred CceEEEcCCCCCCCHHHHHHhhcCCCceEEEE-EEeC-------CCCCCccceEeecCccccccC
Q psy6353 80 GANLYVSGLPKHMSQQELESLFSPYGRIITSR-ILCD-------NLATENGKYYSGLGGRERLRR 136 (136)
Q Consensus 80 ~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~-i~~~-------~~~~~~~~~fv~f~~~e~~~~ 136 (136)
..-|.|-+.|+. ....+-+.|++||.|.... +.++ +......-..+.|+++.+|.|
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~r 69 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQR 69 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHH
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHH
Confidence 455788888888 6677888899999987664 2111 111111226788888877653
No 203
>KOG1996|consensus
Probab=82.77 E-value=1.8 Score=31.06 Aligned_cols=41 Identities=15% Similarity=0.155 Sum_probs=32.1
Q ss_pred HHHHHHhhcCCCceEEEEEEeCCCCCCccc--eEeecCccccc
Q psy6353 94 QQELESLFSPYGRIITSRILCDNLATENGK--YYSGLGGRERL 134 (136)
Q Consensus 94 ~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~--~fv~f~~~e~~ 134 (136)
++++++.+.+||+|..|.|...+....... .||+|+.-|++
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~a 342 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESA 342 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHH
Confidence 457788999999999998888765554433 79999988765
No 204
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.55 E-value=7.4 Score=25.06 Aligned_cols=57 Identities=14% Similarity=0.250 Sum_probs=43.1
Q ss_pred CceEEEcCCCCCCCHHHHHHhhcCC---CceEEEEEEeCC-----------CCCCccceEeecCccccccC
Q psy6353 80 GANLYVSGLPKHMSQQELESLFSPY---GRIITSRILCDN-----------LATENGKYYSGLGGRERLRR 136 (136)
Q Consensus 80 ~~~l~v~nl~~~~t~~~l~~~f~~~---G~v~~~~i~~~~-----------~~~~~~~~fv~f~~~e~~~~ 136 (136)
..++++.-+.+.+++++.++..+.= +++.++.+.+.. ..|.-..+||.|++.+.++|
T Consensus 87 ~~KI~~k~asqGISe~~a~~~i~kE~~~~e~~~V~Lg~e~~~PiWEV~y~dkeg~~s~~~vdFetG~~lk~ 157 (161)
T COG5353 87 DGKIYSKKASQGISEEDARAIISKEKAVKEIKSVTLGREKEKPIWEVTYLDKEGRLSFYYVDFETGKELKR 157 (161)
T ss_pred CCeEEEEehhcCCCHHHHHHHHhhhccccceeEEEEEeeCCceeEEEeecCccCcceEEEEEeccchhhhh
Confidence 3789999999999999999988754 566677766654 23333468999999887764
No 205
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=80.02 E-value=7.9 Score=23.60 Aligned_cols=56 Identities=18% Similarity=0.187 Sum_probs=36.2
Q ss_pred CCceEEEcCCCCCCC-HHHHHHhhcCCC-ceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 79 KGANLYVSGLPKHMS-QQELESLFSPYG-RIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 79 ~~~~l~v~nl~~~~t-~~~l~~~f~~~G-~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
.+..+.+-.+|+.++ .++|..+...+- .|..++|++|...+. -..-++|.+.+.|.
T Consensus 11 ~~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnr-ymVLikF~~~~~Ad 68 (110)
T PF07576_consen 11 RRSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNR-YMVLIKFRDQESAD 68 (110)
T ss_pred CCceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCce-EEEEEEECCHHHHH
Confidence 345566656666664 456666655553 566899999864322 44788999888764
No 206
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=79.15 E-value=5.1 Score=28.86 Aligned_cols=55 Identities=22% Similarity=0.286 Sum_probs=35.7
Q ss_pred EEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCCCCCCceEEEcCCCCCCCHHHHHHhh
Q psy6353 39 GFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQQELESLF 101 (136)
Q Consensus 39 ~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f 101 (136)
|||+|.+..+|+.|.+.+.... ++.+.+..+.+. ..+.=.|+..+..+..++..+
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP------~DI~W~NL~~~~~~r~~R~~~ 55 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEP------DDIIWENLSISSKQRFLRRII 55 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCc------ccccccccCCChHHHHHHHHH
Confidence 7999999999999998554332 344566555433 335567776665665555544
No 207
>KOG2416|consensus
Probab=74.33 E-value=1.1 Score=35.12 Aligned_cols=53 Identities=15% Similarity=0.240 Sum_probs=37.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhc-CCCceEEEEEEeCCCCCCccceEeecCccccc
Q psy6353 77 SIKGANLYVSGLPKHMSQQELESLFS-PYGRIITSRILCDNLATENGKYYSGLGGRERL 134 (136)
Q Consensus 77 ~~~~~~l~v~nl~~~~t~~~l~~~f~-~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~ 134 (136)
...+..|+|.||-...|..+|+.+++ .+|.|... ++ |+.... +||.+.+.|+|
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-Wm-DkIKSh---CyV~yss~eEA 494 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WM-DKIKSH---CYVSYSSVEEA 494 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHH-HH-HHhhcc---eeEecccHHHH
Confidence 34567899999999999999999999 55555544 33 322222 57888777765
No 208
>KOG2253|consensus
Probab=72.94 E-value=2.1 Score=33.83 Aligned_cols=61 Identities=11% Similarity=0.163 Sum_probs=47.9
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEE
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVS 69 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~ 69 (136)
|||+|+...+. ++.+....|-|.++.... |||..|........|+..++...++|+.+...
T Consensus 43 vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~-------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~ 106 (668)
T KOG2253|consen 43 VFVGNISYLVSQEFWKSILAKSGFVPSWKRDK-------FGFCEFLKHIGDLRASRLLTELNIDDQKLIEN 106 (668)
T ss_pred eEecchhhhhhHHHHHHHHhhCCcchhhhhhh-------hcccchhhHHHHHHHHHHhcccCCCcchhhcc
Confidence 68888887776 677777788777665432 89999999999999998888888888776654
No 209
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=72.74 E-value=7.3 Score=23.96 Aligned_cols=53 Identities=11% Similarity=0.092 Sum_probs=27.4
Q ss_pred CeeecCCChhh---------h---HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHH-HHHHHHH
Q psy6353 1 MVYQTLLNKLF---------T---YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPE-DAEKAIN 54 (136)
Q Consensus 1 ~v~v~nl~~~~---------~---l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~-~a~~a~~ 54 (136)
|+.+.|++... + |++.|+.|.++. +........+.|++.|.|.+.- .-..|+.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQGHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETTEEEEEEEEE--SSHHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCCCCcEEEEEEECCChHHHHHHHH
Confidence 56677775433 1 888899999874 5555534457899999997644 3333443
No 210
>KOG2591|consensus
Probab=72.15 E-value=8.4 Score=30.24 Aligned_cols=60 Identities=17% Similarity=0.222 Sum_probs=39.1
Q ss_pred ecCCChhhh---HHHHhcc--CCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcC--ceeCCceEEE
Q psy6353 4 QTLLNKLFT---YEKVHLG--FSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNG--LRLQNKTIKV 68 (136)
Q Consensus 4 v~nl~~~~~---l~~~f~~--~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~--~~~~g~~l~v 68 (136)
+.-||+... ++.+|+- +-++++|..-. +.+ =||+|++..||+.|.+.|.. .+|.|++|..
T Consensus 180 lREIpettp~e~Vk~lf~~encPk~iscefa~----N~n-WyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 180 LREIPETTPIEVVKALFKGENCPKVISCEFAH----NDN-WYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred EeecCCCChHHHHHHHhccCCCCCceeeeeee----cCc-eEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 344555444 5667754 55777776544 122 58999999999999876643 5667776543
No 211
>KOG4410|consensus
Probab=69.31 E-value=18 Score=26.09 Aligned_cols=50 Identities=16% Similarity=0.281 Sum_probs=39.1
Q ss_pred ceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCccccc
Q psy6353 81 ANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERL 134 (136)
Q Consensus 81 ~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~ 134 (136)
..+++.|||.++.-.||+..+.+-|- .-..|.+ .|..+.+|..|.++..+
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~-~pm~isw---kg~~~k~flh~~~~~~~ 380 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKREC-TPMSISW---KGHFGKCFLHFGNRKGV 380 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCC-CceeEee---ecCCcceeEecCCccCC
Confidence 56999999999999999999987653 2345555 36777799999987654
No 212
>KOG2193|consensus
Probab=69.12 E-value=4.2 Score=30.80 Aligned_cols=49 Identities=18% Similarity=0.321 Sum_probs=32.2
Q ss_pred ceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCccccc
Q psy6353 81 ANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERL 134 (136)
Q Consensus 81 ~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~ 134 (136)
.++|++||.+..+..|+.++|..--...+-..+ -.++.+||+..++.-+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl-----~k~gyafvd~pdq~wa 50 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFL-----VKSGYAFVDCPDQQWA 50 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCccee-----eecceeeccCCchhhh
Confidence 468999999999999999999754111111111 1236678888776543
No 213
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=67.79 E-value=12 Score=24.09 Aligned_cols=51 Identities=14% Similarity=0.069 Sum_probs=32.9
Q ss_pred CCCCceEEEcCCCCCC----CHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCcccc
Q psy6353 77 SIKGANLYVSGLPKHM----SQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133 (136)
Q Consensus 77 ~~~~~~l~v~nl~~~~----t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~ 133 (136)
...-.+|.|+=+..++ +-..+...++.||+|.++-++.. ..|-|.|.+..+
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGr------qsavVvF~d~~S 137 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGR------QSAVVVFKDITS 137 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCC------ceEEEEehhhHH
Confidence 3455677775555444 44455566789999999877632 346788877544
No 214
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=67.79 E-value=9.9 Score=27.36 Aligned_cols=68 Identities=10% Similarity=0.152 Sum_probs=44.4
Q ss_pred ecCCChhhhHHHH---hccCCCeeEEEEEc-c--------CCCceeeEEEEcCCHHHHHHHH----HHHcC--ceeCCce
Q psy6353 4 QTLLNKLFTYEKV---HLGFSDAEICVFLI-S--------TAQSLGYGFVNYHRPEDAEKAI----NTLNG--LRLQNKT 65 (136)
Q Consensus 4 v~nl~~~~~l~~~---f~~~G~v~~~~~~~-~--------~~~~kg~~fv~f~~~~~a~~a~----~~~~~--~~~~g~~ 65 (136)
.+|+..+++|+.+ |.+||+|.+|.++. . .........+.|-+.+.+-... +.++. ..+....
T Consensus 20 feNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~L~S~~ 99 (309)
T PF10567_consen 20 FENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTKLKSES 99 (309)
T ss_pred HhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 4677777775544 67899999999998 3 1233456789999888765543 23332 4455666
Q ss_pred EEEEee
Q psy6353 66 IKVSYA 71 (136)
Q Consensus 66 l~v~~~ 71 (136)
+++.+.
T Consensus 100 L~lsFV 105 (309)
T PF10567_consen 100 LTLSFV 105 (309)
T ss_pred eeEEEE
Confidence 666543
No 215
>CHL00030 rpl23 ribosomal protein L23
Probab=67.24 E-value=20 Score=21.12 Aligned_cols=53 Identities=11% Similarity=0.125 Sum_probs=35.4
Q ss_pred eEEEcCCCCCCCHHHHHHhhcC-CC-ceEEEEEEeCCCCCC-----------ccceEeecCccccc
Q psy6353 82 NLYVSGLPKHMSQQELESLFSP-YG-RIITSRILCDNLATE-----------NGKYYSGLGGRERL 134 (136)
Q Consensus 82 ~l~v~nl~~~~t~~~l~~~f~~-~G-~v~~~~i~~~~~~~~-----------~~~~fv~f~~~e~~ 134 (136)
.-|+--++..++..++++.+.. || .|..++...-+.... -+-|||.+...+.+
T Consensus 20 n~y~F~V~~~anK~eIK~avE~lf~VkV~~VNt~~~~~k~kr~~~~~G~~~~~KKAiVtL~~g~~I 85 (93)
T CHL00030 20 NQYTFDVDSGSTKTEIKHWIELFFGVKVIAVNSHRLPRKKRRMGPIMGHKMHYKRMIITLQPGYSI 85 (93)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEcCCCccccCCcccccCCcEEEEEEcCCcCEe
Confidence 4556667899999999988876 45 466676655543311 13388888877654
No 216
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=66.65 E-value=24 Score=20.72 Aligned_cols=53 Identities=15% Similarity=0.224 Sum_probs=34.4
Q ss_pred eEEEcCCCCCCCHHHHHHhhcC-CC-ceEEEEEEeCCC--------CC---CccceEeecCccccc
Q psy6353 82 NLYVSGLPKHMSQQELESLFSP-YG-RIITSRILCDNL--------AT---ENGKYYSGLGGRERL 134 (136)
Q Consensus 82 ~l~v~nl~~~~t~~~l~~~f~~-~G-~v~~~~i~~~~~--------~~---~~~~~fv~f~~~e~~ 134 (136)
.-++-.++..++..++++.+.. || +|..|+...-+. .| .-+.|||.+...+.+
T Consensus 21 n~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~~~~gk~kr~~~~~g~~~~~KKA~VtL~~g~~i 86 (92)
T PRK05738 21 NKYVFEVAPDATKPEIKAAVEKLFGVKVESVNTLNVKGKTKRFGRRIGKRSDWKKAIVTLAEGQKI 86 (92)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHcCCceeEEEEEEeCCceeeecccccccCCcEEEEEEcCCCCEE
Confidence 3555557899999999998886 55 455665544431 11 114489988877654
No 217
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=61.46 E-value=19 Score=20.60 Aligned_cols=35 Identities=20% Similarity=0.251 Sum_probs=24.1
Q ss_pred CeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCc
Q psy6353 22 DAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGL 59 (136)
Q Consensus 22 ~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~ 59 (136)
.|.++..+ ..-+||-||+=.+.+++..|++.+.+.
T Consensus 33 ~I~Si~~~---~~lkGyIyVEA~~~~~V~~ai~gi~~i 67 (84)
T PF03439_consen 33 NIYSIFAP---DSLKGYIYVEAERESDVKEAIRGIRHI 67 (84)
T ss_dssp ---EEEE----TTSTSEEEEEESSHHHHHHHHTT-TTE
T ss_pred ceEEEEEe---CCCceEEEEEeCCHHHHHHHHhcccce
Confidence 34444433 368999999999999999998876553
No 218
>KOG4008|consensus
Probab=59.30 E-value=7 Score=27.19 Aligned_cols=32 Identities=16% Similarity=0.337 Sum_probs=27.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhcCCCceEE
Q psy6353 78 IKGANLYVSGLPKHMSQQELESLFSPYGRIIT 109 (136)
Q Consensus 78 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~ 109 (136)
....++|+-|+|...|++.|.++.++.|-+..
T Consensus 38 ~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~ 69 (261)
T KOG4008|consen 38 NEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQE 69 (261)
T ss_pred ccccceeeecccccccHHHHHHHHHHhhhhhh
Confidence 35678999999999999999999999985544
No 219
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=56.23 E-value=20 Score=20.32 Aligned_cols=52 Identities=10% Similarity=0.128 Sum_probs=36.8
Q ss_pred eEEEcCCCCCCCHHHHHHhhcC-CC-ceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 82 NLYVSGLPKHMSQQELESLFSP-YG-RIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 82 ~l~v~nl~~~~t~~~l~~~f~~-~G-~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
.-|+-.++..++..+++..+.. || +|..++...-+ +.-+.|||.+...+.|.
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~--~~~KKA~VtL~~g~~a~ 68 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITP--RGEKKAYVKLAEEYAAE 68 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC--CCceEEEEEECCCCcHH
Confidence 3555567899999999988875 45 56677766554 23366999998777653
No 220
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=55.94 E-value=19 Score=20.81 Aligned_cols=51 Identities=8% Similarity=0.116 Sum_probs=36.6
Q ss_pred EEEcCCCCCCCHHHHHHhhcC-CC-ceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 83 LYVSGLPKHMSQQELESLFSP-YG-RIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 83 l~v~nl~~~~t~~~l~~~f~~-~G-~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
-|.-.++..++..++++.+.. || +|..|+...-+ +.-+.|||.+...+.|.
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~--~~~KKA~V~L~~g~~A~ 75 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITP--KGEKKAYVKLAEEYDAE 75 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC--CCcEEEEEEeCCCCcHH
Confidence 445557889999999998886 45 56677766554 23366999998877664
No 221
>PF07876 Dabb: Stress responsive A/B Barrel Domain; InterPro: IPR013097 The stress-response A/B barrel domain is found in a class of stress-response proteins in plants. It is also found in some bacterial fructose-bisphosphate aldolase such as at the C terminus of a fructose 1,6-bisphosphate aldolase from Hydrogenophilus thermoluteolus (Q9ZA13 from SWISSPROT) []. Q93NG5 from SWISSPROT is found in the pA01 plasmid, which encodes genes for molybdopterin uptake and degradation of plant alkaloid nicotine. The stress-response A/B barrel domain forms a very stable dimer. This dimer belongs to the superfamily of dimeric alpha+beta barrels in which the two beta-sheets form a beta-barrel. The two molecules in the dimer are related by a 2-fold axis parallel to helix H1 and beta-strands B3 and B4. C-terminal residues extending from the beta4 strand of each monomer wrap around and connect with the beta2 strand and alpha1 helix of the opposing monomer to form the dimer interface [, , ].The outer surface of the beta-sheets of the two molecules forms a beta-barrel-like structure defining a central pore. The function of the stress-response A/B barrel domain is unknown [, , ], but it is upregulated in response to salt stress in Populus balsamifera (balsam poplar) []. Some proteins known to contain a stress response A/B barrel domain are listed below: - Arabidopsis thaliana At3g17210 - Arabidopsis thaliana At5g22580 -Populus tremula stable protein 1 (SP-1)(Populus species), a thermostable stress-responsive protein. - Pseudomonas hydrogenothermophila fructose 1,6-bisphosphate aldolase (cbbA). The structure of one of these proteins has been solved (Q9LUV2 from SWISSPROT) and the domain forms an alpha-beta barrel dimer [].; PDB: 3BB5_E 3FMB_A 3BDE_B 2QYC_A 1Q53_B 2Q3P_A 1Q4R_A 3BN7_A 3BGU_B 1RJJ_B ....
Probab=54.40 E-value=29 Score=19.85 Aligned_cols=49 Identities=14% Similarity=0.198 Sum_probs=32.3
Q ss_pred CCCCCCCHHHHHHhh-------cCCCceEEEEEEeCCCCCC-----ccceEeecCcccccc
Q psy6353 87 GLPKHMSQQELESLF-------SPYGRIITSRILCDNLATE-----NGKYYSGLGGRERLR 135 (136)
Q Consensus 87 nl~~~~t~~~l~~~f-------~~~G~v~~~~i~~~~~~~~-----~~~~fv~f~~~e~~~ 135 (136)
.+.+.++++++.++. .....|.++.+.++..... .-+..++|+|.|+++
T Consensus 8 klk~~~~~~~~~~~~~~l~~l~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~~~l~ 68 (97)
T PF07876_consen 8 KLKPDATEEEIEEVLEALRALKDKIPGIVSFEVGRNFSPEDLAKGYDHALVSTFESEEDLD 68 (97)
T ss_dssp EESTTTCHHHHHHHHHHHHHHHHHSTTECEEEEEEESSTSSTSTT-SEEEEEEESSHHHHH
T ss_pred EECCCCCHHHHHHHHHHHHhcccCCCceEEEEEEcccCcccccCCCcEEEEEEECCHHHHH
Confidence 366677777664433 4556788888777754443 233789999998764
No 222
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=48.17 E-value=52 Score=19.21 Aligned_cols=43 Identities=14% Similarity=0.090 Sum_probs=24.5
Q ss_pred eeecCCChhhh--HHHHhccC--CCeeEEEEEccCCCceeeEEEEcCC
Q psy6353 2 VYQTLLNKLFT--YEKVHLGF--SDAEICVFLISTAQSLGYGFVNYHR 45 (136)
Q Consensus 2 v~v~nl~~~~~--l~~~f~~~--G~v~~~~~~~~~~~~kg~~fv~f~~ 45 (136)
|||++++..+. |=+...+. +. -++.+...+....||.|-+..+
T Consensus 28 VyVg~~s~rVRe~lW~~v~~~~~~~-G~avm~~~~~~e~G~~~~t~G~ 74 (87)
T TIGR01873 28 VYVGGVSASVRERIWDYLAQHCPPK-GSLVITWSSNTCPGFEFFTLGE 74 (87)
T ss_pred cEEcCCCHHHHHHHHHHHHHhCCCC-ccEEEEEeCCCCCCcEEEecCC
Confidence 68888888776 32233332 32 2333444444466888887754
No 223
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=47.78 E-value=53 Score=19.11 Aligned_cols=43 Identities=14% Similarity=0.142 Sum_probs=24.1
Q ss_pred eeecCCChhhh--HHHHhccCCCeeEEEEEccCCCceeeEEEEcC
Q psy6353 2 VYQTLLNKLFT--YEKVHLGFSDAEICVFLISTAQSLGYGFVNYH 44 (136)
Q Consensus 2 v~v~nl~~~~~--l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~ 44 (136)
|||++++..+. |=+....+-+--++.++.......||+|-+.-
T Consensus 28 VyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~neqG~~~~t~G 72 (86)
T PF09707_consen 28 VYVGNVSARVRERLWERVTEWIGDGSAVMVWSDNNEQGFDFRTLG 72 (86)
T ss_pred cEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccCCCCCEEEEEeC
Confidence 68888888776 32333332222334444422237788887773
No 224
>KOG2891|consensus
Probab=45.83 E-value=16 Score=26.22 Aligned_cols=25 Identities=16% Similarity=-0.002 Sum_probs=20.0
Q ss_pred CCChhhhHHHHhccCCCeeEEEEEc
Q psy6353 6 LLNKLFTYEKVHLGFSDAEICVFLI 30 (136)
Q Consensus 6 nl~~~~~l~~~f~~~G~v~~~~~~~ 30 (136)
.||..-.|+..|+.||.|..+.++-
T Consensus 171 dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 171 DLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred cCChHHHHHHHHHHhccceecCCcc
Confidence 4555555999999999999887765
No 225
>KOG2253|consensus
Probab=45.63 E-value=7.3 Score=31.02 Aligned_cols=48 Identities=10% Similarity=0.022 Sum_probs=39.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCcccc
Q psy6353 78 IKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133 (136)
Q Consensus 78 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~ 133 (136)
....++||+|+...+..+-++.+...+|-|.++.... ++|.+|...+.
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~--------fgf~~f~~~~~ 85 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK--------FGFCEFLKHIG 85 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh--------hcccchhhHHH
Confidence 3567899999999999999999999999988776553 67888877654
No 226
>PF14893 PNMA: PNMA
Probab=45.33 E-value=22 Score=26.21 Aligned_cols=51 Identities=18% Similarity=0.260 Sum_probs=32.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhc----CCCceEEEEEEeCCCCCCccceEeecCc
Q psy6353 79 KGANLYVSGLPKHMSQQELESLFS----PYGRIITSRILCDNLATENGKYYSGLGG 130 (136)
Q Consensus 79 ~~~~l~v~nl~~~~t~~~l~~~f~----~~G~v~~~~i~~~~~~~~~~~~fv~f~~ 130 (136)
..+.|.|.+||.+++++++.+.++ +.|...-..-+.....+ .+.++|+|..
T Consensus 17 ~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~-~~aalve~~e 71 (331)
T PF14893_consen 17 PQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREEN-AKAALVEFAE 71 (331)
T ss_pred hhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcc-cceeeeeccc
Confidence 346689999999999999988765 34543332222222222 4667888764
No 227
>KOG4213|consensus
Probab=44.08 E-value=55 Score=21.98 Aligned_cols=35 Identities=14% Similarity=0.006 Sum_probs=27.8
Q ss_pred CCeeEEEEEc-cCC--CceeeEEEEcCCHHHHHHHHHH
Q psy6353 21 SDAEICVFLI-STA--QSLGYGFVNYHRPEDAEKAINT 55 (136)
Q Consensus 21 G~v~~~~~~~-~~~--~~kg~~fv~f~~~~~a~~a~~~ 55 (136)
|.+..+..-+ ..+ ..+|--||+|.+.+.|.+++.+
T Consensus 132 ~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 132 GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 7887777666 444 5789999999999999998763
No 228
>KOG2295|consensus
Probab=42.99 E-value=4.1 Score=31.81 Aligned_cols=64 Identities=16% Similarity=0.162 Sum_probs=45.8
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCce
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKT 65 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~ 65 (136)
||+.|++..++ |+.+++.+.-+..+.+-. .......+++++|...-....|+.++|++.+....
T Consensus 234 ll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~ 302 (648)
T KOG2295|consen 234 LLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNF 302 (648)
T ss_pred HHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccccc
Confidence 46778888887 777888777666655544 33456677899998877777788888887665443
No 229
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=42.64 E-value=64 Score=19.25 Aligned_cols=44 Identities=16% Similarity=0.219 Sum_probs=24.7
Q ss_pred eeecCCChhhh--H-HHHhccCCCeeEEEEEccCCCceeeEEEEcCCH
Q psy6353 2 VYQTLLNKLFT--Y-EKVHLGFSDAEICVFLISTAQSLGYGFVNYHRP 46 (136)
Q Consensus 2 v~v~nl~~~~~--l-~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~ 46 (136)
|||++++..+. | +.+.+.++. -++.++..+....||+|-+..+.
T Consensus 30 VyVg~~S~rVRd~lW~~v~~~~~~-G~avmv~~~~~eqG~~~~t~G~~ 76 (97)
T PRK11558 30 VYVGDVSRRIREMIWQQVTQLAEE-GNVVMAWATNTESGFEFQTFGEN 76 (97)
T ss_pred cEEcCCCHHHHHHHHHHHHHhCCC-CcEEEEEcCCCCCCcEEEecCCC
Confidence 78898887776 2 222233343 33334442334449998887653
No 230
>KOG2135|consensus
Probab=42.03 E-value=14 Score=28.47 Aligned_cols=49 Identities=14% Similarity=0.192 Sum_probs=34.6
Q ss_pred ceEEEcCCCCCC-CHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCccccc
Q psy6353 81 ANLYVSGLPKHM-SQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERL 134 (136)
Q Consensus 81 ~~l~v~nl~~~~-t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~ 134 (136)
+.|-+.-.|+.+ +-.+|...|.+||+|..|.+-... --|-|.|.++-++
T Consensus 373 s~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~-----~~a~vTF~t~aea 422 (526)
T KOG2135|consen 373 SPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS-----LHAVVTFKTRAEA 422 (526)
T ss_pred chhhhhccCCCCchHhhhhhhhhhcCccccccccCch-----hhheeeeeccccc
Confidence 445555566665 778999999999999998776542 2245777766554
No 231
>PF05166 YcgL: YcgL domain; InterPro: IPR007840 This family of proteins formerly called DUF709 includes the Escherichia coli gene ycgL. Homologues of YcgL are found in gammaproteobacteria. The structure of this protein shows a novel alpha/beta/alpha sandwich structure []. The proteins in this entry are functionally uncharacterised.; PDB: 2H7A_A.
Probab=41.71 E-value=57 Score=18.41 Aligned_cols=54 Identities=13% Similarity=0.159 Sum_probs=28.5
Q ss_pred CeeecCCChhhh-HHHHhccCCCeeEEEEEc-cCCCceeeEEEEcCCHHHHHHHHHHHcCce
Q psy6353 1 MVYQTLLNKLFT-YEKVHLGFSDAEICVFLI-STAQSLGYGFVNYHRPEDAEKAINTLNGLR 60 (136)
Q Consensus 1 ~v~v~nl~~~~~-l~~~f~~~G~v~~~~~~~-~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~ 60 (136)
|||+..-+..-. -+.+...||+...+..+. ...+. +.-.|.+.+.++++. +|..
T Consensus 13 YLyv~k~ddf~~vPe~Ll~~fG~p~~vm~l~L~~~r~-----La~~d~~~V~~~l~~-~Gfy 68 (74)
T PF05166_consen 13 YLYVPKRDDFSRVPEALLEMFGKPQFVMELNLTPERK-----LARADAEKVLAALEE-QGFY 68 (74)
T ss_dssp EEEESSSS---SS-HHHHHHH-SEEEEEEE-SSS---------SSS-HHHHHHHHHH-TSEE
T ss_pred EEEEEcCCChhhCcHHHHHhcCCCeEEEEecCCCCce-----eccCCHHHHHHHHHh-CCEE
Confidence 567765444333 577788899988776655 33332 334577787777774 4643
No 232
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=41.59 E-value=33 Score=18.87 Aligned_cols=62 Identities=16% Similarity=0.240 Sum_probs=37.2
Q ss_pred eeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCCCCCCceEEEcCCCCCCCHHHHHHhhcCCC
Q psy6353 37 GYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPYG 105 (136)
Q Consensus 37 g~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G 105 (136)
.+.++.|.+..+|-+|-+.+....+..+ +.+.. + +-..++-+-+. ++. -+.+.+.++++..|
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~~---liP~P-~-~i~~~CG~al~-~~~-~d~~~i~~~l~~~~ 63 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPVR---LIPTP-R-EISAGCGLALR-FEP-EDLEKIKEILEENG 63 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcEE---EeCCC-h-hccCCCCEEEE-ECh-hhHHHHHHHHHHCC
Confidence 4688999999999999877655444333 22211 1 11244555544 222 46677777777765
No 233
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=41.12 E-value=50 Score=21.22 Aligned_cols=33 Identities=18% Similarity=0.117 Sum_probs=25.6
Q ss_pred eeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcC
Q psy6353 23 AEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNG 58 (136)
Q Consensus 23 v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~ 58 (136)
+.++.++. ..+||-||+....+++..++..+.+
T Consensus 36 i~~i~vp~---~fpGYVfVe~~~~~~~~~~i~~v~~ 68 (153)
T PRK08559 36 IYAILAPP---ELKGYVLVEAESKGAVEEAIRGIPH 68 (153)
T ss_pred EEEEEccC---CCCcEEEEEEEChHHHHHHHhcCCC
Confidence 55666655 5789999999988888888876654
No 234
>KOG2891|consensus
Probab=40.89 E-value=38 Score=24.37 Aligned_cols=35 Identities=23% Similarity=0.432 Sum_probs=26.0
Q ss_pred CCceEEEcCCCC------------CCCHHHHHHhhcCCCceEEEEEE
Q psy6353 79 KGANLYVSGLPK------------HMSQQELESLFSPYGRIITSRIL 113 (136)
Q Consensus 79 ~~~~l~v~nl~~------------~~t~~~l~~~f~~~G~v~~~~i~ 113 (136)
...++++.+||- -.+++-|+..|..||.|..+.|+
T Consensus 148 rpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 148 RPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred CCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCc
Confidence 345666666663 24778899999999999988765
No 235
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=40.87 E-value=56 Score=19.03 Aligned_cols=51 Identities=12% Similarity=0.160 Sum_probs=32.6
Q ss_pred EEEcCCCCCCCHHHHHHhhcC-CC-ceEEEEEEeCC-----CCCC------ccceEeecCcccc
Q psy6353 83 LYVSGLPKHMSQQELESLFSP-YG-RIITSRILCDN-----LATE------NGKYYSGLGGRER 133 (136)
Q Consensus 83 l~v~nl~~~~t~~~l~~~f~~-~G-~v~~~~i~~~~-----~~~~------~~~~fv~f~~~e~ 133 (136)
-+.-.+|.+++..+|++.+.. || +|.+|+...-+ .+.. .+.|||.+...+.
T Consensus 22 ~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~~gk~kR~g~~~g~~~~~KKaiVtL~~~~~ 85 (91)
T PF00276_consen 22 QYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNYPGKKKRKGKFVGKTKDYKKAIVTLKEGDK 85 (91)
T ss_dssp EEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEETSEEEESSSCEEEE-EEEEEEEEESTTSC
T ss_pred EEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEeCCCceEeCCccccCCCcEEEEEEeCCCCc
Confidence 445557899999999998874 45 45566655444 1111 1347888887654
No 236
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=40.22 E-value=60 Score=17.75 Aligned_cols=33 Identities=21% Similarity=0.274 Sum_probs=23.0
Q ss_pred CHHHHHHhhcCCCceEEEEEEeCCCCCCccceEe
Q psy6353 93 SQQELESLFSPYGRIITSRILCDNLATENGKYYS 126 (136)
Q Consensus 93 t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv 126 (136)
-+..|...|-+-.+|..+.+.-.+.-++ |+|||
T Consensus 31 ~e~eler~fl~~P~v~e~~l~EKKri~~-G~gyV 63 (64)
T PF13046_consen 31 VEVELERHFLPLPEVKEVALYEKKRIRK-GAGYV 63 (64)
T ss_pred HHHHhhhhccCCCCceEEEEEEEEeeeC-CceeE
Confidence 4556777887778888888876654444 66776
No 237
>PHA01632 hypothetical protein
Probab=38.63 E-value=26 Score=18.57 Aligned_cols=21 Identities=14% Similarity=0.490 Sum_probs=16.7
Q ss_pred EEEcCCCCCCCHHHHHHhhcC
Q psy6353 83 LYVSGLPKHMSQQELESLFSP 103 (136)
Q Consensus 83 l~v~nl~~~~t~~~l~~~f~~ 103 (136)
+.|..+|...|+++|+..+.+
T Consensus 19 ilieqvp~kpteeelrkvlpk 39 (64)
T PHA01632 19 ILIEQVPQKPTEEELRKVLPK 39 (64)
T ss_pred EehhhcCCCCCHHHHHHHHHH
Confidence 445789999999999987643
No 238
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=36.33 E-value=86 Score=18.09 Aligned_cols=24 Identities=4% Similarity=0.016 Sum_probs=18.6
Q ss_pred CeeEEEEEc--cCCCceeeEEEEcCC
Q psy6353 22 DAEICVFLI--STAQSLGYGFVNYHR 45 (136)
Q Consensus 22 ~v~~~~~~~--~~~~~kg~~fv~f~~ 45 (136)
+|.++++-. ..++-+|+|=|+|.+
T Consensus 2 ~itdVri~~~~~~~~lka~asV~~dd 27 (84)
T PF04026_consen 2 KITDVRIRKIEPEGKLKAFASVTFDD 27 (84)
T ss_dssp -EEEEEEEETTSSSSEEEEEEEEETT
T ss_pred ccEEEEEEEecCCCCEEEEEEEEECC
Confidence 356777777 458889999999986
No 239
>COG5507 Uncharacterized conserved protein [Function unknown]
Probab=36.30 E-value=61 Score=19.42 Aligned_cols=23 Identities=9% Similarity=0.322 Sum_probs=18.8
Q ss_pred CceeeEEEEcCCHHHHHHHHHHH
Q psy6353 34 QSLGYGFVNYHRPEDAEKAINTL 56 (136)
Q Consensus 34 ~~kg~~fv~f~~~~~a~~a~~~~ 56 (136)
.---|++++|.+.+..+++..++
T Consensus 64 E~VvFsW~~Y~skq~rDA~~~km 86 (117)
T COG5507 64 EEVVFSWIEYPSKQVRDAANAKM 86 (117)
T ss_pred cEEEEEEEEcCchhHHHHHHHHh
Confidence 34458999999999999998765
No 240
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=36.08 E-value=78 Score=18.92 Aligned_cols=38 Identities=26% Similarity=0.314 Sum_probs=21.4
Q ss_pred HHHhccCCCeeEEEEEc------cCCCceeeEEEEcCCHHHHHHH
Q psy6353 14 EKVHLGFSDAEICVFLI------STAQSLGYGFVNYHRPEDAEKA 52 (136)
Q Consensus 14 ~~~f~~~G~v~~~~~~~------~~~~~kg~~fv~f~~~~~a~~a 52 (136)
+.+-+.|+.=.+..++. -.|++.|||.| |.+.+.+...
T Consensus 38 ekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~kk~ 81 (99)
T PRK01178 38 KKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERARKI 81 (99)
T ss_pred HHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHHHhh
Confidence 34445566333333333 34678888866 7777766554
No 241
>PF14191 YodL: YodL-like
Probab=33.30 E-value=54 Score=19.74 Aligned_cols=22 Identities=27% Similarity=0.324 Sum_probs=17.2
Q ss_pred CeeecCCChhhhHHHHhccCCC
Q psy6353 1 MVYQTLLNKLFTYEKVHLGFSD 22 (136)
Q Consensus 1 ~v~v~nl~~~~~l~~~f~~~G~ 22 (136)
+||.+.|....+|+++|.+|..
T Consensus 40 ~VY~~~l~~~~~Le~iy~~FN~ 61 (103)
T PF14191_consen 40 LVYDGELDHTETLEDIYERFNV 61 (103)
T ss_pred EEEEEecCCCCCHHHHHHHhCc
Confidence 4788888866669999988864
No 242
>PRK14998 cold shock-like protein CspD; Provisional
Probab=31.99 E-value=26 Score=19.56 Aligned_cols=12 Identities=25% Similarity=0.628 Sum_probs=9.1
Q ss_pred CceeeEEEEcCC
Q psy6353 34 QSLGYGFVNYHR 45 (136)
Q Consensus 34 ~~kg~~fv~f~~ 45 (136)
..||||||+=.+
T Consensus 11 ~~kGfGFI~~~~ 22 (73)
T PRK14998 11 NAKGFGFICPEG 22 (73)
T ss_pred CCCceEEEecCC
Confidence 468999997654
No 243
>PRK09937 stationary phase/starvation inducible regulatory protein CspD; Provisional
Probab=31.65 E-value=28 Score=19.54 Aligned_cols=12 Identities=25% Similarity=0.628 Sum_probs=8.7
Q ss_pred CceeeEEEEcCC
Q psy6353 34 QSLGYGFVNYHR 45 (136)
Q Consensus 34 ~~kg~~fv~f~~ 45 (136)
..||||||+=.+
T Consensus 11 ~~KGfGFI~~~~ 22 (74)
T PRK09937 11 NAKGFGFICPEG 22 (74)
T ss_pred CCCCeEEEeeCC
Confidence 468999996543
No 244
>PRK13259 regulatory protein SpoVG; Reviewed
Probab=31.33 E-value=1.1e+02 Score=18.22 Aligned_cols=24 Identities=0% Similarity=-0.031 Sum_probs=18.6
Q ss_pred CeeEEEEEc--cCCCceeeEEEEcCC
Q psy6353 22 DAEICVFLI--STAQSLGYGFVNYHR 45 (136)
Q Consensus 22 ~v~~~~~~~--~~~~~kg~~fv~f~~ 45 (136)
+|+++++-. ..|+-+|+|-|+|.+
T Consensus 2 ~ITdVri~~~~~~g~lka~asit~dd 27 (94)
T PRK13259 2 EVTDVRLRKVNTEGRMKAIVSITFDN 27 (94)
T ss_pred eEEEEEEEEeCCCCcEEEEEEEEECC
Confidence 366777766 567889999999987
No 245
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=30.87 E-value=14 Score=27.80 Aligned_cols=56 Identities=20% Similarity=0.178 Sum_probs=41.8
Q ss_pred CceEEEcCCCCCCC--------HHHHHHhhcC--CCceEEEEEEeCC-CCCCccceEeecCcccccc
Q psy6353 80 GANLYVSGLPKHMS--------QQELESLFSP--YGRIITSRILCDN-LATENGKYYSGLGGRERLR 135 (136)
Q Consensus 80 ~~~l~v~nl~~~~t--------~~~l~~~f~~--~G~v~~~~i~~~~-~~~~~~~~fv~f~~~e~~~ 135 (136)
.+.+|+.+.+...+ .+++...|.+ .+.+..+..-++. +...++..|++|...+++.
T Consensus 174 qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q 240 (438)
T COG5193 174 QRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQ 240 (438)
T ss_pred hhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHH
Confidence 45677777776544 4499999998 6777888888887 5555566899999887754
No 246
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=30.81 E-value=89 Score=17.15 Aligned_cols=59 Identities=14% Similarity=0.069 Sum_probs=37.0
Q ss_pred HHHHhccCC-CeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCC
Q psy6353 13 YEKVHLGFS-DAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPS 74 (136)
Q Consensus 13 l~~~f~~~G-~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~ 74 (136)
+.+-+...| ++.++.-+. .++..--.-||+.....+...+ ++=..+.++.+++.....+
T Consensus 4 I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i---~~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 4 IKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEI---YKIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccce---eehHhhCCeEEEEecCCCC
Confidence 344555566 677776666 4566677788888765543333 3335677888888765543
No 247
>PRK15464 cold shock-like protein CspH; Provisional
Probab=30.58 E-value=26 Score=19.42 Aligned_cols=12 Identities=25% Similarity=0.398 Sum_probs=9.2
Q ss_pred CceeeEEEEcCC
Q psy6353 34 QSLGYGFVNYHR 45 (136)
Q Consensus 34 ~~kg~~fv~f~~ 45 (136)
..||||||+=.+
T Consensus 14 ~~KGfGFI~~~~ 25 (70)
T PRK15464 14 RKSGKGFIIPSD 25 (70)
T ss_pred CCCCeEEEccCC
Confidence 468999997655
No 248
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=30.55 E-value=96 Score=20.01 Aligned_cols=50 Identities=14% Similarity=0.154 Sum_probs=34.6
Q ss_pred eEEEcCCCCCCCHHHHHHhhcC-CC-ceEEEEEEeCCCCCCccceEeecCcccc
Q psy6353 82 NLYVSGLPKHMSQQELESLFSP-YG-RIITSRILCDNLATENGKYYSGLGGRER 133 (136)
Q Consensus 82 ~l~v~nl~~~~t~~~l~~~f~~-~G-~v~~~~i~~~~~~~~~~~~fv~f~~~e~ 133 (136)
+-|+-.++..++..+|++.+.. |+ .|..|+...-+. .-+-|||.+...++
T Consensus 83 N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~--g~KKA~V~L~~~~~ 134 (145)
T PTZ00191 83 NTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPD--GLKKAYIRLSPDVD 134 (145)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCC--CceEEEEEECCCCc
Confidence 4555567889999999988876 54 456676555443 23569999976654
No 249
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=30.20 E-value=1.1e+02 Score=17.28 Aligned_cols=57 Identities=5% Similarity=-0.092 Sum_probs=40.2
Q ss_pred eeecCCChhhh-HHHHhccCC-CeeEEEEEc-cCCCceeeEEEEcCCHHHHHHHHHHHcC
Q psy6353 2 VYQTLLNKLFT-YEKVHLGFS-DAEICVFLI-STAQSLGYGFVNYHRPEDAEKAINTLNG 58 (136)
Q Consensus 2 v~v~nl~~~~~-l~~~f~~~G-~v~~~~~~~-~~~~~kg~~fv~f~~~~~a~~a~~~~~~ 58 (136)
+++.|-|--.. +-.+|+.-| .|.++.+-. ....-..+-++...+.+..+...++++.
T Consensus 7 i~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~~~~~i~qi~kQL~K 66 (76)
T PRK06737 7 LVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVCTENEATLLVSQLKK 66 (76)
T ss_pred EEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEECCHHHHHHHHHHHhC
Confidence 56777777777 888999988 677776554 3323334556656888888888888865
No 250
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=30.16 E-value=35 Score=16.34 Aligned_cols=15 Identities=13% Similarity=0.379 Sum_probs=9.3
Q ss_pred CCCHHHHHHhhcCCC
Q psy6353 91 HMSQQELESLFSPYG 105 (136)
Q Consensus 91 ~~t~~~l~~~f~~~G 105 (136)
++++++|++.|.+.+
T Consensus 20 Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 20 DTDEDQLKEVFNRIK 34 (36)
T ss_dssp ---HHHHHHHHHCS-
T ss_pred cCCHHHHHHHHHHhc
Confidence 568899999987754
No 251
>PRK10943 cold shock-like protein CspC; Provisional
Probab=29.97 E-value=28 Score=19.14 Aligned_cols=12 Identities=33% Similarity=0.736 Sum_probs=9.1
Q ss_pred CceeeEEEEcCC
Q psy6353 34 QSLGYGFVNYHR 45 (136)
Q Consensus 34 ~~kg~~fv~f~~ 45 (136)
..||||||+=.+
T Consensus 13 ~~kGfGFI~~~~ 24 (69)
T PRK10943 13 ESKGFGFITPAD 24 (69)
T ss_pred CCCCcEEEecCC
Confidence 458999997654
No 252
>PRK15463 cold shock-like protein CspF; Provisional
Probab=29.81 E-value=29 Score=19.16 Aligned_cols=12 Identities=17% Similarity=0.282 Sum_probs=9.2
Q ss_pred CceeeEEEEcCC
Q psy6353 34 QSLGYGFVNYHR 45 (136)
Q Consensus 34 ~~kg~~fv~f~~ 45 (136)
..||||||+=.+
T Consensus 14 ~~kGfGFI~~~~ 25 (70)
T PRK15463 14 GKSGKGLITPSD 25 (70)
T ss_pred CCCceEEEecCC
Confidence 458999997654
No 253
>PRK09507 cspE cold shock protein CspE; Reviewed
Probab=28.98 E-value=30 Score=18.98 Aligned_cols=12 Identities=33% Similarity=0.769 Sum_probs=9.1
Q ss_pred CceeeEEEEcCC
Q psy6353 34 QSLGYGFVNYHR 45 (136)
Q Consensus 34 ~~kg~~fv~f~~ 45 (136)
..||||||+=.+
T Consensus 13 ~~kGyGFI~~~~ 24 (69)
T PRK09507 13 ESKGFGFITPED 24 (69)
T ss_pred CCCCcEEEecCC
Confidence 458999997654
No 254
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=28.92 E-value=38 Score=17.79 Aligned_cols=12 Identities=33% Similarity=0.623 Sum_probs=8.8
Q ss_pred CceeeEEEEcCC
Q psy6353 34 QSLGYGFVNYHR 45 (136)
Q Consensus 34 ~~kg~~fv~f~~ 45 (136)
.++|||||.-.+
T Consensus 6 ~~~GfGFv~~~~ 17 (58)
T PF08206_consen 6 HPKGFGFVIPDD 17 (58)
T ss_dssp -SSS-EEEEECT
T ss_pred EcCCCEEEEECC
Confidence 468999999887
No 255
>TIGR02381 cspD cold shock domain protein CspD. This model represents what appears to be a phylogenetically distinct clade, containing E. coli CspD and related proteobacterial proteins within the larger family of cold shock domain proteins described by pfam model pfam00313. The gene symbol cspD may have been used idependently for other subfamilies of cold shock domain proteins, such as for B. subtilis CspD. These proteins typically are shorter than 70 amino acids. In E. coli, CspD is a stress response protein induced in stationary phase. This homodimer binds single-stranded DNA and appears to inhibit DNA replication.
Probab=28.87 E-value=33 Score=18.73 Aligned_cols=12 Identities=25% Similarity=0.628 Sum_probs=9.5
Q ss_pred CceeeEEEEcCC
Q psy6353 34 QSLGYGFVNYHR 45 (136)
Q Consensus 34 ~~kg~~fv~f~~ 45 (136)
..||||||+=.+
T Consensus 11 ~~kGfGFI~~~~ 22 (68)
T TIGR02381 11 NAKGFGFICPEG 22 (68)
T ss_pred CCCCeEEEecCC
Confidence 468999997765
No 256
>PF12829 Mhr1: Transcriptional regulation of mitochondrial recombination; InterPro: IPR024629 These proteins are involved in regulation of RNA polymerase II-dependent transcription. They are also involved in regulation of mitochondrial DNA recombination, maintenance, repair, and generation of homoplasmic cells [, , , ].
Probab=28.30 E-value=1.1e+02 Score=17.98 Aligned_cols=21 Identities=24% Similarity=0.135 Sum_probs=18.1
Q ss_pred eeeEEEEcCCHHHHHHHHHHH
Q psy6353 36 LGYGFVNYHRPEDAEKAINTL 56 (136)
Q Consensus 36 kg~~fv~f~~~~~a~~a~~~~ 56 (136)
+.+|-|+|.+.+.+..|.+.|
T Consensus 51 ~pm~vv~f~~~~~g~~~yq~L 71 (91)
T PF12829_consen 51 RPMCVVNFPNYEVGVSAYQKL 71 (91)
T ss_pred eEeEEEECCChHHHHHHHHHH
Confidence 578999999999999887755
No 257
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=26.70 E-value=3.5e+02 Score=21.95 Aligned_cols=79 Identities=15% Similarity=0.251 Sum_probs=53.2
Q ss_pred eeEEEEcCCHHHHHHHHHHHcCceeCCceEEE--------------EeeCC-------CCCCCCCceEEEcCCCCCCCHH
Q psy6353 37 GYGFVNYHRPEDAEKAINTLNGLRLQNKTIKV--------------SYARP-------SSESIKGANLYVSGLPKHMSQQ 95 (136)
Q Consensus 37 g~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v--------------~~~~~-------~~~~~~~~~l~v~nl~~~~t~~ 95 (136)
--|++++.++..-+-..+-++...+.+-.++- +++.. .++......+|+.+|+.++.++
T Consensus 237 i~C~iT~Tn~~TH~iIr~Nl~rSpmysG~Ieg~GPRYCPSIEDKIvrF~dK~~HqIFlEPEGl~~~evY~nGlSTSlP~d 316 (621)
T COG0445 237 IPCYITYTNEKTHEIIRDNLHRSPMYSGEIEGVGPRYCPSIEDKIVRFADKERHQIFLEPEGLDTDEVYPNGLSTSLPED 316 (621)
T ss_pred cceeeecCChHHHHHHHHhhhhCchhcccccccCCCCCCCHHHhhccCCCCccceEEecCCCCCCceEecCcccccCCHH
Confidence 35899999988887777767665555433331 11110 1123567889999999998887
Q ss_pred HHHHhhcCCCceEEEEEEeC
Q psy6353 96 ELESLFSPYGRIITSRILCD 115 (136)
Q Consensus 96 ~l~~~f~~~G~v~~~~i~~~ 115 (136)
-=.++.......+++.+++.
T Consensus 317 VQ~~~irsipGlEna~i~rp 336 (621)
T COG0445 317 VQEQIIRSIPGLENAEILRP 336 (621)
T ss_pred HHHHHHHhCcccccceeecc
Confidence 66677777777888888863
No 258
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=26.24 E-value=89 Score=19.40 Aligned_cols=27 Identities=4% Similarity=-0.041 Sum_probs=20.8
Q ss_pred ecCCChhhh-HHHHhccCCCeeEEEEEc
Q psy6353 4 QTLLNKLFT-YEKVHLGFSDAEICVFLI 30 (136)
Q Consensus 4 v~nl~~~~~-l~~~f~~~G~v~~~~~~~ 30 (136)
|.-||.... |.++|+.-|+|.++-.+.
T Consensus 8 VqVlPPYTnKLSDYfeSPGKI~svItvt 35 (145)
T TIGR02542 8 VQVLPPYTNKLSDYFESPGKIQSVITVT 35 (145)
T ss_pred eEecCCccchhhHHhcCCCceEEEEEEe
Confidence 445676666 999999999999885544
No 259
>PRK09890 cold shock protein CspG; Provisional
Probab=26.05 E-value=36 Score=18.76 Aligned_cols=12 Identities=25% Similarity=0.670 Sum_probs=9.1
Q ss_pred CceeeEEEEcCC
Q psy6353 34 QSLGYGFVNYHR 45 (136)
Q Consensus 34 ~~kg~~fv~f~~ 45 (136)
..||||||+=.+
T Consensus 14 ~~kGfGFI~~~~ 25 (70)
T PRK09890 14 ADKGFGFITPDD 25 (70)
T ss_pred CCCCcEEEecCC
Confidence 458999997654
No 260
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=25.27 E-value=1e+02 Score=15.56 Aligned_cols=26 Identities=19% Similarity=0.310 Sum_probs=20.8
Q ss_pred ceEEEcCCCCCCCHHHHHHhhcCCCc
Q psy6353 81 ANLYVSGLPKHMSQQELESLFSPYGR 106 (136)
Q Consensus 81 ~~l~v~nl~~~~t~~~l~~~f~~~G~ 106 (136)
..+++.+.....+.++|.++...+|.
T Consensus 2 ~~~~i~g~~~~~~~~~l~~~i~~~Gg 27 (72)
T cd00027 2 LTFVITGDLPSEERDELKELIEKLGG 27 (72)
T ss_pred CEEEEEecCCCcCHHHHHHHHHHcCC
Confidence 35677777667899999999999886
No 261
>KOG0156|consensus
Probab=24.97 E-value=1.8e+02 Score=22.76 Aligned_cols=46 Identities=11% Similarity=0.084 Sum_probs=35.9
Q ss_pred HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceE
Q psy6353 13 YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTI 66 (136)
Q Consensus 13 l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l 66 (136)
+.++-++||++-.+++-. .-.|--.+.+.|+.|+.+ |+..+.+|+.
T Consensus 52 ~~~ls~~yGpi~tl~lG~-------~~~Vviss~~~akE~l~~-~d~~fa~Rp~ 97 (489)
T KOG0156|consen 52 FRKLSKKYGPVFTLRLGS-------VPVVVISSYEAAKEVLVK-QDLEFADRPD 97 (489)
T ss_pred HHHHHHHhCCeEEEEecC-------ceEEEECCHHHHHHHHHh-CCccccCCCC
Confidence 677778999998776632 135777889999999984 7888989885
No 262
>PRK10354 RNA chaperone/anti-terminator; Provisional
Probab=24.66 E-value=39 Score=18.56 Aligned_cols=12 Identities=25% Similarity=0.670 Sum_probs=8.8
Q ss_pred CceeeEEEEcCC
Q psy6353 34 QSLGYGFVNYHR 45 (136)
Q Consensus 34 ~~kg~~fv~f~~ 45 (136)
..+|||||+=.+
T Consensus 14 ~~kGfGFI~~~~ 25 (70)
T PRK10354 14 ADKGFGFITPDD 25 (70)
T ss_pred CCCCcEEEecCC
Confidence 358999997543
No 263
>KOG1295|consensus
Probab=24.23 E-value=72 Score=23.95 Aligned_cols=55 Identities=15% Similarity=0.311 Sum_probs=34.8
Q ss_pred CceEEEcCCCCCCCHHHHHHhhcCCCceEE-EEEE-eCC--CCCCccceEeecCccccc
Q psy6353 80 GANLYVSGLPKHMSQQELESLFSPYGRIIT-SRIL-CDN--LATENGKYYSGLGGRERL 134 (136)
Q Consensus 80 ~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~-~~i~-~~~--~~~~~~~~fv~f~~~e~~ 134 (136)
..++.|..||+..+++++.+...++..=.. .... .+. .+..-.-+|+.|...+++
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv 65 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDV 65 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHH
Confidence 356889999999999999999988743221 1222 111 111113378888877653
No 264
>KOG1888|consensus
Probab=24.09 E-value=1.8e+02 Score=24.38 Aligned_cols=55 Identities=15% Similarity=0.270 Sum_probs=37.7
Q ss_pred EEEEeeCCCCCCCCCceEEEcCCCC--CCCHHHHHHhhcCCC-ceEEEEEEeCCCCCC
Q psy6353 66 IKVSYARPSSESIKGANLYVSGLPK--HMSQQELESLFSPYG-RIITSRILCDNLATE 120 (136)
Q Consensus 66 l~v~~~~~~~~~~~~~~l~v~nl~~--~~t~~~l~~~f~~~G-~v~~~~i~~~~~~~~ 120 (136)
|.+.|++..+......-|++.+-+| ..+.....++++.|| +|+-+++++....++
T Consensus 295 IPl~WsQd~S~~~~KP~I~l~~~DP~y~~a~lHF~~L~~RYG~PIiilNLIKt~ekr~ 352 (868)
T KOG1888|consen 295 IPLFWSQDASRMVPKPDIVLDKRDPFYETAALHFDNLVQRYGNPIIILNLIKTNEKRP 352 (868)
T ss_pred ccceeccchhhcCCCCCeEEeccCCccchHHHHHHHHHHhcCCcEEEEEeeccccCCc
Confidence 3445555444445667789888877 457778889999998 456678887664443
No 265
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=23.60 E-value=1.1e+02 Score=17.01 Aligned_cols=57 Identities=12% Similarity=0.059 Sum_probs=35.5
Q ss_pred HHHHhccCC-CeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeC
Q psy6353 13 YEKVHLGFS-DAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR 72 (136)
Q Consensus 13 l~~~f~~~G-~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~ 72 (136)
+++-|...| ++..+..+. .++.+.-.-+|+.....+... -++=..++|+++.|....
T Consensus 4 I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 4 IEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCc
Confidence 456667777 777777776 445566677777765433222 233356778888887543
No 266
>KOG2318|consensus
Probab=23.58 E-value=1.1e+02 Score=24.49 Aligned_cols=27 Identities=19% Similarity=0.396 Sum_probs=24.7
Q ss_pred eEEEEcCCHHHHHHHHHHHcCceeCCc
Q psy6353 38 YGFVNYHRPEDAEKAINTLNGLRLQNK 64 (136)
Q Consensus 38 ~~fv~f~~~~~a~~a~~~~~~~~~~g~ 64 (136)
||.|+|.+...|.+....++|..+...
T Consensus 270 yAVvecDsi~tA~~vYe~CDG~EfEsS 296 (650)
T KOG2318|consen 270 YAVVECDSIETAKAVYEECDGIEFESS 296 (650)
T ss_pred EEEEEecCchHHHHHHHhcCcceeccc
Confidence 899999999999999999999988754
No 267
>KOG4574|consensus
Probab=23.00 E-value=23 Score=29.47 Aligned_cols=47 Identities=17% Similarity=0.198 Sum_probs=35.1
Q ss_pred EEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCccccc
Q psy6353 83 LYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERL 134 (136)
Q Consensus 83 l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~ 134 (136)
.++.|.+-+.+...|..+|..||.|.+..-.++.+. +-|+|.+.|.+
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N~-----alvs~~s~~sa 347 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLNM-----ALVSFSSVESA 347 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheecccccc-----hhhhhHHHHHH
Confidence 444555667788899999999999999988887643 34777766653
No 268
>PF10915 DUF2709: Protein of unknown function (DUF2709); InterPro: IPR024484 Members of this family appear restricted to Chlamydiales. Their function is unknown.
Probab=22.77 E-value=2.6e+02 Score=19.12 Aligned_cols=63 Identities=17% Similarity=0.342 Sum_probs=43.3
Q ss_pred EEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCCCCCCceEEE---------cCCCCCCCHHHHHHhhcCCCc
Q psy6353 41 VNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYV---------SGLPKHMSQQELESLFSPYGR 106 (136)
Q Consensus 41 v~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~~~~~~~l~v---------~nl~~~~t~~~l~~~f~~~G~ 106 (136)
+-|.+.++|-+.+++ .|...+.-.|++....|.-+. ...++|| .|..++ .++.|.+-.++|.+
T Consensus 47 ~I~qs~e~ai~~lE~-e~KlWreteI~I~~g~p~VNE-~TkkIYICPFTGKVF~DNt~~n-PQDAIYDWvSkCPe 118 (238)
T PF10915_consen 47 IIFQSAEDAIRILEE-EGKLWRETEIKIQSGKPSVNE-QTKKIYICPFTGKVFGDNTHPN-PQDAIYDWVSKCPE 118 (238)
T ss_pred hhccCHHHHHHHHHH-hcchheeeeEEEecCCccccc-ccceEEEcCCcCccccCCCCCC-hHHHHHHHHhhCCc
Confidence 568888888888774 577777788888887776543 4455666 333333 56678888888753
No 269
>KOG0643|consensus
Probab=22.25 E-value=97 Score=22.43 Aligned_cols=36 Identities=19% Similarity=0.245 Sum_probs=27.9
Q ss_pred CHHHHHHhhcCCCceEEEEEEeCCCCCCccc--eEeec
Q psy6353 93 SQQELESLFSPYGRIITSRILCDNLATENGK--YYSGL 128 (136)
Q Consensus 93 t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~--~fv~f 128 (136)
.++++...=..||+|.++.+-++-..-.+|+ +||+.
T Consensus 276 ~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~ 313 (327)
T KOG0643|consen 276 FEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRL 313 (327)
T ss_pred HHHHhccccccccCcceeEECCCCcccccCCCCceEEE
Confidence 5667777777899999999998876666666 78864
No 270
>PF05573 NosL: NosL; InterPro: IPR008719 NosL is one of the accessory proteins of the nos (nitrous oxide reductase) gene cluster. NosL is a monomeric protein of 18,540 MW that specifically and stoichiometrically binds Cu(I). The copper ion in NosL is ligated by a Cys residue, and one Met and one His are thought to serve as the other ligands. It is possible that NosL is a copper chaperone involved in metallocentre assembly []. This entry also contains HTH-type transcriptional repressors, including YcnK. YcnK may act as a negative transcriptional regulator of YcnJ in the presence of copper and may use copper as a corepressor. The gene, ycnK, is significantly induced under copper-limiting conditions.; PDB: 2HQ3_A 2HPU_A.
Probab=22.18 E-value=92 Score=19.88 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=17.0
Q ss_pred ceeeEEEEcCCHHHHHHHHHHHcC
Q psy6353 35 SLGYGFVNYHRPEDAEKAINTLNG 58 (136)
Q Consensus 35 ~kg~~fv~f~~~~~a~~a~~~~~~ 58 (136)
+-|...+.|.+.++|++...+..|
T Consensus 113 pMg~~~~aF~~~~~A~~F~~~~GG 136 (149)
T PF05573_consen 113 PMGPDLIAFASKEDAEAFAKEHGG 136 (149)
T ss_dssp TTS--EEEES-HHHHHHHHHHTEE
T ss_pred CCCCcccccCCHHHHHHHHHHcCC
Confidence 456889999999999999887533
No 271
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=22.14 E-value=70 Score=18.23 Aligned_cols=28 Identities=21% Similarity=0.267 Sum_probs=21.9
Q ss_pred cCCCCCCCHHHHHHhhcCCCceEEEEEEe
Q psy6353 86 SGLPKHMSQQELESLFSPYGRIITSRILC 114 (136)
Q Consensus 86 ~nl~~~~t~~~l~~~f~~~G~v~~~~i~~ 114 (136)
-.||..++.+.+..-|++-| |..+.+++
T Consensus 56 ~~LP~~vd~~~i~A~~~~dG-vL~I~lPk 83 (84)
T cd06498 56 YRIPADVDPLTITSSLSPDG-VLTVCGPR 83 (84)
T ss_pred EECCCCCChHHcEEEeCCCC-EEEEEEeC
Confidence 34899999999999997667 66676664
No 272
>KOG3465|consensus
Probab=22.04 E-value=1.2e+02 Score=17.45 Aligned_cols=30 Identities=27% Similarity=0.340 Sum_probs=22.0
Q ss_pred CeeecCCChhhh-HHHHhccCCCeeEEEEEc
Q psy6353 1 MVYQTLLNKLFT-YEKVHLGFSDAEICVFLI 30 (136)
Q Consensus 1 ~v~v~nl~~~~~-l~~~f~~~G~v~~~~~~~ 30 (136)
|||+.++++.++ -+.++.-...-..+.+..
T Consensus 1 Mvy~qtwdEF~~ase~L~~A~P~~~RlvmKY 31 (86)
T KOG3465|consen 1 MVYLQTWDEFFTASESLYLANPEKTRLVMKY 31 (86)
T ss_pred CceeeeHHHHHHHHHHHHhcCccceEEEEEE
Confidence 899999988888 777777777655544433
No 273
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=21.51 E-value=70 Score=15.12 Aligned_cols=17 Identities=24% Similarity=0.262 Sum_probs=14.0
Q ss_pred CCCHHHHHHhhcCCCce
Q psy6353 91 HMSQQELESLFSPYGRI 107 (136)
Q Consensus 91 ~~t~~~l~~~f~~~G~v 107 (136)
.++.++|++.+..+|.+
T Consensus 3 tWs~~~L~~wL~~~gi~ 19 (38)
T PF10281_consen 3 TWSDSDLKSWLKSHGIP 19 (38)
T ss_pred CCCHHHHHHHHHHcCCC
Confidence 57889999999988854
No 274
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=21.45 E-value=1.7e+02 Score=20.90 Aligned_cols=37 Identities=19% Similarity=0.133 Sum_probs=27.8
Q ss_pred CceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCC
Q psy6353 80 GANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116 (136)
Q Consensus 80 ~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~ 116 (136)
.....|+|||.++|..-+..++..--.+....++...
T Consensus 95 ~~~~vVaNlPY~Isspii~kll~~~~~~~~~v~M~Qk 131 (259)
T COG0030 95 QPYKVVANLPYNISSPILFKLLEEKFIIQDMVLMVQK 131 (259)
T ss_pred CCCEEEEcCCCcccHHHHHHHHhccCccceEEEEeHH
Confidence 4567899999999999999988876555455555443
No 275
>COG1278 CspC Cold shock proteins [Transcription]
Probab=21.42 E-value=39 Score=18.69 Aligned_cols=38 Identities=21% Similarity=0.399 Sum_probs=20.6
Q ss_pred CceeeEEEEcCCH-HHHHH---HHHHHcC-cee-CCceEEEEeeC
Q psy6353 34 QSLGYGFVNYHRP-EDAEK---AINTLNG-LRL-QNKTIKVSYAR 72 (136)
Q Consensus 34 ~~kg~~fv~f~~~-~~a~~---a~~~~~~-~~~-~g~~l~v~~~~ 72 (136)
..||||||+=.+- .++-. |++ .+| .+| .|+++......
T Consensus 11 ~~KGfGFI~p~~G~~DvFVH~Sai~-~~g~~~L~eGQ~V~f~~~~ 54 (67)
T COG1278 11 ATKGFGFITPEDGGKDVFVHISAIQ-RAGFRTLREGQKVEFEVEQ 54 (67)
T ss_pred CCCcceEcCCCCCCcCEEEEeeeec-cCCCcccCCCCEEEEEEec
Confidence 5689999877664 23222 333 234 333 47776665444
No 276
>PF13689 DUF4154: Domain of unknown function (DUF4154)
Probab=21.24 E-value=2.2e+02 Score=17.82 Aligned_cols=50 Identities=20% Similarity=0.220 Sum_probs=32.6
Q ss_pred EEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCCCCCCceEEEcCCC
Q psy6353 39 GFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLP 89 (136)
Q Consensus 39 ~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~~~~~~~l~v~nl~ 89 (136)
-+..+.+.. ...++..+.+..+.|+++.+..-....+...-.-|||..-.
T Consensus 29 ~icv~g~~~-~~~~L~~l~~~~~~~~~i~v~~~~~~~~~~~C~ilyi~~~~ 78 (145)
T PF13689_consen 29 RICVLGDDP-FAEALSTLAGKQVGGRPIRVRRLSSPNEISGCHILYISSSE 78 (145)
T ss_pred EEEEECChH-HHHHHHHhhhcccCCCcEEEEECCCCcccccccEEEECCCC
Confidence 334444444 44567788889999999999866544333455668887544
No 277
>PF15407 Spo7_2_N: Sporulation protein family 7
Probab=20.97 E-value=9 Score=21.16 Aligned_cols=28 Identities=18% Similarity=0.351 Sum_probs=18.5
Q ss_pred eCCCCCCCCCceEEEcCCCCCCCHHHHH
Q psy6353 71 ARPSSESIKGANLYVSGLPKHMSQQELE 98 (136)
Q Consensus 71 ~~~~~~~~~~~~l~v~nl~~~~t~~~l~ 98 (136)
+.|..-...+++++++.+|..+-++.=.
T Consensus 18 ~Sp~~Ls~tSr~vflG~IP~~W~~~~~~ 45 (67)
T PF15407_consen 18 ASPEELSLTSRRVFLGPIPEIWLQDHRK 45 (67)
T ss_pred CCHHHHHHcCceEEECCCChHHHHcCcc
Confidence 3333334567899999999987555433
No 278
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=20.66 E-value=3.4e+02 Score=19.61 Aligned_cols=35 Identities=11% Similarity=0.171 Sum_probs=25.1
Q ss_pred ceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeC
Q psy6353 81 ANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115 (136)
Q Consensus 81 ~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~ 115 (136)
..+.|.|+|.+++...+..++..-..+....++..
T Consensus 102 ~d~VvaNlPY~Istpil~~ll~~~~~~~~~vlm~Q 136 (294)
T PTZ00338 102 FDVCVANVPYQISSPLVFKLLAHRPLFRCAVLMFQ 136 (294)
T ss_pred cCEEEecCCcccCcHHHHHHHhcCCCCceeeeeeh
Confidence 35788999999999999888865444555444443
No 279
>PF12091 DUF3567: Protein of unknown function (DUF3567); InterPro: IPR021951 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 90 amino acids in length. This protein has a conserved EIVDK sequence motif.
Probab=20.61 E-value=76 Score=18.43 Aligned_cols=57 Identities=18% Similarity=0.390 Sum_probs=32.5
Q ss_pred CceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCCCCCCceEEEcCC-------------CCCCCHHHHHHh
Q psy6353 34 QSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGL-------------PKHMSQQELESL 100 (136)
Q Consensus 34 ~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~~~~~~~l~v~nl-------------~~~~t~~~l~~~ 100 (136)
.|-.||-|+|.-.... .++. .+|.+|-.+. ..+.|||.+. ....|.+++.++
T Consensus 6 nSd~y~VV~~~~~~~~-~~l~-~gGyEIVDK~-------------~~rEifi~G~~Ae~Fr~~V~~li~~~Pt~EevDdf 70 (85)
T PF12091_consen 6 NSDNYCVVEFPPDAGH-PALA-RGGYEIVDKN-------------ARREIFIDGSWAEMFREDVQALIASEPTQEEVDDF 70 (85)
T ss_pred cCCceEEEEecCCCCc-cchh-cCCcEEeecC-------------CCceEEeCcHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 3556888998432221 2333 3455543322 3355777653 345688888888
Q ss_pred hcCCC
Q psy6353 101 FSPYG 105 (136)
Q Consensus 101 f~~~G 105 (136)
+.+|.
T Consensus 71 L~~y~ 75 (85)
T PF12091_consen 71 LGGYD 75 (85)
T ss_pred HHHHH
Confidence 87774
No 280
>KOG4365|consensus
Probab=20.60 E-value=68 Score=24.78 Aligned_cols=49 Identities=2% Similarity=-0.246 Sum_probs=37.2
Q ss_pred eEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccc-eEeecCc
Q psy6353 82 NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGK-YYSGLGG 130 (136)
Q Consensus 82 ~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~-~fv~f~~ 130 (136)
+-++..+|...++.++.-+|+.||.|..+.+-+.-+.+.... +|+.-..
T Consensus 5 ~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~ 54 (572)
T KOG4365|consen 5 KKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK 54 (572)
T ss_pred hhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec
Confidence 446677888999999999999999998887777665555433 6766543
No 281
>cd04458 CSP_CDS Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. CSP expression is up-regulated by an abrupt drop in growth temperature. CSP's are also expressed under normal condition at lower level. The function of cold-shock proteins is not fully understood. They preferentially bind poly-pyrimidine region of single-stranded RNA and DNA. CSP's are thought to bind mRNA and regulate ribosomal translation, mRNA degradation, and the rate of transcription termination. The human Y-box protein, which contains a CSD, regulates transcription and translation of genes that contain the Y-box sequence in their promoters. This specific ssDNA-binding properties of CSD are required for the binding of Y-box protein to the promoter's Y-box sequence, thereby regulating transcription.
Probab=20.39 E-value=60 Score=17.17 Aligned_cols=11 Identities=27% Similarity=0.727 Sum_probs=9.0
Q ss_pred ceeeEEEEcCC
Q psy6353 35 SLGYGFVNYHR 45 (136)
Q Consensus 35 ~kg~~fv~f~~ 45 (136)
.+|||||.=.+
T Consensus 11 ~kGfGFI~~~~ 21 (65)
T cd04458 11 EKGFGFITPDD 21 (65)
T ss_pred CCCeEEEecCC
Confidence 47999998776
No 282
>PF10141 ssDNA-exonuc_C: Single-strand DNA-specific exonuclease, C terminal domain; InterPro: IPR018779 This entry represents a domain found at the C terminus of a set of single-stranded DNA-specific exonucleases, including RecJ. Its function has not, as yet, been determined.
Probab=20.34 E-value=2.2e+02 Score=19.04 Aligned_cols=51 Identities=22% Similarity=0.307 Sum_probs=37.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCccccc
Q psy6353 78 IKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERL 134 (136)
Q Consensus 78 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~ 134 (136)
.....|.+-.+|.+ .++|..++ +.+.+..+.+...... ..++..++++|.-
T Consensus 50 ~~~~~lVl~D~P~~--~~~l~~~l-~~~~~~~Iyl~f~~~~---~~y~~~~P~Re~F 100 (195)
T PF10141_consen 50 ESYDNLVLLDLPPS--LEQLKELL-QQQQPERIYLLFYQQD---SAYFEGMPTREQF 100 (195)
T ss_pred ccCCEEEEEeCCCC--HHHHHHHH-HhCCcceEEEEECCcc---chhhcCCCCHHHH
Confidence 45677888888886 88899999 5777888888875322 3457778887753
No 283
>PF06014 DUF910: Bacterial protein of unknown function (DUF910); InterPro: IPR009256 This family consists of several short bacterial proteins of unknown function.; PDB: 2NN4_A.
Probab=20.20 E-value=75 Score=17.28 Aligned_cols=18 Identities=22% Similarity=0.455 Sum_probs=10.7
Q ss_pred CHHHHHHhhcCCCceEEE
Q psy6353 93 SQQELESLFSPYGRIITS 110 (136)
Q Consensus 93 t~~~l~~~f~~~G~v~~~ 110 (136)
|--|+.+++.+||.++.+
T Consensus 3 tlyDVqQLLK~fG~~IY~ 20 (62)
T PF06014_consen 3 TLYDVQQLLKKFGIIIYV 20 (62)
T ss_dssp SHHHHHHHHHTTS-----
T ss_pred cHHHHHHHHHHCCEEEEe
Confidence 345889999999987654
No 284
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=20.10 E-value=1.1e+02 Score=15.13 Aligned_cols=20 Identities=20% Similarity=0.529 Sum_probs=15.3
Q ss_pred EcCCCCCCCHHHHHHhhcCC
Q psy6353 85 VSGLPKHMSQQELESLFSPY 104 (136)
Q Consensus 85 v~nl~~~~t~~~l~~~f~~~ 104 (136)
|-+++..++.++|+..|..-
T Consensus 5 vLgl~~~~~~~~ik~~y~~l 24 (55)
T cd06257 5 ILGVPPDASDEEIKKAYRKL 24 (55)
T ss_pred HcCCCCCCCHHHHHHHHHHH
Confidence 34678889999998887643
Done!