Query psy6353
Match_columns 136
No_of_seqs 134 out of 1169
Neff 10.0
Searched_HMMs 29240
Date Sat Aug 17 00:15:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6353.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6353hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b7f_A Protein (SXL-lethal pro 100.0 6.4E-34 2.2E-38 184.5 14.4 134 2-135 6-145 (168)
2 1fxl_A Paraneoplastic encephal 100.0 8E-34 2.7E-38 183.7 14.8 134 2-135 5-144 (167)
3 3md3_A Nuclear and cytoplasmic 100.0 5.6E-33 1.9E-37 179.5 14.6 134 2-135 3-143 (166)
4 1l3k_A Heterogeneous nuclear r 100.0 2E-32 6.7E-37 181.6 14.6 133 2-135 16-160 (196)
5 4f02_A Polyadenylate-binding p 100.0 7.3E-33 2.5E-37 186.5 12.5 133 2-135 18-157 (213)
6 3nmr_A Cugbp ELAV-like family 100.0 5.7E-32 2E-36 176.2 12.9 134 2-135 6-150 (175)
7 2qfj_A FBP-interacting repress 100.0 5.8E-32 2E-36 181.7 12.9 134 2-135 31-181 (216)
8 2cjk_A Nuclear polyadenylated 100.0 4.8E-33 1.6E-37 180.3 6.1 132 2-135 6-143 (167)
9 3tyt_A Heterogeneous nuclear r 100.0 1.1E-31 3.7E-36 180.0 11.1 130 2-135 7-179 (205)
10 2g4b_A Splicing factor U2AF 65 100.0 1.1E-30 3.8E-35 169.9 12.9 129 2-135 7-150 (172)
11 3smz_A Protein raver-1, ribonu 100.0 5.5E-30 1.9E-34 178.7 14.1 134 2-135 98-240 (284)
12 3sde_A Paraspeckle component 1 100.0 1.3E-29 4.3E-34 175.4 12.8 124 2-135 25-151 (261)
13 2ghp_A U4/U6 snRNA-associated 100.0 5.6E-30 1.9E-34 179.3 10.3 134 2-135 120-268 (292)
14 3pgw_A U1-A; protein-RNA compl 100.0 6.8E-29 2.3E-33 173.1 14.5 129 2-135 12-258 (282)
15 2yh0_A Splicing factor U2AF 65 100.0 7.3E-29 2.5E-33 164.6 12.5 129 2-135 7-170 (198)
16 3smz_A Protein raver-1, ribonu 100.0 2.6E-28 8.9E-33 170.3 13.4 123 2-135 25-151 (284)
17 1fje_B Nucleolin RBD12, protei 100.0 1.1E-29 3.8E-34 165.8 5.8 129 2-135 16-150 (175)
18 2adc_A Polypyrimidine tract-bi 100.0 4.4E-28 1.5E-32 164.7 12.2 127 2-135 37-203 (229)
19 1qm9_A Polypyrimidine tract-bi 100.0 2.3E-28 7.9E-33 162.5 9.8 127 2-135 6-172 (198)
20 2ghp_A U4/U6 snRNA-associated 100.0 3E-28 1E-32 170.5 10.5 125 2-135 44-173 (292)
21 4f25_A Polyadenylate-binding p 99.9 1.8E-25 6.3E-30 137.1 9.2 95 2-96 8-113 (115)
22 4fxv_A ELAV-like protein 1; RN 99.9 9.2E-23 3.1E-27 121.9 9.4 73 2-74 22-99 (99)
23 3s8s_A Histone-lysine N-methyl 99.8 1.1E-20 3.7E-25 114.9 9.8 73 2-74 9-86 (110)
24 3md1_A Nuclear and cytoplasmic 99.8 1.9E-20 6.4E-25 108.1 10.2 74 2-75 4-82 (83)
25 2kn4_A Immunoglobulin G-bindin 99.8 6.4E-21 2.2E-25 122.6 8.5 110 26-135 3-126 (158)
26 2lxi_A RNA-binding protein 10; 99.8 1.6E-21 5.5E-26 114.8 4.7 76 2-77 4-86 (91)
27 3lqv_A PRE-mRNA branch site pr 99.8 1.5E-21 5.1E-26 119.5 4.1 96 2-106 11-109 (115)
28 3bs9_A Nucleolysin TIA-1 isofo 99.8 3.3E-20 1.1E-24 108.0 9.3 73 2-74 9-86 (87)
29 3p5t_L Cleavage and polyadenyl 99.8 6.9E-21 2.4E-25 111.8 5.7 75 2-76 4-85 (90)
30 2lkz_A RNA-binding protein 5; 99.8 1.3E-20 4.5E-25 111.6 6.5 72 2-73 12-94 (95)
31 2do4_A Squamous cell carcinoma 99.8 1E-19 3.5E-24 108.6 10.3 75 2-76 20-98 (100)
32 3ns6_A Eukaryotic translation 99.8 1.3E-20 4.5E-25 112.7 6.3 73 2-74 9-93 (100)
33 2cq0_A Eukaryotic translation 99.8 1.2E-19 4.1E-24 108.9 9.8 76 2-77 18-98 (103)
34 2dnz_A Probable RNA-binding pr 99.8 1.6E-19 5.4E-24 106.8 9.9 76 2-77 8-88 (95)
35 1whw_A Hypothetical protein ri 99.8 1.4E-19 4.7E-24 107.9 9.3 75 2-76 11-90 (99)
36 2x1f_A MRNA 3'-END-processing 99.8 1.1E-19 3.8E-24 107.8 8.8 75 2-76 5-84 (96)
37 2hvz_A Splicing factor, argini 99.8 3.4E-20 1.1E-24 110.9 6.1 85 2-89 3-100 (101)
38 2jrs_A RNA-binding protein 39; 99.8 1.1E-19 3.9E-24 110.0 8.4 74 2-75 29-107 (108)
39 2wbr_A GW182, gawky, LD47780P; 99.8 7.8E-20 2.7E-24 105.6 7.2 66 2-71 10-78 (89)
40 2cpz_A CUG triplet repeat RNA- 99.8 2.2E-19 7.4E-24 109.8 9.5 76 2-77 28-108 (115)
41 3mdf_A Peptidyl-prolyl CIS-tra 99.8 1E-19 3.5E-24 105.4 7.6 71 2-72 10-85 (85)
42 2i2y_A Fusion protein consists 99.8 4.8E-20 1.6E-24 117.7 6.7 100 31-135 8-124 (150)
43 2dgv_A HnRNP M, heterogeneous 99.8 1.8E-19 6.3E-24 105.9 8.7 75 2-76 11-88 (92)
44 1p27_B RNA-binding protein 8A; 99.8 1.4E-19 4.9E-24 109.0 8.4 74 2-75 26-104 (106)
45 2dnh_A Bruno-like 5, RNA bindi 99.8 3.4E-19 1.2E-23 107.2 9.9 76 2-77 18-100 (105)
46 2cqb_A Peptidyl-prolyl CIS-tra 99.8 1.4E-19 4.9E-24 108.3 8.2 76 2-77 15-95 (102)
47 2dgs_A DAZ-associated protein 99.8 2.9E-19 9.9E-24 106.5 9.5 75 2-77 13-92 (99)
48 2dgo_A Cytotoxic granule-assoc 99.8 3.9E-19 1.3E-23 108.6 10.2 75 2-76 18-97 (115)
49 2cpf_A RNA binding motif prote 99.8 2.4E-19 8.2E-24 106.6 8.9 76 2-77 8-91 (98)
50 2fy1_A RNA-binding motif prote 99.8 2.4E-19 8.3E-24 109.9 9.1 75 2-76 10-88 (116)
51 1x5t_A Splicing factor 3B subu 99.8 1.4E-19 4.9E-24 107.2 7.8 75 2-76 8-88 (96)
52 2cqc_A Arginine/serine-rich sp 99.8 3.3E-19 1.1E-23 105.4 9.3 72 2-73 18-94 (95)
53 2d9p_A Polyadenylate-binding p 99.8 4.2E-19 1.4E-23 106.5 9.8 76 2-77 18-96 (103)
54 1x5u_A Splicing factor 3B subu 99.8 2.1E-19 7E-24 108.2 8.2 76 2-77 18-98 (105)
55 1x5s_A Cold-inducible RNA-bind 99.8 1.7E-19 5.8E-24 108.0 7.6 76 2-77 15-95 (102)
56 2e5h_A Zinc finger CCHC-type a 99.8 3.6E-19 1.2E-23 105.0 8.7 71 2-72 19-94 (94)
57 2dnm_A SRP46 splicing factor; 99.8 1.9E-19 6.6E-24 108.0 7.6 75 2-76 16-95 (103)
58 3ucg_A Polyadenylate-binding p 99.8 3.2E-19 1.1E-23 104.2 8.3 73 2-75 9-86 (89)
59 2ywk_A Putative RNA-binding pr 99.8 3.5E-19 1.2E-23 105.3 8.5 72 2-73 19-94 (95)
60 2cqi_A Nucleolysin TIAR; RNA r 99.8 5.9E-19 2E-23 105.8 9.6 76 2-77 18-96 (103)
61 1oo0_B CG8781-PA, drosophila Y 99.8 2.5E-19 8.5E-24 108.7 7.9 74 2-75 29-107 (110)
62 2cq3_A RNA-binding protein 9; 99.8 1.1E-18 3.8E-23 104.6 10.5 75 2-76 18-95 (103)
63 2la6_A RNA-binding protein FUS 99.8 4.4E-19 1.5E-23 105.7 8.7 71 2-72 16-99 (99)
64 3ulh_A THO complex subunit 4; 99.8 6.5E-19 2.2E-23 106.3 9.5 71 2-72 32-106 (107)
65 1x4h_A RNA-binding protein 28; 99.8 5.8E-19 2E-23 107.1 9.4 76 2-77 18-104 (111)
66 1p1t_A Cleavage stimulation fa 99.8 3.1E-19 1.1E-23 107.2 8.0 74 2-75 11-89 (104)
67 4a8x_A RNA-binding protein wit 99.8 2.9E-19 1E-23 104.1 7.5 74 2-75 7-86 (88)
68 2cph_A RNA binding motif prote 99.8 5.9E-19 2E-23 106.4 9.0 76 2-77 18-100 (107)
69 1s79_A Lupus LA protein; RRM, 99.8 2.3E-19 7.9E-24 107.8 6.9 71 2-73 14-88 (103)
70 2dgx_A KIAA0430 protein; RRM d 99.8 5.9E-19 2E-23 104.7 8.6 73 2-76 12-92 (96)
71 2div_A TRNA selenocysteine ass 99.8 4.1E-19 1.4E-23 105.7 7.8 74 2-75 12-95 (99)
72 2do0_A HnRNP M, heterogeneous 99.8 2E-18 7E-23 105.2 10.8 74 2-75 18-95 (114)
73 2kxn_B Transformer-2 protein h 99.8 4.8E-19 1.7E-23 110.4 8.1 74 2-75 49-127 (129)
74 2dng_A Eukaryotic translation 99.8 1.4E-18 4.8E-23 104.2 9.8 74 2-77 18-96 (103)
75 2nlw_A Eukaryotic translation 99.8 2.6E-19 8.9E-24 107.9 6.5 73 2-74 18-100 (105)
76 3n9u_C Cleavage and polyadenyl 99.8 4.7E-19 1.6E-23 113.8 8.1 73 2-74 58-137 (156)
77 2dgw_A Probable RNA-binding pr 99.8 1.4E-18 4.8E-23 101.9 9.2 73 2-76 13-89 (91)
78 2dgp_A Bruno-like 4, RNA bindi 99.8 4.7E-19 1.6E-23 106.8 7.3 76 2-77 16-99 (106)
79 2err_A Ataxin-2-binding protei 99.8 5.9E-19 2E-23 107.0 7.6 73 2-74 32-107 (109)
80 2cpi_A CCR4-NOT transcription 99.8 9.8E-19 3.3E-23 106.3 8.6 76 1-76 17-103 (111)
81 2mss_A Protein (musashi1); RNA 99.8 1.8E-19 6E-24 102.2 5.0 69 2-71 2-75 (75)
82 2cpe_A RNA-binding protein EWS 99.8 8.9E-19 3E-23 106.7 8.4 76 2-77 18-106 (113)
83 1wi8_A EIF-4B, eukaryotic tran 99.8 1.2E-18 4.2E-23 104.6 8.8 74 2-77 18-97 (104)
84 2krb_A Eukaryotic translation 99.8 1.4E-19 4.9E-24 104.1 4.2 67 2-68 4-80 (81)
85 2dhg_A TRNA selenocysteine ass 99.8 6.9E-19 2.3E-23 105.7 7.4 75 2-76 12-92 (104)
86 1u6f_A Tcubp1, RNA-binding pro 99.8 1.3E-18 4.4E-23 109.6 9.0 75 2-76 45-124 (139)
87 2cqp_A RNA-binding protein 12; 99.8 5.4E-19 1.8E-23 105.1 6.8 73 2-74 18-95 (98)
88 3ex7_B RNA-binding protein 8A; 99.8 7.9E-19 2.7E-23 108.9 7.6 75 2-76 25-104 (126)
89 3s7r_A Heterogeneous nuclear r 99.8 1.9E-18 6.4E-23 100.6 8.7 69 2-71 14-87 (87)
90 2dh8_A DAZ-associated protein 99.8 7.8E-19 2.7E-23 105.6 7.2 75 2-77 19-98 (105)
91 3r27_A HnRNP L, heterogeneous 99.8 1.1E-18 3.8E-23 103.8 7.7 69 2-74 24-97 (100)
92 2j76_E EIF-4B, EIF4B, eukaryot 99.8 5.3E-19 1.8E-23 105.6 6.3 72 2-75 22-99 (100)
93 2ek1_A RNA-binding protein 12; 99.8 6.1E-19 2.1E-23 104.2 6.5 72 2-73 18-94 (95)
94 1x4b_A Heterogeneous nuclear r 99.8 2E-18 6.7E-23 105.7 8.9 75 2-77 30-109 (116)
95 2jwn_A Embryonic polyadenylate 99.8 2E-18 6.7E-23 106.8 9.0 74 2-76 39-117 (124)
96 1sjq_A Polypyrimidine tract-bi 99.8 8.1E-19 2.8E-23 105.3 6.8 72 2-77 19-95 (105)
97 1h2v_Z 20 kDa nuclear CAP bind 99.8 2.6E-18 8.9E-23 110.2 9.7 75 2-76 42-121 (156)
98 1x4a_A Splicing factor, argini 99.8 3.1E-18 1E-22 103.7 9.4 74 2-76 25-101 (109)
99 2kt5_A RNA and export factor-b 99.8 3.6E-18 1.2E-22 105.7 9.8 75 2-76 38-116 (124)
100 2kn4_A Immunoglobulin G-bindin 99.8 1.2E-18 4.2E-23 111.9 8.0 75 2-76 73-152 (158)
101 1x5o_A RNA binding motif, sing 99.8 2.6E-18 9E-23 104.7 9.0 73 2-74 28-112 (114)
102 2khc_A Testis-specific RNP-typ 99.8 7.5E-19 2.6E-23 107.8 6.5 71 2-72 43-118 (118)
103 2rs2_A Musashi-1, RNA-binding 99.8 3E-18 1E-22 103.9 8.8 74 2-76 28-106 (109)
104 1rk8_A CG8781-PA, CG8781-PA pr 99.8 2.3E-18 7.7E-23 111.5 8.8 75 2-76 75-154 (165)
105 1x4e_A RNA binding motif, sing 99.8 2.6E-19 8.9E-24 103.8 3.9 71 2-72 8-83 (85)
106 2cqd_A RNA-binding region cont 99.8 1.8E-18 6.2E-23 105.8 7.7 74 2-76 20-98 (116)
107 2a3j_A U1 small nuclear ribonu 99.8 1.3E-18 4.5E-23 108.1 7.0 73 2-75 32-111 (127)
108 2cq4_A RNA binding motif prote 99.8 1.1E-18 3.7E-23 106.5 6.4 72 2-74 28-104 (114)
109 1uaw_A Mouse-musashi-1; RNP-ty 99.8 7.8E-19 2.7E-23 99.9 5.3 69 2-71 3-76 (77)
110 2ki2_A SS-DNA binding protein 99.8 2E-19 6.7E-24 105.4 2.7 74 2-76 4-82 (90)
111 1x4d_A Matrin 3; structural ge 99.8 2E-18 6.8E-23 103.3 7.1 71 2-76 18-94 (102)
112 2cqg_A TDP-43, TAR DNA-binding 99.8 9.9E-18 3.4E-22 100.4 9.9 74 2-77 18-96 (103)
113 2lea_A Serine/arginine-rich sp 99.8 1.3E-18 4.6E-23 109.2 6.2 75 2-76 50-129 (135)
114 2fc9_A NCL protein; structure 99.8 5.6E-18 1.9E-22 101.2 8.6 72 2-76 18-93 (101)
115 2m2b_A RNA-binding protein 10; 99.8 5.7E-19 1.9E-23 110.3 4.2 74 2-76 26-110 (131)
116 1wg5_A Heterogeneous nuclear r 99.7 3E-18 1E-22 103.0 7.0 73 2-75 18-95 (104)
117 2ad9_A Polypyrimidine tract-bi 99.7 5.4E-18 1.9E-22 103.9 8.1 71 2-76 34-109 (119)
118 1wez_A HnRNP H', FTP-3, hetero 99.7 5.4E-18 1.8E-22 101.6 7.9 73 2-76 18-94 (102)
119 2dis_A Unnamed protein product 99.7 2.3E-18 7.9E-23 104.2 6.0 75 2-76 11-94 (109)
120 2jvr_A Nucleolar protein 3; RN 99.7 3E-18 1E-22 104.1 6.6 71 2-74 31-105 (111)
121 2cpj_A Non-POU domain-containi 99.7 8.7E-18 3E-22 100.0 8.3 71 2-76 18-91 (99)
122 1wex_A Hypothetical protein (r 99.7 6.5E-18 2.2E-22 101.5 7.7 71 2-76 18-93 (104)
123 2cq1_A PTB-like protein L; RRM 99.7 1.2E-17 4.1E-22 99.9 8.8 71 2-76 18-93 (101)
124 1nu4_A U1A RNA binding domain; 99.7 2.6E-18 8.8E-23 101.9 5.6 74 2-76 11-91 (97)
125 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 4.7E-18 1.6E-22 106.9 7.2 70 2-71 66-140 (140)
126 2cpy_A RNA-binding protein 12; 99.7 3.1E-18 1.1E-22 104.5 6.0 72 2-74 18-94 (114)
127 1why_A Hypothetical protein ri 99.7 1.2E-17 4E-22 99.1 8.2 71 2-76 20-95 (97)
128 1x4f_A Matrin 3; structural ge 99.7 4.1E-18 1.4E-22 103.4 6.2 71 2-76 28-104 (112)
129 2db1_A Heterogeneous nuclear r 99.7 7.9E-18 2.7E-22 103.4 7.4 71 2-73 20-97 (118)
130 2hgl_A HNRPF protein, heteroge 99.7 3.9E-18 1.4E-22 107.1 6.1 71 2-73 47-124 (136)
131 2la4_A Nuclear and cytoplasmic 99.7 6.2E-18 2.1E-22 101.0 6.6 69 2-74 30-101 (101)
132 2dnn_A RNA-binding protein 12; 99.7 1.1E-17 3.8E-22 101.3 7.7 70 2-73 19-92 (109)
133 3q2s_C Cleavage and polyadenyl 99.7 3.7E-18 1.3E-22 115.9 6.1 72 2-73 71-149 (229)
134 3zzy_A Polypyrimidine tract-bi 99.7 1.9E-17 6.6E-22 102.8 8.7 71 2-75 31-107 (130)
135 2dnq_A RNA-binding protein 4B; 99.7 2.6E-17 8.9E-22 96.3 8.7 70 2-77 11-83 (90)
136 2dgt_A RNA-binding protein 30; 99.7 3.3E-17 1.1E-21 96.3 9.1 70 2-77 13-85 (92)
137 1whx_A Hypothetical protein ri 99.7 1.1E-17 3.7E-22 101.7 7.1 69 2-74 13-84 (111)
138 2ytc_A PRE-mRNA-splicing facto 99.7 1.5E-17 5.3E-22 96.2 7.5 67 2-72 15-85 (85)
139 1iqt_A AUF1, heterogeneous nuc 99.7 1.5E-18 5E-23 98.3 3.0 69 2-71 2-75 (75)
140 2e5j_A Methenyltetrahydrofolat 99.7 7.9E-18 2.7E-22 99.9 6.2 71 2-75 22-95 (97)
141 1x4g_A Nucleolysin TIAR; struc 99.7 1.9E-17 6.6E-22 100.2 8.0 71 2-76 28-101 (109)
142 2cpx_A Hypothetical protein FL 99.7 2E-18 6.9E-23 105.4 3.7 76 2-77 28-108 (115)
143 1fjc_A Nucleolin RBD2, protein 99.7 8.7E-18 3E-22 99.4 6.2 72 2-76 19-93 (96)
144 2jvo_A Nucleolar protein 3; nu 99.7 3.2E-17 1.1E-21 99.2 8.4 69 2-76 34-105 (108)
145 1wel_A RNA-binding protein 12; 99.7 2.7E-18 9.4E-23 106.3 3.6 71 2-73 28-103 (124)
146 1x4c_A Splicing factor, argini 99.7 3.7E-17 1.3E-21 98.8 8.5 70 2-76 18-95 (108)
147 3md3_A Nuclear and cytoplasmic 99.7 5.1E-17 1.7E-21 104.3 9.7 72 2-73 90-166 (166)
148 4f02_A Polyadenylate-binding p 99.7 2.3E-17 8E-22 110.7 8.2 74 2-75 106-182 (213)
149 2dnp_A RNA-binding protein 14; 99.7 3.9E-17 1.3E-21 95.5 8.2 69 2-76 12-83 (90)
150 2i2y_A Fusion protein consists 99.7 1.7E-17 5.7E-22 105.8 7.1 71 2-75 76-149 (150)
151 2dgu_A Heterogeneous nuclear r 99.7 4.6E-17 1.6E-21 97.6 8.4 70 2-77 14-86 (103)
152 1fj7_A Nucleolin RBD1, protein 99.7 1.2E-18 4.1E-23 104.1 1.2 73 2-76 20-97 (101)
153 2lcw_A RNA-binding protein FUS 99.5 6.7E-19 2.3E-23 107.8 0.0 76 2-77 10-98 (116)
154 2fc8_A NCL protein; structure 99.7 1.3E-16 4.5E-21 95.3 10.1 73 2-77 18-95 (102)
155 2xs2_A Deleted in azoospermia- 99.7 1.2E-17 4.1E-22 99.9 5.2 72 2-75 12-87 (102)
156 2cpd_A Apobec-1 stimulating pr 99.7 1.3E-16 4.4E-21 94.9 9.5 69 2-76 18-91 (99)
157 3egn_A RNA-binding protein 40; 99.7 2E-17 6.7E-22 104.7 6.2 74 2-75 48-131 (143)
158 2f3j_A RNA and export factor b 99.7 2.7E-17 9.2E-22 107.6 7.0 74 2-75 91-168 (177)
159 2xnq_A Nuclear polyadenylated 99.7 7.9E-17 2.7E-21 95.6 8.4 68 2-75 25-96 (97)
160 1sjr_A Polypyrimidine tract-bi 99.7 3E-17 1E-21 105.5 6.8 72 2-75 49-125 (164)
161 2dha_A FLJ20171 protein; RRM d 99.7 1.4E-17 4.7E-22 102.9 4.8 71 2-73 26-104 (123)
162 2lmi_A GRSF-1, G-rich sequence 99.7 6.4E-18 2.2E-22 102.1 3.3 71 2-73 14-91 (107)
163 2qfj_A FBP-interacting repress 99.7 1.1E-16 3.8E-21 107.0 9.6 75 2-76 128-207 (216)
164 2cqh_A IGF-II mRNA-binding pro 99.7 4.6E-17 1.6E-21 95.8 6.8 71 2-77 11-86 (93)
165 2e5i_A Heterogeneous nuclear r 99.7 1.1E-16 3.6E-21 98.9 8.7 70 2-75 28-103 (124)
166 2g4b_A Splicing factor U2AF 65 99.7 7.6E-17 2.6E-21 104.3 8.3 71 2-72 97-172 (172)
167 3pgw_S U1-70K; protein-RNA com 99.7 5.7E-17 2E-21 119.2 8.6 74 2-75 105-183 (437)
168 2kvi_A Nuclear polyadenylated 99.7 6.8E-17 2.3E-21 95.7 7.4 69 2-76 13-85 (96)
169 2diu_A KIAA0430 protein; struc 99.7 5.7E-17 2E-21 94.5 6.8 67 2-76 12-86 (96)
170 2cjk_A Nuclear polyadenylated 99.7 3.3E-17 1.1E-21 105.6 6.1 72 2-74 90-166 (167)
171 2j8a_A Histone-lysine N-methyl 99.7 5E-17 1.7E-21 99.9 6.4 72 2-73 5-95 (136)
172 1wf1_A RNA-binding protein RAL 99.7 7.6E-17 2.6E-21 97.7 7.2 68 2-75 30-101 (110)
173 2yh0_A Splicing factor U2AF 65 99.7 1.2E-16 4.1E-21 105.5 8.3 75 2-76 117-196 (198)
174 2hgn_A Heterogeneous nuclear r 99.7 1.4E-17 4.6E-22 105.0 3.3 72 2-75 49-124 (139)
175 1wg1_A KIAA1579 protein, homol 99.7 1.6E-16 5.6E-21 92.6 7.6 68 2-74 8-78 (88)
176 1l3k_A Heterogeneous nuclear r 99.7 2.3E-16 7.8E-21 104.0 8.9 75 2-77 107-186 (196)
177 2cq2_A Hypothetical protein LO 99.7 1.1E-16 3.9E-21 97.2 6.9 70 2-75 28-107 (114)
178 2lea_A Serine/arginine-rich sp 99.7 9.8E-18 3.3E-22 105.3 2.2 98 37-135 5-103 (135)
179 3d2w_A TAR DNA-binding protein 99.7 2.4E-16 8.3E-21 92.1 7.5 68 2-76 14-86 (89)
180 3nmr_A Cugbp ELAV-like family 99.7 2.7E-16 9.3E-21 101.8 8.5 71 2-72 98-175 (175)
181 1x5p_A Negative elongation fac 99.7 6.5E-16 2.2E-20 91.5 9.4 71 2-76 18-89 (97)
182 2pe8_A Splicing factor 45; RRM 99.7 4.9E-16 1.7E-20 93.5 8.7 72 2-73 11-93 (105)
183 2voo_A Lupus LA protein; RNA-b 99.7 3.6E-16 1.2E-20 103.6 8.8 71 2-73 112-186 (193)
184 2e5g_A U6 snRNA-specific termi 99.7 3.7E-16 1.2E-20 92.1 7.4 70 2-76 11-84 (94)
185 1b7f_A Protein (SXL-lethal pro 99.7 6.2E-16 2.1E-20 99.5 8.8 70 2-71 92-168 (168)
186 4fxv_A ELAV-like protein 1; RN 99.6 1.9E-16 6.3E-21 94.4 5.6 58 78-135 17-75 (99)
187 3beg_B Splicing factor, argini 99.6 3.5E-16 1.2E-20 95.6 6.9 69 2-75 19-95 (115)
188 1fje_B Nucleolin RBD12, protei 99.6 5.7E-16 1.9E-20 100.6 8.1 70 2-74 102-174 (175)
189 2dnl_A Cytoplasmic polyadenyla 99.6 3.2E-16 1.1E-20 95.6 6.5 67 2-71 11-85 (114)
190 2hgm_A HNRPF protein, heteroge 99.6 1E-16 3.4E-21 99.3 4.1 70 2-73 45-120 (126)
191 1jmt_A Splicing factor U2AF 35 99.6 3.1E-16 1.1E-20 94.2 6.1 59 13-71 43-103 (104)
192 1fxl_A Paraneoplastic encephal 99.6 9.4E-16 3.2E-20 98.4 8.4 70 2-71 91-167 (167)
193 2e44_A Insulin-like growth fac 99.6 3.3E-16 1.1E-20 92.5 5.7 72 2-75 18-93 (96)
194 3u1l_A PRE-mRNA-splicing facto 99.6 8.1E-16 2.8E-20 104.6 8.2 70 2-75 137-230 (240)
195 2bz2_A Negative elongation fac 99.6 1.1E-15 3.9E-20 94.1 7.7 71 2-76 42-113 (121)
196 1wf0_A TDP-43, TAR DNA-binding 99.6 5.2E-16 1.8E-20 90.4 5.2 71 2-77 8-81 (88)
197 2hzc_A Splicing factor U2AF 65 99.6 9.1E-16 3.1E-20 89.0 6.1 64 2-70 9-86 (87)
198 3s7r_A Heterogeneous nuclear r 99.6 3E-15 1E-19 86.8 6.5 60 76-135 7-67 (87)
199 3ue2_A Poly(U)-binding-splicin 99.6 7.3E-15 2.5E-19 90.0 8.4 60 13-72 42-107 (118)
200 2lxi_A RNA-binding protein 10; 99.6 1.5E-16 5.3E-21 93.3 0.6 56 80-135 1-58 (91)
201 1s79_A Lupus LA protein; RRM, 99.6 2.3E-15 8E-20 90.2 5.5 58 78-135 9-66 (103)
202 3s8s_A Histone-lysine N-methyl 99.6 3.1E-15 1E-19 90.7 6.1 57 79-135 5-62 (110)
203 2dit_A HIV TAT specific factor 99.6 1.5E-14 5.2E-19 87.8 9.0 62 13-76 43-104 (112)
204 2lkz_A RNA-binding protein 5; 99.6 8.8E-16 3E-20 90.7 3.2 57 79-135 8-67 (95)
205 3v4m_A Splicing factor U2AF 65 99.6 1.1E-14 3.8E-19 87.5 7.4 61 13-73 32-96 (105)
206 2adc_A Polypyrimidine tract-bi 99.5 1.8E-14 6.2E-19 97.5 7.8 70 2-74 154-228 (229)
207 1qm9_A Polypyrimidine tract-bi 99.5 1.2E-14 4E-19 96.2 6.6 70 2-74 123-197 (198)
208 2dnm_A SRP46 splicing factor; 99.5 1.5E-14 5.1E-19 86.5 6.4 63 73-135 6-69 (103)
209 3pgw_A U1-A; protein-RNA compl 99.5 2.6E-14 9E-19 99.2 8.6 68 2-72 210-281 (282)
210 2dgs_A DAZ-associated protein 99.5 1.6E-14 5.4E-19 85.7 6.5 59 77-135 7-66 (99)
211 4f25_A Polyadenylate-binding p 99.5 5E-15 1.7E-19 90.4 4.2 55 80-135 5-59 (115)
212 1x4e_A RNA binding motif, sing 99.5 1.4E-14 4.8E-19 83.6 6.0 57 79-135 4-61 (85)
213 3sde_A Paraspeckle component 1 99.5 3.4E-14 1.2E-18 98.0 8.8 74 2-75 99-180 (261)
214 2cq0_A Eukaryotic translation 99.5 1.6E-14 5.4E-19 86.3 6.2 62 74-135 9-71 (103)
215 2dnh_A Bruno-like 5, RNA bindi 99.5 1.8E-14 6.2E-19 86.3 6.5 59 77-135 12-70 (105)
216 1uaw_A Mouse-musashi-1; RNP-ty 99.5 5.6E-15 1.9E-19 83.7 4.0 55 81-135 1-56 (77)
217 3tyt_A Heterogeneous nuclear r 99.5 1.4E-14 4.8E-19 96.7 6.3 70 2-71 126-204 (205)
218 3md1_A Nuclear and cytoplasmic 99.5 1.5E-14 5.3E-19 83.0 5.6 55 81-135 2-57 (83)
219 2rs2_A Musashi-1, RNA-binding 99.5 1.2E-14 4.2E-19 87.8 5.3 59 77-135 22-81 (109)
220 1x5u_A Splicing factor 3B subu 99.5 1.6E-14 5.6E-19 86.5 5.8 61 75-135 10-71 (105)
221 2e5h_A Zinc finger CCHC-type a 99.5 2.4E-14 8.1E-19 84.1 6.3 59 77-135 13-72 (94)
222 2cqg_A TDP-43, TAR DNA-binding 99.5 2E-14 6.9E-19 85.9 6.0 59 77-135 12-71 (103)
223 1rk8_A CG8781-PA, CG8781-PA pr 99.5 1.4E-14 4.8E-19 93.6 5.6 95 41-135 11-128 (165)
224 1sjq_A Polypyrimidine tract-bi 99.5 7.2E-15 2.5E-19 88.0 3.8 53 78-135 14-66 (105)
225 2cqc_A Arginine/serine-rich sp 99.5 2.1E-14 7.2E-19 84.5 5.6 59 77-135 12-71 (95)
226 2dh8_A DAZ-associated protein 99.5 2.5E-14 8.6E-19 85.7 6.0 59 77-135 13-72 (105)
227 3pgw_S U1-70K; protein-RNA com 99.5 2.4E-15 8.1E-20 110.6 1.7 58 78-135 100-158 (437)
228 2dnz_A Probable RNA-binding pr 99.5 3.6E-14 1.2E-18 83.5 6.4 57 79-135 4-61 (95)
229 3bs9_A Nucleolysin TIA-1 isofo 99.5 1.9E-14 6.4E-19 83.4 5.0 57 79-135 5-62 (87)
230 3d2w_A TAR DNA-binding protein 99.5 2E-14 6.7E-19 83.9 5.0 54 78-135 9-62 (89)
231 3mdf_A Peptidyl-prolyl CIS-tra 99.5 1.3E-14 4.6E-19 83.6 4.2 58 78-135 5-63 (85)
232 3ucg_A Polyadenylate-binding p 99.5 3.1E-14 1E-18 82.8 5.8 57 79-135 5-62 (89)
233 2jrs_A RNA-binding protein 39; 99.5 3.1E-14 1E-18 86.0 5.9 59 77-135 23-82 (108)
234 2ywk_A Putative RNA-binding pr 99.5 2.2E-14 7.6E-19 84.4 5.1 58 78-135 14-71 (95)
235 2voo_A Lupus LA protein; RNA-b 99.5 9.9E-14 3.4E-18 91.8 8.8 91 45-135 63-164 (193)
236 2cqd_A RNA-binding region cont 99.5 3.4E-14 1.2E-18 86.6 6.1 59 77-135 14-73 (116)
237 2dgo_A Cytotoxic granule-assoc 99.5 3.5E-14 1.2E-18 86.4 6.1 60 76-135 11-71 (115)
238 2div_A TRNA selenocysteine ass 99.5 2.5E-14 8.7E-19 84.8 5.3 58 78-135 7-66 (99)
239 2cq3_A RNA-binding protein 9; 99.5 5.4E-14 1.8E-18 84.0 6.7 58 77-135 12-69 (103)
240 2mss_A Protein (musashi1); RNA 99.5 9.7E-15 3.3E-19 82.4 3.2 54 82-135 1-55 (75)
241 1whw_A Hypothetical protein ri 99.5 2.7E-14 9.1E-19 84.7 5.2 58 78-135 6-64 (99)
242 1x4h_A RNA-binding protein 28; 99.5 3.3E-14 1.1E-18 86.0 5.6 58 78-135 13-71 (111)
243 2hgn_A Heterogeneous nuclear r 99.5 1E-14 3.5E-19 91.8 3.4 97 37-135 2-100 (139)
244 2ad9_A Polypyrimidine tract-bi 99.5 3.5E-14 1.2E-18 86.9 5.7 54 77-135 28-81 (119)
245 2la6_A RNA-binding protein FUS 99.5 5.2E-14 1.8E-18 83.5 6.3 59 77-135 10-77 (99)
246 2cpz_A CUG triplet repeat RNA- 99.5 3.4E-14 1.2E-18 86.5 5.5 60 76-135 21-81 (115)
247 1p27_B RNA-binding protein 8A; 99.5 3.8E-14 1.3E-18 85.1 5.7 59 77-135 20-79 (106)
248 2cph_A RNA binding motif prote 99.5 3.5E-14 1.2E-18 85.3 5.5 60 76-135 11-72 (107)
249 2do4_A Squamous cell carcinoma 99.5 5.6E-14 1.9E-18 83.5 6.3 58 78-135 15-72 (100)
250 2x1f_A MRNA 3'-END-processing 99.5 2.8E-14 9.5E-19 84.2 4.9 56 80-135 2-58 (96)
251 2khc_A Testis-specific RNP-typ 99.5 4.3E-14 1.5E-18 86.4 5.9 59 77-135 37-96 (118)
252 2cq1_A PTB-like protein L; RRM 99.5 5.6E-14 1.9E-18 83.8 6.1 54 77-135 12-65 (101)
253 2dgp_A Bruno-like 4, RNA bindi 99.5 1.5E-14 5.1E-19 86.8 3.6 60 76-135 9-69 (106)
254 3p5t_L Cleavage and polyadenyl 99.5 1.2E-14 4E-19 85.0 3.0 55 81-135 2-59 (90)
255 2err_A Ataxin-2-binding protei 99.5 3.6E-14 1.2E-18 85.8 5.1 64 71-135 20-83 (109)
256 1iqt_A AUF1, heterogeneous nuc 99.5 7.9E-15 2.7E-19 82.7 2.0 54 82-135 1-55 (75)
257 2cqi_A Nucleolysin TIAR; RNA r 99.5 4.6E-14 1.6E-18 84.3 5.4 59 76-135 11-69 (103)
258 1wg5_A Heterogeneous nuclear r 99.5 5.9E-14 2E-18 84.1 5.8 58 78-135 13-71 (104)
259 1wez_A HnRNP H', FTP-3, hetero 99.5 6.3E-14 2.1E-18 83.8 5.8 57 77-135 12-69 (102)
260 2d9p_A Polyadenylate-binding p 99.5 7.4E-14 2.5E-18 83.4 6.2 58 77-135 12-69 (103)
261 2do0_A HnRNP M, heterogeneous 99.5 8.8E-14 3E-18 84.5 6.4 59 77-135 12-70 (114)
262 1x5t_A Splicing factor 3B subu 99.5 2.5E-14 8.6E-19 84.3 3.8 57 79-135 4-62 (96)
263 2xs2_A Deleted in azoospermia- 99.5 3.8E-14 1.3E-18 84.5 4.6 56 79-135 8-64 (102)
264 2kxn_B Transformer-2 protein h 99.5 6E-14 2E-18 87.3 5.6 59 77-135 43-102 (129)
265 2cqb_A Peptidyl-prolyl CIS-tra 99.5 3.5E-14 1.2E-18 84.6 4.4 58 78-135 10-68 (102)
266 2dhg_A TRNA selenocysteine ass 99.5 6.2E-14 2.1E-18 83.8 5.5 58 77-135 6-65 (104)
267 2cq4_A RNA binding motif prote 99.5 9.1E-14 3.1E-18 84.5 6.2 57 79-135 24-81 (114)
268 3ns6_A Eukaryotic translation 99.5 9.4E-15 3.2E-19 87.0 1.7 57 79-135 5-68 (100)
269 2fy1_A RNA-binding motif prote 99.5 6.7E-14 2.3E-18 85.5 5.5 58 78-135 5-62 (116)
270 1wi8_A EIF-4B, eukaryotic tran 99.5 8.3E-14 2.9E-18 83.3 5.8 58 77-135 12-71 (104)
271 1x5s_A Cold-inducible RNA-bind 99.5 4.5E-14 1.5E-18 84.2 4.5 59 77-135 9-68 (102)
272 2dng_A Eukaryotic translation 99.5 1.3E-13 4.5E-18 82.3 6.6 58 77-135 12-70 (103)
273 1x4d_A Matrin 3; structural ge 99.5 6.4E-14 2.2E-18 83.6 5.1 53 78-135 13-66 (102)
274 2cpy_A RNA-binding protein 12; 99.5 5.7E-14 2E-18 85.5 4.9 59 77-135 12-71 (114)
275 4a8x_A RNA-binding protein wit 99.5 4.3E-14 1.5E-18 81.9 3.9 57 79-135 3-61 (88)
276 3r27_A HnRNP L, heterogeneous 99.5 1.1E-13 3.7E-18 82.2 5.7 54 77-135 18-71 (100)
277 1x4b_A Heterogeneous nuclear r 99.5 8.4E-14 2.9E-18 84.9 5.3 57 79-135 26-83 (116)
278 1x5o_A RNA binding motif, sing 99.5 1.4E-13 4.9E-18 83.6 6.3 58 77-135 22-80 (114)
279 1oo0_B CG8781-PA, drosophila Y 99.5 7.4E-14 2.5E-18 84.3 4.9 59 77-135 23-82 (110)
280 3s6e_A RNA-binding protein 39; 99.5 2.4E-13 8.3E-18 82.7 7.2 58 13-72 34-91 (114)
281 1wex_A Hypothetical protein (r 99.4 1.6E-13 5.5E-18 82.2 6.1 53 78-135 13-65 (104)
282 3ulh_A THO complex subunit 4; 99.4 1.3E-13 4.3E-18 82.9 5.6 58 77-135 26-84 (107)
283 2dgx_A KIAA0430 protein; RRM d 99.4 7.3E-14 2.5E-18 82.5 4.2 56 78-135 7-66 (96)
284 2cpf_A RNA binding motif prote 99.4 7E-14 2.4E-18 82.7 4.1 57 79-135 4-64 (98)
285 3n9u_C Cleavage and polyadenyl 99.4 9.5E-14 3.2E-18 89.0 4.8 57 79-135 54-113 (156)
286 1wf0_A TDP-43, TAR DNA-binding 99.4 1.1E-13 3.7E-18 80.4 4.7 53 79-135 4-56 (88)
287 2dnn_A RNA-binding protein 12; 99.4 6.5E-14 2.2E-18 84.7 3.8 56 79-135 15-70 (109)
288 2d9o_A DNAJ (HSP40) homolog, s 99.4 5.8E-13 2E-17 79.2 7.8 59 13-76 34-92 (100)
289 2hgl_A HNRPF protein, heteroge 99.4 9.7E-14 3.3E-18 87.0 4.5 58 78-135 42-102 (136)
290 2db1_A Heterogeneous nuclear r 99.4 1.2E-13 4.2E-18 84.5 4.7 58 78-135 15-75 (118)
291 2cpe_A RNA-binding protein EWS 99.4 1.4E-13 4.8E-18 83.5 4.9 60 76-135 11-79 (113)
292 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.4 1.7E-13 5.9E-18 85.9 5.5 58 78-135 61-119 (140)
293 2hgm_A HNRPF protein, heteroge 99.4 2.6E-13 9E-18 83.9 6.1 57 78-135 40-98 (126)
294 1p1t_A Cleavage stimulation fa 99.4 8.9E-14 3E-18 83.1 3.8 57 79-135 7-64 (104)
295 2dgw_A Probable RNA-binding pr 99.4 2.9E-13 9.9E-18 79.0 5.9 58 77-135 7-64 (91)
296 1u6f_A Tcubp1, RNA-binding pro 99.4 1.2E-13 4E-18 86.8 4.4 58 78-135 40-98 (139)
297 3ex7_B RNA-binding protein 8A; 99.4 1.9E-13 6.5E-18 84.4 5.1 59 77-135 19-78 (126)
298 2dgv_A HnRNP M, heterogeneous 99.4 3.3E-13 1.1E-17 78.8 5.8 56 78-135 6-62 (92)
299 2cpi_A CCR4-NOT transcription 99.4 1.8E-13 6E-18 82.9 4.7 59 77-135 12-77 (111)
300 2j76_E EIF-4B, EIF4B, eukaryot 99.4 9E-14 3.1E-18 82.7 3.4 58 77-135 16-75 (100)
301 2kt5_A RNA and export factor-b 99.4 2.8E-13 9.4E-18 83.5 5.5 57 78-135 33-90 (124)
302 2lmi_A GRSF-1, G-rich sequence 99.4 1E-13 3.4E-18 83.5 3.5 59 77-135 8-69 (107)
303 2jwn_A Embryonic polyadenylate 99.4 1.4E-13 5E-18 84.7 4.2 57 79-135 35-92 (124)
304 2krb_A Eukaryotic translation 99.4 1.2E-13 4E-18 79.1 3.5 54 80-135 1-61 (81)
305 1h2v_Z 20 kDa nuclear CAP bind 99.4 3.4E-13 1.2E-17 86.3 6.0 59 77-135 36-95 (156)
306 2dnl_A Cytoplasmic polyadenyla 99.4 1.6E-13 5.4E-18 83.5 4.2 57 78-135 6-66 (114)
307 2cqp_A RNA-binding protein 12; 99.4 1E-13 3.4E-18 82.1 3.0 58 78-135 13-71 (98)
308 2ek1_A RNA-binding protein 12; 99.4 7.4E-14 2.5E-18 82.1 2.4 57 79-135 14-71 (95)
309 2dha_A FLJ20171 protein; RRM d 99.4 1.5E-13 5.1E-18 84.8 3.7 57 79-135 22-82 (123)
310 2ytc_A PRE-mRNA-splicing facto 99.4 4.4E-13 1.5E-17 77.2 5.5 54 77-135 9-62 (85)
311 2m2b_A RNA-binding protein 10; 99.4 1.2E-13 4.2E-18 86.0 3.3 57 78-135 21-80 (131)
312 1x4f_A Matrin 3; structural ge 99.4 3.5E-13 1.2E-17 81.7 5.1 54 77-135 22-76 (112)
313 2nlw_A Eukaryotic translation 99.4 3E-13 1E-17 81.1 4.7 60 74-135 9-75 (105)
314 2ki2_A SS-DNA binding protein 99.4 5.2E-14 1.8E-18 82.0 1.2 54 81-135 2-56 (90)
315 1wel_A RNA-binding protein 12; 99.4 1.6E-13 5.5E-18 84.7 3.5 58 78-135 23-81 (124)
316 1x4a_A Splicing factor, argini 99.4 6.2E-13 2.1E-17 80.1 5.8 57 77-135 19-75 (109)
317 1x4c_A Splicing factor, argini 99.4 4.7E-13 1.6E-17 80.6 5.2 52 78-135 13-64 (108)
318 3lqv_A PRE-mRNA branch site pr 99.4 7.9E-13 2.7E-17 80.4 6.0 55 79-135 7-61 (115)
319 2dis_A Unnamed protein product 99.4 2.3E-13 8E-18 81.9 3.4 57 79-135 7-66 (109)
320 1why_A Hypothetical protein ri 99.4 3.9E-13 1.3E-17 79.4 4.2 52 79-135 16-67 (97)
321 3q2s_C Cleavage and polyadenyl 99.4 6E-13 2.1E-17 90.2 5.6 57 79-135 67-126 (229)
322 2wbr_A GW182, gawky, LD47780P; 99.4 2.2E-13 7.4E-18 78.6 2.9 52 79-135 6-57 (89)
323 2cpj_A Non-POU domain-containi 99.4 9.8E-13 3.3E-17 77.9 5.7 53 78-135 13-65 (99)
324 2e5g_A U6 snRNA-specific termi 99.4 1.4E-12 4.7E-17 76.6 6.2 53 79-135 7-59 (94)
325 3tht_A Alkylated DNA repair pr 99.4 1.5E-12 5E-17 92.9 7.1 67 2-72 21-97 (345)
326 2dnq_A RNA-binding protein 4B; 99.4 1.3E-12 4.5E-17 76.1 5.5 51 78-135 6-56 (90)
327 2dgt_A RNA-binding protein 30; 99.3 9.1E-13 3.1E-17 77.1 4.4 52 77-135 7-58 (92)
328 1wf1_A RNA-binding protein RAL 99.3 7.3E-13 2.5E-17 80.0 4.0 67 62-135 6-76 (110)
329 2hvz_A Splicing factor, argini 99.3 4.8E-13 1.6E-17 79.5 3.1 51 81-135 1-51 (101)
330 2j8a_A Histone-lysine N-methyl 99.3 1.1E-12 3.9E-17 80.6 4.6 50 81-130 3-57 (136)
331 2dnp_A RNA-binding protein 14; 99.3 9.5E-13 3.2E-17 76.7 3.8 52 77-135 6-57 (90)
332 2jvo_A Nucleolar protein 3; nu 99.3 1.8E-12 6.3E-17 78.1 5.1 52 77-135 28-79 (108)
333 2fc9_A NCL protein; structure 99.3 2.2E-12 7.4E-17 76.7 5.2 56 77-135 12-67 (101)
334 2jvr_A Nucleolar protein 3; RN 99.3 5.1E-13 1.7E-17 80.9 2.3 66 64-135 15-81 (111)
335 1x4g_A Nucleolysin TIAR; struc 99.3 1.2E-12 4.1E-17 78.9 3.9 53 78-135 23-75 (109)
336 2lcw_A RNA-binding protein FUS 99.0 1.7E-13 5.6E-18 83.6 0.0 59 78-136 5-72 (116)
337 2e44_A Insulin-like growth fac 99.3 7.5E-13 2.6E-17 77.9 2.7 55 78-135 13-68 (96)
338 3beg_B Splicing factor, argini 99.3 6.3E-13 2.1E-17 81.0 2.4 51 79-135 15-65 (115)
339 2la4_A Nuclear and cytoplasmic 99.3 3.2E-12 1.1E-16 75.9 5.2 52 79-135 26-77 (101)
340 2kvi_A Nuclear polyadenylated 99.3 2.7E-12 9.3E-17 75.6 4.7 52 77-135 7-59 (96)
341 2dgu_A Heterogeneous nuclear r 99.3 2.2E-12 7.5E-17 77.0 4.0 51 78-135 9-59 (103)
342 2f3j_A RNA and export factor b 99.3 2.9E-12 1E-16 83.7 4.7 57 79-135 87-143 (177)
343 1whx_A Hypothetical protein ri 99.3 2.3E-12 7.8E-17 78.0 3.6 52 79-135 9-60 (111)
344 2xnq_A Nuclear polyadenylated 99.3 6E-12 2E-16 74.4 4.9 52 77-135 19-71 (97)
345 2a3j_A U1 small nuclear ribonu 99.3 5.6E-12 1.9E-16 78.1 4.6 57 77-135 26-86 (127)
346 2cq2_A Hypothetical protein LO 99.2 2.2E-12 7.7E-17 78.2 2.6 53 78-135 23-77 (114)
347 2e5j_A Methenyltetrahydrofolat 99.2 5.4E-12 1.9E-16 74.4 4.2 54 78-135 17-70 (97)
348 2fc8_A NCL protein; structure 99.2 1.2E-11 4.2E-16 73.5 5.6 59 74-135 9-68 (102)
349 1nu4_A U1A RNA binding domain; 99.2 1.8E-12 6.2E-17 76.4 1.5 56 78-135 6-65 (97)
350 2hzc_A Splicing factor U2AF 65 99.2 5.1E-12 1.8E-16 72.9 2.9 52 79-135 5-67 (87)
351 1fj7_A Nucleolin RBD1, protein 99.2 3.2E-13 1.1E-17 80.3 -2.3 57 78-135 15-72 (101)
352 3dxb_A Thioredoxin N-terminall 99.2 5.3E-11 1.8E-15 80.1 8.2 60 13-72 146-211 (222)
353 2cpd_A Apobec-1 stimulating pr 99.2 2.6E-11 8.7E-16 71.7 5.7 51 78-135 13-65 (99)
354 3zzy_A Polypyrimidine tract-bi 99.2 1.8E-11 6.2E-16 75.8 5.0 52 80-135 28-80 (130)
355 1wg1_A KIAA1579 protein, homol 99.2 1.3E-11 4.6E-16 71.5 3.8 51 79-135 4-54 (88)
356 2dnr_A Synaptojanin-1; RRM dom 99.2 4.9E-11 1.7E-15 68.9 6.1 55 13-74 32-86 (91)
357 2cpx_A Hypothetical protein FL 99.2 1.4E-11 4.8E-16 74.7 3.7 54 78-135 23-81 (115)
358 1sjr_A Polypyrimidine tract-bi 99.2 1.8E-11 6E-16 78.6 3.8 54 79-135 45-98 (164)
359 1fjc_A Nucleolin RBD2, protein 99.2 6.1E-12 2.1E-16 74.0 1.5 55 77-135 13-67 (96)
360 2cqh_A IGF-II mRNA-binding pro 99.1 1.8E-11 6.2E-16 71.6 3.0 52 78-135 6-58 (93)
361 2e5i_A Heterogeneous nuclear r 99.1 8.1E-11 2.8E-15 72.5 6.0 50 81-135 26-76 (124)
362 1x5p_A Negative elongation fac 99.1 2.6E-10 8.8E-15 67.1 6.3 51 78-135 13-63 (97)
363 3egn_A RNA-binding protein 40; 99.1 2.4E-11 8.3E-16 76.5 1.5 57 77-135 42-106 (143)
364 2diu_A KIAA0430 protein; struc 99.1 1.7E-10 5.9E-15 67.2 4.6 47 80-135 8-60 (96)
365 2pe8_A Splicing factor 45; RRM 99.0 5E-10 1.7E-14 67.0 5.3 57 79-135 7-70 (105)
366 3u1l_A PRE-mRNA-splicing facto 99.0 2.1E-10 7.1E-15 78.0 3.7 53 78-135 132-193 (240)
367 2bz2_A Negative elongation fac 99.0 4.9E-10 1.7E-14 68.7 4.6 51 78-135 37-87 (121)
368 1owx_A Lupus LA protein, SS-B, 99.0 1.6E-09 5.6E-14 66.1 6.4 65 2-70 21-92 (121)
369 1ufw_A Synaptojanin 2; RNP dom 99.0 9.3E-10 3.2E-14 63.9 4.8 53 13-72 41-93 (95)
370 3tht_A Alkylated DNA repair pr 98.9 5.3E-10 1.8E-14 79.7 3.7 53 78-135 16-70 (345)
371 1owx_A Lupus LA protein, SS-B, 98.9 1.5E-09 5.1E-14 66.3 4.6 53 77-134 15-69 (121)
372 2dit_A HIV TAT specific factor 98.8 7.8E-09 2.7E-13 62.4 5.2 55 78-135 13-78 (112)
373 2d9o_A DNAJ (HSP40) homolog, s 98.8 1.8E-08 6.1E-13 59.7 6.4 43 89-135 26-68 (100)
374 3v4m_A Splicing factor U2AF 65 98.8 3E-09 1E-13 63.6 2.9 57 79-135 4-73 (105)
375 1jmt_A Splicing factor U2AF 35 98.6 1.1E-09 3.8E-14 65.4 -1.9 51 85-135 20-82 (104)
376 3ue2_A Poly(U)-binding-splicin 98.6 2.1E-08 7.3E-13 61.1 3.5 57 79-135 19-85 (118)
377 2l9w_A U4/U6 snRNA-associated- 98.5 7.9E-07 2.7E-11 52.8 7.0 65 2-70 24-96 (117)
378 3s6e_A RNA-binding protein 39; 98.3 3.8E-07 1.3E-11 55.2 2.3 54 79-135 6-69 (114)
379 2dhx_A Poly (ADP-ribose) polym 98.2 2.1E-05 7.1E-10 46.2 8.1 81 2-93 11-99 (104)
380 1wey_A Calcipressin 1; structu 98.1 1.7E-05 5.8E-10 46.7 6.8 69 2-74 8-84 (104)
381 2dnr_A Synaptojanin-1; RRM dom 97.9 1.3E-05 4.3E-10 46.2 3.8 50 78-134 5-62 (91)
382 3dxb_A Thioredoxin N-terminall 97.7 1.5E-05 5E-10 53.3 2.7 45 91-135 140-189 (222)
383 1uw4_A UPF3X; nonsense mediate 97.7 0.00017 5.9E-09 41.6 6.2 54 81-134 2-58 (91)
384 1ufw_A Synaptojanin 2; RNP dom 97.6 3.5E-05 1.2E-09 44.6 2.1 52 77-135 12-72 (95)
385 2l9w_A U4/U6 snRNA-associated- 97.3 0.00035 1.2E-08 41.5 4.4 51 79-134 20-75 (117)
386 1wwh_A Nucleoporin 35, nucleop 97.2 0.0019 6.7E-08 38.9 6.8 65 2-71 27-94 (119)
387 2l08_A Regulator of nonsense t 97.0 0.00051 1.7E-08 40.0 3.1 56 79-134 8-66 (97)
388 1whv_A Poly(A)-specific ribonu 96.8 0.0026 8.9E-08 36.9 4.7 49 2-56 18-69 (100)
389 3ctr_A Poly(A)-specific ribonu 96.7 0.0025 8.6E-08 37.1 4.3 46 83-135 8-53 (101)
390 1whv_A Poly(A)-specific ribonu 96.7 0.0036 1.2E-07 36.3 4.9 47 81-135 17-63 (100)
391 3p3d_A Nucleoporin 53; structu 96.6 0.0063 2.2E-07 37.3 5.5 70 2-72 10-97 (132)
392 1uw4_A UPF3X; nonsense mediate 96.6 0.0035 1.2E-07 36.1 4.1 62 2-63 4-72 (91)
393 2dhx_A Poly (ADP-ribose) polym 96.4 0.0065 2.2E-07 35.6 4.6 50 79-135 7-61 (104)
394 2l08_A Regulator of nonsense t 96.3 0.0079 2.7E-07 34.9 4.8 61 2-62 12-79 (97)
395 3ctr_A Poly(A)-specific ribonu 95.8 0.0078 2.7E-07 35.0 2.9 49 3-57 9-60 (101)
396 3pq1_A Poly(A) RNA polymerase; 95.7 0.0074 2.5E-07 44.7 3.2 51 80-135 53-103 (464)
397 3pq1_A Poly(A) RNA polymerase; 95.0 0.014 4.9E-07 43.2 2.8 49 2-54 56-107 (464)
398 1wey_A Calcipressin 1; structu 90.3 0.32 1.1E-05 28.5 3.4 51 79-134 4-59 (104)
399 1wwh_A Nucleoporin 35, nucleop 88.9 0.56 1.9E-05 28.1 3.8 52 79-136 23-74 (119)
400 3d45_A Poly(A)-specific ribonu 86.2 1.3 4.3E-05 33.3 5.1 48 80-135 440-487 (507)
401 3d45_A Poly(A)-specific ribonu 71.2 9.2 0.00031 28.7 5.6 45 7-57 447-494 (507)
402 2g0c_A ATP-dependent RNA helic 59.2 6.3 0.00022 21.0 2.1 35 37-72 41-75 (76)
403 2gu3_A YPMB protein; APC1927, 57.8 17 0.00059 22.1 4.1 51 85-135 68-132 (136)
404 4e8u_A Putative uncharacterize 57.2 24 0.00081 22.5 4.7 47 1-48 14-74 (172)
405 2qyc_A Ferredoxin-like protein 47.0 30 0.001 19.5 3.8 49 87-135 12-70 (103)
406 3bgu_A Ferredoxin-like protein 44.2 31 0.0011 20.1 3.6 53 83-135 25-87 (116)
407 3lpe_A Putative transcription 43.1 32 0.0011 19.2 3.4 33 23-58 40-72 (92)
408 1q4r_A Protein AT3G17210; cent 42.2 27 0.00092 20.1 3.1 53 83-135 14-78 (112)
409 1tr0_A Stable protein 1; plant 39.8 44 0.0015 18.9 3.8 53 83-135 12-78 (108)
410 3h7h_B Transcription elongatio 39.0 32 0.0011 19.9 3.1 34 22-58 40-73 (106)
411 3bb5_A Stress responsive alpha 37.6 62 0.0021 18.9 4.4 54 82-135 23-88 (121)
412 3j21_T 50S ribosomal protein L 36.8 39 0.0013 18.8 3.0 50 83-134 25-76 (86)
413 3bde_A MLL5499 protein; stress 35.2 63 0.0021 18.9 4.0 50 86-135 27-85 (120)
414 2i9x_A Putative septation prot 34.0 63 0.0022 18.0 3.7 24 22-45 5-30 (87)
415 2ko4_A Mediator of RNA polymer 32.2 27 0.00093 19.2 1.8 19 85-103 29-48 (81)
416 2ia9_A Putative septation prot 31.0 77 0.0026 18.2 3.7 24 22-45 5-30 (100)
417 4eyt_A Telomerase associated p 30.9 54 0.0019 18.5 3.0 20 37-56 47-66 (129)
418 1xn9_A 30S ribosomal protein S 30.1 82 0.0028 18.1 5.0 22 31-53 60-81 (101)
419 2i9z_A Putative septation prot 29.3 87 0.003 18.1 3.8 24 22-45 5-30 (105)
420 3ulj_A LIN28B, DNA-binding pro 29.1 33 0.0011 19.2 1.9 10 34-43 18-27 (90)
421 2k5n_A Putative cold-shock pro 28.4 21 0.00073 19.1 1.0 12 34-45 12-23 (74)
422 3fmb_A Dimeric protein of unkn 28.1 93 0.0032 18.1 3.9 53 83-135 24-89 (118)
423 2kcm_A Cold shock domain famil 27.1 21 0.00073 19.2 0.9 12 34-45 10-21 (74)
424 1rjj_A Expressed protein; beta 27.0 54 0.0018 18.7 2.7 38 98-135 28-71 (111)
425 1ywx_A 30S ribosomal protein S 27.0 95 0.0033 17.8 5.0 21 31-52 60-80 (102)
426 3cam_A Cold-shock domain famil 26.8 22 0.00075 18.6 0.9 12 34-45 11-22 (67)
427 3p8b_B Transcription antitermi 26.6 73 0.0025 19.4 3.4 33 23-58 33-65 (152)
428 1c9o_A CSPB, cold-shock protei 26.6 22 0.00077 18.4 0.9 12 34-45 11-22 (66)
429 2h7a_A Hypothetical protein YC 26.3 74 0.0025 18.6 3.1 56 1-61 28-84 (110)
430 2v94_A RPS24, 30S ribosomal pr 25.5 1E+02 0.0036 17.8 4.6 21 31-52 69-89 (107)
431 3a0j_A Cold shock protein; OB- 25.3 24 0.00083 18.8 0.9 12 34-45 11-22 (73)
432 1g6p_A Cold shock protein TMCS 24.7 25 0.00087 18.2 0.9 12 34-45 10-21 (66)
433 1h95_A CSD, Y-box binding prot 24.5 28 0.00095 18.9 1.0 11 34-44 18-28 (79)
434 2jsh_A Appetite-regulating hor 24.2 45 0.0015 14.1 1.4 22 87-108 2-23 (26)
435 4bby_A Alkyldihydroxyacetoneph 23.8 1.6E+02 0.0054 22.8 5.4 44 13-56 360-408 (658)
436 3ts2_A Protein LIN-28 homolog 23.8 17 0.00057 22.4 0.0 11 34-44 19-29 (148)
437 3i2z_B RNA chaperone, negative 22.9 29 0.00099 18.4 0.9 12 34-45 15-26 (71)
438 2g1d_A 30S ribosomal protein S 22.7 43 0.0015 19.1 1.6 19 32-51 62-80 (98)
439 1vq8_S 50S ribosomal protein L 22.1 57 0.0019 18.1 2.0 49 83-133 24-74 (85)
440 1wvf_A 4-cresol dehydrogenase 21.1 1.3E+02 0.0045 22.3 4.4 41 13-53 218-261 (520)
441 2yty_A Cold shock domain-conta 21.1 37 0.0013 18.9 1.1 10 36-45 28-37 (88)
442 2ytx_A Cold shock domain-conta 20.2 39 0.0013 19.1 1.1 11 35-45 27-37 (97)
443 3bn7_A Ferredoxin-like protein 20.2 1.3E+02 0.0045 17.5 3.5 53 83-135 24-90 (120)
No 1
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=6.4e-34 Score=184.54 Aligned_cols=134 Identities=34% Similarity=0.621 Sum_probs=126.3
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~ 76 (136)
|||+|||..++ |+++|++||+|.++.+++ .+|+++|||||+|.+.++|+.|+..+||..+.|++|.+.++.+...
T Consensus 6 l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~ 85 (168)
T 1b7f_A 6 LIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGE 85 (168)
T ss_dssp EEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCSS
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCCCcc
Confidence 79999999998 999999999999999988 6899999999999999999999999999999999999999999888
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCc-cceEeecCcccccc
Q psy6353 77 SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATEN-GKYYSGLGGRERLR 135 (136)
Q Consensus 77 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~-~~~fv~f~~~e~~~ 135 (136)
.....+|+|+|||..+++++|+++|++||.|..+.++++..++.. +.|||+|.+.|+|.
T Consensus 86 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~ 145 (168)
T 1b7f_A 86 SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQ 145 (168)
T ss_dssp TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHH
T ss_pred cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHH
Confidence 888999999999999999999999999999999999999866665 56999999999875
No 2
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=8e-34 Score=183.70 Aligned_cols=134 Identities=57% Similarity=0.824 Sum_probs=126.4
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~ 76 (136)
|||+|||..++ |+++|++||+|.++.+++ .+|+++|||||+|.+.++|+.|+..+||..+.|+++.+.++.+...
T Consensus 5 l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~ 84 (167)
T 1fxl_A 5 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSA 84 (167)
T ss_dssp EEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCG
T ss_pred EEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCCCcc
Confidence 79999999998 999999999999999998 5899999999999999999999999999999999999999998887
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCc-cceEeecCcccccc
Q psy6353 77 SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATEN-GKYYSGLGGRERLR 135 (136)
Q Consensus 77 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~-~~~fv~f~~~e~~~ 135 (136)
.....+|+|+|||..+++++|+++|++||.|..+.++.++.+|.+ +.|||+|.+.|+|.
T Consensus 85 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~ 144 (167)
T 1fxl_A 85 SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAE 144 (167)
T ss_dssp GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHH
T ss_pred cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHH
Confidence 778899999999999999999999999999999999999877775 55999999999875
No 3
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.6e-33 Score=179.53 Aligned_cols=134 Identities=22% Similarity=0.375 Sum_probs=122.7
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc-cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCC-
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI-STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE- 76 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~-~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~- 76 (136)
|||+|||..++ |+++|++||+|.++.+++ .+++++|||||+|.+.++|+.|+..+||..+.|+++.+.++.+...
T Consensus 3 l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~~~ 82 (166)
T 3md3_A 3 LYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQQS 82 (166)
T ss_dssp EEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCCC
T ss_pred EEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCCCC
Confidence 79999999998 999999999999999999 7788999999999999999999999999999999999998876543
Q ss_pred -CCCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCcc-ceEeecCcccccc
Q psy6353 77 -SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG-KYYSGLGGRERLR 135 (136)
Q Consensus 77 -~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~-~~fv~f~~~e~~~ 135 (136)
.....+|||+|||..+++++|+++|++||.|..+.+++++.++..+ .|||+|.+.|+|.
T Consensus 83 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~ 143 (166)
T 3md3_A 83 SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQ 143 (166)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHH
T ss_pred CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHH
Confidence 3467899999999999999999999999999999999998887774 5999999999875
No 4
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=2e-32 Score=181.57 Aligned_cols=133 Identities=20% Similarity=0.376 Sum_probs=118.9
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~ 76 (136)
|||+|||..++ |+++|++||+|.++.+++ .+|.++|||||+|.+.++|++|+.. ++..+.|+.|.+.++.+...
T Consensus 16 l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~~~~~~~ 94 (196)
T 1l3k_A 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSRED 94 (196)
T ss_dssp EEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEECCC---
T ss_pred EEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeecccCccc
Confidence 89999999998 999999999999999998 6799999999999999999999985 89999999999998876543
Q ss_pred C------CCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCc-cceEeecCcccccc
Q psy6353 77 S------IKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATEN-GKYYSGLGGRERLR 135 (136)
Q Consensus 77 ~------~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~-~~~fv~f~~~e~~~ 135 (136)
. ...++|||+|||.++|+++|+++|++||.|..+.++.+..++.. +.|||+|.+.|+|.
T Consensus 95 ~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~ 160 (196)
T 1l3k_A 95 SQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVD 160 (196)
T ss_dssp --------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHH
T ss_pred ccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHH
Confidence 2 24589999999999999999999999999999999999877776 55999999999875
No 5
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=7.3e-33 Score=186.54 Aligned_cols=133 Identities=23% Similarity=0.396 Sum_probs=121.1
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~ 76 (136)
|||+|||..+| |+++|++||+|.+|++++ .+++++|||||+|.+.++|+.|+..+|+..+.|+.+++.++.+...
T Consensus 18 lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~~~~ 97 (213)
T 4f02_A 18 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPS 97 (213)
T ss_dssp EEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCTH
T ss_pred EEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccccccc
Confidence 89999999998 999999999999999998 7899999999999999999999999999999999999998875542
Q ss_pred --CCCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 77 --SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 77 --~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
.....+|||+|||..+|+++|+++|++||.|..++|++|..+ .++.|||+|.+.|+|.
T Consensus 98 ~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~-~~g~~fV~f~~~~~a~ 157 (213)
T 4f02_A 98 LRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAE 157 (213)
T ss_dssp HHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTE-EEEEEEEEESSHHHHH
T ss_pred ccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCC-CceEEEEEeCCHHHHH
Confidence 234578999999999999999999999999999999998754 4577999999999875
No 6
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.98 E-value=5.7e-32 Score=176.24 Aligned_cols=134 Identities=18% Similarity=0.316 Sum_probs=118.5
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCC--CceeeEEEEcCCHHHHHHHHHHHcCceeC---CceEEEEee
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STA--QSLGYGFVNYHRPEDAEKAINTLNGLRLQ---NKTIKVSYA 71 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~--~~kg~~fv~f~~~~~a~~a~~~~~~~~~~---g~~l~v~~~ 71 (136)
|||+|||..++ |+++|++||+|.++.+++ .++ +++|||||+|.+.++|+.|+..+||..+. ++++.+.++
T Consensus 6 l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~~~ 85 (175)
T 3nmr_A 6 MFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPA 85 (175)
T ss_dssp EEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEEC
T ss_pred EEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEEccc
Confidence 79999999998 999999999999999998 444 89999999999999999999999998776 678888877
Q ss_pred CCCCC-CCCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 72 RPSSE-SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 72 ~~~~~-~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
.+... ....++|||+|||..+|+++|+++|++||.|..+.+++++.+...+.|||+|.+.|+|.
T Consensus 86 ~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~ 150 (175)
T 3nmr_A 86 DSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQ 150 (175)
T ss_dssp GGGCCSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHH
T ss_pred cccccccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHH
Confidence 65543 33678999999999999999999999999999999999986444567999999999875
No 7
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.98 E-value=5.8e-32 Score=181.70 Aligned_cols=134 Identities=19% Similarity=0.331 Sum_probs=120.7
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~ 76 (136)
|||+|||..++ |+++|++||+|.++.+++ .+++++|||||+|.+.++|+.|+..+||..+.|+.|.+.++.+...
T Consensus 31 l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~~~ 110 (216)
T 2qfj_A 31 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQ 110 (216)
T ss_dssp EEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSCCGG
T ss_pred EEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCCccc
Confidence 89999999998 999999999999999988 5899999999999999999999999999999999999988776542
Q ss_pred -----------CCCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCc-cceEeecCcccccc
Q psy6353 77 -----------SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATEN-GKYYSGLGGRERLR 135 (136)
Q Consensus 77 -----------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~-~~~fv~f~~~e~~~ 135 (136)
.....+|||+|||..+++++|+++|++||.|..+.+++++.++.. +.+||+|.+.|+|.
T Consensus 111 ~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~ 181 (216)
T 2qfj_A 111 AQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQ 181 (216)
T ss_dssp GHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHH
T ss_pred cchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHH
Confidence 235689999999999999999999999999999999999888776 56999999999875
No 8
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.98 E-value=4.8e-33 Score=180.35 Aligned_cols=132 Identities=21% Similarity=0.375 Sum_probs=121.3
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~ 76 (136)
|||+|||..++ |+++|++||+|.++.+++ .+|.++|||||+|.+.++|+.|+.. +..+.|+.+.+.++.+...
T Consensus 6 l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~~~~~ 83 (167)
T 2cjk_A 6 MFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAIPRDE 83 (167)
T ss_dssp EEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECCCHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccccccchhh
Confidence 79999999999 999999999999999988 6899999999999999999999994 6789999999999887766
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCc-cceEeecCcccccc
Q psy6353 77 SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATEN-GKYYSGLGGRERLR 135 (136)
Q Consensus 77 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~-~~~fv~f~~~e~~~ 135 (136)
.....+|||+|||.++++++|+++|++||.|..+.++.++.+|.+ +.|||+|.+.|+|.
T Consensus 84 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~ 143 (167)
T 2cjk_A 84 QDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVD 143 (167)
T ss_dssp HHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHH
T ss_pred ccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHH
Confidence 667789999999999999999999999999999999999877776 55999999999875
No 9
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.97 E-value=1.1e-31 Score=179.97 Aligned_cols=130 Identities=11% Similarity=0.128 Sum_probs=113.3
Q ss_pred eeecCCC-hhhh---HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCC-
Q psy6353 2 VYQTLLN-KLFT---YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE- 76 (136)
Q Consensus 2 v~v~nl~-~~~~---l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~- 76 (136)
|||+||| ..++ |+++|++||.|.++++++ .++|||||+|.+.++|+.|++.|||..+.|++|.|.++.....
T Consensus 7 l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~---~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~~~ 83 (205)
T 3tyt_A 7 LMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMK---SKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPAIM 83 (205)
T ss_dssp EEEECCCTTTCCHHHHHHHHTTTSCEEEEEECT---TSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSCCC
T ss_pred EEEeCCCcccCCHHHHHHHHHhcCCeEEEEEec---CCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCCccC
Confidence 8999999 7888 999999999999999986 3579999999999999999999999999999999998753210
Q ss_pred ------------------------------------CCCCceEEEcCCCCCCCHHHHHHhhcCCCce--EEEEEEeCCCC
Q psy6353 77 ------------------------------------SIKGANLYVSGLPKHMSQQELESLFSPYGRI--ITSRILCDNLA 118 (136)
Q Consensus 77 ------------------------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v--~~~~i~~~~~~ 118 (136)
..+..+|||+|||.++|+++|+++|++||.| ..+++..+. +
T Consensus 84 p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~-~ 162 (205)
T 3tyt_A 84 PGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK-S 162 (205)
T ss_dssp CCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC-S
T ss_pred CCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC-C
Confidence 0124579999999999999999999999999 899998876 4
Q ss_pred CCccceEeecCcccccc
Q psy6353 119 TENGKYYSGLGGRERLR 135 (136)
Q Consensus 119 ~~~~~~fv~f~~~e~~~ 135 (136)
+.++.|||+|.+.|+|.
T Consensus 163 ~~~g~gfV~f~~~~~A~ 179 (205)
T 3tyt_A 163 ERSSSGLLEWDSKSDAL 179 (205)
T ss_dssp SSSEEEEEECSSHHHHH
T ss_pred CCceEEEEEeCCHHHHH
Confidence 44578999999999874
No 10
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.97 E-value=1.1e-30 Score=169.93 Aligned_cols=129 Identities=12% Similarity=0.259 Sum_probs=116.9
Q ss_pred eeecCCChhhh---HHHHhccC----C-------CeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEE
Q psy6353 2 VYQTLLNKLFT---YEKVHLGF----S-------DAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIK 67 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~----G-------~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~ 67 (136)
|||+|||..++ |+++|++| | .|.++.+. .++|||||+|.+.++|++|+ ++||..+.|+++.
T Consensus 7 l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~----~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~ 81 (172)
T 2g4b_A 7 LYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN----QDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLK 81 (172)
T ss_dssp EEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE----TTTTEEEEEESSHHHHHHHG-GGTTCEETTEECE
T ss_pred EEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec----CCCCEEEEEeCCHHHHHHHH-HhCCcEecCceee
Confidence 79999999999 99999999 6 66666554 47899999999999999999 7999999999999
Q ss_pred EEeeCCCCCCCCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCc-cceEeecCcccccc
Q psy6353 68 VSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATEN-GKYYSGLGGRERLR 135 (136)
Q Consensus 68 v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~-~~~fv~f~~~e~~~ 135 (136)
+.++.+........+|||+|||..+++++|+++|++||.|..+.+++++.+|.+ +.|||+|.+.|+|.
T Consensus 82 v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~ 150 (172)
T 2g4b_A 82 IRRPHDYQPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTD 150 (172)
T ss_dssp EECCSSCCCCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHH
T ss_pred ecCCcccCCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHH
Confidence 999887776677899999999999999999999999999999999999877776 55999999999875
No 11
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=5.5e-30 Score=178.74 Aligned_cols=134 Identities=22% Similarity=0.301 Sum_probs=122.1
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~ 76 (136)
|||+|||..++ |+++|++||.|.++.++. .+|.++|||||+|.+.++|..|+..+||..+.|++|.+.++.+...
T Consensus 98 l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~ 177 (284)
T 3smz_A 98 LCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQL 177 (284)
T ss_dssp EEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGGC
T ss_pred EEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCC
Confidence 79999999998 999999999999999887 6899999999999999999999999999999999999999886553
Q ss_pred ---CCCCceEEEcCCCCCC-CHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 77 ---SIKGANLYVSGLPKHM-SQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 77 ---~~~~~~l~v~nl~~~~-t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
.....+|||+|||.++ ++++|+++|++||.|..+.++.++.+...+.|||+|.+.|+|.
T Consensus 178 ~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~ 240 (284)
T 3smz_A 178 TPALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAE 240 (284)
T ss_dssp CTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHH
T ss_pred CcccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHH
Confidence 3467899999999995 9999999999999999999999985555577999999999874
No 12
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.97 E-value=1.3e-29 Score=175.41 Aligned_cols=124 Identities=22% Similarity=0.390 Sum_probs=114.1
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESI 78 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~~~ 78 (136)
|||+|||..+| |+++|++||.|.++.+.+ ++|||||+|.+.++|+.|+..+||..+.|++|.|.++.+
T Consensus 25 l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~----~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~----- 95 (261)
T 3sde_A 25 LFVGNLPTDITEEDFKRLFERYGEPSEVFINR----DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH----- 95 (261)
T ss_dssp EEEESCCTTCCHHHHHHHTGGGCCCSEEEEET----TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC-----
T ss_pred EEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC----CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc-----
Confidence 79999999998 999999999999999865 689999999999999999999999999999999999874
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 79 KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 79 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
+.+|||+|||..+|+++|+++|++||.|..+.++.+..+...+.|||+|.+.++|.
T Consensus 96 -~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~ 151 (261)
T 3sde_A 96 -GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPAR 151 (261)
T ss_dssp -SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHH
T ss_pred -CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHH
Confidence 47899999999999999999999999999999999964444467999999999874
No 13
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.96 E-value=5.6e-30 Score=179.33 Aligned_cols=134 Identities=16% Similarity=0.273 Sum_probs=115.4
Q ss_pred eeecCCChhhh---HHHHhccCC-CeeEEEEEc-cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFS-DAEICVFLI-STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G-~v~~~~~~~-~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~ 76 (136)
|||+|||..++ |+++|++|| .|.++.++. ..|.++|||||+|.+.++|..|+..+||..+.|++|.|.++.+...
T Consensus 120 l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 199 (292)
T 2ghp_A 120 LWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEK 199 (292)
T ss_dssp EEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC--
T ss_pred EEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCcc
Confidence 79999999998 999999999 999999998 6688999999999999999999999999999999999999887654
Q ss_pred C-------CCCceEEEcCCCCC-CCHHHHHHhhcCCCceEEEEEEeCCC--CCCccceEeecCcccccc
Q psy6353 77 S-------IKGANLYVSGLPKH-MSQQELESLFSPYGRIITSRILCDNL--ATENGKYYSGLGGRERLR 135 (136)
Q Consensus 77 ~-------~~~~~l~v~nl~~~-~t~~~l~~~f~~~G~v~~~~i~~~~~--~~~~~~~fv~f~~~e~~~ 135 (136)
. ....+|||+|||.. +++++|+++|++||.|..+.++++.. +...+.|||+|.+.|+|.
T Consensus 200 ~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~ 268 (292)
T 2ghp_A 200 SKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAE 268 (292)
T ss_dssp -------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHH
T ss_pred cccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHH
Confidence 3 34589999999999 99999999999999999999999887 444466999999999875
No 14
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.96 E-value=6.8e-29 Score=173.07 Aligned_cols=129 Identities=16% Similarity=0.321 Sum_probs=114.4
Q ss_pred eeecCCChhhh---HH----HHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCC
Q psy6353 2 VYQTLLNKLFT---YE----KVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPS 74 (136)
Q Consensus 2 v~v~nl~~~~~---l~----~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~ 74 (136)
|||+|||..++ |+ ++|++||.|.+|.+++ +++++|||||+|.+.++|+.|+..+||..+.|+.|+|.++.+.
T Consensus 12 l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 90 (282)
T 3pgw_A 12 IYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR-SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTD 90 (282)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC-CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEEeccC
Confidence 89999999998 55 7999999999998875 7889999999999999999999999999999999999987654
Q ss_pred CC------------------------------------------------------------------------------
Q psy6353 75 SE------------------------------------------------------------------------------ 76 (136)
Q Consensus 75 ~~------------------------------------------------------------------------------ 76 (136)
..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~p~~~ 170 (282)
T 3pgw_A 91 SDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMI 170 (282)
T ss_pred cchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCCCCCCCC
Confidence 32
Q ss_pred ---------------------------------CCCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccc
Q psy6353 77 ---------------------------------SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGK 123 (136)
Q Consensus 77 ---------------------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~ 123 (136)
....++|||+|||..+++++|+++|++||.|..++++.+. ++.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~----~g~ 246 (282)
T 3pgw_A 171 PPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR----HDI 246 (282)
T ss_pred CCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC----CcE
Confidence 1134679999999999999999999999999999999654 468
Q ss_pred eEeecCcccccc
Q psy6353 124 YYSGLGGRERLR 135 (136)
Q Consensus 124 ~fv~f~~~e~~~ 135 (136)
+||+|.+.|+|.
T Consensus 247 afV~f~~~~~A~ 258 (282)
T 3pgw_A 247 AFVEFDNEVQAG 258 (282)
T ss_pred EEEEeCCHHHHH
Confidence 999999999874
No 15
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.96 E-value=7.3e-29 Score=164.58 Aligned_cols=129 Identities=12% Similarity=0.268 Sum_probs=112.4
Q ss_pred eeecCCChhhh---HHHHhccCC-----------CeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEE
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFS-----------DAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIK 67 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G-----------~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~ 67 (136)
|||+|||..++ |+++|++|| .|.++.+ ++++|||||+|.+.++|++|+ ++||..+.|++|.
T Consensus 7 l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~----~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i~ 81 (198)
T 2yh0_A 7 LYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI----NQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLK 81 (198)
T ss_dssp EEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE----ETTTTEEEEEESCSHHHHHHG-GGTTEEETTEEEE
T ss_pred EEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe----cCCCCEEEEEeCCHHHHHHHH-HhcCCEEcCceEE
Confidence 79999999998 999999994 4555544 457899999999999999999 7999999999999
Q ss_pred EEeeCCCCC--------------------CCCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCc-cceEe
Q psy6353 68 VSYARPSSE--------------------SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATEN-GKYYS 126 (136)
Q Consensus 68 v~~~~~~~~--------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~-~~~fv 126 (136)
|.++.+... ....++|||+|||..+++++|+++|++||.|..+.+++++.++.. +.+||
T Consensus 82 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV 161 (198)
T 2yh0_A 82 IRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFC 161 (198)
T ss_dssp EECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEE
T ss_pred EeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEE
Confidence 998765421 135689999999999999999999999999999999999877765 56999
Q ss_pred ecCcccccc
Q psy6353 127 GLGGRERLR 135 (136)
Q Consensus 127 ~f~~~e~~~ 135 (136)
+|.+.|+|.
T Consensus 162 ~f~~~~~a~ 170 (198)
T 2yh0_A 162 EYVDINVTD 170 (198)
T ss_dssp EESSSSHHH
T ss_pred EECCHHHHH
Confidence 999999875
No 16
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.96 E-value=2.6e-28 Score=170.27 Aligned_cols=123 Identities=22% Similarity=0.346 Sum_probs=113.3
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESI 78 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~~~ 78 (136)
|||+|||..++ |+++|++|| |.++.+ ++++|||||+|.+.++|+.|+..+||..+.|+++.+.++.
T Consensus 25 l~V~nLp~~~te~~l~~~F~~~G-i~~~~~----~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~------ 93 (284)
T 3smz_A 25 ILIRGLPGDVTNQEVHDLLSDYE-LKYCFV----DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP------ 93 (284)
T ss_dssp EEEECCCTTCCHHHHHHHTTTSC-EEEEEE----ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC------
T ss_pred EEEeCCCCCCCHHHHHHHHHHcC-CEEEEE----ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC------
Confidence 89999999998 999999999 888877 4688999999999999999999999999999999999865
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCc-cceEeecCcccccc
Q psy6353 79 KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATEN-GKYYSGLGGRERLR 135 (136)
Q Consensus 79 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~-~~~fv~f~~~e~~~ 135 (136)
..++|||+|||..+|+++|+++|++||.|..+.++.++.+|.+ +.+||+|.+.|+|.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~ 151 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAA 151 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHH
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHH
Confidence 4478999999999999999999999999999999999888877 45999999999874
No 17
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.96 E-value=1.1e-29 Score=165.78 Aligned_cols=129 Identities=18% Similarity=0.242 Sum_probs=110.0
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc-cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCC-
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI-STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE- 76 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~-~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~- 76 (136)
|||+|||..++ |+++|++||.+..+.+.. .+++++|||||+|.+.++|+.|++ +||..+.|++|.+.++.+...
T Consensus 16 l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~~~~~~~~ 94 (175)
T 1fje_B 16 LFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKGRDSK 94 (175)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEECCCCSSCS
T ss_pred EEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEecCCCcccc
Confidence 79999999998 888999999876633333 778899999999999999999995 999999999999999886543
Q ss_pred -CCCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 77 -SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 77 -~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
....++|||+|||..+++++|+++|++||.|..+ ...+..++.|||+|.+.|+|.
T Consensus 95 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~A~ 150 (175)
T 1fje_B 95 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAE 150 (175)
T ss_dssp TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE----CSSSSCCSEEEEECSSHHHHH
T ss_pred ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe----cCCCCCceEEEEEECCHHHHH
Confidence 3456899999999999999999999999988766 333344467999999999875
No 18
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.95 E-value=4.4e-28 Score=164.75 Aligned_cols=127 Identities=20% Similarity=0.275 Sum_probs=111.7
Q ss_pred eeecCCCh-hhh---HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCC-
Q psy6353 2 VYQTLLNK-LFT---YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE- 76 (136)
Q Consensus 2 v~v~nl~~-~~~---l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~- 76 (136)
|||+|||. .++ |+++|++||.|.++.+++ ..+|||||+|.+.++|+.|++.+||..+.|++|.|.++.+...
T Consensus 37 l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~---~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~~~ 113 (229)
T 2adc_A 37 LLVSNLNPERVTPQSLFILFGVYGDVQRVKILF---NKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQ 113 (229)
T ss_dssp EEEESCCTTTCCHHHHHHHHHHHTCEEEEEECC---TTSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCCCCC
T ss_pred EEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEE---CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCcccc
Confidence 89999999 888 999999999999999987 2279999999999999999999999999999999998875410
Q ss_pred ----------------------------------CCCCceEEEcCCCCCCCHHHHHHhhcCCC-ceEEEEEEeCCCCCCc
Q psy6353 77 ----------------------------------SIKGANLYVSGLPKHMSQQELESLFSPYG-RIITSRILCDNLATEN 121 (136)
Q Consensus 77 ----------------------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G-~v~~~~i~~~~~~~~~ 121 (136)
.....+|||+|||..+++++|+++|++|| .|..+.+..+ .+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~----~~ 189 (229)
T 2adc_A 114 LPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK----DR 189 (229)
T ss_dssp CCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS----ST
T ss_pred CccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC----CC
Confidence 11257899999999999999999999999 9999999753 24
Q ss_pred cceEeecCcccccc
Q psy6353 122 GKYYSGLGGRERLR 135 (136)
Q Consensus 122 ~~~fv~f~~~e~~~ 135 (136)
+.+||+|.+.|+|.
T Consensus 190 g~afV~f~~~~~A~ 203 (229)
T 2adc_A 190 KMALIQMGSVEEAV 203 (229)
T ss_dssp TCEEEEESSHHHHH
T ss_pred cEEEEEECCHHHHH
Confidence 67999999999875
No 19
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.95 E-value=2.3e-28 Score=162.49 Aligned_cols=127 Identities=20% Similarity=0.274 Sum_probs=111.9
Q ss_pred eeecCCCh-hhh---HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCC-
Q psy6353 2 VYQTLLNK-LFT---YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE- 76 (136)
Q Consensus 2 v~v~nl~~-~~~---l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~- 76 (136)
|||+|||. .++ |+++|++||.|.++.+++ ..+|||||+|.+.++|+.|+..+||..+.|++|.|.++.+...
T Consensus 6 l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~---~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~~~ 82 (198)
T 1qm9_A 6 LLVSNLNPERVTPQSLFILFGVYGDVQRVKILF---NKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQ 82 (198)
T ss_dssp EEEECCCSSSCCHHHHHHHHHTTCCCSEEECST---TCSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCSCC
T ss_pred EEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEe---CCCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCCcC
Confidence 79999999 888 999999999999999876 2379999999999999999999999999999999998875421
Q ss_pred ----------------------------------CCCCceEEEcCCCCCCCHHHHHHhhcCCC-ceEEEEEEeCCCCCCc
Q psy6353 77 ----------------------------------SIKGANLYVSGLPKHMSQQELESLFSPYG-RIITSRILCDNLATEN 121 (136)
Q Consensus 77 ----------------------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G-~v~~~~i~~~~~~~~~ 121 (136)
..+..+|||+|||..+++++|+++|++|| .|..+.+.++. .
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~----~ 158 (198)
T 1qm9_A 83 LPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD----R 158 (198)
T ss_dssp CSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT----S
T ss_pred CCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC----C
Confidence 12367899999999999999999999999 99999997643 4
Q ss_pred cceEeecCcccccc
Q psy6353 122 GKYYSGLGGRERLR 135 (136)
Q Consensus 122 ~~~fv~f~~~e~~~ 135 (136)
+.+||+|.+.|+|.
T Consensus 159 g~afV~f~~~~~A~ 172 (198)
T 1qm9_A 159 KMALIQMGSVEEAV 172 (198)
T ss_dssp SCEEEECSSHHHHH
T ss_pred cEEEEEeCCHHHHH
Confidence 77999999999875
No 20
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.95 E-value=3e-28 Score=170.54 Aligned_cols=125 Identities=16% Similarity=0.165 Sum_probs=109.6
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc-cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI-STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSES 77 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~-~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~~ 77 (136)
|||+|||..++ |+++|++||+|.++.+++ ..+ ++|||||+|.+.++|+.|++ +||..+.|++|.+.++
T Consensus 44 l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~~~------ 115 (292)
T 2ghp_A 44 VLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK-NFRFARIEFARYDGALAAIT-KTHKVVGQNEIIVSHL------ 115 (292)
T ss_dssp EEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS-SSEEEEEEESSHHHHHHHHT-TTTCEETTEECEEEEC------
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC-CcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEEEC------
Confidence 89999999998 999999999999999998 433 68999999999999999995 9999999999999886
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhcCCC-ceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 78 IKGANLYVSGLPKHMSQQELESLFSPYG-RIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 78 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G-~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
..++|||+|||..+++++|+++|++|| .|..+.++.+..+...+.|||+|.+.|+|.
T Consensus 116 -~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~ 173 (292)
T 2ghp_A 116 -TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDAR 173 (292)
T ss_dssp -CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHH
T ss_pred -CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHH
Confidence 468899999999999999999999999 999999999987656677999999999875
No 21
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.93 E-value=1.8e-25 Score=137.10 Aligned_cols=95 Identities=23% Similarity=0.421 Sum_probs=69.5
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCCC-
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSES- 77 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~~- 77 (136)
|||+|||..++ |+++|++||+|.++++++..+.++|||||+|.+.++|++|+..|||..+.|++|.|.++.++...
T Consensus 8 lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~~~~ 87 (115)
T 4f25_A 8 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE 87 (115)
T ss_dssp EEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCCCC--
T ss_pred EEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCccccc
Confidence 79999999998 99999999999999999855568999999999999999999999999999999999998775532
Q ss_pred -------CCCceEEEcCCCCCCCHHH
Q psy6353 78 -------IKGANLYVSGLPKHMSQQE 96 (136)
Q Consensus 78 -------~~~~~l~v~nl~~~~t~~~ 96 (136)
....+|||+|||+++|++.
T Consensus 88 ~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 88 AELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp --------------------------
T ss_pred cccccccCCCCceEeCCCCCCccccc
Confidence 2345799999999999874
No 22
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.89 E-value=9.2e-23 Score=121.90 Aligned_cols=73 Identities=51% Similarity=0.746 Sum_probs=69.9
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPS 74 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~ 74 (136)
|||+|||..+| |+++|++||+|.++.+++ .+|+++|||||+|.+.++|++|+..|||..+.|++|+|.+++|.
T Consensus 22 lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~AkPS 99 (99)
T 4fxv_A 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPS 99 (99)
T ss_dssp EEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCBC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEeeCC
Confidence 89999999999 999999999999999998 78999999999999999999999999999999999999999873
No 23
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.85 E-value=1.1e-20 Score=114.91 Aligned_cols=73 Identities=16% Similarity=0.209 Sum_probs=69.3
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPS 74 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~ 74 (136)
|||+|||..++ |+++|++||+|.++.+++ .+++++|||||+|.+.++|++|+..|||..+.|+.|+|.++...
T Consensus 9 lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~~~ 86 (110)
T 3s8s_A 9 VTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDIKG 86 (110)
T ss_dssp EEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSTT
T ss_pred EEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 89999999998 999999999999999998 67999999999999999999999999999999999999998654
No 24
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.84 E-value=1.9e-20 Score=108.15 Aligned_cols=74 Identities=22% Similarity=0.411 Sum_probs=70.3
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSS 75 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~ 75 (136)
|||+|||..++ |+++|++||+|.++.+++ .+++++|||||+|.+.++|+.|+..+||..+.|++|+|.++.++.
T Consensus 4 l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 82 (83)
T 3md1_A 4 LFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKLE 82 (83)
T ss_dssp EEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcCC
Confidence 79999999998 999999999999999988 689999999999999999999999999999999999999998764
No 25
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.84 E-value=6.4e-21 Score=122.59 Aligned_cols=110 Identities=16% Similarity=0.157 Sum_probs=83.9
Q ss_pred EEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeC-------CceEEEEeeCC------CCCCCCCceEEEcCCCCCC
Q psy6353 26 CVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQ-------NKTIKVSYARP------SSESIKGANLYVSGLPKHM 92 (136)
Q Consensus 26 ~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~-------g~~l~v~~~~~------~~~~~~~~~l~v~nl~~~~ 92 (136)
+.++.....++|||||+|.+.++|++|+..+++.... +.......... ........+|||+|||.++
T Consensus 3 ~kl~ln~~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~ 82 (158)
T 2kn4_A 3 YKLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTYRT 82 (158)
T ss_dssp EEEEEECSSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCTTC
T ss_pred EEEEecCccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCCCC
Confidence 4555544579999999999999999999887753222 22222222111 1122346899999999999
Q ss_pred CHHHHHHhhcCCCceEEEEEEeCCCCCCc-cceEeecCcccccc
Q psy6353 93 SQQELESLFSPYGRIITSRILCDNLATEN-GKYYSGLGGRERLR 135 (136)
Q Consensus 93 t~~~l~~~f~~~G~v~~~~i~~~~~~~~~-~~~fv~f~~~e~~~ 135 (136)
++++|+++|++||.|..+.+++|+.+|.+ +.|||+|.+.|+|.
T Consensus 83 ~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~ 126 (158)
T 2kn4_A 83 SPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAE 126 (158)
T ss_dssp CHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHH
T ss_pred CHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHH
Confidence 99999999999999999999999877776 55999999999874
No 26
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.84 E-value=1.6e-21 Score=114.80 Aligned_cols=76 Identities=20% Similarity=0.333 Sum_probs=69.8
Q ss_pred eeecCCChhhh---HHHHhccCC-CeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHH-cCceeCCceEEEEeeCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFS-DAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTL-NGLRLQNKTIKVSYARPS 74 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G-~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~-~~~~~~g~~l~v~~~~~~ 74 (136)
|||+|||..+| |+++|++|| +|.++++++ .+|+++|||||+|.+.++|++|++.+ |+..++|++|+|.++.|+
T Consensus 4 i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~~~ 83 (91)
T 2lxi_A 4 VMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSDPK 83 (91)
T ss_dssp EEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCCSC
T ss_pred EEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcCCC
Confidence 79999999999 999999999 899999988 78999999999999999999999977 457899999999999987
Q ss_pred CCC
Q psy6353 75 SES 77 (136)
Q Consensus 75 ~~~ 77 (136)
++.
T Consensus 84 ~~~ 86 (91)
T 2lxi_A 84 PKI 86 (91)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 27
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.83 E-value=1.5e-21 Score=119.46 Aligned_cols=96 Identities=20% Similarity=0.264 Sum_probs=86.5
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESI 78 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~~~ 78 (136)
|||+|||..++ |+++|++||.|.++.++. ++.++|||||+|.+.++|+.|+..|||..+.|+.|.|.++.+....
T Consensus 11 l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~- 88 (115)
T 3lqv_A 11 LYIRNLPYKITAEEMYDIFGKYGPIRQIRVGN-TPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNANRAF- 88 (115)
T ss_dssp EEEESCCTTCCHHHHHHHHHTTSCEEEEEEEC-STTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHHHHT-
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeEEEEEee-CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCChhh-
Confidence 89999999998 999999999999999885 4566999999999999999999999999999999999999865432
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhcCCCc
Q psy6353 79 KGANLYVSGLPKHMSQQELESLFSPYGR 106 (136)
Q Consensus 79 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~ 106 (136)
.+++...+++++.++|++||.
T Consensus 89 -------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 89 -------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp -------TTSCHHHHHHHHHHHHHHHCC
T ss_pred -------hhhhHhHhHHHHHHHHHHhCC
Confidence 677888899999999999984
No 28
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.83 E-value=3.3e-20 Score=108.02 Aligned_cols=73 Identities=27% Similarity=0.398 Sum_probs=68.4
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPS 74 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~ 74 (136)
|||+|||..++ |+++|++||.|.++.++. .+++++|||||+|.+.++|+.|+..+||..+.|++|+|.++.++
T Consensus 9 l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~k 86 (87)
T 3bs9_A 9 VFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 86 (87)
T ss_dssp EEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC--
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecCCC
Confidence 79999999998 999999999999999988 68999999999999999999999999999999999999999875
No 29
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.83 E-value=6.9e-21 Score=111.77 Aligned_cols=75 Identities=17% Similarity=0.174 Sum_probs=66.4
Q ss_pred eeecCCChhhh---HHHHhccCC--CeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFS--DAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPS 74 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G--~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~ 74 (136)
|||+|||..++ |+++|++|| .|.++.++. .+|+++|||||+|.+.++|++|++.|||..+.|+.|+|.++.+.
T Consensus 4 l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~~~ 83 (90)
T 3p5t_L 4 LYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSNKL 83 (90)
T ss_dssp CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC---
T ss_pred EEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECCCC
Confidence 79999999998 999999999 999999988 68999999999999999999999999999999999999998876
Q ss_pred CC
Q psy6353 75 SE 76 (136)
Q Consensus 75 ~~ 76 (136)
..
T Consensus 84 ~~ 85 (90)
T 3p5t_L 84 EH 85 (90)
T ss_dssp --
T ss_pred cc
Confidence 43
No 30
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.83 E-value=1.3e-20 Score=111.62 Aligned_cols=72 Identities=19% Similarity=0.309 Sum_probs=66.5
Q ss_pred eeecCCChhhh---HHHHhccCCC--eeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCc----eeCCceEEEEe
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSD--AEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGL----RLQNKTIKVSY 70 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~--v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~----~~~g~~l~v~~ 70 (136)
|||+|||..+| |+++|++||. +.+|++++ .+|+++|||||+|.+.++|++|++.+||. .+.||+|.|.+
T Consensus 12 lfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V~~ 91 (95)
T 2lkz_A 12 IILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGVDF 91 (95)
T ss_dssp EEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEEEE
T ss_pred EEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEEEE
Confidence 79999999999 9999999995 67899888 78999999999999999999999999985 58999999999
Q ss_pred eCC
Q psy6353 71 ARP 73 (136)
Q Consensus 71 ~~~ 73 (136)
+++
T Consensus 92 Aks 94 (95)
T 2lkz_A 92 AKS 94 (95)
T ss_dssp CCC
T ss_pred ccC
Confidence 875
No 31
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=1e-19 Score=108.60 Aligned_cols=75 Identities=16% Similarity=0.318 Sum_probs=71.2
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc-cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI-STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~-~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~ 76 (136)
|||+|||..++ |+++|++||+|.++.++. .+++++|||||+|.+.++|+.|+..|||..+.|++|+|.++.++..
T Consensus 20 l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 98 (100)
T 2do4_A 20 LFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISNSGPS 98 (100)
T ss_dssp EEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECCCCSC
T ss_pred EEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCCCC
Confidence 89999999998 999999999999999998 8899999999999999999999999999999999999999988754
No 32
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.82 E-value=1.3e-20 Score=112.68 Aligned_cols=73 Identities=18% Similarity=0.172 Sum_probs=68.7
Q ss_pred eeecCCCh------hhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCC-ceEEEE
Q psy6353 2 VYQTLLNK------LFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQN-KTIKVS 69 (136)
Q Consensus 2 v~v~nl~~------~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g-~~l~v~ 69 (136)
|||+|||. .++ |+++|++||+|.++.+++ .+|+++|||||+|.+.++|++|+..|||..+.| ++|+|.
T Consensus 9 vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l~V~ 88 (100)
T 3ns6_A 9 IVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRLFLY 88 (100)
T ss_dssp EEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEE
T ss_pred EEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEEEEE
Confidence 89999999 887 999999999999999998 679999999999999999999999999999999 999999
Q ss_pred eeCCC
Q psy6353 70 YARPS 74 (136)
Q Consensus 70 ~~~~~ 74 (136)
++.|.
T Consensus 89 ~a~~~ 93 (100)
T 3ns6_A 89 TMKDV 93 (100)
T ss_dssp ESHHH
T ss_pred ECchh
Confidence 88754
No 33
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.2e-19 Score=108.86 Aligned_cols=76 Identities=28% Similarity=0.464 Sum_probs=71.5
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~ 76 (136)
|||+|||..++ |+++|++||+|.++.++. .+++++|||||+|.+.++|++|+..|||..+.|+.|+|.++.++..
T Consensus 18 l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 97 (103)
T 2cq0_A 18 IRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKPSTN 97 (103)
T ss_dssp EEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSCCCC
T ss_pred EEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEECCCCCC
Confidence 89999999998 999999999999999988 6899999999999999999999999999999999999999988765
Q ss_pred C
Q psy6353 77 S 77 (136)
Q Consensus 77 ~ 77 (136)
.
T Consensus 98 ~ 98 (103)
T 2cq0_A 98 S 98 (103)
T ss_dssp S
T ss_pred C
Confidence 3
No 34
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=1.6e-19 Score=106.75 Aligned_cols=76 Identities=25% Similarity=0.447 Sum_probs=71.5
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~ 76 (136)
|||+|||..++ |+++|++||+|.++.+++ .+++++|||||+|.+.++|+.|+..+||..+.|++|+|.++.++..
T Consensus 8 l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 87 (95)
T 2dnz_A 8 LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERLD 87 (95)
T ss_dssp EEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESSCCCC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcccccC
Confidence 79999999998 999999999999999998 6799999999999999999999999999999999999999988765
Q ss_pred C
Q psy6353 77 S 77 (136)
Q Consensus 77 ~ 77 (136)
.
T Consensus 88 ~ 88 (95)
T 2dnz_A 88 G 88 (95)
T ss_dssp C
T ss_pred C
Confidence 3
No 35
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=1.4e-19 Score=107.85 Aligned_cols=75 Identities=23% Similarity=0.320 Sum_probs=70.9
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~ 76 (136)
|||+|||..++ |+++|++||+|.++.++. .+++++|||||+|.+.++|+.|+..+||..+.|++|.|.++.++..
T Consensus 11 l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 90 (99)
T 1whw_A 11 LFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKKE 90 (99)
T ss_dssp EEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECCCCST
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCcc
Confidence 89999999998 999999999999999988 5899999999999999999999999999999999999999988765
No 36
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.81 E-value=1.1e-19 Score=107.76 Aligned_cols=75 Identities=23% Similarity=0.332 Sum_probs=70.5
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~ 76 (136)
|||+|||..++ |+++|++||.|.++.++. .+|+++|||||+|.+.++|+.|+..+||..+.|+.|.|.++.++..
T Consensus 5 l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 84 (96)
T 2x1f_A 5 VYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSNSDI 84 (96)
T ss_dssp EEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSSG
T ss_pred EEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCCCCC
Confidence 79999999998 999999999999999988 6799999999999999999999999999999999999999987653
No 37
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.81 E-value=3.4e-20 Score=110.93 Aligned_cols=85 Identities=20% Similarity=0.268 Sum_probs=75.5
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCCC-
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSES- 77 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~~- 77 (136)
|||+|||..++ |+++|++||+|.++.++.. ++|||||+|.+.++|+.|+..|||..+.|++|+|.++.++...
T Consensus 3 l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~ 79 (101)
T 2hvz_A 3 VYVGNLGTGAGKGELERAFSYYGPLRTVWIARN---PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRS 79 (101)
T ss_dssp EEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS---SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCSS
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCcc
Confidence 79999999998 9999999999999998863 7899999999999999999999999999999999998875532
Q ss_pred ---------CCCceEEEcCCC
Q psy6353 78 ---------IKGANLYVSGLP 89 (136)
Q Consensus 78 ---------~~~~~l~v~nl~ 89 (136)
....++||+||+
T Consensus 80 ~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 80 RFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp CCCSCCCSCCCCSCCCSCCCC
T ss_pred cCCCCCccccCCCceecCCCC
Confidence 125689999986
No 38
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.81 E-value=1.1e-19 Score=110.01 Aligned_cols=74 Identities=28% Similarity=0.472 Sum_probs=70.1
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSS 75 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~ 75 (136)
|||+|||..++ |+++|++||+|.++.+++ .+|+++|||||+|.+.++|+.|+..+||..+.|++|+|.++.++.
T Consensus 29 l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~k~ 107 (108)
T 2jrs_A 29 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERT 107 (108)
T ss_dssp EEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECSCSSC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcccCC
Confidence 79999999988 999999999999999988 678999999999999999999999999999999999999998764
No 39
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.81 E-value=7.8e-20 Score=105.61 Aligned_cols=66 Identities=20% Similarity=0.181 Sum_probs=63.1
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEee
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYA 71 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~ 71 (136)
|||+||+..+| |+++|.+||+|.++.+.. ++|||||+|.+.++|++|++.||+..+.|++|++..+
T Consensus 10 L~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~----~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 10 LLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL----NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp EEEECCCTTCCCHHHHHHHHHHSCEEEEEEET----TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred EEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC----CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 79999999999 999999999999999875 8999999999999999999999999999999999876
No 40
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.81 E-value=2.2e-19 Score=109.79 Aligned_cols=76 Identities=28% Similarity=0.482 Sum_probs=71.4
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~ 76 (136)
|||+|||..++ |+++|++||.|.++.++. .+++++|||||+|.+.++|+.|+..||+..+.|++|+|.++.++..
T Consensus 28 l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 107 (115)
T 2cpz_A 28 LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKND 107 (115)
T ss_dssp EEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCCCSCC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcCCCCc
Confidence 89999999998 999999999999999998 5899999999999999999999999999999999999999987754
Q ss_pred C
Q psy6353 77 S 77 (136)
Q Consensus 77 ~ 77 (136)
.
T Consensus 108 ~ 108 (115)
T 2cpz_A 108 S 108 (115)
T ss_dssp C
T ss_pred C
Confidence 3
No 41
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.81 E-value=1e-19 Score=105.44 Aligned_cols=71 Identities=27% Similarity=0.413 Sum_probs=67.3
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR 72 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~ 72 (136)
|||+|||..++ |+++|++||+|.++.+++ .+++++|||||+|.+.++|+.|+..+||..+.|++|+|.+++
T Consensus 10 l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ak 85 (85)
T 3mdf_A 10 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 85 (85)
T ss_dssp EEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred EEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 79999999998 999999999999999888 788899999999999999999999999999999999999874
No 42
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.81 E-value=4.8e-20 Score=117.67 Aligned_cols=100 Identities=16% Similarity=0.167 Sum_probs=86.9
Q ss_pred cCCCceeeEEEEcCCHHHHHHHHHHH-cCceeCCceEEEEeeCCC----------------CCCCCCceEEEcCCCCCCC
Q psy6353 31 STAQSLGYGFVNYHRPEDAEKAINTL-NGLRLQNKTIKVSYARPS----------------SESIKGANLYVSGLPKHMS 93 (136)
Q Consensus 31 ~~~~~kg~~fv~f~~~~~a~~a~~~~-~~~~~~g~~l~v~~~~~~----------------~~~~~~~~l~v~nl~~~~t 93 (136)
.....+|+++++|.+.++|++|+.++ ||..+.| .+.+.++.+. ......++|||+|||.++|
T Consensus 8 ~g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t 86 (150)
T 2i2y_A 8 NGKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGN 86 (150)
T ss_dssp CCSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCS
T ss_pred ccccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCC
Confidence 34456899999999999999999999 9999999 9999876541 1234668999999999999
Q ss_pred HHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 94 QQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 94 ~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
+++|+++|++||.|..+.++++ .++.|||+|.+.|++.
T Consensus 87 ~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~ 124 (150)
T 2i2y_A 87 KTELERAFGYYGPLRSVWVARN----PPGFAFVEFEDPRDAA 124 (150)
T ss_dssp CHHHHHHHHHHSCEEEEEECSS----SCSEEEEEESSHHHHH
T ss_pred HHHHHHHHHhhCCEEEEEEeeC----CCcEEEEEECCHHHHH
Confidence 9999999999999999999987 4578999999999874
No 43
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.81 E-value=1.8e-19 Score=105.89 Aligned_cols=75 Identities=25% Similarity=0.368 Sum_probs=70.5
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~ 76 (136)
|||+|||..++ |+++|++||+|..+.+++.+++++|||||+|.+.++|+.|+..|||..+.|++|+|.++.+...
T Consensus 11 l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~ 88 (92)
T 2dgv_A 11 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRNASG 88 (92)
T ss_dssp EEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSCCSS
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCCC
Confidence 79999999998 9999999999999998877888999999999999999999999999999999999999987654
No 44
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.4e-19 Score=109.02 Aligned_cols=74 Identities=20% Similarity=0.294 Sum_probs=69.9
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSS 75 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~ 75 (136)
|||+|||..++ |+++|++||+|.++.++. .+|+++|||||+|.+.++|+.|+..+||..+.|++|.|.++.++.
T Consensus 26 l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 104 (106)
T 1p27_B 26 LFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRG 104 (106)
T ss_dssp EEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEESEESS
T ss_pred EEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEeecCCC
Confidence 89999999998 999999999999999988 679999999999999999999999999999999999999987654
No 45
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.81 E-value=3.4e-19 Score=107.17 Aligned_cols=76 Identities=25% Similarity=0.416 Sum_probs=71.2
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc-cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCC---ceEEEEeeCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI-STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQN---KTIKVSYARPS 74 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~-~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g---~~l~v~~~~~~ 74 (136)
|||+|||..++ |+++|++||.|.++.++. .+++++|||||+|.+.++|+.|+..|||..+.| ++|.|.++.++
T Consensus 18 l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~a~~~ 97 (105)
T 2dnh_A 18 LFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTD 97 (105)
T ss_dssp EEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEESCSS
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEECccC
Confidence 89999999998 999999999999999999 789999999999999999999999999999988 99999999877
Q ss_pred CCC
Q psy6353 75 SES 77 (136)
Q Consensus 75 ~~~ 77 (136)
...
T Consensus 98 ~~~ 100 (105)
T 2dnh_A 98 KES 100 (105)
T ss_dssp CCC
T ss_pred ccc
Confidence 653
No 46
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.4e-19 Score=108.30 Aligned_cols=76 Identities=26% Similarity=0.401 Sum_probs=71.2
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~ 76 (136)
|||+|||..++ |+++|++||+|.++.++. .+++++|||||+|.+.++|+.|+..|||..+.|++|+|.++.++..
T Consensus 15 l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 94 (102)
T 2cqb_A 15 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKPMRI 94 (102)
T ss_dssp EEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECCCCCC
T ss_pred EEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeCCCCCC
Confidence 89999999988 999999999999999988 7789999999999999999999999999999999999999987764
Q ss_pred C
Q psy6353 77 S 77 (136)
Q Consensus 77 ~ 77 (136)
.
T Consensus 95 ~ 95 (102)
T 2cqb_A 95 K 95 (102)
T ss_dssp C
T ss_pred C
Confidence 3
No 47
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=2.9e-19 Score=106.46 Aligned_cols=75 Identities=15% Similarity=0.327 Sum_probs=70.3
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~ 76 (136)
|||+|||..++ |+++|++||+|.++.++. .+++++|||||+|.+.++|++|+. +|+..+.|++|.|.++.++..
T Consensus 13 l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a~~~~~ 91 (99)
T 2dgs_A 13 IFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRAEPRDS 91 (99)
T ss_dssp EEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEECCCCCC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEECCCCcc
Confidence 79999999998 999999999999999998 679999999999999999999999 999999999999999988765
Q ss_pred C
Q psy6353 77 S 77 (136)
Q Consensus 77 ~ 77 (136)
.
T Consensus 92 ~ 92 (99)
T 2dgs_A 92 K 92 (99)
T ss_dssp C
T ss_pred c
Confidence 3
No 48
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.80 E-value=3.9e-19 Score=108.63 Aligned_cols=75 Identities=27% Similarity=0.392 Sum_probs=70.9
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~ 76 (136)
|||+|||..++ |+++|++||.|.++.+++ .+++++|||||+|.+.++|+.|+..|||..+.|+.|.|.++.++..
T Consensus 18 l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 97 (115)
T 2dgo_A 18 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPP 97 (115)
T ss_dssp EEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSCCCC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccCCCC
Confidence 89999999998 999999999999999998 5899999999999999999999999999999999999999987654
No 49
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=2.4e-19 Score=106.59 Aligned_cols=76 Identities=25% Similarity=0.464 Sum_probs=70.0
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--c---CCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--S---TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARP 73 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~---~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~ 73 (136)
|||+|||..++ |+++|++||+|.++.++. . +++++|||||+|.+.++|+.|+..|||..+.|++|.|.++.+
T Consensus 8 l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 87 (98)
T 2cpf_A 8 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISER 87 (98)
T ss_dssp EEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEECSSC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEccC
Confidence 89999999998 999999999999999988 3 458999999999999999999999999999999999999987
Q ss_pred CCCC
Q psy6353 74 SSES 77 (136)
Q Consensus 74 ~~~~ 77 (136)
+...
T Consensus 88 ~~~~ 91 (98)
T 2cpf_A 88 ATKP 91 (98)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 6543
No 50
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.80 E-value=2.4e-19 Score=109.86 Aligned_cols=75 Identities=27% Similarity=0.402 Sum_probs=70.9
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc-cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI-STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~-~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~ 76 (136)
|||+|||..++ |+++|++||.|.++.++. .+++++|||||+|.+.++|+.|+..|||..+.|+.|+|.++.+...
T Consensus 10 l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 88 (116)
T 2fy1_A 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKKPSF 88 (116)
T ss_dssp EEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECCCSSC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCCCC
Confidence 79999999998 999999999999999999 8899999999999999999999999999999999999999987653
No 51
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.4e-19 Score=107.17 Aligned_cols=75 Identities=25% Similarity=0.367 Sum_probs=70.7
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEE-EEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEIC-VFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSS 75 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~-~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~ 75 (136)
|||+|||..++ |+++|++||+|.++ .+++ .+++++|||||+|.+.++|+.|+..+||..+.|++|+|.++.++.
T Consensus 8 l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 87 (96)
T 1x5t_A 8 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKD 87 (96)
T ss_dssp EEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESCCCC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEecccC
Confidence 79999999998 99999999999999 8888 789999999999999999999999999999999999999998765
Q ss_pred C
Q psy6353 76 E 76 (136)
Q Consensus 76 ~ 76 (136)
.
T Consensus 88 ~ 88 (96)
T 1x5t_A 88 S 88 (96)
T ss_dssp C
T ss_pred C
Confidence 4
No 52
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.3e-19 Score=105.35 Aligned_cols=72 Identities=22% Similarity=0.306 Sum_probs=68.1
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARP 73 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~ 73 (136)
|||+|||..++ |+++|++||+|..+.++. .+++++|||||+|.+.++|++|+..|||..+.|++|+|.++++
T Consensus 18 l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 94 (95)
T 2cqc_A 18 LGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGPSS 94 (95)
T ss_dssp EEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCSC
T ss_pred EEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEecCC
Confidence 89999999988 999999999999999988 6789999999999999999999999999999999999998864
No 53
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=4.2e-19 Score=106.47 Aligned_cols=76 Identities=26% Similarity=0.445 Sum_probs=71.0
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSES 77 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~~ 77 (136)
|||+|||..++ |+++|++||.|.++.++..+++++|||||+|.+.++|+.|+..|||..+.|++|.|.++.++...
T Consensus 18 l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 96 (103)
T 2d9p_A 18 LYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 96 (103)
T ss_dssp EEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECSSCCCC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEecccccC
Confidence 89999999998 99999999999999988777889999999999999999999999999999999999999877653
No 54
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.1e-19 Score=108.16 Aligned_cols=76 Identities=28% Similarity=0.365 Sum_probs=71.4
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~ 76 (136)
|||+|||..++ |+++|++||+|.++.++. .++.++|||||+|.+.++|+.|+..||+..+.|++|+|.++.++..
T Consensus 18 l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 97 (105)
T 1x5u_A 18 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKASAHNK 97 (105)
T ss_dssp EEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEETTTTSC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCCc
Confidence 79999999998 999999999999999988 5899999999999999999999999999999999999999987765
Q ss_pred C
Q psy6353 77 S 77 (136)
Q Consensus 77 ~ 77 (136)
.
T Consensus 98 ~ 98 (105)
T 1x5u_A 98 N 98 (105)
T ss_dssp C
T ss_pred C
Confidence 3
No 55
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.7e-19 Score=108.01 Aligned_cols=76 Identities=26% Similarity=0.409 Sum_probs=71.2
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~ 76 (136)
|||+|||..++ |+++|++||+|..+.++. .+++++|||||+|.+.++|+.|+..||+..+.|++|+|.++.++..
T Consensus 15 l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 94 (102)
T 1x5s_A 15 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSSD 94 (102)
T ss_dssp EEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEECCCC
T ss_pred EEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 89999999998 999999999999999988 6888999999999999999999999999999999999999987654
Q ss_pred C
Q psy6353 77 S 77 (136)
Q Consensus 77 ~ 77 (136)
.
T Consensus 95 ~ 95 (102)
T 1x5s_A 95 N 95 (102)
T ss_dssp C
T ss_pred C
Confidence 3
No 56
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=3.6e-19 Score=105.00 Aligned_cols=71 Identities=21% Similarity=0.293 Sum_probs=67.2
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR 72 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~ 72 (136)
|||+|||..++ |+++|++||+|.++.++. .+++++|||||+|.+.++|+.|+..|||..+.|++|+|.+++
T Consensus 19 l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ak 94 (94)
T 2e5h_A 19 VYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIAI 94 (94)
T ss_dssp EEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred EEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEecC
Confidence 89999999998 999999999999999988 668999999999999999999999999999999999999874
No 57
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=1.9e-19 Score=107.97 Aligned_cols=75 Identities=20% Similarity=0.298 Sum_probs=70.4
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~ 76 (136)
|||+|||..++ |+++|++||.|..+.++. .+++++|||||+|.+.++|++|+..|||..+.|++|.|.++.+...
T Consensus 16 l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 95 (103)
T 2dnm_A 16 LKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVARYGRR 95 (103)
T ss_dssp EEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEECSSCCS
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEECCcCCC
Confidence 89999999998 999999999999999988 6799999999999999999999999999999999999999987644
No 58
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.80 E-value=3.2e-19 Score=104.21 Aligned_cols=73 Identities=16% Similarity=0.290 Sum_probs=68.8
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSS 75 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~ 75 (136)
|||+|||..++ |+++|++||+|.++.++. .+++++|||||+|.+.++|++|+ .+||..+.|++|+|.++.+..
T Consensus 9 l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~~~ 86 (89)
T 3ucg_A 9 IYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRTNR 86 (89)
T ss_dssp EEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTTTS
T ss_pred EEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccCCC
Confidence 79999999998 999999999999999988 58999999999999999999999 899999999999999988753
No 59
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.80 E-value=3.5e-19 Score=105.29 Aligned_cols=72 Identities=25% Similarity=0.352 Sum_probs=68.1
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc-cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI-STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARP 73 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~-~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~ 73 (136)
|||+|||..++ |+++|++||+|.++.++. .+++++|||||+|.+.++|++|+..|||..+.|++|+|.+++.
T Consensus 19 l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 94 (95)
T 2ywk_A 19 VFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPSS 94 (95)
T ss_dssp EEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred EEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcCC
Confidence 79999999998 999999999999999998 6699999999999999999999999999999999999998763
No 60
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=5.9e-19 Score=105.83 Aligned_cols=76 Identities=22% Similarity=0.384 Sum_probs=69.5
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSES 77 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~~ 77 (136)
|||+|||..++ |+++|++||+|.++.+++..+.++|||||+|.+.++|++|+..||+..+.|++|+|.++.++...
T Consensus 18 l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 96 (103)
T 2cqi_A 18 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQ 96 (103)
T ss_dssp EEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCTTCC
T ss_pred EEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECCCCccc
Confidence 89999999998 99999999999999999844447999999999999999999999999999999999999876543
No 61
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.79 E-value=2.5e-19 Score=108.67 Aligned_cols=74 Identities=20% Similarity=0.318 Sum_probs=69.9
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSS 75 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~ 75 (136)
|||+|||..++ |+++|++||.|.++.++. .+|+++|||||+|.+.++|+.|+..|||..+.|++|.|.++.++.
T Consensus 29 l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 107 (110)
T 1oo0_B 29 LFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKG 107 (110)
T ss_dssp EEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEESS
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEcccCC
Confidence 89999999988 999999999999999988 689999999999999999999999999999999999999988664
No 62
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.1e-18 Score=104.62 Aligned_cols=75 Identities=20% Similarity=0.321 Sum_probs=69.1
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~ 76 (136)
|||+|||..++ |+++|++||+|.++.++...+.++|||||+|.+.++|+.|+..|||..+.|++|.|.++.++..
T Consensus 18 l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 95 (103)
T 2cq3_A 18 LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVM 95 (103)
T ss_dssp EEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCSSCC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcccCCC
Confidence 89999999998 9999999999999999983334899999999999999999999999999999999999987654
No 63
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.79 E-value=4.4e-19 Score=105.68 Aligned_cols=71 Identities=21% Similarity=0.278 Sum_probs=67.0
Q ss_pred eeecCCChhhh---HHHHhccCCCeeE--------EEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEE
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEI--------CVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKV 68 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~--------~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v 68 (136)
|||+|||..++ |+++|++||.|.+ +.++. .+|+++|||||+|.+.++|+.|++.|||..+.|++|+|
T Consensus 16 l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 95 (99)
T 2la6_A 16 IFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKV 95 (99)
T ss_dssp EEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred EEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 79999999998 9999999999999 98888 67999999999999999999999999999999999999
Q ss_pred EeeC
Q psy6353 69 SYAR 72 (136)
Q Consensus 69 ~~~~ 72 (136)
.+++
T Consensus 96 ~~A~ 99 (99)
T 2la6_A 96 SFAT 99 (99)
T ss_dssp EECC
T ss_pred EecC
Confidence 8863
No 64
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.79 E-value=6.5e-19 Score=106.30 Aligned_cols=71 Identities=20% Similarity=0.319 Sum_probs=68.1
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc-cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI-STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR 72 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~-~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~ 72 (136)
|||+|||..++ |+++|++||+|.++.++. .+++++|||||+|.+.++|++|+..|||..+.|++|+|.++.
T Consensus 32 l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 32 LLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp EEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 89999999998 999999999999999998 889999999999999999999999999999999999999875
No 65
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=5.8e-19 Score=107.12 Aligned_cols=76 Identities=25% Similarity=0.371 Sum_probs=71.2
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHc------CceeCCceEEEEe
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLN------GLRLQNKTIKVSY 70 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~------~~~~~g~~l~v~~ 70 (136)
|||+|||..++ |+++|++||+|.+|.+++ .+++++|||||+|.+.++|+.|+..+| +..+.|++|.|.+
T Consensus 18 l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~l~v~~ 97 (111)
T 1x4h_A 18 VFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDL 97 (111)
T ss_dssp EEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEEEEEC
T ss_pred EEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEEEEEEE
Confidence 89999999998 999999999999999998 678999999999999999999999999 9999999999999
Q ss_pred eCCCCCC
Q psy6353 71 ARPSSES 77 (136)
Q Consensus 71 ~~~~~~~ 77 (136)
+.++...
T Consensus 98 a~~~~~~ 104 (111)
T 1x4h_A 98 AVTRDEA 104 (111)
T ss_dssp CCCCCCC
T ss_pred CCCCccC
Confidence 9877543
No 66
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=3.1e-19 Score=107.17 Aligned_cols=74 Identities=22% Similarity=0.347 Sum_probs=70.0
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSS 75 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~ 75 (136)
|||+|||..++ |+++|++||.|.++.++. .+|+++|||||+|.+.++|+.|+..+||..+.|+.|+|.++.++.
T Consensus 11 l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 89 (104)
T 1p1t_A 11 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEK 89 (104)
T ss_dssp EEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTCTT
T ss_pred EEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCCcc
Confidence 89999999998 999999999999999988 689999999999999999999999999999999999999988764
No 67
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.79 E-value=2.9e-19 Score=104.11 Aligned_cols=74 Identities=19% Similarity=0.358 Sum_probs=67.9
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCC-ceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQ-SLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSS 75 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~-~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~ 75 (136)
|||+|||..++ |+++|++||.|.++.++. .++. ++|||||+|.+.++|++|+..+||..+.|+.|+|.++.+..
T Consensus 7 l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 86 (88)
T 4a8x_A 7 VHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLAPW 86 (88)
T ss_dssp EEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECCCC
T ss_pred EEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECCCCC
Confidence 79999999998 999999999999999888 3344 89999999999999999999999999999999999998754
No 68
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=5.9e-19 Score=106.44 Aligned_cols=76 Identities=18% Similarity=0.304 Sum_probs=70.9
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc-c--CCCceeeEEEEcCCHHHHHHHHHHH-cCceeCCceEEEEeeCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI-S--TAQSLGYGFVNYHRPEDAEKAINTL-NGLRLQNKTIKVSYARPS 74 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~-~--~~~~kg~~fv~f~~~~~a~~a~~~~-~~~~~~g~~l~v~~~~~~ 74 (136)
|||+|||..++ |+++|++||+|.++.+++ . +++++|||||+|.+.++|++|+..+ |+..+.|++|.|.++.++
T Consensus 18 l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~~a~~~ 97 (107)
T 2cph_A 18 ILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADSE 97 (107)
T ss_dssp EEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEECCCC
T ss_pred EEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEEeCCCC
Confidence 89999999998 999999999999999987 3 8899999999999999999999999 999999999999999877
Q ss_pred CCC
Q psy6353 75 SES 77 (136)
Q Consensus 75 ~~~ 77 (136)
...
T Consensus 98 ~~~ 100 (107)
T 2cph_A 98 VTV 100 (107)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 69
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.3e-19 Score=107.77 Aligned_cols=71 Identities=14% Similarity=0.063 Sum_probs=66.6
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc-cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI-STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARP 73 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~-~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~ 73 (136)
|||+|||..+| |+++|++||+|.++.+++ ..|+++|||||+|.+.++|+.|+. +||..+.|++|.|.++.+
T Consensus 14 lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~~ 88 (103)
T 1s79_A 14 VYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKDD 88 (103)
T ss_dssp EEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHHH
T ss_pred EEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEchH
Confidence 89999999998 999999999999999999 559999999999999999999999 899999999999987653
No 70
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=5.9e-19 Score=104.66 Aligned_cols=73 Identities=18% Similarity=0.151 Sum_probs=67.1
Q ss_pred eeecCCChhhh---HH----HHhccCCCeeEEEEEc-cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCC
Q psy6353 2 VYQTLLNKLFT---YE----KVHLGFSDAEICVFLI-STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARP 73 (136)
Q Consensus 2 v~v~nl~~~~~---l~----~~f~~~G~v~~~~~~~-~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~ 73 (136)
|||+|||..++ |+ ++|++||+|.++.++. ..+ +|||||+|.+.++|++|+..+||..+.|++|+|.++.+
T Consensus 12 l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~--rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a~~ 89 (96)
T 2dgx_A 12 VQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY--QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLATG 89 (96)
T ss_dssp EEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST--TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred EEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC--CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCC
Confidence 79999999988 77 9999999999999987 333 89999999999999999999999999999999999987
Q ss_pred CCC
Q psy6353 74 SSE 76 (136)
Q Consensus 74 ~~~ 76 (136)
...
T Consensus 90 ~~~ 92 (96)
T 2dgx_A 90 ASG 92 (96)
T ss_dssp SSC
T ss_pred CCC
Confidence 654
No 71
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=4.1e-19 Score=105.75 Aligned_cols=74 Identities=23% Similarity=0.349 Sum_probs=69.8
Q ss_pred eeecCCChhhh---HHHHhccCCCee-EEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCce----EEEEee
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAE-ICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKT----IKVSYA 71 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~-~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~----l~v~~~ 71 (136)
|||+|||..++ |+++|++||+|. ++.+++ .+++++|||||+|.+.++|++|+..|||..+.|+. |+|.++
T Consensus 12 l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~v~~a 91 (99)
T 2div_A 12 LWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYA 91 (99)
T ss_dssp EEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECCEEET
T ss_pred EEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEEEeec
Confidence 89999999998 999999999999 999998 68999999999999999999999999999999999 999998
Q ss_pred CCCC
Q psy6353 72 RPSS 75 (136)
Q Consensus 72 ~~~~ 75 (136)
.+..
T Consensus 92 ~~~~ 95 (99)
T 2div_A 92 TYSG 95 (99)
T ss_dssp TCCS
T ss_pred CCCC
Confidence 8764
No 72
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=2e-18 Score=105.21 Aligned_cols=74 Identities=20% Similarity=0.221 Sum_probs=69.6
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc-cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI-STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSS 75 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~-~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~ 75 (136)
|||+|||..++ |+++|++||.|.++.++. .+++++|||||+|.+.++|+.|+..||+..+.|+.|.|.++.+..
T Consensus 18 l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 95 (114)
T 2do0_A 18 VFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDERAL 95 (114)
T ss_dssp EEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCCC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcccCC
Confidence 89999999998 999999999999999998 779999999999999999999999999999999999999987543
No 73
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.78 E-value=4.8e-19 Score=110.43 Aligned_cols=74 Identities=20% Similarity=0.323 Sum_probs=70.0
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSS 75 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~ 75 (136)
|||+|||..++ |+++|++||+|..+.+++ .+++++|||||+|.+.++|++|+..|||..+.|++|.|.++.++.
T Consensus 49 l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a~~~~ 127 (129)
T 2kxn_B 49 LGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKR 127 (129)
T ss_dssp BCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCCSSSS
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCC
Confidence 79999999998 999999999999999998 678999999999999999999999999999999999999998764
No 74
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.78 E-value=1.4e-18 Score=104.20 Aligned_cols=74 Identities=16% Similarity=0.282 Sum_probs=68.8
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~ 76 (136)
|||+|||..++ |+++|++|| |.++.+++ .+++++|||||+|.+.++|+.|+ ++||..+.|++|.|.++.++..
T Consensus 18 l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~~~ 95 (103)
T 2dng_A 18 AYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIAEGRKQ 95 (103)
T ss_dssp EEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEECCCCCC
T ss_pred EEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEecCCCC
Confidence 79999999998 999999997 99999998 67999999999999999999999 8999999999999999987754
Q ss_pred C
Q psy6353 77 S 77 (136)
Q Consensus 77 ~ 77 (136)
.
T Consensus 96 ~ 96 (103)
T 2dng_A 96 D 96 (103)
T ss_dssp C
T ss_pred C
Confidence 3
No 75
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.78 E-value=2.6e-19 Score=107.88 Aligned_cols=73 Identities=18% Similarity=0.298 Sum_probs=68.0
Q ss_pred eeecCCChhh------h---HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCc-eEEEEee
Q psy6353 2 VYQTLLNKLF------T---YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNK-TIKVSYA 71 (136)
Q Consensus 2 v~v~nl~~~~------~---l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~-~l~v~~~ 71 (136)
|||+|||..+ + |+++|++||+|.++.+++.+|+++|||||+|.+.++|+.|+..|||..+.|+ +|+|.++
T Consensus 18 l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~V~~a 97 (105)
T 2nlw_A 18 IVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVNLF 97 (105)
T ss_dssp EEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEEEECS
T ss_pred EEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEEEEEc
Confidence 8999999988 4 9999999999999988877889999999999999999999999999999999 9999988
Q ss_pred CCC
Q psy6353 72 RPS 74 (136)
Q Consensus 72 ~~~ 74 (136)
.+.
T Consensus 98 ~~~ 100 (105)
T 2nlw_A 98 TDF 100 (105)
T ss_dssp CCC
T ss_pred chH
Confidence 754
No 76
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.78 E-value=4.7e-19 Score=113.84 Aligned_cols=73 Identities=23% Similarity=0.199 Sum_probs=69.2
Q ss_pred eeecCCChhhh---HHHHhccCC--CeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFS--DAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPS 74 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G--~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~ 74 (136)
|||+|||..++ |+++|++|| .|.++.++. .+|+++|||||+|.+.++|+.|+..|||..+.|+.|.|.++.++
T Consensus 58 lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a~~~ 137 (156)
T 3n9u_C 58 VYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPATRQ 137 (156)
T ss_dssp EEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEECCHH
T ss_pred EEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEcCCC
Confidence 89999999998 999999999 999999988 78999999999999999999999999999999999999988653
No 77
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.4e-18 Score=101.95 Aligned_cols=73 Identities=15% Similarity=0.144 Sum_probs=69.1
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc-cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI-STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~-~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~ 76 (136)
|||+|||..++ |+++|++| .|.++.+++ .+|+++|||||+|.+.++|+.|+. +||..+.|++|.|.++.++.+
T Consensus 13 l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~~~~~ 89 (91)
T 2dgw_A 13 VKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREKSGPS 89 (91)
T ss_dssp EEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEESSCCC
T ss_pred EEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECCcCCC
Confidence 79999999998 99999999 999999999 899999999999999999999999 999999999999999987654
No 78
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.78 E-value=4.7e-19 Score=106.76 Aligned_cols=76 Identities=21% Similarity=0.247 Sum_probs=70.6
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCcee---CCceEEEEeeCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRL---QNKTIKVSYARP 73 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~---~g~~l~v~~~~~ 73 (136)
|||+|||..++ |+++|++||+|.++.++. .+++++|||||+|.+.++|+.|+..||+..+ .|++|.|.++.+
T Consensus 16 l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~ 95 (106)
T 2dgp_A 16 LFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADS 95 (106)
T ss_dssp EEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECCC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEEECCc
Confidence 89999999998 999999999999999988 6799999999999999999999999999887 899999999987
Q ss_pred CCCC
Q psy6353 74 SSES 77 (136)
Q Consensus 74 ~~~~ 77 (136)
+...
T Consensus 96 ~~~~ 99 (106)
T 2dgp_A 96 ESRG 99 (106)
T ss_dssp CSCC
T ss_pred cccc
Confidence 7643
No 79
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=5.9e-19 Score=107.00 Aligned_cols=73 Identities=21% Similarity=0.344 Sum_probs=68.1
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPS 74 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~ 74 (136)
|||+|||..++ |+++|++||+|.++.++...+.++|||||+|.+.++|++|+..+||..+.|++|.|.++.++
T Consensus 32 l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 107 (109)
T 2err_A 32 LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATAR 107 (109)
T ss_dssp EEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECCCS
T ss_pred EEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence 89999999998 99999999999999998844568999999999999999999999999999999999998875
No 80
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=9.8e-19 Score=106.33 Aligned_cols=76 Identities=22% Similarity=0.272 Sum_probs=68.9
Q ss_pred CeeecCCChhhh---HH---HHhccCCCeeEEEEEc--c---CCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEE
Q psy6353 1 MVYQTLLNKLFT---YE---KVHLGFSDAEICVFLI--S---TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVS 69 (136)
Q Consensus 1 ~v~v~nl~~~~~---l~---~~f~~~G~v~~~~~~~--~---~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~ 69 (136)
.|||+|||..++ |+ ++|++||+|.++.+++ . +++++|||||+|.+.++|++|+..|||..+.|++|+|.
T Consensus 17 ~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~ 96 (111)
T 2cpi_A 17 LVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKAS 96 (111)
T ss_dssp CEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred EEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEEEEE
Confidence 389999999998 88 9999999999999988 3 34677999999999999999999999999999999999
Q ss_pred eeCCCCC
Q psy6353 70 YARPSSE 76 (136)
Q Consensus 70 ~~~~~~~ 76 (136)
++.++..
T Consensus 97 ~a~~k~~ 103 (111)
T 2cpi_A 97 LGTTKYC 103 (111)
T ss_dssp SCCCCSC
T ss_pred ecccccc
Confidence 9988753
No 81
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.78 E-value=1.8e-19 Score=102.18 Aligned_cols=69 Identities=19% Similarity=0.323 Sum_probs=65.0
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEee
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYA 71 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~ 71 (136)
|||+|||..++ |+++|++||+|.++.++. .+++++|||||+|.+.++|++|+. +||..+.|++|.|.++
T Consensus 2 l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 2 IFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp EEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred EEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 79999999998 999999999999999988 589999999999999999999998 9999999999999864
No 82
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=8.9e-19 Score=106.70 Aligned_cols=76 Identities=24% Similarity=0.323 Sum_probs=70.4
Q ss_pred eeecCCChhhh---HHHHhccCCCee--------EEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEE
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAE--------ICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKV 68 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~--------~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v 68 (136)
|||+|||..++ |+++|++||.|. .+.++. .+++++|||||+|.+.++|+.|+..|||..+.|++|+|
T Consensus 18 l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 97 (113)
T 2cpe_A 18 IYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKV 97 (113)
T ss_dssp EEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred EEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCCCEEEE
Confidence 89999999998 999999999998 588887 77999999999999999999999999999999999999
Q ss_pred EeeCCCCCC
Q psy6353 69 SYARPSSES 77 (136)
Q Consensus 69 ~~~~~~~~~ 77 (136)
.++.++...
T Consensus 98 ~~a~~~~~~ 106 (113)
T 2cpe_A 98 SLARKKPPM 106 (113)
T ss_dssp ECSSCCCCS
T ss_pred EECCCCCCC
Confidence 999877543
No 83
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.2e-18 Score=104.62 Aligned_cols=74 Identities=20% Similarity=0.293 Sum_probs=68.7
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cC-CCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--ST-AQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSS 75 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~-~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~ 75 (136)
|||+|||..++ |+++|++|| |.++.++. .+ ++++|||||+|.+.++|++|+ .+|+..+.|++|.|.++.++.
T Consensus 18 l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~~ 95 (104)
T 1wi8_A 18 AFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDVADQAQ 95 (104)
T ss_dssp EEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEECCCCC
T ss_pred EEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEEccCCC
Confidence 79999999998 999999999 99999988 44 899999999999999999999 899999999999999998876
Q ss_pred CC
Q psy6353 76 ES 77 (136)
Q Consensus 76 ~~ 77 (136)
..
T Consensus 96 ~~ 97 (104)
T 1wi8_A 96 DK 97 (104)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 84
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.78 E-value=1.4e-19 Score=104.08 Aligned_cols=67 Identities=19% Similarity=0.350 Sum_probs=62.3
Q ss_pred eeecCCChhh------h---HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCc-eEEE
Q psy6353 2 VYQTLLNKLF------T---YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNK-TIKV 68 (136)
Q Consensus 2 v~v~nl~~~~------~---l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~-~l~v 68 (136)
|||+|||..+ + |+++|++||+|.++.+++.+|+++|||||+|.+.++|+.|+..|||..+.|+ +|+|
T Consensus 4 l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 4 IVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp EEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 8999999888 4 8999999999999988777889999999999999999999999999999999 8765
No 85
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=6.9e-19 Score=105.67 Aligned_cols=75 Identities=20% Similarity=0.346 Sum_probs=70.7
Q ss_pred eeecCCChhhh---HHHHhcc-CCCeeEEEEEc-cCCCceeeEEEEcCCHHHHHHHHHHHcCce-eCCceEEEEeeCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLG-FSDAEICVFLI-STAQSLGYGFVNYHRPEDAEKAINTLNGLR-LQNKTIKVSYARPSS 75 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~-~G~v~~~~~~~-~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~-~~g~~l~v~~~~~~~ 75 (136)
|||+|||..++ |+++|++ ||.|.++.++. .+++++|||||+|.+.++|+.|+..+||.. +.|++|.|.++.++.
T Consensus 12 l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a~~~~ 91 (104)
T 2dhg_A 12 LFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKA 91 (104)
T ss_dssp EEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBCCCCC
T ss_pred EEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEccCCC
Confidence 89999999998 9999999 99999999999 889999999999999999999999999999 999999999987765
Q ss_pred C
Q psy6353 76 E 76 (136)
Q Consensus 76 ~ 76 (136)
.
T Consensus 92 ~ 92 (104)
T 2dhg_A 92 S 92 (104)
T ss_dssp S
T ss_pred c
Confidence 4
No 86
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.78 E-value=1.3e-18 Score=109.63 Aligned_cols=75 Identities=27% Similarity=0.441 Sum_probs=70.8
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~ 76 (136)
|||+|||..++ |+++|++||+|.++.+++ .+++++|||||+|.+.++|++|+..+||..+.|+.|+|.++.+...
T Consensus 45 l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 124 (139)
T 1u6f_A 45 LMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAASGHQ 124 (139)
T ss_dssp EEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEESSCCCC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 89999999998 999999999999999988 6789999999999999999999999999999999999999987654
No 87
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=5.4e-19 Score=105.05 Aligned_cols=73 Identities=14% Similarity=0.180 Sum_probs=67.8
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPS 74 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~ 74 (136)
|||+|||..++ |+++|++||.|..+.++. .+++++|||||+|.+.++|++|+..+||..+.|++|+|.++...
T Consensus 18 l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 95 (98)
T 2cqp_A 18 IKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGSGP 95 (98)
T ss_dssp EEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESSCS
T ss_pred EEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcCCC
Confidence 89999999998 999999999998777666 78899999999999999999999999999999999999998754
No 88
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.77 E-value=7.9e-19 Score=108.87 Aligned_cols=75 Identities=20% Similarity=0.288 Sum_probs=70.3
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~ 76 (136)
|||+|||..++ |+++|++||.|.++.++. .++.++|||||+|.+.++|+.|+..|||..+.|+.|.|.++.++..
T Consensus 25 l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 104 (126)
T 3ex7_B 25 LFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGP 104 (126)
T ss_dssp EEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEESEESSS
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEecCCCC
Confidence 89999999998 999999999999999988 5899999999999999999999999999999999999999876544
No 89
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.77 E-value=1.9e-18 Score=100.55 Aligned_cols=69 Identities=20% Similarity=0.355 Sum_probs=64.4
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEee
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYA 71 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~ 71 (136)
|||+|||..++ |+++|++||+|.++.+++ .+|+++|||||+|.+.++|++|+. +++..+.|++|.|.++
T Consensus 14 l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 14 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKKA 87 (87)
T ss_dssp EEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEEC
T ss_pred EEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEeC
Confidence 79999999998 999999999999999988 679999999999999999999997 5888999999999864
No 90
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=7.8e-19 Score=105.64 Aligned_cols=75 Identities=20% Similarity=0.345 Sum_probs=70.2
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~ 76 (136)
|||+|||..++ |+++|++||+|.++.+++ .+++++|||||+|.+.++|++|+.. |+..+.|+.|.|.++.++..
T Consensus 19 l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~a~~~~~ 97 (105)
T 2dh8_A 19 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKPCTPRGM 97 (105)
T ss_dssp ECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCCSCCSSC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEccCCCC
Confidence 79999999998 999999999999999998 6899999999999999999999998 99999999999999987764
Q ss_pred C
Q psy6353 77 S 77 (136)
Q Consensus 77 ~ 77 (136)
.
T Consensus 98 ~ 98 (105)
T 2dh8_A 98 Q 98 (105)
T ss_dssp C
T ss_pred C
Confidence 3
No 91
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.77 E-value=1.1e-18 Score=103.76 Aligned_cols=69 Identities=14% Similarity=0.084 Sum_probs=63.6
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCce--eCCceEEEEeeCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLR--LQNKTIKVSYARPS 74 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~--~~g~~l~v~~~~~~ 74 (136)
|||+|||..+| |+++|++||+|.++.+++ +||+|||+|.+.++|..|++.+|+.. +.|++|.|.+++++
T Consensus 24 l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~----~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~k 97 (100)
T 3r27_A 24 VHIRGLIDGVVEADLVEALQEFGPISYVVVMP----KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQ 97 (100)
T ss_dssp EEEESCCTTCCHHHHHHHHGGGSCEEEEEEET----TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSCS
T ss_pred EEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc----CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEecccc
Confidence 79999999998 999999999999999875 68999999999999999999998864 78999999999865
No 92
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.77 E-value=5.3e-19 Score=105.62 Aligned_cols=72 Identities=18% Similarity=0.275 Sum_probs=67.5
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc-c--CCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI-S--TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSS 75 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~-~--~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~ 75 (136)
|||+|||..++ |+++|++|| |.++.+++ . +|+++|||||+|.+.++|+.|+ .+||..+.|+.|.|.++.++.
T Consensus 22 l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~a~~~~ 99 (100)
T 2j76_E 22 AFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDVADQAQ 99 (100)
T ss_dssp EEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEECCCSC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEeccCCC
Confidence 79999999998 999999999 99999988 4 7999999999999999999999 899999999999999998764
No 93
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.77 E-value=6.1e-19 Score=104.21 Aligned_cols=72 Identities=15% Similarity=0.186 Sum_probs=66.5
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARP 73 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~ 73 (136)
|||+|||..++ |+++|++||.|..+.++. .+++++|||||+|.+.++|++|+..+|+..+.|++|+|.++.+
T Consensus 18 l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~s 94 (95)
T 2ek1_A 18 IKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPSS 94 (95)
T ss_dssp EEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC-
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEeccC
Confidence 89999999998 999999999998887777 7889999999999999999999999999999999999988753
No 94
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2e-18 Score=105.66 Aligned_cols=75 Identities=17% Similarity=0.285 Sum_probs=70.2
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~ 76 (136)
|||+|||..++ |+++|++||.|..+.++. .+++++|||||+|.+.++|+.|+.. |+..+.|+.|.|.++.++..
T Consensus 30 l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~~~~ 108 (116)
T 1x4b_A 30 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVAREE 108 (116)
T ss_dssp EEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSSCCC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCCCcc
Confidence 89999999998 999999999999999998 6799999999999999999999997 99999999999999988765
Q ss_pred C
Q psy6353 77 S 77 (136)
Q Consensus 77 ~ 77 (136)
.
T Consensus 109 ~ 109 (116)
T 1x4b_A 109 S 109 (116)
T ss_dssp C
T ss_pred C
Confidence 3
No 95
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.77 E-value=2e-18 Score=106.79 Aligned_cols=74 Identities=18% Similarity=0.263 Sum_probs=69.3
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~ 76 (136)
|||+|||..++ |+++|++||.|.++.++. .+++++|||||+|.+.++|+.|+ .+||..+.|+.|.|.++.+...
T Consensus 39 l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~~~ 117 (124)
T 2jwn_A 39 VYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRTNMP 117 (124)
T ss_dssp EEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSCCCS
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCCCCC
Confidence 79999999998 999999999999999988 68999999999999999999999 7999999999999999886544
No 96
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=8.1e-19 Score=105.28 Aligned_cols=72 Identities=15% Similarity=0.164 Sum_probs=65.3
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHc--CceeCCceEEEEeeCCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLN--GLRLQNKTIKVSYARPSSE 76 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~--~~~~~g~~l~v~~~~~~~~ 76 (136)
|||+|||..++ |+++|++||+|.++.+++ .||||||+|.+.++|+.|+..++ +..+.|++|.|.++.++..
T Consensus 19 LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~----~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~~~ 94 (105)
T 1sjq_A 19 IHIRKLPIDVTEGEVISLGLPFGKVTNLLMLK----GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKEL 94 (105)
T ss_dssp EEECSCCTTSCHHHHHHHHHHHCCEEEEEEET----TTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSSSC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEc----CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCCCC
Confidence 89999999998 999999999999999986 48999999999999999999886 4789999999999987654
Q ss_pred C
Q psy6353 77 S 77 (136)
Q Consensus 77 ~ 77 (136)
.
T Consensus 95 ~ 95 (105)
T 1sjq_A 95 K 95 (105)
T ss_dssp C
T ss_pred C
Confidence 3
No 97
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.77 E-value=2.6e-18 Score=110.23 Aligned_cols=75 Identities=24% Similarity=0.350 Sum_probs=70.7
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~ 76 (136)
|||+|||..++ |+++|++||+|.+|.++. .++.++|||||+|.+.++|++|+..||+..+.|++|+|.++.+...
T Consensus 42 l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 121 (156)
T 1h2v_Z 42 LYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFKE 121 (156)
T ss_dssp EEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEESCCCT
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 89999999988 999999999999999988 6799999999999999999999999999999999999999987654
No 98
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=3.1e-18 Score=103.70 Aligned_cols=74 Identities=19% Similarity=0.306 Sum_probs=68.1
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~ 76 (136)
|||+|||..++ |+++|++||.|..+.++. +++++|||||+|.+.++|+.|+..||+..+.|++|+|.++.+...
T Consensus 25 l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 101 (109)
T 1x4a_A 25 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN-RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRG 101 (109)
T ss_dssp EEEESCCTTCCHHHHHHHHGGGSCEEEEEECC-SSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCCCCC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE-CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcccCCC
Confidence 89999999998 999999999999998864 556899999999999999999999999999999999999987654
No 99
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.77 E-value=3.6e-18 Score=105.69 Aligned_cols=75 Identities=17% Similarity=0.282 Sum_probs=70.8
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc-cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI-STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~-~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~ 76 (136)
|||+|||..++ |+++|++||+|.++.++. .+|+++|||||+|.+.++|+.|+..+||..+.|++|+|.++.+...
T Consensus 38 l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 116 (124)
T 2kt5_A 38 LLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQID 116 (124)
T ss_dssp EEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEECCTTC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCCC
Confidence 79999999988 999999999999999999 8889999999999999999999999999999999999999987643
No 100
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.77 E-value=1.2e-18 Score=111.87 Aligned_cols=75 Identities=23% Similarity=0.340 Sum_probs=70.8
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~ 76 (136)
|||+|||..++ |+++|++||.|.++.+++ .+|+++|||||+|.+.++|+.|+..|||..+.|++|.|.++.+...
T Consensus 73 l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 152 (158)
T 2kn4_A 73 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP 152 (158)
T ss_dssp EEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 89999999998 999999999999999988 6899999999999999999999999999999999999999987644
No 101
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.6e-18 Score=104.75 Aligned_cols=73 Identities=23% Similarity=0.340 Sum_probs=68.4
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc-cCCCceeeEEEEcCCHHHHHHHHHHHcCcee--------CCceEEEE
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI-STAQSLGYGFVNYHRPEDAEKAINTLNGLRL--------QNKTIKVS 69 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~-~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~--------~g~~l~v~ 69 (136)
|||+|||..++ |+++|++||.|.++.++. .++.++|||||+|.+.++|+.|+..|||..+ .+++|.|.
T Consensus 28 l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~~l~v~ 107 (114)
T 1x5o_A 28 LYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCK 107 (114)
T ss_dssp EEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSSCBEEE
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCCceeEE
Confidence 89999999998 999999999999999999 8899999999999999999999999999999 57889999
Q ss_pred eeCCC
Q psy6353 70 YARPS 74 (136)
Q Consensus 70 ~~~~~ 74 (136)
++.|+
T Consensus 108 ~a~p~ 112 (114)
T 1x5o_A 108 FSGPS 112 (114)
T ss_dssp ECCCS
T ss_pred ccCCC
Confidence 98865
No 102
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.77 E-value=7.5e-19 Score=107.81 Aligned_cols=71 Identities=28% Similarity=0.508 Sum_probs=66.8
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR 72 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~ 72 (136)
|||+|||..++ |+++|++||.|.++.+++ .+++++|||||+|.+.++|+.|+..|||..+.|++|+|.+++
T Consensus 43 l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ak 118 (118)
T 2khc_A 43 LFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLKK 118 (118)
T ss_dssp EEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC-
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecC
Confidence 79999999998 999999999999999988 678999999999999999999999999999999999998863
No 103
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.76 E-value=3e-18 Score=103.89 Aligned_cols=74 Identities=23% Similarity=0.337 Sum_probs=68.6
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~ 76 (136)
|||+|||..++ |+++|++||+|.++.+++ .+|+++|||||+|.+.++|+.|+..+ +..+.|+.|.|.++.++..
T Consensus 28 lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a~~~~~ 106 (109)
T 2rs2_A 28 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVAFPRRA 106 (109)
T ss_dssp EEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEECCCCCC
T ss_pred EEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEccCCCC
Confidence 89999999998 999999999999999998 67999999999999999999999975 6999999999999987654
No 104
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.76 E-value=2.3e-18 Score=111.55 Aligned_cols=75 Identities=20% Similarity=0.311 Sum_probs=70.2
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~ 76 (136)
|||+|||..++ |+++|++||.|..|.++. .+|.++|||||+|.+.++|+.|+..|||..+.|++|.|.++.++..
T Consensus 75 l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 154 (165)
T 1rk8_A 75 LFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGP 154 (165)
T ss_dssp EEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC-
T ss_pred EEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCC
Confidence 89999999998 999999999999999998 6899999999999999999999999999999999999999876543
No 105
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.6e-19 Score=103.80 Aligned_cols=71 Identities=25% Similarity=0.350 Sum_probs=66.1
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR 72 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~ 72 (136)
|||+|||..++ |+++|++||+|.++.++. .+++++|||||+|.+.++|+.|+..|||..+.|+.+++.++.
T Consensus 8 l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 8 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp EEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 79999999998 999999999999999998 679999999999999999999999999999999998877654
No 106
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.8e-18 Score=105.82 Aligned_cols=74 Identities=28% Similarity=0.361 Sum_probs=68.8
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~ 76 (136)
|||+|||..++ |+++|++||+|.++.+++ .+++++|||||+|.+.++|++|+..+|+ .+.|++|.|.++.+...
T Consensus 20 l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a~~~~~ 98 (116)
T 2cqd_A 20 IFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLAYLGAK 98 (116)
T ss_dssp EEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEESTTTCC
T ss_pred EEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEcccCCC
Confidence 89999999998 999999999999999998 6799999999999999999999999998 89999999999976543
No 107
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.76 E-value=1.3e-18 Score=108.10 Aligned_cols=73 Identities=14% Similarity=0.209 Sum_probs=65.9
Q ss_pred eeecCCChhhh---H----HHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCC
Q psy6353 2 VYQTLLNKLFT---Y----EKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPS 74 (136)
Q Consensus 2 v~v~nl~~~~~---l----~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~ 74 (136)
|||+|||..++ | .++|++||+|.+|.+. .+++++|||||+|.+.++|+.|+..|||..+.|++|+|.++.++
T Consensus 32 LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~-~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a~~~ 110 (127)
T 2a3j_A 32 VLITNINPEVPKEKLQALLYALASSQGDILDIVVD-LSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFSETP 110 (127)
T ss_dssp EEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEEC-CCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEECCCC
T ss_pred EEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEec-cCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEccCc
Confidence 89999999887 3 3689999999988775 46789999999999999999999999999999999999999876
Q ss_pred C
Q psy6353 75 S 75 (136)
Q Consensus 75 ~ 75 (136)
.
T Consensus 111 ~ 111 (127)
T 2a3j_A 111 Q 111 (127)
T ss_dssp C
T ss_pred c
Confidence 4
No 108
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.1e-18 Score=106.50 Aligned_cols=72 Identities=19% Similarity=0.250 Sum_probs=67.7
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPS 74 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~ 74 (136)
|||+|||..++ |+++|++||.|.++.++. .+++++|||||+|.+.++|+.|+ .+||..+.|+.|.|.++.++
T Consensus 28 l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~ 104 (114)
T 2cq4_A 28 VFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQAE 104 (114)
T ss_dssp EEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecCCC
Confidence 89999999998 999999999999999998 66899999999999999999999 89999999999999988654
No 109
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=7.8e-19 Score=99.89 Aligned_cols=69 Identities=23% Similarity=0.349 Sum_probs=65.3
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEee
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYA 71 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~ 71 (136)
|||+|||..++ |+++|++||+|.++.+++ .+|+++|||||+|.+.++|+.|+..++ ..+.|++|.+.++
T Consensus 3 l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 3 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp EEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 79999999998 999999999999999998 579999999999999999999999998 9999999999876
No 110
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.76 E-value=2e-19 Score=105.40 Aligned_cols=74 Identities=23% Similarity=0.354 Sum_probs=66.0
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~ 76 (136)
|||+|||..++ |+++|++||+|.++.+++ .+|+++|||||+|.+.+ |+.|+..+||..+.|++|+|.++.+...
T Consensus 4 l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~~~ 82 (90)
T 2ki2_A 4 IYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPKKS 82 (90)
T ss_dssp EEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC-----
T ss_pred EEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCCCC
Confidence 79999999998 899999999999999998 67999999999999999 9999999999999999999999887543
No 111
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=2e-18 Score=103.32 Aligned_cols=71 Identities=14% Similarity=0.137 Sum_probs=64.0
Q ss_pred eeecCCCh-hhh---HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcC--ceeCCceEEEEeeCCCC
Q psy6353 2 VYQTLLNK-LFT---YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNG--LRLQNKTIKVSYARPSS 75 (136)
Q Consensus 2 v~v~nl~~-~~~---l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~--~~~~g~~l~v~~~~~~~ 75 (136)
|||+|||. .++ |+++|++||.|.++.+++ .+|||||+|.+.++|+.|+..||+ ..+.|++|.|.++.+..
T Consensus 18 l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~----~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~ 93 (102)
T 1x4d_A 18 VHIMDFQRGKNLRYQLLQLVEPFGVISNHLILN----KINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKYK 93 (102)
T ss_dssp EEEESCCCSSSHHHHHHTTTGGGSCEEEEEECS----SSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECCCT
T ss_pred EEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEc----CCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCCCC
Confidence 89999999 887 999999999999999875 568999999999999999999886 46999999999998654
Q ss_pred C
Q psy6353 76 E 76 (136)
Q Consensus 76 ~ 76 (136)
.
T Consensus 94 ~ 94 (102)
T 1x4d_A 94 R 94 (102)
T ss_dssp T
T ss_pred C
Confidence 3
No 112
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=9.9e-18 Score=100.43 Aligned_cols=74 Identities=15% Similarity=0.175 Sum_probs=68.2
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~ 76 (136)
|||+|||..++ |+++|++||+|..+.++. .+++++|||||+|.+.++|+.|+. +++.+.|+.|.|.++.++..
T Consensus 18 l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~a~~~~~ 95 (103)
T 2cqg_A 18 LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKLPNSKQS 95 (103)
T ss_dssp EEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEECCCTTCC
T ss_pred EEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEecCCCCc
Confidence 89999999998 999999999999999988 679999999999999999999999 47899999999999987754
Q ss_pred C
Q psy6353 77 S 77 (136)
Q Consensus 77 ~ 77 (136)
.
T Consensus 96 ~ 96 (103)
T 2cqg_A 96 Q 96 (103)
T ss_dssp C
T ss_pred C
Confidence 3
No 113
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.75 E-value=1.3e-18 Score=109.21 Aligned_cols=75 Identities=23% Similarity=0.340 Sum_probs=70.6
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~ 76 (136)
|||+|||..++ |+++|++||+|..+.++. .+++++|||||+|.+.++|+.|+..|||..+.|++|+|.++.+...
T Consensus 50 l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~ 129 (135)
T 2lea_A 50 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP 129 (135)
T ss_dssp EEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 89999999998 999999999999999988 6899999999999999999999999999999999999999987654
No 114
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=5.6e-18 Score=101.17 Aligned_cols=72 Identities=21% Similarity=0.301 Sum_probs=66.0
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc-cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI-STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~-~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~ 76 (136)
|||+|||..++ |+++|++||.| .++. .+++++|||||+|.+.++|++|+..+|+..+.|++|+|.++.++..
T Consensus 18 l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 93 (101)
T 2fc9_A 18 LVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGS 93 (101)
T ss_dssp EEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSSCCC
T ss_pred EEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCCCC
Confidence 89999999998 99999999977 5666 7899999999999999999999999999999999999999987754
No 115
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.75 E-value=5.7e-19 Score=110.34 Aligned_cols=74 Identities=20% Similarity=0.268 Sum_probs=69.1
Q ss_pred eeecCCChhhh---HHHHhccCCCeeE--EEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCc----eeCCceEEEEe
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEI--CVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGL----RLQNKTIKVSY 70 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~--~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~----~~~g~~l~v~~ 70 (136)
|||+|||..++ |+++|++||.|.. |++++ .+|+++|||||+|.+. +|..|+..|||. .+.|++|.|.+
T Consensus 26 lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l~V~~ 104 (131)
T 2m2b_A 26 IILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTINVEF 104 (131)
T ss_dssp EEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCCCCEE
T ss_pred EEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEEEEEE
Confidence 89999999998 9999999999976 99998 5899999999999999 999999999999 99999999999
Q ss_pred eCCCCC
Q psy6353 71 ARPSSE 76 (136)
Q Consensus 71 ~~~~~~ 76 (136)
+.+...
T Consensus 105 a~~~~~ 110 (131)
T 2m2b_A 105 AKGSKR 110 (131)
T ss_dssp CCCSCC
T ss_pred CCCCCC
Confidence 987644
No 116
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3e-18 Score=103.01 Aligned_cols=73 Identities=19% Similarity=0.171 Sum_probs=67.5
Q ss_pred eeecCCChhhh---HHHHhccCCCeeE-EEEEc-cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEI-CVFLI-STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSS 75 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~-~~~~~-~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~ 75 (136)
|||+|||..++ |+++|++||.|.+ +.++. .+|+++|||||+|.+.++|++|+.. |+..++|+.|.|.++.++.
T Consensus 18 l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~~~~~ 95 (104)
T 1wg5_A 18 VRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKSSRAE 95 (104)
T ss_dssp EEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEECTTT
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEECCHHH
Confidence 89999999999 9999999999987 77877 8899999999999999999999997 9999999999999887653
No 117
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=5.4e-18 Score=103.95 Aligned_cols=71 Identities=15% Similarity=0.172 Sum_probs=64.9
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcC--ceeCCceEEEEeeCCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNG--LRLQNKTIKVSYARPSSE 76 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~--~~~~g~~l~v~~~~~~~~ 76 (136)
|||+|||..++ |+++|++||.|.++.+++ .||||||+|.+.++|++|+..+++ ..+.|++|.|.++.++..
T Consensus 34 LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~----~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k~~ 109 (119)
T 2ad9_A 34 IHIRKLPIDVTEGEVISLGLPFGKVTNLLMLK----GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKEL 109 (119)
T ss_dssp EEEESCCTTCCHHHHHHHHTTTSCCCEEEEEG----GGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSSSSC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC----CCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccCCCC
Confidence 89999999998 999999999999999986 489999999999999999998874 689999999999987653
No 118
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=5.4e-18 Score=101.61 Aligned_cols=73 Identities=15% Similarity=0.084 Sum_probs=66.9
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc-cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI-STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~-~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~ 76 (136)
|||+|||..++ |+++|++||.+ ++.++. .+++++|||||+|.+.++|++|+. +|+..+.++.|+|..+.+...
T Consensus 18 l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~~~~~~ 94 (102)
T 1wez_A 18 VHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLNSTAGT 94 (102)
T ss_dssp EEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEECCCCC
T ss_pred EEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECCCCCC
Confidence 89999999998 99999999965 999998 889999999999999999999995 799999999999998876543
No 119
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.3e-18 Score=104.18 Aligned_cols=75 Identities=17% Similarity=0.256 Sum_probs=68.9
Q ss_pred eeecCCChhhh---HHHHhccCCC-eeEEEEE-c--cCCCceeeEEEEcCCHHHHHHHHHHHc--CceeCCceEEEEeeC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSD-AEICVFL-I--STAQSLGYGFVNYHRPEDAEKAINTLN--GLRLQNKTIKVSYAR 72 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~-v~~~~~~-~--~~~~~kg~~fv~f~~~~~a~~a~~~~~--~~~~~g~~l~v~~~~ 72 (136)
|||+|||..++ |+++|++||. |.++.++ . .+++++|||||+|.+.++|+.|+..+| +..+.|++|+|.++.
T Consensus 11 l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V~~a~ 90 (109)
T 2dis_A 11 LFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAE 90 (109)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEEESC
T ss_pred EEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEEEEcC
Confidence 79999999998 9999999998 9999998 4 678999999999999999999999996 599999999999998
Q ss_pred CCCC
Q psy6353 73 PSSE 76 (136)
Q Consensus 73 ~~~~ 76 (136)
++..
T Consensus 91 ~~~~ 94 (109)
T 2dis_A 91 PEID 94 (109)
T ss_dssp SSCS
T ss_pred CCCC
Confidence 7654
No 120
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.74 E-value=3e-18 Score=104.08 Aligned_cols=71 Identities=15% Similarity=0.153 Sum_probs=64.4
Q ss_pred eeecCCChhhh---HHHHhccCC-CeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFS-DAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPS 74 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G-~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~ 74 (136)
|||+|||..++ |+++|++|| .|..+.++ .++++|||||+|.+.++|+.|+..|||..+.|+.|+|.++...
T Consensus 31 l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~--~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~~ 105 (111)
T 2jvr_A 31 ITMKNLPEGCSWQDLKDLARENSLETTFSSVN--TRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDNP 105 (111)
T ss_dssp EEEECSSCCCCHHHHHHHHHHHTCCCSEEECS--SCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC-
T ss_pred EEEECCCCCCCHHHHHHHHHHhCCeeEEEEEE--cCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 79999999998 999999999 89988874 3468999999999999999999999999999999999988654
No 121
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=8.7e-18 Score=100.02 Aligned_cols=71 Identities=23% Similarity=0.305 Sum_probs=66.3
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~ 76 (136)
|||+|||..++ |+++|++||+|.++.+++ ++|||||+|.+.++|++|+..|||..+.|++|+|.++.++..
T Consensus 18 l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~----~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~ 91 (99)
T 2cpj_A 18 LFVGNLPPDITEEEMRKLFEKYGKAGEVFIHK----DKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSAS 91 (99)
T ss_dssp EEEESCCTTCCHHHHHHHTSTTCCCSEEEEET----TTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCSC
T ss_pred EEEeCCCCCCCHHHHHHHHhhcCCeEEEEEec----CCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCCCC
Confidence 79999999998 999999999999999875 589999999999999999999999999999999999987654
No 122
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=6.5e-18 Score=101.54 Aligned_cols=71 Identities=8% Similarity=0.073 Sum_probs=64.0
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcC--ceeCCceEEEEeeCCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNG--LRLQNKTIKVSYARPSSE 76 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~--~~~~g~~l~v~~~~~~~~ 76 (136)
|||+|||..++ |+++|++||.|.++.+++ .||||||+|.+.++|+.|+..+++ ..+.|++|.|.++.++..
T Consensus 18 l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~----~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~~~ 93 (104)
T 1wex_A 18 VHVRGLCESVVEADLVEALEKFGTICYVMMMP----FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSKRI 93 (104)
T ss_dssp EEEESCCSSCCHHHHHHHHTTTSCEEEEEEET----TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSSSC
T ss_pred EEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC----CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccCccc
Confidence 89999999998 999999999999998875 489999999999999999998875 458999999999987654
No 123
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.2e-17 Score=99.87 Aligned_cols=71 Identities=18% Similarity=0.166 Sum_probs=64.2
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHH--cCceeCCceEEEEeeCCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTL--NGLRLQNKTIKVSYARPSSE 76 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~--~~~~~~g~~l~v~~~~~~~~ 76 (136)
|||+|||..++ |+++|++||.|.++.+++ .+|||||+|.+.++|+.|+..+ ++..+.|++|.|.++.++..
T Consensus 18 l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~----~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~~ 93 (101)
T 2cq1_A 18 LHIRKLPGEVTETEVIALGLPFGKVTNILMLK----GKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKEL 93 (101)
T ss_dssp EEEESCCTTCCHHHHHHTTTTTSCEEEEEEET----TTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSCSSC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC----CCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCcccC
Confidence 89999999998 999999999999998875 4899999999999999999976 46889999999999987653
No 124
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.74 E-value=2.6e-18 Score=101.86 Aligned_cols=74 Identities=19% Similarity=0.373 Sum_probs=67.5
Q ss_pred eeecCCChhhh---HH----HHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCC
Q psy6353 2 VYQTLLNKLFT---YE----KVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPS 74 (136)
Q Consensus 2 v~v~nl~~~~~---l~----~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~ 74 (136)
|||+|||..++ |+ ++|++||.|.++.+++ +|.++|||||+|.+.++|+.|+..|||..+.|++|.|.++.+.
T Consensus 11 l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 89 (97)
T 1nu4_A 11 IYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR-SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTD 89 (97)
T ss_dssp EEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH-HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSSC
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc-CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEccCC
Confidence 79999999998 77 9999999999998774 5678899999999999999999999999999999999999876
Q ss_pred CC
Q psy6353 75 SE 76 (136)
Q Consensus 75 ~~ 76 (136)
..
T Consensus 90 ~~ 91 (97)
T 1nu4_A 90 SD 91 (97)
T ss_dssp CT
T ss_pred Cc
Confidence 43
No 125
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.74 E-value=4.7e-18 Score=106.95 Aligned_cols=70 Identities=27% Similarity=0.406 Sum_probs=65.9
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEee
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYA 71 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~ 71 (136)
|||+|||..++ |+++|++||+|.++.+++ .+++++|||||+|.+.++|++|+..+||..+.|++|+|.++
T Consensus 66 l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 66 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp EEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred EEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 79999999998 999999999999999988 67899999999999999999999999999999999999864
No 126
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3.1e-18 Score=104.54 Aligned_cols=72 Identities=18% Similarity=0.186 Sum_probs=67.5
Q ss_pred eeecCCChhhh---HHHHhccCCCe-eEEEEEc-cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDA-EICVFLI-STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPS 74 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v-~~~~~~~-~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~ 74 (136)
|||+|||..++ |+++|++||.| .++.++. .+|+++|||||+|.+.++|++|+.. |+..+.|++|.|.++.++
T Consensus 18 l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a~~~ 94 (114)
T 2cpy_A 18 AHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVVTLE 94 (114)
T ss_dssp EEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEECHH
T ss_pred EEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEECCHH
Confidence 89999999998 99999999999 8899998 8899999999999999999999996 999999999999988654
No 127
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.2e-17 Score=99.09 Aligned_cols=71 Identities=13% Similarity=0.287 Sum_probs=65.6
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeC--CceEEEEeeCCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQ--NKTIKVSYARPSSE 76 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~--g~~l~v~~~~~~~~ 76 (136)
|||+|||..++ |+++|++||+|.++.++. .+|||||+|.+.++|+.|+..||+..+. |++|+|.++.++..
T Consensus 20 l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~----~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~~~~ 95 (97)
T 1why_A 20 LWVGGLGPNTSLAALAREFDRFGSIRTIDHVK----GDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKSGPS 95 (97)
T ss_dssp EEEECCCSSCCHHHHHHHHHTTSCEEEEEECS----SSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCCCCC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeC----CCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCCCCC
Confidence 89999999988 999999999999998864 3899999999999999999999999999 99999999988754
No 128
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=4.1e-18 Score=103.43 Aligned_cols=71 Identities=14% Similarity=0.206 Sum_probs=64.1
Q ss_pred eeecCCChh-hh---HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcC--ceeCCceEEEEeeCCCC
Q psy6353 2 VYQTLLNKL-FT---YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNG--LRLQNKTIKVSYARPSS 75 (136)
Q Consensus 2 v~v~nl~~~-~~---l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~--~~~~g~~l~v~~~~~~~ 75 (136)
|||+|||.. ++ |+++|++||+|.++.+++ ++|||||+|.+.++|+.|+..+|+ ..+.|++|.|.++.++.
T Consensus 28 l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~----~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~~~ 103 (112)
T 1x4f_A 28 IHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR----MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEKYK 103 (112)
T ss_dssp EEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET----TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECSCS
T ss_pred EEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec----CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECcccc
Confidence 899999998 87 999999999999999875 689999999999999999998864 66999999999998765
Q ss_pred C
Q psy6353 76 E 76 (136)
Q Consensus 76 ~ 76 (136)
.
T Consensus 104 ~ 104 (112)
T 1x4f_A 104 K 104 (112)
T ss_dssp S
T ss_pred c
Confidence 4
No 129
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.73 E-value=7.9e-18 Score=103.38 Aligned_cols=71 Identities=14% Similarity=0.109 Sum_probs=66.6
Q ss_pred eeecCCChhhh---HHHHhccCCC---eeEEEEEc-cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSD---AEICVFLI-STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARP 73 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~---v~~~~~~~-~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~ 73 (136)
|||+|||..+| |+++|++||. |.++.++. ..|+++|||||+|.+.++|++|+. +|+..+.|+.|+|.++.+
T Consensus 20 l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~~ 97 (118)
T 2db1_A 20 VKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVFKSHR 97 (118)
T ss_dssp EEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEEEECH
T ss_pred EEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEEECCH
Confidence 89999999999 9999999999 89999998 669999999999999999999999 999999999999988753
No 130
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.73 E-value=3.9e-18 Score=107.08 Aligned_cols=71 Identities=15% Similarity=0.114 Sum_probs=66.6
Q ss_pred eeecCCChhhh---HHHHhccCCC---eeEEEEEc-cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSD---AEICVFLI-STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARP 73 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~---v~~~~~~~-~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~ 73 (136)
|||+|||..+| |+++|++||. |.+|.+++ ..|+++|||||+|.+.++|++|+. +|+..+.|+.|+|.++.+
T Consensus 47 lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~~a~~ 124 (136)
T 2hgl_A 47 VKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVFKSHR 124 (136)
T ss_dssp EEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEEECCH
T ss_pred EEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEEECCh
Confidence 89999999999 9999999999 88999998 669999999999999999999999 999999999999988753
No 131
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.73 E-value=6.2e-18 Score=100.99 Aligned_cols=69 Identities=16% Similarity=0.235 Sum_probs=64.6
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPS 74 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~ 74 (136)
|||+|||..++ |+++|++||.|.++.+.+ ++|||||+|.+.++|+.|+..+||..+.|+.|+|.+++++
T Consensus 30 l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 30 AYIGNIPHFATEADLIPLFQNFGFILDFKHYP----EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKER 101 (101)
T ss_dssp EEEESCCTTCCHHHHHHHHHTTSCCSEEEEET----TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCCC
T ss_pred EEEcCCCcccCHHHHHHHHHhCCCEEEEEEec----CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccCC
Confidence 89999999998 999999999999999874 7899999999999999999999999999999999998763
No 132
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.1e-17 Score=101.31 Aligned_cols=70 Identities=19% Similarity=0.235 Sum_probs=65.0
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc-cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI-STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARP 73 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~-~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~ 73 (136)
|||+|||..++ |+++|++| .|.+|.++. ..|+++|||||+|.+.++|++|+ .+|+..++||.|.|..+.+
T Consensus 19 v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 19 VSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp EEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred EEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 89999999998 99999999 889999998 67999999999999999999999 5999999999999987653
No 133
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.73 E-value=3.7e-18 Score=115.91 Aligned_cols=72 Identities=18% Similarity=0.183 Sum_probs=68.7
Q ss_pred eeecCCChhhh---HHHHhccCC--CeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFS--DAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARP 73 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G--~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~ 73 (136)
|||+|||..+| |+++|++|| .|.+|.|++ .+++++|||||+|.+.++|++|+..||+..|.|+.|+|.++.+
T Consensus 71 lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a~~ 149 (229)
T 3q2s_C 71 LYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPVNK 149 (229)
T ss_dssp EEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEECCH
T ss_pred EEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEECCC
Confidence 89999999998 999999999 999999998 6899999999999999999999999999999999999998764
No 134
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.73 E-value=1.9e-17 Score=102.76 Aligned_cols=71 Identities=17% Similarity=0.296 Sum_probs=64.7
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEccCCCceee-EEEEcCCHHHHHHHHHHHcCceeCC--ceEEEEeeCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLISTAQSLGY-GFVNYHRPEDAEKAINTLNGLRLQN--KTIKVSYARPSS 75 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~~~~~~kg~-~fv~f~~~~~a~~a~~~~~~~~~~g--~~l~v~~~~~~~ 75 (136)
|||+||+..+| |+++|++||+|.+|.++. +++|+ |||+|.+.++|+.|++.|||..+.| +.|+|.++++..
T Consensus 31 I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~---~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~~ 107 (130)
T 3zzy_A 31 IIVENLFYPVTLDVLHQIFSKFGTVLKIITFT---KNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 107 (130)
T ss_dssp EEEESCCSCCCHHHHHHHHTTSSCEEEEEEEE---ETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCSS
T ss_pred EEECCCCCCCCHHHHHHHHhCcCCEEEEEEEc---CCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCCc
Confidence 78999999998 999999999999998876 34677 9999999999999999999999988 899999998754
No 135
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=2.6e-17 Score=96.31 Aligned_cols=70 Identities=23% Similarity=0.362 Sum_probs=65.2
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSES 77 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~~ 77 (136)
|||+|||..++ |+++|++||+|.++.++ +|||||+|.+.++|+.|+..+|+..+.|++|+|.++.++...
T Consensus 11 l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 83 (90)
T 2dnq_A 11 LFIGNLPREATEQEIRSLFEQYGKVLECDII------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSKA 83 (90)
T ss_dssp EEEESCCSSCCHHHHHHHHHTSSCEEEEEEE------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCCCC
T ss_pred EEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCCCC
Confidence 79999999998 99999999999999987 489999999999999999999999999999999999877653
No 136
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=3.3e-17 Score=96.25 Aligned_cols=70 Identities=21% Similarity=0.302 Sum_probs=64.9
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSES 77 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~~ 77 (136)
|||+|||..++ |+++|++||.|.++.+++ +||||+|.+.++|++|+..|||..+.|+.|+|.++.++...
T Consensus 13 l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 85 (92)
T 2dgt_A 13 LHVGNISPTCTNQELRAKFEEYGPVIECDIVK------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRT 85 (92)
T ss_dssp EEEESCCSSCCHHHHHHHHHTTSCCCEEEECS------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCCCSC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCCCCC
Confidence 79999999998 999999999999999864 59999999999999999999999999999999999877543
No 137
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.1e-17 Score=101.74 Aligned_cols=69 Identities=13% Similarity=0.105 Sum_probs=64.2
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPS 74 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~ 74 (136)
|||+|||..++ |+++|++||.|..+.++. ++|||||+|.+.++|+.|+..|||..+.|++|.|.++...
T Consensus 13 l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 13 ILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE----GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp EEEESCCTTCCHHHHHHHHHTTSCEEEEECCS----SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC----CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 79999999998 999999999999998764 7899999999999999999999999999999999998754
No 138
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.5e-17 Score=96.20 Aligned_cols=67 Identities=18% Similarity=0.297 Sum_probs=62.9
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHH-cCceeCCceEEEEeeC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTL-NGLRLQNKTIKVSYAR 72 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~-~~~~~~g~~l~v~~~~ 72 (136)
|||+|||..++ |+++|++||+|.++.+++ ++|||||+|.+.++|+.|+..| ||..+.|++|+|.+++
T Consensus 15 l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~----~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 15 LYVGGLGDTITETDLRNHFYQFGEIRTITVVQ----RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp EEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG----GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred EEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC----CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 89999999998 999999999999999886 6899999999999999999998 9999999999999874
No 139
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.73 E-value=1.5e-18 Score=98.29 Aligned_cols=69 Identities=14% Similarity=0.232 Sum_probs=64.1
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEee
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYA 71 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~ 71 (136)
|||+|||..++ |+++|++||+|.++.++. .++.++|||||+|.+.++|+.|+.. ++..+.|+++.+.++
T Consensus 2 l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 2 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp EEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 79999999998 999999999999999888 6789999999999999999999994 899999999998764
No 140
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=7.9e-18 Score=99.88 Aligned_cols=71 Identities=23% Similarity=0.313 Sum_probs=64.3
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSS 75 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~ 75 (136)
|||+|||..++ |+++|++||.|. +.++ +++++|||||+|.+.++|+.|+..|||..+.|++|.|.++.++.
T Consensus 22 l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 95 (97)
T 2e5j_A 22 VYVGNLPRDARVSDLKRALRELGSVP-LRLT--WQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQR 95 (97)
T ss_dssp EEEECCCTTCCHHHHHHHHHHTTCCC-SEEE--EETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCCC
T ss_pred EEEeCCCCcCcHHHHHHHHHhcCCEE-EEEE--cCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCC
Confidence 79999999998 999999999986 5554 35788999999999999999999999999999999999998764
No 141
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.9e-17 Score=100.19 Aligned_cols=71 Identities=23% Similarity=0.357 Sum_probs=66.3
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~ 76 (136)
|||+|||..++ |+++|++||.|.++.+++ .+|||||+|.+.++|+.|+..|||..+.|++|+|.++.++..
T Consensus 28 l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 101 (109)
T 1x4g_A 28 VYCGGIASGLTDQLMRQTFSPFGQIMEIRVFP----EKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPD 101 (109)
T ss_dssp EEEECCSSCCCHHHHHHHHHHHSCEEEEEEET----TTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCCS
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeC----CCCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCCC
Confidence 89999999998 999999999999999886 389999999999999999999999999999999999987654
No 142
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2e-18 Score=105.39 Aligned_cols=76 Identities=18% Similarity=0.294 Sum_probs=66.6
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~ 76 (136)
|||+|||..++ |+++|++||.|..+.+.. .+++++|||||+|.+.++|+.|+..|||..+.|++|.|.++.++..
T Consensus 28 l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~ 107 (115)
T 2cpx_A 28 LYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGKNKKQ 107 (115)
T ss_dssp EEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECCCCSC
T ss_pred EEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEccCCCC
Confidence 89999999998 999999999984432222 5789999999999999999999999999999999999999987765
Q ss_pred C
Q psy6353 77 S 77 (136)
Q Consensus 77 ~ 77 (136)
.
T Consensus 108 ~ 108 (115)
T 2cpx_A 108 R 108 (115)
T ss_dssp C
T ss_pred C
Confidence 3
No 143
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.72 E-value=8.7e-18 Score=99.42 Aligned_cols=72 Identities=15% Similarity=0.303 Sum_probs=65.9
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~ 76 (136)
|||+|||..++ |+++|++||.|..+ ..+++++|||||+|.+.++|+.|+..+||..+.|++|.|.++.++..
T Consensus 19 l~V~nL~~~~t~~~l~~~F~~~g~v~~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 93 (96)
T 1fjc_A 19 LLAKNLSFNITEDELKEVFEDALEIRLV---SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGG 93 (96)
T ss_dssp EEEESCCSSCCHHHHHHHHCSEEEECCE---EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSSCC
T ss_pred EEEeCCCCCCCHHHHHHHHhhCCcEEEe---CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCCC
Confidence 89999999998 99999999988766 46788999999999999999999999999999999999999987654
No 144
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.72 E-value=3.2e-17 Score=99.15 Aligned_cols=69 Identities=20% Similarity=0.394 Sum_probs=64.2
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~ 76 (136)
|||+|||..++ |+++|++||.|.++.++ +|||||+|.+.++|+.|+..|||..+.|+.|.|.++.+...
T Consensus 34 l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 105 (108)
T 2jvo_A 34 LFVRPFPLDVQESELNEIFGPFGPMKEVKIL------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLPAK 105 (108)
T ss_dssp EEECSSCTTCCHHHHHHHHTTTSCCCEEEEE------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCCC-
T ss_pred EEEECCCCCCCHHHHHHHHHhcCCEEEEEEE------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCCCC
Confidence 79999999998 99999999999999986 69999999999999999999999999999999999987643
No 145
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.7e-18 Score=106.25 Aligned_cols=71 Identities=18% Similarity=0.149 Sum_probs=65.0
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEE-EEEc-cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEIC-VFLI-STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARP 73 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~-~~~~-~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~ 73 (136)
|||+|||..++ |+++|++||.|.++ .+.. .+|+++|||||+|.+.++|++|+. +||..+.|+.|.|.++.+
T Consensus 28 l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~~ 103 (124)
T 1wel_A 28 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPITK 103 (124)
T ss_dssp EEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEECH
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECCH
Confidence 89999999998 99999999999884 4444 889999999999999999999999 999999999999998864
No 146
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=3.7e-17 Score=98.83 Aligned_cols=70 Identities=21% Similarity=0.222 Sum_probs=65.3
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCC-----ceEEEEeeCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQN-----KTIKVSYARP 73 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g-----~~l~v~~~~~ 73 (136)
|||+|||..++ |+++|++||+|..+.++.. |||||+|.+.++|+.|+..|||..+.| ++|+|.++.+
T Consensus 18 l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-----g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~~ 92 (108)
T 1x4c_A 18 VVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGP 92 (108)
T ss_dssp EEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-----TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESSC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-----CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCCC
Confidence 89999999998 9999999999999999862 999999999999999999999999999 9999999987
Q ss_pred CCC
Q psy6353 74 SSE 76 (136)
Q Consensus 74 ~~~ 76 (136)
+..
T Consensus 93 ~~~ 95 (108)
T 1x4c_A 93 RSP 95 (108)
T ss_dssp CSC
T ss_pred CCC
Confidence 654
No 147
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.72 E-value=5.1e-17 Score=104.34 Aligned_cols=72 Identities=22% Similarity=0.431 Sum_probs=68.2
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARP 73 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~ 73 (136)
|||+|||..++ |+++|++||.|.++.++. .+|.++|||||+|.+.++|.+|+..+||..+.|++|+|.++++
T Consensus 90 l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 90 LFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 166 (166)
T ss_dssp EEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred EEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecCC
Confidence 79999999998 999999999999999988 7899999999999999999999999999999999999999863
No 148
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.71 E-value=2.3e-17 Score=110.69 Aligned_cols=74 Identities=26% Similarity=0.473 Sum_probs=68.9
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSS 75 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~ 75 (136)
|||+|||..++ |+++|++||.|.++.+++..+.++|||||+|.+.++|++|+.+|||..++|++|.|.++.++.
T Consensus 106 l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~~ 182 (213)
T 4f02_A 106 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 182 (213)
T ss_dssp EEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCHH
T ss_pred ceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCCc
Confidence 79999999998 999999999999999988555689999999999999999999999999999999999988754
No 149
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=3.9e-17 Score=95.55 Aligned_cols=69 Identities=22% Similarity=0.340 Sum_probs=64.4
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~ 76 (136)
|||+|||..++ |+++|++||.|.++.+++ +||||+|.+.++|+.|+..|||..+.|++|+|.++.+...
T Consensus 12 l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 83 (90)
T 2dnp_A 12 IFVGNVSAACTSQELRSLFERRGRVIECDVVK------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQK 83 (90)
T ss_dssp EEEESCCTTCCHHHHHHHHHHHSCEEEEEECS------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred EEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCCC
Confidence 89999999998 999999999999999864 5999999999999999999999999999999999987654
No 150
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.71 E-value=1.7e-17 Score=105.81 Aligned_cols=71 Identities=21% Similarity=0.306 Sum_probs=66.5
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSS 75 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~ 75 (136)
|||+|||..++ |+++|++||.|.++.+++ .++|||||+|.+.++|+.|+..|||..+.|++|+|.++.++.
T Consensus 76 l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~---~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 76 VYVGNLGNNGNKTELERAFGYYGPLRSVWVAR---NPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp EEEESCCSCCSCHHHHHHHHHHSCEEEEEECS---SSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred EEEeCCCCCCCHHHHHHHHHhhCCEEEEEEee---CCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 89999999998 999999999999999876 378999999999999999999999999999999999998764
No 151
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.71 E-value=4.6e-17 Score=97.55 Aligned_cols=70 Identities=26% Similarity=0.476 Sum_probs=64.8
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSES 77 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~~ 77 (136)
|||+|||..++ |+++|++||.|.++.+++ |||||+|.+.++|++|+..||+..+.|++|.|.++.++...
T Consensus 14 l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 86 (103)
T 2dgu_A 14 LFVRNLANTVTEEILEKAFSQFGKLERVKKLK------DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQK 86 (103)
T ss_dssp EEEECCCTTCCHHHHHHHHHHHSCEEEEEECS------SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCCCC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC------CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCccc
Confidence 89999999998 999999999999998864 79999999999999999999999999999999999876543
No 152
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.71 E-value=1.2e-18 Score=104.11 Aligned_cols=73 Identities=21% Similarity=0.332 Sum_probs=66.5
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~ 76 (136)
|||+|||..++ |+++|++||.|.. .++. .+++++|||||+|.+.++|++|+. +||..+.|+.|.|.++.++..
T Consensus 20 l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~~~~~ 97 (101)
T 1fj7_A 20 LFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKGRDG 97 (101)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCSCCCC
T ss_pred EEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcCCCCC
Confidence 79999999999 9999999999887 4444 678999999999999999999998 999999999999999987654
No 153
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.55 E-value=6.7e-19 Score=107.79 Aligned_cols=76 Identities=20% Similarity=0.260 Sum_probs=70.0
Q ss_pred eeecCCChhhh---HHHHhccCCCeeE--------EEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEE
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEI--------CVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKV 68 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~--------~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v 68 (136)
|||+|||..++ |+++|++||.|.. +.++. .+++++|||||+|.+.++|+.|+..|||..+.|++|.|
T Consensus 10 l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 89 (116)
T 2lcw_A 10 IFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKV 89 (116)
Confidence 79999999998 9999999999988 87877 67899999999999999999999999999999999999
Q ss_pred EeeCCCCCC
Q psy6353 69 SYARPSSES 77 (136)
Q Consensus 69 ~~~~~~~~~ 77 (136)
.++.++...
T Consensus 90 ~~a~~~~~~ 98 (116)
T 2lcw_A 90 SFATRRADF 98 (116)
Confidence 999876543
No 154
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=1.3e-16 Score=95.30 Aligned_cols=73 Identities=22% Similarity=0.398 Sum_probs=64.7
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~ 76 (136)
|||+|||..++ |+++|+.|+ .+.++. .+++++|||||+|.+.++|+.|+..|||..+.|+.|.|.++.++..
T Consensus 18 l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 94 (102)
T 2fc8_A 18 LFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGE 94 (102)
T ss_dssp EEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCCCS
T ss_pred EEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCCCC
Confidence 89999999998 777777663 666666 6899999999999999999999999999999999999999998765
Q ss_pred C
Q psy6353 77 S 77 (136)
Q Consensus 77 ~ 77 (136)
.
T Consensus 95 ~ 95 (102)
T 2fc8_A 95 G 95 (102)
T ss_dssp S
T ss_pred C
Confidence 3
No 155
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.71 E-value=1.2e-17 Score=99.90 Aligned_cols=72 Identities=18% Similarity=0.323 Sum_probs=67.4
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc-cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI-STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSS 75 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~-~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~ 75 (136)
|||+|||..++ |+++|++||.|.++.++. .+|+++|||||+|.+.++|+.|+. ++..++|+.|.|.++.++.
T Consensus 12 l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~~~~ 87 (102)
T 2xs2_A 12 VFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAIRKQ 87 (102)
T ss_dssp EEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEEECC
T ss_pred EEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECCcCc
Confidence 79999999998 999999999999999999 889999999999999999999999 8999999999998887654
No 156
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.3e-16 Score=94.90 Aligned_cols=69 Identities=29% Similarity=0.393 Sum_probs=63.8
Q ss_pred eeecCCChhhh---HHHHhccC--CCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGF--SDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~--G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~ 76 (136)
|||+|||..++ |+++|++| |.|..+.++ +|||||+|.+.++|+.|+..|||..+.|++|+|.++.++..
T Consensus 18 l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 91 (99)
T 2cpd_A 18 LYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPVDK 91 (99)
T ss_dssp EEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCCCCC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCC
Confidence 89999999998 99999999 899888764 58999999999999999999999999999999999988754
No 157
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.70 E-value=2e-17 Score=104.68 Aligned_cols=74 Identities=22% Similarity=0.293 Sum_probs=65.9
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEE------EEEc-cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEee
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEIC------VFLI-STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYA 71 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~------~~~~-~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~ 71 (136)
|||+|||..++ |+++|++||.|..+ .+.. .+|+++|||||+|.+.++|..|+..|||..+.|++|.|.++
T Consensus 48 l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 127 (143)
T 3egn_A 48 IYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFA 127 (143)
T ss_dssp EEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECEEEEC
T ss_pred EEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 89999999998 99999999998764 1222 67899999999999999999999999999999999999999
Q ss_pred CCCC
Q psy6353 72 RPSS 75 (136)
Q Consensus 72 ~~~~ 75 (136)
.+..
T Consensus 128 ~~~~ 131 (143)
T 3egn_A 128 RSAR 131 (143)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 7654
No 158
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.70 E-value=2.7e-17 Score=107.64 Aligned_cols=74 Identities=18% Similarity=0.274 Sum_probs=69.9
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc-cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI-STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSS 75 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~-~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~ 75 (136)
|||+|||..++ |+++|++||+|.+|.++. .++.++|||||+|.+.++|+.|+..+||..+.|++|+|.++.+..
T Consensus 91 l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~~~~ 168 (177)
T 2f3j_A 91 LLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQI 168 (177)
T ss_dssp EEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEESSGG
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEecCCC
Confidence 89999999988 999999999999999998 889999999999999999999999999999999999999987653
No 159
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.70 E-value=7.9e-17 Score=95.63 Aligned_cols=68 Identities=10% Similarity=0.155 Sum_probs=63.0
Q ss_pred eeecCCCh-hhh---HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCC
Q psy6353 2 VYQTLLNK-LFT---YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSS 75 (136)
Q Consensus 2 v~v~nl~~-~~~---l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~ 75 (136)
|||+|||. .++ |+++|++||.|.++.+. +|||||+|.+.++|+.|+..+||..+.|++|+|.++.++.
T Consensus 25 l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 96 (97)
T 2xnq_A 25 LFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSSNA 96 (97)
T ss_dssp EEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCCCC
T ss_pred EEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCCCC
Confidence 79999997 888 99999999999999873 6999999999999999999999999999999999987653
No 160
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.70 E-value=3e-17 Score=105.51 Aligned_cols=72 Identities=17% Similarity=0.242 Sum_probs=65.3
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCC--ceEEEEeeCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQN--KTIKVSYARPSS 75 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g--~~l~v~~~~~~~ 75 (136)
|||+||+..++ |+++|++||+|.+|.+.. +.++|||||+|.+.++|+.|+..|||..|.| ++|+|.+++++.
T Consensus 49 l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~--k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~~ 125 (164)
T 1sjr_A 49 IIVENLFYPVTLDVLHQIFSKFGTVLKIITFT--KNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 125 (164)
T ss_dssp EEECSCCSCCCHHHHHHHHHHHSCEEEEEEEE--SSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSSS
T ss_pred EEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEe--CCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCCc
Confidence 79999999988 999999999999999864 3367999999999999999999999999965 999999998764
No 161
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=1.4e-17 Score=102.93 Aligned_cols=71 Identities=18% Similarity=0.099 Sum_probs=65.0
Q ss_pred eeecCCChhhh---HHHHhccCCCe----eEEEEEc-cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDA----EICVFLI-STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARP 73 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v----~~~~~~~-~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~ 73 (136)
|||+|||..+| |+++|++||+| ..|.++. .+|+++|||||+|.+.++|++|+.. |+..++|+.|.|..+.+
T Consensus 26 v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V~~a~~ 104 (123)
T 2dha_A 26 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIELFRSTA 104 (123)
T ss_dssp EEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECCEEECH
T ss_pred EEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEECCH
Confidence 89999999998 99999999975 6899988 8899999999999999999999996 99999999999887643
No 162
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.70 E-value=6.4e-18 Score=102.06 Aligned_cols=71 Identities=13% Similarity=0.114 Sum_probs=66.2
Q ss_pred eeecCCChhhh---HHHHhccCCC---eeEEEEEc-cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSD---AEICVFLI-STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARP 73 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~---v~~~~~~~-~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~ 73 (136)
|||+|||..+| |+++|++||. |.++.++. ..|+++|||||+|.+.++|++|+. +|+..++|+.|.|.++.+
T Consensus 14 l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~a~~ 91 (107)
T 2lmi_A 14 IRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVYEINN 91 (107)
T ss_dssp EEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCEECCH
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEEECCH
Confidence 89999999999 9999999998 89999998 569999999999999999999999 999999999999988764
No 163
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.70 E-value=1.1e-16 Score=107.01 Aligned_cols=75 Identities=19% Similarity=0.413 Sum_probs=70.6
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~ 76 (136)
|||+|||..++ |+++|++||.|..+.+++ .+|+++|||||+|.+.++|.+|+..|||..++|++|.|.++.++..
T Consensus 128 l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~~ 207 (216)
T 2qfj_A 128 IYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPM 207 (216)
T ss_dssp EEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSCSS
T ss_pred EEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCCCC
Confidence 79999999998 999999999999999998 6899999999999999999999999999999999999999987653
No 164
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=4.6e-17 Score=95.79 Aligned_cols=71 Identities=28% Similarity=0.360 Sum_probs=63.8
Q ss_pred eeecCCChhhh---HHHHhccCCC-eeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcC-ceeCCceEEEEeeCCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSD-AEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNG-LRLQNKTIKVSYARPSSE 76 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~-v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~-~~~~g~~l~v~~~~~~~~ 76 (136)
|||+|||..++ |+++|++||. +..+.+. ++|||||+|.+.++|+.|+..+|| ..+.|++|+|.++.++..
T Consensus 11 l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~~~ 85 (93)
T 2cqh_A 11 LYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-----KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSKKL 85 (93)
T ss_dssp EEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-----ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCCCC
T ss_pred EEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-----CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCccc
Confidence 89999999998 9999999999 6666553 589999999999999999999999 999999999999988754
Q ss_pred C
Q psy6353 77 S 77 (136)
Q Consensus 77 ~ 77 (136)
.
T Consensus 86 ~ 86 (93)
T 2cqh_A 86 R 86 (93)
T ss_dssp C
T ss_pred c
Confidence 3
No 165
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.70 E-value=1.1e-16 Score=98.89 Aligned_cols=70 Identities=24% Similarity=0.240 Sum_probs=63.1
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEccCCCceee-EEEEcCCHHHHHHHHHHHcCceeCC--ceEEEEeeCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLISTAQSLGY-GFVNYHRPEDAEKAINTLNGLRLQN--KTIKVSYARPSS 75 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~~~~~~kg~-~fv~f~~~~~a~~a~~~~~~~~~~g--~~l~v~~~~~~~ 75 (136)
|||+||+..++ |+++|++||.|.+|.+.. + .|+ |||+|.+.++|+.|+..|||..|.| ++|+|.+++++.
T Consensus 28 l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~---~-~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 28 LSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK---R-NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTR 103 (124)
T ss_dssp EEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE---S-SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSC
T ss_pred EEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe---C-CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCc
Confidence 78999999988 999999999999999865 2 386 9999999999999999999999987 689999998764
No 166
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.69 E-value=7.6e-17 Score=104.31 Aligned_cols=71 Identities=24% Similarity=0.371 Sum_probs=67.4
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR 72 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~ 72 (136)
|||+|||..++ |+++|++||+|.++.+++ .+|.++|||||+|.+.++|++|+..|||..++|++|.|.++.
T Consensus 97 l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 97 LFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp EEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred EEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 89999999998 999999999999999988 589999999999999999999999999999999999999863
No 167
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.69 E-value=5.7e-17 Score=119.17 Aligned_cols=74 Identities=15% Similarity=0.302 Sum_probs=70.3
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSS 75 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~ 75 (136)
|||+|||..+| |.++|++||.|..|.|+. .+++++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.+..
T Consensus 105 lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~~~~ 183 (437)
T 3pgw_S 105 LFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRT 183 (437)
T ss_pred EEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeCCCC
Confidence 89999999998 999999999999999988 689999999999999999999999999999999999999998654
No 168
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.69 E-value=6.8e-17 Score=95.66 Aligned_cols=69 Identities=10% Similarity=0.170 Sum_probs=63.7
Q ss_pred eeecCCCh-hhh---HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCC
Q psy6353 2 VYQTLLNK-LFT---YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76 (136)
Q Consensus 2 v~v~nl~~-~~~---l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~ 76 (136)
|||+|||. .++ |+++|++||+|.++.+. +|||||+|.+.++|+.|+..|||..+.|++|.|.++.+...
T Consensus 13 l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 85 (96)
T 2kvi_A 13 LFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSNAR 85 (96)
T ss_dssp EEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECCCC
T ss_pred EEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcCCC
Confidence 79999998 888 99999999999999884 59999999999999999999999999999999999876644
No 169
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=5.7e-17 Score=94.52 Aligned_cols=67 Identities=15% Similarity=0.157 Sum_probs=60.8
Q ss_pred eeecCCChhhh-------HHHHhccCC-CeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCC
Q psy6353 2 VYQTLLNKLFT-------YEKVHLGFS-DAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARP 73 (136)
Q Consensus 2 v~v~nl~~~~~-------l~~~f~~~G-~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~ 73 (136)
|||.|||..++ |+++|++|| +|.+| ++ |+|||.|.+.++|++|++.|||..+.||+|+|.+++.
T Consensus 12 lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-----tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~ 83 (96)
T 2diu_A 12 LYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-----TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPK 83 (96)
T ss_dssp EEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-----CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCC
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-----ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCC
Confidence 79999999998 668999995 99888 23 9999999999999999999999999999999999987
Q ss_pred CCC
Q psy6353 74 SSE 76 (136)
Q Consensus 74 ~~~ 76 (136)
+.+
T Consensus 84 ~sd 86 (96)
T 2diu_A 84 NRE 86 (96)
T ss_dssp SCC
T ss_pred Ccc
Confidence 654
No 170
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.69 E-value=3.3e-17 Score=105.56 Aligned_cols=72 Identities=17% Similarity=0.379 Sum_probs=68.3
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPS 74 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~ 74 (136)
|||+|||..++ |+++|++||.|.++.++. .+|.++|||||+|.+.++|++|+. +||..+.|++|.|.++.|+
T Consensus 90 l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 90 IFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp EEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCCC
T ss_pred EEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCCC
Confidence 79999999998 999999999999999988 679999999999999999999998 8999999999999999876
No 171
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.69 E-value=5e-17 Score=99.93 Aligned_cols=72 Identities=11% Similarity=0.077 Sum_probs=63.3
Q ss_pred eeecCC----Chhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCC----HHH----HHHHHH--HHcCceeC
Q psy6353 2 VYQTLL----NKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHR----PED----AEKAIN--TLNGLRLQ 62 (136)
Q Consensus 2 v~v~nl----~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~----~~~----a~~a~~--~~~~~~~~ 62 (136)
|||+|| |..++ |+++|++||+|.++.++. .||.++|||||+|.+ +++ |..|+. .+||..+.
T Consensus 5 I~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~I~ 84 (136)
T 2j8a_A 5 IVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCFIM 84 (136)
T ss_dssp EEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEEET
T ss_pred EEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCeec
Confidence 799999 99888 999999999999999999 899999999999996 433 778877 78999999
Q ss_pred CceEEEEeeCC
Q psy6353 63 NKTIKVSYARP 73 (136)
Q Consensus 63 g~~l~v~~~~~ 73 (136)
|++|+|...+.
T Consensus 85 Gr~irV~ln~~ 95 (136)
T 2j8a_A 85 GFKFEVILNKH 95 (136)
T ss_dssp TEEEEEEECCT
T ss_pred CcEEEEEECcc
Confidence 99999987653
No 172
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.69 E-value=7.6e-17 Score=97.68 Aligned_cols=68 Identities=25% Similarity=0.388 Sum_probs=63.3
Q ss_pred eeecCCChh-hh---HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCC
Q psy6353 2 VYQTLLNKL-FT---YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSS 75 (136)
Q Consensus 2 v~v~nl~~~-~~---l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~ 75 (136)
|||+|||.. ++ |+++|++||+|.++.+ ++|||||+|.+.++|+.|+..|||..+.|++|+|.++.+..
T Consensus 30 l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 101 (110)
T 1wf1_A 30 VFIGNLNTALVKKSDVETIFSKYGRVAGCSV------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEPK 101 (110)
T ss_dssp EEECSCCCSSCCHHHHHHHHGGGSCCSEEEE------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCCC
T ss_pred EEEeCCCcccCCHHHHHHHHHhCCCeEEEEE------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCCC
Confidence 799999998 87 9999999999999988 56999999999999999999999999999999999998544
No 173
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.68 E-value=1.2e-16 Score=105.52 Aligned_cols=75 Identities=23% Similarity=0.356 Sum_probs=70.6
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~ 76 (136)
|||+|||..++ |+++|++||.|.++.+++ .+|.++|||||+|.+.++|+.|+..|||..+.|++|.|.++.++..
T Consensus 117 l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 117 LFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp EEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred EEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 79999999988 999999999999999988 5899999999999999999999999999999999999999988654
No 174
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.68 E-value=1.4e-17 Score=104.97 Aligned_cols=72 Identities=15% Similarity=0.090 Sum_probs=66.2
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc-cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI-STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSS 75 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~-~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~ 75 (136)
|||+|||..+| |+++|++|| +.+|.++. .+++++|||||+|.+.++|++|+ ++|+..+.|+.|.|..+.+..
T Consensus 49 lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~~ 124 (139)
T 2hgn_A 49 VHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTTG 124 (139)
T ss_dssp EECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCSC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCCC
Confidence 89999999999 999999999 66999988 66999999999999999999999 689999999999998887654
No 175
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.68 E-value=1.6e-16 Score=92.56 Aligned_cols=68 Identities=16% Similarity=0.221 Sum_probs=63.3
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPS 74 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~ 74 (136)
|||+|||..++ |+++|++| +|.++.+. +++|||||+|.+.++|+.|+..+||..+.|++|+|.++...
T Consensus 8 l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 78 (88)
T 1wg1_A 8 ILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD 78 (88)
T ss_dssp EEEESCCSSCCHHHHHHHTCSS-CCCCEEEE----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred EEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCC
Confidence 89999999998 99999999 99999885 68999999999999999999999999999999999998654
No 176
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.67 E-value=2.3e-16 Score=104.03 Aligned_cols=75 Identities=11% Similarity=0.217 Sum_probs=66.6
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~ 76 (136)
|||+|||..++ |+++|++||.|..+.++. .+|.++|||||+|.+.++|.+|+.. +|..+.|+.|.|.++.++.+
T Consensus 107 l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~k~~ 185 (196)
T 1l3k_A 107 IFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQE 185 (196)
T ss_dssp EEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC----
T ss_pred EEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecCChhH
Confidence 79999999998 999999999999999998 5899999999999999999999986 89999999999999988765
Q ss_pred C
Q psy6353 77 S 77 (136)
Q Consensus 77 ~ 77 (136)
.
T Consensus 186 ~ 186 (196)
T 1l3k_A 186 M 186 (196)
T ss_dssp -
T ss_pred h
Confidence 3
No 177
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.1e-16 Score=97.20 Aligned_cols=70 Identities=19% Similarity=0.217 Sum_probs=62.0
Q ss_pred eee--cCCChhhh---HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCcee-----CCceEEEEee
Q psy6353 2 VYQ--TLLNKLFT---YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRL-----QNKTIKVSYA 71 (136)
Q Consensus 2 v~v--~nl~~~~~---l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~-----~g~~l~v~~~ 71 (136)
||| +||+..++ |+++|++||.|.++.++. ++|||||+|.+.++|++|+.+|||..+ .|++|.+.++
T Consensus 28 L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~----~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~a 103 (114)
T 2cq2_A 28 LVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFV 103 (114)
T ss_dssp EEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT----TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEEE
T ss_pred EEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEec
Confidence 799 67999888 999999999999987753 489999999999999999999999988 6889999887
Q ss_pred CCCC
Q psy6353 72 RPSS 75 (136)
Q Consensus 72 ~~~~ 75 (136)
...+
T Consensus 104 ~~~p 107 (114)
T 2cq2_A 104 EKVQ 107 (114)
T ss_dssp SCCC
T ss_pred ccCc
Confidence 7544
No 178
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.67 E-value=9.8e-18 Score=105.26 Aligned_cols=98 Identities=18% Similarity=0.241 Sum_probs=58.9
Q ss_pred eeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCCCCCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCC
Q psy6353 37 GYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116 (136)
Q Consensus 37 g~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~ 116 (136)
-++|.++.+...+..|+..++|-...|+. ...+..+.......++|||+|||..+|+++|+++|++||.|..+.++.++
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~~-~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~ 83 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRG-SMSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDR 83 (135)
T ss_dssp -------------------------------CCSCCSCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCS
T ss_pred ccccccccCCCchhhhhhhccCCCCCCCC-CCCcCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecC
Confidence 35778888888888899888876655543 33455666666678899999999999999999999999999999999998
Q ss_pred CCCCc-cceEeecCcccccc
Q psy6353 117 LATEN-GKYYSGLGGRERLR 135 (136)
Q Consensus 117 ~~~~~-~~~fv~f~~~e~~~ 135 (136)
.++.. +.+||+|.+.|+|.
T Consensus 84 ~~g~~~G~afV~F~~~~~A~ 103 (135)
T 2lea_A 84 YTKESRGFAFVRFHDKRDAE 103 (135)
T ss_dssp SSSSCCSCCEEECSCHHHHH
T ss_pred CCCccceEEEEEECCHHHHH
Confidence 77776 55999999999875
No 179
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.67 E-value=2.4e-16 Score=92.12 Aligned_cols=68 Identities=15% Similarity=0.248 Sum_probs=56.8
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCce--eCCceEEEEeeCCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLR--LQNKTIKVSYARPSSE 76 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~--~~g~~l~v~~~~~~~~ 76 (136)
|||+|||..++ |+++|++||+|.++.+++ .++|||||+|.+.++|++ +++.. +.|+.+.+.++.++..
T Consensus 14 l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~---~srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~~k~~ 86 (89)
T 3d2w_A 14 VFVGRCTEDMTAEELQQFFCQYGEVVDVFIPK---PFRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAEPKHN 86 (89)
T ss_dssp EEEESCCTTCCHHHHHHHHTTTSCEEEEECCS---SCCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC----
T ss_pred EEEeCCCCCCCHHHHHHHHhccCCEEEEEEee---CCCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcCCCCc
Confidence 79999999999 999999999999999876 589999999999999883 55544 5699999999987654
No 180
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.67 E-value=2.7e-16 Score=101.78 Aligned_cols=71 Identities=21% Similarity=0.352 Sum_probs=65.9
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc-cCCCceeeEEEEcCCHHHHHHHHHHHcCceeC---CceEEEEeeC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI-STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQ---NKTIKVSYAR 72 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~-~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~---g~~l~v~~~~ 72 (136)
|||+|||..++ |+++|++||.|.++.+++ .+|+++|||||+|.+.++|.+|+..|||..+. +++|.|.++.
T Consensus 98 l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 98 LFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp EEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred EEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 79999999998 999999999999999999 78999999999999999999999999998776 4999998863
No 181
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=6.5e-16 Score=91.55 Aligned_cols=71 Identities=23% Similarity=0.264 Sum_probs=62.5
Q ss_pred eeecCCChhhh-HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCC
Q psy6353 2 VYQTLLNKLFT-YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76 (136)
Q Consensus 2 v~v~nl~~~~~-l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~ 76 (136)
|||+||+-.-. |+++|++||+|.++.+. +++|||||+|.+.++|++|+..|||..+.|++|+|.++.++..
T Consensus 18 l~V~n~~~t~~~l~~~F~~~G~i~~v~i~----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~ 89 (97)
T 1x5p_A 18 LYVYGEDMTPTLLRGAFSPFGNIIDLSMD----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPM 89 (97)
T ss_dssp EEEECSSCCHHHHHHHHTTTSCEEEEEEE----TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSCCC
T ss_pred EEEcCCCCCHHHHHHHHhhCCCEEEEEec----CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCCC
Confidence 79999732222 99999999999999885 5789999999999999999999999999999999999987654
No 182
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.66 E-value=4.9e-16 Score=93.46 Aligned_cols=72 Identities=18% Similarity=0.227 Sum_probs=62.0
Q ss_pred eeecCCCh------hhh--HHHHhccCCCeeEEEEEc-c--CCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEe
Q psy6353 2 VYQTLLNK------LFT--YEKVHLGFSDAEICVFLI-S--TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY 70 (136)
Q Consensus 2 v~v~nl~~------~~~--l~~~f~~~G~v~~~~~~~-~--~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~ 70 (136)
|++.|+.. ... |++.|++||+|.++.+++ . +++++|+|||+|.+.++|++|+..|||..+.||+|.+.+
T Consensus 11 l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~v~~ 90 (105)
T 2pe8_A 11 VLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACF 90 (105)
T ss_dssp EEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred EEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEE
Confidence 56677752 122 899999999999999988 2 368999999999999999999999999999999999998
Q ss_pred eCC
Q psy6353 71 ARP 73 (136)
Q Consensus 71 ~~~ 73 (136)
+.+
T Consensus 91 a~~ 93 (105)
T 2pe8_A 91 YNL 93 (105)
T ss_dssp CCH
T ss_pred cCH
Confidence 764
No 183
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.66 E-value=3.6e-16 Score=103.56 Aligned_cols=71 Identities=15% Similarity=0.075 Sum_probs=65.5
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc-cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI-STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARP 73 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~-~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~ 73 (136)
|||+|||..++ |+++|++||+|.++.+++ .+++++|||||+|.+.++|+.|+..+ +..+.|++|.|.+...
T Consensus 112 l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 112 VYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp EEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred EEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 79999999998 999999999999999998 77999999999999999999999865 5699999999998764
No 184
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=3.7e-16 Score=92.11 Aligned_cols=70 Identities=10% Similarity=0.126 Sum_probs=61.9
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc-cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI-STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~-~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~ 76 (136)
|||+|||..++ |+++|++||+|.+| +.. .+++ ||||+|.+.++|++|+. +||..+.|+.|.|.++.++..
T Consensus 11 l~V~nl~~~~t~~~l~~~F~~~G~v~~v-~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~~~ 84 (94)
T 2e5g_A 11 VFVSGFPRGVDSAQLSEYFLAFGPVASV-VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQKEF 84 (94)
T ss_dssp EEEECCCTTCCHHHHHHHGGGTSCEEEE-EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCSCC
T ss_pred EEEECCCCCCCHHHHHHHHHhcCCeEEE-EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcCCC
Confidence 89999999998 99999999999988 433 4554 99999999999999999 999999999999998876543
No 185
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.65 E-value=6.2e-16 Score=99.53 Aligned_cols=70 Identities=26% Similarity=0.382 Sum_probs=65.7
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCC--ceEEEEee
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQN--KTIKVSYA 71 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g--~~l~v~~~ 71 (136)
|||+|||..++ |+++|++||.|..+.+++ .+++++|||||+|.+.++|..|+..+||..+.| ++|+|.++
T Consensus 92 l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 92 LYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp EEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred EEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 79999999998 999999999999999988 589999999999999999999999999999987 99999875
No 186
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.65 E-value=1.9e-16 Score=94.38 Aligned_cols=58 Identities=29% Similarity=0.455 Sum_probs=53.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCcc-ceEeecCcccccc
Q psy6353 78 IKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG-KYYSGLGGRERLR 135 (136)
Q Consensus 78 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~-~~fv~f~~~e~~~ 135 (136)
..+++|||+|||+++|+++|+++|++||+|.++++++|+.+|.++ .|||+|.+.|+|.
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~ 75 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAE 75 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHH
Confidence 357899999999999999999999999999999999999888875 5999999999875
No 187
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.65 E-value=3.5e-16 Score=95.56 Aligned_cols=69 Identities=22% Similarity=0.241 Sum_probs=60.7
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCce-----EEEEeeCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKT-----IKVSYARP 73 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~-----l~v~~~~~ 73 (136)
|||+|||..++ |+++|++||+|..+.++.. |||||+|.+.++|+.|++.|||..+.|+. +++..+.+
T Consensus 19 l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-----g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~~ 93 (115)
T 3beg_B 19 VVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGP 93 (115)
T ss_dssp EEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-----SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC-
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-----CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCCC
Confidence 89999999998 9999999999999998752 99999999999999999999999999988 77776665
Q ss_pred CC
Q psy6353 74 SS 75 (136)
Q Consensus 74 ~~ 75 (136)
..
T Consensus 94 ~~ 95 (115)
T 3beg_B 94 RS 95 (115)
T ss_dssp --
T ss_pred CC
Confidence 43
No 188
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.65 E-value=5.7e-16 Score=100.56 Aligned_cols=70 Identities=16% Similarity=0.313 Sum_probs=65.1
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPS 74 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~ 74 (136)
|||+|||..++ |+++|++||.|..+ ..++.++|||||+|.+.++|.+|+..|||..+.|++|.|.++.|+
T Consensus 102 l~v~nlp~~~t~~~l~~~F~~~g~v~~~---~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 102 LLAKNLSFNITEDELKEVFEDALEIRLV---SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp EEEESCCSSCCHHHHHHHCTTCSEEEEE---CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCeEEEe---cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 79999999998 99999999988766 577889999999999999999999999999999999999999876
No 189
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=3.2e-16 Score=95.58 Aligned_cols=67 Identities=12% Similarity=0.097 Sum_probs=56.9
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cC---CCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEee
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--ST---AQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYA 71 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~---~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~ 71 (136)
|||+|||..++ |+++|++||+|. +.++. .+ |+++|||||+|.+.++|++|+..++ .++|+.+.+..+
T Consensus 11 lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~~~~ 85 (114)
T 2dnl_A 11 VFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLCVSS 85 (114)
T ss_dssp EEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEEECC
T ss_pred EEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEeccC
Confidence 89999999998 999999999998 76666 34 7999999999999999999999883 366766666543
No 190
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.64 E-value=1e-16 Score=99.32 Aligned_cols=70 Identities=21% Similarity=0.185 Sum_probs=63.4
Q ss_pred eeecCCChhhh---HHHHhccCCCee--EEEEEc-cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAE--ICVFLI-STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARP 73 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~--~~~~~~-~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~ 73 (136)
|||+|||..+| |+++|++| .|. +|.++. ..|+++|||||+|.+.++|++|+.. ++..+.||.|.|..+.+
T Consensus 45 lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V~~a~~ 120 (126)
T 2hgm_A 45 VRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGHRYIEVFKSSQ 120 (126)
T ss_dssp EEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCCEEECH
T ss_pred EEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEEEECCH
Confidence 89999999999 99999999 566 899888 6699999999999999999999994 78999999999987754
No 191
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.64 E-value=3.1e-16 Score=94.20 Aligned_cols=59 Identities=22% Similarity=0.243 Sum_probs=54.2
Q ss_pred HHHHh-ccCCCeeEEEEEc-cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEee
Q psy6353 13 YEKVH-LGFSDAEICVFLI-STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYA 71 (136)
Q Consensus 13 l~~~f-~~~G~v~~~~~~~-~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~ 71 (136)
|++.| ++||+|.++.+++ .+++++|||||+|.+.++|++|+..|||..+.||+|.+.++
T Consensus 43 l~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v~~s 103 (104)
T 1jmt_A 43 VFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELS 103 (104)
T ss_dssp HHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEEC
T ss_pred HHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEEc
Confidence 44555 9999999999999 67899999999999999999999999999999999999875
No 192
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.64 E-value=9.4e-16 Score=98.45 Aligned_cols=70 Identities=31% Similarity=0.477 Sum_probs=64.5
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc--cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCce--EEEEee
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKT--IKVSYA 71 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~--~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~--l~v~~~ 71 (136)
|||+|||..++ |+++|++||.|..+.++. .+|.++|||||+|.+.++|.+|+..|||..+.|+. |+|.++
T Consensus 91 l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 91 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp EEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred EEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 79999999988 999999999999999988 58999999999999999999999999999999965 777764
No 193
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=3.3e-16 Score=92.54 Aligned_cols=72 Identities=21% Similarity=0.334 Sum_probs=63.3
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEE-EEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICV-FLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSS 75 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~-~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~ 75 (136)
|||+|||..++ |+++|++||+|.++. ++... ..|.|||+|.+.++|+.|+..|||..+.|++|.|.++.++.
T Consensus 18 l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~--~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 93 (96)
T 2e44_A 18 LQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDS--ETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDEM 93 (96)
T ss_dssp EEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSS--SSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCCC
T ss_pred EEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCC--CCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCccc
Confidence 89999999998 999999999999994 66521 22339999999999999999999999999999999998873
No 194
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.63 E-value=8.1e-16 Score=104.62 Aligned_cols=70 Identities=19% Similarity=0.278 Sum_probs=63.1
Q ss_pred eeecCCChhh---------h---HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCcee--------
Q psy6353 2 VYQTLLNKLF---------T---YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRL-------- 61 (136)
Q Consensus 2 v~v~nl~~~~---------~---l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~-------- 61 (136)
|||+||+..+ + |+++|++||+|.+|.++. ++|||||+|.+.++|+.|+.+|||..+
T Consensus 137 LfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~----~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~e~ 212 (240)
T 3u1l_A 137 LYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE----SKNCGFVKFKYQANAEFAKEAMSNQTLLLPSDKEW 212 (240)
T ss_dssp EEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG----GGTEEEEEESSHHHHHHHHHHHTTCCCCCTTSTTG
T ss_pred eecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC----CCCEEEEEeCCHHHHHHHHHHhCCCEEeccccccc
Confidence 7999999886 4 999999999999999985 789999999999999999999999999
Q ss_pred ----CCceEEEEeeCCCC
Q psy6353 62 ----QNKTIKVSYARPSS 75 (136)
Q Consensus 62 ----~g~~l~v~~~~~~~ 75 (136)
.|+.|.|.|+.+.+
T Consensus 213 ~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 213 DDRREGTGLLVKWANEDP 230 (240)
T ss_dssp GGGGGSCCCEEEECC---
T ss_pred cccCCCCEEEEEEccCCC
Confidence 89999999998654
No 195
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.63 E-value=1.1e-15 Score=94.11 Aligned_cols=71 Identities=23% Similarity=0.264 Sum_probs=62.7
Q ss_pred eeecCCChhhh-HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCC
Q psy6353 2 VYQTLLNKLFT-YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76 (136)
Q Consensus 2 v~v~nl~~~~~-l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~ 76 (136)
|||+|++..-. |+++|++||.|.++.+. .++|||||+|.+.++|+.|+..|||..+.|++|.|.++.++..
T Consensus 42 lfVgnl~~te~~L~~~F~~~G~I~~v~i~----~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~~ 113 (121)
T 2bz2_A 42 LYVYGEDMTPTLLRGAFSPFGNIIDLSMD----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPM 113 (121)
T ss_dssp EEEECSSCCHHHHHHHHSTTCCCSCEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSCC
T ss_pred EEEcCCCCCHHHHHHHHHccCCEEEEEEe----CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCCC
Confidence 79999753222 99999999999999886 4889999999999999999999999999999999999987643
No 196
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=5.2e-16 Score=90.37 Aligned_cols=71 Identities=15% Similarity=0.206 Sum_probs=60.4
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSES 77 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~~ 77 (136)
|||+|||..++ |+++|++||+|.++.++. .++|||||+|.+.++|+++... ...+.|++|.+.++.++...
T Consensus 8 l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~---~~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~~~~~ 81 (88)
T 1wf0_A 8 VFVGRCTGDMTEDELREFFSQYGDVMDVFIPK---PFRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEPKHNS 81 (88)
T ss_dssp EEEESCCSSSCHHHHHHHSTTTSCCCEEECCS---SCCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCCCCCC
T ss_pred EEEeCCCCCCCHHHHHHHHHHcCCeeEEEEec---CCCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCCCCCC
Confidence 89999999998 999999999999999875 4899999999999999865332 35568999999999877653
No 197
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.62 E-value=9.1e-16 Score=88.98 Aligned_cols=64 Identities=11% Similarity=0.225 Sum_probs=59.0
Q ss_pred eeecCCChhhh---HHHHhccC----C-------CeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEE
Q psy6353 2 VYQTLLNKLFT---YEKVHLGF----S-------DAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIK 67 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~----G-------~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~ 67 (136)
|||+|||..++ |+++|++| | +|.++.+.+ ++|||||+|.+.++|++|+ .+||..+.|++|+
T Consensus 9 l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~----~kg~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 83 (87)
T 2hzc_A 9 LYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ----DKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLK 83 (87)
T ss_dssp EEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECS----SSSEEEEEESSHHHHHHHG-GGTTCEETTEECE
T ss_pred EEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecC----CCcEEEEEcCCHHHHHHHH-hcCCCEECCeEEE
Confidence 79999999998 99999999 8 899888764 5899999999999999999 8999999999999
Q ss_pred EEe
Q psy6353 68 VSY 70 (136)
Q Consensus 68 v~~ 70 (136)
|+.
T Consensus 84 V~r 86 (87)
T 2hzc_A 84 IRR 86 (87)
T ss_dssp EEC
T ss_pred EeC
Confidence 874
No 198
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.59 E-value=3e-15 Score=86.82 Aligned_cols=60 Identities=17% Similarity=0.349 Sum_probs=54.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCc-cceEeecCcccccc
Q psy6353 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATEN-GKYYSGLGGRERLR 135 (136)
Q Consensus 76 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~-~~~fv~f~~~e~~~ 135 (136)
.....++|||+|||..+++++|+++|++||.|..+.+++++.++.+ +.|||+|.+.|+|.
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~ 67 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVE 67 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHH
Confidence 3457789999999999999999999999999999999999888877 45999999999875
No 199
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.59 E-value=7.3e-15 Score=89.99 Aligned_cols=60 Identities=17% Similarity=0.208 Sum_probs=55.7
Q ss_pred HHHHhccCCCeeEEEEEc-c-----CCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeC
Q psy6353 13 YEKVHLGFSDAEICVFLI-S-----TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR 72 (136)
Q Consensus 13 l~~~f~~~G~v~~~~~~~-~-----~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~ 72 (136)
|++.|++||+|.++.+++ . +++++|++||+|.+.++|.+|+..|||..+.||.|.+.++.
T Consensus 42 l~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~i~v~~~~ 107 (118)
T 3ue2_A 42 VTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 107 (118)
T ss_dssp HHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred HHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcC
Confidence 899999999999999998 2 35788999999999999999999999999999999998875
No 200
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.58 E-value=1.5e-16 Score=93.32 Aligned_cols=56 Identities=9% Similarity=0.218 Sum_probs=51.2
Q ss_pred CceEEEcCCCCCCCHHHHHHhhcCCC-ceEEEEEEeCCCCCCc-cceEeecCcccccc
Q psy6353 80 GANLYVSGLPKHMSQQELESLFSPYG-RIITSRILCDNLATEN-GKYYSGLGGRERLR 135 (136)
Q Consensus 80 ~~~l~v~nl~~~~t~~~l~~~f~~~G-~v~~~~i~~~~~~~~~-~~~fv~f~~~e~~~ 135 (136)
+++|||+|||+++|+++|+++|++|| +|.+|++++|+.+|.+ ++|||+|.+.|+|.
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~ 58 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDAT 58 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHH
Confidence 36899999999999999999999999 8999999999988877 45999999999875
No 201
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=2.3e-15 Score=90.20 Aligned_cols=58 Identities=12% Similarity=0.338 Sum_probs=52.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 78 IKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 78 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
...++|||+|||.++|+++|+++|++||+|.+|.+++++.+..+|.|||+|.+.|+|.
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~ 66 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAK 66 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHH
Confidence 4568999999999999999999999999999999999988444466999999999874
No 202
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.58 E-value=3.1e-15 Score=90.70 Aligned_cols=57 Identities=12% Similarity=0.146 Sum_probs=52.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCc-cceEeecCcccccc
Q psy6353 79 KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATEN-GKYYSGLGGRERLR 135 (136)
Q Consensus 79 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~-~~~fv~f~~~e~~~ 135 (136)
+.++|||+|||..+++++|+++|++||.|.++.|++|+.++.+ +.|||+|.+.|+|.
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~ 62 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAK 62 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHH
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHH
Confidence 5689999999999999999999999999999999999998877 55999999999875
No 203
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.5e-14 Score=87.81 Aligned_cols=62 Identities=18% Similarity=0.263 Sum_probs=55.7
Q ss_pred HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCC
Q psy6353 13 YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76 (136)
Q Consensus 13 l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~ 76 (136)
|+++|++||+|.++.+.. ..++|||||+|.+.++|++|+..|||..+.|++|.|.++.++.+
T Consensus 43 l~~~f~~~G~v~~v~i~~--~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 43 LRVECSKFGQIRKLLLFD--RHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDGTTD 104 (112)
T ss_dssp HHHHGGGTSCCSEEEEET--TCTTCEEEEECSCHHHHHHHHHHSTTCEETTEECEEEECCSCCC
T ss_pred HHHHHHccCCEeEEEEec--CCCCEEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCCC
Confidence 899999999999996643 34899999999999999999999999999999999999987643
No 204
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.57 E-value=8.8e-16 Score=90.75 Aligned_cols=57 Identities=14% Similarity=0.250 Sum_probs=50.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhcCCCc--eEEEEEEeCCCCCCcc-ceEeecCcccccc
Q psy6353 79 KGANLYVSGLPKHMSQQELESLFSPYGR--IITSRILCDNLATENG-KYYSGLGGRERLR 135 (136)
Q Consensus 79 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~--v~~~~i~~~~~~~~~~-~~fv~f~~~e~~~ 135 (136)
.=.+|||+|||+.+|+++|+++|++||. +.+|++++|+.+|.++ +|||+|.+.|+|.
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~ 67 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDAS 67 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHH
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHH
Confidence 3468999999999999999999999995 5689999999988874 5999999999875
No 205
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.56 E-value=1.1e-14 Score=87.50 Aligned_cols=61 Identities=18% Similarity=0.260 Sum_probs=55.9
Q ss_pred HHHHhccCCCeeEEEEEc-cC---CCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCC
Q psy6353 13 YEKVHLGFSDAEICVFLI-ST---AQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARP 73 (136)
Q Consensus 13 l~~~f~~~G~v~~~~~~~-~~---~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~ 73 (136)
|++.|++||+|.++.+++ .. ++++|+|||+|.+.++|++|+.+|||..+.||+|++.++.+
T Consensus 32 l~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 32 VRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDP 96 (105)
T ss_dssp HHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECH
T ss_pred HHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEeCH
Confidence 899999999999999998 32 46899999999999999999999999999999999998753
No 206
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.54 E-value=1.8e-14 Score=97.55 Aligned_cols=70 Identities=13% Similarity=0.178 Sum_probs=64.8
Q ss_pred eeecCCChhhh---HHHHhccCC-CeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeC-CceEEEEeeCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFS-DAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQ-NKTIKVSYARPS 74 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G-~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~-g~~l~v~~~~~~ 74 (136)
|||+|||..++ |+++|++|| .|..+.++. .++|||||+|.+.++|.+|+..|||..+. |++|+|.++.++
T Consensus 154 l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~---~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 154 LHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQ---KDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp EEEECCCTTCCHHHHHHHHHTTSCCEEEEEECS---SSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred EEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEE---CCCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 89999999988 999999999 999999865 45799999999999999999999999999 999999999864
No 207
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.54 E-value=1.2e-14 Score=96.16 Aligned_cols=70 Identities=13% Similarity=0.178 Sum_probs=64.7
Q ss_pred eeecCCChhhh---HHHHhccCC-CeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeC-CceEEEEeeCCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFS-DAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQ-NKTIKVSYARPS 74 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G-~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~-g~~l~v~~~~~~ 74 (136)
|||+|||..++ |+++|++|| .|.++.++. .++|+|||+|.+.++|..|+..+||..+. |++|+|.++.++
T Consensus 123 l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~---~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 123 LHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQ---KDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp EEECCCCTTCCHHHHHHHHHHTTSCCCEEEESS---TTSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred EEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEe---CCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 79999999988 999999999 999999865 34799999999999999999999999999 999999999865
No 208
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=1.5e-14 Score=86.46 Aligned_cols=63 Identities=19% Similarity=0.225 Sum_probs=55.5
Q ss_pred CCCCCCCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCc-cceEeecCcccccc
Q psy6353 73 PSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATEN-GKYYSGLGGRERLR 135 (136)
Q Consensus 73 ~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~-~~~fv~f~~~e~~~ 135 (136)
+.......++|||+|||..+++++|+++|++||.|..+.++.++.++.+ +.|||+|.+.|+|.
T Consensus 6 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~ 69 (103)
T 2dnm_A 6 SGPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQ 69 (103)
T ss_dssp CSSCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHH
T ss_pred CCCCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHH
Confidence 3344557799999999999999999999999999999999999887776 56999999999875
No 209
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.54 E-value=2.6e-14 Score=99.24 Aligned_cols=68 Identities=19% Similarity=0.323 Sum_probs=63.2
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeC-CceEEEEeeC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQ-NKTIKVSYAR 72 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~-g~~l~v~~~~ 72 (136)
|||+|||..++ |+++|++||.|.++.++. ..+|||||+|.+.++|..|+..|||..+. |+.|+|.|++
T Consensus 210 l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~---~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 210 LFLTNLPEETNELMLSMLFNQFPGFKEVRLVP---GRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred EEEeCCCCcCCHHHHHHHHHhcCCeEEEEEec---CCCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 89999999998 999999999999999886 22689999999999999999999999999 9999999975
No 210
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=1.6e-14 Score=85.73 Aligned_cols=59 Identities=17% Similarity=0.396 Sum_probs=53.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCc-cceEeecCcccccc
Q psy6353 77 SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATEN-GKYYSGLGGRERLR 135 (136)
Q Consensus 77 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~-~~~fv~f~~~e~~~ 135 (136)
....++|||+|||..+++++|+++|++||.|..+.+++++.++.. +.|||+|.+.|+|.
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~ 66 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVD 66 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHH
Confidence 456789999999999999999999999999999999999887776 56999999999875
No 211
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.54 E-value=5e-15 Score=90.39 Aligned_cols=55 Identities=22% Similarity=0.536 Sum_probs=49.9
Q ss_pred CceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 80 GANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 80 ~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
..+|||+|||.++|+++|+++|++||.|.+|+|++|..+ .+++|||+|.+.|+|.
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~-~kg~afV~f~~~~~A~ 59 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAE 59 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTE-EEEEEEEEESCHHHHH
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCC-CCceEEEEECCHHHHH
Confidence 468999999999999999999999999999999999754 4577999999999875
No 212
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.4e-14 Score=83.60 Aligned_cols=57 Identities=23% Similarity=0.501 Sum_probs=52.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCc-cceEeecCcccccc
Q psy6353 79 KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATEN-GKYYSGLGGRERLR 135 (136)
Q Consensus 79 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~-~~~fv~f~~~e~~~ 135 (136)
..++|||+|||..+++++|+++|++||.|..+.++.++.++.. +.|||+|.+.|+|.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~ 61 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQ 61 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHH
Confidence 5689999999999999999999999999999999999887776 55999999999875
No 213
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.53 E-value=3.4e-14 Score=97.96 Aligned_cols=74 Identities=20% Similarity=0.293 Sum_probs=67.1
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEc-cCCCceeeEEEEcCCHHHHHHHHHHHc-CceeC---CceEEEEeeCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLI-STAQSLGYGFVNYHRPEDAEKAINTLN-GLRLQ---NKTIKVSYARP 73 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~-~~~~~kg~~fv~f~~~~~a~~a~~~~~-~~~~~---g~~l~v~~~~~ 73 (136)
|||+|||..++ |+++|++||.|.++.++. .+|.++|||||+|.+.++|.+|+..+| +..+. ++++.|.++.+
T Consensus 99 l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~ 178 (261)
T 3sde_A 99 LTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQ 178 (261)
T ss_dssp EEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCC
T ss_pred ccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeeccc
Confidence 79999999998 999999999999999999 899999999999999999999999995 55554 89999998876
Q ss_pred CC
Q psy6353 74 SS 75 (136)
Q Consensus 74 ~~ 75 (136)
..
T Consensus 179 ~~ 180 (261)
T 3sde_A 179 FD 180 (261)
T ss_dssp EE
T ss_pred cC
Confidence 54
No 214
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.6e-14 Score=86.33 Aligned_cols=62 Identities=21% Similarity=0.367 Sum_probs=54.9
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCc-cceEeecCcccccc
Q psy6353 74 SSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATEN-GKYYSGLGGRERLR 135 (136)
Q Consensus 74 ~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~-~~~fv~f~~~e~~~ 135 (136)
..+....++|||+|||..+++++|+++|++||.|..|.+++++.++.. +.|||+|.+.|+|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~ 71 (103)
T 2cq0_A 9 NRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAA 71 (103)
T ss_dssp CCCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHH
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHH
Confidence 334557799999999999999999999999999999999999877776 45999999999874
No 215
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.53 E-value=1.8e-14 Score=86.31 Aligned_cols=59 Identities=20% Similarity=0.352 Sum_probs=52.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 77 SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 77 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
....++|||+|||..+++++|+++|++||.|..+.++.++.+...+.|||+|.+.|+|.
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~ 70 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQ 70 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHH
Confidence 34679999999999999999999999999999999999985444467999999999874
No 216
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=5.6e-15 Score=83.70 Aligned_cols=55 Identities=16% Similarity=0.395 Sum_probs=50.4
Q ss_pred ceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCc-cceEeecCcccccc
Q psy6353 81 ANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATEN-GKYYSGLGGRERLR 135 (136)
Q Consensus 81 ~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~-~~~fv~f~~~e~~~ 135 (136)
++|||+|||.++++++|+++|++||+|..+.+++++.++.+ +.|||+|.+.|+|.
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~ 56 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVD 56 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHH
Confidence 47999999999999999999999999999999999887776 56999999999875
No 217
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.53 E-value=1.4e-14 Score=96.74 Aligned_cols=70 Identities=10% Similarity=0.105 Sum_probs=61.4
Q ss_pred eeecCCChhhh---HHHHhccCCCe--eEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCc----eEEEEee
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDA--EICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNK----TIKVSYA 71 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v--~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~----~l~v~~~ 71 (136)
|||+|||..++ |+++|++||.| .+++++...+.++|+|||+|.+.++|..|+..|||..+.|+ ++.++++
T Consensus 126 l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 126 LHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 89999999998 99999999999 88988874466679999999999999999999999999876 5666553
No 218
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.53 E-value=1.5e-14 Score=83.00 Aligned_cols=55 Identities=15% Similarity=0.347 Sum_probs=50.8
Q ss_pred ceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCc-cceEeecCcccccc
Q psy6353 81 ANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATEN-GKYYSGLGGRERLR 135 (136)
Q Consensus 81 ~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~-~~~fv~f~~~e~~~ 135 (136)
.+|||+|||.++++++|+++|++||.|..+.+++++.++.+ +.|||+|.+.|+|.
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~ 57 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQ 57 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHH
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHH
Confidence 68999999999999999999999999999999999887776 55999999999875
No 219
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.52 E-value=1.2e-14 Score=87.83 Aligned_cols=59 Identities=17% Similarity=0.398 Sum_probs=51.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCc-cceEeecCcccccc
Q psy6353 77 SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATEN-GKYYSGLGGRERLR 135 (136)
Q Consensus 77 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~-~~~fv~f~~~e~~~ 135 (136)
....++|||+|||.++++++|+++|++||.|..|.+++++.+|.+ +.|||+|.+.|+|.
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~ 81 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVD 81 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHH
Confidence 346789999999999999999999999999999999999887776 56999999999875
No 220
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.6e-14 Score=86.52 Aligned_cols=61 Identities=25% Similarity=0.364 Sum_probs=54.5
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCc-cceEeecCcccccc
Q psy6353 75 SESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATEN-GKYYSGLGGRERLR 135 (136)
Q Consensus 75 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~-~~~fv~f~~~e~~~ 135 (136)
......++|||+|||..+++++|+++|++||.|..+.++.++.++.. +.|||+|.+.|+|.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~ 71 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDAD 71 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHH
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHH
Confidence 34457789999999999999999999999999999999999877776 56999999999875
No 221
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=2.4e-14 Score=84.12 Aligned_cols=59 Identities=22% Similarity=0.446 Sum_probs=53.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCc-cceEeecCcccccc
Q psy6353 77 SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATEN-GKYYSGLGGRERLR 135 (136)
Q Consensus 77 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~-~~~fv~f~~~e~~~ 135 (136)
....++|||+|||..+++++|+++|++||+|..+.++.++.++.. +.+||+|.+.|+|.
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~ 72 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQ 72 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHH
Confidence 346789999999999999999999999999999999999887776 56999999999875
No 222
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=2e-14 Score=85.87 Aligned_cols=59 Identities=24% Similarity=0.352 Sum_probs=53.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCc-cceEeecCcccccc
Q psy6353 77 SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATEN-GKYYSGLGGRERLR 135 (136)
Q Consensus 77 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~-~~~fv~f~~~e~~~ 135 (136)
....++|||+|||..+++++|+++|++||.|..|.++.++.++.. +.|||+|.+.|+|.
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~ 71 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQV 71 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHH
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHH
Confidence 446789999999999999999999999999999999999887777 45999999999874
No 223
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.52 E-value=1.4e-14 Score=93.64 Aligned_cols=95 Identities=17% Similarity=0.271 Sum_probs=52.7
Q ss_pred EEcCCHHHHHHHHHHHcCceeC--CceEEEEee-------------------CC-CCCCCCCceEEEcCCCCCCCHHHHH
Q psy6353 41 VNYHRPEDAEKAINTLNGLRLQ--NKTIKVSYA-------------------RP-SSESIKGANLYVSGLPKHMSQQELE 98 (136)
Q Consensus 41 v~f~~~~~a~~a~~~~~~~~~~--g~~l~v~~~-------------------~~-~~~~~~~~~l~v~nl~~~~t~~~l~ 98 (136)
.+|.+.++|+.++..+++.... |+.....++ .+ .......++|||+|||..+++++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 5678888888888777764443 433333221 01 1122356789999999999999999
Q ss_pred HhhcCCCceEEEEEEeCCCCCCc-cceEeecCcccccc
Q psy6353 99 SLFSPYGRIITSRILCDNLATEN-GKYYSGLGGRERLR 135 (136)
Q Consensus 99 ~~f~~~G~v~~~~i~~~~~~~~~-~~~fv~f~~~e~~~ 135 (136)
++|++||.|..|.++.+..+|.+ ++|||+|.+.++|.
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~ 128 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQAL 128 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHH
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHH
Confidence 99999999999999999888876 56999999998874
No 224
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=7.2e-15 Score=88.04 Aligned_cols=53 Identities=17% Similarity=0.315 Sum_probs=48.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 78 IKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 78 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
...++|||+|||.++|+++|+++|++||+|.+|.++++ +++|||+|++.|+|.
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kGfaFVeF~~~~~A~ 66 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAAN 66 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT-----TTEEEEEESSHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHH
Confidence 36789999999999999999999999999999999975 478999999999874
No 225
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=2.1e-14 Score=84.47 Aligned_cols=59 Identities=22% Similarity=0.316 Sum_probs=53.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCc-cceEeecCcccccc
Q psy6353 77 SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATEN-GKYYSGLGGRERLR 135 (136)
Q Consensus 77 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~-~~~fv~f~~~e~~~ 135 (136)
....++|||+|||..+++++|+++|++||.|..+.+++++.++.. +.|||+|.+.|+|.
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~ 71 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAK 71 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHH
Confidence 346789999999999999999999999999999999999988776 46999999999875
No 226
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=2.5e-14 Score=85.73 Aligned_cols=59 Identities=24% Similarity=0.386 Sum_probs=53.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCc-cceEeecCcccccc
Q psy6353 77 SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATEN-GKYYSGLGGRERLR 135 (136)
Q Consensus 77 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~-~~~fv~f~~~e~~~ 135 (136)
....++|||+|||..+++++|+++|++||+|..|.+++++.++.. +.|||+|.+.|+|.
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~ 72 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVG 72 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHH
Confidence 456789999999999999999999999999999999999888777 45999999999875
No 227
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.51 E-value=2.4e-15 Score=110.61 Aligned_cols=58 Identities=14% Similarity=0.214 Sum_probs=52.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCc-cceEeecCcccccc
Q psy6353 78 IKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATEN-GKYYSGLGGRERLR 135 (136)
Q Consensus 78 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~-~~~fv~f~~~e~~~ 135 (136)
....+|||+|||..+|+++|.++|++||.|..|.|+.+..++.. ++|||+|.+.|+|.
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~ 158 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMH 158 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHH
Confidence 35679999999999999999999999999999999999877776 66999999999874
No 228
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=3.6e-14 Score=83.47 Aligned_cols=57 Identities=23% Similarity=0.416 Sum_probs=52.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCc-cceEeecCcccccc
Q psy6353 79 KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATEN-GKYYSGLGGRERLR 135 (136)
Q Consensus 79 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~-~~~fv~f~~~e~~~ 135 (136)
..++|||+|||..+++++|+++|++||.|..+.+++++.++.. +.|||+|.+.|+|.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~ 61 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECAR 61 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHH
Confidence 5689999999999999999999999999999999999887776 56999999999875
No 229
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.51 E-value=1.9e-14 Score=83.36 Aligned_cols=57 Identities=18% Similarity=0.374 Sum_probs=51.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCc-cceEeecCcccccc
Q psy6353 79 KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATEN-GKYYSGLGGRERLR 135 (136)
Q Consensus 79 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~-~~~fv~f~~~e~~~ 135 (136)
..++|||+|||.++++++|+++|++||.|.++.+++++.++.. +.|||+|.+.|+|.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~ 62 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAE 62 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHH
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHH
Confidence 5689999999999999999999999999999999999877776 56999999999875
No 230
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.51 E-value=2e-14 Score=83.92 Aligned_cols=54 Identities=17% Similarity=0.333 Sum_probs=48.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 78 IKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 78 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
....+|||+|||.++|+++|+++|++||.|.+|.++++ .+|+|||+|.+.|+|.
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~----srGfaFV~F~~~~~A~ 62 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP----FRAFAFVTFADDKVAQ 62 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS----CCSEEEEEESCHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC----CCCEEEEEECCHHHHH
Confidence 36689999999999999999999999999999999985 5578999999999874
No 231
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.51 E-value=1.3e-14 Score=83.62 Aligned_cols=58 Identities=24% Similarity=0.367 Sum_probs=52.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCc-cceEeecCcccccc
Q psy6353 78 IKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATEN-GKYYSGLGGRERLR 135 (136)
Q Consensus 78 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~-~~~fv~f~~~e~~~ 135 (136)
...++|||+|||..+++++|+++|++||.|..+.+++++.++.. +.|||+|.+.|+|.
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~ 63 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAA 63 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHH
Confidence 36789999999999999999999999999999999999877766 55999999999875
No 232
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.51 E-value=3.1e-14 Score=82.78 Aligned_cols=57 Identities=26% Similarity=0.494 Sum_probs=51.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCc-cceEeecCcccccc
Q psy6353 79 KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATEN-GKYYSGLGGRERLR 135 (136)
Q Consensus 79 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~-~~~fv~f~~~e~~~ 135 (136)
..++|||+|||.++++++|+++|++||.|..+.++.++.++.+ +.|||+|.+.|+|.
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~ 62 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVR 62 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHH
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHH
Confidence 3578999999999999999999999999999999999877776 56999999999875
No 233
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.50 E-value=3.1e-14 Score=85.96 Aligned_cols=59 Identities=24% Similarity=0.437 Sum_probs=53.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCc-cceEeecCcccccc
Q psy6353 77 SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATEN-GKYYSGLGGRERLR 135 (136)
Q Consensus 77 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~-~~~fv~f~~~e~~~ 135 (136)
....++|||+|||..+++++|+++|++||.|..+.+++++.++.. +.|||+|.+.|+|.
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~ 82 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAK 82 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHH
Confidence 346789999999999999999999999999999999999887776 56999999999875
No 234
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.50 E-value=2.2e-14 Score=84.39 Aligned_cols=58 Identities=16% Similarity=0.176 Sum_probs=52.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 78 IKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 78 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
...++|||+|||..+++++|+++|++||+|..+.+++++....++.+||+|.+.|+|.
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~ 71 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVS 71 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHH
Confidence 4668999999999999999999999999999999999987444467999999999875
No 235
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.50 E-value=9.9e-14 Score=91.82 Aligned_cols=91 Identities=12% Similarity=0.269 Sum_probs=71.1
Q ss_pred CHHHHHHHHHHH--cCceeCCceEEEEeeC--CCCC-------CCCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEE
Q psy6353 45 RPEDAEKAINTL--NGLRLQNKTIKVSYAR--PSSE-------SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRIL 113 (136)
Q Consensus 45 ~~~~a~~a~~~~--~~~~~~g~~l~v~~~~--~~~~-------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~ 113 (136)
+.+.+..|+... ....+.+....+.... |.+. ....++|||+|||.++|+++|+++|++||.|..|+++
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~ 142 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMR 142 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEE
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEE
Confidence 667788888876 5566766655665542 2221 1135799999999999999999999999999999999
Q ss_pred eCCCCCCccceEeecCcccccc
Q psy6353 114 CDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 114 ~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
++..+..+|.|||+|.+.|+|.
T Consensus 143 ~~~~~~~kG~aFVeF~~~e~A~ 164 (193)
T 2voo_A 143 RTLHKAFKGSIFVVFDSIESAK 164 (193)
T ss_dssp ECTTCCEEEEEEEEESSHHHHH
T ss_pred ECCCCCcccEEEEEECCHHHHH
Confidence 9987555577999999999875
No 236
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=3.4e-14 Score=86.63 Aligned_cols=59 Identities=20% Similarity=0.420 Sum_probs=53.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCc-cceEeecCcccccc
Q psy6353 77 SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATEN-GKYYSGLGGRERLR 135 (136)
Q Consensus 77 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~-~~~fv~f~~~e~~~ 135 (136)
....++|||+|||..+++++|+++|++||.|..|.+++++.++.. +.|||+|.+.|+|.
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~ 73 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 73 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHH
Confidence 456789999999999999999999999999999999999887777 46999999999875
No 237
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.50 E-value=3.5e-14 Score=86.42 Aligned_cols=60 Identities=17% Similarity=0.405 Sum_probs=54.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCc-cceEeecCcccccc
Q psy6353 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATEN-GKYYSGLGGRERLR 135 (136)
Q Consensus 76 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~-~~~fv~f~~~e~~~ 135 (136)
.....++|||+|||..+++++|+++|++||.|..|.+++++.++.. +.|||+|.+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~ 71 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAE 71 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHH
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHH
Confidence 3457789999999999999999999999999999999999877776 56999999999875
No 238
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=2.5e-14 Score=84.80 Aligned_cols=58 Identities=16% Similarity=0.278 Sum_probs=53.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhcCCCceE-EEEEEeCCCCCCc-cceEeecCcccccc
Q psy6353 78 IKGANLYVSGLPKHMSQQELESLFSPYGRII-TSRILCDNLATEN-GKYYSGLGGRERLR 135 (136)
Q Consensus 78 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~-~~~i~~~~~~~~~-~~~fv~f~~~e~~~ 135 (136)
...++|||+|||..+++++|+++|++||.|. .+.+++++.++.. +.|||+|.+.|+|.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~ 66 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAE 66 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHH
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHH
Confidence 4678999999999999999999999999999 9999999988777 55999999999874
No 239
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=5.4e-14 Score=83.98 Aligned_cols=58 Identities=17% Similarity=0.360 Sum_probs=52.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 77 SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 77 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
....++|||+|||..+++++|+++|++||.|..|.++.+..+ ..+.|||+|.+.|+|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~-~~g~afV~f~~~~~a~ 69 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADAD 69 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT-TCCEEEEEESCHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC-CcEEEEEEECCHHHHH
Confidence 456789999999999999999999999999999999998765 5578999999999875
No 240
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.50 E-value=9.7e-15 Score=82.37 Aligned_cols=54 Identities=13% Similarity=0.422 Sum_probs=49.5
Q ss_pred eEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCc-cceEeecCcccccc
Q psy6353 82 NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATEN-GKYYSGLGGRERLR 135 (136)
Q Consensus 82 ~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~-~~~fv~f~~~e~~~ 135 (136)
+|||+|||.++++++|+++|++||+|..+.++.++.++.+ +.|||+|.+.|+|.
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~ 55 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVE 55 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHH
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHH
Confidence 5899999999999999999999999999999999877776 55999999999875
No 241
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=2.7e-14 Score=84.71 Aligned_cols=58 Identities=26% Similarity=0.335 Sum_probs=52.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCc-cceEeecCcccccc
Q psy6353 78 IKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATEN-GKYYSGLGGRERLR 135 (136)
Q Consensus 78 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~-~~~fv~f~~~e~~~ 135 (136)
...++|||+|||..+++++|+++|++||.|..+.++.++.++.. +.|||+|.+.|+|.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~ 64 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAV 64 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHH
Confidence 46789999999999999999999999999999999999877776 56999999999875
No 242
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=3.3e-14 Score=85.96 Aligned_cols=58 Identities=12% Similarity=0.300 Sum_probs=53.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCc-cceEeecCcccccc
Q psy6353 78 IKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATEN-GKYYSGLGGRERLR 135 (136)
Q Consensus 78 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~-~~~fv~f~~~e~~~ 135 (136)
...++|||+|||..+++++|+++|++||.|..|.+++++.++.. +.|||+|.+.|+|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~ 71 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQ 71 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHH
Confidence 46789999999999999999999999999999999999888766 56999999999874
No 243
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.50 E-value=1e-14 Score=91.78 Aligned_cols=97 Identities=13% Similarity=0.179 Sum_probs=50.2
Q ss_pred eeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEe--eCCCCCCCCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEe
Q psy6353 37 GYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILC 114 (136)
Q Consensus 37 g~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~--~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~ 114 (136)
|+|+.++.-++.+..+...+... ..+...--.. ...........+|||+|||.++|+++|+++|++|| |..|.|+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~-~gg~~~g~~~g~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~ 79 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMASM-TGGQQMGRGSGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEI 79 (139)
T ss_dssp --------------------------------------------CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCC
T ss_pred CcccccccCccccchhcccchhc-cCCCCCCCCCCCcccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEE
Confidence 56777777666665555433222 2222211111 11112234668999999999999999999999999 67999999
Q ss_pred CCCCCCccceEeecCcccccc
Q psy6353 115 DNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 115 ~~~~~~~~~~fv~f~~~e~~~ 135 (136)
|+....++.+||+|.+.|+|.
T Consensus 80 d~~g~srGfaFV~F~~~e~A~ 100 (139)
T 2hgn_A 80 GPDGRVTGEADVEFATHEEAV 100 (139)
T ss_dssp SSSSCSSCCCEEECSHHHHHH
T ss_pred CCCCCCceEEEEEeCCHHHHH
Confidence 987444567999999999875
No 244
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=3.5e-14 Score=86.93 Aligned_cols=54 Identities=17% Similarity=0.312 Sum_probs=49.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 77 SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 77 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
..+.++|||+|||.++|+++|+++|++||.|.++.++++ ++.|||+|++.|+|.
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kG~AFVeF~~~e~A~ 81 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAAN 81 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG-----GTEEEEECSCHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-----CCEEEEEECCHHHHH
Confidence 346789999999999999999999999999999999975 478999999999874
No 245
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.49 E-value=5.2e-14 Score=83.50 Aligned_cols=59 Identities=15% Similarity=0.273 Sum_probs=53.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhcCCCceEE--------EEEEeCCCCCCc-cceEeecCcccccc
Q psy6353 77 SIKGANLYVSGLPKHMSQQELESLFSPYGRIIT--------SRILCDNLATEN-GKYYSGLGGRERLR 135 (136)
Q Consensus 77 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~--------~~i~~~~~~~~~-~~~fv~f~~~e~~~ 135 (136)
.....+|||+|||..+++++|+++|++||.|.. +.++.++.+|.. +.|||+|.+.|+|.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~ 77 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAK 77 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHH
Confidence 346789999999999999999999999999999 999999887776 55999999999874
No 246
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.49 E-value=3.4e-14 Score=86.51 Aligned_cols=60 Identities=22% Similarity=0.490 Sum_probs=53.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCcc-ceEeecCcccccc
Q psy6353 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG-KYYSGLGGRERLR 135 (136)
Q Consensus 76 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~-~~fv~f~~~e~~~ 135 (136)
.....++|||+|||..+++++|+++|++||.|..+.+++++.++..+ .+||+|.+.|+|.
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~ 81 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQ 81 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHH
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHH
Confidence 34466899999999999999999999999999999999999777774 5999999999875
No 247
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=3.8e-14 Score=85.05 Aligned_cols=59 Identities=19% Similarity=0.316 Sum_probs=53.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCc-cceEeecCcccccc
Q psy6353 77 SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATEN-GKYYSGLGGRERLR 135 (136)
Q Consensus 77 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~-~~~fv~f~~~e~~~ 135 (136)
...+++|||+|||..+++++|+++|++||.|..+.++.++.++.+ +.|||+|.+.|+|.
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~ 79 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQ 79 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHH
Confidence 346689999999999999999999999999999999999988776 55999999999874
No 248
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=3.5e-14 Score=85.27 Aligned_cols=60 Identities=18% Similarity=0.330 Sum_probs=53.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeC-CCCCCc-cceEeecCcccccc
Q psy6353 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD-NLATEN-GKYYSGLGGRERLR 135 (136)
Q Consensus 76 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~-~~~~~~-~~~fv~f~~~e~~~ 135 (136)
.....++|||+|||..+++++|+++|++||.|..|.++++ ..++.. +.|||+|.+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~ 72 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAK 72 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHH
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHH
Confidence 3457789999999999999999999999999999999999 666665 56999999999875
No 249
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=5.6e-14 Score=83.47 Aligned_cols=58 Identities=21% Similarity=0.417 Sum_probs=51.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 78 IKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 78 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
...++|||+|||..+++++|+++|++||.|..+.++.+.....++.|||+|.+.|+|.
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~ 72 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQAS 72 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHH
Confidence 4678999999999999999999999999999999999983333466999999999875
No 250
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.49 E-value=2.8e-14 Score=84.24 Aligned_cols=56 Identities=16% Similarity=0.322 Sum_probs=51.4
Q ss_pred CceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCc-cceEeecCcccccc
Q psy6353 80 GANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATEN-GKYYSGLGGRERLR 135 (136)
Q Consensus 80 ~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~-~~~fv~f~~~e~~~ 135 (136)
+++|||+|||..+++++|+++|++||.|..+.++.++.+|.. +.|||+|.+.|+|.
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~ 58 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSA 58 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHH
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHH
Confidence 578999999999999999999999999999999999887776 56999999999874
No 251
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.49 E-value=4.3e-14 Score=86.39 Aligned_cols=59 Identities=20% Similarity=0.501 Sum_probs=53.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCc-cceEeecCcccccc
Q psy6353 77 SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATEN-GKYYSGLGGRERLR 135 (136)
Q Consensus 77 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~-~~~fv~f~~~e~~~ 135 (136)
....++|||+|||.++++++|+++|++||.|..+.+++++.++.. +.+||+|.+.|++.
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~ 96 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQ 96 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHH
Confidence 345689999999999999999999999999999999999877776 56999999999875
No 252
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=5.6e-14 Score=83.81 Aligned_cols=54 Identities=19% Similarity=0.292 Sum_probs=48.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 77 SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 77 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
..+.++|||+|||..+++++|+++|++||.|..+.++++ ++.|||+|++.|+|.
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~-----kg~aFVef~~~~~A~ 65 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG-----KNQAFLELATEEAAI 65 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT-----TTEEEEEESSHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC-----CCEEEEEECCHHHHH
Confidence 346789999999999999999999999999999999875 578999999999874
No 253
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.49 E-value=1.5e-14 Score=86.85 Aligned_cols=60 Identities=20% Similarity=0.460 Sum_probs=53.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCc-cceEeecCcccccc
Q psy6353 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATEN-GKYYSGLGGRERLR 135 (136)
Q Consensus 76 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~-~~~fv~f~~~e~~~ 135 (136)
.....++|||+|||..+++++|+++|++||.|..+.++.++.++.. +.|||+|.+.|+|.
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~ 69 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESAL 69 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHH
Confidence 3456789999999999999999999999999999999999887776 55999999999874
No 254
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.49 E-value=1.2e-14 Score=84.96 Aligned_cols=55 Identities=15% Similarity=0.297 Sum_probs=48.3
Q ss_pred ceEEEcCCCCCCCHHHHHHhhcCCC--ceEEEEEEeCCCCCCcc-ceEeecCcccccc
Q psy6353 81 ANLYVSGLPKHMSQQELESLFSPYG--RIITSRILCDNLATENG-KYYSGLGGRERLR 135 (136)
Q Consensus 81 ~~l~v~nl~~~~t~~~l~~~f~~~G--~v~~~~i~~~~~~~~~~-~~fv~f~~~e~~~ 135 (136)
.+|||+|||.++|+++|+++|++|| .|.+++++.|+.+|.++ .|||+|.+.|+|.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~ 59 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSK 59 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHH
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHH
Confidence 4799999999999999999999999 99999999999888874 5999999999875
No 255
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=3.6e-14 Score=85.77 Aligned_cols=64 Identities=16% Similarity=0.330 Sum_probs=54.3
Q ss_pred eCCCCCCCCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 71 ARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 71 ~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
+.+.......++|||+|||..+++++|+++|++||.|..+.++++... .++.|||+|.+.|+|.
T Consensus 20 S~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~-~kg~afV~f~~~~~A~ 83 (109)
T 2err_A 20 HMNTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADAD 83 (109)
T ss_dssp --CCSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTB-CTTEEEEECCCSHHHH
T ss_pred CCCccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCC-CceEEEEEECCHHHHH
Confidence 344445567899999999999999999999999999999999998654 5578999999999875
No 256
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.48 E-value=7.9e-15 Score=82.70 Aligned_cols=54 Identities=17% Similarity=0.438 Sum_probs=49.7
Q ss_pred eEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCc-cceEeecCcccccc
Q psy6353 82 NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATEN-GKYYSGLGGRERLR 135 (136)
Q Consensus 82 ~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~-~~~fv~f~~~e~~~ 135 (136)
+|||+|||.++++++|+++|++||+|..+.+++++.++.+ +.|||+|.+.|+|.
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~ 55 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVK 55 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHH
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHH
Confidence 5899999999999999999999999999999999887776 56999999999875
No 257
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=4.6e-14 Score=84.27 Aligned_cols=59 Identities=14% Similarity=0.276 Sum_probs=52.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 76 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
.....++|||+|||..+++++|+++|++||.|..|.++++..+ .++.|||+|.+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~~g~afV~f~~~~~a~ 69 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS-NDPYCFVEFYEHRDAA 69 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS-SCCEEEEEESSHHHHH
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC-CCCEEEEEECCHHHHH
Confidence 3456789999999999999999999999999999999999765 4578999999999875
No 258
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=5.9e-14 Score=84.11 Aligned_cols=58 Identities=17% Similarity=0.247 Sum_probs=50.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhcCCCceEE-EEEEeCCCCCCccceEeecCcccccc
Q psy6353 78 IKGANLYVSGLPKHMSQQELESLFSPYGRIIT-SRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 78 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~-~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
....+|||+|||..+|+++|+++|++||.|.. +.++.+..+..++.|||+|.+.|+|.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~ 71 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAE 71 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHH
Confidence 46789999999999999999999999999987 88998844444467999999999875
No 259
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=6.3e-14 Score=83.76 Aligned_cols=57 Identities=19% Similarity=0.292 Sum_probs=49.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCc-cceEeecCcccccc
Q psy6353 77 SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATEN-GKYYSGLGGRERLR 135 (136)
Q Consensus 77 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~-~~~fv~f~~~e~~~ 135 (136)
.....+|||+|||.++|+++|+++|++||. ..|.++.|+ ++.+ +.|||+|.+.|+|.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~ 69 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAV 69 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHH
Confidence 346689999999999999999999999995 599999998 5554 66999999999875
No 260
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=7.4e-14 Score=83.38 Aligned_cols=58 Identities=22% Similarity=0.438 Sum_probs=51.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 77 SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 77 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
....++|||+|||..+|+++|+++|++||.|..+.++.+ .....+.|||+|.+.|+|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~~~g~afV~f~~~~~A~ 69 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEAT 69 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC-SSSEEEEEEEEESSHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-CCCcCEEEEEEECCHHHHH
Confidence 446789999999999999999999999999999999998 3334467999999999875
No 261
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=8.8e-14 Score=84.48 Aligned_cols=59 Identities=19% Similarity=0.236 Sum_probs=52.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 77 SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 77 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
....++|||+|||..+++++|+++|.+||.|..+.++.++.....+.+||+|.+.|+|.
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~ 70 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAV 70 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHH
Confidence 34678999999999999999999999999999999999986444467999999998874
No 262
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=2.5e-14 Score=84.32 Aligned_cols=57 Identities=16% Similarity=0.357 Sum_probs=52.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhcCCCceEEE-EEEeCCCCCCc-cceEeecCcccccc
Q psy6353 79 KGANLYVSGLPKHMSQQELESLFSPYGRIITS-RILCDNLATEN-GKYYSGLGGRERLR 135 (136)
Q Consensus 79 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~-~i~~~~~~~~~-~~~fv~f~~~e~~~ 135 (136)
..++|||+|||..+++++|+++|++||.|..+ .+++++.++.. +.|||+|.+.|+|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~ 62 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASD 62 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHH
Confidence 56899999999999999999999999999999 99999777776 56999999999875
No 263
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.47 E-value=3.8e-14 Score=84.49 Aligned_cols=56 Identities=20% Similarity=0.424 Sum_probs=50.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCc-cceEeecCcccccc
Q psy6353 79 KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATEN-GKYYSGLGGRERLR 135 (136)
Q Consensus 79 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~-~~~fv~f~~~e~~~ 135 (136)
..++|||+|||..+++++|+++|++||.|..+.++++. ++.. +.|||+|.+.|+|.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~ 64 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQ 64 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHH
Confidence 56899999999999999999999999999999999998 5554 66999999999875
No 264
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.47 E-value=6e-14 Score=87.27 Aligned_cols=59 Identities=22% Similarity=0.316 Sum_probs=53.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCc-cceEeecCcccccc
Q psy6353 77 SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATEN-GKYYSGLGGRERLR 135 (136)
Q Consensus 77 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~-~~~fv~f~~~e~~~ 135 (136)
....++|||+|||..+++++|+++|++||+|..|.+++++.++.. +.|||+|.+.|+|.
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~ 102 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAK 102 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHH
Confidence 346789999999999999999999999999999999999888776 56999999999875
No 265
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=3.5e-14 Score=84.62 Aligned_cols=58 Identities=24% Similarity=0.367 Sum_probs=52.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCc-cceEeecCcccccc
Q psy6353 78 IKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATEN-GKYYSGLGGRERLR 135 (136)
Q Consensus 78 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~-~~~fv~f~~~e~~~ 135 (136)
...++|||+|||..+++++|+++|++||.|..+.++.++.++.. +.|||+|.+.|+|.
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~ 68 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAA 68 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHH
Confidence 46789999999999999999999999999999999999887776 56999999999875
No 266
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=6.2e-14 Score=83.83 Aligned_cols=58 Identities=16% Similarity=0.210 Sum_probs=52.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhcC-CCceEEEEEEeCCCCCCc-cceEeecCcccccc
Q psy6353 77 SIKGANLYVSGLPKHMSQQELESLFSP-YGRIITSRILCDNLATEN-GKYYSGLGGRERLR 135 (136)
Q Consensus 77 ~~~~~~l~v~nl~~~~t~~~l~~~f~~-~G~v~~~~i~~~~~~~~~-~~~fv~f~~~e~~~ 135 (136)
....++|||+|||..+|+++|+++|++ ||.|..+.++.+. ++.+ +.|||+|.+.|+|.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~ 65 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQK 65 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHH
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHH
Confidence 346789999999999999999999999 9999999999999 5554 66999999999874
No 267
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=9.1e-14 Score=84.48 Aligned_cols=57 Identities=19% Similarity=0.393 Sum_probs=52.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCc-cceEeecCcccccc
Q psy6353 79 KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATEN-GKYYSGLGGRERLR 135 (136)
Q Consensus 79 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~-~~~fv~f~~~e~~~ 135 (136)
..++|||+|||..+++++|+++|++||.|..|.++.++.++.. +.|||+|.+.|+|.
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~ 81 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVP 81 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHH
Confidence 3479999999999999999999999999999999999987776 56999999999875
No 268
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.47 E-value=9.4e-15 Score=87.02 Aligned_cols=57 Identities=21% Similarity=0.378 Sum_probs=52.1
Q ss_pred CCceEEEcCCCC------CCCHHHHHHhhcCCCceEEEEEEeCCCCCCc-cceEeecCcccccc
Q psy6353 79 KGANLYVSGLPK------HMSQQELESLFSPYGRIITSRILCDNLATEN-GKYYSGLGGRERLR 135 (136)
Q Consensus 79 ~~~~l~v~nl~~------~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~-~~~fv~f~~~e~~~ 135 (136)
.+++|||+|||. ++++++|+++|++||.|.++.+++++.+|.+ +.|||+|.+.|+|.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~ 68 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAK 68 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHH
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHH
Confidence 467899999999 9999999999999999999999999997777 55999999998875
No 269
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.47 E-value=6.7e-14 Score=85.48 Aligned_cols=58 Identities=16% Similarity=0.312 Sum_probs=51.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 78 IKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 78 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
...++|||+|||.++++++|+++|++||.|..|.++.+..+...+.|||+|.+.|+|.
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~ 62 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAK 62 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHH
Confidence 3568999999999999999999999999999999999984444467999999999875
No 270
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=8.3e-14 Score=83.32 Aligned_cols=58 Identities=14% Similarity=0.241 Sum_probs=51.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCC-CCc-cceEeecCcccccc
Q psy6353 77 SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLA-TEN-GKYYSGLGGRERLR 135 (136)
Q Consensus 77 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~-~~~-~~~fv~f~~~e~~~ 135 (136)
....++|||+|||..+++++|+++|++|| |..|.++.++.+ +.. +.|||+|.+.|+|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~ 71 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLL 71 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHH
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHH
Confidence 34668999999999999999999999999 999999999876 555 56999999999875
No 271
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=4.5e-14 Score=84.16 Aligned_cols=59 Identities=24% Similarity=0.402 Sum_probs=53.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCc-cceEeecCcccccc
Q psy6353 77 SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATEN-GKYYSGLGGRERLR 135 (136)
Q Consensus 77 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~-~~~fv~f~~~e~~~ 135 (136)
....++|||+|||..+++++|+++|++||.|..+.+++++.++.. +.|||+|.+.|+|.
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~ 68 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 68 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHH
Confidence 346789999999999999999999999999999999999887776 56999999999875
No 272
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.47 E-value=1.3e-13 Score=82.31 Aligned_cols=58 Identities=21% Similarity=0.351 Sum_probs=52.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCc-cceEeecCcccccc
Q psy6353 77 SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATEN-GKYYSGLGGRERLR 135 (136)
Q Consensus 77 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~-~~~fv~f~~~e~~~ 135 (136)
....++|||+|||..+++++|+++|++|| |..|.+++++.++.. +.|||+|.+.|+|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~ 70 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLK 70 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHH
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHH
Confidence 34678999999999999999999999997 999999999988877 45999999999875
No 273
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=6.4e-14 Score=83.65 Aligned_cols=53 Identities=15% Similarity=0.203 Sum_probs=48.1
Q ss_pred CCCceEEEcCCCC-CCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 78 IKGANLYVSGLPK-HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 78 ~~~~~l~v~nl~~-~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
.+.++|||+|||. .+|+++|+++|++||.|.++.+++++ +.|||+|++.|+|.
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k-----g~aFVef~~~~~A~ 66 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI-----NEAFIEMATTEDAQ 66 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS-----SCEEEEESSHHHHH
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC-----CEEEEEECCHHHHH
Confidence 4678999999999 99999999999999999999998753 67999999999874
No 274
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=5.7e-14 Score=85.48 Aligned_cols=59 Identities=10% Similarity=0.135 Sum_probs=51.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhcCCCce-EEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 77 SIKGANLYVSGLPKHMSQQELESLFSPYGRI-ITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 77 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v-~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
....++|||+|||..+|+++|+++|++||.| ..|.++.|+....++.|||+|.+.|+|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~ 71 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDAR 71 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHH
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHH
Confidence 3467899999999999999999999999999 8899999994334577999999999875
No 275
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.46 E-value=4.3e-14 Score=81.91 Aligned_cols=57 Identities=16% Similarity=0.388 Sum_probs=51.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCC--ccceEeecCcccccc
Q psy6353 79 KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATE--NGKYYSGLGGRERLR 135 (136)
Q Consensus 79 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~--~~~~fv~f~~~e~~~ 135 (136)
..++|||+|||.++++++|+++|++||.|..+.++.+..++. .+.|||+|.+.|+|.
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~ 61 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAE 61 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHH
Confidence 468999999999999999999999999999999999987654 467999999999875
No 276
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.46 E-value=1.1e-13 Score=82.17 Aligned_cols=54 Identities=9% Similarity=0.095 Sum_probs=48.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 77 SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 77 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
..++++|||+|||.++|+++|+++|++||+|.++.++++ ++.|||+|++.|+|.
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~-----kg~AFVef~~~~~A~ 71 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK-----KRQALVEFEDVLGAC 71 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT-----TTEEEEEESSHHHHH
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC-----CCEEEEEECCHHHHH
Confidence 346789999999999999999999999999999999853 478999999999875
No 277
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=8.4e-14 Score=84.88 Aligned_cols=57 Identities=12% Similarity=0.352 Sum_probs=52.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCc-cceEeecCcccccc
Q psy6353 79 KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATEN-GKYYSGLGGRERLR 135 (136)
Q Consensus 79 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~-~~~fv~f~~~e~~~ 135 (136)
..++|||+|||..+++++|+++|++||.|..|.+++++.++.. +.|||+|.+.++|.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~ 83 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVD 83 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHH
Confidence 4579999999999999999999999999999999999887776 56999999999874
No 278
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=1.4e-13 Score=83.56 Aligned_cols=58 Identities=34% Similarity=0.666 Sum_probs=51.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCc-cceEeecCcccccc
Q psy6353 77 SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATEN-GKYYSGLGGRERLR 135 (136)
Q Consensus 77 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~-~~~fv~f~~~e~~~ 135 (136)
....++|||+|||..+++++|+++|++||.|..+.+++++ ++.. +.+||+|.+.|+|.
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~ 80 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCE 80 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHH
Confidence 3467899999999999999999999999999999999998 5554 66999999999874
No 279
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.45 E-value=7.4e-14 Score=84.34 Aligned_cols=59 Identities=19% Similarity=0.291 Sum_probs=53.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCc-cceEeecCcccccc
Q psy6353 77 SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATEN-GKYYSGLGGRERLR 135 (136)
Q Consensus 77 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~-~~~fv~f~~~e~~~ 135 (136)
....++|||+|||..+++++|+++|++||.|..+.++.+..+|.. +.|||+|.+.|+|.
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~ 82 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQAL 82 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHH
Confidence 346789999999999999999999999999999999999877776 56999999999874
No 280
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.45 E-value=2.4e-13 Score=82.69 Aligned_cols=58 Identities=17% Similarity=0.111 Sum_probs=53.3
Q ss_pred HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeC
Q psy6353 13 YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR 72 (136)
Q Consensus 13 l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~ 72 (136)
|++.|++||.|.++.+++. .++|++||+|.+.++|++|+..|||..++||.|.+.++.
T Consensus 34 l~~~f~kfG~V~~v~i~~~--~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~v~~~~ 91 (114)
T 3s6e_A 34 VIEECNKHGGVIHIYVDKN--SAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVP 91 (114)
T ss_dssp HHHHHTTTTCCSEEEECTT--CTTCCEEEECSSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred HHHHHhccCCEEEEEEecC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEEc
Confidence 8999999999999998763 258999999999999999999999999999999999875
No 281
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.45 E-value=1.6e-13 Score=82.24 Aligned_cols=53 Identities=11% Similarity=0.139 Sum_probs=47.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 78 IKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 78 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
.+.++|||+|||..+++++|+++|++||.|..+.++++ ++.|||+|++.|+|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~ 65 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF-----KRQALVEFENIDSAK 65 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT-----TTEEEEEESSHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC-----CCEEEEEECCHHHHH
Confidence 35689999999999999999999999999999998864 478999999999874
No 282
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.45 E-value=1.3e-13 Score=82.86 Aligned_cols=58 Identities=19% Similarity=0.294 Sum_probs=52.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCC-ccceEeecCcccccc
Q psy6353 77 SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATE-NGKYYSGLGGRERLR 135 (136)
Q Consensus 77 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~-~~~~fv~f~~~e~~~ 135 (136)
....++|||+|||..+++++|+++|++||.|..+.++.+. ++. .+.|||+|.+.|+|.
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~ 84 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADAL 84 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHH
Confidence 3467899999999999999999999999999999999999 555 467999999999875
No 283
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=7.3e-14 Score=82.49 Aligned_cols=56 Identities=18% Similarity=0.188 Sum_probs=51.3
Q ss_pred CCCceEEEcCCCCCCCHHHHH----HhhcCCCceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 78 IKGANLYVSGLPKHMSQQELE----SLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 78 ~~~~~l~v~nl~~~~t~~~l~----~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
....+|||+|||..+++++|+ ++|++||.|.+|.++.++.+ ++.|||+|.+.|+|.
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~--rg~afV~f~~~~~A~ 66 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY--QLKAVVQMENLQDAI 66 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST--TCCEEEEESSHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC--CeEEEEEECCHHHHH
Confidence 356899999999999999999 99999999999999999877 678999999999875
No 284
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.44 E-value=7e-14 Score=82.73 Aligned_cols=57 Identities=18% Similarity=0.240 Sum_probs=50.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCC---CCCc-cceEeecCcccccc
Q psy6353 79 KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNL---ATEN-GKYYSGLGGRERLR 135 (136)
Q Consensus 79 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~---~~~~-~~~fv~f~~~e~~~ 135 (136)
..++|||+|||..+++++|+++|++||.|..+.++.++. ++.. +.|||+|.+.|+|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~ 64 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQ 64 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHH
Confidence 568999999999999999999999999999999999876 3344 66999999999875
No 285
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.44 E-value=9.5e-14 Score=89.01 Aligned_cols=57 Identities=12% Similarity=0.233 Sum_probs=51.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhcCCC--ceEEEEEEeCCCCCCc-cceEeecCcccccc
Q psy6353 79 KGANLYVSGLPKHMSQQELESLFSPYG--RIITSRILCDNLATEN-GKYYSGLGGRERLR 135 (136)
Q Consensus 79 ~~~~l~v~nl~~~~t~~~l~~~f~~~G--~v~~~~i~~~~~~~~~-~~~fv~f~~~e~~~ 135 (136)
..++|||+|||..+|+++|+++|++|| .|..++++.|+.+|.+ |+|||+|.+.|+|.
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~ 113 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVH 113 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHH
Confidence 457999999999999999999999999 9999999999988887 55999999999875
No 286
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=1.1e-13 Score=80.38 Aligned_cols=53 Identities=17% Similarity=0.291 Sum_probs=48.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 79 KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 79 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
..++|||+|||.++++++|+++|++||.|..+.++.+ .++.|||+|.+.|+|.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~ 56 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP----FRAFAFVTFADDQIAQ 56 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS----CCSCCEEECSCHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC----CCCEEEEEECCHHHHH
Confidence 5689999999999999999999999999999999875 4578999999999874
No 287
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=6.5e-14 Score=84.66 Aligned_cols=56 Identities=16% Similarity=0.262 Sum_probs=50.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 79 KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 79 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
...+|||+|||.++|+++|+++|++| .|..|.|+.|+.+..+|.|||+|.+.|+|.
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~ 70 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTF 70 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHH
Confidence 45789999999999999999999999 899999999987555577999999999875
No 288
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=5.8e-13 Score=79.20 Aligned_cols=59 Identities=17% Similarity=0.256 Sum_probs=52.6
Q ss_pred HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCCCC
Q psy6353 13 YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76 (136)
Q Consensus 13 l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~~~ 76 (136)
|+++|++||.|.++.++. +++|||||+|.+.++|+.|+..+++ +.+++|+|.++.++..
T Consensus 34 L~~~F~~~G~V~~v~i~~---~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 34 LLRLLQKYGEVLNLVLSS---KKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQPQ 92 (100)
T ss_dssp HHHHHHTTSCEEEEEEES---SSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCCC
T ss_pred HHHHHHhcCCEEEEEEcc---CCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCCC
Confidence 999999999999999874 7899999999999999999997444 6799999999887654
No 289
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.43 E-value=9.7e-14 Score=87.01 Aligned_cols=58 Identities=16% Similarity=0.303 Sum_probs=51.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhcCCCc---eEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 78 IKGANLYVSGLPKHMSQQELESLFSPYGR---IITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 78 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~---v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
....+|||+|||.++|+++|+++|++||. |..|.+++|+.+..++.|||+|.+.|+|.
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~ 102 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVK 102 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHH
Confidence 46789999999999999999999999999 88999999988444467999999999875
No 290
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.43 E-value=1.2e-13 Score=84.53 Aligned_cols=58 Identities=14% Similarity=0.281 Sum_probs=51.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhcCCCc---eEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 78 IKGANLYVSGLPKHMSQQELESLFSPYGR---IITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 78 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~---v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
...++|||+|||.++|+++|+++|++||. |..|+++.+..+..++.|||+|.+.|+|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~ 75 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVK 75 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHH
Confidence 46789999999999999999999999999 89999999988444567999999999875
No 291
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=1.4e-13 Score=83.48 Aligned_cols=60 Identities=18% Similarity=0.316 Sum_probs=53.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhcCCCceE--------EEEEEeCCCCCCc-cceEeecCcccccc
Q psy6353 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRII--------TSRILCDNLATEN-GKYYSGLGGRERLR 135 (136)
Q Consensus 76 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~--------~~~i~~~~~~~~~-~~~fv~f~~~e~~~ 135 (136)
+....++|||+|||..+++++|+++|++||.|. .+.++.++.++.. +.|||+|.+.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~ 79 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAK 79 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHH
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHH
Confidence 345778999999999999999999999999999 6999999777776 56999999999875
No 292
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.43 E-value=1.7e-13 Score=85.90 Aligned_cols=58 Identities=24% Similarity=0.367 Sum_probs=52.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCc-cceEeecCcccccc
Q psy6353 78 IKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATEN-GKYYSGLGGRERLR 135 (136)
Q Consensus 78 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~-~~~fv~f~~~e~~~ 135 (136)
...++|||+|||..+++++|+++|++||.|..+.+++++.++.. +.|||+|.+.|+|.
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~ 119 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAA 119 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHH
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHH
Confidence 46789999999999999999999999999999999999877776 55999999999875
No 293
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.43 E-value=2.6e-13 Score=83.91 Aligned_cols=57 Identities=18% Similarity=0.286 Sum_probs=50.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhcCCCceE--EEEEEeCCCCCCccceEeecCcccccc
Q psy6353 78 IKGANLYVSGLPKHMSQQELESLFSPYGRII--TSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 78 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~--~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
....+|||+|||.++|+++|+++|++| .|. .|.|+.|+.+..+|.|||+|.+.|+|.
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~ 98 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAE 98 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHH
Confidence 456889999999999999999999999 566 899999988444577999999999875
No 294
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=8.9e-14 Score=83.09 Aligned_cols=57 Identities=18% Similarity=0.380 Sum_probs=52.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCc-cceEeecCcccccc
Q psy6353 79 KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATEN-GKYYSGLGGRERLR 135 (136)
Q Consensus 79 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~-~~~fv~f~~~e~~~ 135 (136)
..++|||+|||..+++++|+++|++||.|..+.+++++.+|.+ +.|||+|.+.|+|.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~ 64 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETAL 64 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHH
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHH
Confidence 4578999999999999999999999999999999999877776 56999999999875
No 295
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=2.9e-13 Score=79.01 Aligned_cols=58 Identities=12% Similarity=0.360 Sum_probs=50.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 77 SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 77 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
.....+|||+|||.++++++|+++|++| .|..+.++++..+..++.|||+|.+.|+|.
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~ 64 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVK 64 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHH
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHH
Confidence 4467899999999999999999999999 899999999944444467999999999875
No 296
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.42 E-value=1.2e-13 Score=86.78 Aligned_cols=58 Identities=24% Similarity=0.410 Sum_probs=53.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCc-cceEeecCcccccc
Q psy6353 78 IKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATEN-GKYYSGLGGRERLR 135 (136)
Q Consensus 78 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~-~~~fv~f~~~e~~~ 135 (136)
...++|||+|||.++++++|+++|++||.|..|.+++++.++.. +.|||+|.+.|+|.
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~ 98 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQ 98 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHH
Confidence 45689999999999999999999999999999999999988876 55999999999875
No 297
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.42 E-value=1.9e-13 Score=84.43 Aligned_cols=59 Identities=19% Similarity=0.316 Sum_probs=53.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCc-cceEeecCcccccc
Q psy6353 77 SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATEN-GKYYSGLGGRERLR 135 (136)
Q Consensus 77 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~-~~~fv~f~~~e~~~ 135 (136)
....++|||+|||..+|+++|+++|++||.|..|.++.++.++.. +.|||+|.+.|+|.
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~ 78 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQ 78 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHH
Confidence 346789999999999999999999999999999999999877775 66999999999874
No 298
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.42 E-value=3.3e-13 Score=78.82 Aligned_cols=56 Identities=16% Similarity=0.262 Sum_probs=49.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCC-ccceEeecCcccccc
Q psy6353 78 IKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATE-NGKYYSGLGGRERLR 135 (136)
Q Consensus 78 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~-~~~~fv~f~~~e~~~ 135 (136)
...++|||+|||..+++++|+++|++||.|..+.++++ ++. ++.+||+|.+.|+|.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~ 62 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAE 62 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHH
Confidence 46789999999999999999999999999999999985 444 466999999999875
No 299
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.42 E-value=1.8e-13 Score=82.93 Aligned_cols=59 Identities=17% Similarity=0.250 Sum_probs=51.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHH---HhhcCCCceEEEEEEeCCCCCCc----cceEeecCcccccc
Q psy6353 77 SIKGANLYVSGLPKHMSQQELE---SLFSPYGRIITSRILCDNLATEN----GKYYSGLGGRERLR 135 (136)
Q Consensus 77 ~~~~~~l~v~nl~~~~t~~~l~---~~f~~~G~v~~~~i~~~~~~~~~----~~~fv~f~~~e~~~ 135 (136)
....++|||+|||..+++++|+ ++|++||+|..+.++++..++.. +.|||+|.+.|+|.
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~ 77 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDAL 77 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHH
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHH
Confidence 3467899999999999999999 99999999999999999875433 47999999999875
No 300
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.42 E-value=9e-14 Score=82.68 Aligned_cols=58 Identities=14% Similarity=0.239 Sum_probs=49.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCC-CCCCc-cceEeecCcccccc
Q psy6353 77 SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN-LATEN-GKYYSGLGGRERLR 135 (136)
Q Consensus 77 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~-~~~fv~f~~~e~~~ 135 (136)
....++|||+|||.++++++|+++|++|| |..+.++++. .+|.+ +.|||+|.+.|+|.
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~ 75 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLL 75 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHH
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHH
Confidence 34678999999999999999999999999 9999999998 45655 66999999999875
No 301
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.41 E-value=2.8e-13 Score=83.53 Aligned_cols=57 Identities=23% Similarity=0.315 Sum_probs=51.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCC-ccceEeecCcccccc
Q psy6353 78 IKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATE-NGKYYSGLGGRERLR 135 (136)
Q Consensus 78 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~-~~~~fv~f~~~e~~~ 135 (136)
..+++|||+|||..+++++|+++|++||.|..+.++.+. +|. ++.|||+|.+.|+|.
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~ 90 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADAL 90 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHH
Confidence 456899999999999999999999999999999999998 554 467999999999875
No 302
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.41 E-value=1e-13 Score=83.49 Aligned_cols=59 Identities=12% Similarity=0.108 Sum_probs=52.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhcCCCc---eEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 77 SIKGANLYVSGLPKHMSQQELESLFSPYGR---IITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 77 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~---v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
.....+|||+|||.++|+++|+++|++||. |..+.++.++.+..+|.|||+|.+.|+|.
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~ 69 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQ 69 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHH
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHH
Confidence 346789999999999999999999999998 89999999988444567999999999875
No 303
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.41 E-value=1.4e-13 Score=84.73 Aligned_cols=57 Identities=28% Similarity=0.471 Sum_probs=51.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCc-cceEeecCcccccc
Q psy6353 79 KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATEN-GKYYSGLGGRERLR 135 (136)
Q Consensus 79 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~-~~~fv~f~~~e~~~ 135 (136)
..++|||+|||..+|+++|+++|++||.|..+.+++++.++.. +.|||+|.+.|++.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~ 92 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVD 92 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHH
Confidence 3579999999999999999999999999999999999877776 56999999999874
No 304
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.41 E-value=1.2e-13 Score=79.07 Aligned_cols=54 Identities=13% Similarity=0.210 Sum_probs=46.3
Q ss_pred CceEEEcCCCCCC------CHHHHHHhhcCCCceEEEEEEeCCCCCCc-cceEeecCcccccc
Q psy6353 80 GANLYVSGLPKHM------SQQELESLFSPYGRIITSRILCDNLATEN-GKYYSGLGGRERLR 135 (136)
Q Consensus 80 ~~~l~v~nl~~~~------t~~~l~~~f~~~G~v~~~~i~~~~~~~~~-~~~fv~f~~~e~~~ 135 (136)
+++|||+|||..+ ++++|+++|++||+|..+.+++ .+|.+ +.|||+|.+.++|.
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~--~~g~~~g~afV~f~~~~~A~ 61 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAV 61 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCC--BTTBCCCEEEEEESSHHHHH
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecC--CCCcEeEEEEEEECCHHHHH
Confidence 3689999999999 7799999999999999999883 34444 67999999999874
No 305
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.41 E-value=3.4e-13 Score=86.25 Aligned_cols=59 Identities=22% Similarity=0.265 Sum_probs=53.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCc-cceEeecCcccccc
Q psy6353 77 SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATEN-GKYYSGLGGRERLR 135 (136)
Q Consensus 77 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~-~~~fv~f~~~e~~~ 135 (136)
....++|||+|||..+|+++|+++|++||+|..|.++.++.++.. +.|||+|.+.|+|.
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~ 95 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAE 95 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHH
Confidence 346789999999999999999999999999999999999988876 56999999999874
No 306
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=1.6e-13 Score=83.52 Aligned_cols=57 Identities=14% Similarity=0.311 Sum_probs=50.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCC---CCc-cceEeecCcccccc
Q psy6353 78 IKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLA---TEN-GKYYSGLGGRERLR 135 (136)
Q Consensus 78 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~---~~~-~~~fv~f~~~e~~~ 135 (136)
...++|||+|||.++++++|+++|++||+|. +.++.+..+ |.+ ++|||+|.+.|+|.
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~ 66 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQ 66 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHH
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHH
Confidence 3568999999999999999999999999999 888888776 444 66999999999874
No 307
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.40 E-value=1e-13 Score=82.06 Aligned_cols=58 Identities=21% Similarity=0.166 Sum_probs=51.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCc-cceEeecCcccccc
Q psy6353 78 IKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATEN-GKYYSGLGGRERLR 135 (136)
Q Consensus 78 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~-~~~fv~f~~~e~~~ 135 (136)
...++|||+|||..+++++|+++|++||.|..+.++.+..++.. +.|||+|.+.|+|.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~ 71 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEAT 71 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHH
Confidence 35688999999999999999999999999998888888877776 56999999999875
No 308
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.40 E-value=7.4e-14 Score=82.13 Aligned_cols=57 Identities=21% Similarity=0.187 Sum_probs=51.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCc-cceEeecCcccccc
Q psy6353 79 KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATEN-GKYYSGLGGRERLR 135 (136)
Q Consensus 79 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~-~~~fv~f~~~e~~~ 135 (136)
..++|||+|||..+++++|+++|++||.|..+.++.++.++.. +.+||+|.+.|+|.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~ 71 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEAT 71 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHH
Confidence 4589999999999999999999999999999999998888766 56999999999875
No 309
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=1.5e-13 Score=84.76 Aligned_cols=57 Identities=14% Similarity=0.135 Sum_probs=49.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhcCCCce----EEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 79 KGANLYVSGLPKHMSQQELESLFSPYGRI----ITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 79 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v----~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
...+|||+|||.++|+++|+++|++||.| ..|.|+.+..+..++.|||+|.+.|+|.
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~ 82 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQ 82 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHH
Confidence 56899999999999999999999999975 6899999964444467999999999875
No 310
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=4.4e-13 Score=77.18 Aligned_cols=54 Identities=20% Similarity=0.349 Sum_probs=48.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 77 SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 77 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
....++|||+|||..+++++|+++|++||.|..+.++++ ++.|||+|.+.|+|.
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~-----kg~afV~f~~~~~A~ 62 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR-----QQCAFIQFATRQAAE 62 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG-----GTEEEEEESSHHHHH
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC-----CCEEEEEECCHHHHH
Confidence 456789999999999999999999999999999999974 477999999999874
No 311
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.40 E-value=1.2e-13 Score=85.96 Aligned_cols=57 Identities=16% Similarity=0.260 Sum_probs=50.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhcCCCceEE--EEEEeCCCCCCc-cceEeecCcccccc
Q psy6353 78 IKGANLYVSGLPKHMSQQELESLFSPYGRIIT--SRILCDNLATEN-GKYYSGLGGRERLR 135 (136)
Q Consensus 78 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~--~~i~~~~~~~~~-~~~fv~f~~~e~~~ 135 (136)
...++|||+|||..+|+++|+++|++||.|.. |+|++|+.+|.+ |++||+|.+. ++.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~ 80 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAA 80 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHH
Confidence 46789999999999999999999999999977 999999977776 5599999998 553
No 312
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.40 E-value=3.5e-13 Score=81.66 Aligned_cols=54 Identities=22% Similarity=0.325 Sum_probs=47.9
Q ss_pred CCCCceEEEcCCCCC-CCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 77 SIKGANLYVSGLPKH-MSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 77 ~~~~~~l~v~nl~~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
...+++|||+|||.+ +++++|+++|++||.|.++.+++. ++.|||+|++.|+|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~ 76 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM-----KSQAFIEMETREDAM 76 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT-----TTEEEEECSSHHHHH
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC-----CCEEEEEECCHHHHH
Confidence 346789999999998 999999999999999999999853 477999999999874
No 313
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.39 E-value=3e-13 Score=81.09 Aligned_cols=60 Identities=12% Similarity=0.158 Sum_probs=49.9
Q ss_pred CCCCCCCceEEEcCCCCCC------CHHHHHHhhcCCCceEEEEEEeCCCCCCc-cceEeecCcccccc
Q psy6353 74 SSESIKGANLYVSGLPKHM------SQQELESLFSPYGRIITSRILCDNLATEN-GKYYSGLGGRERLR 135 (136)
Q Consensus 74 ~~~~~~~~~l~v~nl~~~~------t~~~l~~~f~~~G~v~~~~i~~~~~~~~~-~~~fv~f~~~e~~~ 135 (136)
.......++|||+|||..+ |+++|+++|++||.|..+.+++ .+|.+ +.|||+|.+.|+|.
T Consensus 9 ~~~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~--~~g~~~G~afV~f~~~~~A~ 75 (105)
T 2nlw_A 9 QEADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAV 75 (105)
T ss_dssp CSCCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCC--BTTBSCCEEEEEECSSSHHH
T ss_pred CCCCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeC--CCCCeeeEEEEEECCHHHHH
Confidence 3344567899999999999 7899999999999999999983 34444 67999999999874
No 314
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.39 E-value=5.2e-14 Score=82.05 Aligned_cols=54 Identities=19% Similarity=0.453 Sum_probs=49.4
Q ss_pred ceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCc-cceEeecCcccccc
Q psy6353 81 ANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATEN-GKYYSGLGGRERLR 135 (136)
Q Consensus 81 ~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~-~~~fv~f~~~e~~~ 135 (136)
++|||+|||.++++++|+++|++||.|..+.+++++.++.+ +.|||+|.+.| |.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~ 56 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VS 56 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HH
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HH
Confidence 57999999999999999999999999999999999987776 55999999998 64
No 315
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=1.6e-13 Score=84.66 Aligned_cols=58 Identities=14% Similarity=0.249 Sum_probs=50.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCc-cceEeecCcccccc
Q psy6353 78 IKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATEN-GKYYSGLGGRERLR 135 (136)
Q Consensus 78 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~-~~~fv~f~~~e~~~ 135 (136)
....+|||+|||..+|+++|+++|++||.|..+.++.+..+|.. +.|||+|.+.|+|.
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~ 81 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYK 81 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHH
Confidence 45689999999999999999999999999998666666666665 66999999999875
No 316
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=6.2e-13 Score=80.12 Aligned_cols=57 Identities=16% Similarity=0.297 Sum_probs=49.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 77 SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 77 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
....++|||+|||..+++++|+++|++||.|..|.+..+. ..++.|||+|.+.|+|.
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~--~~~g~afV~f~~~~~A~ 75 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRR--GGPPFAFVEFEDPRDAE 75 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSS--SSSCCEEEEESCHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC--CCCcEEEEEECCHHHHH
Confidence 3467899999999999999999999999999999997653 34577999999999875
No 317
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.39 E-value=4.7e-13 Score=80.60 Aligned_cols=52 Identities=23% Similarity=0.280 Sum_probs=48.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 78 IKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 78 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
...++|||+|||.++++++|+++|++||.|..|.++.+ +.|||+|.+.|+|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~------g~afV~f~~~~~a~ 64 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMT 64 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT------TEEEEEESSHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC------CEEEEEECCHHHHH
Confidence 46789999999999999999999999999999999987 78999999998874
No 318
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.38 E-value=7.9e-13 Score=80.36 Aligned_cols=55 Identities=22% Similarity=0.329 Sum_probs=49.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 79 KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 79 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
.+++|||+|||..+++++|+++|++||.|..+.++.+..+ .+.|||+|.+.++|.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~--~g~afV~f~~~~~A~ 61 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPET--RGTAYVVYEDIFDAK 61 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTT--TTCEEEEESSHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCC--CcEEEEEECCHHHHH
Confidence 5689999999999999999999999999999999976433 578999999999874
No 319
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=2.3e-13 Score=81.95 Aligned_cols=57 Identities=12% Similarity=0.247 Sum_probs=51.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhcCCCc-eEEEEEE-eCCCCCCc-cceEeecCcccccc
Q psy6353 79 KGANLYVSGLPKHMSQQELESLFSPYGR-IITSRIL-CDNLATEN-GKYYSGLGGRERLR 135 (136)
Q Consensus 79 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~-v~~~~i~-~~~~~~~~-~~~fv~f~~~e~~~ 135 (136)
..++|||+|||..+++++|+++|.+||. |..+.++ .+..++.. +.|||+|.+.|+|.
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~ 66 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAA 66 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHH
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHH
Confidence 5689999999999999999999999998 9999998 77777665 56999999999874
No 320
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.37 E-value=3.9e-13 Score=79.40 Aligned_cols=52 Identities=21% Similarity=0.261 Sum_probs=47.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 79 KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 79 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
..++|||+|||..+++++|+++|++||.|..+.+.++ ++.|||+|.+.|+|.
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~-----~g~afV~f~~~~~A~ 67 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG-----DSFAYIQYESLDAAQ 67 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS-----SCCEEEEESSHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC-----CCEEEEEECCHHHHH
Confidence 5689999999999999999999999999999999864 468999999999875
No 321
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.37 E-value=6e-13 Score=90.22 Aligned_cols=57 Identities=18% Similarity=0.345 Sum_probs=51.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhcCCC--ceEEEEEEeCCCCCCc-cceEeecCcccccc
Q psy6353 79 KGANLYVSGLPKHMSQQELESLFSPYG--RIITSRILCDNLATEN-GKYYSGLGGRERLR 135 (136)
Q Consensus 79 ~~~~l~v~nl~~~~t~~~l~~~f~~~G--~v~~~~i~~~~~~~~~-~~~fv~f~~~e~~~ 135 (136)
..++|||+|||..+|+++|+++|++|| .|..|+|++|+.++.+ +++||+|.+.|+|.
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~ 126 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSK 126 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHH
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHH
Confidence 457899999999999999999999999 9999999999888877 55999999999875
No 322
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.37 E-value=2.2e-13 Score=78.62 Aligned_cols=52 Identities=15% Similarity=0.196 Sum_probs=47.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 79 KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 79 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
.+.-|+|+||++.+|+++|+++|.+||+|.++++.. .+|+|||+|.++|+|.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~-----~kGfaFVey~~~~eA~ 57 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL-----NQGIALCKYTTREEAN 57 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET-----TTTEEEEEESSHHHHH
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC-----CCcEEEEEECCHHHHH
Confidence 356799999999999999999999999999999976 4688999999999875
No 323
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.37 E-value=9.8e-13 Score=77.93 Aligned_cols=53 Identities=26% Similarity=0.432 Sum_probs=48.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 78 IKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 78 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
...++|||+|||..+++++|+++|++||.|..+.+.++ ++.|||+|.+.|+|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~-----kg~afV~f~~~~~a~ 65 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD-----KGFGFIRLETRTLAE 65 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT-----TTEEEEECSSSHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC-----CCEEEEEECCHHHHH
Confidence 46689999999999999999999999999999999864 478999999999875
No 324
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=1.4e-12 Score=76.59 Aligned_cols=53 Identities=17% Similarity=0.298 Sum_probs=47.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 79 KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 79 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
..++|||+|||..+++++|+++|++||.|..| +.+..++. .|||+|.+.|+|.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~--~afV~f~~~~~a~ 59 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV--FAIVEMGDVGARE 59 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC--EEEEEESSHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc--EEEEEECCHHHHH
Confidence 55799999999999999999999999999987 66776666 9999999998874
No 325
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.36 E-value=1.5e-12 Score=92.88 Aligned_cols=67 Identities=16% Similarity=0.203 Sum_probs=55.7
Q ss_pred eeecCC--Chhhh---HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeC---Cc--eEEEEee
Q psy6353 2 VYQTLL--NKLFT---YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQ---NK--TIKVSYA 71 (136)
Q Consensus 2 v~v~nl--~~~~~---l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~---g~--~l~v~~~ 71 (136)
|||+|+ +..+| |+++|++||.|.++.+.. +||||||+|.+.++|++|+++|||..+. |+ ++.+.++
T Consensus 21 l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~----~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~~~ 96 (345)
T 3tht_A 21 LVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFV 96 (345)
T ss_dssp EEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT----TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEEC
T ss_pred EEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEEEe
Confidence 799995 56666 999999999999887653 6899999999999999999999998873 45 5666665
Q ss_pred C
Q psy6353 72 R 72 (136)
Q Consensus 72 ~ 72 (136)
.
T Consensus 97 ~ 97 (345)
T 3tht_A 97 E 97 (345)
T ss_dssp S
T ss_pred e
Confidence 3
No 326
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.35 E-value=1.3e-12 Score=76.06 Aligned_cols=51 Identities=22% Similarity=0.511 Sum_probs=46.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 78 IKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 78 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
...++|||+|||.++++++|+++|++||.|..+.++ ++.|||+|.+.|+|.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-------~g~afV~f~~~~~A~ 56 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-------KNYGFVHIEDKTAAE 56 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-------TTEEEEEESSHHHHH
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-------CCEEEEEECCHHHHH
Confidence 467899999999999999999999999999999998 368999999999875
No 327
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.34 E-value=9.1e-13 Score=77.05 Aligned_cols=52 Identities=23% Similarity=0.339 Sum_probs=47.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 77 SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 77 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
....++|||+|||..+++++|+++|++||.|..+.++++ .|||+|.+.|+|.
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~-------~afV~f~~~~~a~ 58 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD-------YAFVHMERAEDAV 58 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS-------EEEEEESCHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC-------EEEEEECCHHHHH
Confidence 446789999999999999999999999999999999853 8999999998874
No 328
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.34 E-value=7.3e-13 Score=79.97 Aligned_cols=67 Identities=15% Similarity=0.404 Sum_probs=53.1
Q ss_pred CCceEEEEeeCCCCC---CCCCceEEEcCCCCC-CCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 62 QNKTIKVSYARPSSE---SIKGANLYVSGLPKH-MSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 62 ~g~~l~v~~~~~~~~---~~~~~~l~v~nl~~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
.|.++.+..+.+... ....++|||+|||.. +++++|+++|++||.|..|.+ .++.|||+|.+.|+|.
T Consensus 6 ~g~~~~~~~s~~~~~~~~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-------~~g~afV~f~~~~~A~ 76 (110)
T 1wf1_A 6 SGMSLKLQASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-------HKGYAFVQYSNERHAR 76 (110)
T ss_dssp CSCCCCCCCCCSCCSCCCTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-------ETTEEEEECSSSHHHH
T ss_pred CCcccccccCCCCCCCCCCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-------eCCEEEEEECCHHHHH
Confidence 355566655443322 234589999999999 999999999999999999998 3478999999999874
No 329
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.34 E-value=4.8e-13 Score=79.54 Aligned_cols=51 Identities=25% Similarity=0.331 Sum_probs=47.1
Q ss_pred ceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 81 ANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 81 ~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
++|||+|||.++|+++|+++|++||+|..+.++.+ .++.|||+|.+.|+|.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~ 51 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN----PPGFAFVEFEDPRDAE 51 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS----SSSEEEEECSSHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC----CCCEEEEEECCHHHHH
Confidence 47999999999999999999999999999999987 5578999999999874
No 330
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.33 E-value=1.1e-12 Score=80.61 Aligned_cols=50 Identities=14% Similarity=0.213 Sum_probs=46.8
Q ss_pred ceEEEcCC----CCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCc-cceEeecCc
Q psy6353 81 ANLYVSGL----PKHMSQQELESLFSPYGRIITSRILCDNLATEN-GKYYSGLGG 130 (136)
Q Consensus 81 ~~l~v~nl----~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~-~~~fv~f~~ 130 (136)
.+|||+|| |+.+++.+|+++|++||+|.+|.++.|+.||.+ |.|||+|.+
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d 57 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYAS 57 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC-
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECC
Confidence 67999999 999999999999999999999999999999998 459999996
No 331
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.33 E-value=9.5e-13 Score=76.67 Aligned_cols=52 Identities=23% Similarity=0.358 Sum_probs=47.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 77 SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 77 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
....++|||+|||..+|+++|+++|++||.|..+.++++ .+||+|.+.|+|.
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~-------~afV~f~~~~~a~ 57 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD-------YAFVHMEKEADAK 57 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS-------CEEEEESCHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC-------EEEEEECCHHHHH
Confidence 346789999999999999999999999999999999853 8999999999874
No 332
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.32 E-value=1.8e-12 Score=78.08 Aligned_cols=52 Identities=25% Similarity=0.537 Sum_probs=47.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 77 SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 77 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
....++|||+|||..+++++|+++|++||.|..+.++ ++.|||+|.+.|+|.
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-------kg~afV~f~~~~~A~ 79 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-------NGFAFVEFEEAESAA 79 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-------TTEEEEECSSHHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEECCHHHHH
Confidence 3467899999999999999999999999999999998 478999999999874
No 333
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.32 E-value=2.2e-12 Score=76.65 Aligned_cols=56 Identities=16% Similarity=0.220 Sum_probs=47.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 77 SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 77 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
....++|||+|||..+++++|+++|++||.| .++.+.....++.|||+|.+.|+|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~ 67 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAK 67 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHH
Confidence 3467899999999999999999999999987 6677744444577999999999875
No 334
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.32 E-value=5.1e-13 Score=80.94 Aligned_cols=66 Identities=17% Similarity=0.091 Sum_probs=48.1
Q ss_pred ceEEEEeeCCCCCCCCCceEEEcCCCCCCCHHHHHHhhcCCC-ceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 64 KTIKVSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPYG-RIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 64 ~~l~v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G-~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
.++.+.++.+. ....+|||+|||.++++++|+++|++|| +|..+.+..+ ..++.|||+|.+.|+|.
T Consensus 15 ~~~~~~~~~~p---~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~---~~rGfaFV~F~~~e~A~ 81 (111)
T 2jvr_A 15 VPRGSHMSKLP---AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR---DFDGTGALEFPSEEILV 81 (111)
T ss_dssp ----------C---CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC---SSSCCEEEEESSHHHHH
T ss_pred eecchhcCCCC---CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC---CCCCEEEEEECCHHHHH
Confidence 34555555433 2568999999999999999999999999 8999988643 24578999999999875
No 335
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.31 E-value=1.2e-12 Score=78.90 Aligned_cols=53 Identities=23% Similarity=0.514 Sum_probs=48.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 78 IKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 78 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
...++|||+|||..+++++|+++|++||.|..|.++++ ++.|||+|.+.|+|.
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~g~afV~f~~~~~a~ 75 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAA 75 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-----TTEEEEEESSHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-----CCEEEEEECCHHHHH
Confidence 35689999999999999999999999999999999986 578999999999874
No 336
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=98.99 E-value=1.7e-13 Score=83.60 Aligned_cols=59 Identities=15% Similarity=0.271 Sum_probs=52.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhcCCCceEE--------EEEEeCCCCCCc-cceEeecCccccccC
Q psy6353 78 IKGANLYVSGLPKHMSQQELESLFSPYGRIIT--------SRILCDNLATEN-GKYYSGLGGRERLRR 136 (136)
Q Consensus 78 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~--------~~i~~~~~~~~~-~~~fv~f~~~e~~~~ 136 (136)
...++|||+|||..+++++|+++|++||.|.. +.++.++.++.. +.|||+|.+.|+|.+
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~ 72 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKA 72 (116)
Confidence 35688999999999999999999999999998 999999877776 569999999998863
No 337
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=7.5e-13 Score=77.94 Aligned_cols=55 Identities=18% Similarity=0.340 Sum_probs=49.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhcCCCceEEE-EEEeCCCCCCccceEeecCcccccc
Q psy6353 78 IKGANLYVSGLPKHMSQQELESLFSPYGRIITS-RILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 78 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~-~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
...++|||+|||..+++++|+++|++||.|..+ .++.++.++. |||+|.+.++|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~---afV~f~~~~~a~ 68 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAV---VNVTYSSKDQAR 68 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEE---EEEEESSHHHHH
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCE---EEEEECCHHHHH
Confidence 356899999999999999999999999999999 5888876665 999999999774
No 338
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.31 E-value=6.3e-13 Score=81.00 Aligned_cols=51 Identities=24% Similarity=0.301 Sum_probs=46.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 79 KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 79 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
...+|||+|||.++++++|+++|++||+|..|.++.+ +.|||+|.+.|+|.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~------g~afV~f~~~~~a~ 65 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMT 65 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT------SEEEEEESSHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC------CEEEEEECCHHHHH
Confidence 5689999999999999999999999999999999876 78999999999874
No 339
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.30 E-value=3.2e-12 Score=75.92 Aligned_cols=52 Identities=19% Similarity=0.396 Sum_probs=46.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 79 KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 79 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
..++|||+|||..+++++|+++|++||.|.++.+.+ .++.|||+|.+.|+|.
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~-----~~g~afV~f~~~~~A~ 77 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP-----EKGCCFIKYDTHEQAA 77 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET-----TTTEEEEECSSHHHHH
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec-----CCCEEEEEECCHHHHH
Confidence 468999999999999999999999999999999983 3477999999998774
No 340
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.30 E-value=2.7e-12 Score=75.63 Aligned_cols=52 Identities=27% Similarity=0.507 Sum_probs=46.0
Q ss_pred CCCCceEEEcCCCC-CCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 77 SIKGANLYVSGLPK-HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 77 ~~~~~~l~v~nl~~-~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
....++|||+|||. .+++++|+++|++||.|..+.+. ++.|||+|.+.|+|.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~ 59 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVR 59 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-------TTEEEEEESCHHHHH
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHH
Confidence 34678999999998 99999999999999999999985 478999999999874
No 341
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.29 E-value=2.2e-12 Score=76.95 Aligned_cols=51 Identities=22% Similarity=0.332 Sum_probs=46.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 78 IKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 78 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
...++|||+|||..+|+++|+++|++||.|..+.+++ +.+||+|.+.|+|.
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~-------~~afV~f~~~~~a~ 59 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK-------DYAFIHFDERDGAV 59 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS-------SCEEEEESSHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC-------CEEEEEeCCHHHHH
Confidence 4568999999999999999999999999999999884 48999999999875
No 342
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.28 E-value=2.9e-12 Score=83.65 Aligned_cols=57 Identities=23% Similarity=0.319 Sum_probs=50.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 79 KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 79 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
.+++|||+|||..+++++|+++|++||.|..|.++.+......+.|||+|.+.|+|.
T Consensus 87 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~ 143 (177)
T 2f3j_A 87 TGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADAL 143 (177)
T ss_dssp TCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHH
Confidence 468999999999999999999999999999999999983334467999999999874
No 343
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.28 E-value=2.3e-12 Score=78.02 Aligned_cols=52 Identities=13% Similarity=0.093 Sum_probs=46.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 79 KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 79 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
..++|||+|||..+++++|+++|++||.|..|.++. .++.|||+|.+.|+|.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~-----~~g~afV~f~~~~~A~ 60 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE-----GGITAIVEFLEPLEAR 60 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS-----SSSCEEEEESCHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC-----CCCEEEEEeCCHHHHH
Confidence 457999999999999999999999999999999874 3467999999999875
No 344
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.26 E-value=6e-12 Score=74.37 Aligned_cols=52 Identities=29% Similarity=0.530 Sum_probs=46.7
Q ss_pred CCCCceEEEcCCCC-CCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 77 SIKGANLYVSGLPK-HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 77 ~~~~~~l~v~nl~~-~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
....++|||+|||. .+++++|+++|++||.|..+.+. ++.|||+|.+.|+|.
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~ 71 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVR 71 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-------SSEEEEEESSHHHHH
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHH
Confidence 34678999999998 99999999999999999999983 578999999999874
No 345
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.25 E-value=5.6e-12 Score=78.10 Aligned_cols=57 Identities=16% Similarity=0.272 Sum_probs=47.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHH----HhhcCCCceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 77 SIKGANLYVSGLPKHMSQQELE----SLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 77 ~~~~~~l~v~nl~~~~t~~~l~----~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
....++|||+|||..+++++|+ ++|++||.|..|.+..+ ...+|.|||+|.+.|+|.
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~--~~~rG~aFV~F~~~~~A~ 86 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLS--DDNSGKAYIVFATQESAQ 86 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCC--CSSCCCEEEEESSHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccC--CCcCCEEEEEECCHHHHH
Confidence 3467899999999999999876 69999999999887642 334577999999998874
No 346
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.25 E-value=2.2e-12 Score=78.23 Aligned_cols=53 Identities=15% Similarity=0.177 Sum_probs=46.4
Q ss_pred CCCceEEE--cCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 78 IKGANLYV--SGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 78 ~~~~~l~v--~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
.+..+||| +|||.++++++|+++|++||+|..+.++.+ +++|||+|.+.|+|.
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~-----rgfaFV~f~~~~~A~ 77 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN-----KPYSFARYRTTEESK 77 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT-----CSCEEEEESSHHHHH
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-----CCEEEEEECCHHHHH
Confidence 35688999 669999999999999999999999988642 478999999999875
No 347
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=5.4e-12 Score=74.43 Aligned_cols=54 Identities=15% Similarity=0.268 Sum_probs=46.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 78 IKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 78 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
...++|||+|||..+++++|+++|++||.|. +.++.+ ..++.|||+|.+.++|.
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~---~~~g~afV~f~~~~~a~ 70 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ---GPRRRAFLHYPDSAAAQ 70 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE---TTTTEEEEECSSHHHHH
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC---CCCcEEEEEECCHHHHH
Confidence 3568999999999999999999999999997 677764 34477999999998874
No 348
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.24 E-value=1.2e-11 Score=73.45 Aligned_cols=59 Identities=20% Similarity=0.347 Sum_probs=49.6
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCc-cceEeecCcccccc
Q psy6353 74 SSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATEN-GKYYSGLGGRERLR 135 (136)
Q Consensus 74 ~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~-~~~fv~f~~~e~~~ 135 (136)
.......++|||+|||..+++++|+++|++|+ .+.++.+..++.. +.|||+|.+.|+|.
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~ 68 (102)
T 2fc8_A 9 NARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAK 68 (102)
T ss_dssp SSSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHH
T ss_pred CCCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHH
Confidence 33445778999999999999999999999874 6788888877776 56999999999874
No 349
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.23 E-value=1.8e-12 Score=76.37 Aligned_cols=56 Identities=16% Similarity=0.345 Sum_probs=47.8
Q ss_pred CCCceEEEcCCCCCCCHHHHH----HhhcCCCceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 78 IKGANLYVSGLPKHMSQQELE----SLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 78 ~~~~~l~v~nl~~~~t~~~l~----~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
...++|||+|||..+++++|+ ++|++||.|..+.++.+ +..++.|||+|.+.|+|.
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~--~~~~g~afV~f~~~~~A~ 65 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRS--LKMRGQAFVIFKEVSSAT 65 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHH--HHHTTCEEEEESSHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcC--CCcCcEEEEEeCCHHHHH
Confidence 467899999999999999999 99999999999988742 223367999999999874
No 350
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.22 E-value=5.1e-12 Score=72.92 Aligned_cols=52 Identities=15% Similarity=0.348 Sum_probs=47.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhcCC----C-------ceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 79 KGANLYVSGLPKHMSQQELESLFSPY----G-------RIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 79 ~~~~l~v~nl~~~~t~~~l~~~f~~~----G-------~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
..++|||+|||.++++++|+++|++| | .|.++.+.++ ++.|||+|.+.|+|.
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~-----kg~afV~f~~~~~a~ 67 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-----KNFAFLEFRSVDETT 67 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS-----SSEEEEEESSHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC-----CcEEEEEcCCHHHHH
Confidence 56899999999999999999999999 8 8999999865 478999999999874
No 351
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.22 E-value=3.2e-13 Score=80.28 Aligned_cols=57 Identities=21% Similarity=0.138 Sum_probs=49.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCc-cceEeecCcccccc
Q psy6353 78 IKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATEN-GKYYSGLGGRERLR 135 (136)
Q Consensus 78 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~-~~~fv~f~~~e~~~ 135 (136)
...++|||+|||.++|+++|+++|++||.|.. .++.+..++.+ +.|||+|.+.|+|.
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~ 72 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLE 72 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHH
Confidence 36789999999999999999999999999888 66667666655 56999999999875
No 352
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.21 E-value=5.3e-11 Score=80.08 Aligned_cols=60 Identities=17% Similarity=0.209 Sum_probs=55.4
Q ss_pred HHHHhccCCCeeEEEEEc------cCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeC
Q psy6353 13 YEKVHLGFSDAEICVFLI------STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR 72 (136)
Q Consensus 13 l~~~f~~~G~v~~~~~~~------~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~ 72 (136)
+.+.|++||.|.++.+++ .+++++|++||+|.+.++|++|+..|||..+.||.|.+.++.
T Consensus 146 l~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 146 VTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp HHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 889999999999999986 245899999999999999999999999999999999998764
No 353
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.21 E-value=2.6e-11 Score=71.74 Aligned_cols=51 Identities=20% Similarity=0.227 Sum_probs=45.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhcCC--CceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 78 IKGANLYVSGLPKHMSQQELESLFSPY--GRIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 78 ~~~~~l~v~nl~~~~t~~~l~~~f~~~--G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
...++|||+|||..+++++|+++|++| |.|..+.+. ++.|||+|.+.|+|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-------~g~afV~f~~~~~A~ 65 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-------RDYAFVHFSNREDAV 65 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-------SSEEEEEESSHHHHH
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-------CCeEEEEeCCHHHHH
Confidence 467899999999999999999999999 999999876 358999999999874
No 354
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.20 E-value=1.8e-11 Score=75.85 Aligned_cols=52 Identities=15% Similarity=0.169 Sum_probs=45.5
Q ss_pred CceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccc-eEeecCcccccc
Q psy6353 80 GANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGK-YYSGLGGRERLR 135 (136)
Q Consensus 80 ~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~-~fv~f~~~e~~~ 135 (136)
--.|||+||+..+|+++|+++|++||+|..|.+..+. +++ |||+|.+.++|.
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~----~gfqAFVef~~~~~A~ 80 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQ 80 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET----TEEEEEEEESCHHHHH
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC----CCcEEEEEECCHHHHH
Confidence 3568899999999999999999999999999988643 356 999999998874
No 355
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.19 E-value=1.3e-11 Score=71.49 Aligned_cols=51 Identities=18% Similarity=0.276 Sum_probs=45.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 79 KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 79 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
..++|||+|||..+++++|+++|++| .|..+.+. ..++.|||+|.+.|+|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-----~~~g~afV~f~~~~~a~ 54 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-----RNKRTAFVTLLNGEQAQ 54 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-----GGGTEEEECCSCHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-----CCCcEEEEEECCHHHHH
Confidence 56889999999999999999999999 99999885 34477999999998874
No 356
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.19 E-value=4.9e-11 Score=68.87 Aligned_cols=55 Identities=24% Similarity=0.366 Sum_probs=50.1
Q ss_pred HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCCC
Q psy6353 13 YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPS 74 (136)
Q Consensus 13 l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~~ 74 (136)
|.+.|++||.|..++++. +.+||+|.+.++|.+|++ |||..+.||.|+|..+.|.
T Consensus 32 L~~~F~~~G~Vi~vr~~~------d~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~lkt~d 86 (91)
T 2dnr_A 32 LLQQFASFGEVILIRFVE------DKMWVTFLEGSSALNVLS-LNGKELLNRTITIALKSPS 86 (91)
T ss_dssp HHHHHHTTCCEEEEEECS------SSEEEEESSHHHHHHGGG-GTTCEETTEEEEEEECCCS
T ss_pred HHHHHHhCCCeEEEEEec------CCEEEEECChHHHHHHHh-cCCeEeCCeEEEEEeCCCC
Confidence 899999999999999876 238999999999999999 9999999999999987754
No 357
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.18 E-value=1.4e-11 Score=74.72 Aligned_cols=54 Identities=20% Similarity=0.380 Sum_probs=45.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhcCCCce----EEEEEEeCCCCCC-ccceEeecCcccccc
Q psy6353 78 IKGANLYVSGLPKHMSQQELESLFSPYGRI----ITSRILCDNLATE-NGKYYSGLGGRERLR 135 (136)
Q Consensus 78 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v----~~~~i~~~~~~~~-~~~~fv~f~~~e~~~ 135 (136)
...++|||+|||..+|+++|+++|++||.| ..+.+. ++. ++.|||+|.+.|+|.
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~----~g~~~g~afV~f~~~~~a~ 81 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM----TGRMRGQAFITFPNKEIAW 81 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE----CSSSCSEEEEECSSHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC----CCccceEEEEEECCHHHHH
Confidence 356899999999999999999999999998 455544 444 467999999999874
No 358
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.17 E-value=1.8e-11 Score=78.65 Aligned_cols=54 Identities=13% Similarity=0.149 Sum_probs=46.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 79 KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 79 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
...+|||+|||..+|+++|+++|++||+|..+.+..+. .++.|||+|.+.|+|.
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~---~rgfAFVeF~d~~~A~ 98 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN---NQFQALLQYADPVSAQ 98 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS---SCEEEEEEESCHHHHH
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC---CCCEEEEEECCHHHHH
Confidence 44679999999999999999999999999999997543 3356999999998874
No 359
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.16 E-value=6.1e-12 Score=73.99 Aligned_cols=55 Identities=15% Similarity=0.168 Sum_probs=44.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 77 SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 77 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
....++|||+|||..+++++|+++|++||.|..+ ......++.|||+|.+.|+|.
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~a~ 67 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAE 67 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE----EETTEEEEEEEEEESSHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe----CCCCCcceEEEEEECCHHHHH
Confidence 3467899999999999999999999999988766 222333467999999999875
No 360
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.15 E-value=1.8e-11 Score=71.56 Aligned_cols=52 Identities=15% Similarity=0.256 Sum_probs=44.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhcCCCc-eEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 78 IKGANLYVSGLPKHMSQQELESLFSPYGR-IITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 78 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~-v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
...++|||+|||.++|+++|+++|++||. |..+.+. ..+.|||+|.+.|+|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~------~~g~afV~f~~~~~A~ 58 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL------KSGYAFVDYPDQNWAI 58 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE------ETTEEEECCSCHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc------CCCEEEEEECCHHHHH
Confidence 35689999999999999999999999999 5556553 2477999999999874
No 361
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.15 E-value=8.1e-11 Score=72.47 Aligned_cols=50 Identities=14% Similarity=0.101 Sum_probs=43.5
Q ss_pred ceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccc-eEeecCcccccc
Q psy6353 81 ANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGK-YYSGLGGRERLR 135 (136)
Q Consensus 81 ~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~-~fv~f~~~e~~~ 135 (136)
..|||+|||..+|+++|+++|++||.|..|.+... .+. |||+|.+.++|.
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-----~Gf~aFVef~~~~~A~ 76 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-----NGIQAMVEFESVLCAQ 76 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-----SSEEEEEEESSHHHHH
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-----CCCEEEEEECCHHHHH
Confidence 34689999999999999999999999999999753 265 999999998764
No 362
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.09 E-value=2.6e-10 Score=67.14 Aligned_cols=51 Identities=29% Similarity=0.401 Sum_probs=44.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 78 IKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 78 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
...++|||+|+ .+|+++|+++|++||+|..|.+. ..++.|||+|.+.|+|.
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~-----~~~g~afV~f~~~~~a~ 63 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESAD 63 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE-----TTTTEEEEEESSHHHHH
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec-----CCCCEEEEEECCHHHHH
Confidence 46689999995 89999999999999999999985 24467999999998874
No 363
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.08 E-value=2.4e-11 Score=76.49 Aligned_cols=57 Identities=21% Similarity=0.430 Sum_probs=45.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhcCCCceEEE--------EEEeCCCCCCccceEeecCcccccc
Q psy6353 77 SIKGANLYVSGLPKHMSQQELESLFSPYGRIITS--------RILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 77 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~--------~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
....++|||+|||..+|+++|+++|++||.|..+ .+.. .+..++.|||+|.+.++|.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~--~g~~~g~afV~f~~~~~A~ 106 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMK--EGRMKGQAFIGLPNEKAAA 106 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEE--ETTTEEEEEEECSSHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEecc--CCCcccEEEEEeCCHHHHH
Confidence 3466899999999999999999999999998764 3332 2333467999999998874
No 364
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.07 E-value=1.7e-10 Score=67.19 Aligned_cols=47 Identities=17% Similarity=0.255 Sum_probs=40.1
Q ss_pred Cce-EEEcCCCCCCCHHH----HHHhhcCC-CceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 80 GAN-LYVSGLPKHMSQQE----LESLFSPY-GRIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 80 ~~~-l~v~nl~~~~t~~~----l~~~f~~~-G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
..+ |||+|||..+++++ |+++|++| |+|.++ ++ |.|||+|.+.|+|.
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg--G~AfV~F~~~esA~ 60 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG--CSAILRFINQDSAE 60 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT--TCEEEEESSHHHHH
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec--CEEEEEECCHHHHH
Confidence 444 99999999999988 55899999 599988 23 77999999999885
No 365
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.01 E-value=5e-10 Score=67.03 Aligned_cols=57 Identities=12% Similarity=0.043 Sum_probs=46.9
Q ss_pred CCceEEEcCCCC-----CCCHHHHHHhhcCCCceEEEEEEeCCCC-C-CccceEeecCcccccc
Q psy6353 79 KGANLYVSGLPK-----HMSQQELESLFSPYGRIITSRILCDNLA-T-ENGKYYSGLGGRERLR 135 (136)
Q Consensus 79 ~~~~l~v~nl~~-----~~t~~~l~~~f~~~G~v~~~~i~~~~~~-~-~~~~~fv~f~~~e~~~ 135 (136)
.+++|++.|+.. +-++++|++.|++||+|.++.|++++.+ + .+|.+||+|.+.|+|.
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~ 70 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAI 70 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHH
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHH
Confidence 568899999963 2378999999999999999999998754 3 3466999999999874
No 366
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.00 E-value=2.1e-10 Score=78.03 Aligned_cols=53 Identities=19% Similarity=0.259 Sum_probs=47.4
Q ss_pred CCCceEEEcCCCCCC---------CHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 78 IKGANLYVSGLPKHM---------SQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 78 ~~~~~l~v~nl~~~~---------t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
...++|||+|||..+ ++++|+++|++||+|.+|+++.+ +++|||+|.++++|.
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~-----kG~AFV~F~~~~~Ae 193 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES-----KNCGFVKFKYQANAE 193 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG-----GTEEEEEESSHHHHH
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC-----CCEEEEEeCCHHHHH
Confidence 467899999999998 79999999999999999999963 478999999998874
No 367
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=98.98 E-value=4.9e-10 Score=68.70 Aligned_cols=51 Identities=29% Similarity=0.401 Sum_probs=44.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 78 IKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 78 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
...++|||+|+ ++++++|+++|++||.|..|.+. ..+++|||+|.+.|+|.
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~-----~~kg~aFV~f~~~~~A~ 87 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESAD 87 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE-----TTTTEEEEECSSHHHHH
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe-----CCCCEEEEEECCHHHHH
Confidence 46789999995 69999999999999999999986 34477999999999874
No 368
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.97 E-value=1.6e-09 Score=66.12 Aligned_cols=65 Identities=12% Similarity=0.093 Sum_probs=55.4
Q ss_pred eeecCCChh-hh---HHHHhccCCCeeEEEEEccCCCceeeEEEEcCC-HHHHHHHHHHHc--CceeCCceEEEEe
Q psy6353 2 VYQTLLNKL-FT---YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHR-PEDAEKAINTLN--GLRLQNKTIKVSY 70 (136)
Q Consensus 2 v~v~nl~~~-~~---l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~-~~~a~~a~~~~~--~~~~~g~~l~v~~ 70 (136)
|||+||+.. ++ |+++|++||+|..|.+.+ +.. .|||.|.+ .++|..|+.++| +..|.|..+++..
T Consensus 21 l~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~--g~~--tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~ev 92 (121)
T 1owx_A 21 LKFSGDLDDQTCREDLHILFSNHGEIKWIDFVR--GAK--EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEV 92 (121)
T ss_dssp EEEEESCCSSCCHHHHHHHTCSSCCEEEEECCT--TCS--EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEE
T ss_pred EEEecCCCCcCCHHHHHHHHHhcCCEEEEEEec--CCC--EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEE
Confidence 789999999 76 999999999999999876 221 49999999 899999999885 6888888877754
No 369
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.96 E-value=9.3e-10 Score=63.86 Aligned_cols=53 Identities=11% Similarity=0.263 Sum_probs=47.9
Q ss_pred HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeC
Q psy6353 13 YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR 72 (136)
Q Consensus 13 l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~ 72 (136)
|.+.|++||.+..++++. .-+||+|.+.++|.+|++ |||..+.||.|+|..-.
T Consensus 41 L~~~F~~~G~Vilvr~v~------d~~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 41 LMQTLGSYGTIVLVRINQ------GQMLVTFADSHSALSVLD-VDGMKVKGRAVKISGPS 93 (95)
T ss_dssp HHHHHHHHSCCSEEEEET------TEEEEECSCSHHHHHHHH-GGGSEETTEEEEEECCC
T ss_pred HHHHHHHCCCEEEEEEec------CcEEEEEcChHHHHHHHh-cCCeeeCCeEEEEeccC
Confidence 899999999999999876 119999999999999999 99999999999998643
No 370
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.93 E-value=5.3e-10 Score=79.74 Aligned_cols=53 Identities=13% Similarity=0.134 Sum_probs=45.9
Q ss_pred CCCceEEEcC--CCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 78 IKGANLYVSG--LPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 78 ~~~~~l~v~n--l~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
.++.+|||+| |+..+|+++|+++|++||+|.++.+.+ .++++||+|.+.|+|+
T Consensus 16 ~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~-----~kgfaFV~f~~~~~A~ 70 (345)
T 3tht_A 16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----NKPYSFARYRTTEESK 70 (345)
T ss_dssp SCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT-----TCSEEEEEESSHHHHH
T ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----CCCEEEEEECCHHHHH
Confidence 4678999999 578899999999999999999987764 2478999999999875
No 371
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.91 E-value=1.5e-09 Score=66.30 Aligned_cols=53 Identities=19% Similarity=0.092 Sum_probs=47.2
Q ss_pred CCCCceEEEcCCCCC-CCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCc-cccc
Q psy6353 77 SIKGANLYVSGLPKH-MSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGG-RERL 134 (136)
Q Consensus 77 ~~~~~~l~v~nl~~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~-~e~~ 134 (136)
-..+..|+|+|++.. ++.++|+++|++||+|..|.+.++..+ |||+|.+ +++|
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~t-----gfVrf~~~~~~A 69 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKE-----GIILFKEKAKEA 69 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCSE-----EEEEESSCHHHH
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCE-----EEEEECCChHHH
Confidence 457889999999999 999999999999999999999988764 8999999 5554
No 372
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.80 E-value=7.8e-09 Score=62.35 Aligned_cols=55 Identities=15% Similarity=0.171 Sum_probs=44.0
Q ss_pred CCCceEEEcCCCCCC-----------CHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 78 IKGANLYVSGLPKHM-----------SQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 78 ~~~~~l~v~nl~~~~-----------t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
..+++|++.||.... ++++|+++|++||.|..|.| .+.. .++.+||+|.+.|+|.
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~~--~~G~afV~f~~~~~A~ 78 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDRH--PDGVASVSFRDPEEAD 78 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETTC--TTCEEEEECSCHHHHH
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecCC--CCEEEEEEECCHHHHH
Confidence 467899999994433 26899999999999999966 5543 5678999999999874
No 373
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.79 E-value=1.8e-08 Score=59.68 Aligned_cols=43 Identities=14% Similarity=0.196 Sum_probs=37.2
Q ss_pred CCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 89 PKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 89 ~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
+..+++++|+++|++||+|..|.++. ..+++|||+|.+.|+|.
T Consensus 26 ~~~~te~~L~~~F~~~G~V~~v~i~~----~~rGfaFVeF~~~~~A~ 68 (100)
T 2d9o_A 26 KGGYSKDVLLRLLQKYGEVLNLVLSS----KKPGTAVVEFATVKAAE 68 (100)
T ss_dssp CCSCCHHHHHHHHHTTSCEEEEEEES----SSSSEEEEEESCHHHHH
T ss_pred CCCCCHHHHHHHHHhcCCEEEEEEcc----CCCCEEEEEECCHHHHH
Confidence 36789999999999999999999983 44578999999998874
No 374
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=98.78 E-value=3e-09 Score=63.62 Aligned_cols=57 Identities=14% Similarity=0.167 Sum_probs=46.0
Q ss_pred CCceEEEcCC--CCCC--------CHHHHHHhhcCCCceEEEEEEeCCCCC---CccceEeecCcccccc
Q psy6353 79 KGANLYVSGL--PKHM--------SQQELESLFSPYGRIITSRILCDNLAT---ENGKYYSGLGGRERLR 135 (136)
Q Consensus 79 ~~~~l~v~nl--~~~~--------t~~~l~~~f~~~G~v~~~~i~~~~~~~---~~~~~fv~f~~~e~~~ 135 (136)
+++.|.+.|+ |..+ .+++|++.|++||+|.++.|+++..++ ..|.+||+|.+.|+|.
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~ 73 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQ 73 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHH
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHH
Confidence 5678899998 3333 347999999999999999999988653 3467999999999875
No 375
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=98.65 E-value=1.1e-09 Score=65.39 Aligned_cols=51 Identities=18% Similarity=0.266 Sum_probs=40.7
Q ss_pred EcCCCCCCCHHHHHHhh------------cCCCceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 85 VSGLPKHMSQQELESLF------------SPYGRIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 85 v~nl~~~~t~~~l~~~f------------~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
+.|||..+++++|++.| ++||+|.+|.++++..+..+|.+||+|.+.|+|.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~ 82 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAE 82 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHH
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHH
Confidence 45666677777776666 9999999999999887555677999999999875
No 376
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.63 E-value=2.1e-08 Score=61.10 Aligned_cols=57 Identities=9% Similarity=0.095 Sum_probs=45.4
Q ss_pred CCceEEEcCCCC--C---CCHHHHHHhhcCCCceEEEEEEeCCCC----CC-ccceEeecCcccccc
Q psy6353 79 KGANLYVSGLPK--H---MSQQELESLFSPYGRIITSRILCDNLA----TE-NGKYYSGLGGRERLR 135 (136)
Q Consensus 79 ~~~~l~v~nl~~--~---~t~~~l~~~f~~~G~v~~~~i~~~~~~----~~-~~~~fv~f~~~e~~~ 135 (136)
++++|++.|+-. + -.+++|++.|++||+|.++.|+++..+ +. .|.+||+|.+.|+|.
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~ 85 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETH 85 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHH
Confidence 467889998832 2 247899999999999999999998753 33 366999999999875
No 377
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.47 E-value=7.9e-07 Score=52.78 Aligned_cols=65 Identities=15% Similarity=0.136 Sum_probs=55.4
Q ss_pred eeecCCChhhh---HHHHhccC-----CCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEe
Q psy6353 2 VYQTLLNKLFT---YEKVHLGF-----SDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY 70 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~-----G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~ 70 (136)
+=+-|||+.++ ++.+.+++ |.+..+.+.. .. +=|+|+|.|...|-+|.-+++|.++.|++|+|..
T Consensus 24 iaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~p---DH-~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gT 96 (117)
T 2l9w_A 24 ICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVS---DF-NGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGT 96 (117)
T ss_dssp EEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEET---TT-TEEEEECSCHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred EEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEec---CC-CceEEEEccchhhHHHHhhcCCeeecCeEEEecC
Confidence 34568999888 89999999 9999998876 22 2399999999999999888999999999999963
No 378
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.26 E-value=3.8e-07 Score=55.17 Aligned_cols=54 Identities=9% Similarity=0.049 Sum_probs=41.9
Q ss_pred CCceEEEcCCCCCC----------CHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 79 KGANLYVSGLPKHM----------SQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 79 ~~~~l~v~nl~~~~----------t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
.++.|.+.|+=... .++||++.|++||.|.++.+.++. ..|.+||+|.+.|+|.
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~---~~G~~fV~f~~~e~A~ 69 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS---AQGNVYVKCPSIAAAI 69 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC---TTCCEEEECSSHHHHH
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC---CcEEEEEEECCHHHHH
Confidence 45678888873221 346899999999999999997764 3577999999999875
No 379
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.15 E-value=2.1e-05 Score=46.19 Aligned_cols=81 Identities=21% Similarity=0.187 Sum_probs=64.8
Q ss_pred eeecCCChhhh---HHHHhcc-----CCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCC
Q psy6353 2 VYQTLLNKLFT---YEKVHLG-----FSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARP 73 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~-----~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~ 73 (136)
|.|.|||.... |+-+|+. =|+|.++.... +-|+|+|.+...|++.+++ ..+.+++.+|.|....+
T Consensus 11 I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~------~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV~P~~~ 83 (104)
T 2dhx_A 11 VEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG------CGGVLTFREPADAERVLAQ-ADHELHGAQLSLRPAPP 83 (104)
T ss_dssp EEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET------TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEEEECCC
T ss_pred EEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC------CcEEEEEcChHHHHHHhcC-CcceecCeEEEEEcCCC
Confidence 56889998877 7778876 24777776542 4589999999999999884 36889999999987665
Q ss_pred CCCCCCCceEEEcCCCCCCC
Q psy6353 74 SSESIKGANLYVSGLPKHMS 93 (136)
Q Consensus 74 ~~~~~~~~~l~v~nl~~~~t 93 (136)
. ..+++.+++||+.++
T Consensus 84 ~----~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 84 R----APARLLLQGLPPGTS 99 (104)
T ss_dssp C----CCCCCCCCSCCCCCC
T ss_pred C----CcceEeeecCCCCCC
Confidence 5 568899999999875
No 380
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.08 E-value=1.7e-05 Score=46.71 Aligned_cols=69 Identities=16% Similarity=0.236 Sum_probs=57.2
Q ss_pred eeecCCChhh-------h-HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeCC
Q psy6353 2 VYQTLLNKLF-------T-YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARP 73 (136)
Q Consensus 2 v~v~nl~~~~-------~-l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~~ 73 (136)
|++.||+.++ + ++++|.+|+++......+ |-.-.-|.|.++++|.+|...||+..+.|+.++|.++++
T Consensus 8 Liitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lk----SFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~ 83 (104)
T 1wey_A 8 LIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFK----SFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQT 83 (104)
T ss_dssp EEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEET----TTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCC
T ss_pred EEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecC----cceEEEEEeCChHHHHHHHHHhccceecCceeEEEecCC
Confidence 5677887755 1 799999999998876665 323468999999999999999999999999999999875
Q ss_pred C
Q psy6353 74 S 74 (136)
Q Consensus 74 ~ 74 (136)
.
T Consensus 84 ~ 84 (104)
T 1wey_A 84 L 84 (104)
T ss_dssp S
T ss_pred C
Confidence 4
No 381
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.90 E-value=1.3e-05 Score=46.23 Aligned_cols=50 Identities=20% Similarity=0.296 Sum_probs=40.0
Q ss_pred CCCceEEEcCCC----CCCCH----HHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCccccc
Q psy6353 78 IKGANLYVSGLP----KHMSQ----QELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERL 134 (136)
Q Consensus 78 ~~~~~l~v~nl~----~~~t~----~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~ 134 (136)
.+..|+.|.-.| .++.+ .+|.+.|++||.|..++++.|. +||+|.+.|+|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~-------~fVtF~d~~sA 62 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK-------MWVTFLEGSSA 62 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS-------EEEEESSHHHH
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC-------EEEEECChHHH
Confidence 356788887766 23444 6789999999999999999865 79999998876
No 382
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=97.74 E-value=1.5e-05 Score=53.33 Aligned_cols=45 Identities=9% Similarity=0.029 Sum_probs=37.2
Q ss_pred CCCHHHHHHhhcCCCceEEEEEEeCCCC-----CCccceEeecCcccccc
Q psy6353 91 HMSQQELESLFSPYGRIITSRILCDNLA-----TENGKYYSGLGGRERLR 135 (136)
Q Consensus 91 ~~t~~~l~~~f~~~G~v~~~~i~~~~~~-----~~~~~~fv~f~~~e~~~ 135 (136)
.-.+++|++.|++||.|.++.++++..+ ...|.+||+|.+.|+|.
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~ 189 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETH 189 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHH
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHH
Confidence 3467899999999999999999977655 33466999999999875
No 383
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.68 E-value=0.00017 Score=41.57 Aligned_cols=54 Identities=11% Similarity=0.293 Sum_probs=43.0
Q ss_pred ceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCC-c--cceEeecCccccc
Q psy6353 81 ANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATE-N--GKYYSGLGGRERL 134 (136)
Q Consensus 81 ~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~-~--~~~fv~f~~~e~~ 134 (136)
.+|.|++||+.+|++++.+.++..+.+.....+..+.+.. . .-||+.|.+.|++
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v 58 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDI 58 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHH
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHH
Confidence 4789999999999999999999999887766665553322 2 2389999998875
No 384
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.55 E-value=3.5e-05 Score=44.62 Aligned_cols=52 Identities=17% Similarity=0.127 Sum_probs=42.1
Q ss_pred CCCCceEEEcCCCCC-----CCH----HHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 77 SIKGANLYVSGLPKH-----MSQ----QELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 77 ~~~~~~l~v~nl~~~-----~t~----~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
..+..|+.|.-++.. +.+ .+|.+.|.+||+|..+++..|. +||+|.+.|+|.
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~-------~fVtF~d~~sAl 72 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ-------MLVTFADSHSAL 72 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE-------EEEECSCSHHHH
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc-------EEEEEcChHHHH
Confidence 346789999987743 333 5688999999999999999876 899999998863
No 385
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.32 E-value=0.00035 Score=41.49 Aligned_cols=51 Identities=8% Similarity=-0.048 Sum_probs=46.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhcCC-----CceEEEEEEeCCCCCCccceEeecCccccc
Q psy6353 79 KGANLYVSGLPKHMSQQELESLFSPY-----GRIITSRILCDNLATENGKYYSGLGGRERL 134 (136)
Q Consensus 79 ~~~~l~v~nl~~~~t~~~l~~~f~~~-----G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~ 134 (136)
..+++-+-|||..+++..|+.+..++ |.+..+.+..|. +||.|+|.|...|
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH-----~GAivef~d~~~A 75 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF-----NGAIIIFRDSKFA 75 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT-----TEEEEECSCHHHH
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC-----CceEEEEccchhh
Confidence 57899999999999999999999999 999999999764 8899999998765
No 386
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.19 E-value=0.0019 Score=38.91 Aligned_cols=65 Identities=14% Similarity=0.066 Sum_probs=49.6
Q ss_pred eeecCCChhhh--HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCceeCC-ceEEEEee
Q psy6353 2 VYQTLLNKLFT--YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQN-KTIKVSYA 71 (136)
Q Consensus 2 v~v~nl~~~~~--l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g-~~l~v~~~ 71 (136)
|.|-..|.... +...|++||.|.+.... ....+-.|.|.++.+|++|+. .||..+.| -.|=|.+.
T Consensus 27 VtVFGFp~~~~~~VL~~F~~~G~Iv~~~~~----~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 27 VTVFGFPQASASYILLQFAQYGNILKHVMS----NTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPC 94 (119)
T ss_dssp EEEECCCGGGHHHHHHHHHTTSCEEEEEEC----SSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEEC
T ss_pred EEEECCCHHHHHHHHHHHHhhCcEEEeccC----CCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEEC
Confidence 45556666665 88999999999887752 234578899999999999999 59999985 44556553
No 387
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.04 E-value=0.00051 Score=39.95 Aligned_cols=56 Identities=13% Similarity=0.272 Sum_probs=40.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCC-Cc--cceEeecCccccc
Q psy6353 79 KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLAT-EN--GKYYSGLGGRERL 134 (136)
Q Consensus 79 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~-~~--~~~fv~f~~~e~~ 134 (136)
.+-+|.|+.||+.+|++++.+.+++.-++.....+....+. .. .-||+.|.+.|++
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv 66 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDI 66 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHH
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHH
Confidence 34679999999999999999999988765443333332222 22 2389999998875
No 388
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.81 E-value=0.0026 Score=36.93 Aligned_cols=49 Identities=20% Similarity=0.320 Sum_probs=38.0
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHH
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTL 56 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~ 56 (136)
||+-+.|.+.. |.++|+.||.+ .|.++.. -.|||.|.+++.|..|++.+
T Consensus 18 Vf~l~FP~ewKt~DI~~lFs~fggv-~I~WidD-----TsAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 18 VLHVTFPKEWKTSDLYQLFSAFGNI-QISWIDD-----TSAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp EEEEECCTTCCHHHHHHHHTTTCSC-CCEEEET-----TEEEEECSCHHHHHHHHHHH
T ss_pred EEEEeCChhhhhHHHHHHhhccCCE-EEEEEcC-----CeEEEEecCHHHHHHHHHhc
Confidence 34448888876 99999999965 4555541 24999999999999999866
No 389
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.74 E-value=0.0025 Score=37.09 Aligned_cols=46 Identities=24% Similarity=0.398 Sum_probs=36.8
Q ss_pred EEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 83 LYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 83 l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
++.-+.|+.+...||.++|++|| -..|+.+-| .-|||.|.+++.++
T Consensus 8 V~~l~FP~ewKt~Di~~lFs~fg-gv~I~WidD------TsAlvvf~~~~~a~ 53 (101)
T 3ctr_A 8 VLHVTFPKEWKTSDLYQLFSAFG-NIQISWIDD------TSAFVSLSQPEQVK 53 (101)
T ss_dssp EEEEECCTTCCHHHHHHHTTTSE-EEEEEEEET------TEEEEEEEEECHHH
T ss_pred EEEEeCChhhhhHHHHHHHhccC-CEEEEEEcC------CeEEEEecCHHHHH
Confidence 44449999999999999999999 456777754 45799999888764
No 390
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.71 E-value=0.0036 Score=36.34 Aligned_cols=47 Identities=28% Similarity=0.427 Sum_probs=37.5
Q ss_pred ceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 81 ANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 81 ~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
..+++ +.|+.+...||.++|++||. ..|+.+-| .-|||.|.+++.++
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fgg-v~I~WidD------TsAlvvf~~~~~a~ 63 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDD------TSAFVSLSQPEQVQ 63 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCS-CCCEEEET------TEEEEECSCHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCC-EEEEEEcC------CeEEEEecCHHHHH
Confidence 44555 99999999999999999994 45666654 45799999988764
No 391
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.57 E-value=0.0063 Score=37.26 Aligned_cols=70 Identities=13% Similarity=0.039 Sum_probs=49.9
Q ss_pred eeecCCChhhh--HHHHhccCCCeeEE-EEEc--------------cCC-CceeeEEEEcCCHHHHHHHHHHHcCceeCC
Q psy6353 2 VYQTLLNKLFT--YEKVHLGFSDAEIC-VFLI--------------STA-QSLGYGFVNYHRPEDAEKAINTLNGLRLQN 63 (136)
Q Consensus 2 v~v~nl~~~~~--l~~~f~~~G~v~~~-~~~~--------------~~~-~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g 63 (136)
|.|=..|...+ +-+.|++||.|.+- ...+ ... ....+--|+|.++.+|++|+. .||..+.|
T Consensus 10 VtVFGFp~~~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ii~G 88 (132)
T 3p3d_A 10 ILVFGYPETMANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAVFNG 88 (132)
T ss_dssp EEEECCCGGGHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCEETT
T ss_pred EEEEecCHHHHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeEeCc
Confidence 44555677766 88999999998662 1110 000 134567899999999999999 58999999
Q ss_pred ceEEEEeeC
Q psy6353 64 KTIKVSYAR 72 (136)
Q Consensus 64 ~~l~v~~~~ 72 (136)
..|=|.+..
T Consensus 89 ~mIGV~Py~ 97 (132)
T 3p3d_A 89 VLLGVIPYT 97 (132)
T ss_dssp EECEEEECC
T ss_pred EEEEEEECC
Confidence 877776654
No 392
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.55 E-value=0.0035 Score=36.07 Aligned_cols=62 Identities=13% Similarity=0.166 Sum_probs=45.2
Q ss_pred eeecCCChhhhHHHHhccCCCeeEEEEEc-cC------CCceeeEEEEcCCHHHHHHHHHHHcCceeCC
Q psy6353 2 VYQTLLNKLFTYEKVHLGFSDAEICVFLI-ST------AQSLGYGFVNYHRPEDAEKAINTLNGLRLQN 63 (136)
Q Consensus 2 v~v~nl~~~~~l~~~f~~~G~v~~~~~~~-~~------~~~kg~~fv~f~~~~~a~~a~~~~~~~~~~g 63 (136)
|.|.+||..+|.++++++.++.-++.+.. .. ...-+-|+|.|.+.+++....+.++|+.+.+
T Consensus 4 vVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 4 VVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp EEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred EEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 56889999999777766666554443333 11 1234679999999999999999999987753
No 393
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.39 E-value=0.0065 Score=35.63 Aligned_cols=50 Identities=18% Similarity=0.189 Sum_probs=40.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhcC-----CCceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 79 KGANLYVSGLPKHMSQQELESLFSP-----YGRIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 79 ~~~~l~v~nl~~~~t~~~l~~~f~~-----~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
...+|.|.|||+.++++.|.-.|+. -|+|..+.... ..|.|+|.+.+.+.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-------~~AvItF~d~~va~ 61 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG-------CGGVLTFREPADAE 61 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET-------TEEEEEESSHHHHH
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC-------CcEEEEEcChHHHH
Confidence 5678999999999999999999986 25777776643 56799999987764
No 394
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.35 E-value=0.0079 Score=34.92 Aligned_cols=61 Identities=15% Similarity=0.178 Sum_probs=49.0
Q ss_pred eeecCCChhhhHHHHhccCCCeeEEEEEc-cCCC------ceeeEEEEcCCHHHHHHHHHHHcCceeC
Q psy6353 2 VYQTLLNKLFTYEKVHLGFSDAEICVFLI-STAQ------SLGYGFVNYHRPEDAEKAINTLNGLRLQ 62 (136)
Q Consensus 2 v~v~nl~~~~~l~~~f~~~G~v~~~~~~~-~~~~------~kg~~fv~f~~~~~a~~a~~~~~~~~~~ 62 (136)
|.|..||..+|.++++++.+++....... ..|+ .-+.|+|.|.+.++.....+..+|..+.
T Consensus 12 vVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 12 VVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp EEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred EEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 67899999999999999999876665554 2222 2356899999999999999999997764
No 395
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=95.77 E-value=0.0078 Score=35.03 Aligned_cols=49 Identities=18% Similarity=0.299 Sum_probs=37.7
Q ss_pred eecCCChhhh---HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHc
Q psy6353 3 YQTLLNKLFT---YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLN 57 (136)
Q Consensus 3 ~v~nl~~~~~---l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~ 57 (136)
|.-+.|.+.. |.++|+.||.+ .|.++.. ..|||.|.+++.|..|++.+.
T Consensus 9 ~~l~FP~ewKt~Di~~lFs~fggv-~I~WidD-----TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 9 LHVTFPKEWKTSDLYQLFSAFGNI-QISWIDD-----TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEECCTTCCHHHHHHHTTTSEEE-EEEEEET-----TEEEEEEEEECHHHHHHHHHT
T ss_pred EEEeCChhhhhHHHHHHHhccCCE-EEEEEcC-----CeEEEEecCHHHHHHHHHhcc
Confidence 4448888876 99999999943 5555531 249999999999999998764
No 396
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.67 E-value=0.0074 Score=44.68 Aligned_cols=51 Identities=12% Similarity=0.144 Sum_probs=37.0
Q ss_pred CceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 80 GANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 80 ~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
.+.|+|. .|...++.+|.+.|++||+|.++..-.+. | -.+-|+|.++|++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g--~~~~vef~~~~~~~ 103 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF--G--LYAVVEFCQKESIG 103 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS--S--EEEEEECC---CCH
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC--C--eEEEEEeCCHHHHH
Confidence 4789998 79999999999999999999988777532 2 45899999998863
No 397
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=94.99 E-value=0.014 Score=43.19 Aligned_cols=49 Identities=18% Similarity=0.130 Sum_probs=34.1
Q ss_pred eeecCCChhhh---HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHH
Q psy6353 2 VYQTLLNKLFT---YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAIN 54 (136)
Q Consensus 2 v~v~nl~~~~~---l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~ 54 (136)
|+|. .|..++ |.++|++||+|.++..-... .-|+.|+|.+.++++.++.
T Consensus 56 v~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~---g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 56 VLIH-CPEKISENKFLKYLSQFGPINNHFFYESF---GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp EEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS---SEEEEEECC---CCHHHHS
T ss_pred EEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC---CeEEEEEeCCHHHHHHHHh
Confidence 4565 455555 99999999999998776522 2699999999999987765
No 398
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=90.29 E-value=0.32 Score=28.46 Aligned_cols=51 Identities=16% Similarity=0.153 Sum_probs=38.4
Q ss_pred CCceEEEcCCCCCC-C----HHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCccccc
Q psy6353 79 KGANLYVSGLPKHM-S----QQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERL 134 (136)
Q Consensus 79 ~~~~l~v~nl~~~~-t----~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~ 134 (136)
-.++|.|.||+..+ . .+.++++|..|+++......+. .+-.-|.|.+.|+|
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS-----FRRirv~F~~~~~A 59 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS-----FKRVRINFSNPLSA 59 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT-----TTEEEEECSSTTHH
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc-----ceEEEEEeCChHHH
Confidence 35789999998765 2 2578999999999888777653 34557888888776
No 399
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=88.93 E-value=0.56 Score=28.14 Aligned_cols=52 Identities=17% Similarity=0.234 Sum_probs=39.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCccccccC
Q psy6353 79 KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLRR 136 (136)
Q Consensus 79 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~~ 136 (136)
...-|.|-+.|+.. ...+-..|++||.|...... .+ ..-..+.|.++.+|+|
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~----~~-~NWihI~Y~s~~~A~r 74 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS----NT-GNWMHIRYQSKLQARK 74 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC----SS-SSEEEEEESSHHHHHH
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC----CC-CCeEEEEeCCHHHHHH
Confidence 46779999999984 67778889999999987751 11 1336899998887754
No 400
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=86.18 E-value=1.3 Score=33.29 Aligned_cols=48 Identities=27% Similarity=0.436 Sum_probs=36.1
Q ss_pred CceEEEcCCCCCCCHHHHHHhhcCCCceEEEEEEeCCCCCCccceEeecCcccccc
Q psy6353 80 GANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLR 135 (136)
Q Consensus 80 ~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~fv~f~~~e~~~ 135 (136)
...++++ .|+.+...+|.+.|+.||. ..++++-+ ..+||.|.+.|.++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widd------t~a~V~~~~~~~a~ 487 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDD------TSAFVSLSQPEQVQ 487 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSS------SEEEEECSCHHHHH
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcC------CeEEEEECCHHHHH
Confidence 3445555 9999999999999999995 45555533 45899999888764
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=71.22 E-value=9.2 Score=28.66 Aligned_cols=45 Identities=20% Similarity=0.297 Sum_probs=34.4
Q ss_pred CChhhh---HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHc
Q psy6353 7 LNKLFT---YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLN 57 (136)
Q Consensus 7 l~~~~~---l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~ 57 (136)
+|..+. |.++|+.||.+ +|.++. ...|||.|.+.+.|..+++.++
T Consensus 447 f~~~~~~~~i~~~fs~fg~v-~V~wid-----dt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 447 FPKEWKTSDLYQLFSAFGNI-QISWID-----DTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp CCTTCCHHHHHHHGGGGCCC-EEEECS-----SSEEEEECSCHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHhcCCE-EEEEEc-----CCeEEEEECCHHHHHHHHHHHH
Confidence 555444 89999999964 555543 2349999999999999999884
No 402
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=59.19 E-value=6.3 Score=21.02 Aligned_cols=35 Identities=14% Similarity=0.287 Sum_probs=24.5
Q ss_pred eeEEEEcCCHHHHHHHHHHHcCceeCCceEEEEeeC
Q psy6353 37 GYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR 72 (136)
Q Consensus 37 g~~fv~f~~~~~a~~a~~~~~~~~~~g~~l~v~~~~ 72 (136)
.|.||+-.. +.++.+++.+++..+.|+++.+..+.
T Consensus 41 ~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 41 NASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp SCEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred CcEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 468888766 45777888899999999998887653
No 403
>2gu3_A YPMB protein; APC1927, structural genomics, PSI, protein structure initiat midwest center for structural genomics, MCSG, unknown funct; 1.74A {Bacillus subtilis subsp} SCOP: d.17.1.6 d.17.1.6
Probab=57.83 E-value=17 Score=22.06 Aligned_cols=51 Identities=6% Similarity=0.023 Sum_probs=37.5
Q ss_pred EcCCCCCCCHHHHHHhhc-CCC--ceEEEEEEeCCC-----------CCCccceEeecCcccccc
Q psy6353 85 VSGLPKHMSQQELESLFS-PYG--RIITSRILCDNL-----------ATENGKYYSGLGGRERLR 135 (136)
Q Consensus 85 v~nl~~~~t~~~l~~~f~-~~G--~v~~~~i~~~~~-----------~~~~~~~fv~f~~~e~~~ 135 (136)
+......++++++++.+. .++ +|.++.+..... .+....+|+.|.+.+.++
T Consensus 68 v~~~~~GiSe~~a~~~v~~~~~~~~I~~v~lG~~~~~pVWEV~Y~~~~~~~~Y~~~~F~~G~~ik 132 (136)
T 2gu3_A 68 SKEAKEGISEDKAAKIIKDEGLVSKQKEVHLAREGNVLLWEVTYLDKEGQYSLSYVDFTTGKILK 132 (136)
T ss_dssp EEEGGGSCCHHHHHHHHHHTTCCSEEEEEEEEEETTEEEEEEEEECTTSCEEEEEEETTTCCEEE
T ss_pred EEEHhhCCCHHHHHHHHHHhCCccceeEEeeeeECCEEEEEEEEEccCCcEEEEEEEeeCCeEee
Confidence 666788899999999984 554 567776665542 555577899999987664
No 404
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=57.19 E-value=24 Score=22.51 Aligned_cols=47 Identities=11% Similarity=0.035 Sum_probs=32.4
Q ss_pred CeeecCCChhh------------hHHHHh--ccCCCeeEEEEEccCCCceeeEEEEcCCHHH
Q psy6353 1 MVYQTLLNKLF------------TYEKVH--LGFSDAEICVFLISTAQSLGYGFVNYHRPED 48 (136)
Q Consensus 1 ~v~v~nl~~~~------------~l~~~f--~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~ 48 (136)
|+-+.|+|..- .|++.| +.|.++. +........+.|++.|.|.+.-.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~Gh~g~aIv~F~~dw~ 74 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYLGHSGTAIVEFNKDWN 74 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSSBEEEEEEEECCSSHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCCCCceeEEEEecCChH
Confidence 66778888621 278866 9999974 54444333478999999977543
No 405
>2qyc_A Ferredoxin-like protein; stress responsive A/B barrel domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 1.90A {Bordetella bronchiseptica RB50}
Probab=47.00 E-value=30 Score=19.48 Aligned_cols=49 Identities=4% Similarity=-0.082 Sum_probs=31.8
Q ss_pred CCCCCCCHHHHHHhh-------cCCCceEEEEEEeCCCCCCc---cceEeecCcccccc
Q psy6353 87 GLPKHMSQQELESLF-------SPYGRIITSRILCDNLATEN---GKYYSGLGGRERLR 135 (136)
Q Consensus 87 nl~~~~t~~~l~~~f-------~~~G~v~~~~i~~~~~~~~~---~~~fv~f~~~e~~~ 135 (136)
.+.+.++++++.++. .+...|.++.+.++...... -+.+++|+|.|+++
T Consensus 12 k~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~F~s~e~l~ 70 (103)
T 2qyc_A 12 EFDDGIDAGFFRTVDEYVARMKRECDGLLLYHFGENVAARSQGYTHATSSAFVDAAAHD 70 (103)
T ss_dssp EECTTCCHHHHHHHHHHHHHHHHHSTTEEEEEEEECCCTTCTTCCEEEEEEESSHHHHH
T ss_pred EECCCCCHHHHHHHHHHHHHhhhcCCCeEEEEECCCCCCCCCCccEEEEEEECCHHHHH
Confidence 466677766554433 34567888888887653222 23689999998864
No 406
>3bgu_A Ferredoxin-like protein of unknown function; ferredoxin-like fold, stress responsive A/B barrel domain, S genomics; 1.50A {Thermobifida fusca}
Probab=44.17 E-value=31 Score=20.08 Aligned_cols=53 Identities=9% Similarity=0.105 Sum_probs=33.9
Q ss_pred EEEcCCCCCCCHHHHHHhh-------cCCCceEEEEEEeCCCCCCc---cceEeecCcccccc
Q psy6353 83 LYVSGLPKHMSQQELESLF-------SPYGRIITSRILCDNLATEN---GKYYSGLGGRERLR 135 (136)
Q Consensus 83 l~v~nl~~~~t~~~l~~~f-------~~~G~v~~~~i~~~~~~~~~---~~~fv~f~~~e~~~ 135 (136)
+.+-.+.+.++++++.++. .+...|.++.+.++...... -+.+++|+|.|++.
T Consensus 25 IVlfklK~~~s~e~~~~~~~~l~~L~~~ip~i~~~~~G~~~s~~~~g~d~~l~~~F~s~edl~ 87 (116)
T 3bgu_A 25 IALFRWNDTVTPDQVEQVITALSKLPAAIPELKNYAFGADLGLAAGNYDFAVVADLDGEDGFR 87 (116)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHHCCCCCTTEEEEEEEECCSCSTTCCSEEEEEEEEHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHhhcCCceEEEEEccCCCCCCCCeeEEEEEEECCHHHHH
Confidence 3344477777777654443 34567888888887653222 23689999998764
No 407
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=43.13 E-value=32 Score=19.20 Aligned_cols=33 Identities=18% Similarity=0.125 Sum_probs=24.8
Q ss_pred eeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcC
Q psy6353 23 AEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNG 58 (136)
Q Consensus 23 v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~ 58 (136)
+.++.++. ..+||-||++...++...++....|
T Consensus 40 i~~v~vP~---~fPGYVfVe~~~~~~~~~~I~~t~g 72 (92)
T 3lpe_A 40 VYSILASE---SLKGYVLVEAETKGDVEELIKGMPR 72 (92)
T ss_dssp EEEEEECT---TSTTEEEEEESSHHHHHHHHTTCTT
T ss_pred EEEEEEec---ccCCEEEEEEecchhHHHHHHCCCC
Confidence 55565543 4789999999999888878775554
No 408
>1q4r_A Protein AT3G17210; center for eukaryotic structural genom structural genomics, protein structure initiative, CESG, UN function; 1.90A {Arabidopsis thaliana} SCOP: d.58.4.4 PDB: 1q53_A 2q3p_A
Probab=42.18 E-value=27 Score=20.08 Aligned_cols=53 Identities=11% Similarity=0.103 Sum_probs=33.4
Q ss_pred EEEcCCCCCCCHHHHHHhh-------cCCCceEEEEEEeCCCC-C----CccceEeecCcccccc
Q psy6353 83 LYVSGLPKHMSQQELESLF-------SPYGRIITSRILCDNLA-T----ENGKYYSGLGGRERLR 135 (136)
Q Consensus 83 l~v~nl~~~~t~~~l~~~f-------~~~G~v~~~~i~~~~~~-~----~~~~~fv~f~~~e~~~ 135 (136)
+.+-.+.+.++++++.++. .....|.++.+.++... + -.-+.+++|+|.|+++
T Consensus 14 iVlfklk~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~d~~l~~~F~s~e~l~ 78 (112)
T 1q4r_A 14 VLLASFKDGVSPEKIEELIKGYANLVNLIEPMKAFHWGKDVSIENLHQGYTHIFESTFESKEAVA 78 (112)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHTHHHHCTTCCEEEEEECCCSSSCSTTCCEEEEEEESCHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHhhhCCceEEEEEccCCCccccCCCccEEEEEEECCHHHHH
Confidence 3344467777777654433 34566888888877543 2 2233689999999864
No 409
>1tr0_A Stable protein 1; plant protein; 1.80A {Populus tremula} SCOP: d.58.4.4 PDB: 1si9_A
Probab=39.78 E-value=44 Score=18.92 Aligned_cols=53 Identities=8% Similarity=0.104 Sum_probs=33.6
Q ss_pred EEEcCCCCCCCHHHHHHhh-------cCCCceEEEEEEeCCCC---CCc----cceEeecCcccccc
Q psy6353 83 LYVSGLPKHMSQQELESLF-------SPYGRIITSRILCDNLA---TEN----GKYYSGLGGRERLR 135 (136)
Q Consensus 83 l~v~nl~~~~t~~~l~~~f-------~~~G~v~~~~i~~~~~~---~~~----~~~fv~f~~~e~~~ 135 (136)
+.+-.+.+.++++++.++. .....|.++.+.++... +.. -+.+++|+|.|+++
T Consensus 12 iVlfklk~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~d~~l~~~F~s~e~l~ 78 (108)
T 1tr0_A 12 TLLTRFKDEITREQIDNYINDYTNLLDLIPSMKSFNWGTDLGMESAELNRGYTHAFESTFESKSGLQ 78 (108)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHHHHHHCTTCCEEEEEECCSCSCTTTTTTCCEEEEEEESSHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHhhcCCceEEEEEccCCCccccccCCCccEEEEEEECCHHHHH
Confidence 4444477777777654433 34567888888777542 222 33689999998764
No 410
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=39.02 E-value=32 Score=19.90 Aligned_cols=34 Identities=18% Similarity=0.227 Sum_probs=25.9
Q ss_pred CeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcC
Q psy6353 22 DAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNG 58 (136)
Q Consensus 22 ~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~ 58 (136)
.|.++..+. .-+||-||+=.+..++..|++.+.+
T Consensus 40 ~I~Si~~~~---~lkGyIyVEA~~~~~V~~ai~gi~~ 73 (106)
T 3h7h_B 40 QIKSVVAPE---HVKGYIYVEAYKQTHVKQAIEGVGN 73 (106)
T ss_dssp CCCEEEECT---TCCSEEEEEESSHHHHHHHHTTCGG
T ss_pred ceEEEEecC---CCceEEEEEeCCHHHHHHHHhcccc
Confidence 356665543 5799999999999999999875543
No 411
>3bb5_A Stress responsive alpha-beta protein; dimeric ferredoxin-like protein, structural genomics, joint for structural genomics, JCSG; HET: CIT; 2.30A {Jannaschia SP}
Probab=37.58 E-value=62 Score=18.92 Aligned_cols=54 Identities=6% Similarity=-0.057 Sum_probs=35.0
Q ss_pred eEEEcCCCCCCCHHHHHHh-------hcCCCceEEEEEEeCCCC-CC-c---cceEeecCcccccc
Q psy6353 82 NLYVSGLPKHMSQQELESL-------FSPYGRIITSRILCDNLA-TE-N---GKYYSGLGGRERLR 135 (136)
Q Consensus 82 ~l~v~nl~~~~t~~~l~~~-------f~~~G~v~~~~i~~~~~~-~~-~---~~~fv~f~~~e~~~ 135 (136)
.+.+-.+.+.++++++.++ -.+...|.++.+.++... +. . -+.+++|+|.|++.
T Consensus 23 HIVlfklK~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~s~e~~~~g~~~~l~~~F~s~e~l~ 88 (121)
T 3bb5_A 23 HLVMLEPEGEGAMDRIMEAMAILDGLAPELPGLTEFRHGPNRDFEQKSERYPYGFLCTFTDKAALD 88 (121)
T ss_dssp EEEEECBCSTTHHHHHHHHHHHHHHHGGGCTTEEEEEEEEBCCTTSSCTTCCEEEEEEESSHHHHH
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHhcCCCeEEEEECCCCCccccCCCeeEEEEEEECCHHHHH
Confidence 4445567788777654433 345677888888887642 22 1 22689999998764
No 412
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=36.76 E-value=39 Score=18.81 Aligned_cols=50 Identities=10% Similarity=0.106 Sum_probs=34.2
Q ss_pred EEEcCCCCCCCHHHHHHhhcC-CC-ceEEEEEEeCCCCCCccceEeecCccccc
Q psy6353 83 LYVSGLPKHMSQQELESLFSP-YG-RIITSRILCDNLATENGKYYSGLGGRERL 134 (136)
Q Consensus 83 l~v~nl~~~~t~~~l~~~f~~-~G-~v~~~~i~~~~~~~~~~~~fv~f~~~e~~ 134 (136)
-|+-.++..++..++++.+.. || +|..++.+..+. .-+.|||.+....++
T Consensus 25 ~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~--~~KKA~V~L~~~~~a 76 (86)
T 3j21_T 25 KLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPR--GEKKAYVKLKPEYSA 76 (86)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTT--SCEEEEEEECTTSCH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCC--CceEEEEEcCCCCcH
Confidence 444456889999999987765 45 566777665542 235699999876543
No 413
>3bde_A MLL5499 protein; stress responsive A/B barrel domain, structural genomics, JO center for structural genomics, JCSG; 1.79A {Mesorhizobium loti}
Probab=35.15 E-value=63 Score=18.93 Aligned_cols=50 Identities=8% Similarity=-0.022 Sum_probs=31.6
Q ss_pred cCCCCCCCHHHHHH-------hhcCCCceEEEEEEeCCCCCCc--cceEeecCcccccc
Q psy6353 86 SGLPKHMSQQELES-------LFSPYGRIITSRILCDNLATEN--GKYYSGLGGRERLR 135 (136)
Q Consensus 86 ~nl~~~~t~~~l~~-------~f~~~G~v~~~~i~~~~~~~~~--~~~fv~f~~~e~~~ 135 (136)
-.+.+.++++++.+ +-.+...|.++.+.++...... -+.+++|+|.|+++
T Consensus 27 fklK~~~~~e~~~~~~~~l~~L~~~Ip~I~~~~vG~~~~~~~~~d~~l~~~F~s~edl~ 85 (120)
T 3bde_A 27 FTLKHASHSLEEKRFLVDAKKILSAIRGVTHFEQLRQISPKIDYHFGFSMEFADQAAYT 85 (120)
T ss_dssp EEESSCTTCHHHHHHHHHHHHHHHTSTTCEEEEEEECCCSSSCCCEEEEEEESSHHHHH
T ss_pred EEECCCCCHHHHHHHHHHHHHhhccCCceEEEEEccCCCCCCCccEEEEEEECCHHHHH
Confidence 33556655554433 3355677888888887654222 22689999998764
No 414
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=34.03 E-value=63 Score=18.00 Aligned_cols=24 Identities=0% Similarity=-0.119 Sum_probs=19.2
Q ss_pred CeeEEEEEc--cCCCceeeEEEEcCC
Q psy6353 22 DAEICVFLI--STAQSLGYGFVNYHR 45 (136)
Q Consensus 22 ~v~~~~~~~--~~~~~kg~~fv~f~~ 45 (136)
.|+++++-. ..|+-+|+|-|+|.+
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 467787777 567889999999974
No 415
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=32.19 E-value=27 Score=19.19 Aligned_cols=19 Identities=16% Similarity=0.441 Sum_probs=15.8
Q ss_pred EcCCCCCC-CHHHHHHhhcC
Q psy6353 85 VSGLPKHM-SQQELESLFSP 103 (136)
Q Consensus 85 v~nl~~~~-t~~~l~~~f~~ 103 (136)
|-|||+++ |+.++.+++.+
T Consensus 29 IPnLPpgVnTW~qI~el~qk 48 (81)
T 2ko4_A 29 IPNIPPNINTWQQVTALAQQ 48 (81)
T ss_dssp SSSCCTTTCBHHHHHHHHTT
T ss_pred CCCCCCCcchHHHHHHHHHc
Confidence 56889887 99999998875
No 416
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=31.01 E-value=77 Score=18.18 Aligned_cols=24 Identities=0% Similarity=-0.049 Sum_probs=19.1
Q ss_pred CeeEEEEEc--cCCCceeeEEEEcCC
Q psy6353 22 DAEICVFLI--STAQSLGYGFVNYHR 45 (136)
Q Consensus 22 ~v~~~~~~~--~~~~~kg~~fv~f~~ 45 (136)
.|+++++.+ ..|+-+|+|-|+|.+
T Consensus 5 ~ITdVri~~i~~~gklkA~aSVt~dd 30 (100)
T 2ia9_A 5 EVTDVRLRRVNTDGRMRAIASITLDH 30 (100)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 467787777 567889999999974
No 417
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=30.92 E-value=54 Score=18.50 Aligned_cols=20 Identities=20% Similarity=0.536 Sum_probs=17.9
Q ss_pred eeEEEEcCCHHHHHHHHHHH
Q psy6353 37 GYGFVNYHRPEDAEKAINTL 56 (136)
Q Consensus 37 g~~fv~f~~~~~a~~a~~~~ 56 (136)
|.|.+.|.+.++-..|+.++
T Consensus 47 gqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 47 GQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp SCEEEEESSHHHHHHHHHHH
T ss_pred CeeEEEecCChHHHHHHHHH
Confidence 56999999999999999876
No 418
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=30.10 E-value=82 Score=18.07 Aligned_cols=22 Identities=18% Similarity=0.377 Sum_probs=15.4
Q ss_pred cCCCceeeEEEEcCCHHHHHHHH
Q psy6353 31 STAQSLGYGFVNYHRPEDAEKAI 53 (136)
Q Consensus 31 ~~~~~kg~~fv~f~~~~~a~~a~ 53 (136)
-.|++.|||.| |.|.+.|...=
T Consensus 60 G~gkstG~a~I-Yds~e~akk~E 81 (101)
T 1xn9_A 60 GMQESKGYAKL-YEDADRMKQVE 81 (101)
T ss_dssp SSSEEEEEEEE-CSCHHHHHHHH
T ss_pred CCceEEEEEEE-ECCHHHHHhhC
Confidence 45778888865 77777766553
No 419
>2i9z_A Putative septation protein spovg; APC86317, staphylococcus epidermidis ATCC 12228, STRU genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=29.27 E-value=87 Score=18.14 Aligned_cols=24 Identities=0% Similarity=-0.119 Sum_probs=19.0
Q ss_pred CeeEEEEEc--cCCCceeeEEEEcCC
Q psy6353 22 DAEICVFLI--STAQSLGYGFVNYHR 45 (136)
Q Consensus 22 ~v~~~~~~~--~~~~~kg~~fv~f~~ 45 (136)
.|+++++.+ ..|+-+|+|-|+|.+
T Consensus 5 ~iTdVri~~i~~~gklkA~aSVt~dd 30 (105)
T 2i9z_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (105)
T ss_dssp CEEEEEEEECCSCSSEEEEEEEEETT
T ss_pred EEEEEEEEEeCCCCCEEEEEEEEECC
Confidence 466777777 567889999999974
No 420
>3ulj_A LIN28B, DNA-binding protein; beta barrel, cold shock domain fold, nucleic acid binding, D binding protein; 1.06A {Silurana} PDB: 4a4i_A
Probab=29.15 E-value=33 Score=19.25 Aligned_cols=10 Identities=30% Similarity=1.006 Sum_probs=8.0
Q ss_pred CceeeEEEEc
Q psy6353 34 QSLGYGFVNY 43 (136)
Q Consensus 34 ~~kg~~fv~f 43 (136)
..|||+||+-
T Consensus 18 ~~KGfGFI~~ 27 (90)
T 3ulj_A 18 VRMGFGFISM 27 (90)
T ss_dssp TTTTEEEEEE
T ss_pred CCCCeEEeEe
Confidence 4689999974
No 421
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=28.44 E-value=21 Score=19.15 Aligned_cols=12 Identities=25% Similarity=0.750 Sum_probs=9.4
Q ss_pred CceeeEEEEcCC
Q psy6353 34 QSLGYGFVNYHR 45 (136)
Q Consensus 34 ~~kg~~fv~f~~ 45 (136)
..||||||+=.+
T Consensus 12 ~~KGfGFI~~~d 23 (74)
T 2k5n_A 12 KDKGFGFIKDEN 23 (74)
T ss_dssp TTTTEEEEEESS
T ss_pred CCCCeEEEecCC
Confidence 468999998765
No 422
>3fmb_A Dimeric protein of unknown function and ferredoxi fold; YP_212648.1, stress responsive A/B barrel domain; HET: MSE; 1.85A {Bacteroides fragilis}
Probab=28.10 E-value=93 Score=18.08 Aligned_cols=53 Identities=15% Similarity=0.128 Sum_probs=31.7
Q ss_pred EEEcCCCCCCCHHH-----------HHHhhcCCCceEEEEEEeCCCCC--CccceEeecCcccccc
Q psy6353 83 LYVSGLPKHMSQQE-----------LESLFSPYGRIITSRILCDNLAT--ENGKYYSGLGGRERLR 135 (136)
Q Consensus 83 l~v~nl~~~~t~~~-----------l~~~f~~~G~v~~~~i~~~~~~~--~~~~~fv~f~~~e~~~ 135 (136)
+.+-.+.+.+++++ +..+-.+...|.++.+.++.... -.-+.+++|+|.|++.
T Consensus 24 IVlfklK~~~~~~~~~~~~~~~~~~l~~L~~~IP~i~~~~vG~~~s~~~~yd~~l~~~F~s~e~l~ 89 (118)
T 3fmb_A 24 IVLFKLRDDVPVEEKLVVMNSFKEAIEALPAKISVIRKIEVGLNMNPGETWNIALYSEFDNLDDVK 89 (118)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHHHTGGGTCTTCSEEEEEECCCTTCCCCEEEEEEESSHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHhhccCCCeEEEEEeccCCCCCCceEEEEEEECCHHHHH
Confidence 33344666666553 22333456678888888875321 1122689999998764
No 423
>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomi 2, protein structure initiative; NMR {Shewanella oneidensis}
Probab=27.13 E-value=21 Score=19.16 Aligned_cols=12 Identities=25% Similarity=0.528 Sum_probs=9.4
Q ss_pred CceeeEEEEcCC
Q psy6353 34 QSLGYGFVNYHR 45 (136)
Q Consensus 34 ~~kg~~fv~f~~ 45 (136)
..||||||+=.+
T Consensus 10 ~~KGfGFI~~~d 21 (74)
T 2kcm_A 10 AAKKYGFIQGDD 21 (74)
T ss_dssp TTTTEEEEEETT
T ss_pred CCCCEEEEecCC
Confidence 468999998765
No 424
>1rjj_A Expressed protein; beta barrel, homodimer, structural genomics, protein structure initiative, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: d.58.4.4
Probab=27.02 E-value=54 Score=18.68 Aligned_cols=38 Identities=11% Similarity=0.030 Sum_probs=24.0
Q ss_pred HHhhcCCCceEEEEEEeCC-CC-CCc----cceEeecCcccccc
Q psy6353 98 ESLFSPYGRIITSRILCDN-LA-TEN----GKYYSGLGGRERLR 135 (136)
Q Consensus 98 ~~~f~~~G~v~~~~i~~~~-~~-~~~----~~~fv~f~~~e~~~ 135 (136)
..+-.+...|.++.+.++. .. +.. -+.+++|+|.|+++
T Consensus 28 ~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~l~~~F~s~e~l~ 71 (111)
T 1rjj_A 28 ENLVSQIDTVKSFEWGEDKESHDMLRQGFTHAFSMTFENKDGYV 71 (111)
T ss_dssp HHHHGGGGGSCEEEEEEECCSCTTTSTTCCEEEEEEESSHHHHH
T ss_pred HHHHhcCCceEEEEEcCCCCCccccCCCccEEEEEEECCHHHHH
Confidence 3444455667888777765 32 221 23689999998864
No 425
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=27.00 E-value=95 Score=17.84 Aligned_cols=21 Identities=14% Similarity=0.346 Sum_probs=15.2
Q ss_pred cCCCceeeEEEEcCCHHHHHHH
Q psy6353 31 STAQSLGYGFVNYHRPEDAEKA 52 (136)
Q Consensus 31 ~~~~~kg~~fv~f~~~~~a~~a 52 (136)
-.|++.|||.| |.+.+.|...
T Consensus 60 G~gkstG~a~I-Yds~e~akk~ 80 (102)
T 1ywx_A 60 GKLEAEGYAKI-YNDEKAMATI 80 (102)
T ss_dssp SSSEEEEEEEE-CSCHHHHHHS
T ss_pred CCceEEEEEEE-ECCHHHHHhh
Confidence 45778888866 8887777653
No 426
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, STRU genomics, oxford protein production facility, OPPF, gene RE; 2.60A {Neisseria meningitidis MC58}
Probab=26.85 E-value=22 Score=18.61 Aligned_cols=12 Identities=25% Similarity=0.736 Sum_probs=9.1
Q ss_pred CceeeEEEEcCC
Q psy6353 34 QSLGYGFVNYHR 45 (136)
Q Consensus 34 ~~kg~~fv~f~~ 45 (136)
..||||||+=.+
T Consensus 11 ~~kGfGFI~~~~ 22 (67)
T 3cam_A 11 DAKGFGFITPDE 22 (67)
T ss_dssp TTTTEEEEEETT
T ss_pred CCCCeEEEecCC
Confidence 468999998654
No 427
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=26.60 E-value=73 Score=19.36 Aligned_cols=33 Identities=18% Similarity=0.139 Sum_probs=25.8
Q ss_pred eeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcC
Q psy6353 23 AEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNG 58 (136)
Q Consensus 23 v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~ 58 (136)
+.++.++. ..+||-||++...++...++....|
T Consensus 33 i~~v~vp~---~fPGYVfVe~~~~~~~~~~v~~t~g 65 (152)
T 3p8b_B 33 IYAILAPS---RVKGYIFVEAPNKGVVDEAIRGIRH 65 (152)
T ss_dssp CCEEEECT---TCCSEEEEEESSHHHHHHHHTTCTT
T ss_pred EEEEEeec---CCCcEEEEEEEchHHHHHHHhCCCC
Confidence 55666553 4789999999999888888877766
No 428
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=26.58 E-value=22 Score=18.45 Aligned_cols=12 Identities=33% Similarity=0.808 Sum_probs=9.0
Q ss_pred CceeeEEEEcCC
Q psy6353 34 QSLGYGFVNYHR 45 (136)
Q Consensus 34 ~~kg~~fv~f~~ 45 (136)
..||||||+=.+
T Consensus 11 ~~kGfGFI~~~~ 22 (66)
T 1c9o_A 11 NEKGYGFIEVEG 22 (66)
T ss_dssp TTTTEEEEEETT
T ss_pred CCCCeEEEecCC
Confidence 357999998654
No 429
>2h7a_A Hypothetical protein YCGL; mixed alpha/beta/alpha sandwich structure, 3-layer (alpha/BE sandwich, beta-sheet layer antiparallel 3124 topology; NMR {Escherichia coli} SCOP: d.350.1.1
Probab=26.26 E-value=74 Score=18.62 Aligned_cols=56 Identities=16% Similarity=0.264 Sum_probs=34.3
Q ss_pred CeeecCCChhhh-HHHHhccCCCeeEEEEEccCCCceeeEEEEcCCHHHHHHHHHHHcCcee
Q psy6353 1 MVYQTLLNKLFT-YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRL 61 (136)
Q Consensus 1 ~v~v~nl~~~~~-l~~~f~~~G~v~~~~~~~~~~~~kg~~fv~f~~~~~a~~a~~~~~~~~~ 61 (136)
||||..=+..-. .+++...||+-..+.....++..+ +.-.|.+.+..++.. +|..+
T Consensus 28 YLYV~k~ddfs~VPe~Ll~~FG~p~~vM~l~L~~~kk----LA~ad~~kV~~~L~e-qGfyL 84 (110)
T 2h7a_A 28 YLYVEKKDDFSRVPEELMKGFGQPQLAMILPLDGRKK----LVNADIEKVKQALTE-QGYYL 84 (110)
T ss_dssp EEEESSSSCCCSSCHHHHHHHCSEEEEEEECSSSCCC----CSSSCHHHHHHHHHH-TSEEE
T ss_pred EEEEECCCCcccCCHHHHHhcCCCcEEEEEecCCCch----hhhCCHHHHHHHHHh-CCEEE
Confidence 567755433222 567778899887776665222221 335588899989885 56543
No 430
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=25.50 E-value=1e+02 Score=17.82 Aligned_cols=21 Identities=19% Similarity=0.200 Sum_probs=15.5
Q ss_pred cCCCceeeEEEEcCCHHHHHHH
Q psy6353 31 STAQSLGYGFVNYHRPEDAEKA 52 (136)
Q Consensus 31 ~~~~~kg~~fv~f~~~~~a~~a 52 (136)
-.|++.|||.| |.|.+.|...
T Consensus 69 G~gkstG~a~I-Yds~e~akk~ 89 (107)
T 2v94_A 69 GSYKSKGYAKY-YYDKDRMLYI 89 (107)
T ss_dssp TCSEEEEEEEE-ESSHHHHHHH
T ss_pred CCceEEEEEEE-ECCHHHHHhh
Confidence 45778899966 8888877654
No 431
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=25.31 E-value=24 Score=18.78 Aligned_cols=12 Identities=33% Similarity=0.764 Sum_probs=9.1
Q ss_pred CceeeEEEEcCC
Q psy6353 34 QSLGYGFVNYHR 45 (136)
Q Consensus 34 ~~kg~~fv~f~~ 45 (136)
..||||||+=.+
T Consensus 11 ~~kGfGFI~~~~ 22 (73)
T 3a0j_A 11 AEKGYGFIEREG 22 (73)
T ss_dssp TTTTEEEEECTT
T ss_pred CCCCEEEEecCC
Confidence 467999998654
No 432
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=24.73 E-value=25 Score=18.25 Aligned_cols=12 Identities=33% Similarity=0.791 Sum_probs=9.1
Q ss_pred CceeeEEEEcCC
Q psy6353 34 QSLGYGFVNYHR 45 (136)
Q Consensus 34 ~~kg~~fv~f~~ 45 (136)
..||||||+=.+
T Consensus 10 ~~kGfGFI~~~~ 21 (66)
T 1g6p_A 10 SKKGYGFITKDE 21 (66)
T ss_dssp TTTTEEEEEETT
T ss_pred CCCCEEEEecCC
Confidence 458999998654
No 433
>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=24.47 E-value=28 Score=18.88 Aligned_cols=11 Identities=45% Similarity=0.896 Sum_probs=8.6
Q ss_pred CceeeEEEEcC
Q psy6353 34 QSLGYGFVNYH 44 (136)
Q Consensus 34 ~~kg~~fv~f~ 44 (136)
..||||||+=.
T Consensus 18 ~~kGfGFI~~~ 28 (79)
T 1h95_A 18 VRNGYGFINRN 28 (79)
T ss_dssp TTTTEEEEEEG
T ss_pred CCCCcEEEecC
Confidence 46899999854
No 434
>2jsh_A Appetite-regulating hormone, obestatin; micellar solution, DPC, SDS, alternative splicing, amidation, lipoprotein, secreted; NMR {Synthetic} PDB: 2jsj_A
Probab=24.21 E-value=45 Score=14.08 Aligned_cols=22 Identities=14% Similarity=0.237 Sum_probs=12.9
Q ss_pred CCCCCCCHHHHHHhhcCCCceE
Q psy6353 87 GLPKHMSQQELESLFSPYGRII 108 (136)
Q Consensus 87 nl~~~~t~~~l~~~f~~~G~v~ 108 (136)
|.|.++.-..-.+.|.+||.+.
T Consensus 2 naPFeiGi~ls~~~y~~yG~~L 23 (26)
T 2jsh_A 2 NAPFDVGIKLSGAQYQQHGRAL 23 (26)
T ss_dssp CSCSSTTGGGHHHHCSCSSSCC
T ss_pred CCceeEeeEecHHHHHHHhHHh
Confidence 3455554444456678888653
No 435
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=23.84 E-value=1.6e+02 Score=22.75 Aligned_cols=44 Identities=14% Similarity=0.181 Sum_probs=33.6
Q ss_pred HHHHhc----cCCCeeEEEEEc-cCCCceeeEEEEcCCHHHHHHHHHHH
Q psy6353 13 YEKVHL----GFSDAEICVFLI-STAQSLGYGFVNYHRPEDAEKAINTL 56 (136)
Q Consensus 13 l~~~f~----~~G~v~~~~~~~-~~~~~kg~~fv~f~~~~~a~~a~~~~ 56 (136)
|..+|- .+|-|+++.+-. .......++++.|.+.++|..++..+
T Consensus 360 L~~L~iGSEGTLGIITeatLrL~P~P~~~~~~~~~f~d~~~a~~av~~i 408 (658)
T 4bby_A 360 IHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREI 408 (658)
T ss_dssp THHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHhccCCCcCcceeeeeeeeccCCccccccccccCCchhhhhhHHHH
Confidence 556652 577888887766 56667788999999999998887755
No 436
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=23.79 E-value=17 Score=22.44 Aligned_cols=11 Identities=27% Similarity=0.866 Sum_probs=8.8
Q ss_pred CceeeEEEEcC
Q psy6353 34 QSLGYGFVNYH 44 (136)
Q Consensus 34 ~~kg~~fv~f~ 44 (136)
..||||||+-.
T Consensus 19 ~~kGfGFI~~~ 29 (148)
T 3ts2_A 19 VRMGFGFLSMT 29 (148)
T ss_dssp TTTTEEEEEEE
T ss_pred CCCCeeEEeeC
Confidence 46799999875
No 437
>3i2z_B RNA chaperone, negative regulator of CSPA transcription; beta barrel, DNA binding protein/transcription, cytoplasm, gene regulation; 1.10A {Salmonella typhimurium} SCOP: b.40.4.5 PDB: 2l15_A 1mjc_A 3mef_A
Probab=22.89 E-value=29 Score=18.35 Aligned_cols=12 Identities=33% Similarity=0.769 Sum_probs=9.2
Q ss_pred CceeeEEEEcCC
Q psy6353 34 QSLGYGFVNYHR 45 (136)
Q Consensus 34 ~~kg~~fv~f~~ 45 (136)
..||||||+=.+
T Consensus 15 ~~kGfGFI~~~~ 26 (71)
T 3i2z_B 15 ESKGFGFITPED 26 (71)
T ss_dssp TTTTEEEEEETT
T ss_pred CCCCcEEEecCC
Confidence 468999998754
No 438
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=22.73 E-value=43 Score=19.14 Aligned_cols=19 Identities=21% Similarity=0.246 Sum_probs=11.9
Q ss_pred CCCceeeEEEEcCCHHHHHH
Q psy6353 32 TAQSLGYGFVNYHRPEDAEK 51 (136)
Q Consensus 32 ~~~~kg~~fv~f~~~~~a~~ 51 (136)
.|++.|||.| |.|.+.|..
T Consensus 62 ~gks~G~a~I-Yds~e~~kk 80 (98)
T 2g1d_A 62 KHEIEGYTKI-YADKPSAML 80 (98)
T ss_dssp SSEEEEEEEE-ESHHHHHHH
T ss_pred CceEEEEEEE-ECCHHHHHh
Confidence 4667888865 666555544
No 439
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=22.13 E-value=57 Score=18.07 Aligned_cols=49 Identities=10% Similarity=0.020 Sum_probs=33.6
Q ss_pred EEEcCCCCCCCHHHHHHhhcC-CC-ceEEEEEEeCCCCCCccceEeecCcccc
Q psy6353 83 LYVSGLPKHMSQQELESLFSP-YG-RIITSRILCDNLATENGKYYSGLGGRER 133 (136)
Q Consensus 83 l~v~nl~~~~t~~~l~~~f~~-~G-~v~~~~i~~~~~~~~~~~~fv~f~~~e~ 133 (136)
-|+-.++..++..++++.+.. || +|..++-...+. .-+.|||.+...++
T Consensus 24 ~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~~--~~KKA~VtL~~g~~ 74 (85)
T 1vq8_S 24 KLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMD--GEKKAVVRLSEDDD 74 (85)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTT--SSEEEEEEECTTSC
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecCC--CceEEEEEECCCCc
Confidence 344456889999999887764 34 567777666542 23569999977654
No 440
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=21.08 E-value=1.3e+02 Score=22.32 Aligned_cols=41 Identities=7% Similarity=0.054 Sum_probs=28.7
Q ss_pred HHHHh--ccCCCeeEEEEEc-cCCCceeeEEEEcCCHHHHHHHH
Q psy6353 13 YEKVH--LGFSDAEICVFLI-STAQSLGYGFVNYHRPEDAEKAI 53 (136)
Q Consensus 13 l~~~f--~~~G~v~~~~~~~-~~~~~kg~~fv~f~~~~~a~~a~ 53 (136)
+..+| +.+|-|+++.+.. ........+++.|.+.+++..++
T Consensus 218 l~~l~~g~~lGiVt~~~l~l~p~p~~~~~~~~~f~~~~~~~~~~ 261 (520)
T 1wvf_A 218 LDGMFTQANYGICTKMGFWLMPKPPVFKPFEVIFEDEADIVEIV 261 (520)
T ss_dssp CHHHHTTSSSCEEEEEEEECEECCSEEEEEEEEECCGGGHHHHH
T ss_pred hhhhccCCceEEEEEEEEEEEecCCeEEEEEEEeCCHHHHHHHH
Confidence 45555 3588899887766 55555667889999877766544
No 441
>2yty_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=21.06 E-value=37 Score=18.87 Aligned_cols=10 Identities=20% Similarity=0.557 Sum_probs=8.2
Q ss_pred eeeEEEEcCC
Q psy6353 36 LGYGFVNYHR 45 (136)
Q Consensus 36 kg~~fv~f~~ 45 (136)
||||||+-.+
T Consensus 28 kGfGFI~~dd 37 (88)
T 2yty_A 28 DNFGFIETAN 37 (88)
T ss_dssp SSEEEEECSS
T ss_pred CCccEEecCC
Confidence 7999998654
No 442
>2ytx_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=20.24 E-value=39 Score=19.15 Aligned_cols=11 Identities=18% Similarity=0.516 Sum_probs=8.9
Q ss_pred ceeeEEEEcCC
Q psy6353 35 SLGYGFVNYHR 45 (136)
Q Consensus 35 ~kg~~fv~f~~ 45 (136)
.||||||+-.+
T Consensus 27 ~KGfGFI~~dd 37 (97)
T 2ytx_A 27 KEAFGFIERGD 37 (97)
T ss_dssp CSSEEEEECSS
T ss_pred eCCceEEecCC
Confidence 68999998654
No 443
>3bn7_A Ferredoxin-like protein; stress responsive A/B barre structural genomics, joint center for structural genomics; HET: MSE; 1.64A {Caulobacter crescentus}
Probab=20.18 E-value=1.3e+02 Score=17.46 Aligned_cols=53 Identities=8% Similarity=-0.042 Sum_probs=32.7
Q ss_pred EEEcCCCCCCCHHHHHHhh------cCCCceEEEEEEeCCCC----CCcc----ceEeecCcccccc
Q psy6353 83 LYVSGLPKHMSQQELESLF------SPYGRIITSRILCDNLA----TENG----KYYSGLGGRERLR 135 (136)
Q Consensus 83 l~v~nl~~~~t~~~l~~~f------~~~G~v~~~~i~~~~~~----~~~~----~~fv~f~~~e~~~ 135 (136)
+.+-.+.+.++++++.++. .....|.++.+.++... +..+ +.+++|+|.|+++
T Consensus 24 IVlfklK~~~~~~~~~~~~~~l~~L~~Ip~i~~~~vG~~~s~e~R~~~~~g~d~~l~~~F~s~edl~ 90 (120)
T 3bn7_A 24 QVFFWLKNPGDKADRDKLIAGLKALKAIDVIQQLHVGVPAATEKRDVVDNSYDVSELMVFKSVEDQK 90 (120)
T ss_dssp EEEEEESSTTCHHHHHHHHHHHHGGGGSTTCSEEEEECCCCCCCCTTCCCCCSEEEEEEESSHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHhccCCCCeEEEEEccCCCcccccccCCCccEEEEEEECCHHHHH
Confidence 3344466777776643332 24566788888877653 1222 3689999998764
Done!