Your job contains 1 sequence.
>psy6353
MVYQTLLNKLFTYEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLR
LQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATE
NGKYYSGLGGRERLRR
The BLAST search returned 11 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy6353
(136 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0010263 - symbol:Rbp9 "RNA-binding protein 9" spec... 392 2.1e-36 1
FB|FBgn0086675 - symbol:fne "found in neurons" species:72... 363 2.5e-33 1
FB|FBgn0260400 - symbol:elav "embryonic lethal abnormal v... 344 2.6e-31 1
UNIPROTKB|E1C240 - symbol:ELAVL2 "Uncharacterized protein... 344 2.6e-31 1
UNIPROTKB|F1NLH0 - symbol:ELAVL4 "Uncharacterized protein... 344 2.6e-31 1
UNIPROTKB|A2VDK5 - symbol:ELAVL4 "Uncharacterized protein... 344 2.6e-31 1
UNIPROTKB|G3N063 - symbol:ELAVL2 "Uncharacterized protein... 344 2.6e-31 1
UNIPROTKB|E2RI94 - symbol:ELAVL2 "Uncharacterized protein... 344 2.6e-31 1
UNIPROTKB|F1P856 - symbol:ELAVL4 "Uncharacterized protein... 344 2.6e-31 1
UNIPROTKB|J9PAL3 - symbol:ELAVL4 "Uncharacterized protein... 344 2.6e-31 1
UNIPROTKB|B1AM48 - symbol:ELAVL2 "ELAV-like protein 2" sp... 344 2.6e-31 1
UNIPROTKB|B1AM49 - symbol:ELAVL2 "ELAV-like protein 2" sp... 344 2.6e-31 1
UNIPROTKB|B1APY8 - symbol:ELAVL4 "ELAV-like protein 4" sp... 344 2.6e-31 1
UNIPROTKB|B1APY9 - symbol:ELAVL4 "cDNA FLJ50619, highly s... 344 2.6e-31 1
UNIPROTKB|P26378 - symbol:ELAVL4 "ELAV-like protein 4" sp... 344 2.6e-31 1
UNIPROTKB|Q12926 - symbol:ELAVL2 "ELAV-like protein 2" sp... 344 2.6e-31 1
MGI|MGI:1100887 - symbol:Elavl2 "ELAV (embryonic lethal, ... 344 2.6e-31 1
MGI|MGI:107427 - symbol:Elavl4 "ELAV (embryonic lethal, a... 344 2.6e-31 1
RGD|1560027 - symbol:Elavl4 "ELAV (embryonic lethal, abno... 344 2.6e-31 1
RGD|628611 - symbol:Elavl2 "ELAV (embryonic lethal, abnor... 344 2.6e-31 1
UNIPROTKB|D4A7H6 - symbol:Elavl2 "ELAV-like protein 2" sp... 344 2.6e-31 1
UNIPROTKB|D4AAT0 - symbol:Elavl4 "ELAV-like protein 4" sp... 344 2.6e-31 1
UNIPROTKB|F1LRL1 - symbol:Elavl4 "ELAV-like protein 4" sp... 344 2.6e-31 1
UNIPROTKB|F1LRX3 - symbol:Elavl4 "ELAV-like protein 4" sp... 344 2.6e-31 1
UNIPROTKB|O09032 - symbol:Elavl4 "ELAV-like protein 4" sp... 344 2.6e-31 1
UNIPROTKB|Q8CH84 - symbol:Elavl2 "ELAV-like protein 2" sp... 344 2.6e-31 1
ZFIN|ZDB-GENE-990415-246 - symbol:elavl4 "ELAV (embryonic... 344 2.6e-31 1
UNIPROTKB|F1SNK9 - symbol:ELAVL2 "Uncharacterized protein... 343 3.3e-31 1
UNIPROTKB|Q91903 - symbol:elavl2 "ELAV-like protein 2" sp... 343 3.3e-31 1
ZFIN|ZDB-GENE-040704-9 - symbol:elavl2 "ELAV (embryonic l... 343 3.3e-31 1
UNIPROTKB|F1N4V6 - symbol:ELAVL3 "Uncharacterized protein... 342 4.2e-31 1
UNIPROTKB|F1PVV1 - symbol:ELAVL3 "Uncharacterized protein... 342 4.2e-31 1
UNIPROTKB|Q14576 - symbol:ELAVL3 "ELAV-like protein 3" sp... 342 4.2e-31 1
UNIPROTKB|F1SA16 - symbol:ELAVL3 "Uncharacterized protein... 342 4.2e-31 1
MGI|MGI:109157 - symbol:Elavl3 "ELAV (embryonic lethal, a... 341 5.4e-31 1
RGD|628892 - symbol:Elavl3 "ELAV (embryonic lethal, abnor... 341 5.4e-31 1
ZFIN|ZDB-GENE-980526-76 - symbol:elavl3 "ELAV (embryonic ... 335 2.3e-30 1
WB|WBGene00001368 - symbol:exc-7 species:6239 "Caenorhabd... 325 2.7e-29 1
ZFIN|ZDB-GENE-000210-17 - symbol:hug "HuG" species:7955 "... 315 3.1e-28 1
UNIPROTKB|D3K5N7 - symbol:ELAVL1 "ELAV (Embryonic lethal,... 313 5.0e-28 1
ZFIN|ZDB-GENE-990415-245 - symbol:elavl1 "ELAV (embryonic... 313 5.0e-28 1
UNIPROTKB|Q1JQ73 - symbol:elavl1-a "ELAV-like protein 1-A... 310 1.0e-27 1
UNIPROTKB|Q3ZCE2 - symbol:ELAVL1 "ELAV (Embryonic lethal,... 307 2.2e-27 1
UNIPROTKB|Q6GLB5 - symbol:elavl1 "ELAV-like protein 1" sp... 306 2.8e-27 1
UNIPROTKB|F1N9I5 - symbol:ELAVL1 "Uncharacterized protein... 305 3.5e-27 1
UNIPROTKB|F1PSC4 - symbol:ELAVL1 "Uncharacterized protein... 304 4.5e-27 1
UNIPROTKB|B4DVB8 - symbol:ELAVL1 "ELAV-like protein 1" sp... 304 4.5e-27 1
UNIPROTKB|Q15717 - symbol:ELAVL1 "ELAV-like protein 1" sp... 304 4.5e-27 1
UNIPROTKB|Q5U259 - symbol:elavl1-b "ELAV-like protein 1-B... 302 7.3e-27 1
MGI|MGI:1100851 - symbol:Elavl1 "ELAV (embryonic lethal, ... 299 1.5e-26 1
RGD|1308649 - symbol:Elavl1 "ELAV (embryonic lethal, abno... 299 1.5e-26 1
FB|FBgn0264270 - symbol:Sxl "Sex lethal" species:7227 "Dr... 216 1.7e-17 1
FB|FBgn0024987 - symbol:ssx "sister-of-Sex-lethal" specie... 218 3.3e-17 1
DICTYBASE|DDB_G0292472 - symbol:DDB_G0292472 species:4468... 178 9.4e-13 1
DICTYBASE|DDB_G0290307 - symbol:DDB_G0290307 "ELAVL1-like... 109 4.9e-12 2
UNIPROTKB|F1SLB3 - symbol:RBMS2 "Uncharacterized protein"... 158 2.6e-11 1
UNIPROTKB|E5RGH3 - symbol:PABPC1 "Polyadenylate-binding p... 155 2.8e-11 1
FB|FBgn0038345 - symbol:CG5213 species:7227 "Drosophila m... 155 3.3e-11 1
UNIPROTKB|F1P990 - symbol:RBMS2 "Uncharacterized protein"... 161 3.6e-11 1
UNIPROTKB|E7ETU5 - symbol:RBMS1 "RNA-binding motif, singl... 160 3.8e-11 1
UNIPROTKB|O73664 - symbol:RBMS1 "Uncharacterized protein"... 160 3.8e-11 1
UNIPROTKB|E1C5J3 - symbol:RBMS1 "Uncharacterized protein"... 160 4.4e-11 1
UNIPROTKB|Q3ZBP3 - symbol:RBMS1 "RNA-binding motif, singl... 160 4.6e-11 1
UNIPROTKB|E2RM13 - symbol:RBMS1 "Uncharacterized protein"... 160 4.6e-11 1
UNIPROTKB|P29558 - symbol:RBMS1 "RNA-binding motif, singl... 160 4.6e-11 1
UNIPROTKB|B4DN88 - symbol:RBMS1 "RNA-binding motif, singl... 160 5.0e-11 1
UNIPROTKB|E2RMT9 - symbol:RBMS1 "Uncharacterized protein"... 160 5.0e-11 1
UNIPROTKB|F8W1T6 - symbol:RBMS2 "RNA-binding motif, singl... 158 5.2e-11 1
RGD|1307777 - symbol:Rbms1 "RNA binding motif, single str... 159 5.9e-11 1
UNIPROTKB|Q5PQP1 - symbol:Rbms1 "RNA-binding motif, singl... 159 5.9e-11 1
UNIPROTKB|D4A6H0 - symbol:Rbms1 "RNA-binding motif, singl... 159 6.1e-11 1
UNIPROTKB|Q3ZC34 - symbol:RBMS2 "RNA-binding motif, singl... 158 7.7e-11 1
UNIPROTKB|Q15434 - symbol:RBMS2 "RNA-binding motif, singl... 158 7.7e-11 1
UNIPROTKB|F1RPR6 - symbol:RBMS1 "Uncharacterized protein"... 157 8.3e-11 1
TAIR|locus:2058573 - symbol:PAB4 "AT2G23350" species:3702... 161 8.5e-11 1
UNIPROTKB|D4A988 - symbol:Rbms2 "Protein Rbms2" species:1... 156 9.1e-11 1
TAIR|locus:2124261 - symbol:PAB2 "AT4G34110" species:3702... 160 1.0e-10 1
RGD|1304813 - symbol:Rbms2 "RNA binding motif, single str... 156 1.1e-10 1
TAIR|locus:2012161 - symbol:PAB8 "AT1G49760" species:3702... 160 1.1e-10 1
UNIPROTKB|G3MYW4 - symbol:PABPC1L2A "Uncharacterized prot... 149 1.2e-10 1
UNIPROTKB|G3MZ94 - symbol:PABPC1L2A "Uncharacterized prot... 149 1.2e-10 1
UNIPROTKB|Q5JQF8 - symbol:PABPC1L2A "Polyadenylate-bindin... 149 1.2e-10 1
UNIPROTKB|F1RPL9 - symbol:LOC100623240 "Uncharacterized p... 149 1.2e-10 1
UNIPROTKB|B1ANR0 - symbol:PABPC4 "Polyadenylate-binding p... 159 1.3e-10 1
UNIPROTKB|E1C903 - symbol:PABPC4 "Uncharacterized protein... 159 1.3e-10 1
UNIPROTKB|E2R9I0 - symbol:PABPC4 "Uncharacterized protein... 159 1.3e-10 1
UNIPROTKB|F1SV06 - symbol:PABPC4 "Uncharacterized protein... 159 1.3e-10 1
UNIPROTKB|D4AC14 - symbol:Pabpc4 "Protein Pabpc4" species... 159 1.3e-10 1
UNIPROTKB|Q13310 - symbol:PABPC4 "Polyadenylate-binding p... 159 1.3e-10 1
UNIPROTKB|A4IFC3 - symbol:PABPC4 "Uncharacterized protein... 159 1.3e-10 1
UNIPROTKB|G3V9N0 - symbol:Pabpc4 "RCG31475, isoform CRA_a... 159 1.4e-10 1
MGI|MGI:1861776 - symbol:Rbms2 "RNA binding motif, single... 155 1.4e-10 1
UNIPROTKB|E2RQC8 - symbol:PABPC1 "Uncharacterized protein... 158 1.5e-10 1
UNIPROTKB|H0YAP2 - symbol:PABPC1 "Polyadenylate-binding p... 96 1.6e-10 2
UNIPROTKB|Q6IP09 - symbol:pabpc1-b "Polyadenylate-binding... 158 1.7e-10 1
UNIPROTKB|P61286 - symbol:PABPC1 "Polyadenylate-binding p... 158 1.7e-10 1
UNIPROTKB|J9P326 - symbol:PABPC1 "Uncharacterized protein... 158 1.7e-10 1
UNIPROTKB|P11940 - symbol:PABPC1 "Polyadenylate-binding p... 158 1.7e-10 1
UNIPROTKB|F2Z557 - symbol:PABPC1 "Uncharacterized protein... 158 1.7e-10 1
UNIPROTKB|Q5R8F7 - symbol:PABPC1 "Polyadenylate-binding p... 158 1.7e-10 1
WARNING: Descriptions of 246 database sequences were not reported due to the
limiting value of parameter V = 100.
>FB|FBgn0010263 [details] [associations]
symbol:Rbp9 "RNA-binding protein 9" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0007293
"germarium-derived egg chamber formation" evidence=TAS] [GO:0005634
"nucleus" evidence=TAS] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0048477
"oogenesis" evidence=IMP] [GO:0036093 "germ cell proliferation"
evidence=IMP] [GO:0060856 "establishment of blood-brain barrier"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0007293 TIGRFAMs:TIGR01661
HSSP:P26378 GO:GO:0060856 FlyBase:FBgn0010263 EMBL:S55886
ProteinModelPortal:Q26293 SMR:Q26293 STRING:Q26293 PRIDE:Q26293
InParanoid:Q26293 ArrayExpress:Q26293 Bgee:Q26293 Uniprot:Q26293
Length = 444
Score = 392 (143.0 bits), Expect = 2.1e-36, P = 2.1e-36
Identities = 81/115 (70%), Positives = 92/115 (80%)
Query: 18 LGFSDAEICVFLIS--TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSS 75
+ F + E C + T QSLGYGFVNY + EDAEKAIN LNGLRLQNKTIKVS ARPSS
Sbjct: 131 VSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAINALNGLRLQNKTIKVSIARPSS 190
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYS-GLG 129
ESIKGANLYVSGLPK+M+Q +LESLFSPYG+IITSRILCDN+ E+ S G+G
Sbjct: 191 ESIKGANLYVSGLPKNMTQSDLESLFSPYGKIITSRILCDNITGEHAAGLSKGVG 245
>FB|FBgn0086675 [details] [associations]
symbol:fne "found in neurons" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0051252 "regulation of
RNA metabolic process" evidence=IMP] [GO:0008266 "poly(U) RNA
binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008049 "male courtship behavior" evidence=IMP]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0008266 GO:GO:0000166
EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330 eggNOG:COG0724
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 KO:K13208
OMA:SNSRNCP HSSP:Q60900 GO:GO:0051252 EMBL:AF239667 EMBL:BT120384
RefSeq:NP_001096965.1 RefSeq:NP_001245646.1 RefSeq:NP_001245648.1
RefSeq:NP_001245649.1 RefSeq:NP_572842.1 UniGene:Dm.3314 SMR:Q9VYI0
IntAct:Q9VYI0 MINT:MINT-1646975 STRING:Q9VYI0
EnsemblMetazoa:FBtr0073712 EnsemblMetazoa:FBtr0113493
EnsemblMetazoa:FBtr0306738 EnsemblMetazoa:FBtr0308694
EnsemblMetazoa:FBtr0308695 EnsemblMetazoa:FBtr0333319
EnsemblMetazoa:FBtr0333320 GeneID:32245 KEGG:dme:Dmel_CG4396
UCSC:CG4396-RA CTD:32245 FlyBase:FBgn0086675 InParanoid:Q9VYI0
OrthoDB:EOG44B8HT GenomeRNAi:32245 NextBio:777561 Uniprot:Q9VYI0
Length = 356
Score = 363 (132.8 bits), Expect = 2.5e-33, P = 2.5e-33
Identities = 69/89 (77%), Positives = 80/89 (89%)
Query: 30 ISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLP 89
+ QSLGYGFVNY R EDAEKA+NTLNGLRLQNK IKVSYARPSSESIKGANLYVSGLP
Sbjct: 79 LQQGQSLGYGFVNYVRAEDAEKAVNTLNGLRLQNKVIKVSYARPSSESIKGANLYVSGLP 138
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLA 118
K++SQ +LE +F+ +G+IITSRILCDN++
Sbjct: 139 KNLSQPDLEGMFASFGKIITSRILCDNIS 167
>FB|FBgn0260400 [details] [associations]
symbol:elav "embryonic lethal abnormal vision" species:7227
"Drosophila melanogaster" [GO:0005634 "nucleus" evidence=IDA;TAS]
[GO:0015030 "Cajal body" evidence=IDA] [GO:0007417 "central nervous
system development" evidence=IMP] [GO:0016070 "RNA metabolic
process" evidence=NAS] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0007399 "nervous system development" evidence=NAS] [GO:0008266
"poly(U) RNA binding" evidence=IDA] [GO:0031441 "negative
regulation of mRNA 3'-end processing" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0008266 GO:GO:0000166
EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330 EMBL:AL022139
GO:GO:0007417 GO:GO:0009790 GO:GO:0007281 GO:GO:0015030
GO:GO:0000900 GO:GO:0031441 GO:GO:0007319 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 EMBL:M21152 EMBL:AY051822
PIR:A33130 RefSeq:NP_001014713.1 RefSeq:NP_001138142.1
RefSeq:NP_001245447.1 RefSeq:NP_525033.1 UniGene:Dm.4473
ProteinModelPortal:P16914 SMR:P16914 DIP:DIP-23700N IntAct:P16914
MINT:MINT-1597597 STRING:P16914 PaxDb:P16914 PRIDE:P16914
EnsemblMetazoa:FBtr0070091 EnsemblMetazoa:FBtr0307173 GeneID:31000
KEGG:dme:Dmel_CG4262 CTD:31000 FlyBase:FBgn0260400 eggNOG:NOG256997
InParanoid:Q7K7L9 OMA:DIGESKT PhylomeDB:P16914 GenomeRNAi:31000
NextBio:771397 Bgee:P16914 GermOnline:CG4262 Uniprot:P16914
Length = 483
Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
Identities = 66/83 (79%), Positives = 77/83 (92%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
S QSLGYGFVNY RP+DAE+A+N LNGLRLQNKTIKVS+ARPSS++IKGANLYVSGLPK
Sbjct: 198 SKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDAIKGANLYVSGLPK 257
Query: 91 HMSQQELESLFSPYGRIITSRIL 113
M+QQELE++F+P+G IITSRIL
Sbjct: 258 TMTQQELEAIFAPFGAIITSRIL 280
>UNIPROTKB|E1C240 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AADN02057847
EMBL:AADN02057848 EMBL:AADN02057849 EMBL:AADN02057850
IPI:IPI00584568 ProteinModelPortal:E1C240
Ensembl:ENSGALT00000025475 Uniprot:E1C240
Length = 388
Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
Identities = 70/86 (81%), Positives = 75/86 (87%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 104 TGQSLGYGFVNYVDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 163
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 164 MTQKELEQLFSQYGRIITSRILVDQV 189
>UNIPROTKB|F1NLH0 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:SNSRNCP
EMBL:AADN02012596 IPI:IPI00594347 ProteinModelPortal:F1NLH0
Ensembl:ENSGALT00000017146 Uniprot:F1NLH0
Length = 371
Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
Identities = 70/86 (81%), Positives = 75/86 (87%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 88 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 147
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 148 MTQKELEQLFSQYGRIITSRILVDQV 173
>UNIPROTKB|A2VDK5 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
OMA:SNSRNCP EMBL:DAAA02008922 EMBL:DAAA02008923 EMBL:BC133283
IPI:IPI00729244 RefSeq:NP_001075075.1 UniGene:Bt.26853 SMR:A2VDK5
STRING:A2VDK5 Ensembl:ENSBTAT00000028031 GeneID:535408
KEGG:bta:535408 InParanoid:A2VDK5 NextBio:20876736 Uniprot:A2VDK5
Length = 366
Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
Identities = 70/86 (81%), Positives = 75/86 (87%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 83 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 142
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 143 MTQKELEQLFSQYGRIITSRILVDQV 168
>UNIPROTKB|G3N063 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:DAAA02022184
EMBL:DAAA02022185 Ensembl:ENSBTAT00000065940 Uniprot:G3N063
Length = 388
Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
Identities = 70/86 (81%), Positives = 75/86 (87%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 105 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 164
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 165 MTQKELEQLFSQYGRIITSRILVDQV 190
>UNIPROTKB|E2RI94 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AAEX03007909
EMBL:AAEX03007910 EMBL:AAEX03007911 EMBL:AAEX03007912
Ensembl:ENSCAFT00000002645 Uniprot:E2RI94
Length = 388
Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
Identities = 70/86 (81%), Positives = 75/86 (87%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 105 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 164
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 165 MTQKELEQLFSQYGRIITSRILVDQV 190
>UNIPROTKB|F1P856 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:SNSRNCP EMBL:AAEX03009733
Ensembl:ENSCAFT00000006315 Uniprot:F1P856
Length = 382
Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
Identities = 70/86 (81%), Positives = 75/86 (87%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 99 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 158
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 159 MTQKELEQLFSQYGRIITSRILVDQV 184
>UNIPROTKB|J9PAL3 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1996 EMBL:AAEX03009733
RefSeq:XP_859918.1 ProteinModelPortal:J9PAL3
Ensembl:ENSCAFT00000045412 GeneID:475361 KEGG:cfa:475361
Uniprot:J9PAL3
Length = 366
Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
Identities = 70/86 (81%), Positives = 75/86 (87%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 83 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 142
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 143 MTQKELEQLFSQYGRIITSRILVDQV 168
>UNIPROTKB|B1AM48 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623 UniGene:Hs.166109
HGNC:HGNC:3313 OrthoDB:EOG4JHCFV IPI:IPI00184721 SMR:B1AM48
Ensembl:ENST00000440102 Uniprot:B1AM48
Length = 189
Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
Identities = 70/86 (81%), Positives = 75/86 (87%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 76 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 135
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 136 MTQKELEQLFSQYGRIITSRILVDQV 161
>UNIPROTKB|B1AM49 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623
UniGene:Hs.166109 HGNC:HGNC:3313 OMA:RAVENGP SMR:B1AM49
Ensembl:ENST00000359598 Uniprot:B1AM49
Length = 387
Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
Identities = 70/86 (81%), Positives = 75/86 (87%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 104 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 163
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 164 MTQKELEQLFSQYGRIITSRILVDQV 189
>UNIPROTKB|B1APY8 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AL583843 EMBL:AL592182
EMBL:AL731870 UniGene:Hs.213050 HGNC:HGNC:3315 OMA:SNSRNCP
IPI:IPI00513758 SMR:B1APY8 STRING:B1APY8 Ensembl:ENST00000371821
Uniprot:B1APY8
Length = 385
Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
Identities = 70/86 (81%), Positives = 75/86 (87%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 88 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 147
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 148 MTQKELEQLFSQYGRIITSRILVDQV 173
>UNIPROTKB|B1APY9 [details] [associations]
symbol:ELAVL4 "cDNA FLJ50619, highly similar to ELAV-like
protein 4" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
UniGene:Hs.213050 HGNC:HGNC:3315 EMBL:AK298902 IPI:IPI00643012
SMR:B1APY9 STRING:B1APY9 Ensembl:ENST00000371819 UCSC:uc009vyu.3
Uniprot:B1APY9
Length = 371
Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
Identities = 70/86 (81%), Positives = 75/86 (87%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 88 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 147
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 148 MTQKELEQLFSQYGRIITSRILVDQV 173
>UNIPROTKB|P26378 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CH471059
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0003730
eggNOG:COG0724 EMBL:AL645730 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 EMBL:M62843
EMBL:AY033995 EMBL:AY033996 EMBL:AY033997 EMBL:AY033998
EMBL:AK297338 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
EMBL:BC036071 IPI:IPI00395507 IPI:IPI00479625 IPI:IPI00607677
IPI:IPI00644588 IPI:IPI00978372 PIR:A40348 RefSeq:NP_001138246.1
RefSeq:NP_001138247.1 RefSeq:NP_001138248.1 RefSeq:NP_001138249.1
RefSeq:NP_068771.2 UniGene:Hs.213050 PDB:1FXL PDB:1G2E PDBsum:1FXL
PDBsum:1G2E ProteinModelPortal:P26378 SMR:P26378 IntAct:P26378
MINT:MINT-1471928 STRING:P26378 PhosphoSite:P26378 DMDM:223590202
PaxDb:P26378 PRIDE:P26378 Ensembl:ENST00000357083
Ensembl:ENST00000371823 Ensembl:ENST00000371824
Ensembl:ENST00000371827 Ensembl:ENST00000448907 GeneID:1996
KEGG:hsa:1996 UCSC:uc001crz.3 UCSC:uc001csa.3 UCSC:uc001csb.2
UCSC:uc001csc.3 CTD:1996 GeneCards:GC01P050513 HGNC:HGNC:3315
HPA:CAB004442 MIM:168360 neXtProt:NX_P26378 PharmGKB:PA27743
EvolutionaryTrace:P26378 GenomeRNAi:1996 NextBio:8073
ArrayExpress:P26378 Bgee:P26378 CleanEx:HS_ELAVL4
Genevestigator:P26378 GermOnline:ENSG00000162374 Uniprot:P26378
Length = 380
Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
Identities = 70/86 (81%), Positives = 75/86 (87%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 83 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 142
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 143 MTQKELEQLFSQYGRIITSRILVDQV 168
>UNIPROTKB|Q12926 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding"
evidence=TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:CH471071 GO:GO:0003730 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
EMBL:U12431 EMBL:U29943 EMBL:AB209294 EMBL:AL161628 EMBL:AL445623
EMBL:BC030692 IPI:IPI00030250 IPI:IPI00219967 PIR:I38726 PIR:I39077
RefSeq:NP_001164666.1 RefSeq:NP_001164668.1 RefSeq:NP_004423.2
UniGene:Hs.166109 ProteinModelPortal:Q12926 SMR:Q12926
STRING:Q12926 PhosphoSite:Q12926 DMDM:93141258 PaxDb:Q12926
PRIDE:Q12926 DNASU:1993 Ensembl:ENST00000223951
Ensembl:ENST00000380110 Ensembl:ENST00000380117
Ensembl:ENST00000397312 Ensembl:ENST00000544538 GeneID:1993
KEGG:hsa:1993 UCSC:uc003zps.3 UCSC:uc003zpu.3 CTD:1993
GeneCards:GC09M023690 HGNC:HGNC:3313 HPA:CAB022222 MIM:601673
neXtProt:NX_Q12926 PharmGKB:PA27741 InParanoid:Q12926 KO:K13208
OrthoDB:EOG4JHCFV PhylomeDB:Q12926 GenomeRNAi:1993 NextBio:8059
ArrayExpress:Q12926 Bgee:Q12926 CleanEx:HS_ELAVL2
Genevestigator:Q12926 GermOnline:ENSG00000107105 Uniprot:Q12926
Length = 359
Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
Identities = 70/86 (81%), Positives = 75/86 (87%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 76 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 135
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 136 MTQKELEQLFSQYGRIITSRILVDQV 161
>MGI|MGI:1100887 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1100887 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 CTD:1993 KO:K13208 EMBL:U29088
IPI:IPI00121676 PIR:JC6057 RefSeq:NP_034616.1 UniGene:Mm.318042
ProteinModelPortal:Q60899 SMR:Q60899 STRING:Q60899
PhosphoSite:Q60899 PaxDb:Q60899 PRIDE:Q60899
Ensembl:ENSMUST00000008633 GeneID:15569 KEGG:mmu:15569
InParanoid:Q60899 NextBio:288546 Bgee:Q60899 Genevestigator:Q60899
GermOnline:ENSMUSG00000008489 Uniprot:Q60899
Length = 360
Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
Identities = 70/86 (81%), Positives = 75/86 (87%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 76 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 135
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 136 MTQKELEQLFSQYGRIITSRILVDQV 161
>MGI|MGI:107427 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 (Hu antigen D)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:107427 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 EMBL:AL627425 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
EMBL:D31953 EMBL:AF041341 IPI:IPI00229977 IPI:IPI00466120
PIR:JC2298 RefSeq:NP_034618.2 UniGene:Mm.3970
ProteinModelPortal:Q61701 SMR:Q61701 STRING:Q61701
PhosphoSite:Q61701 PaxDb:Q61701 PRIDE:Q61701
Ensembl:ENSMUST00000106597 GeneID:15572 KEGG:mmu:15572
InParanoid:A2A9R7 OMA:SNSRNCP NextBio:288560 Bgee:Q61701
Genevestigator:Q61701 GermOnline:ENSMUSG00000028546 Uniprot:Q61701
Length = 385
Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
Identities = 70/86 (81%), Positives = 75/86 (87%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 88 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 147
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 148 MTQKELEQLFSQYGRIITSRILVDQV 173
>RGD|1560027 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO;ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996 OMA:SNSRNCP
EMBL:S83320 IPI:IPI00560167 RefSeq:NP_001071119.1 UniGene:Rn.134702
ProteinModelPortal:O09032 SMR:O09032 STRING:O09032
PhosphoSite:O09032 GeneID:432358 KEGG:rno:432358 UCSC:RGD:1560027
InParanoid:O09032 NextBio:696819 ArrayExpress:O09032
Genevestigator:O09032 GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
Identities = 70/86 (81%), Positives = 75/86 (87%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 76 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 135
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 136 MTQKELEQLFSQYGRIITSRILVDQV 161
>RGD|628611 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
Identities = 70/86 (81%), Positives = 75/86 (87%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 76 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 135
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 136 MTQKELEQLFSQYGRIITSRILVDQV 161
>UNIPROTKB|D4A7H6 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00192584 ProteinModelPortal:D4A7H6
SMR:D4A7H6 Ensembl:ENSRNOT00000009035 ArrayExpress:D4A7H6
Uniprot:D4A7H6
Length = 346
Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
Identities = 70/86 (81%), Positives = 75/86 (87%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 76 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 135
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 136 MTQKELEQLFSQYGRIITSRILVDQV 161
>UNIPROTKB|D4AAT0 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00392493 ProteinModelPortal:D4AAT0
Ensembl:ENSRNOT00000035262 ArrayExpress:D4AAT0 Uniprot:D4AAT0
Length = 351
Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
Identities = 70/86 (81%), Positives = 75/86 (87%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 81 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 140
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 141 MTQKELEQLFSQYGRIITSRILVDQV 166
>UNIPROTKB|F1LRL1 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 TIGRFAMs:TIGR01661 IPI:IPI00763452
Ensembl:ENSRNOT00000064277 ArrayExpress:F1LRL1 Uniprot:F1LRL1
Length = 384
Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
Identities = 70/86 (81%), Positives = 75/86 (87%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 87 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 146
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 147 MTQKELEQLFSQYGRIITSRILVDQV 172
>UNIPROTKB|F1LRX3 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 IPI:IPI00808644
Ensembl:ENSRNOT00000067007 ArrayExpress:F1LRX3 Uniprot:F1LRX3
Length = 380
Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
Identities = 70/86 (81%), Positives = 75/86 (87%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 83 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 142
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 143 MTQKELEQLFSQYGRIITSRILVDQV 168
>UNIPROTKB|O09032 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV
CTD:1996 OMA:SNSRNCP EMBL:S83320 IPI:IPI00560167
RefSeq:NP_001071119.1 UniGene:Rn.134702 ProteinModelPortal:O09032
SMR:O09032 STRING:O09032 PhosphoSite:O09032 GeneID:432358
KEGG:rno:432358 UCSC:RGD:1560027 InParanoid:O09032 NextBio:696819
ArrayExpress:O09032 Genevestigator:O09032
GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
Identities = 70/86 (81%), Positives = 75/86 (87%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 76 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 135
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 136 MTQKELEQLFSQYGRIITSRILVDQV 161
>UNIPROTKB|Q8CH84 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
Identities = 70/86 (81%), Positives = 75/86 (87%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 76 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 135
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 136 MTQKELEQLFSQYGRIITSRILVDQV 161
>ZFIN|ZDB-GENE-990415-246 [details] [associations]
symbol:elavl4 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 4 (Hu antigen D)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-246 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR931780 EMBL:CU467068
EMBL:CU929301 IPI:IPI00920316 ProteinModelPortal:F1R133
Ensembl:ENSDART00000134787 ArrayExpress:F1R133 Bgee:F1R133
Uniprot:F1R133
Length = 408
Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
Identities = 70/86 (81%), Positives = 75/86 (87%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 125 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 184
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 185 MTQKELEQLFSQYGRIITSRILVDQV 210
>UNIPROTKB|F1SNK9 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AEMK01195641
EMBL:CU407236 Ensembl:ENSSSCT00000005656 Uniprot:F1SNK9
Length = 400
Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
Identities = 73/96 (76%), Positives = 80/96 (83%)
Query: 22 DAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGA 81
D+E+ V L QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ A
Sbjct: 107 DSEVIV-LGKGWQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA 165
Query: 82 NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNL 117
NLYVSGLPK M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 166 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQV 201
>UNIPROTKB|Q91903 [details] [associations]
symbol:elavl2 "ELAV-like protein 2" species:8355 "Xenopus
laevis" [GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0007399 "nervous system
development" evidence=IMP] [GO:0008298 "intracellular mRNA
localization" evidence=IMP] [GO:0017131 "uridine-rich cytoplasmic
polyadenylylation element binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA;IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0051260 "protein homooligomerization" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0007399 GO:GO:0000166
GO:GO:0051260 Gene3D:3.30.70.330 GO:GO:0000122 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
HSSP:P26378 KO:K13208 EMBL:X85111 EMBL:U17597 EMBL:BC170539
EMBL:BC094189 PIR:I51676 RefSeq:NP_001081035.1
RefSeq:NP_001081613.1 UniGene:Xl.1648 UniGene:Xl.34955
ProteinModelPortal:Q91903 SMR:Q91903 MINT:MINT-2880431
GeneID:394342 GeneID:397952 KEGG:xla:394342 KEGG:xla:397952
CTD:394342 CTD:397952 Xenbase:XB-GENE-6254447
Xenbase:XB-GENE-866091 GO:GO:0017131 Uniprot:Q91903
Length = 389
Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
Identities = 70/88 (79%), Positives = 76/88 (86%)
Query: 30 ISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLP 89
I+ QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLP
Sbjct: 102 ITEGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLP 161
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNL 117
K M+Q+ELE LFS YGRIITSRIL D +
Sbjct: 162 KTMTQKELEQLFSQYGRIITSRILVDQV 189
>ZFIN|ZDB-GENE-040704-9 [details] [associations]
symbol:elavl2 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 2 (Hu antigen B)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040704-9 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OrthoDB:EOG4JHCFV EMBL:AL954145
IPI:IPI00482002 UniGene:Dr.84858 SMR:Q1MT19
Ensembl:ENSDART00000139420 InParanoid:Q1MT19 Uniprot:Q1MT19
Length = 388
Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
Identities = 69/86 (80%), Positives = 75/86 (87%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 105 TGQSLGYGFVNYMEPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 164
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+Q+ELE LFS +GRIITSRIL D +
Sbjct: 165 MTQKELEQLFSQFGRIITSRILVDQV 190
>UNIPROTKB|F1N4V6 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:DAAA02019487
IPI:IPI00710891 Ensembl:ENSBTAT00000019169 Uniprot:F1N4V6
Length = 368
Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
Identities = 71/98 (72%), Positives = 78/98 (79%)
Query: 22 DAEICVFLIS--TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIK 79
D E C + T QSLGYGFVNY P DA+KAINTLNGL+LQ KTIKVSYARPSS SI+
Sbjct: 64 DIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIR 123
Query: 80 GANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNL 117
ANLYVSGLPK MSQ+E+E LFS YGRIITSRIL D +
Sbjct: 124 DANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQV 161
>UNIPROTKB|F1PVV1 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:AAEX03012413
Ensembl:ENSCAFT00000027494 Uniprot:F1PVV1
Length = 367
Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
Identities = 71/98 (72%), Positives = 78/98 (79%)
Query: 22 DAEICVFLIS--TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIK 79
D E C + T QSLGYGFVNY P DA+KAINTLNGL+LQ KTIKVSYARPSS SI+
Sbjct: 64 DIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIR 123
Query: 80 GANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNL 117
ANLYVSGLPK MSQ+E+E LFS YGRIITSRIL D +
Sbjct: 124 DANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQV 161
>UNIPROTKB|Q14576 [details] [associations]
symbol:ELAVL3 "ELAV-like protein 3" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007399
"nervous system development" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0007399 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
KO:K13208 EMBL:L26405 EMBL:AY036909 EMBL:AC008481 EMBL:BC014144
EMBL:D26158 IPI:IPI00031552 IPI:IPI00140449 RefSeq:NP_001411.2
RefSeq:NP_115657.2 UniGene:Hs.1701 ProteinModelPortal:Q14576
SMR:Q14576 IntAct:Q14576 MINT:MINT-1471958 STRING:Q14576
PhosphoSite:Q14576 DMDM:21264436 PaxDb:Q14576 PRIDE:Q14576
Ensembl:ENST00000359227 Ensembl:ENST00000438662 GeneID:1995
KEGG:hsa:1995 UCSC:uc002mrx.1 UCSC:uc002mry.1 CTD:1995
GeneCards:GC19M011562 HGNC:HGNC:3314 HPA:CAB013066 MIM:603458
neXtProt:NX_Q14576 PharmGKB:PA27742 InParanoid:Q14576 OMA:ARRYTGP
PhylomeDB:Q14576 ChiTaRS:ELAVL3 GenomeRNAi:1995 NextBio:8067
ArrayExpress:Q14576 Bgee:Q14576 CleanEx:HS_ELAVL3
Genevestigator:Q14576 GermOnline:ENSG00000196361 Uniprot:Q14576
Length = 367
Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
Identities = 71/98 (72%), Positives = 78/98 (79%)
Query: 22 DAEICVFLIS--TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIK 79
D E C + T QSLGYGFVNY P DA+KAINTLNGL+LQ KTIKVSYARPSS SI+
Sbjct: 64 DIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIR 123
Query: 80 GANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNL 117
ANLYVSGLPK MSQ+E+E LFS YGRIITSRIL D +
Sbjct: 124 DANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQV 161
>UNIPROTKB|F1SA16 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:CU855518
Ensembl:ENSSSCT00000014872 Uniprot:F1SA16
Length = 367
Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
Identities = 71/98 (72%), Positives = 78/98 (79%)
Query: 22 DAEICVFLIS--TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIK 79
D E C + T QSLGYGFVNY P DA+KAINTLNGL+LQ KTIKVSYARPSS SI+
Sbjct: 64 DIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIR 123
Query: 80 GANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNL 117
ANLYVSGLPK MSQ+E+E LFS YGRIITSRIL D +
Sbjct: 124 DANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQV 161
>MGI|MGI:109157 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007399 "nervous system development" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=ISO;IDA] [GO:0030154 "cell
differentiation" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109157 GO:GO:0007399 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OMA:ARRYTGP
ChiTaRS:ELAVL3 EMBL:U29148 EMBL:U29149 EMBL:BC052097
IPI:IPI00122451 IPI:IPI00222990 RefSeq:NP_034617.1
UniGene:Mm.390167 PDB:1D8Z PDB:1D9A PDB:1FNX PDBsum:1D8Z
PDBsum:1D9A PDBsum:1FNX ProteinModelPortal:Q60900 SMR:Q60900
STRING:Q60900 PhosphoSite:Q60900 PaxDb:Q60900 PRIDE:Q60900
Ensembl:ENSMUST00000003501 GeneID:15571 KEGG:mmu:15571
UCSC:uc009onl.2 UCSC:uc009onn.1 InParanoid:Q60900 OrthoDB:EOG43R3N0
EvolutionaryTrace:Q60900 NextBio:288556 Bgee:Q60900
Genevestigator:Q60900 GermOnline:ENSMUSG00000003410 Uniprot:Q60900
Length = 367
Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
Identities = 71/96 (73%), Positives = 77/96 (80%)
Query: 22 DAEICVFLIS--TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIK 79
D E C + T QSLGYGFVNY P DA+KAINTLNGL+LQ KTIKVSYARPSS SI+
Sbjct: 64 DIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIR 123
Query: 80 GANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
ANLYVSGLPK MSQ+E+E LFS YGRIITSRIL D
Sbjct: 124 DANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLD 159
>RGD|628892 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:628892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 HSSP:P19339 eggNOG:COG0724 EMBL:CH473993
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OrthoDB:EOG43R3N0
EMBL:AB097198 IPI:IPI00192527 RefSeq:NP_758827.1 UniGene:Rn.22586
SMR:Q76IJ9 STRING:Q76IJ9 Ensembl:ENSRNOT00000018416 GeneID:282824
KEGG:rno:282824 UCSC:RGD:628892 InParanoid:Q76IJ9 NextBio:624869
Genevestigator:Q76IJ9 Uniprot:Q76IJ9
Length = 367
Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
Identities = 71/96 (73%), Positives = 77/96 (80%)
Query: 22 DAEICVFLIS--TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIK 79
D E C + T QSLGYGFVNY P DA+KAINTLNGL+LQ KTIKVSYARPSS SI+
Sbjct: 64 DIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIR 123
Query: 80 GANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
ANLYVSGLPK MSQ+E+E LFS YGRIITSRIL D
Sbjct: 124 DANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLD 159
>ZFIN|ZDB-GENE-980526-76 [details] [associations]
symbol:elavl3 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 3 (Hu antigen C)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-980526-76 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP OrthoDB:EOG43R3N0
EMBL:CR385086 EMBL:BC065343 IPI:IPI00512421 UniGene:Dr.75060
SMR:Q6P105 STRING:Q6P105 Ensembl:ENSDART00000028610
InParanoid:Q6P105 Uniprot:Q6P105
Length = 359
Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
Identities = 67/86 (77%), Positives = 74/86 (86%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY P DA+KAINTLNGL+LQ KTIKVSYARPSS SI+ ANLYVSGLPK
Sbjct: 75 TGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKT 134
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
MSQ+++E LFS YGRIITSRIL D +
Sbjct: 135 MSQKDMEQLFSQYGRIITSRILVDQV 160
>WB|WBGene00001368 [details] [associations]
symbol:exc-7 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0002064 "epithelial cell development"
evidence=IMP] [GO:0035150 "regulation of tube size" evidence=IMP]
[GO:0016607 "nuclear speck" evidence=IDA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0002064 eggNOG:COG0724 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 HSSP:P26378 GeneTree:ENSGT00560000077064
OMA:DIGESKT GO:GO:0035150 EMBL:Z36752 PIR:T21822 RefSeq:NP_496057.1
ProteinModelPortal:Q20084 SMR:Q20084 DIP:DIP-27011N IntAct:Q20084
MINT:MINT-1038844 STRING:Q20084 PaxDb:Q20084 EnsemblMetazoa:F35H8.5
GeneID:174506 KEGG:cel:CELE_F35H8.5 CTD:174506 WormBase:F35H8.5
InParanoid:Q20084 NextBio:884320 Uniprot:Q20084
Length = 456
Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
Identities = 62/86 (72%), Positives = 75/86 (87%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T QSLGYGFVNY R EDA +A+++ NGLRLQNKTIKVSYARPS++ IKG+NLYVSG+PK
Sbjct: 79 TGQSLGYGFVNYVREEDALRAVSSFNGLRLQNKTIKVSYARPSNDQIKGSNLYVSGIPKS 138
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
M+ ELES+F P+G+IITSRIL DN+
Sbjct: 139 MTLHELESIFRPFGQIITSRILSDNV 164
>ZFIN|ZDB-GENE-000210-17 [details] [associations]
symbol:hug "HuG" species:7955 "Danio rerio"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-000210-17 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR550302 IPI:IPI00998450
ProteinModelPortal:F1QUX1 Ensembl:ENSDART00000122728
ArrayExpress:F1QUX1 Bgee:F1QUX1 Uniprot:F1QUX1
Length = 368
Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
Identities = 61/81 (75%), Positives = 70/81 (86%)
Query: 35 SLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQ 94
SLGYGFVNY P DAE+AINTLNGLRLQ+KTIKVSYARPSS+ IK ANLY+SGLPK M+Q
Sbjct: 104 SLGYGFVNYVNPSDAERAINTLNGLRLQSKTIKVSYARPSSDGIKDANLYISGLPKTMTQ 163
Query: 95 QELESLFSPYGRIITSRILCD 115
+ +E +F+ YGRII SRIL D
Sbjct: 164 KNVEDMFTQYGRIINSRILVD 184
>UNIPROTKB|D3K5N7 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1" species:9823 "Sus scrofa" [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0019901
"protein kinase binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727
GO:GO:0070935 CTD:1994 KO:K13088 OrthoDB:EOG4Z8XWZ
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:CU929699 EMBL:GU373715 RefSeq:NP_001182263.1 UniGene:Ssc.4516
ProteinModelPortal:D3K5N7 Ensembl:ENSSSCT00000014844
GeneID:100337681 KEGG:ssc:100337681 Uniprot:D3K5N7
Length = 326
Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
Identities = 60/81 (74%), Positives = 72/81 (88%)
Query: 35 SLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQ 94
SLGYGFVNY +DAE+AINTLNGLRLQ+KTIKVSYARPSSE IK ANLY+SGLP+ M+Q
Sbjct: 60 SLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQ 119
Query: 95 QELESLFSPYGRIITSRILCD 115
+++E +FSP+GRII SR+L D
Sbjct: 120 KDVEDMFSPFGRIINSRVLVD 140
>ZFIN|ZDB-GENE-990415-245 [details] [associations]
symbol:elavl1 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 1 (Hu antigen R)" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-245 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:BX649372 IPI:IPI00817195
PRIDE:F1QM02 Ensembl:ENSDART00000146123 ArrayExpress:F1QM02
Bgee:F1QM02 Uniprot:F1QM02
Length = 340
Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
Identities = 60/81 (74%), Positives = 71/81 (87%)
Query: 35 SLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQ 94
SLGYGFVNY P DAE+AI+TLNGLRLQ+KTIKVSYARPSS+SIK ANLY+SGLPK M+Q
Sbjct: 74 SLGYGFVNYLNPNDAERAISTLNGLRLQSKTIKVSYARPSSDSIKDANLYISGLPKTMTQ 133
Query: 95 QELESLFSPYGRIITSRILCD 115
+++E +F YGRII SR+L D
Sbjct: 134 KDVEEMFGRYGRIINSRVLVD 154
>UNIPROTKB|Q1JQ73 [details] [associations]
symbol:elavl1-a "ELAV-like protein 1-A" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005938
"cell cortex" evidence=IDA] [GO:0007369 "gastrulation"
evidence=IMP] [GO:0008266 "poly(U) RNA binding" evidence=IDA]
[GO:0008298 "intracellular mRNA localization" evidence=IMP]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA;IPI]
[GO:0031440 "regulation of mRNA 3'-end processing" evidence=IC]
[GO:0048255 "mRNA stabilization" evidence=IC;IGI] [GO:0051259
"protein oligomerization" evidence=IDA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
KO:K13208 EMBL:U17596 EMBL:BC116459 PIR:I51675
RefSeq:NP_001084078.1 UniGene:Xl.49136 ProteinModelPortal:Q1JQ73
SMR:Q1JQ73 MINT:MINT-274235 PRIDE:Q1JQ73 GeneID:399292
KEGG:xla:399292 CTD:399292 Xenbase:XB-GENE-6254178 GO:GO:0031440
Uniprot:Q1JQ73
Length = 337
Score = 310 (114.2 bits), Expect = 1.0e-27, P = 1.0e-27
Identities = 59/86 (68%), Positives = 73/86 (84%)
Query: 30 ISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLP 89
+S SLGYGFVNY +DAE+AINTLNGLRLQ+KTIKVS+ARPSSESIK ANLY+SGLP
Sbjct: 66 LSKGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSFARPSSESIKDANLYISGLP 125
Query: 90 KHMSQQELESLFSPYGRIITSRILCD 115
+ M+Q+++E +F P+G II SR+L D
Sbjct: 126 RTMTQKDVEDMFLPFGHIINSRVLVD 151
>UNIPROTKB|Q3ZCE2 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:9913 "Bos taurus"
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0045727 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064
OMA:RFGGPLH EMBL:DAAA02019508 EMBL:DAAA02019509 EMBL:BC102495
IPI:IPI00703347 RefSeq:NP_001069922.1 UniGene:Bt.49576 SMR:Q3ZCE2
STRING:Q3ZCE2 Ensembl:ENSBTAT00000000805 GeneID:617316
KEGG:bta:617316 InParanoid:Q3ZCE2 NextBio:20900599 Uniprot:Q3ZCE2
Length = 326
Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
Identities = 59/81 (72%), Positives = 72/81 (88%)
Query: 35 SLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQ 94
SLGYGFVNY +DAE+AINTLNGLRLQ+KTIKVSYARPSSE IK ANLY+SGLP++M+Q
Sbjct: 60 SLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRNMTQ 119
Query: 95 QELESLFSPYGRIITSRILCD 115
+++E +FS +GRII SR+L D
Sbjct: 120 KDVEDMFSRFGRIINSRVLVD 140
>UNIPROTKB|Q6GLB5 [details] [associations]
symbol:elavl1 "ELAV-like protein 1" species:8364 "Xenopus
(Silurana) tropicalis" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0005938 "cell cortex" evidence=ISS]
[GO:0007369 "gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA
binding" evidence=ISS] [GO:0008298 "intracellular mRNA
localization" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0051259 "protein oligomerization" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0005634 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 GO:GO:0007369 eggNOG:COG0724
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:BC074585
RefSeq:NP_001005461.1 UniGene:Str.2596 ProteinModelPortal:Q6GLB5
SMR:Q6GLB5 STRING:Q6GLB5 PRIDE:Q6GLB5 GeneID:448062 KEGG:xtr:448062
Xenbase:XB-GENE-481800 InParanoid:Q6GLB5 Uniprot:Q6GLB5
Length = 326
Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
Identities = 59/81 (72%), Positives = 71/81 (87%)
Query: 35 SLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQ 94
SLGYGFVNY +DAE+AINTLNGLRLQ+KTIKVS ARPSSESIK ANLY+SGLP+ M+Q
Sbjct: 60 SLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSVARPSSESIKDANLYISGLPRTMTQ 119
Query: 95 QELESLFSPYGRIITSRILCD 115
+++E +F P+GRII SR+L D
Sbjct: 120 KDVEDMFLPFGRIINSRVLVD 140
>UNIPROTKB|F1N9I5 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727 GO:GO:0070935
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:AADN02063542 IPI:IPI00590347 ProteinModelPortal:F1N9I5
Ensembl:ENSGALT00000001029 Uniprot:F1N9I5
Length = 326
Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
Identities = 59/81 (72%), Positives = 71/81 (87%)
Query: 35 SLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQ 94
SLGYGFVNY +DAE+AINTLNGLRLQ+KTIKVSYARPSSE IK ANLY+SGLP+ M+Q
Sbjct: 60 SLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRSMTQ 119
Query: 95 QELESLFSPYGRIITSRILCD 115
+++E +FS +GRII SR+L D
Sbjct: 120 KDVEDMFSRFGRIINSRVLVD 140
>UNIPROTKB|F1PSC4 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:AAEX03012469
Ensembl:ENSCAFT00000029161 Uniprot:F1PSC4
Length = 334
Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
Identities = 59/81 (72%), Positives = 71/81 (87%)
Query: 35 SLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQ 94
SLGYGFVNY +DAE+AINTLNGLRLQ+KTIKVSYARPSSE IK ANLY+SGLP+ M+Q
Sbjct: 68 SLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQ 127
Query: 95 QELESLFSPYGRIITSRILCD 115
+++E +FS +GRII SR+L D
Sbjct: 128 KDVEDMFSRFGRIINSRVLVD 148
>UNIPROTKB|B4DVB8 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 UniGene:Hs.184492
UniGene:Hs.713744 HGNC:HGNC:3312 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AC010336 EMBL:AC008975 EMBL:AK301013
IPI:IPI00301936 ProteinModelPortal:B4DVB8 SMR:B4DVB8 IntAct:B4DVB8
STRING:B4DVB8 PRIDE:B4DVB8 Ensembl:ENST00000351593 OMA:RFGGPLH
ArrayExpress:B4DVB8 Bgee:B4DVB8 Uniprot:B4DVB8
Length = 353
Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
Identities = 59/81 (72%), Positives = 71/81 (87%)
Query: 35 SLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQ 94
SLGYGFVNY +DAE+AINTLNGLRLQ+KTIKVSYARPSSE IK ANLY+SGLP+ M+Q
Sbjct: 87 SLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQ 146
Query: 95 QELESLFSPYGRIITSRILCD 115
+++E +FS +GRII SR+L D
Sbjct: 147 KDVEDMFSRFGRIINSRVLVD 167
>UNIPROTKB|Q15717 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IDA;IMP] [GO:0048255
"mRNA stabilization" evidence=IDA;IMP] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0019901 "protein kinase binding" evidence=IPI] [GO:0035925
"mRNA 3'-UTR AU-rich region binding" evidence=IDA] [GO:0045727
"positive regulation of translation" evidence=IDA] [GO:0003729
"mRNA binding" evidence=TAS] [GO:0007275 "multicellular organismal
development" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0007275 GO:GO:0005829 GO:GO:0010467 GO:GO:0016071
GO:GO:0005654 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0017091 EMBL:CH471139 GO:GO:0045727 eggNOG:COG0724
GO:GO:0070935 HOVERGEN:HBG002295 EMBL:U38175 EMBL:BT009793
EMBL:BC003376 IPI:IPI00940851 RefSeq:NP_001410.2 UniGene:Hs.184492
UniGene:Hs.713744 PDB:3HI9 PDB:4ED5 PDB:4EGL PDB:4FXV PDBsum:3HI9
PDBsum:4ED5 PDBsum:4EGL PDBsum:4FXV ProteinModelPortal:Q15717
SMR:Q15717 IntAct:Q15717 MINT:MINT-5001300 STRING:Q15717
PhosphoSite:Q15717 DMDM:20981691 PaxDb:Q15717 PeptideAtlas:Q15717
PRIDE:Q15717 DNASU:1994 Ensembl:ENST00000407627 GeneID:1994
KEGG:hsa:1994 UCSC:uc002mjb.3 CTD:1994 GeneCards:GC19M008023
HGNC:HGNC:3312 HPA:CAB005256 MIM:603466 neXtProt:NX_Q15717
PharmGKB:PA27740 HOGENOM:HOG000231162 InParanoid:Q15717 KO:K13088
OrthoDB:EOG4Z8XWZ PhylomeDB:Q15717 BindingDB:Q15717
ChEMBL:CHEMBL1250379 EvolutionaryTrace:Q15717 GenomeRNAi:1994
NextBio:8063 ArrayExpress:Q15717 Bgee:Q15717 CleanEx:HS_ELAVL1
Genevestigator:Q15717 GermOnline:ENSG00000066044 TIGRFAMs:TIGR01661
Uniprot:Q15717
Length = 326
Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
Identities = 59/81 (72%), Positives = 71/81 (87%)
Query: 35 SLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQ 94
SLGYGFVNY +DAE+AINTLNGLRLQ+KTIKVSYARPSSE IK ANLY+SGLP+ M+Q
Sbjct: 60 SLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQ 119
Query: 95 QELESLFSPYGRIITSRILCD 115
+++E +FS +GRII SR+L D
Sbjct: 120 KDVEDMFSRFGRIINSRVLVD 140
>UNIPROTKB|Q5U259 [details] [associations]
symbol:elavl1-b "ELAV-like protein 1-B" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005938 "cell cortex" evidence=IDA] [GO:0007369
"gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA binding"
evidence=ISS] [GO:0008298 "intracellular mRNA localization"
evidence=IMP] [GO:0030529 "ribonucleoprotein complex" evidence=IPI]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0051259 "protein
oligomerization" evidence=ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 KO:K13088
TIGRFAMs:TIGR01661 EMBL:BC086269 RefSeq:NP_001088628.1
UniGene:Xl.22886 ProteinModelPortal:Q5U259 SMR:Q5U259 PRIDE:Q5U259
GeneID:495680 KEGG:xla:495680 CTD:495680 Xenbase:XB-GENE-865489
Uniprot:Q5U259
Length = 326
Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
Identities = 57/81 (70%), Positives = 71/81 (87%)
Query: 35 SLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQ 94
SLGYGFVNY +DAE+AINTLNGLRLQ+KTIKVS+ARPSSE+IK ANLY+SGLP+ M+Q
Sbjct: 60 SLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSFARPSSETIKDANLYISGLPRTMTQ 119
Query: 95 QELESLFSPYGRIITSRILCD 115
+++E +F P+G II SR+L D
Sbjct: 120 KDVEDMFLPFGHIINSRVLVD 140
>MGI|MGI:1100851 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision)-like
1 (Hu antigen R)" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006417 "regulation of translation" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0019901 "protein kinase
binding" evidence=ISO] [GO:0035925 "mRNA 3'-UTR AU-rich region
binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=ISO;IMP;IDA] [GO:0048255 "mRNA stabilization"
evidence=ISO;IMP] [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=ISO] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1100851 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
GO:GO:0045727 EMBL:CH466566 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:U65735 EMBL:AK080365
EMBL:U17595 IPI:IPI00108271 PIR:I49144 RefSeq:NP_034615.2
UniGene:Mm.119162 HSSP:P26378 ProteinModelPortal:P70372 SMR:P70372
DIP:DIP-46480N MINT:MINT-4094207 STRING:P70372 PhosphoSite:P70372
PaxDb:P70372 PRIDE:P70372 Ensembl:ENSMUST00000098950 GeneID:15568
KEGG:mmu:15568 GeneTree:ENSGT00560000077064 InParanoid:P70372
OMA:YANRACA ChiTaRS:ELAVL1 NextBio:288542 Bgee:P70372
Genevestigator:P70372 GermOnline:ENSMUSG00000040028 Uniprot:P70372
Length = 326
Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
Identities = 58/81 (71%), Positives = 71/81 (87%)
Query: 35 SLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQ 94
SLGYGFVNY +DAE+AI+TLNGLRLQ+KTIKVSYARPSSE IK ANLY+SGLP+ M+Q
Sbjct: 60 SLGYGFVNYVTAKDAERAISTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQ 119
Query: 95 QELESLFSPYGRIITSRILCD 115
+++E +FS +GRII SR+L D
Sbjct: 120 KDVEDMFSRFGRIINSRVLVD 140
>RGD|1308649 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006417 "regulation of
translation" evidence=ISO] [GO:0017091 "AU-rich element binding"
evidence=ISO] [GO:0019901 "protein kinase binding" evidence=ISO]
[GO:0035925 "mRNA 3'-UTR AU-rich region binding" evidence=ISO]
[GO:0045727 "positive regulation of translation" evidence=IEA;ISO]
[GO:0048255 "mRNA stabilization" evidence=ISO] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1308649 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 eggNOG:COG0724 HOVERGEN:HBG002295 CTD:1994
HOGENOM:HOG000231162 KO:K13088 OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:CH474084
EMBL:BC168972 EMBL:AB212679 IPI:IPI00869767 RefSeq:NP_001102318.1
UniGene:Rn.216517 SMR:B5DF91 STRING:B5DF91
Ensembl:ENSRNOT00000001415 GeneID:363854 KEGG:rno:363854
UCSC:RGD:1308649 NextBio:684342 Genevestigator:B5DF91
Uniprot:B5DF91
Length = 326
Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
Identities = 58/81 (71%), Positives = 71/81 (87%)
Query: 35 SLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQ 94
SLGYGFVNY +DAE+AI+TLNGLRLQ+KTIKVSYARPSSE IK ANLY+SGLP+ M+Q
Sbjct: 60 SLGYGFVNYVTAKDAERAISTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQ 119
Query: 95 QELESLFSPYGRIITSRILCD 115
+++E +FS +GRII SR+L D
Sbjct: 120 KDVEDMFSRFGRIINSRVLVD 140
>FB|FBgn0264270 [details] [associations]
symbol:Sxl "Sex lethal" species:7227 "Drosophila
melanogaster" [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=NAS;TAS] [GO:0019099 "female germ-line sex
determination" evidence=TAS] [GO:0007549 "dosage compensation"
evidence=NAS;TAS] [GO:0019101 "female somatic sex determination"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008187 "poly-pyrimidine tract binding" evidence=IDA]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=TAS] [GO:0007541 "sex determination, primary response to
X:A ratio" evidence=NAS;TAS] [GO:0048477 "oogenesis" evidence=TAS]
[GO:0030237 "female sex determination" evidence=NAS] [GO:0007131
"reciprocal meiotic recombination" evidence=TAS] [GO:0018993
"somatic sex determination" evidence=NAS;TAS] [GO:0003729 "mRNA
binding" evidence=ISS;TAS] [GO:0007530 "sex determination"
evidence=NAS;TAS] [GO:0008266 "poly(U) RNA binding" evidence=IDA]
[GO:0007281 "germ cell development" evidence=TAS] [GO:0007548 "sex
differentiation" evidence=NAS;TAS] [GO:0017148 "negative regulation
of translation" evidence=IMP;IDA;NAS;TAS] [GO:0048027 "mRNA 5'-UTR
binding" evidence=IDA;TAS] [GO:0000900 "translation repressor
activity, nucleic acid binding" evidence=TAS] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=TAS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=TAS] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0007224 "smoothened signaling pathway"
evidence=IDA] [GO:0008083 "growth factor activity" evidence=IDA]
[GO:0007446 "imaginal disc growth" evidence=IMP] [GO:0009994
"oocyte differentiation" evidence=IDA] [GO:0043234 "protein
complex" evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006546
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0043234 GO:GO:0008266
GO:GO:0006355 GO:GO:0000166 EMBL:AE014298 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0048027 GO:GO:0003730 GO:GO:0007281
GO:GO:0008083 GO:GO:0007548 GO:GO:0007224 GO:GO:0007131
GO:GO:0009994 GO:GO:0000900 GO:GO:0048025 GO:GO:0019099
GO:GO:0000380 GO:GO:0007541 GO:GO:0007446 GO:GO:0007549
GO:GO:0019101 GeneTree:ENSGT00560000077064 EMBL:M23635 EMBL:M23636
EMBL:M59447 EMBL:M59448 EMBL:BT003583 EMBL:BT099922 EMBL:BT100240
EMBL:BT120392 EMBL:S88324 EMBL:D84425 PIR:A31639 PIR:A39725
RefSeq:NP_001027062.1 RefSeq:NP_001027063.1 RefSeq:NP_001027064.1
RefSeq:NP_001027065.1 RefSeq:NP_001027066.1 RefSeq:NP_001162686.1
RefSeq:NP_001162687.1 RefSeq:NP_001162688.1 RefSeq:NP_001162689.1
RefSeq:NP_001162690.1 RefSeq:NP_001162691.1 RefSeq:NP_001245559.1
RefSeq:NP_524791.3 RefSeq:NP_727160.2 RefSeq:NP_727161.2
RefSeq:NP_727162.2 RefSeq:NP_727163.2 RefSeq:NP_727164.2
RefSeq:NP_727165.2 RefSeq:NP_727166.2 RefSeq:NP_727167.2
RefSeq:NP_727168.1 UniGene:Dm.4502 PDB:1B7F PDB:1SXL PDB:2SXL
PDB:3SXL PDBsum:1B7F PDBsum:1SXL PDBsum:2SXL PDBsum:3SXL
ProteinModelPortal:P19339 SMR:P19339 IntAct:P19339 MINT:MINT-276991
STRING:P19339 PaxDb:P19339 PRIDE:P19339 EnsemblMetazoa:FBtr0331255
EnsemblMetazoa:FBtr0331262 EnsemblMetazoa:FBtr0331268
GeneID:3772180 KEGG:dme:Dmel_CG18350 CTD:3772180
FlyBase:FBgn0003659 eggNOG:NOG249299 InParanoid:P19339 OMA:HRDGAME
OrthoDB:EOG4F4QSS EvolutionaryTrace:P19339 NextBio:852740
Bgee:P19339 GermOnline:CG18350 TIGRFAMs:TIGR01659 Uniprot:P19339
Length = 354
Score = 216 (81.1 bits), Expect = 1.7e-17, P = 1.7e-17
Identities = 40/86 (46%), Positives = 58/86 (67%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T S GY FV++ D+++AI LNG+ ++NK +KVSYARP ESIK NLYV+ LP+
Sbjct: 162 TGYSFGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRT 221
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
++ +L+++F YG I+ IL D L
Sbjct: 222 ITDDQLDTIFGKYGSIVQKNILRDKL 247
>FB|FBgn0024987 [details] [associations]
symbol:ssx "sister-of-Sex-lethal" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0042742 "defense response to bacterium"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:AE014298 GO:GO:0042742
GO:GO:0003729 Gene3D:3.30.70.330 HSSP:P19339 EMBL:AL023893
SMR:O76876 IntAct:O76876 MINT:MINT-315293 STRING:O76876
UCSC:CG3056-RA FlyBase:FBgn0024987 eggNOG:NOG321849
InParanoid:O76876 OrthoDB:EOG4M37RG NextBio:771866 Uniprot:O76876
Length = 485
Score = 218 (81.8 bits), Expect = 3.3e-17, P = 3.3e-17
Identities = 43/86 (50%), Positives = 56/86 (65%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T S GYGFV+Y D+E AI LNG ++NK +KVSYARP +SIK NLYV L ++
Sbjct: 130 TGYSFGYGFVDYKTESDSEDAIQKLNGFYVRNKRLKVSYARPGGQSIKDTNLYVINLSRN 189
Query: 92 MSQQELESLFSPYGRIITSRILCDNL 117
++ L+ +FSPYG I+ IL D L
Sbjct: 190 INDDMLDRIFSPYGLIVQRNILRDKL 215
>DICTYBASE|DDB_G0292472 [details] [associations]
symbol:DDB_G0292472 species:44689 "Dictyostelium
discoideum" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0292472 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000190 eggNOG:NOG321849 RefSeq:XP_629639.1
ProteinModelPortal:Q54D57 EnsemblProtists:DDB0184418 GeneID:8628703
KEGG:ddi:DDB_G0292472 InParanoid:Q54D57 OMA:ANINFAF Uniprot:Q54D57
Length = 550
Score = 178 (67.7 bits), Expect = 9.4e-13, P = 9.4e-13
Identities = 34/81 (41%), Positives = 52/81 (64%)
Query: 35 SLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQ 94
SLGYGFV + + ++A AI LNG + +K +KVSYA+ SS ANLY++ L H++
Sbjct: 151 SLGYGFVKFSKKDEAAMAIEQLNGFEVDSKPLKVSYAQASSSQSTHANLYINRLEPHVTN 210
Query: 95 QELESLFSPYGRIITSRILCD 115
L+ +F +G +I ++IL D
Sbjct: 211 ANLKEVFGSFGDVIDTKILTD 231
>DICTYBASE|DDB_G0290307 [details] [associations]
symbol:DDB_G0290307 "ELAVL1-like protein"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0290307 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000162 eggNOG:NOG256997 RefSeq:XP_635793.1
ProteinModelPortal:Q54G90 EnsemblProtists:DDB0233651 GeneID:8627598
KEGG:ddi:DDB_G0290307 InParanoid:Q54G90 OMA:SATNQCK Uniprot:Q54G90
Length = 459
Score = 109 (43.4 bits), Expect = 4.9e-12, Sum P(2) = 4.9e-12
Identities = 23/75 (30%), Positives = 42/75 (56%)
Query: 12 TYEKVHLGFSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVS 69
T + F + + C ++ +T S G+GFV + A+ AIN++NG +++NKT+ V
Sbjct: 114 TLRSIFSAFGEIDSCRVMVDLNTGLSRGFGFVKFKDVASAQYAINSMNGAKVENKTLLVR 173
Query: 70 YAR--PSSESIKGAN 82
+A P+S + +N
Sbjct: 174 FANSDPNSNNTNNSN 188
Score = 84 (34.6 bits), Expect = 4.9e-12, Sum P(2) = 4.9e-12
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 82 NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGL 128
N+++ GLP + +L LFS YG ++ S++L D T N GL
Sbjct: 220 NVFIRGLPIEFDKNQLSELFSAYGEVVESKLLID--ITTNASRGQGL 264
>UNIPROTKB|F1SLB3 [details] [associations]
symbol:RBMS2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GeneTree:ENSGT00630000089747 EMBL:CU633731
EMBL:CU655980 Ensembl:ENSSSCT00000000434 OMA:GHQMAPP
ArrayExpress:F1SLB3 Uniprot:F1SLB3
Length = 281
Score = 158 (60.7 bits), Expect = 2.6e-11, P = 2.6e-11
Identities = 35/103 (33%), Positives = 56/103 (54%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA+ L +Q + K P+ NLY+S LP
Sbjct: 62 TTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQQEQDPT-------NLYISNLPL 114
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE + P+G++I++RIL D T G ++ + E+
Sbjct: 115 SMDEQELEGMLKPFGQVISTRILRDTSGTSRGVGFARMESTEK 157
>UNIPROTKB|E5RGH3 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00983093
ProteinModelPortal:E5RGH3 SMR:E5RGH3 Ensembl:ENST00000518196
ArrayExpress:E5RGH3 Bgee:E5RGH3 Uniprot:E5RGH3
Length = 108
Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 30/93 (32%), Positives = 57/93 (61%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K +++ +++ PS N+++ L
Sbjct: 3 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLD 62
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 63 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 91
>FB|FBgn0038345 [details] [associations]
symbol:CG5213 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0022008
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 HSSP:P19339
GeneTree:ENSGT00560000077064 EMBL:AY089405 RefSeq:NP_650473.1
UniGene:Dm.5039 SMR:Q9VF55 STRING:Q9VF55 EnsemblMetazoa:FBtr0083148
GeneID:41892 KEGG:dme:Dmel_CG5213 UCSC:CG5213-RA
FlyBase:FBgn0038345 eggNOG:NOG294033 InParanoid:Q9VF55 OMA:RRERTND
OrthoDB:EOG4DNCM8 GenomeRNAi:41892 NextBio:826136 Uniprot:Q9VF55
Length = 251
Score = 155 (59.6 bits), Expect = 3.3e-11, P = 3.3e-11
Identities = 30/82 (36%), Positives = 48/82 (58%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T S YGFV+Y A A+N ++G + K +KV++ARPS ++LYV LP +
Sbjct: 78 TGISCCYGFVDYVSERQAAAAVNGMDGYETRGKRLKVAFARPSEYESTSSSLYVGNLPTY 137
Query: 92 MSQQELESLFSPYGRIITSRIL 113
M ++++ LF+ YG I+ +L
Sbjct: 138 MDEKKVRELFATYGNIVDVNLL 159
>UNIPROTKB|F1P990 [details] [associations]
symbol:RBMS2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00630000089747 CTD:5939 OMA:SQQMAPP EMBL:AAEX03006927
RefSeq:XP_538236.2 ProteinModelPortal:F1P990
Ensembl:ENSCAFT00000000217 GeneID:481115 KEGG:cfa:481115
Uniprot:F1P990
Length = 407
Score = 161 (61.7 bits), Expect = 3.6e-11, P = 3.6e-11
Identities = 36/103 (34%), Positives = 56/103 (54%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
ST + GYGFV++ P A+KA+ L +Q + K P+ NLY+S LP
Sbjct: 92 STNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQQEQDPT-------NLYISNLPL 144
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE + P+G++I++RIL D T G ++ + E+
Sbjct: 145 SMDEQELEGMLKPFGQVISTRILRDTSGTSRGVGFARMESTEK 187
>UNIPROTKB|E7ETU5 [details] [associations]
symbol:RBMS1 "RNA-binding motif,
single-stranded-interacting protein 1" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AC092153 EMBL:AC104598 EMBL:AC131754 IPI:IPI00033611
HGNC:HGNC:9907 ChiTaRS:RBMS1 EMBL:AC133105 SMR:E7ETU5
Ensembl:ENST00000409075 Ensembl:ENST00000409289
Ensembl:ENST00000409972 Uniprot:E7ETU5
Length = 370
Score = 160 (61.4 bits), Expect = 3.8e-11, P = 3.8e-11
Identities = 35/103 (33%), Positives = 59/103 (57%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA++ L +Q + K P+ NLY+S LP
Sbjct: 65 TTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPT-------NLYISNLPL 117
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G++I++RIL D+ T G ++ + E+
Sbjct: 118 SMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEK 160
>UNIPROTKB|O73664 [details] [associations]
symbol:RBMS1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
HSSP:P26378 GeneTree:ENSGT00630000089747 CTD:5937 eggNOG:NOG320163
HOGENOM:HOG000008467 HOVERGEN:HBG053108 EMBL:AADN02058669
EMBL:AADN02058670 EMBL:AADN02058671 EMBL:AADN02058672
EMBL:AADN02058673 EMBL:AB009975 IPI:IPI00586219 RefSeq:NP_990355.1
UniGene:Gga.4540 SMR:O73664 Ensembl:ENSGALT00000018146
GeneID:395880 KEGG:gga:395880 NextBio:20815947 Uniprot:O73664
Length = 373
Score = 160 (61.4 bits), Expect = 3.8e-11, P = 3.8e-11
Identities = 35/103 (33%), Positives = 59/103 (57%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA++ L +Q + K P+ NLY+S LP
Sbjct: 65 TTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPT-------NLYISNLPL 117
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G++I++RIL D+ T G ++ + E+
Sbjct: 118 SMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEK 160
>UNIPROTKB|E1C5J3 [details] [associations]
symbol:RBMS1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GeneTree:ENSGT00630000089747 OMA:THVQTAA EMBL:AADN02058669
EMBL:AADN02058670 EMBL:AADN02058671 EMBL:AADN02058672
EMBL:AADN02058673 IPI:IPI00680409 ProteinModelPortal:E1C5J3
Ensembl:ENSGALT00000033119 ArrayExpress:E1C5J3 Uniprot:E1C5J3
Length = 395
Score = 160 (61.4 bits), Expect = 4.4e-11, P = 4.4e-11
Identities = 35/103 (33%), Positives = 59/103 (57%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA++ L +Q + K P+ NLY+S LP
Sbjct: 90 TTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPT-------NLYISNLPL 142
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G++I++RIL D+ T G ++ + E+
Sbjct: 143 SMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEK 185
>UNIPROTKB|Q3ZBP3 [details] [associations]
symbol:RBMS1 "RNA-binding motif,
single-stranded-interacting protein 1" species:9913 "Bos taurus"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0003677
GO:GO:0006260 Gene3D:3.30.70.330 GO:GO:0003723
GeneTree:ENSGT00630000089747 EMBL:BC103186 IPI:IPI00696485
RefSeq:NP_001030438.1 UniGene:Bt.44980 UniGene:Bt.91245 HSSP:P29558
ProteinModelPortal:Q3ZBP3 SMR:Q3ZBP3 PRIDE:Q3ZBP3
Ensembl:ENSBTAT00000006826 GeneID:526135 KEGG:bta:526135 CTD:5937
eggNOG:NOG320163 HOGENOM:HOG000008467 HOVERGEN:HBG053108
InParanoid:Q3ZBP3 OMA:THVQTAA OrthoDB:EOG469QV2 NextBio:20874311
Uniprot:Q3ZBP3
Length = 403
Score = 160 (61.4 bits), Expect = 4.6e-11, P = 4.6e-11
Identities = 35/103 (33%), Positives = 59/103 (57%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA++ L +Q + K P+ NLY+S LP
Sbjct: 98 TTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPT-------NLYISNLPL 150
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G++I++RIL D+ T G ++ + E+
Sbjct: 151 SMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEK 193
>UNIPROTKB|E2RM13 [details] [associations]
symbol:RBMS1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GeneTree:ENSGT00630000089747 EMBL:AAEX03017702
EMBL:AAEX03017703 Ensembl:ENSCAFT00000015804 Uniprot:E2RM13
Length = 404
Score = 160 (61.4 bits), Expect = 4.6e-11, P = 4.6e-11
Identities = 35/103 (33%), Positives = 59/103 (57%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA++ L +Q + K P+ NLY+S LP
Sbjct: 96 TTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPT-------NLYISNLPL 148
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G++I++RIL D+ T G ++ + E+
Sbjct: 149 SMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEK 191
>UNIPROTKB|P29558 [details] [associations]
symbol:RBMS1 "RNA-binding motif,
single-stranded-interacting protein 1" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003690
"double-stranded DNA binding" evidence=NAS] [GO:0006260 "DNA
replication" evidence=NAS] [GO:0005634 "nucleus" evidence=NAS]
[GO:0003723 "RNA binding" evidence=NAS] [GO:0003697
"single-stranded DNA binding" evidence=NAS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0006396 "RNA processing" evidence=TAS]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0006260 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006396 GO:GO:0003690 GO:GO:0003697
EMBL:AC092153 CTD:5937 eggNOG:NOG320163 HOVERGEN:HBG053108
OrthoDB:EOG469QV2 EMBL:D28482 EMBL:X77494 EMBL:AC104598
EMBL:AC131754 EMBL:BC012992 EMBL:BC012993 EMBL:BC018951 EMBL:X64652
IPI:IPI00033611 IPI:IPI00929296 IPI:IPI00941661 PIR:I38042
PIR:S19873 PIR:S47659 PIR:S53612 RefSeq:NP_002888.1
RefSeq:NP_058520.1 UniGene:Hs.470412 PDB:1X5O PDBsum:1X5O
ProteinModelPortal:P29558 SMR:P29558 STRING:P29558
PhosphoSite:P29558 DMDM:55977783 PaxDb:P29558 PRIDE:P29558
DNASU:5937 Ensembl:ENST00000348849 GeneID:5937 KEGG:hsa:5937
UCSC:uc002ubn.3 UCSC:uc002ubo.3 GeneCards:GC02M161128
HGNC:HGNC:9907 HPA:HPA047943 MIM:602310 neXtProt:NX_P29558
PharmGKB:PA34273 InParanoid:P29558 PhylomeDB:P29558 ChiTaRS:RBMS1
EvolutionaryTrace:P29558 GenomeRNAi:5937 NextBio:23144
ArrayExpress:P29558 Bgee:P29558 CleanEx:HS_RBMS1
Genevestigator:P29558 GermOnline:ENSG00000153250 Uniprot:P29558
Length = 406
Score = 160 (61.4 bits), Expect = 4.6e-11, P = 4.6e-11
Identities = 35/103 (33%), Positives = 59/103 (57%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA++ L +Q + K P+ NLY+S LP
Sbjct: 98 TTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPT-------NLYISNLPL 150
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G++I++RIL D+ T G ++ + E+
Sbjct: 151 SMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEK 193
>UNIPROTKB|B4DN88 [details] [associations]
symbol:RBMS1 "RNA-binding motif,
single-stranded-interacting protein 1" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AC092153 HOGENOM:HOG000008467 HOVERGEN:HBG053108 OMA:THVQTAA
EMBL:AC104598 EMBL:AC131754 UniGene:Hs.470412 HGNC:HGNC:9907
ChiTaRS:RBMS1 EMBL:AC133105 EMBL:AK297812 IPI:IPI00102991
SMR:B4DN88 STRING:B4DN88 Ensembl:ENST00000392753 UCSC:uc002ubi.4
Uniprot:B4DN88
Length = 419
Score = 160 (61.4 bits), Expect = 5.0e-11, P = 5.0e-11
Identities = 35/103 (33%), Positives = 59/103 (57%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA++ L +Q + K P+ NLY+S LP
Sbjct: 98 TTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPT-------NLYISNLPL 150
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G++I++RIL D+ T G ++ + E+
Sbjct: 151 SMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEK 193
>UNIPROTKB|E2RMT9 [details] [associations]
symbol:RBMS1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GeneTree:ENSGT00630000089747 OMA:THVQTAA
EMBL:AAEX03017702 EMBL:AAEX03017703 Ensembl:ENSCAFT00000015788
NextBio:20854045 Uniprot:E2RMT9
Length = 420
Score = 160 (61.4 bits), Expect = 5.0e-11, P = 5.0e-11
Identities = 35/103 (33%), Positives = 59/103 (57%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA++ L +Q + K P+ NLY+S LP
Sbjct: 99 TTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPT-------NLYISNLPL 151
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G++I++RIL D+ T G ++ + E+
Sbjct: 152 SMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEK 194
>UNIPROTKB|F8W1T6 [details] [associations]
symbol:RBMS2 "RNA-binding motif,
single-stranded-interacting protein 2" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AC090681 HGNC:HGNC:9909 EMBL:AC097104 IPI:IPI01022509
ProteinModelPortal:F8W1T6 SMR:F8W1T6 Ensembl:ENST00000552247
ArrayExpress:F8W1T6 Bgee:F8W1T6 Uniprot:F8W1T6
Length = 344
Score = 158 (60.7 bits), Expect = 5.2e-11, P = 5.2e-11
Identities = 35/103 (33%), Positives = 56/103 (54%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA+ L +Q + K P+ NLY+S LP
Sbjct: 92 TTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQQEQDPT-------NLYISNLPL 144
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE + P+G++I++RIL D T G ++ + E+
Sbjct: 145 SMDEQELEGMLKPFGQVISTRILRDTSGTSRGVGFARMESTEK 187
>RGD|1307777 [details] [associations]
symbol:Rbms1 "RNA binding motif, single stranded interacting
protein 1" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1307777 GO:GO:0005634 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
Gene3D:3.30.70.330 GO:GO:0003723 GeneTree:ENSGT00630000089747
HSSP:P29558 CTD:5937 eggNOG:NOG320163 HOGENOM:HOG000008467
HOVERGEN:HBG053108 OMA:THVQTAA EMBL:BC087094 IPI:IPI00373620
RefSeq:NP_001012184.1 UniGene:Rn.98522 ProteinModelPortal:Q5PQP1
SMR:Q5PQP1 PRIDE:Q5PQP1 Ensembl:ENSRNOT00000011682 GeneID:362138
KEGG:rno:362138 UCSC:RGD:1307777 InParanoid:Q5PQP1 NextBio:678788
ArrayExpress:Q5PQP1 Genevestigator:Q5PQP1 Uniprot:Q5PQP1
Length = 403
Score = 159 (61.0 bits), Expect = 5.9e-11, P = 5.9e-11
Identities = 34/103 (33%), Positives = 59/103 (57%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA++ L +Q + K P+ NLY+S LP
Sbjct: 98 ATNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPT-------NLYISNLPL 150
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G++I++R+L D+ T G ++ + E+
Sbjct: 151 SMDEQELENMLKPFGQVISTRVLRDSSGTSRGVGFARMESTEK 193
>UNIPROTKB|Q5PQP1 [details] [associations]
symbol:Rbms1 "RNA-binding motif,
single-stranded-interacting protein 1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 RGD:1307777 GO:GO:0005634
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 Gene3D:3.30.70.330
GO:GO:0003723 GeneTree:ENSGT00630000089747 HSSP:P29558 CTD:5937
eggNOG:NOG320163 HOGENOM:HOG000008467 HOVERGEN:HBG053108
OMA:THVQTAA EMBL:BC087094 IPI:IPI00373620 RefSeq:NP_001012184.1
UniGene:Rn.98522 ProteinModelPortal:Q5PQP1 SMR:Q5PQP1 PRIDE:Q5PQP1
Ensembl:ENSRNOT00000011682 GeneID:362138 KEGG:rno:362138
UCSC:RGD:1307777 InParanoid:Q5PQP1 NextBio:678788
ArrayExpress:Q5PQP1 Genevestigator:Q5PQP1 Uniprot:Q5PQP1
Length = 403
Score = 159 (61.0 bits), Expect = 5.9e-11, P = 5.9e-11
Identities = 34/103 (33%), Positives = 59/103 (57%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA++ L +Q + K P+ NLY+S LP
Sbjct: 98 ATNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPT-------NLYISNLPL 150
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G++I++R+L D+ T G ++ + E+
Sbjct: 151 SMDEQELENMLKPFGQVISTRVLRDSSGTSRGVGFARMESTEK 193
>UNIPROTKB|D4A6H0 [details] [associations]
symbol:Rbms1 "RNA-binding motif,
single-stranded-interacting protein 1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 RGD:1307777 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 OrthoDB:EOG469QV2 IPI:IPI00567364
ProteinModelPortal:D4A6H0 Ensembl:ENSRNOT00000047180
ArrayExpress:D4A6H0 Uniprot:D4A6H0
Length = 411
Score = 159 (61.0 bits), Expect = 6.1e-11, P = 6.1e-11
Identities = 34/103 (33%), Positives = 59/103 (57%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA++ L +Q + K P+ NLY+S LP
Sbjct: 90 ATNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPT-------NLYISNLPL 142
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G++I++R+L D+ T G ++ + E+
Sbjct: 143 SMDEQELENMLKPFGQVISTRVLRDSSGTSRGVGFARMESTEK 185
>UNIPROTKB|Q3ZC34 [details] [associations]
symbol:RBMS2 "RNA-binding motif,
single-stranded-interacting protein 2" species:9913 "Bos taurus"
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GeneTree:ENSGT00630000089747 eggNOG:NOG320163 HOGENOM:HOG000008467
HOVERGEN:HBG053108 OrthoDB:EOG469QV2 EMBL:BC102935 IPI:IPI00706755
RefSeq:NP_001029537.1 UniGene:Bt.87430 HSSP:Q15434
ProteinModelPortal:Q3ZC34 SMR:Q3ZC34 PRIDE:Q3ZC34
Ensembl:ENSBTAT00000023705 GeneID:509798 KEGG:bta:509798 CTD:5939
InParanoid:Q3ZC34 OMA:SQQMAPP NextBio:20869135 Uniprot:Q3ZC34
Length = 407
Score = 158 (60.7 bits), Expect = 7.7e-11, P = 7.7e-11
Identities = 35/103 (33%), Positives = 56/103 (54%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA+ L +Q + K P+ NLY+S LP
Sbjct: 92 TTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQQEQDPT-------NLYISNLPL 144
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE + P+G++I++RIL D T G ++ + E+
Sbjct: 145 SMDEQELEGMLKPFGQVISTRILRDTSGTSRGVGFARMESTEK 187
>UNIPROTKB|Q15434 [details] [associations]
symbol:RBMS2 "RNA-binding motif,
single-stranded-interacting protein 2" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006396 "RNA processing" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0006396 eggNOG:NOG320163 HOGENOM:HOG000008467
HOVERGEN:HBG053108 OrthoDB:EOG469QV2 CTD:5939 OMA:SQQMAPP
EMBL:D28483 EMBL:BC027863 EMBL:BC072679 IPI:IPI00003706 PIR:S47660
RefSeq:NP_002889.1 UniGene:Hs.505729 UniGene:Hs.683360 PDB:1X4E
PDBsum:1X4E ProteinModelPortal:Q15434 SMR:Q15434 IntAct:Q15434
STRING:Q15434 PhosphoSite:Q15434 DMDM:55976301 PRIDE:Q15434
Ensembl:ENST00000262031 GeneID:5939 KEGG:hsa:5939 UCSC:uc001sln.2
GeneCards:GC12P056915 HGNC:HGNC:9909 HPA:HPA039225 MIM:602387
neXtProt:NX_Q15434 PharmGKB:PA34275 InParanoid:Q15434
PhylomeDB:Q15434 EvolutionaryTrace:Q15434 GenomeRNAi:5939
NextBio:23154 ArrayExpress:Q15434 Bgee:Q15434 CleanEx:HS_RBMS2
Genevestigator:Q15434 GermOnline:ENSG00000076067 Uniprot:Q15434
Length = 407
Score = 158 (60.7 bits), Expect = 7.7e-11, P = 7.7e-11
Identities = 35/103 (33%), Positives = 56/103 (54%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA+ L +Q + K P+ NLY+S LP
Sbjct: 92 TTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQQEQDPT-------NLYISNLPL 144
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE + P+G++I++RIL D T G ++ + E+
Sbjct: 145 SMDEQELEGMLKPFGQVISTRILRDTSGTSRGVGFARMESTEK 187
>UNIPROTKB|F1RPR6 [details] [associations]
symbol:RBMS1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GeneTree:ENSGT00630000089747 OMA:THVQTAA
EMBL:CU914319 Ensembl:ENSSSCT00000017300 Uniprot:F1RPR6
Length = 375
Score = 157 (60.3 bits), Expect = 8.3e-11, P = 8.3e-11
Identities = 34/92 (36%), Positives = 54/92 (58%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA++ L +Q + K P+ NLY+S LP
Sbjct: 65 TTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPT-------NLYISNLPL 117
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENG 122
M +QELE++ P+G++I++RIL D+ T G
Sbjct: 118 SMDEQELENMLKPFGQVISTRILRDSSGTSRG 149
>TAIR|locus:2058573 [details] [associations]
symbol:PAB4 "AT2G23350" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0046686
"response to cadmium ion" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005829
GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC002391 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 OMA:MIRITYS EMBL:AY050859
EMBL:AY079389 IPI:IPI00530940 PIR:T00497 RefSeq:NP_179916.1
UniGene:At.25439 ProteinModelPortal:O22173 SMR:O22173 IntAct:O22173
STRING:O22173 PaxDb:O22173 PRIDE:O22173 ProMEX:O22173
EnsemblPlants:AT2G23350.1 GeneID:816867 KEGG:ath:AT2G23350
TAIR:At2g23350 InParanoid:O22173 PhylomeDB:O22173
ProtClustDB:CLSN2913301 Genevestigator:O22173 Uniprot:O22173
Length = 662
Score = 161 (61.7 bits), Expect = 8.5e-11, P = 8.5e-11
Identities = 36/94 (38%), Positives = 53/94 (56%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYA-RPSSESIKGA-NLYVSGL 88
+T SLGYG+VNY +DAEKA+ LN L K I+++Y+ R SS G NL+V L
Sbjct: 82 ATNTSLGYGYVNYSNTDDAEKAMQKLNYSYLNGKMIRITYSSRDSSARRSGVGNLFVKNL 141
Query: 89 PKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS G I++ ++ D++ G
Sbjct: 142 DKSVDNKTLHEAFSGCGTIVSCKVATDHMGQSRG 175
Score = 121 (47.7 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 37/119 (31%), Positives = 60/119 (50%)
Query: 7 LNKLFTYEKVHLGFSDAEICVFL-IST---AQSLGYGFVNYHRPEDAEKAINTLNGLRLQ 62
L+K + +H FS V ++T QS GYGFV + + A+ AI LNG L
Sbjct: 141 LDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLN 200
Query: 63 NKTIKVS-YARP-----SSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+K I V + R +++ +K N+YV L + + EL++ F YG I ++ ++ D
Sbjct: 201 DKQIFVGPFLRKEERESAADKMKFTNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRD 259
Score = 89 (36.4 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
Identities = 17/39 (43%), Positives = 24/39 (61%)
Query: 38 YGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
+GFVN+ PEDA +A+ LNG + +K V A+ SE
Sbjct: 267 FGFVNFENPEDAARAVEALNGKKFDDKEWYVGKAQKKSE 305
Score = 74 (31.1 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
Identities = 17/56 (30%), Positives = 29/56 (51%)
Query: 70 YARPSSES---IKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
Y + SS+ G NLYV L ++ ++L LF+ +G I + +++ D T G
Sbjct: 314 YEQGSSDGGNKFDGLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKG 369
>UNIPROTKB|D4A988 [details] [associations]
symbol:Rbms2 "Protein Rbms2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 RGD:1304813 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 OrthoDB:EOG469QV2 IPI:IPI00567496
Ensembl:ENSRNOT00000004137 ArrayExpress:D4A988 Uniprot:D4A988
Length = 352
Score = 156 (60.0 bits), Expect = 9.1e-11, P = 9.1e-11
Identities = 34/103 (33%), Positives = 55/103 (53%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA+ L +Q + K P+ NLY+S LP
Sbjct: 90 TTNKCKGYGFVDFDSPSSAQKAVTALKASGVQAQMAKQQEQDPT-------NLYISNLPL 142
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE + P+G++I++RIL D G ++ + E+
Sbjct: 143 SMDEQELEGMLKPFGQVISTRILRDTTGASRGVGFARMESTEK 185
>TAIR|locus:2124261 [details] [associations]
symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0009651
"response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
Uniprot:P42731
Length = 629
Score = 160 (61.4 bits), Expect = 1.0e-10, P = 1.0e-10
Identities = 33/100 (33%), Positives = 55/100 (55%)
Query: 25 ICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGAN 82
+C L+ T +SLGYG+VN+ P+DA +AI LN + L K I+V Y+ PS N
Sbjct: 67 VCRDLV-TRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSHRDPSVRRSGAGN 125
Query: 83 LYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+++ L + + + L FS +G I++ ++ D+ G
Sbjct: 126 IFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKG 165
Score = 143 (55.4 bits), Expect = 6.8e-09, P = 6.8e-09
Identities = 36/110 (32%), Positives = 57/110 (51%)
Query: 20 FSDAEIC-VFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVS-YAR----- 72
F + C V + S+ QS GYGFV Y E A+KAI LNG+ L +K + V + R
Sbjct: 147 FGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERD 206
Query: 73 PSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
++ K N+YV L + + +L++ F YG+I ++ ++ D G
Sbjct: 207 STANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKG 256
Score = 101 (40.6 bits), Expect = 0.00022, P = 0.00022
Identities = 21/85 (24%), Positives = 45/85 (52%)
Query: 41 VNYHRPEDAEKAINTLNGLRLQNKTIKVSYA---RPSSESIKGANLYVSGLPKHMSQQEL 97
+N H+ +D E + + ++V Y + +++ + +NLYV L +S ++L
Sbjct: 275 LNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKL 334
Query: 98 ESLFSPYGRIITSRILCDNLATENG 122
+ +FSP+G + +S+++ D T G
Sbjct: 335 KEIFSPFGTVTSSKVMRDPNGTSKG 359
>RGD|1304813 [details] [associations]
symbol:Rbms2 "RNA binding motif, single stranded interacting
protein 2" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1304813 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:CH474104 GeneTree:ENSGT00630000089747
eggNOG:NOG320163 HOGENOM:HOG000008467 HOVERGEN:HBG053108 CTD:5939
OMA:SQQMAPP EMBL:BC097377 IPI:IPI00371268 RefSeq:NP_001020574.1
UniGene:Rn.162925 SMR:Q4QR81 Ensembl:ENSRNOT00000048848
GeneID:288771 KEGG:rno:288771 UCSC:RGD:1304813 InParanoid:Q4QR81
NextBio:628683 Genevestigator:Q4QR81 Uniprot:Q4QR81
Length = 379
Score = 156 (60.0 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 34/103 (33%), Positives = 55/103 (53%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA+ L +Q + K P+ NLY+S LP
Sbjct: 90 TTNKCKGYGFVDFDSPSSAQKAVTALKASGVQAQMAKQQEQDPT-------NLYISNLPL 142
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE + P+G++I++RIL D G ++ + E+
Sbjct: 143 SMDEQELEGMLKPFGQVISTRILRDTTGASRGVGFARMESTEK 185
>TAIR|locus:2012161 [details] [associations]
symbol:PAB8 "AT1G49760" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0046686 "response to cadmium ion"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006164 "purine nucleotide
biosynthetic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005829 GO:GO:0046686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC011807 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 ProtClustDB:CLSN2714507
EMBL:AF370517 EMBL:AY064622 IPI:IPI00535850 PIR:C96534
RefSeq:NP_001185184.1 RefSeq:NP_564554.1 UniGene:At.21584
UniGene:At.67107 UniGene:At.67318 ProteinModelPortal:Q9FXA2
SMR:Q9FXA2 IntAct:Q9FXA2 STRING:Q9FXA2 PaxDb:Q9FXA2 PRIDE:Q9FXA2
ProMEX:Q9FXA2 EnsemblPlants:AT1G49760.1 EnsemblPlants:AT1G49760.2
GeneID:841399 KEGG:ath:AT1G49760 TAIR:At1g49760 InParanoid:Q9FXA2
OMA:RPPYYAP PhylomeDB:Q9FXA2 Genevestigator:Q9FXA2 Uniprot:Q9FXA2
Length = 671
Score = 160 (61.4 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 33/95 (34%), Positives = 54/95 (56%)
Query: 30 ISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYA-R-PSSESIKGANLYVSG 87
++T +SLGYG+VNY P+DA +A+N LN + L + I+V Y+ R PS N+++
Sbjct: 80 MTTRRSLGYGYVNYATPQDASRALNELNFMALNGRAIRVMYSVRDPSLRKSGVGNIFIKN 139
Query: 88 LPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
L K + + L FS +G I++ ++ D G
Sbjct: 140 LDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKG 174
Score = 144 (55.7 bits), Expect = 5.8e-09, P = 5.8e-09
Identities = 40/117 (34%), Positives = 62/117 (52%)
Query: 7 LNKLFTYEKVHLGFSD-AEI--CVFLIS-TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQ 62
L+K ++ +H FS I C + + QS GYGFV Y E A+ AI+ LNG+ L
Sbjct: 140 LDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLN 199
Query: 63 NKTIKVS-YAR-----PSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRIL 113
+K + V + PS E +K N+YV L + +S +EL +F +G + TS ++
Sbjct: 200 DKQVYVGPFVHKLQRDPSGEKVKFTNVYVKNLSESLSDEELNKVFGEFG-VTTSCVI 255
Score = 90 (36.7 bits), Expect = 9.5e-07, Sum P(2) = 9.5e-07
Identities = 24/79 (30%), Positives = 42/79 (53%)
Query: 2 VYQTLLNKLFTYEKVHLGFSDAEI---CVFLIS-TAQSLGYGFVNYHRPEDAEKAINTLN 57
VY L++ + E+++ F + + CV + +S G+GFVN+ +DA +A++ LN
Sbjct: 226 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALN 285
Query: 58 GLRLQNKTIKVSYARPSSE 76
G +K V A+ SE
Sbjct: 286 GKTFDDKEWFVGKAQKKSE 304
Score = 78 (32.5 bits), Expect = 9.5e-07, Sum P(2) = 9.5e-07
Identities = 15/65 (23%), Positives = 32/65 (49%)
Query: 72 RPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGR 131
+ +++ +G+NLYV L + ++ +L F+P+G I + +++ D G +
Sbjct: 318 KEAADKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTP 377
Query: 132 ERLRR 136
E R
Sbjct: 378 EEATR 382
>UNIPROTKB|G3MYW4 [details] [associations]
symbol:PABPC1L2A "Uncharacterized protein" species:9913
"Bos taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:340529 EMBL:DAAA02072604
RefSeq:XP_002700050.1 RefSeq:XP_003584787.1 RefSeq:XP_599343.3
ProteinModelPortal:G3MYW4 Ensembl:ENSBTAT00000066058 GeneID:521086
GeneID:784438 KEGG:bta:521086 KEGG:bta:784438 OMA:ILSIRLC
NextBio:20873237 Uniprot:G3MYW4
Length = 200
Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 27/86 (31%), Positives = 54/86 (62%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VNY +P DA++A+ TLN ++ + +++ +++ PS N+++ L
Sbjct: 39 TRRSLGYAYVNYQQPVDAKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLG 98
Query: 90 KHMSQQELESLFSPYGRIITSRILCD 115
K + + L ++FS +G I++ ++ CD
Sbjct: 99 KTIDNKALYNIFSAFGNILSCKVACD 124
>UNIPROTKB|G3MZ94 [details] [associations]
symbol:PABPC1L2A "Uncharacterized protein" species:9913
"Bos taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:340529 OMA:DSANKVY GeneID:521086
KEGG:bta:521086 EMBL:DAAA02072607 RefSeq:XP_003588203.1
Ensembl:ENSBTAT00000064260 Uniprot:G3MZ94
Length = 200
Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 27/86 (31%), Positives = 54/86 (62%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VNY +P DA++A+ TLN ++ + +++ +++ PS N+++ L
Sbjct: 39 TRRSLGYAYVNYQQPVDAKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLG 98
Query: 90 KHMSQQELESLFSPYGRIITSRILCD 115
K + + L ++FS +G I++ ++ CD
Sbjct: 99 KTIDNKALYNIFSAFGNILSCKVACD 124
>UNIPROTKB|Q5JQF8 [details] [associations]
symbol:PABPC1L2A "Polyadenylate-binding protein 1-like 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471104 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
HOGENOM:HOG000217922 HSSP:P11940 EMBL:AL662864 EMBL:BC041956
EMBL:BC136492 IPI:IPI00217142 RefSeq:NP_001012995.1
RefSeq:NP_001035971.1 UniGene:Hs.450320 UniGene:Hs.567854
ProteinModelPortal:Q5JQF8 SMR:Q5JQF8 PhosphoSite:Q5JQF8
PaxDb:Q5JQF8 PRIDE:Q5JQF8 Ensembl:ENST00000373519
Ensembl:ENST00000373521 Ensembl:ENST00000453389
Ensembl:ENST00000538388 GeneID:340529 GeneID:645974 KEGG:hsa:340529
KEGG:hsa:645974 UCSC:uc004ebf.3 CTD:340529 CTD:645974
GeneCards:GC0XM072297 GeneCards:GC0XP072223 H-InvDB:HIX0056425
HGNC:HGNC:27989 HGNC:HGNC:31852 HPA:HPA041573 neXtProt:NX_Q5JQF8
PharmGKB:PA162398594 InParanoid:Q5JQF8 OMA:RIMYSHC
OrthoDB:EOG4QVCCZ NextBio:97904 Bgee:Q5JQF8 CleanEx:HS_PABPC1L2A
CleanEx:HS_PABPC1L2B Genevestigator:Q5JQF8 Uniprot:Q5JQF8
Length = 200
Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 27/86 (31%), Positives = 54/86 (62%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VNY +P DA++A+ TLN ++ + +++ +++ PS N+++ L
Sbjct: 39 TRRSLGYAYVNYQQPVDAKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLG 98
Query: 90 KHMSQQELESLFSPYGRIITSRILCD 115
K + + L ++FS +G I++ ++ CD
Sbjct: 99 KTIDNKALYNIFSAFGNILSCKVACD 124
>UNIPROTKB|F1RPL9 [details] [associations]
symbol:LOC100623240 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 EMBL:FP236342 RefSeq:XP_003135232.1
RefSeq:XP_003360416.1 Ensembl:ENSSSCT00000023519
Ensembl:ENSSSCT00000025081 GeneID:100525442 GeneID:100623240
KEGG:ssc:100525442 KEGG:ssc:100623240 OMA:DSANKVY Uniprot:F1RPL9
Length = 200
Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 27/86 (31%), Positives = 54/86 (62%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VNY +P DA++A+ TLN ++ + +++ +++ PS N+++ L
Sbjct: 39 TRRSLGYAYVNYQQPVDAKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLG 98
Query: 90 KHMSQQELESLFSPYGRIITSRILCD 115
K + + L ++FS +G I++ ++ CD
Sbjct: 99 KTIDNKALYNIFSAFGNILSCKVACD 124
>UNIPROTKB|B1ANR0 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0000166
EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL365277
HOVERGEN:HBG002295 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AL845289
UniGene:Hs.169900 HGNC:HGNC:8557 ChiTaRS:PABPC4 IPI:IPI00642944
SMR:B1ANR0 STRING:B1ANR0 Ensembl:ENST00000372862 Uniprot:B1ANR0
Length = 615
Score = 159 (61.0 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 35/105 (33%), Positives = 64/105 (60%)
Query: 25 ICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGAN 82
+C +I T +SLGY +VN+ +P DAE+A++T+N ++ K I++ +++ PS N
Sbjct: 42 VCRDMI-TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGN 100
Query: 83 LYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG-KYYS 126
+++ L K + + L FS +G I++ +++CD ENG K Y+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD----ENGSKGYA 141
Score = 117 (46.2 bits), Expect = 4.0e-06, P = 4.0e-06
Identities = 33/118 (27%), Positives = 58/118 (49%)
Query: 20 FSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSES 77
F + C + S GY FV++ E A+KAI +NG+ L ++ + V +R E+
Sbjct: 122 FGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 78 IKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLG 129
GA N+Y+ + + + L+ LFS +G+ ++ +++ D NGK G G
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD----PNGKS-KGFG 234
Score = 90 (36.7 bits), Expect = 4.0e-06, Sum P(2) = 4.0e-06
Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 34 QSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
+S G+GFV+Y + EDA KA+ +NG + K I V A+ E
Sbjct: 229 KSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVE 271
Score = 71 (30.1 bits), Expect = 4.0e-06, Sum P(2) = 4.0e-06
Identities = 11/38 (28%), Positives = 24/38 (63%)
Query: 79 KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
+G NLY+ L + ++L FSP+G I +++++ ++
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED 329
>UNIPROTKB|E1C903 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 CTD:8761 OMA:XVVCDEN EMBL:AADN02043739
EMBL:AADN02043740 IPI:IPI00587440 RefSeq:XP_417821.2
UniGene:Gga.11375 ProteinModelPortal:E1C903 PRIDE:E1C903
Ensembl:ENSGALT00000006028 GeneID:419674 KEGG:gga:419674
NextBio:20822696 Uniprot:E1C903
Length = 630
Score = 159 (61.0 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 35/105 (33%), Positives = 64/105 (60%)
Query: 25 ICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGAN 82
+C +I T +SLGY +VN+ +P DAE+A++T+N ++ K I++ +++ PS N
Sbjct: 42 VCRDMI-TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGN 100
Query: 83 LYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG-KYYS 126
+++ L K + + L FS +G I++ +++CD ENG K Y+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD----ENGSKGYA 141
Score = 118 (46.6 bits), Expect = 3.3e-06, P = 3.3e-06
Identities = 29/111 (26%), Positives = 53/111 (47%)
Query: 20 FSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSES 77
F + C + S GY FV++ + A++AI +NG+ L ++ + V +R E+
Sbjct: 122 FGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 78 IKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
GA N+Y+ M + L+ LFS YG+ ++ +++ D G
Sbjct: 182 ELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSKG 232
Score = 88 (36.0 bits), Expect = 8.9e-06, Sum P(2) = 8.9e-06
Identities = 17/45 (37%), Positives = 27/45 (60%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
T +S G+GFV++ + EDA KA+ +NG + K + V A+ E
Sbjct: 227 TGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVE 271
Score = 71 (30.1 bits), Expect = 8.9e-06, Sum P(2) = 8.9e-06
Identities = 11/38 (28%), Positives = 24/38 (63%)
Query: 79 KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
+G NLY+ L + ++L FSP+G I +++++ ++
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED 329
>UNIPROTKB|E2R9I0 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010494 GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:AAEX03009572 ProteinModelPortal:E2R9I0
Ensembl:ENSCAFT00000004950 Uniprot:E2R9I0
Length = 631
Score = 159 (61.0 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 35/105 (33%), Positives = 64/105 (60%)
Query: 25 ICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGAN 82
+C +I T +SLGY +VN+ +P DAE+A++T+N ++ K I++ +++ PS N
Sbjct: 42 VCRDMI-TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGN 100
Query: 83 LYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG-KYYS 126
+++ L K + + L FS +G I++ +++CD ENG K Y+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD----ENGSKGYA 141
Score = 116 (45.9 bits), Expect = 5.3e-06, P = 5.3e-06
Identities = 29/111 (26%), Positives = 54/111 (48%)
Query: 20 FSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSES 77
F + C + S GY FV++ E A+KAI +NG+ L ++ + V +R E+
Sbjct: 122 FGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 78 IKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
GA N+Y+ + + + L+ LFS +G+ ++ +++ D G
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKG 232
Score = 92 (37.4 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
+ +S G+GFV+Y + EDA KA+ +NG + K I V A+ E
Sbjct: 227 SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVE 271
Score = 71 (30.1 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 11/38 (28%), Positives = 24/38 (63%)
Query: 79 KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
+G NLY+ L + ++L FSP+G I +++++ ++
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED 329
>UNIPROTKB|F1SV06 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:CR956622 Ensembl:ENSSSCT00000004056 Uniprot:F1SV06
Length = 631
Score = 159 (61.0 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 35/105 (33%), Positives = 64/105 (60%)
Query: 25 ICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGAN 82
+C +I T +SLGY +VN+ +P DAE+A++T+N ++ K I++ +++ PS N
Sbjct: 42 VCRDMI-TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGN 100
Query: 83 LYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG-KYYS 126
+++ L K + + L FS +G I++ +++CD ENG K Y+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD----ENGSKGYA 141
Score = 116 (45.9 bits), Expect = 5.3e-06, P = 5.3e-06
Identities = 29/111 (26%), Positives = 54/111 (48%)
Query: 20 FSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSES 77
F + C + S GY FV++ E A+KAI +NG+ L ++ + V +R E+
Sbjct: 122 FGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 78 IKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
GA N+Y+ + + + L+ LFS +G+ ++ +++ D G
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKG 232
Score = 92 (37.4 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
+ +S G+GFV+Y + EDA KA+ +NG + K I V A+ E
Sbjct: 227 SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVE 271
Score = 71 (30.1 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 11/38 (28%), Positives = 24/38 (63%)
Query: 79 KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
+G NLY+ L + ++L FSP+G I +++++ ++
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED 329
>UNIPROTKB|D4AC14 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00204295 PRIDE:D4AC14
Ensembl:ENSRNOT00000021045 ArrayExpress:D4AC14 Uniprot:D4AC14
Length = 631
Score = 159 (61.0 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 35/105 (33%), Positives = 64/105 (60%)
Query: 25 ICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGAN 82
+C +I T +SLGY +VN+ +P DAE+A++T+N ++ K I++ +++ PS N
Sbjct: 42 VCRDMI-TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGN 100
Query: 83 LYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG-KYYS 126
+++ L K + + L FS +G I++ +++CD ENG K Y+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD----ENGSKGYA 141
Score = 112 (44.5 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 28/104 (26%), Positives = 51/104 (49%)
Query: 20 FSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSES 77
F + C + S GY FV++ E A KAI +NG+ L ++ + V +R E+
Sbjct: 122 FGNILSCKVVCDENGSKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 78 IKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
GA N+Y+ + + + L LFS +G+ ++ +++ D
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRD 225
Score = 93 (37.8 bits), Expect = 8.8e-07, Sum P(2) = 8.8e-07
Identities = 18/45 (40%), Positives = 28/45 (62%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
+ +S G+GFV+Y + EDA KA+ +NG + K+I V A+ E
Sbjct: 227 SGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVE 271
Score = 71 (30.1 bits), Expect = 8.8e-07, Sum P(2) = 8.8e-07
Identities = 11/38 (28%), Positives = 24/38 (63%)
Query: 79 KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
+G NLY+ L + ++L FSP+G I +++++ ++
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED 329
>UNIPROTKB|Q13310 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0017130 "poly(C) RNA
binding" evidence=IDA] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006412 "translation" evidence=TAS] [GO:0007596 "blood
coagulation" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 EMBL:CH471059
GO:GO:0006412 GO:GO:0007596 Gene3D:3.30.70.330 GO:GO:0006401
GO:GO:0006396 GO:GO:0010494 EMBL:AL365277 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:U33818
EMBL:U75686 EMBL:AL845289 EMBL:BC065540 EMBL:BC094755
IPI:IPI00012726 IPI:IPI00555747 IPI:IPI00642904
RefSeq:NP_001129125.1 RefSeq:NP_001129126.1 RefSeq:NP_003810.1
UniGene:Hs.169900 ProteinModelPortal:Q13310 SMR:Q13310
IntAct:Q13310 MINT:MINT-1189867 STRING:Q13310 PhosphoSite:Q13310
DMDM:12229875 PaxDb:Q13310 PRIDE:Q13310 Ensembl:ENST00000372856
Ensembl:ENST00000372857 Ensembl:ENST00000372858 GeneID:8761
KEGG:hsa:8761 UCSC:uc001cdm.2 UCSC:uc010oiv.1 CTD:8761
GeneCards:GC01M040026 HGNC:HGNC:8557 HPA:HPA027301 MIM:603407
neXtProt:NX_Q13310 PharmGKB:PA32883 OMA:XVVCDEN OrthoDB:EOG4T1HM1
PhylomeDB:Q13310 ChEMBL:CHEMBL5333 ChiTaRS:PABPC4 GenomeRNAi:8761
NextBio:32864 ArrayExpress:Q13310 Bgee:Q13310 CleanEx:HS_PABPC4
Genevestigator:Q13310 GermOnline:ENSG00000090621 Uniprot:Q13310
Length = 644
Score = 159 (61.0 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 35/105 (33%), Positives = 64/105 (60%)
Query: 25 ICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGAN 82
+C +I T +SLGY +VN+ +P DAE+A++T+N ++ K I++ +++ PS N
Sbjct: 42 VCRDMI-TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGN 100
Query: 83 LYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG-KYYS 126
+++ L K + + L FS +G I++ +++CD ENG K Y+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD----ENGSKGYA 141
Score = 117 (46.2 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 33/118 (27%), Positives = 58/118 (49%)
Query: 20 FSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSES 77
F + C + S GY FV++ E A+KAI +NG+ L ++ + V +R E+
Sbjct: 122 FGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 78 IKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLG 129
GA N+Y+ + + + L+ LFS +G+ ++ +++ D NGK G G
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD----PNGKS-KGFG 234
Score = 90 (36.7 bits), Expect = 4.5e-06, Sum P(2) = 4.5e-06
Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 34 QSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
+S G+GFV+Y + EDA KA+ +NG + K I V A+ E
Sbjct: 229 KSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVE 271
Score = 71 (30.1 bits), Expect = 4.5e-06, Sum P(2) = 4.5e-06
Identities = 11/38 (28%), Positives = 24/38 (63%)
Query: 79 KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
+G NLY+ L + ++L FSP+G I +++++ ++
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED 329
>UNIPROTKB|A4IFC3 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 GeneTree:ENSGT00640000091232 CTD:8761
OMA:XVVCDEN OrthoDB:EOG4T1HM1 EMBL:DAAA02009142 EMBL:BC134509
IPI:IPI00689745 RefSeq:NP_001077193.1 UniGene:Bt.11192 SMR:A4IFC3
Ensembl:ENSBTAT00000022761 GeneID:534576 KEGG:bta:534576
InParanoid:A4IFC3 NextBio:20876450 Uniprot:A4IFC3
Length = 645
Score = 159 (61.0 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 35/105 (33%), Positives = 64/105 (60%)
Query: 25 ICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGAN 82
+C +I T +SLGY +VN+ +P DAE+A++T+N ++ K I++ +++ PS N
Sbjct: 42 VCRDMI-TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGN 100
Query: 83 LYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG-KYYS 126
+++ L K + + L FS +G I++ +++CD ENG K Y+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD----ENGSKGYA 141
Score = 116 (45.9 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 29/111 (26%), Positives = 54/111 (48%)
Query: 20 FSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSES 77
F + C + S GY FV++ E A+KAI +NG+ L ++ + V +R E+
Sbjct: 122 FGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 78 IKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
GA N+Y+ + + + L+ LFS +G+ ++ +++ D G
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKG 232
Score = 91 (37.1 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
+ +S G+GFV+Y + EDA KA+ +NG + K I V A+ E
Sbjct: 227 SGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVE 271
Score = 71 (30.1 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 11/38 (28%), Positives = 24/38 (63%)
Query: 79 KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
+G NLY+ L + ++L FSP+G I +++++ ++
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED 329
>UNIPROTKB|G3V9N0 [details] [associations]
symbol:Pabpc4 "RCG31475, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:CH473968 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 GeneTree:ENSGT00640000091232
OMA:XVVCDEN PRIDE:G3V9N0 Ensembl:ENSRNOT00000056592 Uniprot:G3V9N0
Length = 660
Score = 159 (61.0 bits), Expect = 1.4e-10, P = 1.4e-10
Identities = 35/105 (33%), Positives = 64/105 (60%)
Query: 25 ICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGAN 82
+C +I T +SLGY +VN+ +P DAE+A++T+N ++ K I++ +++ PS N
Sbjct: 42 VCRDMI-TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGN 100
Query: 83 LYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG-KYYS 126
+++ L K + + L FS +G I++ +++CD ENG K Y+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD----ENGSKGYA 141
Score = 112 (44.5 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 28/104 (26%), Positives = 51/104 (49%)
Query: 20 FSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSES 77
F + C + S GY FV++ E A KAI +NG+ L ++ + V +R E+
Sbjct: 122 FGNILSCKVVCDENGSKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 78 IKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
GA N+Y+ + + + L LFS +G+ ++ +++ D
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRD 225
Score = 93 (37.8 bits), Expect = 9.8e-07, Sum P(2) = 9.8e-07
Identities = 18/45 (40%), Positives = 28/45 (62%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
+ +S G+GFV+Y + EDA KA+ +NG + K+I V A+ E
Sbjct: 227 SGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVE 271
Score = 71 (30.1 bits), Expect = 9.8e-07, Sum P(2) = 9.8e-07
Identities = 11/38 (28%), Positives = 24/38 (63%)
Query: 79 KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
+G NLY+ L + ++L FSP+G I +++++ ++
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED 329
>MGI|MGI:1861776 [details] [associations]
symbol:Rbms2 "RNA binding motif, single stranded interacting
protein 2" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1861776 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GeneTree:ENSGT00630000089747
eggNOG:NOG320163 HOGENOM:HOG000008467 HOVERGEN:HBG053108
OrthoDB:EOG469QV2 CTD:5939 OMA:SQQMAPP EMBL:BC021627 EMBL:AK054482
IPI:IPI00121520 RefSeq:NP_001034169.1 RefSeq:NP_062685.2
UniGene:Mm.42247 ProteinModelPortal:Q8VC70 SMR:Q8VC70 STRING:Q8VC70
PhosphoSite:Q8VC70 PRIDE:Q8VC70 Ensembl:ENSMUST00000092033
GeneID:56516 KEGG:mmu:56516 UCSC:uc007hlm.1 InParanoid:Q8VC70
ChiTaRS:RBMS2 NextBio:312832 Bgee:Q8VC70 Genevestigator:Q8VC70
GermOnline:ENSMUSG00000040043 Uniprot:Q8VC70
Length = 383
Score = 155 (59.6 bits), Expect = 1.4e-10, P = 1.4e-10
Identities = 34/103 (33%), Positives = 55/103 (53%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA+ L +Q + K P+ NLY+S LP
Sbjct: 94 TTNKCKGYGFVDFDSPSSAQKAVTALKASGVQAQMAKQQEQDPT-------NLYISNLPL 146
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE + P+G++I++RIL D G ++ + E+
Sbjct: 147 SMDEQELEGMLKPFGQVISTRILRDTSGASRGVGFARMESTEK 189
>UNIPROTKB|E2RQC8 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:AAEX03008681
ProteinModelPortal:E2RQC8 PRIDE:E2RQC8 Ensembl:ENSCAFT00000000885
NextBio:20898275 Uniprot:E2RQC8
Length = 596
Score = 158 (60.7 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 32/100 (32%), Positives = 61/100 (61%)
Query: 25 ICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGAN 82
+C +I T +SLGY +VN+ +P DAE+A++T+N ++ K +++ +++ PS N
Sbjct: 42 VCRDMI-TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGN 100
Query: 83 LYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+++ L K + + L FS +G I++ +++CD ENG
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 121 (47.7 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 30/111 (27%), Positives = 53/111 (47%)
Query: 20 FSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSES 77
F + C + S GYGFV++ E AE+AI +NG+ L ++ + V +R E+
Sbjct: 122 FGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 78 IKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
GA N+Y+ + M + L+ LF +G ++ +++ D G
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKG 232
Score = 96 (38.9 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
+ +S G+GFV++ R EDA+KA++ +NG L K I V A+ E
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVE 271
Score = 70 (29.7 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 79 KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+G NLYV L + + L FSP+G I +++++ +
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME 328
>UNIPROTKB|H0YAP2 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519622
Uniprot:H0YAP2
Length = 131
Score = 96 (38.9 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
+ +S G+GFV++ R EDA+KA++ +NG L K I V A+ E
Sbjct: 25 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVE 69
Score = 64 (27.6 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 79 KGANLYVSGLPKHMSQQELESLFSPYGRIITSR 111
+G NLYV L + + L FSP+G I +++
Sbjct: 90 QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAK 122
>UNIPROTKB|Q6IP09 [details] [associations]
symbol:pabpc1-b "Polyadenylate-binding protein 1-B"
species:8355 "Xenopus laevis" [GO:0005844 "polysome" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043621
"protein self-association" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0005844
GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC072110 EMBL:BC108462 RefSeq:NP_001085069.1
UniGene:Xl.60751 ProteinModelPortal:Q6IP09 SMR:Q6IP09 PRIDE:Q6IP09
GeneID:432140 KEGG:xla:432140 CTD:432140 Xenbase:XB-GENE-6255999
Uniprot:Q6IP09
Length = 633
Score = 158 (60.7 bits), Expect = 1.7e-10, P = 1.7e-10
Identities = 32/100 (32%), Positives = 61/100 (61%)
Query: 25 ICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGAN 82
+C +I T +SLGY +VN+ +P DAE+A++T+N ++ K +++ +++ PS N
Sbjct: 42 VCRDMI-TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGN 100
Query: 83 LYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+++ L K + + L FS +G I++ +++CD ENG
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 121 (47.7 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 30/111 (27%), Positives = 54/111 (48%)
Query: 20 FSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSES 77
F + C + S GYGFV++ E AE+AI+ +NG+ L ++ + V +R E+
Sbjct: 122 FGNILSCKVVCDENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 78 IKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
GA N+Y+ + M + L+ F YG ++ +++ D+ G
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKSRG 232
Score = 93 (37.8 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 19/43 (44%), Positives = 28/43 (65%)
Query: 34 QSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
+S G+GFV++ R EDA+KA++ +NG L K I V A+ E
Sbjct: 229 KSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKVE 271
Score = 67 (28.6 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 79 KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+G NLYV L + + L F+P+G I +++++ +
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFTPFGSITSAKVMME 328
>UNIPROTKB|P61286 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9913 "Bos taurus" [GO:0005515 "protein binding"
evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000184 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0071013
GO:GO:0010494 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AJ401269 EMBL:BC102365 IPI:IPI00705440 RefSeq:NP_776993.1
UniGene:Bt.53579 ProteinModelPortal:P61286 SMR:P61286 PRIDE:P61286
Ensembl:ENSBTAT00000064237 GeneID:282296 KEGG:bta:282296 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
BindingDB:P61286 NextBio:20806097 GO:GO:2000623 Uniprot:P61286
Length = 636
Score = 158 (60.7 bits), Expect = 1.7e-10, P = 1.7e-10
Identities = 32/100 (32%), Positives = 61/100 (61%)
Query: 25 ICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGAN 82
+C +I T +SLGY +VN+ +P DAE+A++T+N ++ K +++ +++ PS N
Sbjct: 42 VCRDMI-TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGN 100
Query: 83 LYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+++ L K + + L FS +G I++ +++CD ENG
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 121 (47.7 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 30/111 (27%), Positives = 53/111 (47%)
Query: 20 FSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSES 77
F + C + S GYGFV++ E AE+AI +NG+ L ++ + V +R E+
Sbjct: 122 FGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 78 IKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
GA N+Y+ + M + L+ LF +G ++ +++ D G
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKG 232
Score = 96 (38.9 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
+ +S G+GFV++ R EDA+KA++ +NG L K I V A+ E
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVE 271
Score = 70 (29.7 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 79 KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+G NLYV L + + L FSP+G I +++++ +
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME 328
>UNIPROTKB|J9P326 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
OMA:TITSAKX EMBL:AAEX03008681 RefSeq:XP_856708.1
ProteinModelPortal:J9P326 Ensembl:ENSCAFT00000042991 GeneID:612751
KEGG:cfa:612751 Uniprot:J9P326
Length = 636
Score = 158 (60.7 bits), Expect = 1.7e-10, P = 1.7e-10
Identities = 32/100 (32%), Positives = 61/100 (61%)
Query: 25 ICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGAN 82
+C +I T +SLGY +VN+ +P DAE+A++T+N ++ K +++ +++ PS N
Sbjct: 42 VCRDMI-TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGN 100
Query: 83 LYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+++ L K + + L FS +G I++ +++CD ENG
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 121 (47.7 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 30/111 (27%), Positives = 53/111 (47%)
Query: 20 FSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSES 77
F + C + S GYGFV++ E AE+AI +NG+ L ++ + V +R E+
Sbjct: 122 FGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 78 IKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
GA N+Y+ + M + L+ LF +G ++ +++ D G
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKG 232
Score = 96 (38.9 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
+ +S G+GFV++ R EDA+KA++ +NG L K I V A+ E
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVE 271
Score = 70 (29.7 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 79 KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+G NLYV L + + L FSP+G I +++++ +
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME 328
>UNIPROTKB|P11940 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IDA;TAS]
[GO:0006378 "mRNA polyadenylation" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA;TAS] [GO:0048255 "mRNA stabilization"
evidence=TAS] [GO:0008494 "translation activator activity"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008022 "protein C-terminus binding" evidence=IPI] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:2000623 "negative
regulation of nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0045727 "positive regulation of
translation" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_17015 InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 GO:GO:0000184 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0008494 GO:GO:0048255
GO:GO:0000398 GO:GO:0071013 PDB:3KTR PDBsum:3KTR GO:GO:0010494
eggNOG:COG0724 GO:GO:0000289 GO:GO:0008143 HOVERGEN:HBG002295
Reactome:REACT_1762 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 PDB:3KUI PDBsum:3KUI
PDB:2RQG PDB:2RQH PDBsum:2RQG PDBsum:2RQH PDB:3KUJ PDBsum:3KUJ
PDB:4F02 PDBsum:4F02 PDB:3PTH PDBsum:3PTH PDB:3PKN PDBsum:3PKN
CTD:26986 OMA:TITSAKX OrthoDB:EOG40ZQX5 GO:GO:2000623 EMBL:Y00345
EMBL:U68104 EMBL:U68093 EMBL:U68094 EMBL:U68095 EMBL:U68097
EMBL:U68098 EMBL:U68099 EMBL:U68100 EMBL:U68101 EMBL:U68102
EMBL:U68103 EMBL:AP001205 EMBL:BC015958 EMBL:BC023520 EMBL:Z48501
IPI:IPI00008524 IPI:IPI00410017 PIR:A93668 PIR:S52491
RefSeq:NP_002559.2 UniGene:Hs.387804 PDB:1CVJ PDB:1G9L PDB:1JGN
PDB:1JH4 PDB:2K8G PDB:2X04 PDB:3KTP PDB:3KUR PDB:3KUS PDB:3KUT
PDB:4F25 PDB:4F26 PDBsum:1CVJ PDBsum:1G9L PDBsum:1JGN PDBsum:1JH4
PDBsum:2K8G PDBsum:2X04 PDBsum:3KTP PDBsum:3KUR PDBsum:3KUS
PDBsum:3KUT PDBsum:4F25 PDBsum:4F26 ProteinModelPortal:P11940
SMR:P11940 DIP:DIP-31613N IntAct:P11940 MINT:MINT-96210
STRING:P11940 PhosphoSite:P11940 DMDM:3183544 PaxDb:P11940
PRIDE:P11940 DNASU:26986 Ensembl:ENST00000318607 GeneID:26986
KEGG:hsa:26986 UCSC:uc003yjs.1 GeneCards:GC08M101715 HGNC:HGNC:8554
HPA:CAB011536 HPA:HPA045423 MIM:604679 neXtProt:NX_P11940
PharmGKB:PA32880 InParanoid:P11940 PhylomeDB:P11940
BindingDB:P11940 ChEMBL:CHEMBL1293286 ChiTaRS:PABPC1
EvolutionaryTrace:P11940 GenomeRNAi:26986 NextBio:49454
PMAP-CutDB:P11940 ArrayExpress:P11940 Bgee:P11940 CleanEx:HS_PABPC1
Genevestigator:P11940 GermOnline:ENSG00000070756 Uniprot:P11940
Length = 636
Score = 158 (60.7 bits), Expect = 1.7e-10, P = 1.7e-10
Identities = 32/100 (32%), Positives = 61/100 (61%)
Query: 25 ICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGAN 82
+C +I T +SLGY +VN+ +P DAE+A++T+N ++ K +++ +++ PS N
Sbjct: 42 VCRDMI-TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGN 100
Query: 83 LYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+++ L K + + L FS +G I++ +++CD ENG
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 121 (47.7 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 30/111 (27%), Positives = 53/111 (47%)
Query: 20 FSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSES 77
F + C + S GYGFV++ E AE+AI +NG+ L ++ + V +R E+
Sbjct: 122 FGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 78 IKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
GA N+Y+ + M + L+ LF +G ++ +++ D G
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKG 232
Score = 96 (38.9 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
+ +S G+GFV++ R EDA+KA++ +NG L K I V A+ E
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVE 271
Score = 70 (29.7 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 79 KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+G NLYV L + + L FSP+G I +++++ +
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME 328
>UNIPROTKB|F2Z557 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
EMBL:CU302394 RefSeq:XP_001927782.1 UniGene:Ssc.41568
ProteinModelPortal:F2Z557 SMR:F2Z557 PRIDE:F2Z557
Ensembl:ENSSSCT00000006652 GeneID:100153958 KEGG:ssc:100153958
Uniprot:F2Z557
Length = 636
Score = 158 (60.7 bits), Expect = 1.7e-10, P = 1.7e-10
Identities = 32/100 (32%), Positives = 61/100 (61%)
Query: 25 ICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGAN 82
+C +I T +SLGY +VN+ +P DAE+A++T+N ++ K +++ +++ PS N
Sbjct: 42 VCRDMI-TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGN 100
Query: 83 LYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+++ L K + + L FS +G I++ +++CD ENG
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 121 (47.7 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 30/111 (27%), Positives = 53/111 (47%)
Query: 20 FSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSES 77
F + C + S GYGFV++ E AE+AI +NG+ L ++ + V +R E+
Sbjct: 122 FGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 78 IKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
GA N+Y+ + M + L+ LF +G ++ +++ D G
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKG 232
Score = 96 (38.9 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
+ +S G+GFV++ R EDA+KA++ +NG L K I V A+ E
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVE 271
Score = 70 (29.7 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 79 KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+G NLYV L + + L FSP+G I +++++ +
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME 328
>UNIPROTKB|Q5R8F7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9601 "Pongo abelii" [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0010494
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HSSP:P11940 GO:GO:2000623 EMBL:CR859795
RefSeq:NP_001128842.1 UniGene:Pab.18910 ProteinModelPortal:Q5R8F7
SMR:Q5R8F7 PRIDE:Q5R8F7 GeneID:100189758 KEGG:pon:100189758
InParanoid:Q5R8F7 Uniprot:Q5R8F7
Length = 636
Score = 158 (60.7 bits), Expect = 1.7e-10, P = 1.7e-10
Identities = 32/100 (32%), Positives = 61/100 (61%)
Query: 25 ICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGAN 82
+C +I T +SLGY +VN+ +P DAE+A++T+N ++ K +++ +++ PS N
Sbjct: 42 VCRDMI-TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGN 100
Query: 83 LYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+++ L K + + L FS +G I++ +++CD ENG
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 121 (47.7 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 30/111 (27%), Positives = 53/111 (47%)
Query: 20 FSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSES 77
F + C + S GYGFV++ E AE+AI +NG+ L ++ + V +R E+
Sbjct: 122 FGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 78 IKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
GA N+Y+ + M + L+ LF +G ++ +++ D G
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKG 232
Score = 96 (38.9 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
+ +S G+GFV++ R EDA+KA++ +NG L K I V A+ E
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVE 271
Score = 70 (29.7 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 79 KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+G NLYV L + + L FSP+G I +++++ +
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME 328
>MGI|MGI:1349722 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
MGI:MGI:1349722 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 EMBL:CH466541 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 ChiTaRS:PABPC1 EMBL:X65553 EMBL:AK044829
EMBL:AK133196 EMBL:AK159703 EMBL:AK159733 EMBL:AK160968
EMBL:AK161123 EMBL:AK161671 EMBL:AK168466 EMBL:BC003870
EMBL:BC011207 EMBL:BC023145 EMBL:BC046233 IPI:IPI00124287
PIR:I48718 RefSeq:NP_032800.2 UniGene:Mm.371570
ProteinModelPortal:P29341 SMR:P29341 DIP:DIP-32127N IntAct:P29341
STRING:P29341 PhosphoSite:P29341 REPRODUCTION-2DPAGE:P29341
PaxDb:P29341 PRIDE:P29341 Ensembl:ENSMUST00000001809 GeneID:18458
KEGG:mmu:18458 InParanoid:Q99L36 NextBio:294152 Bgee:P29341
CleanEx:MM_PABPC1 Genevestigator:P29341
GermOnline:ENSMUSG00000022283 Uniprot:P29341
Length = 636
Score = 158 (60.7 bits), Expect = 1.7e-10, P = 1.7e-10
Identities = 32/100 (32%), Positives = 61/100 (61%)
Query: 25 ICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGAN 82
+C +I T +SLGY +VN+ +P DAE+A++T+N ++ K +++ +++ PS N
Sbjct: 42 VCRDMI-TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGN 100
Query: 83 LYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+++ L K + + L FS +G I++ +++CD ENG
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 121 (47.7 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 30/111 (27%), Positives = 53/111 (47%)
Query: 20 FSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSES 77
F + C + S GYGFV++ E AE+AI +NG+ L ++ + V +R E+
Sbjct: 122 FGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 78 IKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
GA N+Y+ + M + L+ LF +G ++ +++ D G
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKG 232
Score = 96 (38.9 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
+ +S G+GFV++ R EDA+KA++ +NG L K I V A+ E
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVE 271
Score = 70 (29.7 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 79 KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+G NLYV L + + L FSP+G I +++++ +
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME 328
>RGD|619838 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO;ISS]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO;ISS] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO;ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:619838 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 EMBL:AJ298278 EMBL:BC083176 IPI:IPI00189074
RefSeq:NP_599180.1 UniGene:Rn.127813 UniGene:Rn.29024
ProteinModelPortal:Q9EPH8 SMR:Q9EPH8 IntAct:Q9EPH8
MINT:MINT-4576919 STRING:Q9EPH8 PhosphoSite:Q9EPH8 PRIDE:Q9EPH8
Ensembl:ENSRNOT00000012775 GeneID:171350 KEGG:rno:171350
UCSC:RGD:619838 InParanoid:Q9EPH8 NextBio:622119
Genevestigator:Q9EPH8 GermOnline:ENSRNOG00000008639 Uniprot:Q9EPH8
Length = 636
Score = 158 (60.7 bits), Expect = 1.7e-10, P = 1.7e-10
Identities = 32/100 (32%), Positives = 61/100 (61%)
Query: 25 ICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGAN 82
+C +I T +SLGY +VN+ +P DAE+A++T+N ++ K +++ +++ PS N
Sbjct: 42 VCRDMI-TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGN 100
Query: 83 LYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+++ L K + + L FS +G I++ +++CD ENG
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 121 (47.7 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 30/111 (27%), Positives = 53/111 (47%)
Query: 20 FSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSES 77
F + C + S GYGFV++ E AE+AI +NG+ L ++ + V +R E+
Sbjct: 122 FGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 78 IKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
GA N+Y+ + M + L+ LF +G ++ +++ D G
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKG 232
Score = 96 (38.9 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
+ +S G+GFV++ R EDA+KA++ +NG L K I V A+ E
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVE 271
Score = 70 (29.7 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 79 KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+G NLYV L + + L FSP+G I +++++ +
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME 328
>ZFIN|ZDB-GENE-030131-9663 [details] [associations]
symbol:pabpc4 "poly(A) binding protein,
cytoplasmic 4 (inducible form)" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
ZFIN:ZDB-GENE-030131-9663 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:8761 OrthoDB:EOG4T1HM1
EMBL:BC053126 IPI:IPI00489290 RefSeq:NP_958453.1 UniGene:Dr.16284
ProteinModelPortal:Q7T3G5 SMR:Q7T3G5 STRING:Q7T3G5 PRIDE:Q7T3G5
GeneID:321035 KEGG:dre:321035 InParanoid:Q7T3G5 OMA:NGMEASA
NextBio:20807204 ArrayExpress:Q7T3G5 Bgee:Q7T3G5 Uniprot:Q7T3G5
Length = 637
Score = 158 (60.7 bits), Expect = 1.7e-10, P = 1.7e-10
Identities = 35/105 (33%), Positives = 64/105 (60%)
Query: 25 ICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGAN 82
+C +I T +SLGY +VN+ +P DAE+A++T+N ++ K I++ +++ PS N
Sbjct: 43 VCRDMI-TRRSLGYAYVNFQQPADAERALDTMNFDVVKGKPIRIMWSQRDPSLRKSGVGN 101
Query: 83 LYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG-KYYS 126
+++ L K + + L FS +G I++ +++CD ENG K Y+
Sbjct: 102 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD----ENGSKGYA 142
Score = 118 (46.6 bits), Expect = 3.3e-06, P = 3.3e-06
Identities = 29/111 (26%), Positives = 52/111 (46%)
Query: 20 FSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSES 77
F + C + S GY FV++ + A++AI +NG+ L ++ + V +R E+
Sbjct: 123 FGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREA 182
Query: 78 IKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
GA N+Y+ M Q L+ LF YG+ ++ +++ D G
Sbjct: 183 EMGAKAKEFTNVYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDPTGKSRG 233
Score = 104 (41.7 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 20/45 (44%), Positives = 28/45 (62%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
T +S G+GFV+Y + EDA KA+ +NG L KT+ V A+ E
Sbjct: 228 TGKSRGFGFVSYEKHEDANKAVEEMNGTELNGKTVFVGRAQKKME 272
Score = 70 (29.7 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 11/37 (29%), Positives = 23/37 (62%)
Query: 79 KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+G NLY+ L + ++L FSP+G I +++++ +
Sbjct: 293 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE 329
>UNIPROTKB|C9J9B2 [details] [associations]
symbol:RBMS3 "RNA-binding motif,
single-stranded-interacting protein 3" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
HOGENOM:HOG000008467 EMBL:AC012262 EMBL:AC021068 EMBL:AC092795
EMBL:AC092796 EMBL:AC097633 EMBL:AC098650 EMBL:AC099048
HGNC:HGNC:13427 ChiTaRS:RBMS3 IPI:IPI00924610
ProteinModelPortal:C9J9B2 SMR:C9J9B2 STRING:C9J9B2
Ensembl:ENST00000445033 ArrayExpress:C9J9B2 Bgee:C9J9B2
Uniprot:C9J9B2
Length = 264
Score = 150 (57.9 bits), Expect = 1.7e-10, P = 1.7e-10
Identities = 35/103 (33%), Positives = 56/103 (54%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T Q GYGFV++ P A+KA+ +L +Q + K P+ NLY+S LP
Sbjct: 97 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPI 149
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G +I++RIL D G ++ + E+
Sbjct: 150 SMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEK 192
>UNIPROTKB|I3LS00 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000623 "negative regulation of nuclear-transcribed
mRNA catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0071013 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
GO:GO:2000623 EMBL:CU302394 Ensembl:ENSSSCT00000032533
Uniprot:I3LS00
Length = 647
Score = 158 (60.7 bits), Expect = 1.7e-10, P = 1.7e-10
Identities = 32/100 (32%), Positives = 61/100 (61%)
Query: 25 ICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGAN 82
+C +I T +SLGY +VN+ +P DAE+A++T+N ++ K +++ +++ PS N
Sbjct: 42 VCRDMI-TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGN 100
Query: 83 LYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+++ L K + + L FS +G I++ +++CD ENG
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 121 (47.7 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 30/111 (27%), Positives = 53/111 (47%)
Query: 20 FSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSES 77
F + C + S GYGFV++ E AE+AI +NG+ L ++ + V +R E+
Sbjct: 122 FGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 78 IKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
GA N+Y+ + M + L+ LF +G ++ +++ D G
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKG 232
Score = 96 (38.9 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
+ +S G+GFV++ R EDA+KA++ +NG L K I V A+ E
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVE 271
Score = 70 (29.7 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 79 KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+G NLYV L + + L FSP+G I +++++ +
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME 328
>UNIPROTKB|F1PQV8 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:140886 OMA:FSEYGPT
EMBL:AAEX03026633 RefSeq:XP_549122.2 ProteinModelPortal:F1PQV8
Ensembl:ENSCAFT00000027652 GeneID:492002 KEGG:cfa:492002
Uniprot:F1PQV8
Length = 382
Score = 154 (59.3 bits), Expect = 1.8e-10, P = 1.8e-10
Identities = 30/95 (31%), Positives = 54/95 (56%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGA--NLYVSGLP 89
T LGYG+VN+ P DAE A+NT+N + K ++ +++P K N+++ L
Sbjct: 55 TRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLD 114
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENGKY 124
K + + L LFS +G I++ +++CD+ ++ Y
Sbjct: 115 KSIDNRALFYLFSAFGNILSCKVVCDDNGSKGYAY 149
>UNIPROTKB|Q96DU9 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471115 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AJ278963 EMBL:AK290105
EMBL:AL662874 EMBL:BC063113 EMBL:AL122118 IPI:IPI00061206
PIR:T34543 RefSeq:NP_543022.1 UniGene:Hs.246590
ProteinModelPortal:Q96DU9 SMR:Q96DU9 IntAct:Q96DU9 STRING:Q96DU9
PhosphoSite:Q96DU9 DMDM:28201851 PaxDb:Q96DU9 PRIDE:Q96DU9
DNASU:140886 Ensembl:ENST00000312600 GeneID:140886 KEGG:hsa:140886
UCSC:uc004efg.3 CTD:140886 GeneCards:GC0XP090689 HGNC:HGNC:13629
HPA:HPA000164 HPA:HPA000165 MIM:300407 neXtProt:NX_Q96DU9
PharmGKB:PA32884 InParanoid:Q96DU9 OMA:FSEYGPT PhylomeDB:Q96DU9
GenomeRNAi:140886 NextBio:84542 ArrayExpress:Q96DU9 Bgee:Q96DU9
CleanEx:HS_PABPC5 Genevestigator:Q96DU9 GermOnline:ENSG00000174740
Uniprot:Q96DU9
Length = 382
Score = 154 (59.3 bits), Expect = 1.8e-10, P = 1.8e-10
Identities = 30/95 (31%), Positives = 54/95 (56%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGA--NLYVSGLP 89
T LGYG+VN+ P DAE A+NT+N + K ++ +++P K N+++ L
Sbjct: 55 TRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLD 114
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENGKY 124
K + + L LFS +G I++ +++CD+ ++ Y
Sbjct: 115 KSIDNRALFYLFSAFGNILSCKVVCDDNGSKGYAY 149
>RGD|2322083 [details] [associations]
symbol:LOC100360473 "poly A binding protein, cytoplasmic 5-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:2322083 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K13126 EMBL:CH473969 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT IPI:IPI00369761 RefSeq:NP_001103836.1
UniGene:Rn.218841 Ensembl:ENSRNOT00000004462 GeneID:688518
KEGG:rno:688518 OrthoDB:EOG4DZ1VH NextBio:736678 Uniprot:D4A5H0
Length = 382
Score = 154 (59.3 bits), Expect = 1.8e-10, P = 1.8e-10
Identities = 30/95 (31%), Positives = 54/95 (56%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGA--NLYVSGLP 89
T LGYG+VN+ P DAE A+NT+N + K ++ +++P K N+++ L
Sbjct: 55 TRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDHLRKSGVGNIFIKNLD 114
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENGKY 124
K + + L LFS +G I++ +++CD+ ++ Y
Sbjct: 115 KSIDNRALFYLFSAFGNILSCKVVCDDNGSKGYAY 149
>ZFIN|ZDB-GENE-040801-51 [details] [associations]
symbol:rbms2b "RNA binding motif, single stranded
interacting protein 2b" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040801-51 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00630000089747
eggNOG:NOG320163 HOGENOM:HOG000008467 HOVERGEN:HBG053108
OrthoDB:EOG469QV2 OMA:GHQMAPP EMBL:BX005414 EMBL:BC076435
IPI:IPI00482514 RefSeq:NP_001003541.1 UniGene:Dr.33950 SMR:Q6DGB5
Ensembl:ENSDART00000060059 GeneID:445147 KEGG:dre:445147
InParanoid:Q6DGB5 NextBio:20831910 Uniprot:Q6DGB5
Length = 400
Score = 154 (59.3 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 35/103 (33%), Positives = 56/103 (54%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA+ L +Q + K P+ NLY+S LP
Sbjct: 94 TTNKCKGYGFVDFDSPASAQKAVTALKASGVQAQMAKQQEQDPT-------NLYISNLPL 146
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELES+ P+ ++I++RIL D T G ++ + E+
Sbjct: 147 SMDEQELESMLKPFSQVISTRILRDANGTSRGVGFARMESTEK 189
>UNIPROTKB|F1N4Q4 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
KO:K13126 TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT EMBL:DAAA02070194 IPI:IPI00700504
RefSeq:NP_001179218.1 UniGene:Bt.60242 ProteinModelPortal:F1N4Q4
Ensembl:ENSBTAT00000026566 GeneID:511286 KEGG:bta:511286
NextBio:20869865 Uniprot:F1N4Q4
Length = 382
Score = 153 (58.9 bits), Expect = 2.4e-10, P = 2.4e-10
Identities = 30/95 (31%), Positives = 54/95 (56%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGA--NLYVSGLP 89
T LGYG+VN+ P DAE A+NT+N + K ++ +++P K N+++ L
Sbjct: 55 TRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGIGNIFIKNLD 114
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENGKY 124
K + + L LFS +G I++ +++CD+ ++ Y
Sbjct: 115 KSIDNRALFYLFSAFGSILSCKVVCDDNGSKGYAY 149
>RGD|1566367 [details] [associations]
symbol:Pabpc1l2a "poly(A) binding protein, cytoplasmic 1-like
2A" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1566367 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00640000091232
IPI:IPI00769098 Ensembl:ENSRNOT00000029100 Uniprot:F1M8Y9
Length = 200
Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 26/86 (30%), Positives = 53/86 (61%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VNY +P DA++A+ T+N + + +++ +++ PS N+++ L
Sbjct: 39 TRRSLGYAYVNYQQPVDAKRALETMNFDVINGRPVRIMWSQRDPSLRKSGVGNVFIKNLG 98
Query: 90 KHMSQQELESLFSPYGRIITSRILCD 115
K + + L ++FS +G I++ ++ CD
Sbjct: 99 KTIDNKALYNIFSAFGNILSCKVACD 124
>MGI|MGI:1861774 [details] [associations]
symbol:Rbms1 "RNA binding motif, single stranded interacting
protein 1" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1861774 GO:GO:0005634
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 Gene3D:3.30.70.330
GO:GO:0003723 GeneTree:ENSGT00630000089747 CTD:5937
eggNOG:NOG320163 HOGENOM:HOG000008467 HOVERGEN:HBG053108
OrthoDB:EOG469QV2 ChiTaRS:RBMS1 EMBL:AB026582 EMBL:AB026569
EMBL:AK135280 EMBL:AK147109 EMBL:AL928581 EMBL:AL929012
EMBL:BC016501 EMBL:BC056609 EMBL:BC057866 IPI:IPI00127323
IPI:IPI00462043 IPI:IPI00990210 RefSeq:NP_001135403.1
RefSeq:NP_064692.2 UniGene:Mm.259667 UniGene:Mm.482338
ProteinModelPortal:Q91W59 SMR:Q91W59 PhosphoSite:Q91W59
PaxDb:Q91W59 PRIDE:Q91W59 Ensembl:ENSMUST00000028347
Ensembl:ENSMUST00000112509 GeneID:56878 KEGG:mmu:56878
UCSC:uc008jus.2 UCSC:uc008jut.2 InParanoid:Q91W59 NextBio:313461
Bgee:Q91W59 Genevestigator:Q91W59 GermOnline:ENSMUSG00000026970
Uniprot:Q91W59
Length = 403
Score = 153 (58.9 bits), Expect = 2.6e-10, P = 2.6e-10
Identities = 33/103 (32%), Positives = 58/103 (56%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA++ L +Q + K P+ NLY+S LP
Sbjct: 98 ATNKCKGYGFVDFDSPAAAQKAVSALKANGVQAQMAKQQEQDPT-------NLYISNLPL 150
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G++I++R+L D+ G ++ + E+
Sbjct: 151 SMDEQELENMLKPFGQVISTRVLRDSSGASRGVGFARMESTEK 193
>UNIPROTKB|E7EQV3 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00977833
ProteinModelPortal:E7EQV3 SMR:E7EQV3 Ensembl:ENST00000519004
ArrayExpress:E7EQV3 Bgee:E7EQV3 Uniprot:E7EQV3
Length = 591
Score = 155 (59.6 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 30/93 (32%), Positives = 57/93 (61%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ K +++ +++ PS N+++ L
Sbjct: 3 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLD 62
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 63 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 91
Score = 121 (47.7 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 30/111 (27%), Positives = 53/111 (47%)
Query: 20 FSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSES 77
F + C + S GYGFV++ E AE+AI +NG+ L ++ + V +R E+
Sbjct: 77 FGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 136
Query: 78 IKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
GA N+Y+ + M + L+ LF +G ++ +++ D G
Sbjct: 137 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKG 187
Score = 96 (38.9 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
+ +S G+GFV++ R EDA+KA++ +NG L K I V A+ E
Sbjct: 182 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVE 226
Score = 70 (29.7 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 79 KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+G NLYV L + + L FSP+G I +++++ +
Sbjct: 247 QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME 283
>UNIPROTKB|P20965 [details] [associations]
symbol:pabpc1-a "Polyadenylate-binding protein 1-A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005844 "polysome" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0005844 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:M27072 EMBL:X57483
EMBL:BC052100 PIR:A32323 RefSeq:NP_001080204.1 UniGene:Xl.35547
ProteinModelPortal:P20965 SMR:P20965 PRIDE:P20965 GeneID:379896
KEGG:xla:379896 CTD:379896 Xenbase:XB-GENE-963463 Uniprot:P20965
Length = 633
Score = 155 (59.6 bits), Expect = 3.5e-10, P = 3.5e-10
Identities = 31/100 (31%), Positives = 61/100 (61%)
Query: 25 ICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGAN 82
+C +I T +SLGY +VN+ +P DAE+A++T+N ++ + +++ +++ PS N
Sbjct: 42 VCRDMI-TRRSLGYAYVNFQQPADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGN 100
Query: 83 LYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+++ L K + + L FS +G I++ +++CD ENG
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 125 (49.1 bits), Expect = 5.8e-07, P = 5.8e-07
Identities = 34/118 (28%), Positives = 59/118 (50%)
Query: 20 FSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSES 77
F + C + S GYGFV++ E AE+AI+ +NG+ L ++ + V +R E+
Sbjct: 122 FGNILSCKVVCDENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 78 IKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLG 129
GA N+Y+ M+ + L+ +F YG ++ +++ D +NGK G G
Sbjct: 182 ELGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTD----DNGKS-KGFG 234
Score = 89 (36.4 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 17/43 (39%), Positives = 29/43 (67%)
Query: 34 QSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
+S G+GFV++ R EDA+KA++ +NG + K++ V A+ E
Sbjct: 229 KSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVE 271
Score = 64 (27.6 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 79 KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+G NLYV L + + L F P+G I +++++ +
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFLPFGTITSAKVMME 328
>ZFIN|ZDB-GENE-050308-1 [details] [associations]
symbol:pabpc1b "poly A binding protein, cytoplasmic 1
b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-050308-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CU468682 EMBL:CU468824
EMBL:BC059662 EMBL:BC063948 IPI:IPI00493464 RefSeq:NP_957176.1
UniGene:Dr.99377 SMR:Q6P3L1 STRING:Q6P3L1
Ensembl:ENSDART00000032474 GeneID:393856 KEGG:dre:393856 CTD:393856
InParanoid:Q6P3L1 NextBio:20814840 Uniprot:Q6P3L1
Length = 634
Score = 155 (59.6 bits), Expect = 3.5e-10, P = 3.5e-10
Identities = 31/100 (31%), Positives = 61/100 (61%)
Query: 25 ICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGAN 82
+C +I T +SLGY +VN+ +P DAE+A++T+N ++ + +++ +++ PS N
Sbjct: 42 VCRDMI-TRRSLGYAYVNFQQPADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGN 100
Query: 83 LYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+++ L K + + L FS +G I++ +++CD ENG
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 134 (52.2 bits), Expect = 6.3e-08, P = 6.3e-08
Identities = 35/112 (31%), Positives = 57/112 (50%)
Query: 20 FSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSES 77
F + C + S GYGFV++ E AE+AI +NG+ L ++ + V +R E+
Sbjct: 122 FGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 78 IKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGK 123
GA N+Y+ + M +L+ +FS YG ++ R++ D ENGK
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTD----ENGK 229
Score = 91 (37.1 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 25 ICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
I V +S G+GFV++ R EDA++A++ +NG + K I V A+ E
Sbjct: 220 IRVMTDENGKSRGFGFVSFERHEDAQRAVDEMNGKEMNGKLIYVGRAQKKVE 271
Score = 74 (31.1 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 79 KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+G NLYV L + + L FSP+G I +++++ D
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMD 328
>ZFIN|ZDB-GENE-060929-244 [details] [associations]
symbol:rbms3 "RNA binding motif, single stranded
interacting protein" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-060929-244
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GeneTree:ENSGT00630000089747 EMBL:CR626944 EMBL:CR848052
EMBL:CR848810 IPI:IPI00920287 Ensembl:ENSDART00000125804
Ensembl:ENSDART00000136719 Uniprot:F1QEI2
Length = 415
Score = 152 (58.6 bits), Expect = 3.6e-10, P = 3.6e-10
Identities = 35/103 (33%), Positives = 56/103 (54%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T Q GYGFV++ P A+KA+ +L +Q + K P+ NLY+S LP
Sbjct: 92 NTNQCKGYGFVDFDSPAAAQKAVASLKASGVQAQMAKQQEQDPT-------NLYISNLPV 144
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G +I++RIL D G ++ + E+
Sbjct: 145 SMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEK 187
>UNIPROTKB|E1BTJ0 [details] [associations]
symbol:RBMS3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0043231 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GeneTree:ENSGT00630000089747
OMA:QQMTVET EMBL:AADN02001158 EMBL:AADN02001159 EMBL:AADN02001160
EMBL:AADN02001161 EMBL:AADN02001162 IPI:IPI00583817
Ensembl:ENSGALT00000018654 Uniprot:E1BTJ0
Length = 433
Score = 151 (58.2 bits), Expect = 5.0e-10, P = 5.0e-10
Identities = 35/103 (33%), Positives = 56/103 (54%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T Q GYGFV++ P A+KA+ +L +Q + K P+ NLY+S LP
Sbjct: 96 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPV 148
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G +I++RIL D G ++ + E+
Sbjct: 149 SMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEK 191
>UNIPROTKB|Q4VY17 [details] [associations]
symbol:PABPC1L "EPAB" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:AL008725 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
HOVERGEN:HBG002295 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
EMBL:AL109839 UniGene:Hs.641481 HGNC:HGNC:15797 EMBL:EU190483
IPI:IPI00306870 SMR:Q4VY17 STRING:Q4VY17 Ensembl:ENST00000217074
Ensembl:ENST00000537323 Uniprot:Q4VY17
Length = 330
Score = 148 (57.2 bits), Expect = 5.9e-10, P = 5.9e-10
Identities = 32/90 (35%), Positives = 57/90 (63%)
Query: 35 SLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSESIKGA------NLYVS 86
S G+GFV++ E A++AINT+NG+ L ++ + V + +R E+ GA N+YV
Sbjct: 137 SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVK 196
Query: 87 GLPKHMSQQELESLFSPYGRIITSRILCDN 116
LP + +Q L+ LFS +G++++ +++ DN
Sbjct: 197 NLPVDVDEQGLQDLFSQFGKMLSVKVMRDN 226
Score = 146 (56.5 bits), Expect = 9.9e-10, P = 9.9e-10
Identities = 25/88 (28%), Positives = 53/88 (60%)
Query: 30 ISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSG 87
++T +SLGY ++N+ +P DAE+A++T+N L+ + I++ +++ P N+++
Sbjct: 46 VATRRSLGYAYINFQQPADAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKN 105
Query: 88 LPKHMSQQELESLFSPYGRIITSRILCD 115
L + + L FS +G I++ ++ CD
Sbjct: 106 LEDSIDNKALYDTFSTFGNILSCKVACD 133
>RGD|1588240 [details] [associations]
symbol:Rbms3 "RNA binding motif, single stranded interacting
protein 3" species:10116 "Rattus norvegicus" [GO:0043231
"intracellular membrane-bounded organelle" evidence=ISO]
REFSEQ:XM_002727143 Ncbi:XP_002727189
Length = 430
Score = 150 (57.9 bits), Expect = 6.4e-10, P = 6.4e-10
Identities = 35/103 (33%), Positives = 56/103 (54%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T Q GYGFV++ P A+KA+ +L +Q + K P+ NLY+S LP
Sbjct: 92 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPI 144
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G +I++RIL D G ++ + E+
Sbjct: 145 SMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEK 187
>MGI|MGI:2444477 [details] [associations]
symbol:Rbms3 "RNA binding motif, single stranded interacting
protein" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
MGI:MGI:2444477 GO:GO:0043231 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GeneTree:ENSGT00630000089747
eggNOG:NOG320163 HOVERGEN:HBG053108 HSSP:Q15434 CTD:27303
OMA:QQMTVET OrthoDB:EOG4KKZ35 ChiTaRS:RBMS3 EMBL:AK030478
EMBL:AK030609 EMBL:AK032938 EMBL:AK033005 EMBL:AK041098
EMBL:AK046197 EMBL:AK052196 EMBL:BC108402 EMBL:BC117841
IPI:IPI00346515 IPI:IPI00474248 IPI:IPI00828372 IPI:IPI00828512
IPI:IPI00828705 IPI:IPI00828757 RefSeq:NP_001165592.1
RefSeq:NP_001165593.1 RefSeq:NP_001165594.1 RefSeq:NP_001165595.1
RefSeq:NP_001165597.1 RefSeq:NP_848775.2 UniGene:Mm.326411
ProteinModelPortal:Q8BWL5 SMR:Q8BWL5 PhosphoSite:Q8BWL5
PaxDb:Q8BWL5 PRIDE:Q8BWL5 Ensembl:ENSMUST00000044901
Ensembl:ENSMUST00000068962 Ensembl:ENSMUST00000111772
Ensembl:ENSMUST00000111773 Ensembl:ENSMUST00000164018
Ensembl:ENSMUST00000174868 GeneID:207181 KEGG:mmu:207181
UCSC:uc009ryv.2 UCSC:uc009ryw.2 UCSC:uc009ryx.2 UCSC:uc009ryy.2
UCSC:uc009ryz.2 UCSC:uc009rza.2 InParanoid:Q8BWL5 NextBio:371875
Bgee:Q8BWL5 Genevestigator:Q8BWL5 Uniprot:Q8BWL5
Length = 431
Score = 150 (57.9 bits), Expect = 6.4e-10, P = 6.4e-10
Identities = 35/103 (33%), Positives = 56/103 (54%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T Q GYGFV++ P A+KA+ +L +Q + K P+ NLY+S LP
Sbjct: 92 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPI 144
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G +I++RIL D G ++ + E+
Sbjct: 145 SMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEK 187
>UNIPROTKB|J3QT21 [details] [associations]
symbol:RBMS3 "RNA-binding motif,
single-stranded-interacting protein 3" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AC012262 EMBL:AC021068 EMBL:AC092795 EMBL:AC092796
EMBL:AC097633 EMBL:AC098650 EMBL:AC099048 HGNC:HGNC:13427
ChiTaRS:RBMS3 ProteinModelPortal:J3QT21 Ensembl:ENST00000396583
Uniprot:J3QT21
Length = 434
Score = 150 (57.9 bits), Expect = 6.5e-10, P = 6.5e-10
Identities = 35/103 (33%), Positives = 56/103 (54%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T Q GYGFV++ P A+KA+ +L +Q + K P+ NLY+S LP
Sbjct: 97 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPI 149
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G +I++RIL D G ++ + E+
Sbjct: 150 SMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEK 192
>UNIPROTKB|C9JIJ9 [details] [associations]
symbol:RBMS3 "RNA-binding motif,
single-stranded-interacting protein 3" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0043231 "intracellular membrane-bounded
organelle" evidence=IDA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0043231 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOGENOM:HOG000008467 EMBL:AC012262 EMBL:AC021068
EMBL:AC092795 EMBL:AC092796 EMBL:AC097633 EMBL:AC098650
EMBL:AC099048 HGNC:HGNC:13427 OrthoDB:EOG4KKZ35 ChiTaRS:RBMS3
IPI:IPI00927842 ProteinModelPortal:C9JIJ9 SMR:C9JIJ9 STRING:C9JIJ9
PRIDE:C9JIJ9 Ensembl:ENST00000434693 ArrayExpress:C9JIJ9
Bgee:C9JIJ9 Uniprot:C9JIJ9
Length = 436
Score = 150 (57.9 bits), Expect = 6.5e-10, P = 6.5e-10
Identities = 35/103 (33%), Positives = 56/103 (54%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T Q GYGFV++ P A+KA+ +L +Q + K P+ NLY+S LP
Sbjct: 96 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPI 148
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G +I++RIL D G ++ + E+
Sbjct: 149 SMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEK 191
>UNIPROTKB|E1BPT6 [details] [associations]
symbol:RBMS3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043231 "intracellular membrane-bounded organelle"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0043231 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GeneTree:ENSGT00630000089747
OMA:QQMTVET EMBL:DAAA02053512 EMBL:DAAA02053513 EMBL:DAAA02053514
EMBL:DAAA02053515 EMBL:DAAA02053516 EMBL:DAAA02053517
EMBL:DAAA02053518 EMBL:DAAA02053519 EMBL:DAAA02053520
EMBL:DAAA02053521 EMBL:DAAA02053522 EMBL:DAAA02053523
IPI:IPI00711139 Ensembl:ENSBTAT00000061510 Uniprot:E1BPT6
Length = 437
Score = 150 (57.9 bits), Expect = 6.6e-10, P = 6.6e-10
Identities = 35/103 (33%), Positives = 56/103 (54%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T Q GYGFV++ P A+KA+ +L +Q + K P+ NLY+S LP
Sbjct: 97 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPI 149
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G +I++RIL D G ++ + E+
Sbjct: 150 SMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEK 192
>UNIPROTKB|E2RA90 [details] [associations]
symbol:RBMS3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043231 "intracellular membrane-bounded
organelle" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0043231 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GeneTree:ENSGT00630000089747
OMA:QQMTVET EMBL:AAEX03013537 EMBL:AAEX03013538 EMBL:AAEX03013539
Ensembl:ENSCAFT00000008829 Uniprot:E2RA90
Length = 437
Score = 150 (57.9 bits), Expect = 6.6e-10, P = 6.6e-10
Identities = 35/103 (33%), Positives = 56/103 (54%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T Q GYGFV++ P A+KA+ +L +Q + K P+ NLY+S LP
Sbjct: 97 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPI 149
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G +I++RIL D G ++ + E+
Sbjct: 150 SMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEK 192
>UNIPROTKB|Q6XE24 [details] [associations]
symbol:RBMS3 "RNA-binding motif,
single-stranded-interacting protein 3" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0043231 "intracellular membrane-bounded organelle"
evidence=IDA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0043231 GO:GO:0005737 GO:GO:0000166
EMBL:CH471055 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG320163
HOGENOM:HOG000008467 HOVERGEN:HBG053108 HSSP:Q15434 EMBL:AF023259
EMBL:AY236871 EMBL:AY236872 EMBL:AK292789 EMBL:AC012262
EMBL:AC021068 EMBL:AC092795 EMBL:AC092796 EMBL:AC097633
EMBL:AC098650 EMBL:AC099048 EMBL:BC117315 EMBL:BC143521
IPI:IPI00298424 IPI:IPI00472404 IPI:IPI00827856 IPI:IPI00985081
RefSeq:NP_001003792.1 RefSeq:NP_001003793.1 RefSeq:NP_001171182.1
RefSeq:NP_001171183.1 RefSeq:NP_055298.2 UniGene:Hs.221436
ProteinModelPortal:Q6XE24 SMR:Q6XE24 STRING:Q6XE24
PhosphoSite:Q6XE24 DMDM:74762382 PaxDb:Q6XE24 PRIDE:Q6XE24
Ensembl:ENST00000273139 Ensembl:ENST00000383766
Ensembl:ENST00000383767 Ensembl:ENST00000452462
Ensembl:ENST00000456853 GeneID:27303 KEGG:hsa:27303 UCSC:uc003cek.3
UCSC:uc003cel.3 UCSC:uc003cem.3 UCSC:uc010hfq.3 CTD:27303
GeneCards:GC03P029298 HGNC:HGNC:13427 HPA:HPA034719 MIM:605786
neXtProt:NX_Q6XE24 PharmGKB:PA34276 InParanoid:Q6XE24 OMA:QQMTVET
OrthoDB:EOG4KKZ35 ChiTaRS:RBMS3 GenomeRNAi:27303 NextBio:50293
ArrayExpress:Q6XE24 Bgee:Q6XE24 CleanEx:HS_RBMS3
Genevestigator:Q6XE24 Uniprot:Q6XE24
Length = 437
Score = 150 (57.9 bits), Expect = 6.6e-10, P = 6.6e-10
Identities = 35/103 (33%), Positives = 56/103 (54%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T Q GYGFV++ P A+KA+ +L +Q + K P+ NLY+S LP
Sbjct: 97 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPI 149
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE++ P+G +I++RIL D G ++ + E+
Sbjct: 150 SMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEK 192
>UNIPROTKB|H7BY49 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 Ensembl:ENST00000361692 Uniprot:H7BY49
Length = 152
Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
Identities = 32/104 (30%), Positives = 60/104 (57%)
Query: 26 CVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR-PSSESIKGAN-- 82
C ++ TA + Y FV +H A A+ +NG ++ K +KV++A PSS+ +N
Sbjct: 28 CKMIMDTAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSNHF 87
Query: 83 -LYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYY 125
++V L ++ +++++ F+P+GRI +R++ D +AT K Y
Sbjct: 88 HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKD-MATGKSKGY 130
>ZFIN|ZDB-GENE-030131-3238 [details] [associations]
symbol:pabpc1a "poly A binding protein,
cytoplasmic 1 a" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0007507 "heart development" evidence=IMP] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-3238 GO:GO:0007507
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 OrthoDB:EOG40ZQX5
EMBL:BC099992 IPI:IPI00485280 RefSeq:NP_001026846.1
UniGene:Dr.24504 ProteinModelPortal:Q499B6 SMR:Q499B6 STRING:Q499B6
GeneID:606498 KEGG:dre:606498 CTD:606498 InParanoid:Q499B6
NextBio:20892436 ArrayExpress:Q499B6 Uniprot:Q499B6
Length = 634
Score = 152 (58.6 bits), Expect = 7.4e-10, P = 7.4e-10
Identities = 29/93 (31%), Positives = 57/93 (61%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+ +P DAE+A++T+N ++ + +++ +++ PS N+++ L
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLD 107
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++CD ENG
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 127 (49.8 bits), Expect = 3.6e-07, P = 3.6e-07
Identities = 31/111 (27%), Positives = 55/111 (49%)
Query: 20 FSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSES 77
F + C + S GYGFV++ E AE+AI +NG+ L ++ + V +R E+
Sbjct: 122 FGNILSCKVVCDENGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 78 IKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
GA N+Y+ + M ++L+ +F YG ++ R++ D+ G
Sbjct: 182 EMGARAKEFTNVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDDSGKSKG 232
Score = 93 (37.8 bits), Expect = 8.9e-07, Sum P(2) = 8.9e-07
Identities = 18/52 (34%), Positives = 31/52 (59%)
Query: 25 ICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
I V + +S G+GFV++ R EDA++A++ +NG + K + V A+ E
Sbjct: 220 IRVMTDDSGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYVGRAQKKGE 271
Score = 71 (30.1 bits), Expect = 8.9e-07, Sum P(2) = 8.9e-07
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 79 KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+G NLYV L + + L FSP+G I +++++ +
Sbjct: 292 QGVNLYVKNLDDGLDDERLRKEFSPFGTITSAKVMME 328
>FB|FBgn0052423 [details] [associations]
symbol:shep "alan shepard" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0042332 "gravitaxis" evidence=IMP] [GO:0009629 "response to
gravity" evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 EMBL:AE014296 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0009629 GeneTree:ENSGT00630000089747
eggNOG:NOG320163 HSSP:Q15434 OrthoDB:EOG4C8687 EMBL:AY060954
EMBL:AY060995 EMBL:AY094948 EMBL:AY118564 RefSeq:NP_001163350.1
RefSeq:NP_729054.3 RefSeq:NP_729055.1 RefSeq:NP_729056.1
RefSeq:NP_729057.2 UniGene:Dm.20861 ProteinModelPortal:Q8MSV2
SMR:Q8MSV2 MINT:MINT-339377 PaxDb:Q8MSV2 PRIDE:Q8MSV2
EnsemblMetazoa:FBtr0077172 GeneID:38605 KEGG:dme:Dmel_CG32423
UCSC:CG32423-RA CTD:38605 FlyBase:FBgn0052423 InParanoid:Q9VRK5
OMA:LVNMCAQ PhylomeDB:Q8MSV2 GenomeRNAi:38605 NextBio:809487
Bgee:Q8MSV2 Uniprot:Q8MSV2
Length = 578
Score = 151 (58.2 bits), Expect = 8.2e-10, P = 8.2e-10
Identities = 33/103 (32%), Positives = 57/103 (55%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ +P AE A+ L G +Q + K P+ NLY++ LP
Sbjct: 267 TTNKCKGYGFVDFEQPAFAECAVKGLQGKGVQAQMAKQQEQDPT-------NLYIANLPP 319
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
H + +LE++ S YG+++++RIL D G ++ + RE+
Sbjct: 320 HFKETDLEAMLSKYGQVVSTRILRDQQMNSKGVGFARMESREK 362
>UNIPROTKB|B4HUE4 [details] [associations]
symbol:shep "Protein alan shepard" species:7238 "Drosophila
sechellia" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0009629 "response
to gravity" evidence=ISS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0009629 EMBL:CH480817 OrthoDB:EOG4C8687 RefSeq:XP_002035429.1
ProteinModelPortal:B4HUE4 EnsemblMetazoa:FBtr0196912 GeneID:6610863
KEGG:dse:Dsec_GM13927 FlyBase:FBgn0168857 Uniprot:B4HUE4
Length = 579
Score = 151 (58.2 bits), Expect = 8.3e-10, P = 8.3e-10
Identities = 33/103 (32%), Positives = 57/103 (55%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ +P AE A+ L G +Q + K P+ NLY++ LP
Sbjct: 267 TTNKCKGYGFVDFEQPAFAECAVKGLQGKGVQAQMAKQQEQDPT-------NLYIANLPP 319
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
H + +LE++ S YG+++++RIL D G ++ + RE+
Sbjct: 320 HFKETDLEAMLSKYGQVVSTRILRDQQMNSKGVGFARMESREK 362
>UNIPROTKB|B4MM23 [details] [associations]
symbol:shep "Protein alan shepard" species:7260 "Drosophila
willistoni" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0009629 "response
to gravity" evidence=ISS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0009629 EMBL:CH963847 eggNOG:NOG320163 OrthoDB:EOG4C8687
RefSeq:XP_002062046.1 ProteinModelPortal:B4MM23 GeneID:6639197
KEGG:dwi:Dwil_GK17327 FlyBase:FBgn0219326 InParanoid:B4MM23
Uniprot:B4MM23
Length = 581
Score = 151 (58.2 bits), Expect = 8.3e-10, P = 8.3e-10
Identities = 33/103 (32%), Positives = 58/103 (56%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ +P AE A+ GL Q K ++ A+ + NLY++ LP
Sbjct: 273 TTNKCKGYGFVDFEQPAYAENAVK---GL--QAKGVQAQMAKQQEQD--PTNLYIANLPP 325
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
H + +LE++ S YG+++++RIL D G ++ + RE+
Sbjct: 326 HFKETDLEAMLSKYGQVVSTRILRDQQMNSKGVGFARMESREK 368
>UNIPROTKB|B3NGA1 [details] [associations]
symbol:shep "Protein alan shepard" species:7220 "Drosophila
erecta" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0009629 "response to gravity"
evidence=ISS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0009629 EMBL:CH954178 OrthoDB:EOG4C8687 RefSeq:XP_001971976.1
ProteinModelPortal:B3NGA1 EnsemblMetazoa:FBtr0134193 GeneID:6544279
KEGG:der:Dere_GG14139 FlyBase:FBgn0106400 Uniprot:B3NGA1
Length = 582
Score = 151 (58.2 bits), Expect = 8.3e-10, P = 8.3e-10
Identities = 33/103 (32%), Positives = 57/103 (55%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ +P AE A+ L G +Q + K P+ NLY++ LP
Sbjct: 267 TTNKCKGYGFVDFEQPAFAECAVKGLQGKGVQAQMAKQQEQDPT-------NLYIANLPP 319
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
H + +LE++ S YG+++++RIL D G ++ + RE+
Sbjct: 320 HFKETDLEAMLSKYGQVVSTRILRDQQMNSKGVGFARMESREK 362
>UNIPROTKB|B4PIS2 [details] [associations]
symbol:shep "Protein alan shepard" species:7245 "Drosophila
yakuba" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0009629 "response to gravity"
evidence=ISS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0009629 EMBL:CM000159 eggNOG:NOG320163 OrthoDB:EOG4C8687
RefSeq:XP_002093780.1 ProteinModelPortal:B4PIS2
EnsemblMetazoa:FBtr0267086 GeneID:6533045 KEGG:dya:Dyak_GE20568
FlyBase:FBgn0237877 Uniprot:B4PIS2
Length = 582
Score = 151 (58.2 bits), Expect = 8.3e-10, P = 8.3e-10
Identities = 33/103 (32%), Positives = 57/103 (55%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ +P AE A+ L G +Q + K P+ NLY++ LP
Sbjct: 267 TTNKCKGYGFVDFEQPAFAECAVKGLQGKGVQAQMAKQQEQDPT-------NLYIANLPP 319
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
H + +LE++ S YG+++++RIL D G ++ + RE+
Sbjct: 320 HFKETDLEAMLSKYGQVVSTRILRDQQMNSKGVGFARMESREK 362
>UNIPROTKB|B3M3R5 [details] [associations]
symbol:shep "Protein alan shepard" species:7217 "Drosophila
ananassae" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0009629 "response
to gravity" evidence=ISS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0009629 EMBL:CH902618 eggNOG:NOG320163 RefSeq:XP_001957552.1
ProteinModelPortal:B3M3R5 GeneID:6493340 KEGG:dan:Dana_GF10470
FlyBase:FBgn0087511 InParanoid:B3M3R5 OrthoDB:EOG4C8687
Uniprot:B3M3R5
Length = 597
Score = 151 (58.2 bits), Expect = 8.7e-10, P = 8.7e-10
Identities = 33/100 (33%), Positives = 57/100 (57%)
Query: 38 YGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY---ARPSSESIKG-ANLYVSGLPKHMS 93
YGFV++ +P AE A+ L G +Q + KV RP+ + + NLY++ LP H
Sbjct: 277 YGFVDFEQPAFAECAVKGLQGKGVQAQMAKVGIWVLHRPAIQQEQDPTNLYIANLPPHYK 336
Query: 94 QQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
+ +LE++ S YG+++++RIL D G ++ + RE+
Sbjct: 337 ETDLEAMLSKYGQVVSTRILRDQQMNSKGVGFARMESREK 376
>RGD|1559517 [details] [associations]
symbol:Pabpc4l "poly(A) binding protein, cytoplasmic 4-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1559517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
TIGRFAMs:TIGR01628 OrthoDB:EOG4M398T GeneTree:ENSGT00640000091232
CTD:132430 EMBL:CH474091 IPI:IPI00367682 RefSeq:NP_001099899.1
UniGene:Rn.218503 Ensembl:ENSRNOT00000017012 GeneID:295010
KEGG:rno:295010 UCSC:RGD:1559517 NextBio:638845 Uniprot:D3ZGA4
Length = 370
Score = 147 (56.8 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 35/103 (33%), Positives = 63/103 (61%)
Query: 25 ICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGA--N 82
IC LIS +SLGYG+VN+ + DA+KA+ T+N ++ K+I++ +++ + K N
Sbjct: 41 ICRDLISH-RSLGYGYVNFLQVGDAQKALETMNFDLIKGKSIRLMWSQRDACLRKSGIGN 99
Query: 83 LYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYY 125
+++ L K + + L FSP+G+I++S+++ D E K Y
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSPFGKIMSSKVMTDE---EGSKGY 139
Score = 111 (44.1 bits), Expect = 8.4e-06, P = 8.4e-06
Identities = 29/89 (32%), Positives = 49/89 (55%)
Query: 35 SLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSESI---KGA---NLYVS 86
S GYGFV+Y A++AI +NG L++ T+ V+ +R E+ K A N+Y+
Sbjct: 136 SKGYGFVHYQDQRAADRAIEEMNGKLLRDSTLFVARFKSRKDREAELREKPAEFTNVYIK 195
Query: 87 GLPKHMSQQELESLFSPYGRIITSRILCD 115
M + L S+FS YG+ ++ +++ D
Sbjct: 196 NFGDDMDDESLRSVFSKYGQTLSVKVMKD 224
>ZFIN|ZDB-GENE-030131-4967 [details] [associations]
symbol:rbms1a "RNA binding motif, single stranded
interacting protein 1a" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-4967 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GeneTree:ENSGT00630000089747 EMBL:CR792451
IPI:IPI00507907 Ensembl:ENSDART00000064860 Bgee:E7FAG7
Uniprot:E7FAG7
Length = 398
Score = 146 (56.5 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 34/103 (33%), Positives = 56/103 (54%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA+ L +Q + K P+ NLY+S LP
Sbjct: 93 TTNKCKGYGFVDFDSPVSAQKAVAALKTNGVQAQMAKQQEQDPT-------NLYLSNLPV 145
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +QELE+L P+G+++++RIL D G ++ + E+
Sbjct: 146 SMDEQELENLLKPFGQVVSTRILRDTNGMSRGVGFARMESTEK 188
>RGD|1310759 [details] [associations]
symbol:Pabpc2 "poly(A) binding protein, cytoplasmic 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1310759
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:CH473974 GeneTree:ENSGT00640000091232 IPI:IPI00200243
RefSeq:NP_001099621.1 UniGene:Rn.127161 Ensembl:ENSRNOT00000019467
GeneID:291615 KEGG:rno:291615 UCSC:RGD:1310759 CTD:18459
OMA:VSEMNGR OrthoDB:EOG4BK55N NextBio:632859 Uniprot:D4A233
Length = 630
Score = 149 (57.5 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 35/113 (30%), Positives = 63/113 (55%)
Query: 13 YEKVHLGFSDAEICVFL-ISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYA 71
YEK I V+ + T +SLGY VN+ +P DAE+A++T+N ++ K +++ ++
Sbjct: 28 YEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALDTMNFDVIKGKPVRIMWS 87
Query: 72 R--PSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ PS N+++ L K + + L FS +G I++ +++CD ENG
Sbjct: 88 QRDPSLRRSGVGNVFIKNLNKTIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 116 (45.9 bits), Expect = 5.3e-06, P = 5.3e-06
Identities = 36/134 (26%), Positives = 63/134 (47%)
Query: 4 QTLLNKLFTYEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQN 63
+T+ NK Y+ F + C + S G+GFV++ E AE+AI +NG+ L +
Sbjct: 108 KTIDNKAL-YDTFS-AFGNILSCKVVCDENGSKGHGFVHFETEEAAERAIEKMNGMLLND 165
Query: 64 KTIKVSY--ARPSSESIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+ + V +R E+ G N+Y+ M + L LF +G++++ +++ D
Sbjct: 166 RKVFVGQFKSRKEREAELGTRTKEFTNVYIKNFGDRMDDKTLNGLFGRFGQVLSVKVMTD 225
Query: 116 NLATENGKYYSGLG 129
E GK G G
Sbjct: 226 ----EGGKS-KGFG 234
Score = 91 (37.1 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 18/39 (46%), Positives = 27/39 (69%)
Query: 34 QSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR 72
+S G+GFV++ R EDA+KA++ +NG L K I V A+
Sbjct: 229 KSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYVGPAQ 267
Score = 72 (30.4 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 79 KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLG 129
+G NLYV L + + L+ FSP+G I +++++ TE G+ G G
Sbjct: 292 QGINLYVKNLDDGIDDERLQKEFSPFGTITSTKVM-----TEGGRS-KGFG 336
>UNIPROTKB|D4A7H4 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00214634 ProteinModelPortal:D4A7H4
Ensembl:ENSRNOT00000023323 Uniprot:D4A7H4
Length = 281
Score = 142 (55.0 bits), Expect = 1.7e-09, P = 1.7e-09
Identities = 32/104 (30%), Positives = 60/104 (57%)
Query: 26 CVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR-PSSESIKGAN-- 82
C ++ TA + Y FV +H A A+ +NG ++ K +KV++A PSS+ +N
Sbjct: 32 CKMIMDTAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSNHF 91
Query: 83 -LYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYY 125
++V L ++ +++++ F+P+GRI +R++ D +AT K Y
Sbjct: 92 HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKD-MATGKSKGY 134
>UNIPROTKB|Q5SZ64 [details] [associations]
symbol:SF3B4 "Splicing factor 3B subunit 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL591493
HOVERGEN:HBG002295 HOGENOM:HOG000200535 EMBL:AL590487
UniGene:Hs.516160 HGNC:HGNC:10771 IPI:IPI00644485 SMR:Q5SZ64
MINT:MINT-1440537 STRING:Q5SZ64 Ensembl:ENST00000457312
Uniprot:Q5SZ64
Length = 190
Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 34/97 (35%), Positives = 56/97 (57%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIK-GANLYVSGLPK 90
T Q GYGFV + EDA+ AI +N ++L K I+V+ A ++++ GAN+++ L
Sbjct: 7 TGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDP 66
Query: 91 HMSQQELESLFSPYGRII-TSRILCDNLATENGKYYS 126
+ ++ L FS +G I+ T +I+ D T N K Y+
Sbjct: 67 EIDEKLLYDTFSAFGVILQTPKIMRDP-DTGNSKGYA 102
>UNIPROTKB|B4KX02 [details] [associations]
symbol:shep "Protein alan shepard" species:7230 "Drosophila
mojavensis" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0009629 "response
to gravity" evidence=ISS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0009629 EMBL:CH933809 OrthoDB:EOG4C8687 RefSeq:XP_002008147.1
ProteinModelPortal:B4KX02 EnsemblMetazoa:FBtr0162707 GeneID:6582444
KEGG:dmo:Dmoj_GI11982 FlyBase:FBgn0134739 InParanoid:B4KX02
Uniprot:B4KX02
Length = 592
Score = 148 (57.2 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 32/107 (29%), Positives = 60/107 (56%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY---ARPSSESIKG-ANLYVS 86
+T + GYGFV++ +P AE A+ L +Q + KV RP+ + + NLY++
Sbjct: 265 TTNKCKGYGFVDFEQPAYAEGAVKGLQAKGVQAQMAKVGIWVLHRPAIQQEQDPTNLYIA 324
Query: 87 GLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
LP H + +LE++ + +G+++++RIL D G ++ + RE+
Sbjct: 325 NLPPHFKETDLEAMLAKFGQVVSTRILRDQQMNSKGVGFARMESREK 371
>UNIPROTKB|C9JTN7 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000206748
EMBL:AC016700 HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00927286
ProteinModelPortal:C9JTN7 SMR:C9JTN7 STRING:C9JTN7
Ensembl:ENST00000445587 ArrayExpress:C9JTN7 Bgee:C9JTN7
Uniprot:C9JTN7
Length = 285
Score = 142 (55.0 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 32/104 (30%), Positives = 60/104 (57%)
Query: 26 CVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR-PSSESIKGAN-- 82
C ++ TA + Y FV +H A A+ +NG ++ K +KV++A PSS+ +N
Sbjct: 36 CKMIMDTAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSNHF 95
Query: 83 -LYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYY 125
++V L ++ +++++ F+P+GRI +R++ D +AT K Y
Sbjct: 96 HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKD-MATGKSKGY 138
>UNIPROTKB|Q4VXU2 [details] [associations]
symbol:PABPC1L "Polyadenylate-binding protein 1-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 EMBL:AL008725
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 HOGENOM:HOG000217922 OrthoDB:EOG4K6G3V
HSSP:P11940 EMBL:AL109839 IPI:IPI00556259 RefSeq:NP_001118228.1
UniGene:Hs.641481 ProteinModelPortal:Q4VXU2 SMR:Q4VXU2
IntAct:Q4VXU2 STRING:Q4VXU2 PhosphoSite:Q4VXU2 DMDM:74754038
PaxDb:Q4VXU2 PRIDE:Q4VXU2 Ensembl:ENST00000217073
Ensembl:ENST00000255136 GeneID:80336 KEGG:hsa:80336 UCSC:uc010ggv.1
GeneCards:GC20P043538 HGNC:HGNC:15797 neXtProt:NX_Q4VXU2
PharmGKB:PA162398552 InParanoid:Q4VXU2 OMA:MNFEMLK ChiTaRS:PABPC1L
GenomeRNAi:80336 NextBio:70904 ArrayExpress:Q4VXU2 Bgee:Q4VXU2
CleanEx:HS_PABPC1L Genevestigator:Q4VXU2 Uniprot:Q4VXU2
Length = 614
Score = 148 (57.2 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 32/90 (35%), Positives = 57/90 (63%)
Query: 35 SLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSESIKGA------NLYVS 86
S G+GFV++ E A++AINT+NG+ L ++ + V + +R E+ GA N+YV
Sbjct: 137 SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVK 196
Query: 87 GLPKHMSQQELESLFSPYGRIITSRILCDN 116
LP + +Q L+ LFS +G++++ +++ DN
Sbjct: 197 NLPVDVDEQGLQDLFSQFGKMLSVKVMRDN 226
Score = 146 (56.5 bits), Expect = 3.1e-09, P = 3.1e-09
Identities = 25/88 (28%), Positives = 53/88 (60%)
Query: 30 ISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSG 87
++T +SLGY ++N+ +P DAE+A++T+N L+ + I++ +++ P N+++
Sbjct: 46 VATRRSLGYAYINFQQPADAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKN 105
Query: 88 LPKHMSQQELESLFSPYGRIITSRILCD 115
L + + L FS +G I++ ++ CD
Sbjct: 106 LEDSIDNKALYDTFSTFGNILSCKVACD 133
>UNIPROTKB|B1ANR1 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000217922 EMBL:AL845289 UniGene:Hs.169900 HGNC:HGNC:8557
ChiTaRS:PABPC4 IPI:IPI00644016 SMR:B1ANR1 STRING:B1ANR1
Ensembl:ENST00000451091 Uniprot:B1ANR1
Length = 129
Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 28/89 (31%), Positives = 54/89 (60%)
Query: 25 ICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGAN 82
+C +I T +SLGY +VN+ +P DAE+A++T+N ++ K I++ +++ PS N
Sbjct: 42 VCRDMI-TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGN 100
Query: 83 LYVSGLPKHMSQQELESLFSPYGRIITSR 111
+++ L K + + L FS +G I++ +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCK 129
>UNIPROTKB|E5RJB9 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI01013146
ProteinModelPortal:E5RJB9 SMR:E5RJB9 Ensembl:ENST00000521865
ArrayExpress:E5RJB9 Bgee:E5RJB9 Uniprot:E5RJB9
Length = 129
Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 27/89 (30%), Positives = 54/89 (60%)
Query: 25 ICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGAN 82
+C +I T +SLGY +VN+ +P DAE+A++T+N ++ K +++ +++ PS N
Sbjct: 42 VCRDMI-TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGN 100
Query: 83 LYVSGLPKHMSQQELESLFSPYGRIITSR 111
+++ L K + + L FS +G I++ +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCK 129
>UNIPROTKB|Q6DEY7 [details] [associations]
symbol:epabp "Embryonic polyadenylate-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0005737
"cytoplasm" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] [GO:0031370 "eukaryotic initiation factor 4G binding"
evidence=ISS] [GO:0043009 "chordate embryonic development"
evidence=ISS] [GO:0043621 "protein self-association" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0043009
eggNOG:COG0724 GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC076956 RefSeq:NP_001005062.1 UniGene:Str.8393
ProteinModelPortal:Q6DEY7 SMR:Q6DEY7 STRING:Q6DEY7 PRIDE:Q6DEY7
GeneID:448615 KEGG:xtr:448615 CTD:80336 Xenbase:XB-GENE-5742459
HOGENOM:HOG000217922 InParanoid:Q6DEY7 OrthoDB:EOG4K6G3V
Uniprot:Q6DEY7
Length = 629
Score = 147 (56.8 bits), Expect = 2.5e-09, P = 2.5e-09
Identities = 25/88 (28%), Positives = 55/88 (62%)
Query: 30 ISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSG 87
I+T +SLGY ++N+ +P DAE+A++T+N ++ + I++ +++ P N+++
Sbjct: 46 IATRRSLGYAYINFQQPADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKN 105
Query: 88 LPKHMSQQELESLFSPYGRIITSRILCD 115
L + + + L FS +G I++ +++CD
Sbjct: 106 LDESIDNKALYDTFSAFGNILSCKVVCD 133
Score = 133 (51.9 bits), Expect = 8.0e-08, P = 8.0e-08
Identities = 32/125 (25%), Positives = 59/125 (47%)
Query: 20 FSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSES 77
F + C + S GYGFV++ E A +AI T+NG+ L ++ + V + +R E
Sbjct: 122 FGNILSCKVVCDEHGSRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRREREL 181
Query: 78 IKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGR 131
GA N+Y+ + M + L +FS +G ++ +++ D+ G + G
Sbjct: 182 EYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNH 241
Query: 132 ERLRR 136
E ++
Sbjct: 242 EEAQK 246
Score = 94 (38.1 bits), Expect = 3.4e-07, Sum P(2) = 3.4e-07
Identities = 19/50 (38%), Positives = 30/50 (60%)
Query: 27 VFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
V + T +S G+GFVNY E+A+KA++ +NG + + I V A+ E
Sbjct: 222 VMMDDTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIE 271
Score = 73 (30.8 bits), Expect = 3.4e-07, Sum P(2) = 3.4e-07
Identities = 18/51 (35%), Positives = 26/51 (50%)
Query: 79 KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLG 129
+G NLYV L + L FSPYG I +++++ TE G + G G
Sbjct: 292 QGVNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVM-----TEGG-HSKGFG 336
>UNIPROTKB|B4LFQ9 [details] [associations]
symbol:shep "Protein alan shepard" species:7244 "Drosophila
virilis" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0009629 "response to gravity"
evidence=ISS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0009629 EMBL:CH940647 eggNOG:NOG320163 OrthoDB:EOG4C8687
RefSeq:XP_002046944.1 ProteinModelPortal:B4LFQ9 GeneID:6622264
KEGG:dvi:Dvir_GJ12205 FlyBase:FBgn0199455 InParanoid:B4LFQ9
Uniprot:B4LFQ9
Length = 595
Score = 146 (56.5 bits), Expect = 3.0e-09, P = 3.0e-09
Identities = 32/103 (31%), Positives = 58/103 (56%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ +P AE A+ GL Q K ++ A+ + NLY++ LP
Sbjct: 279 TTNKCKGYGFVDFEQPAYAEGAVK---GL--QAKGVQAQMAKQQEQD--PTNLYIANLPP 331
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
H + +LE++ + YG+++++RIL D G ++ + RE+
Sbjct: 332 HFKETDLEAMLAKYGQVVSTRILRDQQMNSKGVGFARMESREK 374
>UNIPROTKB|B4IX08 [details] [associations]
symbol:shep "Protein alan shepard" species:7222 "Drosophila
grimshawi" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0009629 "response
to gravity" evidence=ISS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0009629 EMBL:CH916366 eggNOG:NOG320163 OrthoDB:EOG4C8687
RefSeq:XP_001983966.1 ProteinModelPortal:B4IX08
EnsemblMetazoa:FBtr0150687 GeneID:6558604 KEGG:dgr:Dgri_GH15273
FlyBase:FBgn0122748 InParanoid:B4IX08 OMA:DDQYSSS Uniprot:B4IX08
Length = 609
Score = 146 (56.5 bits), Expect = 3.1e-09, P = 3.1e-09
Identities = 32/103 (31%), Positives = 58/103 (56%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ +P AE A+ GL Q K ++ A+ + NLY++ LP
Sbjct: 293 TTNKCKGYGFVDFEQPAYAEGAVK---GL--QAKGVQAQMAKQQEQD--PTNLYIANLPP 345
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
H + +LE++ + YG+++++RIL D G ++ + RE+
Sbjct: 346 HFKETDLEAMLAKYGQVVSTRILRDQQMNSKGVGFARMESREK 388
>POMBASE|SPAC57A7.04c [details] [associations]
symbol:pabp "mRNA export shuttling protein"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0006446 "regulation of translational initiation"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=TAS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 PomBase:SPAC57A7.04c
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0000166 GO:GO:0006446 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006406 eggNOG:COG0724 GO:GO:0002183 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 OrthoDB:EOG4QJVWJ EMBL:M64603 PIR:T38950
RefSeq:NP_593377.1 ProteinModelPortal:P31209 SMR:P31209
IntAct:P31209 STRING:P31209 PRIDE:P31209
EnsemblFungi:SPAC57A7.04c.1 GeneID:2541505 KEGG:spo:SPAC57A7.04c
OMA:ANHECAQ NextBio:20802604 Uniprot:P31209
Length = 653
Score = 146 (56.5 bits), Expect = 3.4e-09, P = 3.4e-09
Identities = 27/93 (29%), Positives = 52/93 (55%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLP 89
T +SLGY +VN+H ED EKA++ LN ++ + ++ +++ PS + N+++ L
Sbjct: 117 TRRSLGYAYVNFHNMEDGEKALDELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLD 176
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ + L FS +G+I++ ++ D L G
Sbjct: 177 PAIDNKALHDTFSAFGKILSCKVAVDELGNAKG 209
Score = 113 (44.8 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 28/87 (32%), Positives = 46/87 (52%)
Query: 37 GYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY-----ARPSS-ESIKG--ANLYVSGL 88
GYGFV++ E A AI +NG+ L +K + V + R S E++K N+Y+ L
Sbjct: 209 GYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNL 268
Query: 89 PKHMSQQELESLFSPYGRIITSRILCD 115
+++QE LF +G I + ++ D
Sbjct: 269 DTEITEQEFSDLFGQFGEITSLSLVKD 295
>RGD|1305742 [details] [associations]
symbol:Tia1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA;ISO] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO] [GO:0017148 "negative regulation of
translation" evidence=IEA;ISO] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA;ISO] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CH473957 eggNOG:COG0724
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 EMBL:BC087064 IPI:IPI00563419
RefSeq:NP_001012096.1 UniGene:Rn.198158 SMR:Q5PQR7 STRING:Q5PQR7
Ensembl:ENSRNOT00000023103 GeneID:312510 KEGG:rno:312510
UCSC:RGD:1305742 NextBio:664964 Genevestigator:Q5PQR7
Uniprot:Q5PQR7
Length = 375
Score = 142 (55.0 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 32/104 (30%), Positives = 60/104 (57%)
Query: 26 CVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR-PSSESIKGAN-- 82
C ++ TA + Y FV +H A A+ +NG ++ K +KV++A PSS+ +N
Sbjct: 36 CKMIMDTAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSNHF 95
Query: 83 -LYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYY 125
++V L ++ +++++ F+P+GRI +R++ D +AT K Y
Sbjct: 96 HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKD-MATGKSKGY 138
>RGD|1311201 [details] [associations]
symbol:Pabpc6 "poly(A) binding protein, cytoplasmic 6"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1311201
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CH474059 EMBL:BC168959
IPI:IPI00214614 RefSeq:NP_001099678.1 UniGene:Rn.108830
MINT:MINT-7138834 Ensembl:ENSRNOT00000023319 GeneID:292295
KEGG:rno:292295 CTD:67543 OMA:HEDARKA OrthoDB:EOG41G360
NextBio:633994 Genevestigator:B5DF80 Uniprot:B5DF80
Length = 643
Score = 145 (56.1 bits), Expect = 4.3e-09, P = 4.3e-09
Identities = 30/94 (31%), Positives = 57/94 (60%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGL 88
+T +SLGY VN+ + EDAE+A++T+N ++ K +++ +++ PS N++V L
Sbjct: 47 TTRRSLGYASVNFQQLEDAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNL 106
Query: 89 PKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ + + L FS +G I++ +++CD ENG
Sbjct: 107 DRSIDSKTLYDTFSAFGNILSCKVVCD----ENG 136
Score = 128 (50.1 bits), Expect = 2.8e-07, P = 2.8e-07
Identities = 31/111 (27%), Positives = 56/111 (50%)
Query: 20 FSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSES 77
F + C + S GYGFV++ E+AE+AI +NG+ L ++ + V +R ++
Sbjct: 122 FGNILSCKVVCDENGSKGYGFVHFETQEEAERAIEKMNGMFLNDRKVFVGRFKSRRDRQA 181
Query: 78 IKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
GA N+Y+ L + M + L+ LFS +G ++ +++ D G
Sbjct: 182 ELGARAKEFTNVYIKNLGEDMDDERLQDLFSRFGPALSVKVMTDESGKSKG 232
Score = 92 (37.4 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 19/45 (42%), Positives = 28/45 (62%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
+ +S G+GFV++ R EDA KA++ +NG L K I V A+ E
Sbjct: 227 SGKSKGFGFVSFERHEDARKAVDEMNGKDLNGKQIYVGRAQKKVE 271
Score = 71 (30.1 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 73 PSSESIK--GANLYVSGLPKHMSQQELESLFSPYGRIITSRI 112
P S++ G NLYV L + + L FSP+G I ++++
Sbjct: 294 PQDRSVRCQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKV 335
>UNIPROTKB|E2RND1 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:AAEX03013964 Ensembl:ENSCAFT00000015215 Uniprot:E2RND1
Length = 644
Score = 145 (56.1 bits), Expect = 4.3e-09, P = 4.3e-09
Identities = 24/89 (26%), Positives = 55/89 (61%)
Query: 30 ISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSG 87
++T +SLGY ++N+ +P DAE+A++T+N ++ + I++ +++ P N+++
Sbjct: 46 VATRRSLGYAYINFQQPADAERALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKN 105
Query: 88 LPKHMSQQELESLFSPYGRIITSRILCDN 116
L + + L FS +G I++ +++CD+
Sbjct: 106 LEDSIDNKALYDTFSTFGNILSCKVVCDD 134
Score = 128 (50.1 bits), Expect = 2.8e-07, P = 2.8e-07
Identities = 32/111 (28%), Positives = 59/111 (53%)
Query: 20 FSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSES 77
F + C + S G+GFV++ E A++AI T+NG+ L ++ + V + +R E
Sbjct: 122 FGNILSCKVVCDDHGSRGFGFVHFETHEAAQQAITTMNGMLLNDRKVFVGHFKSRREREV 181
Query: 78 IKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
GA N+YV L + +Q L+ LFS +G++++ +++ D+ G
Sbjct: 182 ELGARAMEFTNIYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRDDSGHSRG 232
Score = 81 (33.6 bits), Expect = 5.0e-05, Sum P(2) = 5.0e-05
Identities = 15/45 (33%), Positives = 27/45 (60%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
+ S G+GFVN+ + E+A+KA+ +NG + + + V A+ E
Sbjct: 227 SGHSRGFGFVNFQKHEEAQKAVMDMNGKEVSGRLLYVGRAQKRVE 271
Score = 75 (31.5 bits), Expect = 5.0e-05, Sum P(2) = 5.0e-05
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 79 KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLG 129
+G NLYV L + ++L FSPYG I +++++ TE G + G G
Sbjct: 292 QGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVM-----TEGG-HSKGFG 336
>UNIPROTKB|F1SDR6 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:CU633343 Ensembl:ENSSSCT00000008080 Uniprot:F1SDR6
Length = 608
Score = 144 (55.7 bits), Expect = 5.0e-09, P = 5.0e-09
Identities = 24/89 (26%), Positives = 55/89 (61%)
Query: 30 ISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSG 87
++T +SLGY ++N+ +P DAE+A++T+N ++ + I++ +++ P N+++
Sbjct: 46 VATRRSLGYAYINFQQPADAERALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVGNVFIKN 105
Query: 88 LPKHMSQQELESLFSPYGRIITSRILCDN 116
L + + L FS +G I++ +++CD+
Sbjct: 106 LEDSIDNKALYDTFSTFGNILSCKVVCDD 134
Score = 128 (50.1 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 32/111 (28%), Positives = 59/111 (53%)
Query: 20 FSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSES 77
F + C + S G+GFV++ E A+ AI T+NG+ L ++ + V + +R E+
Sbjct: 122 FGNILSCKVVCDDHGSRGFGFVHFETHEAAQNAIRTMNGMLLNDRKVFVGHFKSRREREA 181
Query: 78 IKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
GA N+YV L + ++ L+ LFS +G+I++ +++ D+ G
Sbjct: 182 ELGARALEFTNIYVKNLHVDVDERCLQDLFSQFGKILSVKVMRDDSGHSRG 232
>UNIPROTKB|E1BNB4 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:DAAA02036735
EMBL:DAAA02036734 IPI:IPI00715420 ProteinModelPortal:E1BNB4
Ensembl:ENSBTAT00000022412 OMA:VMTESSH Uniprot:E1BNB4
Length = 618
Score = 144 (55.7 bits), Expect = 5.1e-09, P = 5.1e-09
Identities = 24/88 (27%), Positives = 54/88 (61%)
Query: 30 ISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSG 87
++T +SLGY ++N+ +P DAE+A++T+N ++ + I++ +++ P N+++
Sbjct: 46 VATRRSLGYAYINFQQPADAERALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKN 105
Query: 88 LPKHMSQQELESLFSPYGRIITSRILCD 115
L + + L FS +G I++ +++CD
Sbjct: 106 LEDSIDNKALYDTFSTFGNILSCKVVCD 133
Score = 131 (51.2 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 32/111 (28%), Positives = 59/111 (53%)
Query: 20 FSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSES 77
F + C + S G+GFV++ E A+ AI+T+NG+ L ++ + V + +R E
Sbjct: 122 FGNILSCKVVCDEHGSRGFGFVHFETHEAAQNAISTMNGMLLNDRKVFVGHFKSRREREV 181
Query: 78 IKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
GA N+YV L + +Q L+ LFS +G++++ +++ D+ G
Sbjct: 182 ELGARAMEFTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDDSGHSRG 232
>UNIPROTKB|B4QRJ0 [details] [associations]
symbol:shep "Protein alan shepard" species:7240 "Drosophila
simulans" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0009629 "response to gravity"
evidence=ISS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0009629 EMBL:CM000363 OrthoDB:EOG4C8687 RefSeq:XP_002083716.1
ProteinModelPortal:B4QRJ0 EnsemblMetazoa:FBtr0213117 GeneID:6736860
KEGG:dsi:Dsim_GD13207 FlyBase:FBgn0184928 Uniprot:B4QRJ0
Length = 576
Score = 143 (55.4 bits), Expect = 5.9e-09, P = 5.9e-09
Identities = 31/96 (32%), Positives = 53/96 (55%)
Query: 38 YGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQQEL 97
YGFV++ +P AE A+ L G +Q + K P+ NLY++ LP H + +L
Sbjct: 272 YGFVDFEQPAFAECAVKGLQGKGVQAQMAKQQEQDPT-------NLYIANLPPHFKETDL 324
Query: 98 ESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
E++ S YG+++++RIL D G ++ + RE+
Sbjct: 325 EAMLSKYGQVVSTRILRDQQMNSKGVGFARMESREK 360
>TAIR|locus:2094922 [details] [associations]
symbol:PAB6 "poly(A) binding protein 6" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0016071 GO:GO:0000166
GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB023046
EMBL:AC001645 eggNOG:COG0724 KO:K13126 HOGENOM:HOG000217922
HSSP:P11940 IPI:IPI00530520 RefSeq:NP_188259.1 UniGene:At.51274
ProteinModelPortal:O04319 SMR:O04319 EnsemblPlants:AT3G16380.1
GeneID:820885 KEGG:ath:AT3G16380 TAIR:At3g16380 InParanoid:O04319
OMA:CKVVEEN PhylomeDB:O04319 ProtClustDB:CLSN2913349
Genevestigator:O04319 Uniprot:O04319
Length = 537
Score = 111 (44.1 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 25/90 (27%), Positives = 49/90 (54%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPS----SESIKG-ANLYVS 86
T +S+ Y ++N+ P A A+ LN L+ K +++ +++ + G ANLYV
Sbjct: 58 TGKSMCYAYINFDSPFSASNAMTRLNHSDLKGKAMRIMWSQRDLAYRRRTRTGFANLYVK 117
Query: 87 GLPKHMSQQELESLFSPYGRIITSRILCDN 116
L ++ LE +F P+G I++ +++ +N
Sbjct: 118 NLDSSITSSCLERMFCPFGSILSCKVVEEN 147
Score = 95 (38.5 bits), Expect = 6.4e-09, Sum P(2) = 6.4e-09
Identities = 27/79 (34%), Positives = 42/79 (53%)
Query: 2 VYQTLLNKLFTYEKVHLGFSD----AEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLN 57
VY L + T + +H FS + + V +S G+GFVN+ PE+A+KA+ +L
Sbjct: 204 VYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAMESLC 263
Query: 58 GLRLQNKTIKVSYARPSSE 76
GL+L +K + V A E
Sbjct: 264 GLQLGSKKLFVGKALKKDE 282
Score = 86 (35.3 bits), Expect = 6.4e-09, Sum P(2) = 6.4e-09
Identities = 17/53 (32%), Positives = 33/53 (62%)
Query: 77 SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLG 129
+++ +NLYV L + M++ L +F YG+I++++++C ENG+ G G
Sbjct: 300 NMRWSNLYVKNLSESMNETRLREIFGCYGQIVSAKVMCH----ENGRS-KGFG 347
>UNIPROTKB|Q6GR16 [details] [associations]
symbol:epabp-b "Embryonic polyadenylate-binding protein B"
species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043009
"chordate embryonic development" evidence=ISS] [GO:0043621 "protein
self-association" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0043621 GO:GO:0048255 GO:GO:0043009 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:BC071118
RefSeq:NP_001085351.1 UniGene:Xl.3974 ProteinModelPortal:Q6GR16
SMR:Q6GR16 PRIDE:Q6GR16 GeneID:443777 KEGG:xla:443777 CTD:443777
Xenbase:XB-GENE-6251876 GO:GO:0031370 Uniprot:Q6GR16
Length = 629
Score = 143 (55.4 bits), Expect = 6.8e-09, P = 6.8e-09
Identities = 25/88 (28%), Positives = 54/88 (61%)
Query: 30 ISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSG 87
I+T +SLGY ++N+ +P DAE+A++T+N ++ + I++ +++ P N+++
Sbjct: 46 IATRRSLGYAYINFQQPADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKN 105
Query: 88 LPKHMSQQELESLFSPYGRIITSRILCD 115
L + + L FS +G I++ +++CD
Sbjct: 106 LDDSIDNKALYDTFSAFGDILSCKVVCD 133
Score = 143 (55.4 bits), Expect = 6.8e-09, P = 6.8e-09
Identities = 34/125 (27%), Positives = 60/125 (48%)
Query: 20 FSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSES 77
F D C + S GYGFV++ E A +AI T+NG+ L ++ + V + +R E
Sbjct: 122 FGDILSCKVVCDEYGSRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRREREL 181
Query: 78 IKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGR 131
GA N+Y+ + M + L+ +FS +G ++ +++ DN G + G
Sbjct: 182 EYGAKVMEFTNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSGRSRGFGFVNYGNH 241
Query: 132 ERLRR 136
E ++
Sbjct: 242 EEAQK 246
Score = 89 (36.4 bits), Expect = 3.9e-06, Sum P(2) = 3.9e-06
Identities = 17/50 (34%), Positives = 30/50 (60%)
Query: 27 VFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
V + ++ +S G+GFVNY E+A+KA+ +NG + + + V A+ E
Sbjct: 222 VMMDNSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQKRIE 271
Score = 73 (30.8 bits), Expect = 3.9e-06, Sum P(2) = 3.9e-06
Identities = 18/51 (35%), Positives = 26/51 (50%)
Query: 79 KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLG 129
+G NLYV L + L FSPYG I +++++ TE G + G G
Sbjct: 292 QGVNLYVKNLDDGIDDDRLRKEFSPYGTITSTKVM-----TEGG-HSKGFG 336
>CGD|CAL0001392 [details] [associations]
symbol:orf19.3037 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0006446 "regulation of translational initiation"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 CGD:CAL0001392
GO:GO:0005634 GO:GO:0005737 EMBL:AACQ01000017 EMBL:AACQ01000015
GO:GO:0006417 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HSSP:P11940
RefSeq:XP_721264.1 RefSeq:XP_721535.1 ProteinModelPortal:Q5AI15
SMR:Q5AI15 STRING:Q5AI15 PRIDE:Q5AI15 GeneID:3636891 GeneID:3637079
KEGG:cal:CaO19.10555 KEGG:cal:CaO19.3037 Uniprot:Q5AI15
Length = 629
Score = 143 (55.4 bits), Expect = 6.8e-09, P = 6.8e-09
Identities = 29/97 (29%), Positives = 54/97 (55%)
Query: 21 SDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESI 78
S +C +S +SLGY +VNYH+ ED EKAI LN ++ + ++ +++ PS+
Sbjct: 79 SSIRVCRDAVSK-KSLGYAYVNYHKYEDGEKAIEELNYNPIEGRPCRIMWSQRDPSARRS 137
Query: 79 KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
N+++ L + + L FS +G+I++ ++ D
Sbjct: 138 GDGNIFIKNLHPAIDNKALHDTFSAFGKILSCKVATD 174
Score = 116 (45.9 bits), Expect = 5.3e-06, P = 5.3e-06
Identities = 30/82 (36%), Positives = 45/82 (54%)
Query: 34 QSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYA-----RPSS-ESIKG--ANLYV 85
QS +GFV+Y E AE AI +NG+ L ++ + V R S E +K N+YV
Sbjct: 178 QSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFEEMKANFTNIYV 237
Query: 86 SGLPKHMSQQELESLFSPYGRI 107
+ + S++ E LFSP+G+I
Sbjct: 238 KNIDLNYSEESFEKLFSPFGKI 259
>UNIPROTKB|Q98SP8 [details] [associations]
symbol:epabp-a "Embryonic polyadenylate-binding protein A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043009 "chordate
embryonic development" evidence=IEP] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0043009 GO:GO:0060212 GO:GO:0008143
HOVERGEN:HBG002295 EMBL:AF338225 EMBL:BC080020
RefSeq:NP_001082094.1 UniGene:Xl.777 ProteinModelPortal:Q98SP8
SMR:Q98SP8 PRIDE:Q98SP8 GeneID:398221 KEGG:xla:398221 CTD:398221
Xenbase:XB-GENE-5742498 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 Uniprot:Q98SP8
Length = 629
Score = 141 (54.7 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 24/88 (27%), Positives = 54/88 (61%)
Query: 30 ISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSG 87
I+T +SL Y ++N+ +P DAE+A++T+N ++ + I++ +++ P N+++
Sbjct: 46 IATRRSLSYAYINFQQPADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKN 105
Query: 88 LPKHMSQQELESLFSPYGRIITSRILCD 115
L + + + L FS +G I++ +++CD
Sbjct: 106 LDESIDNKALYDTFSAFGNILSCKVVCD 133
Score = 131 (51.2 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 32/125 (25%), Positives = 59/125 (47%)
Query: 20 FSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSES 77
F + C + S GYGFV++ E A +AI T+NG+ L ++ + V + +R E
Sbjct: 122 FGNILSCKVVCDEHGSRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFKSRREREL 181
Query: 78 IKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGR 131
GA N+Y+ + M + L +FS +G ++ +++ D+ G + G
Sbjct: 182 EYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNH 241
Query: 132 ERLRR 136
E ++
Sbjct: 242 EEAQK 246
>UNIPROTKB|E1BWJ7 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 GeneTree:ENSGT00640000091232
EMBL:AADN02019326 EMBL:AADN02019327 IPI:IPI00570679
RefSeq:XP_417367.2 ProteinModelPortal:E1BWJ7
Ensembl:ENSGALT00000006565 GeneID:419189 KEGG:gga:419189
OMA:QTISARV NextBio:20822287 Uniprot:E1BWJ7
Length = 632
Score = 141 (54.7 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 25/95 (26%), Positives = 57/95 (60%)
Query: 30 ISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSG 87
+++ +SLGY ++N+ +P DAE+A++T+N ++ + +++ +++ P N+++
Sbjct: 46 VASRRSLGYAYINFQQPADAERALDTMNFEVIKGRPVRIMWSQRDPGLRKSGVGNVFIKN 105
Query: 88 LPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
L + + L FS +G I++ +++CD ENG
Sbjct: 106 LDDSIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 121 (47.7 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 29/111 (26%), Positives = 54/111 (48%)
Query: 20 FSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSES 77
F + C + S G+GFV++ E A +AI T+NG+ L ++ + V + +R E+
Sbjct: 122 FGNILSCKVVCDENGSRGHGFVHFETQEAATRAIQTMNGMLLNDRKVFVGHFKSRKEREA 181
Query: 78 IKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
GA N+Y+ M L +FS +G+ ++ +++ D+ G
Sbjct: 182 EFGARAMEFTNVYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMDHTGRSKG 232
>ZFIN|ZDB-GENE-020419-22 [details] [associations]
symbol:sf3b4 "splicing factor 3b, subunit 4"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-020419-22 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295 EMBL:AY099515
IPI:IPI00495328 UniGene:Dr.1505 ProteinModelPortal:Q8JGT1
SMR:Q8JGT1 STRING:Q8JGT1 InParanoid:Q8JGT1 ArrayExpress:Q8JGT1
Uniprot:Q8JGT1
Length = 400
Score = 138 (53.6 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 34/97 (35%), Positives = 56/97 (57%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIK-GANLYVSGLPK 90
T Q GYGFV + EDA+ AI +N ++L K I+V+ A ++++ GAN+++ L
Sbjct: 50 TGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDP 109
Query: 91 HMSQQELESLFSPYGRII-TSRILCDNLATENGKYYS 126
+ ++ L FS +G I+ T +I+ D T N K Y+
Sbjct: 110 EIDEKLLYDTFSAFGVILQTPKIMRDP-DTGNSKGYA 145
>UNIPROTKB|H9L019 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 KO:K12831 OMA:VSETLLW CTD:10262
EMBL:AADN02044320 RefSeq:XP_423721.2 UniGene:Gga.51399
ProteinModelPortal:H9L019 Ensembl:ENSGALT00000021786 GeneID:426042
KEGG:gga:426042 Uniprot:H9L019
Length = 418
Score = 138 (53.6 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 34/97 (35%), Positives = 56/97 (57%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIK-GANLYVSGLPK 90
T Q GYGFV + EDA+ AI +N ++L K I+V+ A ++++ GAN+++ L
Sbjct: 50 TGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDP 109
Query: 91 HMSQQELESLFSPYGRII-TSRILCDNLATENGKYYS 126
+ ++ L FS +G I+ T +I+ D T N K Y+
Sbjct: 110 EIDEKLLYDTFSAFGVILQTPKIMRDP-DTGNSKGYA 145
>DICTYBASE|DDB_G0293558 [details] [associations]
symbol:pabpc1A "polyadenylate binding protein (PABP)"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA;ISS] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 dictyBase:DDB_G0293558 GO:GO:0005634 GO:GO:0045335
GenomeReviews:CM000155_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006378 EMBL:AAFI02000218 eggNOG:COG0724 GO:GO:0008143
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HSSP:P11940 OMA:ITEKNQQ RefSeq:XP_629007.1
ProteinModelPortal:Q54BM2 SMR:Q54BM2 STRING:Q54BM2 PRIDE:Q54BM2
EnsemblProtists:DDB0233359 GeneID:8629291 KEGG:ddi:DDB_G0293558
ProtClustDB:CLSZ2846557 Uniprot:Q54BM2
Length = 565
Score = 140 (54.3 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 27/94 (28%), Positives = 54/94 (57%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGL 88
+T +SL Y +VNY+ DAE+A++TLN ++ K ++ +++ PS N+++ L
Sbjct: 46 NTRRSLSYAYVNYYNGADAERALDTLNNTPIRGKACRIMWSQRDPSLRKSGVGNVFIKNL 105
Query: 89 PKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K + + L FS +G I++ +++ D+ + G
Sbjct: 106 DKGIDHKALYDTFSAFGNILSCKVVTDDGNSSKG 139
Score = 118 (46.6 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 27/93 (29%), Positives = 45/93 (48%)
Query: 35 SLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE-----SIKGANLYVSGLP 89
S G+GFV+Y E A+KAI +NG+ + + + V + S E +K N++ L
Sbjct: 137 SKGFGFVHYETQESADKAIAKVNGMMINGQKVFVGPFKSSKERGQPTEVKFTNVFFKNLS 196
Query: 90 KHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ + +L+ L YG I I+ D+ G
Sbjct: 197 EDVGPDQLKELLQQYGEITNITIMADDKGKSKG 229
>UNIPROTKB|H0YBQ4 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519596
Uniprot:H0YBQ4
Length = 258
Score = 96 (38.9 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
+ +S G+GFV++ R EDA+KA++ +NG L K I V A+ E
Sbjct: 60 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVE 104
Score = 70 (29.7 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 79 KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+G NLYV L + + L FSP+G I +++++ +
Sbjct: 125 QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME 161
>UNIPROTKB|F1MWR2 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 KO:K12831 OMA:VSETLLW CTD:10262
EMBL:DAAA02007272 IPI:IPI00717302 RefSeq:NP_001192513.1
UniGene:Bt.3914 ProteinModelPortal:F1MWR2
Ensembl:ENSBTAT00000016577 GeneID:506123 KEGG:bta:506123
NextBio:20867458 ArrayExpress:F1MWR2 Uniprot:F1MWR2
Length = 424
Score = 138 (53.6 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 34/97 (35%), Positives = 56/97 (57%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIK-GANLYVSGLPK 90
T Q GYGFV + EDA+ AI +N ++L K I+V+ A ++++ GAN+++ L
Sbjct: 50 TGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDP 109
Query: 91 HMSQQELESLFSPYGRII-TSRILCDNLATENGKYYS 126
+ ++ L FS +G I+ T +I+ D T N K Y+
Sbjct: 110 EIDEKLLYDTFSAFGVILQTPKIMRDP-DTGNSKGYA 145
>UNIPROTKB|E2R5T2 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 GO:GO:0005689 KO:K12831 OMA:VSETLLW
CTD:10262 EMBL:AAEX03011046 EMBL:AAEX03011045 RefSeq:XP_540295.3
ProteinModelPortal:E2R5T2 Ensembl:ENSCAFT00000018450 GeneID:483177
KEGG:cfa:483177 NextBio:20857615 Uniprot:E2R5T2
Length = 424
Score = 138 (53.6 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 34/97 (35%), Positives = 56/97 (57%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIK-GANLYVSGLPK 90
T Q GYGFV + EDA+ AI +N ++L K I+V+ A ++++ GAN+++ L
Sbjct: 50 TGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDP 109
Query: 91 HMSQQELESLFSPYGRII-TSRILCDNLATENGKYYS 126
+ ++ L FS +G I+ T +I+ D T N K Y+
Sbjct: 110 EIDEKLLYDTFSAFGVILQTPKIMRDP-DTGNSKGYA 145
>UNIPROTKB|Q15427 [details] [associations]
symbol:SF3B4 "Splicing factor 3B subunit 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=TAS] [GO:0000375 "RNA splicing, via transesterification
reactions" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;TAS] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005654
GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471121 GO:GO:0000398 EMBL:AL591493 eggNOG:COG0724
HOVERGEN:HBG002295 GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831
EMBL:AL590487 OMA:VSETLLW EMBL:L35013 EMBL:BC004273 EMBL:BC013886
EMBL:BC090883 IPI:IPI00017339 PIR:A54964 RefSeq:NP_005841.1
UniGene:Hs.516160 PDB:1X5T PDB:1X5U PDBsum:1X5T PDBsum:1X5U
ProteinModelPortal:Q15427 SMR:Q15427 IntAct:Q15427
MINT:MINT-1032702 STRING:Q15427 PhosphoSite:Q15427 DMDM:2500587
PaxDb:Q15427 PeptideAtlas:Q15427 PRIDE:Q15427 DNASU:10262
Ensembl:ENST00000271628 Ensembl:ENST00000582851 GeneID:10262
KEGG:hsa:10262 UCSC:uc001etk.2 CTD:10262 GeneCards:GC01M149895
HGNC:HGNC:10771 HPA:HPA028578 MIM:154400 MIM:605593
neXtProt:NX_Q15427 Orphanet:245 PharmGKB:PA35689 InParanoid:Q15427
OrthoDB:EOG4M65JJ PhylomeDB:Q15427 EvolutionaryTrace:Q15427
GenomeRNAi:10262 NextBio:38880 ArrayExpress:Q15427 Bgee:Q15427
CleanEx:HS_SF3B4 Genevestigator:Q15427 GermOnline:ENSG00000143368
Uniprot:Q15427
Length = 424
Score = 138 (53.6 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 34/97 (35%), Positives = 56/97 (57%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIK-GANLYVSGLPK 90
T Q GYGFV + EDA+ AI +N ++L K I+V+ A ++++ GAN+++ L
Sbjct: 50 TGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDP 109
Query: 91 HMSQQELESLFSPYGRII-TSRILCDNLATENGKYYS 126
+ ++ L FS +G I+ T +I+ D T N K Y+
Sbjct: 110 EIDEKLLYDTFSAFGVILQTPKIMRDP-DTGNSKGYA 145
>UNIPROTKB|F1SDG0 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005689 "U12-type spliceosomal complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 GO:GO:0005689 KO:K12831 OMA:VSETLLW
CTD:10262 EMBL:CU468464 RefSeq:XP_001926524.1 UniGene:Ssc.3222
ProteinModelPortal:F1SDG0 Ensembl:ENSSSCT00000007303
GeneID:100157814 KEGG:ssc:100157814 Uniprot:F1SDG0
Length = 424
Score = 138 (53.6 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 34/97 (35%), Positives = 56/97 (57%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIK-GANLYVSGLPK 90
T Q GYGFV + EDA+ AI +N ++L K I+V+ A ++++ GAN+++ L
Sbjct: 50 TGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDP 109
Query: 91 HMSQQELESLFSPYGRII-TSRILCDNLATENGKYYS 126
+ ++ L FS +G I+ T +I+ D T N K Y+
Sbjct: 110 EIDEKLLYDTFSAFGVILQTPKIMRDP-DTGNSKGYA 145
>MGI|MGI:109580 [details] [associations]
symbol:Sf3b4 "splicing factor 3b, subunit 4" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109580 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GeneTree:ENSGT00690000101901 HSSP:Q15427 HOVERGEN:HBG002295
GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831 CTD:10262
OrthoDB:EOG4M65JJ EMBL:AK047751 EMBL:AK135543 EMBL:BC024418
EMBL:BC026567 EMBL:BC085273 IPI:IPI00154082 RefSeq:NP_694693.1
UniGene:Mm.219671 ProteinModelPortal:Q8QZY9 SMR:Q8QZY9
IntAct:Q8QZY9 STRING:Q8QZY9 PhosphoSite:Q8QZY9 PaxDb:Q8QZY9
PRIDE:Q8QZY9 Ensembl:ENSMUST00000076372 GeneID:107701
KEGG:mmu:107701 UCSC:uc008qme.1 InParanoid:Q8QZY9 OMA:FASISHH
NextBio:359278 Bgee:Q8QZY9 Genevestigator:Q8QZY9 Uniprot:Q8QZY9
Length = 424
Score = 138 (53.6 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 34/97 (35%), Positives = 56/97 (57%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIK-GANLYVSGLPK 90
T Q GYGFV + EDA+ AI +N ++L K I+V+ A ++++ GAN+++ L
Sbjct: 50 TGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDP 109
Query: 91 HMSQQELESLFSPYGRII-TSRILCDNLATENGKYYS 126
+ ++ L FS +G I+ T +I+ D T N K Y+
Sbjct: 110 EIDEKLLYDTFSAFGVILQTPKIMRDP-DTGNSKGYA 145
>RGD|1309667 [details] [associations]
symbol:Sf3b4 "splicing factor 3b, subunit 4" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA;ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309667 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GeneTree:ENSGT00690000101901 HSSP:Q15427 HOVERGEN:HBG002295
GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831 OMA:VSETLLW CTD:10262
OrthoDB:EOG4M65JJ EMBL:BC078997 IPI:IPI00371860
RefSeq:NP_001011951.1 UniGene:Rn.116275 ProteinModelPortal:Q6AYL5
SMR:Q6AYL5 STRING:Q6AYL5 PRIDE:Q6AYL5 Ensembl:ENSRNOT00000028758
GeneID:295270 KEGG:rno:295270 UCSC:RGD:1309667 InParanoid:Q6AYL5
NextBio:639268 Genevestigator:Q6AYL5 Uniprot:Q6AYL5
Length = 424
Score = 138 (53.6 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 34/97 (35%), Positives = 56/97 (57%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIK-GANLYVSGLPK 90
T Q GYGFV + EDA+ AI +N ++L K I+V+ A ++++ GAN+++ L
Sbjct: 50 TGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDP 109
Query: 91 HMSQQELESLFSPYGRII-TSRILCDNLATENGKYYS 126
+ ++ L FS +G I+ T +I+ D T N K Y+
Sbjct: 110 EIDEKLLYDTFSAFGVILQTPKIMRDP-DTGNSKGYA 145
>UNIPROTKB|Q800W4 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0042036 "negative regulation of cytokine biosynthetic process"
evidence=IEA] [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
HSSP:P11940 GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:TSAPWMG
UniGene:Gga.12064 UniGene:Gga.8269 EMBL:AADN02059907
EMBL:AADN02059908 EMBL:AADN02059909 EMBL:AY189903 IPI:IPI00577572
RefSeq:NP_001244132.1 SMR:Q800W4 STRING:Q800W4
Ensembl:ENSGALT00000022506 GeneID:771327 KEGG:gga:771327
InParanoid:Q800W4 NextBio:20921528 Uniprot:Q800W4
Length = 372
Score = 137 (53.3 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 31/104 (29%), Positives = 60/104 (57%)
Query: 26 CVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR-PSSESIKGAN-- 82
C ++ TA + Y FV ++ A A+ +NG ++ K +KV++A PSS+ +N
Sbjct: 36 CKMIMDTAGNDPYCFVEFYEHRHAASALAAMNGRKIMGKEVKVNWATTPSSQKKDTSNHF 95
Query: 83 -LYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYY 125
++V L ++ +++++ F+P+GRI +R++ D +AT K Y
Sbjct: 96 HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKD-MATGKSKGY 138
>ZFIN|ZDB-GENE-030131-5836 [details] [associations]
symbol:pabpc1l "poly(A) binding protein,
cytoplasmic 1-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-5836 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 CTD:80336
HSSP:P11940 EMBL:BC044513 IPI:IPI00863260 RefSeq:NP_956133.1
UniGene:Dr.14309 ProteinModelPortal:Q803E7 SMR:Q803E7 PRIDE:Q803E7
GeneID:327625 KEGG:dre:327625 NextBio:20810113 ArrayExpress:Q803E7
Bgee:Q803E7 Uniprot:Q803E7
Length = 620
Score = 140 (54.3 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 28/100 (28%), Positives = 59/100 (59%)
Query: 25 ICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGAN 82
+C +I T +SLGY ++N+ +P DAE A++T+N ++ + I++ +++ P N
Sbjct: 42 VCRDVI-TRRSLGYAYINFQQPADAECALDTMNYEVIKGRPIRIMWSQRDPGLRKSGVGN 100
Query: 83 LYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+++ + + + + L FS +G I++ +++CD ENG
Sbjct: 101 IFIKNMDESIDNKALYDTFSAFGNILSCKVVCD----ENG 136
Score = 123 (48.4 bits), Expect = 9.3e-07, P = 9.3e-07
Identities = 28/111 (25%), Positives = 57/111 (51%)
Query: 20 FSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSES 77
F + C + S GYGFV++ E A +AI T+NG+ L ++ + V + +R E+
Sbjct: 122 FGNILSCKVVCDENGSKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGHFKSRKEREA 181
Query: 78 IKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
GA N+Y+ + + ++L+++F+ +G+ ++ ++ D G
Sbjct: 182 EMGAKAVEFTNVYIKNFGEDIDSEKLKNIFTEFGKTLSVCVMTDERGRSRG 232
>UNIPROTKB|E7ETJ9 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC012468 HGNC:HGNC:11804
ChiTaRS:TIAL1 IPI:IPI00647436 ProteinModelPortal:E7ETJ9 SMR:E7ETJ9
Ensembl:ENST00000412524 ArrayExpress:E7ETJ9 Bgee:E7ETJ9
Uniprot:E7ETJ9
Length = 132
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 29/92 (31%), Positives = 55/92 (59%)
Query: 38 YGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR-PSSESIKGAN---LYVSGLPKHMS 93
Y FV ++ DA A+ +NG ++ K +KV++A PSS+ +N ++V L ++
Sbjct: 11 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEIT 70
Query: 94 QQELESLFSPYGRIITSRILCDNLATENGKYY 125
++++S F+P+G+I +R++ D +AT K Y
Sbjct: 71 TEDIKSAFAPFGKISDARVVKD-MATGKSKGY 101
>GENEDB_PFALCIPARUM|PFL1170w [details] [associations]
symbol:PFL1170w "polyadenylate-binding protein,
putative" species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 141 (54.7 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 31/97 (31%), Positives = 53/97 (54%)
Query: 21 SDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKV--SYARPSSESI 78
S +C + T +SLGY +VNYH DAE+A++TLN ++ + ++ S+ PS
Sbjct: 43 SSIRVCRDSV-TRKSLGYAYVNYHNLADAERALDTLNYTNIKGQPARLMWSHRDPSLRKS 101
Query: 79 KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
N++V L K + + L FS +G I++ ++ D
Sbjct: 102 GTGNIFVKNLDKSIDNKALFDTFSMFGNILSCKVATD 138
Score = 140 (54.3 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 31/87 (35%), Positives = 49/87 (56%)
Query: 34 QSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVS-YARPSSESI---KGANLYVSGLP 89
+S YGFV+Y E A++AI +NG++L +K + V + + S + K NLYV P
Sbjct: 142 KSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYVGPFIKKSERATNDTKFTNLYVKNFP 201
Query: 90 KHMSQQELESLFSPYGRIITSRILCDN 116
+++ L LF+PYG I + + DN
Sbjct: 202 DSVTETHLRQLFNPYGEITSMIVKMDN 228
>UNIPROTKB|Q8I5H4 [details] [associations]
symbol:PFL1170w "Polyadenylate-binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0006396 "RNA processing" evidence=ISS] [GO:0008143
"poly(A) RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 141 (54.7 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 31/97 (31%), Positives = 53/97 (54%)
Query: 21 SDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKV--SYARPSSESI 78
S +C + T +SLGY +VNYH DAE+A++TLN ++ + ++ S+ PS
Sbjct: 43 SSIRVCRDSV-TRKSLGYAYVNYHNLADAERALDTLNYTNIKGQPARLMWSHRDPSLRKS 101
Query: 79 KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
N++V L K + + L FS +G I++ ++ D
Sbjct: 102 GTGNIFVKNLDKSIDNKALFDTFSMFGNILSCKVATD 138
Score = 140 (54.3 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 31/87 (35%), Positives = 49/87 (56%)
Query: 34 QSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVS-YARPSSESI---KGANLYVSGLP 89
+S YGFV+Y E A++AI +NG++L +K + V + + S + K NLYV P
Sbjct: 142 KSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYVGPFIKKSERATNDTKFTNLYVKNFP 201
Query: 90 KHMSQQELESLFSPYGRIITSRILCDN 116
+++ L LF+PYG I + + DN
Sbjct: 202 DSVTETHLRQLFNPYGEITSMIVKMDN 228
>UNIPROTKB|H0YAR2 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519100
Uniprot:H0YAR2
Length = 284
Score = 107 (42.7 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 28/96 (29%), Positives = 48/96 (50%)
Query: 35 SLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSESIKGA------NLYVS 86
S GYGFV++ E AE+AI +NG+ L ++ + V +R E+ GA N+Y+
Sbjct: 9 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIK 68
Query: 87 GLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ M + L+ LF P ++ +++ D G
Sbjct: 69 NFGEDMDDERLKDLFGP---ALSVKVMTDESGKSKG 101
Score = 96 (38.9 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
+ +S G+GFV++ R EDA+KA++ +NG L K I V A+ E
Sbjct: 96 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVE 140
Score = 70 (29.7 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 79 KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+G NLYV L + + L FSP+G I +++++ +
Sbjct: 161 QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME 197
>FB|FBgn0035016 [details] [associations]
symbol:CG4612 species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE013599 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0008143 HSSP:P11940 eggNOG:NOG246493
GeneTree:ENSGT00630000089747 EMBL:AY060413 RefSeq:NP_001246492.1
RefSeq:NP_001246493.1 RefSeq:NP_611924.1 UniGene:Dm.773 SMR:Q9W158
IntAct:Q9W158 MINT:MINT-870450 STRING:Q9W158
EnsemblMetazoa:FBtr0072346 EnsemblMetazoa:FBtr0306137 GeneID:37914
KEGG:dme:Dmel_CG4612 UCSC:CG4612-RA FlyBase:FBgn0035016
InParanoid:Q9W158 OMA:EPYGRIT OrthoDB:EOG4KPRS4 GenomeRNAi:37914
NextBio:806022 Uniprot:Q9W158
Length = 307
Score = 134 (52.2 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 31/86 (36%), Positives = 45/86 (52%)
Query: 35 SLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVS--YARPSSESIKGA---NLYVSGLP 89
S GYGFV++ E A AI +NG+ N+ + V R E K NLYV L
Sbjct: 152 SRGYGFVHFDSEEAARAAIEKVNGMLCNNQKVHVVKFIPRRDREQEKATHFKNLYVKNLS 211
Query: 90 KHMSQQELESLFSPYGRIITSRILCD 115
+ ++Q L +F PYGRI + +++ D
Sbjct: 212 EEFTEQHLREMFEPYGRITSHKLMLD 237
>DICTYBASE|DDB_G0290745 [details] [associations]
symbol:pabpc1B "putative polyadenylate binding
protein (PABP)" species:44689 "Dictyostelium discoideum"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0006378 "mRNA polyadenylation" evidence=ISS] [GO:0005737
"cytoplasm" evidence=IEA;ISS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 dictyBase:DDB_G0290745 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378
GenomeReviews:CM000154_GR eggNOG:COG0724 EMBL:AAFI02000169
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
RefSeq:XP_001134510.1 ProteinModelPortal:Q1ZXC2 SMR:Q1ZXC2
EnsemblProtists:DDB0233386 GeneID:8627795 KEGG:ddi:DDB_G0290745
OMA:NAIASIH Uniprot:Q1ZXC2
Length = 814
Score = 140 (54.3 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 35/114 (30%), Positives = 60/114 (52%)
Query: 2 VYQTLLNKLFTYEKV-HLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLR 60
V + +LN+LF+ KV + +C +T +SLGY +VN+ DAE+A++TLN
Sbjct: 195 VNEIILNELFS--KVGRNAIASIHVCRDS-NTLRSLGYAYVNFFNNHDAERALDTLNYTL 251
Query: 61 LQNKTIKV--SYARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRI 112
+ K ++ SY P+ N++V L K + L FS +G I++ ++
Sbjct: 252 VHGKPCRIMWSYRDPTKRKTNVGNIFVKNLEKGVDNAMLYDTFSSFGNILSCKV 305
>RGD|1563142 [details] [associations]
symbol:Pabpc1l "poly(A) binding protein, cytoplasmic 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1563142
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 OrthoDB:EOG4K6G3V
GeneTree:ENSGT00640000091232 IPI:IPI00778604
ProteinModelPortal:D3ZAS7 Ensembl:ENSRNOT00000055172
UCSC:RGD:1563142 Uniprot:D3ZAS7
Length = 607
Score = 138 (53.6 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 33/96 (34%), Positives = 55/96 (57%)
Query: 35 SLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSESIKGA------NLYVS 86
S G+GFV++ E A+KAINT+NG+ L ++ + V + +R E+ GA N+YV
Sbjct: 137 SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKREAELGARALGFTNIYVK 196
Query: 87 GLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
L M +Q L+ LFS +G+ + +++ D+ G
Sbjct: 197 NLRVDMDEQGLQDLFSQFGKTQSVKVMRDSNGQSRG 232
Score = 135 (52.6 bits), Expect = 4.6e-08, P = 4.6e-08
Identities = 24/86 (27%), Positives = 52/86 (60%)
Query: 30 ISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKV--SYARPSSESIKGANLYVSG 87
++T +SLGY ++N+ +P DAE+A++T+N ++ + I++ S+ P N+++
Sbjct: 46 VATRRSLGYAYINFQQPADAERALDTMNFEMIKGQPIRIMWSHRDPGLRRSGMGNIFIKN 105
Query: 88 LPKHMSQQELESLFSPYGRIITSRIL 113
L + + L FS +G I++S+++
Sbjct: 106 LENSIDNKALYDTFSTFGSILSSKVV 131
Score = 92 (37.4 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 16/46 (34%), Positives = 30/46 (65%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
S QS G+GF+N+ + E+A+KA++ +NG + + + V A+ +E
Sbjct: 226 SNGQSRGFGFINFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAE 271
Score = 70 (29.7 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 12/38 (31%), Positives = 24/38 (63%)
Query: 79 KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
+G NLYV L ++ L+ +FS YG I +++++ ++
Sbjct: 292 QGVNLYVKNLDDSINDDRLKEVFSTYGVITSAKVMTES 329
>UNIPROTKB|H3BPI5 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL359757 HGNC:HGNC:8556 ProteinModelPortal:H3BPI5 SMR:H3BPI5
Ensembl:ENST00000562709 Bgee:H3BPI5 Uniprot:H3BPI5
Length = 255
Score = 131 (51.2 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 30/100 (30%), Positives = 56/100 (56%)
Query: 25 ICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGAN 82
IC LI++ S Y +VN+ +DAE A++T+N ++ K +++ +++ PS N
Sbjct: 42 ICRDLITSGSS-NYAYVNFQHTKDAEHALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGN 100
Query: 83 LYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
++V L K ++ + L S +G I++ ++CD ENG
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCD----ENG 136
Score = 124 (48.7 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 33/124 (26%), Positives = 57/124 (45%)
Query: 7 LNKLFTYEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTI 66
+N Y+ V F + C + S GYGFV++ E AE+AI +NG+ L + +
Sbjct: 110 INNKALYDTVS-AFGNILSCNVVCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKV 168
Query: 67 KVSY--ARPSSESIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLA 118
V +R E+ GA N+Y+ + M + L+ LF +G ++ +++ D
Sbjct: 169 FVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESG 228
Query: 119 TENG 122
G
Sbjct: 229 KSKG 232
>ASPGD|ASPL0000000406 [details] [associations]
symbol:AN6501 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BN001301 EMBL:AACD01000109
eggNOG:COG0724 HOGENOM:HOG000200535 KO:K12831 OrthoDB:EOG4Q886Z
RefSeq:XP_664105.1 ProteinModelPortal:Q5AYX9 SMR:Q5AYX9
STRING:Q5AYX9 EnsemblFungi:CADANIAT00007269 GeneID:2870231
KEGG:ani:AN6501.2 OMA:GDQAERM Uniprot:Q5AYX9
Length = 352
Score = 133 (51.9 bits), Expect = 3.0e-08, P = 3.0e-08
Identities = 30/79 (37%), Positives = 46/79 (58%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE-SIK-GANLYVSGLP 89
T GYGFV ++ EDAE A +NG+RL K I+V+ A + S++ GA L+V L
Sbjct: 50 TQSHQGYGFVEFNSEEDAEYASRIMNGIRLYGKPIRVNKASADKQKSVEIGAELFVGNLD 109
Query: 90 KHMSQQELESLFSPYGRII 108
+++Q L FS +G ++
Sbjct: 110 PMVTEQVLYDTFSRFGNLV 128
>WB|WBGene00003902 [details] [associations]
symbol:pab-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0040010 "positive regulation of growth
rate" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0007276 "gamete generation" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0043186
"P granule" evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0040035 GO:GO:0000932 GO:GO:0007276 GO:GO:0043186 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AL032631 HSSP:P11940 GeneTree:ENSGT00640000091232
GeneID:172920 KEGG:cel:CELE_Y106G6H.2 UCSC:Y106G6H.2b CTD:172920
NextBio:877531 PIR:T26427 RefSeq:NP_001021709.1
ProteinModelPortal:Q9U302 SMR:Q9U302 DIP:DIP-26308N IntAct:Q9U302
MINT:MINT-226577 STRING:Q9U302 PRIDE:Q9U302
EnsemblMetazoa:Y106G6H.2a.1 EnsemblMetazoa:Y106G6H.2a.2
EnsemblMetazoa:Y106G6H.2a.3 EnsemblMetazoa:Y106G6H.2a.4
EnsemblMetazoa:Y106G6H.2a.5 EnsemblMetazoa:Y106G6H.2a.6
WormBase:Y106G6H.2a InParanoid:Q9U302 OMA:CKVAMDE
ArrayExpress:Q9U302 Uniprot:Q9U302
Length = 646
Score = 135 (52.6 bits), Expect = 5.1e-08, P = 5.1e-08
Identities = 25/87 (28%), Positives = 51/87 (58%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGL 88
+T SLGY +VN+ +P DAE+A++T+N L K +++ +++ P+ N+++ L
Sbjct: 68 ATRLSLGYAYVNFQQPADAERAMDTMNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNL 127
Query: 89 PKHMSQQELESLFSPYGRIITSRILCD 115
K + + + FS +G I++ ++ D
Sbjct: 128 DKVIDNKSIYDTFSLFGNILSCKVAID 154
Score = 117 (46.2 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 36/103 (34%), Positives = 53/103 (51%)
Query: 35 SLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSS-------ESIKG-ANLYVS 86
S GYGFV++ E A+ AI +NG+ L K + V +P + E+ K N+YV
Sbjct: 159 SKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNRELGETAKQFTNVYVK 218
Query: 87 GLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLG 129
H +++ LE LF+ +G I TS C+ + E GK G G
Sbjct: 219 NFGDHYNKETLEKLFAKFGNI-TS---CEVMTVE-GKS-KGFG 255
Score = 97 (39.2 bits), Expect = 4.6e-08, Sum P(2) = 4.6e-08
Identities = 21/72 (29%), Positives = 36/72 (50%)
Query: 12 TYEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYA 71
T EK+ F + C + +S G+GFV + PE+AE A+ L+ ++ +K+
Sbjct: 228 TLEKLFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHVC 287
Query: 72 RPSSESIKGANL 83
R +S + A L
Sbjct: 288 RAQKKSERHAEL 299
Score = 73 (30.8 bits), Expect = 4.6e-08, Sum P(2) = 4.6e-08
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLG 129
+ +G NLYV L + + L+ F YG I +++++ D ENG+ G G
Sbjct: 312 QKYQGVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTD----ENGRS-KGFG 360
>DICTYBASE|DDB_G0274523 [details] [associations]
symbol:DDB_G0274523 "RNA recognition motif-containing
protein RRM" species:44689 "Dictyostelium discoideum" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0274523 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000012 eggNOG:COG0724
RefSeq:XP_644081.1 ProteinModelPortal:Q86HL7 PRIDE:Q86HL7
EnsemblProtists:DDB0233759 GeneID:8619510 KEGG:ddi:DDB_G0274523
InParanoid:Q86HL7 OMA:QNNHHDP Uniprot:Q86HL7
Length = 904
Score = 137 (53.3 bits), Expect = 4.8e-08, P = 4.8e-08
Identities = 30/94 (31%), Positives = 53/94 (56%)
Query: 27 VFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTI--KVS--YARPSSESIKGAN 82
V + S GYGFV + P+++ AI L+G + QNK + ++S Y +S+ N
Sbjct: 140 VMIDPKGNSYGYGFVRFSSPQESAAAIEELDGYQYQNKKLLCRLSNLYTNLNSK-YPSNN 198
Query: 83 LYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
L++ LP ++ +L LF P+G+II +++ D+
Sbjct: 199 LFIKPLPYDVTDDQLRKLFEPFGKIIECKVMLDH 232
>UNIPROTKB|H3BNY3 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL359757 TIGRFAMs:TIGR01628
HGNC:HGNC:8556 ProteinModelPortal:H3BNY3 SMR:H3BNY3
Ensembl:ENST00000569397 Bgee:H3BNY3 Uniprot:H3BNY3
Length = 347
Score = 131 (51.2 bits), Expect = 4.9e-08, P = 4.9e-08
Identities = 30/100 (30%), Positives = 56/100 (56%)
Query: 25 ICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGAN 82
IC LI++ S Y +VN+ +DAE A++T+N ++ K +++ +++ PS N
Sbjct: 42 ICRDLITSGSS-NYAYVNFQHTKDAEHALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGN 100
Query: 83 LYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
++V L K ++ + L S +G I++ ++CD ENG
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCD----ENG 136
Score = 124 (48.7 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 33/124 (26%), Positives = 57/124 (45%)
Query: 7 LNKLFTYEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTI 66
+N Y+ V F + C + S GYGFV++ E AE+AI +NG+ L + +
Sbjct: 110 INNKALYDTVS-AFGNILSCNVVCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKV 168
Query: 67 KVSY--ARPSSESIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLA 118
V +R E+ GA N+Y+ + M + L+ LF +G ++ +++ D
Sbjct: 169 FVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESG 228
Query: 119 TENG 122
G
Sbjct: 229 KSKG 232
Score = 96 (38.9 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
+ +S G+GFV++ R EDA+KA++ +NG L K I V A+ E
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVE 271
Score = 65 (27.9 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 82 NLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
NLYV L + + L FSP+G I +++++ +
Sbjct: 295 NLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME 328
>UNIPROTKB|H0YEQ8 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000470443 Uniprot:H0YEQ8
Length = 112
Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 27/88 (30%), Positives = 52/88 (59%)
Query: 42 NYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLPKHMSQQELES 99
N+ +P DAE+A++T+N ++ K I++ +++ PS N+++ L K + + L
Sbjct: 2 NFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYD 61
Query: 100 LFSPYGRIITSRILCDNLATENG-KYYS 126
FS +G I++ +++CD ENG K Y+
Sbjct: 62 TFSAFGNILSCKVVCD----ENGSKGYA 85
>UNIPROTKB|Q01085 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0003723 "RNA binding" evidence=TAS] [GO:0006952
"defense response" evidence=TAS] [GO:0005764 "lysosome"
evidence=TAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006917 "induction of
apoptosis" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0006915 GO:GO:0006952 GO:GO:0006917 GO:GO:0000166
GO:GO:0008284 Gene3D:3.30.70.330 GO:GO:0006357 GO:GO:0005764
GO:GO:0003723 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:M96954 EMBL:AK290695
EMBL:AK290984 IPI:IPI00005615 IPI:IPI00644708 PIR:A46174
RefSeq:NP_001029097.1 RefSeq:NP_003243.1 UniGene:Hs.501203 PDB:1X4G
PDB:2CQI PDB:2DH7 PDBsum:1X4G PDBsum:2CQI PDBsum:2DH7
ProteinModelPortal:Q01085 SMR:Q01085 DIP:DIP-42425N IntAct:Q01085
MINT:MINT-1203913 STRING:Q01085 PhosphoSite:Q01085 DMDM:267131
PaxDb:Q01085 PRIDE:Q01085 Ensembl:ENST00000369093
Ensembl:ENST00000436547 GeneID:7073 KEGG:hsa:7073 UCSC:uc001lei.1
CTD:7073 GeneCards:GC10M121324 HGNC:HGNC:11804 MIM:603413
neXtProt:NX_Q01085 PharmGKB:PA36513 OMA:EEVYNQS PhylomeDB:Q01085
ChiTaRS:TIAL1 EvolutionaryTrace:Q01085 GenomeRNAi:7073
NextBio:27661 ArrayExpress:Q01085 Bgee:Q01085 CleanEx:HS_TIAL1
Genevestigator:Q01085 GermOnline:ENSG00000151923 Uniprot:Q01085
Length = 375
Score = 130 (50.8 bits), Expect = 7.3e-08, P = 7.3e-08
Identities = 30/104 (28%), Positives = 58/104 (55%)
Query: 26 CVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR-PSSESIKGAN-- 82
C + + Y FV ++ DA A+ +NG ++ K +KV++A PSS+ +N
Sbjct: 38 CKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHF 97
Query: 83 -LYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYY 125
++V L ++ ++++S F+P+G+I +R++ D +AT K Y
Sbjct: 98 HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKD-MATGKSKGY 140
>UNIPROTKB|F2Z4H8 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017145 "stem cell division" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA] [GO:0008284 "positive regulation of
cell proliferation" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:NGSKQLR
EMBL:DAAA02059399 IPI:IPI00707976 RefSeq:NP_001179985.1
UniGene:Bt.15754 ProteinModelPortal:F2Z4H8
Ensembl:ENSBTAT00000005331 GeneID:614540 KEGG:bta:614540
NextBio:20899153 Uniprot:F2Z4H8
Length = 380
Score = 130 (50.8 bits), Expect = 7.5e-08, P = 7.5e-08
Identities = 30/104 (28%), Positives = 58/104 (55%)
Query: 26 CVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR-PSSESIKGAN-- 82
C + + Y FV ++ DA A+ +NG ++ K +KV++A PSS+ +N
Sbjct: 38 CKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHF 97
Query: 83 -LYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYY 125
++V L ++ ++++S F+P+G+I +R++ D +AT K Y
Sbjct: 98 HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKD-MATGKSKGY 140
>UNIPROTKB|E7ERJ7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00909378
ProteinModelPortal:E7ERJ7 SMR:E7ERJ7 PRIDE:E7ERJ7
Ensembl:ENST00000522387 UCSC:uc011lhc.1 ArrayExpress:E7ERJ7
Bgee:E7ERJ7 Uniprot:E7ERJ7
Length = 604
Score = 119 (46.9 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 28/96 (29%), Positives = 49/96 (51%)
Query: 35 SLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSESIKGA------NLYVS 86
S GYGFV++ E AE+AI +NG+ L ++ + V +R E+ GA N+Y+
Sbjct: 105 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIK 164
Query: 87 GLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ M + L+ LF +G ++ +++ D G
Sbjct: 165 NFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKG 200
Score = 97 (39.2 bits), Expect = 7.9e-08, Sum P(2) = 7.9e-08
Identities = 17/48 (35%), Positives = 35/48 (72%)
Query: 25 ICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR 72
+C +I T +SLGY +VN+ +P DAE+A++T+N ++ K +++ +++
Sbjct: 42 VCRDMI-TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 88
Score = 96 (38.9 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
+ +S G+GFV++ R EDA+KA++ +NG L K I V A+ E
Sbjct: 195 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVE 239
Score = 70 (29.7 bits), Expect = 7.9e-08, Sum P(2) = 7.9e-08
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 79 KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+G NLYV L + + L FSP+G I +++++ +
Sbjct: 260 QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME 296
>SGD|S000004961 [details] [associations]
symbol:PUB1 "Poly (A)+ RNA-binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0003729 "mRNA binding" evidence=IMP;IDA] [GO:0043488
"regulation of mRNA stability" evidence=IMP] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0034063
"stress granule assembly" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SGD:S000004961 GO:GO:0005634 GO:GO:0008266 GO:GO:0000184
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 EMBL:BK006947
GO:GO:0043488 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
EMBL:L13725 EMBL:L20767 EMBL:L01797 EMBL:Z71292 PIR:S62928
RefSeq:NP_014382.1 PDB:2LA4 PDB:3MD1 PDB:3MD3 PDBsum:2LA4
PDBsum:3MD1 PDBsum:3MD3 ProteinModelPortal:P32588 SMR:P32588
DIP:DIP-5480N IntAct:P32588 MINT:MINT-499485 STRING:P32588
PaxDb:P32588 PeptideAtlas:P32588 EnsemblFungi:YNL016W GeneID:855716
KEGG:sce:YNL016W GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748
KO:K13201 OMA:PAYNTTV OrthoDB:EOG4SN4XJ EvolutionaryTrace:P32588
NextBio:980072 Genevestigator:P32588 GermOnline:YNL016W
Uniprot:P32588
Length = 453
Score = 131 (51.2 bits), Expect = 8.0e-08, P = 8.0e-08
Identities = 28/105 (26%), Positives = 56/105 (53%)
Query: 23 AEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGA- 81
A I + + +++ Y FV YH+ DA A+ TLNG +++N +K+++A S +S
Sbjct: 102 ANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQQSSSDDT 161
Query: 82 -NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYY 125
NL+V L ++ + L + F + ++ ++ D + T + + Y
Sbjct: 162 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWD-MQTGSSRGY 205
>UNIPROTKB|F1NH82 [details] [associations]
symbol:F1NH82 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 GeneTree:ENSGT00640000091232 EMBL:AADN02025122
EMBL:AADN02025123 EMBL:AADN02025124 IPI:IPI00574035
Ensembl:ENSGALT00000023332 Uniprot:F1NH82
Length = 469
Score = 96 (38.9 bits), Expect = 8.1e-08, Sum P(2) = 8.1e-08
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
+ +S G+GFV++ R EDA+KA++ +NG L K I V A+ E
Sbjct: 59 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVE 103
Score = 70 (29.7 bits), Expect = 8.1e-08, Sum P(2) = 8.1e-08
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 79 KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+G NLYV L + + L FSP+G I +++++ +
Sbjct: 124 QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME 160
>UNIPROTKB|D4A964 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1595845 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00949247 Ensembl:ENSRNOT00000066938 Uniprot:D4A964
Length = 368
Score = 129 (50.5 bits), Expect = 9.1e-08, P = 9.1e-08
Identities = 29/92 (31%), Positives = 55/92 (59%)
Query: 38 YGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR-PSSESIKGAN---LYVSGLPKHMS 93
Y FV ++ DA A+ +NG ++ K +KV++A PSS+ +N ++V L ++
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEIT 126
Query: 94 QQELESLFSPYGRIITSRILCDNLATENGKYY 125
++++S F+P+G+I +R++ D +AT K Y
Sbjct: 127 TEDIKSAFAPFGKISDARVVKD-MATGKSKGY 157
>UNIPROTKB|P0CB38 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01628 EMBL:AC015631
EMBL:BX648831 IPI:IPI00885166 UniGene:Hs.49889
ProteinModelPortal:P0CB38 SMR:P0CB38 PhosphoSite:P0CB38
DMDM:259515737 PaxDb:P0CB38 PRIDE:P0CB38 Ensembl:ENST00000421491
UCSC:uc010ioe.3 GeneCards:GC04M135117 HGNC:HGNC:31955
neXtProt:NX_P0CB38 eggNOG:NOG246493 OrthoDB:EOG4M398T NextBio:83098
Bgee:P0CB38 Genevestigator:P0CB38 Uniprot:P0CB38
Length = 370
Score = 129 (50.5 bits), Expect = 9.2e-08, P = 9.2e-08
Identities = 25/87 (28%), Positives = 56/87 (64%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGA--NLYVSGLP 89
T +SLGY +VN+ + DA+KA++T+N ++ K+I++ +++ + + N+++ L
Sbjct: 47 TRRSLGYAYVNFLQLADAQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLD 106
Query: 90 KHMSQQELESLFSPYGRIITSRILCDN 116
K + + L FS +G+I++S+++ D+
Sbjct: 107 KSIDNKTLYEHFSAFGKILSSKVMSDD 133
Score = 102 (41.0 bits), Expect = 7.9e-05, P = 7.9e-05
Identities = 26/110 (23%), Positives = 50/110 (45%)
Query: 35 SLGYGFVNYHRPEDAEKAINTLNGLRLQN--------KTIKVSYARPSSESIKGANLYVS 86
S GY FV++ A++AI +NG L+ K K A S++ + N+Y+
Sbjct: 136 SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNVYIK 195
Query: 87 GLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLRR 136
M + L+ +FS YG+ ++ +++ D+ G + E ++
Sbjct: 196 NFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKK 245
>UNIPROTKB|F1LQ36 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1595845 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
GO:GO:0017145 GeneTree:ENSGT00680000099967 IPI:IPI00555194
Ensembl:ENSRNOT00000027463 Uniprot:F1LQ36
Length = 371
Score = 129 (50.5 bits), Expect = 9.3e-08, P = 9.3e-08
Identities = 29/92 (31%), Positives = 55/92 (59%)
Query: 38 YGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR-PSSESIKGAN---LYVSGLPKHMS 93
Y FV ++ DA A+ +NG ++ K +KV++A PSS+ +N ++V L ++
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEIT 126
Query: 94 QQELESLFSPYGRIITSRILCDNLATENGKYY 125
++++S F+P+G+I +R++ D +AT K Y
Sbjct: 127 TEDIKSAFAPFGKISDARVVKD-MATGKSKGY 157
>ZFIN|ZDB-GENE-030131-1506 [details] [associations]
symbol:tia1 "cytotoxic granule-associated RNA
binding protein 1" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-1506 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:WAVEPGQ
EMBL:CT027545 EMBL:AL928954 EMBL:BC045368 IPI:IPI00511851
RefSeq:NP_997793.1 UniGene:Dr.159520 SMR:Q7ZVY0
Ensembl:ENSDART00000074400 GeneID:793165 KEGG:dre:793165
InParanoid:Q7ZVY0 NextBio:20931339 Uniprot:Q7ZVY0
Length = 386
Score = 129 (50.5 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 30/104 (28%), Positives = 57/104 (54%)
Query: 26 CVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR-PSSESIKGAN-- 82
C ++ TA + Y FV + A ++ +NG ++ K +KV++A PSS+ +N
Sbjct: 37 CKMIVDTAGNDPYCFVEFFEHRHAAASLAAMNGRKIMGKEVKVNWATSPSSQKKDTSNHF 96
Query: 83 -LYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYY 125
++V L ++ ++ + F+P+GRI +R++ D +AT K Y
Sbjct: 97 HVFVGDLSPEITTDDIRAAFAPFGRISDARVVKD-MATGKSKGY 139
>UNIPROTKB|F1NY49 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00575679 Ensembl:ENSGALT00000015349 ArrayExpress:F1NY49
Uniprot:F1NY49
Length = 388
Score = 129 (50.5 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 29/92 (31%), Positives = 55/92 (59%)
Query: 38 YGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR-PSSESIKGAN---LYVSGLPKHMS 93
Y FV ++ DA A+ +NG ++ K +KV++A PSS+ +N ++V L ++
Sbjct: 66 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEIT 125
Query: 94 QQELESLFSPYGRIITSRILCDNLATENGKYY 125
++++S F+P+G+I +R++ D +AT K Y
Sbjct: 126 TEDIKSAFAPFGKISDARVVKD-MATGKSKGY 156
>UNIPROTKB|F1NS94 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00681845 Ensembl:ENSGALT00000029737 ArrayExpress:F1NS94
Uniprot:F1NS94
Length = 389
Score = 129 (50.5 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 29/92 (31%), Positives = 55/92 (59%)
Query: 38 YGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR-PSSESIKGAN---LYVSGLPKHMS 93
Y FV ++ DA A+ +NG ++ K +KV++A PSS+ +N ++V L ++
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEIT 126
Query: 94 QQELESLFSPYGRIITSRILCDNLATENGKYY 125
++++S F+P+G+I +R++ D +AT K Y
Sbjct: 127 TEDIKSAFAPFGKISDARVVKD-MATGKSKGY 157
>UNIPROTKB|E2RA41 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0017145 "stem cell division" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0008284 "positive
regulation of cell proliferation" evidence=IEA] [GO:0007281 "germ
cell development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:AAEX03015584 EMBL:AAEX03015585 RefSeq:XP_852319.1
ProteinModelPortal:E2RA41 SMR:E2RA41 Ensembl:ENSCAFT00000019370
GeneID:477841 KEGG:cfa:477841 NextBio:20853261 Uniprot:E2RA41
Length = 392
Score = 129 (50.5 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 29/92 (31%), Positives = 55/92 (59%)
Query: 38 YGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR-PSSESIKGAN---LYVSGLPKHMS 93
Y FV ++ DA A+ +NG ++ K +KV++A PSS+ +N ++V L ++
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEIT 126
Query: 94 QQELESLFSPYGRIITSRILCDNLATENGKYY 125
++++S F+P+G+I +R++ D +AT K Y
Sbjct: 127 TEDIKSAFAPFGKISDARVVKD-MATGKSKGY 157
>UNIPROTKB|F2Z5F9 [details] [associations]
symbol:LOC100736782 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:CT826370 EMBL:CT867965 RefSeq:XP_003133244.1 UniGene:Ssc.56271
ProteinModelPortal:F2Z5F9 SMR:F2Z5F9 Ensembl:ENSSSCT00000011686
GeneID:100158186 KEGG:ssc:100158186 Uniprot:F2Z5F9
Length = 392
Score = 129 (50.5 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 29/92 (31%), Positives = 55/92 (59%)
Query: 38 YGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR-PSSESIKGAN---LYVSGLPKHMS 93
Y FV ++ DA A+ +NG ++ K +KV++A PSS+ +N ++V L ++
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEIT 126
Query: 94 QQELESLFSPYGRIITSRILCDNLATENGKYY 125
++++S F+P+G+I +R++ D +AT K Y
Sbjct: 127 TEDIKSAFAPFGKISDARVVKD-MATGKSKGY 157
>MGI|MGI:107913 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0007281 "germ cell development" evidence=IMP] [GO:0008284
"positive regulation of cell proliferation" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0017145 "stem cell
division" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:107913
GO:GO:0005634 GO:GO:0006915 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 ChiTaRS:TIAL1
EMBL:U55861 IPI:IPI00108085 PIR:S72436 RefSeq:NP_033409.1
UniGene:Mm.242072 ProteinModelPortal:P70318 SMR:P70318
IntAct:P70318 STRING:P70318 PhosphoSite:P70318 PaxDb:P70318
PRIDE:P70318 Ensembl:ENSMUST00000106226 GeneID:21843 KEGG:mmu:21843
InParanoid:P70318 OMA:NGSKQLR NextBio:301310 Bgee:P70318
Genevestigator:P70318 GermOnline:ENSMUSG00000030846 Uniprot:P70318
Length = 392
Score = 129 (50.5 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 29/92 (31%), Positives = 55/92 (59%)
Query: 38 YGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR-PSSESIKGAN---LYVSGLPKHMS 93
Y FV ++ DA A+ +NG ++ K +KV++A PSS+ +N ++V L ++
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEIT 126
Query: 94 QQELESLFSPYGRIITSRILCDNLATENGKYY 125
++++S F+P+G+I +R++ D +AT K Y
Sbjct: 127 TEDIKSAFAPFGKISDARVVKD-MATGKSKGY 157
>RGD|1595845 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10116 "Rattus norvegicus" [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0007281 "germ cell development" evidence=ISO] [GO:0008284
"positive regulation of cell proliferation" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0017145 "stem cell
division" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1595845
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 EMBL:CH473956
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 IPI:IPI00555194
EMBL:BC091409 RefSeq:NP_001013211.1 UniGene:Rn.162475 SMR:Q5BJN3
STRING:Q5BJN3 GeneID:361655 KEGG:rno:361655 UCSC:RGD:1595845
InParanoid:Q5BJN3 NextBio:677112 Genevestigator:Q5BJN3
Uniprot:Q5BJN3
Length = 392
Score = 129 (50.5 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 29/92 (31%), Positives = 55/92 (59%)
Query: 38 YGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR-PSSESIKGAN---LYVSGLPKHMS 93
Y FV ++ DA A+ +NG ++ K +KV++A PSS+ +N ++V L ++
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEIT 126
Query: 94 QQELESLFSPYGRIITSRILCDNLATENGKYY 125
++++S F+P+G+I +R++ D +AT K Y
Sbjct: 127 TEDIKSAFAPFGKISDARVVKD-MATGKSKGY 157
>TAIR|locus:2046298 [details] [associations]
symbol:emb2444 "embryo defective 2444" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0009793 "embryo development ending in seed
dormancy" evidence=NAS] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002685 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC006135 HSSP:P11940
KO:K12831 EMBL:AY150466 IPI:IPI00516901 PIR:B84565
RefSeq:NP_179441.1 UniGene:At.20306 ProteinModelPortal:Q9ZU66
SMR:Q9ZU66 STRING:Q9ZU66 PRIDE:Q9ZU66 EnsemblPlants:AT2G18510.1
GeneID:816366 KEGG:ath:AT2G18510 TAIR:At2g18510 InParanoid:Q9ZU66
OMA:FIEYRSE PhylomeDB:Q9ZU66 ProtClustDB:CLSN2683050
Genevestigator:Q9ZU66 Uniprot:Q9ZU66
Length = 363
Score = 128 (50.1 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 29/80 (36%), Positives = 47/80 (58%)
Query: 38 YGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIK-GANLYVSGLPKHMSQQE 96
YGF+ Y EDA+ AI LN ++L K I+V+ A +S+ GANL++ L + ++
Sbjct: 68 YGFIEYRSEEDADYAIKVLNMIKLHGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKL 127
Query: 97 LESLFSPYGRIITS-RILCD 115
L FS +G I ++ +I+ D
Sbjct: 128 LYDTFSAFGVIASNPKIMRD 147
>WB|WBGene00003903 [details] [associations]
symbol:pab-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000003
GO:GO:0003723 eggNOG:COG0724 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
GeneTree:ENSGT00640000091232 EMBL:Z50110 PIR:T21095
RefSeq:NP_510260.1 ProteinModelPortal:Q19579 SMR:Q19579
STRING:Q19579 PaxDb:Q19579 PRIDE:Q19579 EnsemblMetazoa:F18H3.3a.1
EnsemblMetazoa:F18H3.3a.2 EnsemblMetazoa:F18H3.3a.3
EnsemblMetazoa:F18H3.3a.4 GeneID:181473 KEGG:cel:CELE_F18H3.3
UCSC:F18H3.3a.3 CTD:181473 WormBase:F18H3.3a InParanoid:Q19579
OMA:YEESNIG NextBio:914090 ArrayExpress:Q19579 Uniprot:Q19579
Length = 692
Score = 132 (51.5 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 27/119 (22%), Positives = 65/119 (54%)
Query: 7 LNKLFTYEKVHLGFSDAEICVFLISTAQ-SLGYGFVNYHRPEDAEKAINTLNGLRLQNKT 65
+++ +EK + I V +T++ SLGY +VN+ +P DAE+A++T+N + +
Sbjct: 68 VSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALDTMNFEVIHGRP 127
Query: 66 IKVSYAR--PSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+++ +++ P++ N+++ L + + + + FS +G I++ ++ D+ G
Sbjct: 128 MRIMWSQRDPAARRAGNGNIFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDEGNSKG 186
Score = 127 (49.8 bits), Expect = 4.0e-07, P = 4.0e-07
Identities = 27/89 (30%), Positives = 51/89 (57%)
Query: 35 SLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIK--G------ANLYVS 86
S GYGFV++ A+ AI +NG+ L +K + V +P ++ +K G N++V
Sbjct: 184 SKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYVGKFQPRAQRMKELGESGLKYTNVFVK 243
Query: 87 GLPKHMSQQELESLFSPYGRIITSRILCD 115
+H+ Q++L ++FS +G I ++ ++ D
Sbjct: 244 NFGEHLDQEKLSAMFSKFGEITSAVVMTD 272
>UNIPROTKB|J3KTH5 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126 TIGRFAMs:TIGR01628
EMBL:AC015631 UniGene:Hs.49889 HGNC:HGNC:31955
RefSeq:NP_001108206.2 ProteinModelPortal:J3KTH5
Ensembl:ENST00000529122 GeneID:132430 KEGG:hsa:132430 CTD:132430
Uniprot:J3KTH5
Length = 428
Score = 129 (50.5 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 25/87 (28%), Positives = 56/87 (64%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGA--NLYVSGLP 89
T +SLGY +VN+ + DA+KA++T+N ++ K+I++ +++ + + N+++ L
Sbjct: 105 TRRSLGYAYVNFLQLADAQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLD 164
Query: 90 KHMSQQELESLFSPYGRIITSRILCDN 116
K + + L FS +G+I++S+++ D+
Sbjct: 165 KSIDNKTLYEHFSAFGKILSSKVMSDD 191
Score = 102 (41.0 bits), Expect = 9.9e-05, P = 9.9e-05
Identities = 26/110 (23%), Positives = 50/110 (45%)
Query: 35 SLGYGFVNYHRPEDAEKAINTLNGLRLQN--------KTIKVSYARPSSESIKGANLYVS 86
S GY FV++ A++AI +NG L+ K K A S++ + N+Y+
Sbjct: 194 SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNVYIK 253
Query: 87 GLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLRR 136
M + L+ +FS YG+ ++ +++ D+ G + E ++
Sbjct: 254 NFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKK 303
>ZFIN|ZDB-GENE-030131-2167 [details] [associations]
symbol:tia1l "cytotoxic granule-associated RNA
binding protein 1, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-2167 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P11940 GeneTree:ENSGT00680000099967 KO:K13201
OMA:PAYNTTV HOVERGEN:HBG105006 EMBL:BX088551 EMBL:BC045485
EMBL:BC066734 IPI:IPI00499030 RefSeq:NP_956476.1 UniGene:Dr.5585
SMR:Q7ZVM6 Ensembl:ENSDART00000003957 GeneID:323447 KEGG:dre:323447
CTD:323447 InParanoid:Q7ZVM6 NextBio:20808253 Uniprot:Q7ZVM6
Length = 342
Score = 127 (49.8 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 31/104 (29%), Positives = 57/104 (54%)
Query: 26 CVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR-PSSESIKGAN-- 82
C ++ T + Y FV ++ A A+ +NG ++ K +KV++A PSS+ +N
Sbjct: 38 CKMILDTTGNDPYCFVEFYENRHAAAALAAMNGRKILGKDMKVNWASTPSSQKKDTSNHF 97
Query: 83 -LYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYY 125
++V L +S ++ + F+P+G+I +R++ D LAT K Y
Sbjct: 98 HVFVGDLSPEISTDDVRAAFAPFGKISDARVVKD-LATGKSKGY 140
Score = 109 (43.4 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 29/83 (34%), Positives = 46/83 (55%)
Query: 21 SDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKG 80
SDA + V ++T +S GYGF+++ DAE AI +NG L + I+ ++A + K
Sbjct: 124 SDARV-VKDLATGKSKGYGFISFINKWDAESAIQQMNGQWLGGRQIRTNWATRKPSAPKS 182
Query: 81 ANLYVSGLPKHMSQQELESLFSP 103
N S KH+S +E+ + SP
Sbjct: 183 NNEGASS--KHLSYEEVLNQSSP 203
>UNIPROTKB|Q9H361 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0016071 "mRNA metabolic
process" evidence=NAS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0016071 GO:GO:0000166 Gene3D:3.30.70.330
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HPA:HPA045423 EMBL:AF132026 EMBL:AL136900
EMBL:BC027617 IPI:IPI00301154 RefSeq:NP_112241.2 UniGene:Hs.458280
PDB:2D9P PDBsum:2D9P ProteinModelPortal:Q9H361 SMR:Q9H361
IntAct:Q9H361 STRING:Q9H361 PhosphoSite:Q9H361 DMDM:28201852
PaxDb:Q9H361 PRIDE:Q9H361 DNASU:5042 Ensembl:ENST00000281589
GeneID:5042 KEGG:hsa:5042 UCSC:uc001upy.3 CTD:5042
GeneCards:GC13P025670 HGNC:HGNC:8556 MIM:604680 neXtProt:NX_Q9H361
PharmGKB:PA32882 InParanoid:Q9H361 OMA:RTVPRYK OrthoDB:EOG4KH2TN
PhylomeDB:Q9H361 EvolutionaryTrace:Q9H361 GenomeRNAi:5042
NextBio:19414 ArrayExpress:Q9H361 Bgee:Q9H361 CleanEx:HS_PABPC3
Genevestigator:Q9H361 GermOnline:ENSG00000151846 Uniprot:Q9H361
Length = 631
Score = 131 (51.2 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 30/100 (30%), Positives = 56/100 (56%)
Query: 25 ICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGAN 82
IC LI++ S Y +VN+ +DAE A++T+N ++ K +++ +++ PS N
Sbjct: 42 ICRDLITSGSS-NYAYVNFQHTKDAEHALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGN 100
Query: 83 LYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
++V L K ++ + L S +G I++ ++CD ENG
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCD----ENG 136
Score = 124 (48.7 bits), Expect = 7.4e-07, P = 7.4e-07
Identities = 33/124 (26%), Positives = 57/124 (45%)
Query: 7 LNKLFTYEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTI 66
+N Y+ V F + C + S GYGFV++ E AE+AI +NG+ L + +
Sbjct: 110 INNKALYDTVS-AFGNILSCNVVCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKV 168
Query: 67 KVSY--ARPSSESIKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLA 118
V +R E+ GA N+Y+ + M + L+ LF +G ++ +++ D
Sbjct: 169 FVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESG 228
Query: 119 TENG 122
G
Sbjct: 229 KSKG 232
Score = 96 (38.9 bits), Expect = 5.7e-07, Sum P(2) = 5.7e-07
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
+ +S G+GFV++ R EDA+KA++ +NG L K I V A+ E
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVE 271
Score = 65 (27.9 bits), Expect = 5.7e-07, Sum P(2) = 5.7e-07
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 82 NLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
NLYV L + + L FSP+G I +++++ +
Sbjct: 295 NLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME 328
>UNIPROTKB|F1NH81 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
EMBL:AADN02025122 IPI:IPI00578358 Ensembl:ENSGALT00000023333
Uniprot:F1NH81
Length = 573
Score = 121 (47.7 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 30/111 (27%), Positives = 53/111 (47%)
Query: 20 FSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSES 77
F + C + S GYGFV++ E AE+AI +NG+ L ++ + V +R E+
Sbjct: 58 FGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 117
Query: 78 IKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
GA N+Y+ + M + L+ LF +G ++ +++ D G
Sbjct: 118 ELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKG 168
Score = 100 (40.3 bits), Expect = 0.00024, P = 0.00024
Identities = 21/76 (27%), Positives = 44/76 (57%)
Query: 49 AEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLPKHMSQQELESLFSPYGR 106
AE+A++T+N ++ K +++ +++ PS N+++ L K + + L FS +G
Sbjct: 1 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 60
Query: 107 IITSRILCDNLATENG 122
I++ +++CD ENG
Sbjct: 61 ILSCKVVCD----ENG 72
Score = 96 (38.9 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
+ +S G+GFV++ R EDA+KA++ +NG L K I V A+ E
Sbjct: 163 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVE 207
Score = 70 (29.7 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 79 KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+G NLYV L + + L FSP+G I +++++ +
Sbjct: 228 QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME 264
>UNIPROTKB|G4NH06 [details] [associations]
symbol:MGG_03973 "Splicing factor 3B subunit 4"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001236 KO:K12831 RefSeq:XP_003719883.1
EnsemblFungi:MGG_03973T0 GeneID:2677428 KEGG:mgr:MGG_03973
Uniprot:G4NH06
Length = 407
Score = 128 (50.1 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 27/75 (36%), Positives = 43/75 (57%)
Query: 37 GYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIK--GANLYVSGLPKHMSQ 94
GYGFV + PE A+ A LNG+R+ K I+V+ A + GA L+V+ L + +
Sbjct: 54 GYGFVEFDTPESADYAARALNGIRVFGKVIRVNKASADKQKTAEIGAELFVNNLDPQVDE 113
Query: 95 QELESLFSPYGRIIT 109
+ L FS +G+++T
Sbjct: 114 KILFDTFSRFGQLVT 128
>WB|WBGene00004723 [details] [associations]
symbol:sap-49 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0042127 "regulation of cell proliferation"
evidence=IMP] [GO:0040020 "regulation of meiosis" evidence=IMP]
[GO:0040022 "feminization of hermaphroditic germ-line"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0005681
GO:GO:0003723 GO:GO:0042127 GO:GO:0040035 GO:GO:0007281 EMBL:Z46676
GO:GO:0040020 NextBio:883379 GO:GO:0040022 eggNOG:COG0724
GeneTree:ENSGT00690000101901 PIR:T19069 RefSeq:NP_001021932.1
ProteinModelPortal:Q09442 SMR:Q09442 IntAct:Q09442 STRING:Q09442
PaxDb:Q09442 EnsemblMetazoa:C08B11.5.1 EnsemblMetazoa:C08B11.5.2
GeneID:4363023 KEGG:cel:CELE_C08B11.5 UCSC:C08B11.5.1 CTD:4363023
WormBase:C08B11.5 InParanoid:Q09442 OMA:VSETLLW ArrayExpress:Q09442
Uniprot:Q09442
Length = 388
Score = 127 (49.8 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 33/94 (35%), Positives = 52/94 (55%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIK-GANLYVSGLPK 90
TA G+GFV + EDA+ AI LN ++L K IKV+ A +++ GAN++V L
Sbjct: 50 TANHQGFGFVEFMGEEDADYAIKILNMIKLYGKPIKVNKASAHEKNMDVGANIFVGNLDP 109
Query: 91 HMSQQELESLFSPYGRII-TSRILCD-NLATENG 122
+ ++ L FS +G I+ +I+ D + T G
Sbjct: 110 EVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKG 143
>UNIPROTKB|Q09442 [details] [associations]
symbol:sap-49 "Splicing factor 3B subunit 4" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0040011
GO:GO:0005681 GO:GO:0003723 GO:GO:0042127 GO:GO:0040035
GO:GO:0007281 EMBL:Z46676 GO:GO:0040020 NextBio:883379
GO:GO:0040022 eggNOG:COG0724 GeneTree:ENSGT00690000101901
PIR:T19069 RefSeq:NP_001021932.1 ProteinModelPortal:Q09442
SMR:Q09442 IntAct:Q09442 STRING:Q09442 PaxDb:Q09442
EnsemblMetazoa:C08B11.5.1 EnsemblMetazoa:C08B11.5.2 GeneID:4363023
KEGG:cel:CELE_C08B11.5 UCSC:C08B11.5.1 CTD:4363023
WormBase:C08B11.5 InParanoid:Q09442 OMA:VSETLLW ArrayExpress:Q09442
Uniprot:Q09442
Length = 388
Score = 127 (49.8 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 33/94 (35%), Positives = 52/94 (55%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIK-GANLYVSGLPK 90
TA G+GFV + EDA+ AI LN ++L K IKV+ A +++ GAN++V L
Sbjct: 50 TANHQGFGFVEFMGEEDADYAIKILNMIKLYGKPIKVNKASAHEKNMDVGANIFVGNLDP 109
Query: 91 HMSQQELESLFSPYGRII-TSRILCD-NLATENG 122
+ ++ L FS +G I+ +I+ D + T G
Sbjct: 110 EVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKG 143
>TAIR|locus:2199700 [details] [associations]
symbol:PAB3 "poly(A) binding protein 3" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006397
"mRNA processing" evidence=IGI] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AC003979 EMBL:Y12227
EMBL:AF293840 EMBL:AY054490 IPI:IPI00543342 PIR:T00768
RefSeq:NP_173690.1 UniGene:At.208 ProteinModelPortal:O64380
SMR:O64380 PaxDb:O64380 PRIDE:O64380 EnsemblPlants:AT1G22760.1
GeneID:838882 KEGG:ath:AT1G22760 TAIR:At1g22760 InParanoid:O64380
OMA:SSISHQK PhylomeDB:O64380 ProtClustDB:CLSN2679283
Genevestigator:O64380 GermOnline:AT1G22760 Uniprot:O64380
Length = 660
Score = 129 (50.5 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 30/90 (33%), Positives = 50/90 (55%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY-----ARPSSESI---KGANL 83
T +S GYGFV + + E A+ AI+ LNG+ + +K + V + R E+ + N+
Sbjct: 172 TGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNV 231
Query: 84 YVSGLPKHMSQQELESLFSPYGRIITSRIL 113
YV LPK + + EL F +G +I+S ++
Sbjct: 232 YVKNLPKEIGEDELRKTFGKFG-VISSAVV 260
Score = 117 (46.2 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 25/91 (27%), Positives = 47/91 (51%)
Query: 34 QSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYA-RPSSESIKG-ANLYVSGLPKH 91
+SLGY ++N+ P DA +A+ LN L ++ I++ + R S + G N+++ L
Sbjct: 87 RSLGYAYINFSNPNDAYRAMEALNYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDAS 146
Query: 92 MSQQELESLFSPYGRIITSRILCDNLATENG 122
+ + L FS +G I++ ++ D G
Sbjct: 147 IDNKALFETFSSFGTILSCKVAMDVTGRSKG 177
Score = 81 (33.6 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 14/47 (29%), Positives = 27/47 (57%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
E +GANLY+ L + ++L+ +FS YG + +S+++ + G
Sbjct: 327 EKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRG 373
Score = 68 (29.0 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 38 YGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
+GFVN+ E A A+ +NG+ L + + V A+ SE
Sbjct: 271 FGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSE 309
>UNIPROTKB|D4A288 [details] [associations]
symbol:D4A288 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG469QV2
IPI:IPI00358787 ProteinModelPortal:D4A288
Ensembl:ENSRNOT00000039637 Uniprot:D4A288
Length = 291
Score = 123 (48.4 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 31/103 (30%), Positives = 49/103 (47%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A KA+ L +Q + K P ANLY+S LP
Sbjct: 61 TTNKCKGYGFVDFDSPSSAHKAVTALKASGMQAQMAKQQEQDP-------ANLYISNLPL 113
Query: 91 HMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
M +Q + P+G++I + IL D G ++ + E+
Sbjct: 114 SMDEQ---GMLKPFGQVIATGILRDTTGARRGVGFARMESTEK 153
>WB|WBGene00015943 [details] [associations]
symbol:tiar-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0009792
GO:GO:0002009 GO:GO:0040007 GO:GO:0002119 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011 GO:GO:0000003
GO:GO:0003676 EMBL:FO080599 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
GeneID:173967 KEGG:cel:CELE_C18A3.5 UCSC:C18A3.5f.1 CTD:173967
NextBio:881893 RefSeq:NP_495121.1 ProteinModelPortal:Q95QV8
SMR:Q95QV8 IntAct:Q95QV8 STRING:Q95QV8 PRIDE:Q95QV8
EnsemblMetazoa:C18A3.5a WormBase:C18A3.5a InParanoid:Q95QV8
OMA:WAVEPGQ ArrayExpress:Q95QV8 Uniprot:Q95QV8
Length = 408
Score = 104 (41.7 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 22/51 (43%), Positives = 36/51 (70%)
Query: 21 SDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYA 71
SDA++ + +T +S GYGFV+Y + E+AE+AI +NG L +TI+ ++A
Sbjct: 162 SDAKV-IRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWA 211
Score = 42 (19.8 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 9/31 (29%), Positives = 18/31 (58%)
Query: 82 NLYVSGLPKHMSQQELESLFSPYGRIITSRI 112
++YV + +++ E+ F+ +GRI RI
Sbjct: 242 SVYVGNIAS-LTEDEIRQGFASFGRITEVRI 271
>ASPGD|ASPL0000078272 [details] [associations]
symbol:AN4330 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:BN001303 eggNOG:COG0724 HOGENOM:HOG000187841 KO:K14573
OrthoDB:EOG4K6KCP EMBL:AACD01000075 OMA:MHALECL RefSeq:XP_661934.1
ProteinModelPortal:Q5B550 STRING:Q5B550
EnsemblFungi:CADANIAT00006131 GeneID:2872127 KEGG:ani:AN4330.2
Uniprot:Q5B550
Length = 724
Score = 108 (43.1 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 22/42 (52%), Positives = 27/42 (64%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARP 73
T QS GYGFV + EDA+ A+ LNG + K IKV YA+P
Sbjct: 74 TKQSKGYGFVTFADVEDAKAALEELNGSTFEGKKIKVEYAQP 115
Score = 44 (20.5 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 16/51 (31%), Positives = 19/51 (37%)
Query: 81 ANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGR 131
A V G PK E G II +L + A G+Y L GR
Sbjct: 363 AQACVQGAPKQQDPLAAEKEKGKKGTIIKQSVLQNENADPTGRYT--LDGR 411
Score = 40 (19.1 bits), Expect = 7.1e-07, Sum P(2) = 7.1e-07
Identities = 8/35 (22%), Positives = 18/35 (51%)
Query: 81 ANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+ +++ LP + L F+ +G + +RI+ D
Sbjct: 309 STIFIRNLPFTCDDESLYDHFTQFGPLRYARIVVD 343
Score = 37 (18.1 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 5/18 (27%), Positives = 13/18 (72%)
Query: 83 LYVSGLPKHMSQQELESL 100
L + +P+H++ ++L+ L
Sbjct: 495 LSIRNIPRHVTSKDLKQL 512
>ASPGD|ASPL0000061196 [details] [associations]
symbol:AN10164 species:162425 "Emericella nidulans"
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:C8VTL0 EnsemblFungi:CADANIAT00001543 OMA:QNTNPIP
Uniprot:C8VTL0
Length = 477
Score = 126 (49.4 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 32/106 (30%), Positives = 57/106 (53%)
Query: 33 AQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKG--AN---LYVSG 87
++ YGFV + P AE+A+ TLNG R+ I+V++A S+ + K +N ++V
Sbjct: 129 SKGANYGFVEFDDPGAAERAMQTLNGRRIHQSEIRVNWAYQSNTANKEDTSNHFHIFVGD 188
Query: 88 LPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
L ++ + L FS +G + +R++ D + T + Y + RER
Sbjct: 189 LSNEVNDEVLLQAFSAFGSVSEARVMWD-MKTGRSRGYGFVAFRER 233
Score = 86 (35.3 bits), Expect = 0.00069, Sum P(2) = 0.00069
Identities = 18/56 (32%), Positives = 35/56 (62%)
Query: 21 SDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
S+A + ++ + T +S GYGFV + DAEKA+ +++G L ++ I+ ++A +
Sbjct: 209 SEARV-MWDMKTGRSRGYGFVAFRERADAEKALTSMDGEWLGSRAIRCNWANQKGQ 263
Score = 53 (23.7 bits), Expect = 0.00069, Sum P(2) = 0.00069
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 84 YVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
YV L + +Q ++ LF +G +I +R+ D
Sbjct: 311 YVGNLTPYTTQNDIVPLFQNFGYVIETRMQAD 342
>GENEDB_PFALCIPARUM|PF14_0194 [details] [associations]
symbol:PF14_0194 "spliceosome-associated
protein, putative" species:5833 "Plasmodium falciparum" [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0008380 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003676 EMBL:AE014187
HSSP:P11940 KO:K12831 RefSeq:XP_001348367.1
ProteinModelPortal:Q8ILQ0 IntAct:Q8ILQ0 MINT:MINT-1577513
EnsemblProtists:PF14_0194:mRNA GeneID:811775 KEGG:pfa:PF14_0194
EuPathDB:PlasmoDB:PF3D7_1420000 ProtClustDB:CLSZ2501032
Uniprot:Q8ILQ0
Length = 484
Score = 126 (49.4 bits), Expect = 3.1e-07, P = 3.1e-07
Identities = 28/87 (32%), Positives = 46/87 (52%)
Query: 37 GYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIK-GANLYVSGLPKHMSQQ 95
GYGFV Y + E A N LN +L K ++ + A S GANL++ L + ++
Sbjct: 62 GYGFVEYEYEYECEYAANILNMTKLFGKALRCNKATQDKRSFDVGANLFIGNLDDEVDEK 121
Query: 96 ELESLFSPYGRIITSRILCDNLATENG 122
L +FS +G+I+T +++ + T G
Sbjct: 122 MLFDIFSSFGQIMTVKVMRNEDDTSKG 148
>UNIPROTKB|Q8ILQ0 [details] [associations]
symbol:PF14_0194 "Spliceosome-associated protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0005681 "spliceosomal
complex" evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0008380 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003676 EMBL:AE014187 HSSP:P11940 KO:K12831
RefSeq:XP_001348367.1 ProteinModelPortal:Q8ILQ0 IntAct:Q8ILQ0
MINT:MINT-1577513 EnsemblProtists:PF14_0194:mRNA GeneID:811775
KEGG:pfa:PF14_0194 EuPathDB:PlasmoDB:PF3D7_1420000
ProtClustDB:CLSZ2501032 Uniprot:Q8ILQ0
Length = 484
Score = 126 (49.4 bits), Expect = 3.1e-07, P = 3.1e-07
Identities = 28/87 (32%), Positives = 46/87 (52%)
Query: 37 GYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIK-GANLYVSGLPKHMSQQ 95
GYGFV Y + E A N LN +L K ++ + A S GANL++ L + ++
Sbjct: 62 GYGFVEYEYEYECEYAANILNMTKLFGKALRCNKATQDKRSFDVGANLFIGNLDDEVDEK 121
Query: 96 ELESLFSPYGRIITSRILCDNLATENG 122
L +FS +G+I+T +++ + T G
Sbjct: 122 MLFDIFSSFGQIMTVKVMRNEDDTSKG 148
>TAIR|locus:2157702 [details] [associations]
symbol:CP31B "chloroplast RNA-binding protein 31B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0009451 "RNA modification"
evidence=IMP] [GO:0000023 "maltose metabolic process" evidence=RCA]
[GO:0006098 "pentose-phosphate shunt" evidence=RCA] [GO:0009409
"response to cold" evidence=RCA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0019252 "starch
biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=RCA] [GO:0019684 "photosynthesis, light reaction"
evidence=RCA] [GO:0042742 "defense response to bacterium"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AB024031
eggNOG:COG0724 GO:GO:0009451 HOGENOM:HOG000276232 HSSP:P11940
ProtClustDB:CLSN2915857 UniGene:At.46085 UniGene:At.7917
EMBL:AY039868 EMBL:AY077660 IPI:IPI00537317 RefSeq:NP_199836.1
ProteinModelPortal:Q9FGS0 SMR:Q9FGS0 STRING:Q9FGS0 PaxDb:Q9FGS0
PRIDE:Q9FGS0 EnsemblPlants:AT5G50250.1 GeneID:835090
KEGG:ath:AT5G50250 TAIR:At5g50250 InParanoid:Q9FGS0 OMA:AAFRIYV
PhylomeDB:Q9FGS0 Genevestigator:Q9FGS0 Uniprot:Q9FGS0
Length = 289
Score = 122 (48.0 bits), Expect = 3.2e-07, P = 3.2e-07
Identities = 30/92 (32%), Positives = 48/92 (52%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYA-----RPSSES-IKGA--NL 83
T QS G+GFV E+AEKA+ N + + + V+ A RP + + A +
Sbjct: 150 TDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRAAPRGSRPERQPRVYDAAFRI 209
Query: 84 YVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
YV LP + LE LFS +G+++ +R++ D
Sbjct: 210 YVGNLPWDVDSGRLERLFSEHGKVVDARVVSD 241
>SGD|S000001919 [details] [associations]
symbol:PES4 "Poly(A) binding protein, suppressor of DNA
polymerase epsilon mutation" species:4932 "Saccharomyces
cerevisiae" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SGD:S000001919
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:D50617
EMBL:BK006940 GO:GO:0003723 eggNOG:NOG271400
GeneTree:ENSGT00550000075863 HOGENOM:HOG000000869 OrthoDB:EOG45HW68
EMBL:D26442 PIR:S56278 RefSeq:NP_116678.1 ProteinModelPortal:P39684
SMR:P39684 STRING:P39684 EnsemblFungi:YFR023W GeneID:850579
KEGG:sce:YFR023W CYGD:YFR023w OMA:DDCGRSK NextBio:966406
Genevestigator:P39684 GermOnline:YFR023W Uniprot:P39684
Length = 611
Score = 127 (49.8 bits), Expect = 3.4e-07, P = 3.4e-07
Identities = 30/103 (29%), Positives = 60/103 (58%)
Query: 15 KVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPS 74
K + F A++C+ + T +SLG+G++N+ E+AEKA+ LN ++ K I++ + +
Sbjct: 112 KKYPSFVSAKVCLDSV-TKKSLGHGYLNFEDKEEAEKAMEELNYTKVNGKEIRIMPSLRN 170
Query: 75 SESIK--GANLYVSGLPKH---MSQQELESLFSPYGRIITSRI 112
+ K G N++ S LP + ++ + FS YG+I++ ++
Sbjct: 171 TTFRKNFGTNVFFSNLPLNNPLLTTRVFYDTFSRYGKILSCKL 213
>UNIPROTKB|H0YBN4 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000523555
Uniprot:H0YBN4
Length = 175
Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 27/89 (30%), Positives = 48/89 (53%)
Query: 35 SLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSESIKGA------NLYVS 86
S GYGFV++ E AE+AI +NG+ L ++ + V +R E+ GA N+Y+
Sbjct: 84 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIK 143
Query: 87 GLPKHMSQQELESLFSPYGRIITSRILCD 115
+ M + L+ LF +G ++ +++ D
Sbjct: 144 NFGEDMDDERLKDLFGKFGPALSVKVMTD 172
>SGD|S000000967 [details] [associations]
symbol:PAB1 "Poly(A) binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0008143 "poly(A) RNA binding"
evidence=IDA;IMP] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0005840 "ribosome" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0006446 "regulation of translational
initiation" evidence=IMP;IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
SGD:S000000967 GO:GO:0005634 GO:GO:0000166 GO:GO:0006446
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005840 EMBL:BK006939
GO:GO:0051028 EMBL:U18922 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 GO:GO:0060211
GeneTree:ENSGT00640000091232 OrthoDB:EOG4QJVWJ EMBL:M12780
EMBL:M13371 EMBL:D00023 EMBL:AY692854 PIR:A25221 RefSeq:NP_011092.1
PDB:1IFW PDBsum:1IFW ProteinModelPortal:P04147 SMR:P04147
DIP:DIP-2275N IntAct:P04147 MINT:MINT-693056 STRING:P04147
PaxDb:P04147 PeptideAtlas:P04147 EnsemblFungi:YER165W GeneID:856912
KEGG:sce:YER165W OMA:ITEKNQQ EvolutionaryTrace:P04147
NextBio:983356 Genevestigator:P04147 GermOnline:YER165W
Uniprot:P04147
Length = 577
Score = 123 (48.4 bits), Expect = 8.4e-07, P = 8.4e-07
Identities = 34/111 (30%), Positives = 55/111 (49%)
Query: 21 SDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESI 78
S +C I T SLGY +VN++ E KAI LN ++ + ++ +++ PS
Sbjct: 65 SSIRVCRDAI-TKTSLGYAYVNFNDHEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLRKK 123
Query: 79 KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLG 129
N+++ L + + L FS +G I++S+I D ENGK G G
Sbjct: 124 GSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATD----ENGKS-KGFG 169
Score = 100 (40.3 bits), Expect = 0.00025, P = 0.00025
Identities = 26/87 (29%), Positives = 47/87 (54%)
Query: 34 QSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVS-----YARPSS-ESIKG--ANLYV 85
+S G+GFV++ A++AI+ LNG+ L + I V+ R S E K NLYV
Sbjct: 164 KSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYV 223
Query: 86 SGLPKHMSQQELESLFSPYGRIITSRI 112
+ + ++ + LF+ +G I+++ +
Sbjct: 224 KNINSETTDEQFQELFAKFGPIVSASL 250
Score = 86 (35.3 bits), Expect = 4.7e-07, Sum P(2) = 4.7e-07
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 37 GYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
G+GFVNY + EDA KA+ LN L + + V A+ +E
Sbjct: 260 GFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNE 299
Score = 86 (35.3 bits), Expect = 4.7e-07, Sum P(2) = 4.7e-07
Identities = 20/61 (32%), Positives = 32/61 (52%)
Query: 69 SYARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGL 128
+Y +G NL+V L + ++LE F+PYG I +++++ TENGK G
Sbjct: 310 AYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVM----RTENGKS-KGF 364
Query: 129 G 129
G
Sbjct: 365 G 365
>TAIR|locus:504955752 [details] [associations]
symbol:AT3G13224 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441 HSSP:Q14103
KO:K12741 OMA:HAINGHH EMBL:AP002042 EMBL:AY080630 EMBL:AY123003
EMBL:AK221448 IPI:IPI00534312 RefSeq:NP_683559.2 UniGene:At.27259
ProteinModelPortal:Q9LHL2 SMR:Q9LHL2 IntAct:Q9LHL2 PRIDE:Q9LHL2
EnsemblPlants:AT3G13224.2 GeneID:820515 KEGG:ath:AT3G13224
TAIR:At3g13224 InParanoid:Q9LHL2 PhylomeDB:Q9LHL2
ProtClustDB:CLSN2918087 Genevestigator:Q9LHL2 Uniprot:Q9LHL2
Length = 358
Score = 122 (48.0 bits), Expect = 5.0e-07, P = 5.0e-07
Identities = 25/89 (28%), Positives = 49/89 (55%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAI---NTLNGLRLQNK-TIKVSYARPSSESIKGANLYVSG 87
T Q G+GF+ + P +K I + +NG +++ K TI S+ IK ++V G
Sbjct: 56 TGQPRGFGFITFADPSVVDKVIEDTHVINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGG 115
Query: 88 LPKHMSQQELESLFSPYGRIITSRILCDN 116
+P +++ EL+ F+ YG ++ +++ D+
Sbjct: 116 IPSTVTEDELKDFFAKYGNVVEHQVIRDH 144
>FB|FBgn0015818 [details] [associations]
symbol:Spx "Spliceosomal protein on the X" species:7227
"Drosophila melanogaster" [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS;NAS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0005686 "U2 snRNP" evidence=ISS] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0007052 "mitotic spindle organization"
evidence=IMP] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0007052 GO:GO:0022008 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0071011 GO:GO:0000398 GO:GO:0005686
eggNOG:COG0724 HSSP:P11940 EMBL:X97197 ProteinModelPortal:Q24534
SMR:Q24534 IntAct:Q24534 STRING:Q24534 PRIDE:Q24534
FlyBase:FBgn0015818 InParanoid:Q24534 OrthoDB:EOG41894B
ArrayExpress:Q24534 Bgee:Q24534 Uniprot:Q24534
Length = 366
Score = 122 (48.0 bits), Expect = 5.2e-07, P = 5.2e-07
Identities = 31/94 (32%), Positives = 51/94 (54%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIK-GANLYVSGLPK 90
T GYGFV + EDA+ I +N ++L K I+V+ A +++ GAN+++ L
Sbjct: 69 TQMHQGYGFVEFLSEEDADYGIKIMNMIKLYGKPIRVNKASAHQKNLDVGANIFIGNLDV 128
Query: 91 HMSQQELESLFSPYGRII-TSRILCDNLATENGK 123
+ ++ L FS +G I+ T +I+ D E GK
Sbjct: 129 EVDEKLLYDTFSAFGVILQTPKIMRD---PETGK 159
>UNIPROTKB|H0YCC8 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000474378 Uniprot:H0YCC8
Length = 197
Score = 115 (45.5 bits), Expect = 5.9e-07, P = 5.9e-07
Identities = 31/103 (30%), Positives = 54/103 (52%)
Query: 35 SLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSESIKGA------NLYVS 86
S GY FV++ E A+KAI +NG+ L ++ + V +R E+ GA N+Y+
Sbjct: 50 SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIK 109
Query: 87 GLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLG 129
+ + + L+ LFS +G+ ++ +++ D NGK G G
Sbjct: 110 NFGEEVDDESLKELFSQFGKTLSVKVMRD----PNGKS-KGFG 147
>UNIPROTKB|E5RH24 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00979703
ProteinModelPortal:E5RH24 SMR:E5RH24 Ensembl:ENST00000520142
ArrayExpress:E5RH24 Bgee:E5RH24 Uniprot:E5RH24
Length = 118
Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 23/75 (30%), Positives = 46/75 (61%)
Query: 25 ICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGAN 82
+C +I T +SLGY +VN+ +P DAE+A++T+N ++ K +++ +++ PS N
Sbjct: 42 VCRDMI-TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGN 100
Query: 83 LYVSGLPKHMSQQEL 97
+++ L K + + L
Sbjct: 101 IFIKNLDKSIDNKAL 115
>UNIPROTKB|Q96B58 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein, isoform CRA_d" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CH471053
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
HSSP:P11940 EMBL:AC016700 UniGene:Hs.413123 HGNC:HGNC:11802
ChiTaRS:TIA1 EMBL:BC015944 IPI:IPI00743479 SMR:Q96B58 STRING:Q96B58
Ensembl:ENST00000416149 UCSC:uc002sgm.3 Uniprot:Q96B58
Length = 214
Score = 116 (45.9 bits), Expect = 6.3e-07, P = 6.3e-07
Identities = 32/115 (27%), Positives = 62/115 (53%)
Query: 26 CVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR-PSSE-------- 76
C ++ TA + Y FV +H A A+ +NG ++ K +KV++A PSS+
Sbjct: 36 CKMIMDTAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSST 95
Query: 77 --SIKGA----NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYY 125
S + + +++V L ++ +++++ F+P+GRI +R++ D +AT K Y
Sbjct: 96 VVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKD-MATGKSKGY 149
>UNIPROTKB|D4AC21 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00365233
ProteinModelPortal:D4AC21 Ensembl:ENSRNOT00000021032
ArrayExpress:D4AC21 Uniprot:D4AC21
Length = 588
Score = 112 (44.5 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 28/104 (26%), Positives = 51/104 (49%)
Query: 20 FSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSES 77
F + C + S GY FV++ E A KAI +NG+ L ++ + V +R E+
Sbjct: 51 FGNILSCKVVCDENGSKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREA 110
Query: 78 IKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
GA N+Y+ + + + L LFS +G+ ++ +++ D
Sbjct: 111 ELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRD 154
Score = 93 (37.8 bits), Expect = 7.4e-07, Sum P(2) = 7.4e-07
Identities = 18/45 (40%), Positives = 28/45 (62%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
+ +S G+GFV+Y + EDA KA+ +NG + K+I V A+ E
Sbjct: 156 SGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVE 200
Score = 71 (30.1 bits), Expect = 7.4e-07, Sum P(2) = 7.4e-07
Identities = 11/38 (28%), Positives = 24/38 (63%)
Query: 79 KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
+G NLY+ L + ++L FSP+G I +++++ ++
Sbjct: 221 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED 258
>TAIR|locus:2058203 [details] [associations]
symbol:FPA species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0009911 "positive regulation of flower
development" evidence=IMP] [GO:0010228 "vegetative to reproductive
phase transition of meristem" evidence=IMP] [GO:0000785 "chromatin"
evidence=IDA] [GO:0009553 "embryo sac development" evidence=IGI]
[GO:0009790 "embryo development" evidence=IGI] [GO:0031048
"chromatin silencing by small RNA" evidence=IMP] [GO:0006378 "mRNA
polyadenylation" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0030154 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0000785
GO:GO:0006351 GO:GO:0003723 GO:GO:0009790 GO:GO:0009911
GO:GO:0031048 GO:GO:0010228 GO:GO:0009908 GO:GO:0009553
EMBL:AC002335 InterPro:IPR012921 Pfam:PF07744 HSSP:Q9V535
EMBL:AY849993 EMBL:AY094463 EMBL:BT003029 EMBL:AK317032
EMBL:AK318833 IPI:IPI00545884 IPI:IPI00852356 IPI:IPI00955350
RefSeq:NP_001078046.1 RefSeq:NP_001078047.1 RefSeq:NP_001078048.1
RefSeq:NP_181869.2 UniGene:At.12188 UniGene:At.36898
ProteinModelPortal:Q8LPQ9 SMR:Q8LPQ9 IntAct:Q8LPQ9 STRING:Q8LPQ9
PaxDb:Q8LPQ9 PRIDE:Q8LPQ9 EnsemblPlants:AT2G43410.2
EnsemblPlants:AT2G43410.3 EnsemblPlants:AT2G43410.4 GeneID:818942
KEGG:ath:AT2G43410 TAIR:At2g43410 eggNOG:NOG250829
HOGENOM:HOG000015139 InParanoid:A8MQX1 OMA:TSAYIDF PhylomeDB:Q8LPQ9
ProtClustDB:CLSN2697851 Genevestigator:Q8LPQ9 PROSITE:PS50917
Uniprot:Q8LPQ9
Length = 901
Score = 125 (49.1 bits), Expect = 9.2e-07, P = 9.2e-07
Identities = 29/84 (34%), Positives = 44/84 (52%)
Query: 30 ISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLP 89
I+ S G+ F+ Y E+A A L G L IK+ YARP+ +L+V G+
Sbjct: 47 ITVYSSRGFAFIYYRHVEEAVAAKEALQGANLNGSQIKIEYARPAKPC---KSLWVGGIG 103
Query: 90 KHMSQQELESLFSPYGRIITSRIL 113
++S+ +LE FS +G+I R L
Sbjct: 104 PNVSKDDLEEEFSKFGKIEDFRFL 127
>UNIPROTKB|G4N7J4 [details] [associations]
symbol:MGG_06400 "Nuclear and cytoplasmic polyadenylated
RNA-binding protein pub1" species:242507 "Magnaporthe oryzae 70-15"
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CM001234
KO:K13201 RefSeq:XP_003717170.1 ProteinModelPortal:G4N7J4
EnsemblFungi:MGG_06400T0 GeneID:2684555 KEGG:mgr:MGG_06400
Uniprot:G4N7J4
Length = 479
Score = 121 (47.7 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 30/107 (28%), Positives = 55/107 (51%)
Query: 33 AQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGAN------LYVS 86
A+ YGFV Y P A++A+ TLNG R+ I+V++A ++ S + ++V
Sbjct: 122 AKGYNYGFVEYDDPGAADRAMQTLNGRRVHQSEIRVNWAYQAATSATKEDTSNHFHIFVG 181
Query: 87 GLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
L ++ + L FS +G + +R++ D + T + Y + R+R
Sbjct: 182 DLSNEVNDEVLTQAFSVFGSVSEARVMWD-MKTGRSRGYGFVAFRDR 227
>UNIPROTKB|E7ETC0 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC012468 HGNC:HGNC:11804
ChiTaRS:TIAL1 IPI:IPI01012546 ProteinModelPortal:E7ETC0 SMR:E7ETC0
Ensembl:ENST00000497671 ArrayExpress:E7ETC0 Bgee:E7ETC0
Uniprot:E7ETC0
Length = 135
Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 24/86 (27%), Positives = 48/86 (55%)
Query: 26 CVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR-PSSESIKGAN-- 82
C + + Y FV ++ DA A+ +NG ++ K +KV++A PSS+ +N
Sbjct: 38 CKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHF 97
Query: 83 -LYVSGLPKHMSQQELESLFSPYGRI 107
++V L ++ ++++S F+P+G+I
Sbjct: 98 HVFVGDLSPEITTEDIKSAFAPFGKI 123
>UNIPROTKB|A6NKZ9 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOGENOM:HOG000206748 EMBL:AC012468 HGNC:HGNC:11804
ChiTaRS:TIAL1 IPI:IPI00646522 ProteinModelPortal:A6NKZ9 SMR:A6NKZ9
STRING:A6NKZ9 Ensembl:ENST00000369086 ArrayExpress:A6NKZ9
Bgee:A6NKZ9 Uniprot:A6NKZ9
Length = 85
Score = 110 (43.8 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 23/74 (31%), Positives = 45/74 (60%)
Query: 38 YGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR-PSSESIKGAN---LYVSGLPKHMS 93
Y FV ++ DA A+ +NG ++ K +KV++A PSS+ +N ++V L ++
Sbjct: 11 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEIT 70
Query: 94 QQELESLFSPYGRI 107
++++S F+P+G+I
Sbjct: 71 TEDIKSAFAPFGKI 84
>DICTYBASE|DDB_G0267714 [details] [associations]
symbol:sf3b4 "splicing factor 3B subunit 4"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA;ISS]
[GO:0005681 "spliceosomal complex" evidence=IEA;ISS] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0267714 GenomeReviews:CM000150_GR GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 EMBL:AAFI02000003
GO:GO:0005681 GO:GO:0003723 HSSP:Q15427 eggNOG:NOG282907 KO:K12831
RefSeq:XP_647248.1 ProteinModelPortal:Q55GD6 SMR:Q55GD6
STRING:Q55GD6 EnsemblProtists:DDB0233172 GeneID:8616053
KEGG:ddi:DDB_G0267714 OMA:ERNHEAC Uniprot:Q55GD6
Length = 359
Score = 117 (46.2 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 29/92 (31%), Positives = 44/92 (47%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKH 91
T Q G +V + DAE A+ + +RL NK IK+ I GANL++ L
Sbjct: 50 TQQHSGRAYVEFQSSSDAEYALKVMKFVRLFNKEIKIKKENKDKVDI-GANLFIGNLDAD 108
Query: 92 MSQQELESLFSPYGRII-TSRILCDNLATENG 122
+ ++ L FS +G II T +++ D G
Sbjct: 109 VDERILHDTFSRFGTIIFTPKVMRDENGVSKG 140
>TAIR|locus:2040625 [details] [associations]
symbol:PAB7 "poly(A) binding protein 7" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC006282 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 IPI:IPI00535861 PIR:B84783 RefSeq:NP_181204.1
UniGene:At.37531 UniGene:At.50119 ProteinModelPortal:Q9ZQA8
SMR:Q9ZQA8 PaxDb:Q9ZQA8 PRIDE:Q9ZQA8 EnsemblPlants:AT2G36660.1
GeneID:818238 KEGG:ath:AT2G36660 TAIR:At2g36660 InParanoid:Q9ZQA8
OMA:RSLCYGY PhylomeDB:Q9ZQA8 ProtClustDB:CLSN2913328
Genevestigator:Q9ZQA8 GermOnline:AT2G36660 Uniprot:Q9ZQA8
Length = 609
Score = 115 (45.5 bits), Expect = 6.5e-06, P = 6.5e-06
Identities = 34/122 (27%), Positives = 54/122 (44%)
Query: 20 FSDAEIC-VFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESI 78
F + C V + +S GYGFV + + + A AI TLN + +K I V ++ +
Sbjct: 135 FGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKKTDRV 194
Query: 79 KG----ANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERL 134
K NLY+ L +S+ L F+ +G+I++ I D G + E
Sbjct: 195 KPEEKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDA 254
Query: 135 RR 136
RR
Sbjct: 255 RR 256
Score = 113 (44.8 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 28/95 (29%), Positives = 48/95 (50%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYA--RPSSESIKGANLYVSGL 88
S+ +SL YG+ N+ +DA AI N L K I+V ++ P + N++V L
Sbjct: 60 SSGRSLCYGYANFLSRQDANLAIEKKNNSLLNGKMIRVMWSVRAPDARRNGVGNVFVKNL 119
Query: 89 PKHMSQQELESLFSPYGRIITSRILCDNLATENGK 123
P+ ++ L+ +F +G I++ C E+GK
Sbjct: 120 PESVTNAVLQDMFKKFGNIVS----CKVATLEDGK 150
Score = 92 (37.4 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 37 GYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
GY FVN+ PEDA +A T+NG + +K + V A+ +E
Sbjct: 242 GYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKKAE 281
Score = 70 (29.7 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 79 KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
K +N+YV + ++++EL FS G I +++++CD G
Sbjct: 302 KVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKG 345
>TAIR|locus:2115169 [details] [associations]
symbol:AT4G36960 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 KO:K14411
HSSP:Q14103 UniGene:At.4642 UniGene:At.4643 EMBL:AY048286
EMBL:BT000573 IPI:IPI00527793 RefSeq:NP_001154290.1
RefSeq:NP_568011.1 ProteinModelPortal:Q94AC3 SMR:Q94AC3
IntAct:Q94AC3 PaxDb:Q94AC3 PRIDE:Q94AC3 EnsemblPlants:AT4G36960.1
EnsemblPlants:AT4G36960.2 GeneID:829850 KEGG:ath:AT4G36960
TAIR:At4g36960 HOGENOM:HOG000070627 InParanoid:Q94AC3 OMA:EITDLYM
PhylomeDB:Q94AC3 ProtClustDB:CLSN2689792 Genevestigator:Q94AC3
Uniprot:Q94AC3
Length = 379
Score = 117 (46.2 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 36/117 (30%), Positives = 57/117 (48%)
Query: 20 FSDAEICVFLI--STAQSLGYGFVNYHRPEDAEKAINTLNGLR-LQNKTIKVSYARPSSE 76
F D E C+ + ST +S G+G+V + EDA+ N L G L N+ ++V A P E
Sbjct: 26 FGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAK---NALKGEHFLGNRILEVKVATPKEE 82
Query: 77 ----SIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLG 129
+ K ++V+ +P +S+ + S F YG I + D N K + G+G
Sbjct: 83 MRQPAKKVTRIFVARIPSSVSESDFRSHFERYGEITDLYMPKDY----NSKQHRGIG 135
>ASPGD|ASPL0000007134 [details] [associations]
symbol:AN6256 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACD01000107 EMBL:BN001301
GO:GO:0016853 HOGENOM:HOG000276232 eggNOG:NOG331137
OrthoDB:EOG4TJ03G RefSeq:XP_663860.1 ProteinModelPortal:Q5AZM4
STRING:Q5AZM4 EnsemblFungi:CADANIAT00006735 GeneID:2871037
KEGG:ani:AN6256.2 OMA:TAVWEQE Uniprot:Q5AZM4
Length = 153
Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 33/100 (33%), Positives = 49/100 (49%)
Query: 37 GYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQQE 96
G+G+V + PEDA++AI+ ++G L +TIKV+ A+P K AN GL + E
Sbjct: 54 GFGYVEFDSPEDAKEAIDNMDGSELYGRTIKVAPAKPQ----KDAN---EGLGSKTAIWE 106
Query: 97 LESLFSPYGRIITSRILCDNLATENGKYYSGLGGRERLRR 136
E S Y ++ D LA E K + +RR
Sbjct: 107 QEGYLSKYA--VSEE---DKLAAEESKMEDSGPSEDPIRR 141
>UNIPROTKB|E2R9I1 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR011598
InterPro:IPR012677 Pfam:PF00010 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS50888 PROSITE:PS51309 SMART:SM00353
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:4.10.280.10 SUPFAM:SSF47459
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 EMBL:AAEX03009572
Ensembl:ENSCAFT00000004949 Uniprot:E2R9I1
Length = 700
Score = 116 (45.9 bits), Expect = 6.1e-06, P = 6.1e-06
Identities = 29/111 (26%), Positives = 54/111 (48%)
Query: 20 FSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSES 77
F + C + S GY FV++ E A+KAI +NG+ L ++ + V +R E+
Sbjct: 162 FGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 221
Query: 78 IKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
GA N+Y+ + + + L+ LFS +G+ ++ +++ D G
Sbjct: 222 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKG 272
Score = 101 (40.6 bits), Expect = 0.00025, P = 0.00025
Identities = 24/81 (29%), Positives = 47/81 (58%)
Query: 49 AEKAINTLNGLRLQNKTIKVSYAR--PSSESIKGANLYVSGLPKHMSQQELESLFSPYGR 106
AE+A++T+N ++ K I++ +++ PS N+++ L K + + L FS +G
Sbjct: 105 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 164
Query: 107 IITSRILCDNLATENG-KYYS 126
I++ +++CD ENG K Y+
Sbjct: 165 ILSCKVVCD----ENGSKGYA 181
Score = 92 (37.4 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
+ +S G+GFV+Y + EDA KA+ +NG + K I V A+ E
Sbjct: 267 SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVE 311
Score = 71 (30.1 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 11/38 (28%), Positives = 24/38 (63%)
Query: 79 KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
+G NLY+ L + ++L FSP+G I +++++ ++
Sbjct: 332 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED 369
>UNIPROTKB|F8VV01 [details] [associations]
symbol:RBMS2 "RNA-binding motif,
single-stranded-interacting protein 2" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC090681 HGNC:HGNC:9909
EMBL:AC097104 IPI:IPI01022795 ProteinModelPortal:F8VV01 SMR:F8VV01
Ensembl:ENST00000550726 ArrayExpress:F8VV01 Bgee:F8VV01
Uniprot:F8VV01
Length = 282
Score = 114 (45.2 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 21/52 (40%), Positives = 33/52 (63%)
Query: 82 NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLGGRER 133
NLY+S LP M +QELE + P+G++I++RIL D T G ++ + E+
Sbjct: 11 NLYISNLPLSMDEQELEGMLKPFGQVISTRILRDTSGTSRGVGFARMESTEK 62
>UNIPROTKB|B4DHA8 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG107646
IPI:IPI00853277 UniGene:Hs.435976 UniGene:Hs.600908 HGNC:HGNC:14015
EMBL:AC015961 EMBL:AC090386 EMBL:AC093332 EMBL:AC129908
EMBL:AK295009 ProteinModelPortal:B4DHA8 STRING:B4DHA8
Ensembl:ENST00000588597 UCSC:uc002lai.2 Bgee:B4DHA8 Uniprot:B4DHA8
Length = 454
Score = 95 (38.5 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 18/52 (34%), Positives = 29/52 (55%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSG 127
E +G NL++ LP+ EL +F P+G +I+S++ D AT K + G
Sbjct: 404 EGPEGCNLFIYHLPQEFGDAELMQMFLPFGNVISSKVFVDR-ATNQSKCFGG 454
Score = 59 (25.8 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 19/57 (33%), Positives = 26/57 (45%)
Query: 6 LLNKLFTYEKVHL---GFSDAEICVFLIST-AQSLGYGFVNYHRPEDAEKAINTLNG 58
+LNK + + V F + E C L S G FV Y +A+ AIN L+G
Sbjct: 147 MLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALHG 203
>TAIR|locus:2122009 [details] [associations]
symbol:RBP31 "AT4G24770" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA;TAS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0045087 "innate
immune response" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0009451 "RNA modification" evidence=IMP]
[GO:0009073 "aromatic amino acid family biosynthetic process"
evidence=RCA] [GO:0009965 "leaf morphogenesis" evidence=RCA]
[GO:0016226 "iron-sulfur cluster assembly" evidence=RCA]
[GO:0030154 "cell differentiation" evidence=RCA] [GO:0045036
"protein targeting to chloroplast" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0009631 "cold acclimation" evidence=IMP] [GO:0016553 "base
conversion or substitution editing" evidence=IMP] [GO:0043489 "RNA
stabilization" evidence=IMP] [GO:0006396 "RNA processing"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009570 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0008266 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 GO:GO:0009631
GO:GO:0016553 GO:GO:0006396 GO:GO:0030529 EMBL:AL035356
EMBL:AL161562 GO:GO:0009535 eggNOG:COG0724 HOGENOM:HOG000276232
EMBL:M94554 EMBL:X65255 EMBL:U08467 EMBL:D31712 EMBL:D31713
IPI:IPI00523699 IPI:IPI00542634 IPI:IPI00760320 PIR:S28057
PIR:S53492 RefSeq:NP_194208.1 UniGene:At.38112 UniGene:At.70990
ProteinModelPortal:Q04836 SMR:Q04836 STRING:Q04836 PaxDb:Q04836
PRIDE:Q04836 ProMEX:Q04836 EnsemblPlants:AT4G24770.1 GeneID:828579
KEGG:ath:AT4G24770 GeneFarm:4009 TAIR:At4g24770 InParanoid:Q04836
OMA:NRYDLNG PhylomeDB:Q04836 ProtClustDB:CLSN2915857
Genevestigator:Q04836 GermOnline:AT4G24770 GO:GO:0043489
Uniprot:Q04836
Length = 329
Score = 115 (45.5 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 30/101 (29%), Positives = 50/101 (49%)
Query: 23 AEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGA- 81
AE+ ++ T QS G+GFV ++AE A+ N L + + V+ A P + A
Sbjct: 179 AEV-IYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAP 237
Query: 82 -------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+YV LP + LE LFS +G+++ +R++ D
Sbjct: 238 RVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYD 278
>UNIPROTKB|D4A6U8 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036 GO:GO:0048024
OrthoDB:EOG4B5P59 IPI:IPI00778030 ProteinModelPortal:D4A6U8
Ensembl:ENSRNOT00000041366 Uniprot:D4A6U8
Length = 382
Score = 116 (45.9 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 32/115 (27%), Positives = 62/115 (53%)
Query: 26 CVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR-PSSE-------- 76
C ++ TA + Y FV +H A A+ +NG ++ K +KV++A PSS+
Sbjct: 32 CKMIMDTAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSST 91
Query: 77 --SIKGA----NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYY 125
S + + +++V L ++ +++++ F+P+GRI +R++ D +AT K Y
Sbjct: 92 VVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKD-MATGKSKGY 145
>UNIPROTKB|F8W8I6 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00926358
ProteinModelPortal:F8W8I6 SMR:F8W8I6 PRIDE:F8W8I6
Ensembl:ENST00000282574 ArrayExpress:F8W8I6 Bgee:F8W8I6
Uniprot:F8W8I6
Length = 385
Score = 116 (45.9 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 32/115 (27%), Positives = 62/115 (53%)
Query: 26 CVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR-PSSE-------- 76
C ++ TA + Y FV +H A A+ +NG ++ K +KV++A PSS+
Sbjct: 36 CKMIMDTAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSST 95
Query: 77 --SIKGA----NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYY 125
S + + +++V L ++ +++++ F+P+GRI +R++ D +AT K Y
Sbjct: 96 VVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKD-MATGKSKGY 149
>UNIPROTKB|P31483 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0017091 "AU-rich
element binding" evidence=IEA] [GO:0017148 "negative regulation of
translation" evidence=IEA] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0048024 "regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0006917 "induction of apoptosis" evidence=TAS]
[GO:0008143 "poly(A) RNA binding" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0006915 EMBL:CH471053
GO:GO:0006917 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
GO:GO:0008143 HOGENOM:HOG000206748 KO:K13201 EMBL:M77142
EMBL:S70114 EMBL:AC016700 IPI:IPI00291398 IPI:IPI00333996
PIR:A39293 RefSeq:NP_071320.2 RefSeq:NP_071505.2 UniGene:Hs.413123
PDB:3BS9 PDBsum:3BS9 ProteinModelPortal:P31483 SMR:P31483
IntAct:P31483 STRING:P31483 PhosphoSite:P31483 DMDM:206729905
PaxDb:P31483 PRIDE:P31483 Ensembl:ENST00000415783
Ensembl:ENST00000433529 GeneID:7072 KEGG:hsa:7072 UCSC:uc002sgj.4
UCSC:uc002sgk.4 CTD:7072 GeneCards:GC02M070437 HGNC:HGNC:11802
MIM:603518 neXtProt:NX_P31483 PharmGKB:PA36511 HOVERGEN:HBG105006
InParanoid:P31483 OrthoDB:EOG4B5P59 PhylomeDB:P31483 ChiTaRS:TIA1
EvolutionaryTrace:P31483 GenomeRNAi:7072 NextBio:27655
ArrayExpress:P31483 Bgee:P31483 CleanEx:HS_TIA1
Genevestigator:P31483 GermOnline:ENSG00000116001 Uniprot:P31483
Length = 386
Score = 116 (45.9 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 32/115 (27%), Positives = 62/115 (53%)
Query: 26 CVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR-PSSE-------- 76
C ++ TA + Y FV +H A A+ +NG ++ K +KV++A PSS+
Sbjct: 36 CKMIMDTAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSST 95
Query: 77 --SIKGA----NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYY 125
S + + +++V L ++ +++++ F+P+GRI +R++ D +AT K Y
Sbjct: 96 VVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKD-MATGKSKGY 149
>MGI|MGI:107914 [details] [associations]
symbol:Tia1 "cytotoxic granule-associated RNA binding protein
1" species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0017091 "AU-rich element binding"
evidence=IDA] [GO:0017148 "negative regulation of translation"
evidence=IMP] [GO:0042036 "negative regulation of cytokine
biosynthetic process" evidence=IMP] [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:107914 GO:GO:0005634 GO:GO:0006915 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 GO:GO:0010494 eggNOG:COG0724 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:U00689
EMBL:U55862 IPI:IPI00132462 PIR:S72435 RefSeq:NP_035715.1
UniGene:Mm.333219 PDB:2DGO PDB:2RNE PDBsum:2DGO PDBsum:2RNE
ProteinModelPortal:P52912 SMR:P52912 STRING:P52912
PhosphoSite:P52912 PaxDb:P52912 PRIDE:P52912
Ensembl:ENSMUST00000095753 GeneID:21841 KEGG:mmu:21841
InParanoid:P52912 OMA:TSAPWMG EvolutionaryTrace:P52912
NextBio:301304 Bgee:P52912 Genevestigator:P52912
GermOnline:ENSMUSG00000071337 Uniprot:P52912
Length = 386
Score = 116 (45.9 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 32/115 (27%), Positives = 62/115 (53%)
Query: 26 CVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR-PSSE-------- 76
C ++ TA + Y FV +H A A+ +NG ++ K +KV++A PSS+
Sbjct: 36 CKMIMDTAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSST 95
Query: 77 --SIKGA----NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYY 125
S + + +++V L ++ +++++ F+P+GRI +R++ D +AT K Y
Sbjct: 96 VVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKD-MATGKSKGY 149
>ZFIN|ZDB-GENE-040426-1547 [details] [associations]
symbol:tial1 "TIA1 cytotoxic granule-associated
RNA binding protein-like 1" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1547 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00680000099967 EMBL:BX530079
IPI:IPI00920337 ProteinModelPortal:E9QJJ0
Ensembl:ENSDART00000135321 ArrayExpress:E9QJJ0 Bgee:E9QJJ0
Uniprot:E9QJJ0
Length = 389
Score = 116 (45.9 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 27/92 (29%), Positives = 51/92 (55%)
Query: 38 YGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR-PSSESIKGAN---LYVSGLPKHMS 93
Y FV + DA A+ +NG ++ K +KV++A PSS+ +N ++V L ++
Sbjct: 68 YCFVEFFEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEIT 127
Query: 94 QQELESLFSPYGRIITSRILCDNLATENGKYY 125
++ + F+P+G+I +R++ D + T K Y
Sbjct: 128 TDDIRAAFAPFGKISDARVVKD-MTTGKSKGY 158
Score = 85 (35.0 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 22/62 (35%), Positives = 38/62 (61%)
Query: 21 SDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR---PSSES 77
SDA + V ++T +S GYGFV+++ DAE AI + G L + I+ ++A P+ +S
Sbjct: 142 SDARV-VKDMTTGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKS 200
Query: 78 IK 79
++
Sbjct: 201 VQ 202
Score = 55 (24.4 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 9/39 (23%), Positives = 21/39 (53%)
Query: 74 SSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRI 112
+ S + +Y G+ +++ + FSP+G+I+ R+
Sbjct: 216 NQSSPQNCTVYCGGIQSGLTEHLMRQTFSPFGQIMEIRV 254
>UNIPROTKB|H0Y5F5 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL365277 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000421687 Uniprot:H0Y5F5
Length = 550
Score = 117 (46.2 bits), Expect = 3.5e-06, P = 3.5e-06
Identities = 33/118 (27%), Positives = 58/118 (49%)
Query: 20 FSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY--ARPSSES 77
F + C + S GY FV++ E A+KAI +NG+ L ++ + V +R E+
Sbjct: 24 FGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 83
Query: 78 IKGA------NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYYSGLG 129
GA N+Y+ + + + L+ LFS +G+ ++ +++ D NGK G G
Sbjct: 84 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD----PNGKS-KGFG 136
Score = 90 (36.7 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 34 QSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
+S G+GFV+Y + EDA KA+ +NG + K I V A+ E
Sbjct: 131 KSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVE 173
Score = 71 (30.1 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 11/38 (28%), Positives = 24/38 (63%)
Query: 79 KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
+G NLY+ L + ++L FSP+G I +++++ ++
Sbjct: 194 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED 231
>SGD|S000005483 [details] [associations]
symbol:HRP1 "Subunit of cleavage factor I" species:4932
"Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0006378 "mRNA polyadenylation" evidence=IMP;IDA]
[GO:0005849 "mRNA cleavage factor complex" evidence=IPI]
[GO:0006379 "mRNA cleavage" evidence=IDA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SGD:S000005483
EMBL:BK006948 GO:GO:0000184 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0010494 eggNOG:COG0724
GO:GO:0006379 GO:GO:0005849 KO:K14411 GeneTree:ENSGT00700000104255
EMBL:U35737 EMBL:U38535 EMBL:X95258 EMBL:Z74865 PIR:S66820
RefSeq:NP_014518.1 PDB:2CJK PDB:2KM8 PDBsum:2CJK PDBsum:2KM8
ProteinModelPortal:Q99383 SMR:Q99383 DIP:DIP-1371N IntAct:Q99383
MINT:MINT-395353 STRING:Q99383 PaxDb:Q99383 PeptideAtlas:Q99383
EnsemblFungi:YOL123W GeneID:853997 KEGG:sce:YOL123W CYGD:YOL123w
HOGENOM:HOG000248803 OMA:AREEQDK OrthoDB:EOG4TF3VC
EvolutionaryTrace:Q99383 NextBio:975491 Genevestigator:Q99383
GermOnline:YOL123W Uniprot:Q99383
Length = 534
Score = 117 (46.2 bits), Expect = 3.3e-06, P = 3.3e-06
Identities = 24/85 (28%), Positives = 45/85 (52%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T +S G+GF+++ +P ++ + T + L K I A P E K ++V G+
Sbjct: 195 ATGRSRGFGFLSFEKPSSVDEVVKTQH--ILDGKVIDPKRAIPRDEQDKTGKIFVGGIGP 252
Query: 91 HMSQQELESLFSPYGRIITSRILCD 115
+ +E E FS +G II ++++ D
Sbjct: 253 DVRPKEFEEFFSQWGTIIDAQLMLD 277
>UNIPROTKB|A4QUF0 [details] [associations]
symbol:PAB1 "Polyadenylate-binding protein, cytoplasmic and
nuclear" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000166
EMBL:CM001233 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043581 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
OrthoDB:EOG4QJVWJ RefSeq:XP_003712237.1 ProteinModelPortal:A4QUF0
SMR:A4QUF0 STRING:A4QUF0 EnsemblFungi:MGG_09505T0 GeneID:2680542
KEGG:mgr:MGG_09505 Uniprot:A4QUF0
Length = 762
Score = 118 (46.6 bits), Expect = 4.2e-06, P = 4.2e-06
Identities = 31/97 (31%), Positives = 47/97 (48%)
Query: 35 SLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE------SIKG--ANLYVS 86
S GYGFV+Y E A +AI +NG+ L K + V + P + +K N+YV
Sbjct: 188 SKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFDEMKANFTNIYVK 247
Query: 87 GLPKHMSQQELESLFSPYGRIITSRILCDNLATENGK 123
+ ++ E +LF YG + +S + D E GK
Sbjct: 248 NINPEVTDDEFRTLFEKYGDVTSSSLARDQ---ETGK 281
Score = 118 (46.6 bits), Expect = 4.2e-06, P = 4.2e-06
Identities = 29/124 (23%), Positives = 61/124 (49%)
Query: 2 VYQTLLNKLFTYEKVHLG-FSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLR 60
V + +L +LF+ +G + +C + T +SLGY +VNY+ D EKA+ LN
Sbjct: 72 VTEAMLFELFS----QIGSVASIRVCRDAV-TRRSLGYAYVNYNTTADGEKALEELNYTL 126
Query: 61 LQNKTIKVSYAR--PSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLA 118
++ + ++ +++ P+ N+++ L + + L F+ +G I++ ++ D
Sbjct: 127 IKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENG 186
Query: 119 TENG 122
G
Sbjct: 187 NSKG 190
>UNIPROTKB|E7EPF2 [details] [associations]
symbol:RBMS1 "RNA-binding motif,
single-stranded-interacting protein 1" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC092153 EMBL:AC104598
EMBL:AC131754 HGNC:HGNC:9907 ChiTaRS:RBMS1 EMBL:AC133105
IPI:IPI01011353 ProteinModelPortal:E7EPF2 SMR:E7EPF2
Ensembl:ENST00000428519 ArrayExpress:E7EPF2 Bgee:E7EPF2
Uniprot:E7EPF2
Length = 128
Score = 105 (42.0 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 25/70 (35%), Positives = 39/70 (55%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T + GYGFV++ P A+KA++ L +Q + K P+ NLY+S LP
Sbjct: 65 TTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPT-------NLYISNLPL 117
Query: 91 HMSQQELESL 100
M +QELE++
Sbjct: 118 SMDEQELENM 127
Score = 97 (39.2 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 18/50 (36%), Positives = 29/50 (58%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYY 125
+ + NLY+ GLP H + Q+L L PYG+I++++ + D T K Y
Sbjct: 24 DQLSKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDK-TTNKCKGY 72
>WB|WBGene00006331 [details] [associations]
symbol:sup-26 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0017148 "negative regulation of translation"
evidence=IMP] [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009792 GO:GO:0005737 GO:GO:0040010 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0003730
EMBL:Z50874 GeneTree:ENSGT00630000089747 GeneID:175551
KEGG:cel:CELE_R10E4.2 CTD:175551 RefSeq:NP_001254892.1
ProteinModelPortal:D5MCR3 SMR:D5MCR3 EnsemblMetazoa:R10E4.2q
WormBase:R10E4.2q ArrayExpress:D5MCR3 Uniprot:D5MCR3
Length = 476
Score = 114 (45.2 bits), Expect = 5.9e-06, P = 5.9e-06
Identities = 25/83 (30%), Positives = 46/83 (55%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T GYGFV++ P+ A A++ LN + ++ A+ + NLY++ LP
Sbjct: 184 ATNNCKGYGFVDFESPQAAAAAVDGLN-----TEGVQAQMAKLQQQEQDPTNLYIANLPL 238
Query: 91 HMSQQELESLFSPYGRIITSRIL 113
++Q LE+ + +G +I++RIL
Sbjct: 239 DFTEQMLETELNKFGMVISTRIL 261
>ASPGD|ASPL0000010999 [details] [associations]
symbol:fabM species:162425 "Emericella nidulans"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BN001302 EMBL:AACD01000065
GO:GO:0051028 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
EMBL:U70731 RefSeq:XP_661604.1 ProteinModelPortal:Q5B630 SMR:Q5B630
STRING:Q5B630 PRIDE:Q5B630 EnsemblFungi:CADANIAT00004687
GeneID:2873424 KEGG:ani:AN4000.2 OMA:MIRITYS OrthoDB:EOG4QJVWJ
Uniprot:Q5B630
Length = 732
Score = 116 (45.9 bits), Expect = 6.5e-06, P = 6.5e-06
Identities = 28/124 (22%), Positives = 61/124 (49%)
Query: 2 VYQTLLNKLFTYEKVHLG-FSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLR 60
V + +L +LF+ +G + +C + T +SLGY +VNY+ E+A++ LN
Sbjct: 53 VTEAMLYELFS----SIGQVASIRVCRDAV-TRRSLGYAYVNYNDTAHGERALDELNYTL 107
Query: 61 LQNKTIKVSYAR--PSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLA 118
++ K ++ +++ P+ N+++ L + + L F+ +G I++ ++ D
Sbjct: 108 IKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFG 167
Query: 119 TENG 122
G
Sbjct: 168 VSKG 171
Score = 112 (44.5 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 29/96 (30%), Positives = 46/96 (47%)
Query: 35 SLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYA-----RPSS-ESIKG--ANLYVS 86
S GYGFV+Y E A AI +NG+ L +K + V + R S E +K N+Y+
Sbjct: 169 SKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIK 228
Query: 87 GLPKHMSQQELESLFSPYGRIITSRILCDNLATENG 122
+ + +E LF +G I ++ + D+ G
Sbjct: 229 NIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRG 264
Score = 82 (33.9 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 79 KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATE 120
+G NLYV L + +L LF PYG I +++++ D E
Sbjct: 324 QGVNLYVKNLTDDVDDDKLRELFGPYGTITSAKVMRDTAPVE 365
Score = 70 (29.7 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 14/46 (30%), Positives = 26/46 (56%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
S +S G+GFVN+ E A+ A+ +N ++++ + V A+ E
Sbjct: 258 SEGKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGRAQKKHE 303
>DICTYBASE|DDB_G0291486 [details] [associations]
symbol:DDB_G0291486 "putative splicing regulator"
species:44689 "Dictyostelium discoideum" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0291486 EMBL:AAFI02000177
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG251494
RefSeq:XP_635247.1 ProteinModelPortal:Q54EJ3
EnsemblProtists:DDB0233674 GeneID:8628193 KEGG:ddi:DDB_G0291486
InParanoid:Q54EJ3 OMA:PMGNGMN Uniprot:Q54EJ3
Length = 489
Score = 84 (34.6 bits), Expect = 7.2e-06, Sum P(2) = 7.2e-06
Identities = 18/67 (26%), Positives = 34/67 (50%)
Query: 57 NGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD- 115
NG+ N+ + + S +G+NL+V +P + S +L LF YG ++++++ D
Sbjct: 379 NGMGGMNQGGPMGNKKNQSVGPQGSNLFVYNIPNYFSDNDLLGLFQQYGIVVSAKVYVDK 438
Query: 116 NLATENG 122
N G
Sbjct: 439 NTGVSKG 445
Score = 76 (31.8 bits), Expect = 7.2e-06, Sum P(2) = 7.2e-06
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 24 EICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRL 61
+IC+ ++S G GF+ + E A AI TLNG++L
Sbjct: 119 DICILRGPNSESKGCGFIKFDNRESALSAIATLNGMKL 156
>POMBASE|SPBC660.15 [details] [associations]
symbol:SPBC660.15 "mRNA cleavage factor complex subunit
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR binding"
evidence=NAS] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005849 "mRNA cleavage factor
complex" evidence=ISO] [GO:0006378 "mRNA polyadenylation"
evidence=ISO] [GO:0006379 "mRNA cleavage" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC660.15 GO:GO:0005737 GO:GO:0000166
EMBL:CU329671 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003730
eggNOG:COG0724 GO:GO:0006379 GO:GO:0005849 KO:K14411 HSSP:Q14103
OrthoDB:EOG4TF3VC PIR:T40627 RefSeq:NP_595094.1
ProteinModelPortal:O94432 SMR:O94432 STRING:O94432
EnsemblFungi:SPBC660.15.1 GeneID:2541150 KEGG:spo:SPBC660.15
OMA:CHKANDG NextBio:20802263 Uniprot:O94432
Length = 474
Score = 113 (44.8 bits), Expect = 7.5e-06, P = 7.5e-06
Identities = 22/85 (25%), Positives = 46/85 (54%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPK 90
+T +S G+GF+ + P+ + ++ + L K I A P E K A ++V G+P
Sbjct: 199 TTGRSRGFGFLTFKNPKCVNEVMSKEH--HLDGKIIDPKRAIPREEQEKTAKMFVGGVPG 256
Query: 91 HMSQQELESLFSPYGRIITSRILCD 115
+++E + F+ +GR++ + ++ D
Sbjct: 257 DCTEEEFRNFFNQFGRVLDATLMMD 281
>UNIPROTKB|F1MN26 [details] [associations]
symbol:F1MN26 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 GO:GO:0005689 EMBL:DAAA02057528
IPI:IPI00686039 Ensembl:ENSBTAT00000013961 OMA:ITVSHAF
Uniprot:F1MN26
Length = 398
Score = 111 (44.1 bits), Expect = 9.4e-06, P = 9.4e-06
Identities = 31/99 (31%), Positives = 53/99 (53%)
Query: 30 ISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIK-GANLYVSGL 88
++ Q GYGFV + ++A+ AI +N ++ K +V+ A S+ + GAN+++ L
Sbjct: 49 VTVGQHQGYGFVEFLSGKNADYAIKIMNMIKRYGKPTRVNKASAHSKKLDVGANIFIGNL 108
Query: 89 PKHMSQQELESLFSPYGRII-TSRILCDNLATENGKYYS 126
+ + L FS +G I+ T RI+ N T N K Y+
Sbjct: 109 DPQIGKL-LYDTFSTFGVILQTPRIM-RNPDTGNSKGYA 145
WARNING: HSPs involving 96 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.136 0.387 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 136 136 0.00091 102 3 11 22 0.43 31
30 0.45 33
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 346
No. of states in DFA: 540 (57 KB)
Total size of DFA: 118 KB (2078 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 15.08u 0.11s 15.19t Elapsed: 00:00:02
Total cpu time: 15.12u 0.11s 15.23t Elapsed: 00:00:02
Start: Thu Aug 15 15:42:36 2013 End: Thu Aug 15 15:42:38 2013
WARNINGS ISSUED: 2