RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6353
(136 letters)
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 60.0 bits (145), Expect = 2e-13
Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 8/69 (11%)
Query: 37 GYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQQE 96
G +V Y DA+ A + L+G + N+ + V Y + K + +++
Sbjct: 47 GTAYVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYNANRAFQK--------MDTKKKEEQ 98
Query: 97 LESLFSPYG 105
L+ L YG
Sbjct: 99 LKLLKEKYG 107
Score = 31.1 bits (70), Expect = 0.017
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 83 LYVSGLPKHMSQQELESLFSPYGRII 108
LY+ LP ++ +E+ +F YG I
Sbjct: 10 LYIRNLPYKITAEEMYDIFGKYGPIR 35
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 52.3 bits (125), Expect = 9e-11
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSES 77
T S GY F Y ++AI LNG++L +K + V A +++
Sbjct: 39 TGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKN 84
Score = 28.1 bits (62), Expect = 0.13
Identities = 7/34 (20%), Positives = 21/34 (61%)
Query: 83 LYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
L++ GLP +++ +++ L + +G + ++ D+
Sbjct: 4 LFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDS 37
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 96
Score = 52.4 bits (125), Expect = 1e-10
Identities = 13/67 (19%), Positives = 28/67 (41%)
Query: 7 LNKLFTYEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTI 66
L+ T +++ F DA + +S G ++ + DAEK + G + +++
Sbjct: 24 LSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSV 83
Query: 67 KVSYARP 73
+ Y
Sbjct: 84 SLYYTGE 90
Score = 31.2 bits (70), Expect = 0.013
Identities = 6/32 (18%), Positives = 13/32 (40%)
Query: 73 PSSESIKGANLYVSGLPKHMSQQELESLFSPY 104
S + L L ++++ EL+ +F
Sbjct: 9 TSKKVRAARTLLAKNLSFNITEDELKEVFEDA 40
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 51.8 bits (124), Expect = 2e-10
Identities = 9/46 (19%), Positives = 20/46 (43%)
Query: 37 GYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGAN 82
G+ FV Y +A A+ +G + + + ++ A + G +
Sbjct: 51 GFAFVQYVNERNARAAVAGEDGRMIAGQVLDINLAAEPKVNRSGPS 96
Score = 36.0 bits (83), Expect = 2e-04
Identities = 7/36 (19%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 80 GANLYVSGLPKH-MSQQELESLFSPYGRIITSRILC 114
+ +++ L + + ++E++FS YG+I+ +
Sbjct: 15 NSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHK 50
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 51.6 bits (123), Expect = 2e-10
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 7 LNKLFTYEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTI 66
L + E + F+ + + Y FV++ EDA +A+ LNG L I
Sbjct: 16 LMLSTSEEMIEKEFN-NIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPI 74
Query: 67 KVSYARP 73
+V+ A+P
Sbjct: 75 EVTLAKP 81
Score = 30.4 bits (68), Expect = 0.019
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 83 LYVSGLPKHMSQQELESLFSPYGRIITSRI 112
LYV L S++ +E F+ R+
Sbjct: 11 LYVRNLMLSTSEEMIEKEFNNIKPGAVERV 40
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 82
Score = 51.3 bits (122), Expect = 2e-10
Identities = 40/58 (68%), Positives = 44/58 (75%)
Query: 17 HLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPS 74
+G ++ V T QSLGYGFVNY P+DAEKAINTLNGLRLQ KTIKVSYARPS
Sbjct: 25 SIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPS 82
Score = 33.5 bits (76), Expect = 0.001
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 82 NLYVSGLPKHMSQQELESLFSPYGR 106
NL V+ LP++M+Q+E SLF G
Sbjct: 4 NLIVNYLPQNMTQEEFRSLFGSIGE 28
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 51.6 bits (123), Expect = 3e-10
Identities = 18/60 (30%), Positives = 30/60 (50%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESI 78
G T Q GYGFV + EDA+ AI ++ ++L K I+V+ A ++++
Sbjct: 34 GPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKASAHNKNL 93
Score = 41.6 bits (97), Expect = 2e-06
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 73 PSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
P SE + A +YV GL + +S+ L LF G ++ + + D
Sbjct: 2 PISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDR 45
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 91
Score = 51.6 bits (123), Expect = 3e-10
Identities = 11/45 (24%), Positives = 22/45 (48%)
Query: 34 QSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESI 78
+ G FV + A A+ ++ G +K +++ YA+ S+ I
Sbjct: 44 KMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSDII 88
Score = 26.9 bits (59), Expect = 0.32
Identities = 10/49 (20%), Positives = 24/49 (48%), Gaps = 10/49 (20%)
Query: 72 RPSSESIKGANLYVSGLPKHMSQQELE----SLFSPYGRIITSRILCDN 116
RP+ +Y++ L + + + EL+ ++FS +G+I+ +
Sbjct: 1 RPNH------TIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSL 43
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 50.3 bits (120), Expect = 5e-10
Identities = 15/41 (36%), Positives = 31/41 (75%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR 72
T +SLGY +VN+ +P DAE+A++T+N ++ K +++ +++
Sbjct: 38 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 78
Score = 40.7 bits (95), Expect = 2e-06
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 81 ANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
A+LYV L +++ L FSP G I++ R+ D
Sbjct: 1 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDM 36
>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 99
Score = 50.7 bits (121), Expect = 6e-10
Identities = 10/39 (25%), Positives = 18/39 (46%)
Query: 37 GYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSS 75
G V++ PE+A+ I TL+G + I ++
Sbjct: 58 GVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDGTT 96
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation
factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 50.4 bits (120), Expect = 7e-10
Identities = 17/44 (38%), Positives = 29/44 (65%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSS 75
T QS G+ F+++HR EDA +AI ++G + + V +A+PS+
Sbjct: 46 TGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKPST 89
Score = 37.3 bits (86), Expect = 6e-05
Identities = 8/32 (25%), Positives = 17/32 (53%)
Query: 73 PSSESIKGANLYVSGLPKHMSQQELESLFSPY 104
P+ + A + V+ L + + +L+ LF P+
Sbjct: 1 PNRRADDNATIRVTNLSEDTRETDLQELFRPF 32
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 50.3 bits (120), Expect = 8e-10
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 38 YGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
+ FV Y+ DAE A+ +NG RL ++ I+ + E
Sbjct: 51 FCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFKE 89
Score = 35.3 bits (81), Expect = 3e-04
Identities = 11/47 (23%), Positives = 20/47 (42%)
Query: 79 KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYY 125
K LYV L + +++++ LFS G I + D + +
Sbjct: 6 KSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFC 52
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 50.1 bits (119), Expect = 1e-09
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 34 QSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSES 77
S +GFV+Y P A+ AI ++NG ++ K +KV R ++S
Sbjct: 58 LSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDS 101
Score = 35.1 bits (80), Expect = 5e-04
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 67 KVSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPY 104
+ A E +GANL++ LP+ Q+L +F P+
Sbjct: 5 SIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPF 42
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19,
Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 49.9 bits (119), Expect = 1e-09
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTL-NGLRLQNKTIKVSYARP 73
T G+GFV++ +DA+KA N L + L + + + +A
Sbjct: 47 TGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADS 89
Score = 37.6 bits (87), Expect = 4e-05
Identities = 11/47 (23%), Positives = 22/47 (46%)
Query: 79 KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYY 125
+ + V +P +Q+E+ LFS +G + T R+ T + +
Sbjct: 7 TTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGF 53
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 49.7 bits (118), Expect = 1e-09
Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 2/66 (3%)
Query: 13 YEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNG--LRLQNKTIKVSY 70
KV G D + ++ G+ FV Y A A L ++L I V +
Sbjct: 22 IAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDW 81
Query: 71 ARPSSE 76
A P +
Sbjct: 82 AEPEID 87
Score = 32.0 bits (72), Expect = 0.007
Identities = 5/27 (18%), Positives = 13/27 (48%)
Query: 83 LYVSGLPKHMSQQELESLFSPYGRIIT 109
L++ G+PK ++E+ + +
Sbjct: 4 LFIGGIPKMKKREEILEEIAKVTEGVL 30
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 49.3 bits (117), Expect = 1e-09
Identities = 32/51 (62%), Positives = 37/51 (72%)
Query: 75 SESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYY 125
S SI+ ANLYVSGLPK M+Q+ELE LFS YGRIITSRIL D + +
Sbjct: 1 SASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVG 51
Score = 39.3 bits (91), Expect = 1e-05
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 34 QSLGYGFVNYHRPEDAEKAINTLNGLRLQNKT--IKVSYA 71
S G GF+ + + +AE+AI LNG + T I V +A
Sbjct: 46 VSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 85
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 49.6 bits (118), Expect = 2e-09
Identities = 14/79 (17%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Query: 7 LNKLFTYEKVH-LGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNG--LRLQN 63
L T + +H + + + T + + Y P A+ A +L+G +
Sbjct: 15 LFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNAC 74
Query: 64 KTIKVSYARPSSESIKGAN 82
T+++ +++ +S ++K N
Sbjct: 75 CTLRIDFSKLTSLNVKYNN 93
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 90
Score = 49.3 bits (117), Expect = 2e-09
Identities = 14/57 (24%), Positives = 26/57 (45%)
Query: 20 FSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
+ C + + Y FV ++ DA A+ +NG ++ K +KV++A S
Sbjct: 32 IGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSS 88
Score = 31.9 bits (72), Expect = 0.006
Identities = 8/43 (18%), Positives = 22/43 (51%)
Query: 83 LYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYY 125
LYV L + +++ + LFS G + +++ ++ + + +
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFV 53
>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 48.6 bits (115), Expect = 3e-09
Identities = 17/53 (32%), Positives = 30/53 (56%)
Query: 25 ICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSES 77
+ V T +S G+GFV + +DA+ A+ +NG + + I+V A SS++
Sbjct: 36 VVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSSDN 88
Score = 25.5 bits (55), Expect = 1.2
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Query: 74 SSESIKGANLYVSGLPKHMSQQELESLFSPY 104
+S+ K L+V GL ++Q LE +FS Y
Sbjct: 2 ASDEGK---LFVGGLSFDTNEQSLEQVFSKY 29
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 48.0 bits (114), Expect = 4e-09
Identities = 19/49 (38%), Positives = 28/49 (57%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKY 124
ESIK NLYV+ LP+ ++ +L+++F YG I+ IL D L
Sbjct: 2 ESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGV 50
Score = 45.7 bits (108), Expect = 3e-08
Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 26 CVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQ--NKTIKVSYA 71
+ T + G FV Y++ E+A++AI+ LN + + ++ + V A
Sbjct: 38 ILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 85
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 47.7 bits (113), Expect = 6e-09
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARP 73
T + G+ FV + EDA AI+ +N L +TI+V+ A+P
Sbjct: 43 TEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKP 84
Score = 33.9 bits (77), Expect = 0.001
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 83 LYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
LYV GL + + + L + F P+G I +I D
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDY 41
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19,
Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 46.9 bits (111), Expect = 1e-08
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 38 YGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSS 75
+GFV Y +PE A+KA+ L G + ++V + ++
Sbjct: 45 FGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISERAT 82
Score = 36.9 bits (85), Expect = 8e-05
Identities = 8/43 (18%), Positives = 16/43 (37%)
Query: 83 LYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYY 125
L++ L +++ L+ +FS G I + I
Sbjct: 1 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSM 43
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 82
Score = 46.9 bits (111), Expect = 1e-08
Identities = 21/48 (43%), Positives = 31/48 (64%)
Query: 26 CVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARP 73
+ T S GY FV++ D+++AI LNG+ ++NK +KVSYARP
Sbjct: 34 IMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARP 81
Score = 39.2 bits (91), Expect = 1e-05
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 82 NLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
NL V+ LP+ M+ +EL +LF G I T RI+ D
Sbjct: 4 NLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDY 38
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
octamer-binding protein, NonO {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 46.9 bits (111), Expect = 1e-08
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 38 YGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSS 75
+GF+ AE A L+ + L+ K ++V +A S+
Sbjct: 46 FGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSA 83
Score = 31.5 bits (71), Expect = 0.008
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 82 NLYVSGLPKHMSQQELESLFSPYGR 106
L+V LP ++++E+ LF YG+
Sbjct: 10 RLFVGNLPPDITEEEMRKLFEKYGK 34
>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 104
Score = 47.1 bits (111), Expect = 1e-08
Identities = 9/51 (17%), Positives = 17/51 (33%)
Query: 27 VFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSES 77
+S +N+ P A A L+ K +K+ +A+
Sbjct: 37 DTTFQYFKSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQTLHIG 87
Score = 30.1 bits (67), Expect = 0.035
Identities = 7/41 (17%), Positives = 14/41 (34%)
Query: 73 PSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRIL 113
S + + ++ + ESLF Y + T +
Sbjct: 3 SGSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYF 43
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 78
Score = 46.5 bits (110), Expect = 2e-08
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 24 EICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYA 71
+ V + +SLG V++ R DA KA+ NG+ L + + +
Sbjct: 29 KAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 76
Score = 34.5 bits (79), Expect = 5e-04
Identities = 10/43 (23%), Positives = 19/43 (44%)
Query: 83 LYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYY 125
L VS L +S +++ LF+ +G + + + D G
Sbjct: 3 LLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTAD 45
>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma
cruzi [TaxId: 5693]}
Length = 139
Score = 47.6 bits (112), Expect = 2e-08
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Query: 38 YGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE------SIKGANLYV 85
YGFV + A++AI LNG + NK +KV+ A + ++ N Y+
Sbjct: 86 YGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAASGHQRPGIAGAVGDGNGYL 139
Score = 30.3 bits (67), Expect = 0.044
Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 62 QNKTIKVSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPY 104
Q + I + P + ++ NL V+ +P + + +L LF Y
Sbjct: 26 QQQHIPPTQMNPEPDVLR--NLMVNYIPTTVDEVQLRQLFERY 66
>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 46.9 bits (111), Expect = 2e-08
Identities = 11/43 (25%), Positives = 17/43 (39%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPS 74
G FV + D +KA+ L G + N+ + Y P
Sbjct: 54 EVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDPD 96
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 46.5 bits (110), Expect = 2e-08
Identities = 8/45 (17%), Positives = 15/45 (33%), Gaps = 2/45 (4%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
T S G+GFV + E K ++ + + +
Sbjct: 46 TGHSKGFGFVRFTEYETQVKVMSQRHM--IDGRWCDCKLPNSKQS 88
Score = 35.7 bits (82), Expect = 2e-04
Identities = 12/37 (32%), Positives = 23/37 (62%)
Query: 79 KGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
K ++L V GLP ++Q+L+ FS +G ++ ++ D
Sbjct: 7 KTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKD 43
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 45.9 bits (108), Expect = 4e-08
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARP 73
T + G V+Y P A+ A+ +G Q +KVS AR
Sbjct: 54 TGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARK 95
Score = 34.8 bits (79), Expect = 7e-04
Identities = 8/41 (19%), Positives = 16/41 (39%)
Query: 75 SESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
E + +YV GL ++ +L F G + ++
Sbjct: 3 DEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQ 43
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 99
Score = 45.9 bits (108), Expect = 4e-08
Identities = 12/48 (25%), Positives = 22/48 (45%)
Query: 34 QSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGA 81
+ G+ FV + PE A KA ++G Q + + V + E+ +
Sbjct: 48 KPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKKEASQSG 95
Score = 31.2 bits (70), Expect = 0.011
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 74 SSESIKGANLYVSGLPKHMSQQELESLFSPYG 105
SS S L+V L S+++LE LFS YG
Sbjct: 2 SSGSSGSGRLFVRNLSYTSSEEDLEKLFSAYG 33
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 45.9 bits (108), Expect = 4e-08
Identities = 13/41 (31%), Positives = 17/41 (41%)
Query: 37 GYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSES 77
GYGF Y E A A+ LNG + ++V A
Sbjct: 51 GYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNK 91
Score = 25.1 bits (54), Expect = 1.8
Identities = 5/23 (21%), Positives = 15/23 (65%)
Query: 82 NLYVSGLPKHMSQQELESLFSPY 104
+++V +P ++++L+ +FS
Sbjct: 10 SVFVGNIPYEATEEQLKDIFSEV 32
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 45.3 bits (107), Expect = 6e-08
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 38 YGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPS 74
Y FV + E A AI ++NG ++ +K + + S
Sbjct: 56 YSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKES 92
Score = 38.0 bits (88), Expect = 3e-05
Identities = 11/43 (25%), Positives = 22/43 (51%)
Query: 74 SSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
+ S K +Y G+ ++ Q + FSP+G+I+ R+ +
Sbjct: 12 NQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEK 54
>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E
{Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 44.6 bits (105), Expect = 8e-08
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 7/72 (9%)
Query: 8 NKLF------TYEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRL 61
N L+ T + FS + +S FV Y + E A++A+ LNG ++
Sbjct: 6 NTLYVYGEDMTPTLLRGAFSPFGNIID-LSMDPPRNCAFVTYEKMESADQAVAELNGTQV 64
Query: 62 QNKTIKVSYARP 73
++ +KV+ AR
Sbjct: 65 ESVQLKVNIARK 76
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 88
Score = 44.7 bits (105), Expect = 1e-07
Identities = 13/40 (32%), Positives = 18/40 (45%)
Query: 34 QSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARP 73
S GY V Y + A A LNG + +TI+V +
Sbjct: 47 FSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFV 86
Score = 35.9 bits (82), Expect = 2e-04
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYG 105
S++G L+V+ + + + E++ F YG
Sbjct: 3 RSVEGWILFVTSIHEEAQEDEIQEKFCDYG 32
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 44.6 bits (105), Expect = 1e-07
Identities = 17/51 (33%), Positives = 27/51 (52%)
Query: 26 CVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
C + S GYGFV++ E AE+AI +NG+ L ++ + V + E
Sbjct: 38 CKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKE 88
Score = 40.8 bits (95), Expect = 3e-06
Identities = 12/44 (27%), Positives = 23/44 (52%)
Query: 73 PSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
PS N+++ L K + + L FS +G I++ +++CD
Sbjct: 1 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE 44
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 44.4 bits (104), Expect = 1e-07
Identities = 17/45 (37%), Positives = 24/45 (53%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
T S GY F+N+ + ++ AI +NG L N+ I VSYA
Sbjct: 37 TGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDS 81
Score = 36.3 bits (83), Expect = 1e-04
Identities = 7/37 (18%), Positives = 18/37 (48%)
Query: 83 LYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLAT 119
+++ L + ++ L FS +G I+ + + + T
Sbjct: 1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDT 37
>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9
(SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 98
Score = 44.4 bits (104), Expect = 1e-07
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 38 YGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKG 80
G V Y R ED E A+ L+ + ++ + SY R E G
Sbjct: 52 MGMVEYLRKEDMEYALRKLDDTKFRSHEGETSYIRVYPERSSG 94
Score = 25.1 bits (54), Expect = 1.8
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 83 LYVSGLPKHMSQQELESLFSPY 104
+ VSGLP S Q+L+
Sbjct: 18 VLVSGLPPSGSWQDLKDHMREA 39
>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 44.4 bits (104), Expect = 2e-07
Identities = 14/66 (21%), Positives = 25/66 (37%)
Query: 38 YGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQQEL 97
V A+ A++ LNG +L K I+++ ++ + + GL K L
Sbjct: 42 NALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPL 101
Query: 98 ESLFSP 103
P
Sbjct: 102 HRFKKP 107
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 43.5 bits (102), Expect = 3e-07
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 34 QSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARP 73
S G+GFV + DA++A L+G ++ + I+V+ A
Sbjct: 49 GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 88
Score = 33.9 bits (77), Expect = 0.001
Identities = 10/42 (23%), Positives = 19/42 (45%)
Query: 74 SSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
S L+VS +P +L +F +G+I+ I+ +
Sbjct: 5 SESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFN 46
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 43.1 bits (101), Expect = 4e-07
Identities = 12/74 (16%), Positives = 26/74 (35%), Gaps = 2/74 (2%)
Query: 7 LNKLFTYEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTI 66
T +++ FS + + + FV + + A+ L ++ ++
Sbjct: 13 CTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCG--EDLIIKGISV 70
Query: 67 KVSYARPSSESIKG 80
+S A P S G
Sbjct: 71 HISNAEPKHNSNSG 84
Score = 31.2 bits (70), Expect = 0.012
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 81 ANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
+ ++V M++ EL FS YG ++ I
Sbjct: 6 SGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPF 41
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich
1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 43.1 bits (101), Expect = 4e-07
Identities = 11/48 (22%), Positives = 20/48 (41%)
Query: 26 CVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARP 73
+ L + + FV + P DAE A+ +G ++V + R
Sbjct: 43 DIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRS 90
Score = 30.4 bits (68), Expect = 0.025
Identities = 9/42 (21%), Positives = 16/42 (38%)
Query: 83 LYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKY 124
+YV LP + +++E +F YG I +
Sbjct: 17 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFV 58
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 77
Score = 42.7 bits (100), Expect = 5e-07
Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYA 71
G + + T +S G+GFV + +K + + L +KTI A
Sbjct: 25 GEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLA-QSRHELDSKTIDPKVA 76
Score = 33.8 bits (77), Expect = 8e-04
Identities = 6/32 (18%), Positives = 15/32 (46%)
Query: 83 LYVSGLPKHMSQQELESLFSPYGRIITSRILC 114
+++ GL +Q+ L F +G + ++
Sbjct: 3 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMR 34
>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins
A2/B1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 43.1 bits (101), Expect = 5e-07
Identities = 10/61 (16%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Query: 17 HLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
G + + ++ +S G+GFV + + + A+ + + ++ A E
Sbjct: 43 QWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA-ARPHSIDGRVVEPKRAVAREE 101
Query: 77 S 77
S
Sbjct: 102 S 102
Score = 35.4 bits (81), Expect = 3e-04
Identities = 10/52 (19%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 64 KTIK-VSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILC 114
KT++ V R E + L++ GL +++ L + + +G++ ++
Sbjct: 3 KTLETVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMR 54
>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 42.4 bits (99), Expect = 9e-07
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 34 QSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSS 75
+S GYGFV AE+A N + + + V+ A +
Sbjct: 50 KSRGYGFVTMADRAAAERACKDPNPI-IDGRKANVNLAYLGA 90
Score = 25.9 bits (56), Expect = 0.90
Identities = 12/52 (23%), Positives = 22/52 (42%)
Query: 73 PSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKY 124
S + ++V GLP H + L F +G I + ++ D ++ Y
Sbjct: 3 GSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGY 54
>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 98
Score = 41.7 bits (97), Expect = 2e-06
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 6/50 (12%)
Query: 34 QSLGYGFVNYHRPEDAEKAINTLN------GLRLQNKTIKVSYARPSSES 77
S G F + E A+K + + GL+L + +KV A E+
Sbjct: 48 HSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAVTRDEA 97
Score = 30.2 bits (67), Expect = 0.030
Identities = 6/42 (14%), Positives = 18/42 (42%)
Query: 75 SESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
S+ +G +++ L ++ L + +G + R++
Sbjct: 3 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHP 44
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 86
Score = 41.2 bits (96), Expect = 2e-06
Identities = 7/40 (17%), Positives = 16/40 (40%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYA 71
G V + ++A A+ LN + ++ +K+
Sbjct: 47 KGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 86
Score = 29.6 bits (66), Expect = 0.040
Identities = 12/44 (27%), Positives = 16/44 (36%)
Query: 73 PSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
SS + V +P +S E+ F Y I S L N
Sbjct: 2 ASSGKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYN 45
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing
factor PRP24 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 81
Score = 41.3 bits (96), Expect = 2e-06
Identities = 11/55 (20%), Positives = 23/55 (41%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARP 73
I + + S + +++ EDA + LNGL+++ T+ + P
Sbjct: 26 NVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNP 80
Score = 34.4 bits (78), Expect = 7e-04
Identities = 4/26 (15%), Positives = 11/26 (42%)
Query: 83 LYVSGLPKHMSQQELESLFSPYGRII 108
L+++ P +Q+ + L +
Sbjct: 4 LWMTNFPPSYTQRNIRDLLQDINVVA 29
>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 83
Score = 41.4 bits (96), Expect = 2e-06
Identities = 9/67 (13%), Positives = 23/67 (34%), Gaps = 1/67 (1%)
Query: 7 LNKLFTYEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRL-QNKT 65
L + + + F+ + FV + + A L G ++
Sbjct: 16 LPEETNEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFTTELQSNAAKEALQGFKITPTHA 75
Query: 66 IKVSYAR 72
+K+++A+
Sbjct: 76 MKITFAK 82
Score = 23.7 bits (50), Expect = 4.7
Identities = 6/25 (24%), Positives = 14/25 (56%)
Query: 83 LYVSGLPKHMSQQELESLFSPYGRI 107
L+++ LP+ ++ L LF+ +
Sbjct: 11 LFLTNLPEETNEMMLSMLFNQFPGF 35
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 40.7 bits (95), Expect = 2e-06
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYA 71
T +S G+GFV + E +K ++ +L K I A
Sbjct: 37 TGRSRGFGFVLFKESESVDKVMD-QKEHKLNGKVIDPKRA 75
Score = 31.5 bits (71), Expect = 0.006
Identities = 7/33 (21%), Positives = 19/33 (57%)
Query: 83 LYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
+++ GL ++++L+ FS +G ++ + D
Sbjct: 2 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLD 34
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 75
Score = 40.5 bits (94), Expect = 3e-06
Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 17 HLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYA 71
G D + +F +T + G+GFV + + EK ++ + NK ++ A
Sbjct: 22 QFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75
Score = 30.9 bits (69), Expect = 0.013
Identities = 6/34 (17%), Positives = 20/34 (58%)
Query: 83 LYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
++V GL + + ++++ F +G++ + ++ D
Sbjct: 2 IFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDK 35
>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing
factor PRP24 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 86
Score = 40.5 bits (94), Expect = 4e-06
Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 31 STAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARP 73
+ + F+ + + AE+A+ +N L N+ I VS A
Sbjct: 43 EHSFNNCCAFMVFENKDSAERALQ-MNRSLLGNREISVSLADK 84
Score = 30.5 bits (68), Expect = 0.018
Identities = 7/50 (14%), Positives = 15/50 (30%), Gaps = 1/50 (2%)
Query: 77 SIKGANLYVSGLPKHMSQQE-LESLFSPYGRIITSRILCDNLATENGKYY 125
+++G + + L + + L F +G I I
Sbjct: 1 TLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCC 50
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 41.9 bits (97), Expect = 5e-06
Identities = 7/40 (17%), Positives = 14/40 (35%), Gaps = 1/40 (2%)
Query: 37 GYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
G+ FV + + +K + + +V A E
Sbjct: 140 GFAFVTFDDHDSVDKIVI-QKYHTVNGHNCEVRKALSKQE 178
Score = 36.9 bits (84), Expect = 2e-04
Identities = 8/34 (23%), Positives = 16/34 (47%)
Query: 83 LYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
L++ GL + + L S F +G + ++ D
Sbjct: 9 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDP 42
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor
10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 39.7 bits (92), Expect = 6e-06
Identities = 14/52 (26%), Positives = 25/52 (48%)
Query: 17 HLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKV 68
G V+ + +S G+ FV + +DA++A NG+ L + I+V
Sbjct: 32 KYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 83
Score = 35.4 bits (81), Expect = 3e-04
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 80 GANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
L V GL + ++++L +FS YG I I+ D
Sbjct: 9 NCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQ 45
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 39.7 bits (92), Expect = 7e-06
Identities = 9/49 (18%), Positives = 17/49 (34%)
Query: 34 QSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGAN 82
++ FV E A+ AI + + K + V + G +
Sbjct: 38 RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDALLCSGPS 86
Score = 28.2 bits (62), Expect = 0.15
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 77 SIKGANLYVSGLPKHMSQQELESLFSPYGR 106
S + + V LP+ + QE+ L Y
Sbjct: 2 SSGSSGILVKNLPQDSNCQEVHDLLKDYDL 31
>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 97
Score = 40.0 bits (93), Expect = 7e-06
Identities = 8/42 (19%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 38 YGFVNYHRPEDAEKAINTLNGLRL--QNKTIKVSYARPSSES 77
+ ++ Y + A+ A + G L ++ ++V +A+ S
Sbjct: 55 FAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKSGPSS 96
Score = 28.1 bits (62), Expect = 0.14
Identities = 9/38 (23%), Positives = 15/38 (39%), Gaps = 4/38 (10%)
Query: 67 KVSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPY 104
K+ Y + + L+V GL + S L F +
Sbjct: 8 KIGYGK----ANPTTRLWVGGLGPNTSLAALAREFDRF 41
>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif,
single-stranded-interacting protein 1, RBMS1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 39.8 bits (92), Expect = 8e-06
Identities = 10/40 (25%), Positives = 13/40 (32%)
Query: 34 QSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARP 73
S G GF E E I NG ++ + P
Sbjct: 57 TSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEP 96
Score = 30.5 bits (68), Expect = 0.023
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 61 LQNKTIKVSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPY 104
L+ ++ A+ + NLY+S LP M +QELE++ P+
Sbjct: 1 LKASGVQAQMAKQQEQD--PTNLYISNLPLSMDEQELENMLKPF 42
>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8,
ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 39.3 bits (91), Expect = 1e-05
Identities = 12/70 (17%), Positives = 27/70 (38%), Gaps = 6/70 (8%)
Query: 7 LNKLFTYEKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRL----- 61
L + ++ + + + Y F Y E++++A TLNG +
Sbjct: 28 LGNGVSRNQLLPVLEKCGLVDA-LLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLG 86
Query: 62 QNKTIKVSYA 71
Q T+ +++
Sbjct: 87 QKITLYLNFV 96
Score = 28.5 bits (63), Expect = 0.13
Identities = 5/43 (11%), Positives = 16/43 (37%)
Query: 62 QNKTIKVSYARPSSESIKGANLYVSGLPKHMSQQELESLFSPY 104
++ ++ S + + + GL +S+ +L +
Sbjct: 2 KHTLLRHEGIETVSYATQSLVVANGGLGNGVSRNQLLPVLEKC 44
>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 39.0 bits (90), Expect = 2e-05
Identities = 10/45 (22%), Positives = 23/45 (51%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
T + G F+ + E A +A++ +NG +L K + + + + +
Sbjct: 56 TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGKNKKQ 100
Score = 29.8 bits (66), Expect = 0.046
Identities = 8/34 (23%), Positives = 16/34 (47%)
Query: 82 NLYVSGLPKHMSQQELESLFSPYGRIITSRILCD 115
LY+ L +++++L SLF+ + I
Sbjct: 20 VLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFR 53
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 37.6 bits (87), Expect = 3e-05
Identities = 7/53 (13%), Positives = 18/53 (33%), Gaps = 1/53 (1%)
Query: 19 GFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYA 71
G ++ T + G+ F+ + E +K + + ++ A
Sbjct: 24 GEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75
Score = 33.8 bits (77), Expect = 0.001
Identities = 7/42 (16%), Positives = 19/42 (45%)
Query: 83 LYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKY 124
++V GL ++++ F +G + + + DN + +
Sbjct: 2 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGF 43
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 37.8 bits (87), Expect = 4e-05
Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKG 80
+ G+G+ + + A++ LN L NK I+V A + + G
Sbjct: 53 PERLKGFGYAEFEDLDSLLSALS-LNEESLGNKRIRVDVADQAQDKDSG 100
Score = 28.2 bits (62), Expect = 0.14
Identities = 3/34 (8%), Positives = 12/34 (35%)
Query: 83 LYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
++ LP ++++ ++ F +
Sbjct: 18 AFLGNLPYDVTEESIKEFFRGLNISAVRLPREPS 51
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif,
single-stranded-interacting protein 2, RBMS2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 37.1 bits (85), Expect = 5e-05
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 38 YGFVNYHRPEDAEKAINTLNGLRLQNKTIK 67
YGFV++ P A+KA+ L +Q + K
Sbjct: 42 YGFVDFDSPSAAQKAVTALKASGVQAQMAK 71
Score = 25.5 bits (55), Expect = 0.96
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 83 LYVSGLPKHMSQQELESLFSPY 104
LY+ GL + Q+L L PY
Sbjct: 1 LYIRGLQPGTTDQDLVKLCQPY 22
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 37.3 bits (86), Expect = 6e-05
Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 6/70 (8%)
Query: 7 LNKLFTYEKVHLGFSDAEICVFLIS-----TAQSLGYGFVNYHRPEDAEKAINTLNGLRL 61
L+ T E + F + T +S G+GFV Y E+ + A+N ++
Sbjct: 14 LSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN-ARPHKV 72
Query: 62 QNKTIKVSYA 71
+ ++ A
Sbjct: 73 DGRVVEPKRA 82
Score = 31.2 bits (70), Expect = 0.011
Identities = 8/43 (18%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 83 LYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKYY 125
L++ GL + + L S F + +T ++ + T+ + +
Sbjct: 9 LFIGGLSFETTDESLRSHFEQW-GTLTDCVVMRDPNTKRSRGF 50
>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A
{Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 37.0 bits (85), Expect = 6e-05
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 37 GYGFVNYHRPEDAEKAINTLNG-LRLQNKTIKVSYARPSSE 76
GY FV+Y A +AI TL+G + L K ++V Y+
Sbjct: 38 GYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSKKL 78
Score = 32.0 bits (72), Expect = 0.004
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 83 LYVSGLPKHMSQQELESLFSPYGRIITSRILC 114
LY+ L ++ +L LF + ++L
Sbjct: 4 LYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL 35
>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein
L-like {Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 37.5 bits (86), Expect = 6e-05
Identities = 6/52 (11%), Positives = 18/52 (34%), Gaps = 2/52 (3%)
Query: 38 YGFVNYHRPEDAEKAINTL--NGLRLQNKTIKVSYARPSSESIKGANLYVSG 87
V + + A++ + + + + +Y+ + G + SG
Sbjct: 53 QALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSKRITRPGNSGPSSG 104
Score = 24.8 bits (53), Expect = 2.4
Identities = 4/22 (18%), Positives = 11/22 (50%)
Query: 83 LYVSGLPKHMSQQELESLFSPY 104
++V GL + + + +L +
Sbjct: 18 VHVRGLCESVVEADLVEALEKF 39
>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 37.0 bits (85), Expect = 8e-05
Identities = 7/47 (14%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 26 CVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR 72
V + Q + F+ + ++ +A+ +G+ Q +++K+
Sbjct: 38 PVLAVQINQDKNFAFLEFRSVDETTQAMA-FDGIIFQGQSLKIRRPH 83
Score = 30.5 bits (68), Expect = 0.017
Identities = 6/30 (20%), Positives = 14/30 (46%)
Query: 83 LYVSGLPKHMSQQELESLFSPYGRIITSRI 112
LYV +P ++++ + F+ R+
Sbjct: 4 LYVGNIPFGITEEAMMDFFNAQMRLGGLTQ 33
>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 37.3 bits (86), Expect = 8e-05
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARP 73
+ +S G +V + + AI L G RL I V ++
Sbjct: 56 SRRSKGIAYVEFCEIQSVPLAIG-LTGQRLLGVPIIVQASQA 96
Score = 35.0 bits (80), Expect = 5e-04
Identities = 11/44 (25%), Positives = 19/44 (43%)
Query: 73 PSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
S E ++ L + ++LE FS G++ RI+ D
Sbjct: 11 LSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDR 54
>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 111
Score = 37.2 bits (85), Expect = 9e-05
Identities = 7/41 (17%), Positives = 14/41 (34%)
Query: 37 GYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSES 77
V + P +A KA L + + + + +A
Sbjct: 47 ITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGVFG 87
>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein
2, PTBP2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 36.7 bits (84), Expect = 9e-05
Identities = 8/38 (21%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
Query: 38 YGFVNYHRPEDAEKAIN--TLNGLRLQNKTIKVSYARP 73
F+ E A +N + L+N+ I + Y+
Sbjct: 46 QAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNH 83
>d1jmta_ d.58.7.3 (A:) U2AF35
(35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 36.9 bits (85), Expect = 1e-04
Identities = 14/47 (29%), Positives = 20/47 (42%)
Query: 24 EICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSY 70
E+ V +G +V + R EDAEKA+ LN + I
Sbjct: 56 EMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAEL 102
Score = 30.4 bits (68), Expect = 0.022
Identities = 2/46 (4%), Positives = 12/46 (26%)
Query: 71 ARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
+++ + ++ + YG + + +
Sbjct: 18 QSADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL 63
>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 36.3 bits (83), Expect = 1e-04
Identities = 10/62 (16%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Query: 14 EKVHLGFSDAEICVFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRL-QNKTIKVSYAR 72
+ L S+ + + + E+A +A+ L+ L +N ++VS+++
Sbjct: 26 DLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 85
Query: 73 PS 74
+
Sbjct: 86 ST 87
Score = 28.2 bits (62), Expect = 0.12
Identities = 10/36 (27%), Positives = 20/36 (55%)
Query: 81 ANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
A L++S +P +S+++L+ LFS G ++
Sbjct: 11 ATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK 46
>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 89
Score = 34.8 bits (79), Expect = 4e-04
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 34 QSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVS 69
+V Y R EDA +AI +N + + +T+K S
Sbjct: 54 GPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKAS 89
Score = 25.9 bits (56), Expect = 0.90
Identities = 7/41 (17%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Query: 78 IKGANLYVSGLPKHMSQQELESLF---SPYGRIITSRILCD 115
++ ++V GL + ++ E+ +G+I I
Sbjct: 6 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNS 46
>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 91
Score = 34.5 bits (78), Expect = 8e-04
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARP 73
T + +G+V++ ED EKA+ L GL++ IK+ +
Sbjct: 50 TGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKG 90
Score = 32.2 bits (72), Expect = 0.005
Identities = 11/48 (22%), Positives = 18/48 (37%)
Query: 69 SYARPSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
S+ SES NL++ L + S EL+ S ++
Sbjct: 2 SHMVEGSESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVR 49
>d3begb1 d.58.7.1 (B:121-207) Splicing factor,
arginine/serine-rich 1, SFRS1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 87
Score = 34.1 bits (77), Expect = 0.001
Identities = 9/39 (23%), Positives = 18/39 (46%)
Query: 38 YGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSE 76
G V + R ED A+ L+ + ++ + +Y R +
Sbjct: 37 TGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 75
>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 103
Score = 33.7 bits (76), Expect = 0.002
Identities = 11/51 (21%), Positives = 17/51 (33%), Gaps = 1/51 (1%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGAN 82
Q LG V + +DA K+ L+ +L + V N
Sbjct: 46 NGQGLGQALVQFKNEDDARKSER-LHRKKLNGREAFVHVVTLEDMREIEKN 95
>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 32.9 bits (74), Expect = 0.003
Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGAN 82
+S G FV + E AEKA+ + R+ ++ I++ + + G +
Sbjct: 53 QGRSTGEAFVQFASQEIAEKALK-KHKERIGHRYIEIFKSSRAEVRTSGPS 102
>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP
A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 31.6 bits (71), Expect = 0.006
Identities = 6/40 (15%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
Query: 32 TAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYA 71
+ + G+ FV + + +K + + +V A
Sbjct: 40 SGKKRGFAFVTFDDHDSVDKIVI-QKYHTVNGHNCEVRKA 78
Score = 28.9 bits (64), Expect = 0.063
Identities = 9/42 (21%), Positives = 19/42 (45%)
Query: 83 LYVSGLPKHMSQQELESLFSPYGRIITSRILCDNLATENGKY 124
++V G+ + + L F YG+I I+ D + + +
Sbjct: 5 IFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGF 46
>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 89
Score = 31.6 bits (71), Expect = 0.009
Identities = 7/35 (20%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 83 LYVSGLPK-HMSQQELESLFSPYGRIITSRILCDN 116
+++ + + +L L P+G I IL
Sbjct: 11 VHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI 45
Score = 28.5 bits (63), Expect = 0.11
Identities = 8/41 (19%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 38 YGFVNYHRPEDAEKAIN--TLNGLRLQNKTIKVSYARPSSE 76
F+ EDA+ A++ T + K ++V ++
Sbjct: 47 EAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKYKR 87
>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 81
Score = 30.3 bits (68), Expect = 0.017
Identities = 7/50 (14%), Positives = 16/50 (32%), Gaps = 2/50 (4%)
Query: 27 VFLISTAQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKT-IKVSYARPSS 75
+ + + + + Y A KA++ +G I V +
Sbjct: 30 ILKHVMSNTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPCIDKN 78
>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 112
Score = 30.2 bits (67), Expect = 0.037
Identities = 8/36 (22%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 38 YGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARP 73
GFV + D + A+ + + N+ I+V
Sbjct: 62 EGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPITK 96
>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 29.7 bits (66), Expect = 0.042
Identities = 8/43 (18%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 38 YGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKG 80
V + EDA A+ + +Q++ +++ + S G
Sbjct: 57 EADVEFATHEDAVAAMA-KDKANMQHRYVELFLNSTAGTSGSG 98
Score = 26.2 bits (57), Expect = 0.80
Identities = 9/40 (22%), Positives = 19/40 (47%)
Query: 73 PSSESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRI 112
S +S G +++ GLP ++ ++ + FSP +
Sbjct: 8 SSFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIE 47
>d1x4fa1 d.58.7.1 (A:8-106) Matrin 3 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 99
Score = 29.6 bits (65), Expect = 0.056
Identities = 8/53 (15%), Positives = 17/53 (32%), Gaps = 2/53 (3%)
Query: 26 CVFLISTAQSLGYGFVNYHRPEDAEKAINTLN--GLRLQNKTIKVSYARPSSE 76
+ + F+ EDA ++ L Q + +KV + +
Sbjct: 45 KIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEKYKK 97
>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 85
Score = 28.5 bits (63), Expect = 0.081
Identities = 5/41 (12%), Positives = 18/41 (43%)
Query: 76 ESIKGANLYVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
+K ++Y+ G P + +++ G+++ ++
Sbjct: 2 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL 42
>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 75
Score = 26.7 bits (58), Expect = 0.36
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 82 NLYVSGLPKHMSQQELESLFSPYGRIITSRI 112
+ V LPK +Q ++ F G II +
Sbjct: 2 TVLVKNLPKSYNQNKVYKYFKHCGPIIHVDV 32
>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 113
Score = 27.1 bits (59), Expect = 0.46
Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
Query: 72 RPSSESIKGANL-YVSGLPKHMSQQELESLFSPYGRIITSRILCDN 116
S E G L + L +++L LFS +G I +
Sbjct: 2 HGSLEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA 47
>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium
pasteurianum [TaxId: 1501]}
Length = 269
Score = 27.2 bits (59), Expect = 0.68
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 89 PKHMSQQELESLFSPYG 105
PK M+Q+ LE + YG
Sbjct: 253 PKPMTQERLEEILMQYG 269
>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1,
Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 75
Score = 25.3 bits (54), Expect = 1.3
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 83 LYVSGLPKHMSQQELESLFSPY 104
+ + GLP ++ QE+ L S Y
Sbjct: 1 ILIRGLPGDVTNQEVHDLLSDY 22
>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter
vinelandii [TaxId: 354]}
Length = 289
Score = 26.4 bits (57), Expect = 1.4
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 89 PKHMSQQELESLFSPYG 105
P ++ ELE L +G
Sbjct: 256 PNPITMDELEELLMEFG 272
>d1yf2a1 d.287.1.2 (A:1-220) Bipartite methylase S protein MJ0130
{Methanocaldococcus jannaschii [TaxId: 2190]}
Length = 220
Score = 25.8 bits (55), Expect = 1.5
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 4 QTLLNKLFTYEKVHLGFSDAE 24
+ L++KL T H F +E
Sbjct: 200 KGLMHKLLTKGIGHSRFKKSE 220
>d1qmha1 c.47.2.1 (A:185-279) RNA 3'-terminal phosphate cyclase,
RPTC, insert domain {Escherichia coli [TaxId: 562]}
Length = 95
Score = 24.4 bits (53), Expect = 3.4
Identities = 5/17 (29%), Positives = 15/17 (88%)
Query: 84 YVSGLPKHMSQQELESL 100
++G+P+H++++E+ +L
Sbjct: 13 LLAGVPRHVAEREIATL 29
>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 229
Score = 24.5 bits (52), Expect = 4.6
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 86 SGLPKHMSQQELESLFSPYGRI 107
G P ++ E+E LF I
Sbjct: 177 PGPPFYVPHAEIERLFGKICNI 198
>d1whva_ d.58.7.1 (A:) Poly(A)-specific ribonuclease PARN {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 100
Score = 23.7 bits (51), Expect = 5.2
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 84 YVSGLPKHMSQQELESLFSPYGRIITSRI 112
PK +L LFS +G I S I
Sbjct: 19 LHVTFPKEWKTSDLYQLFSAFGNIQISWI 47
>d2dgxa1 d.58.7.1 (A:563-635) Limkain-b1, LKAP {Human (Homo
sapiens) [TaxId: 9606]}
Length = 73
Score = 22.8 bits (49), Expect = 7.7
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 46 PEDAEKAINTLNGLRLQNKTIKVSYA 71
+DA A+N+L+ ++ +K I VS A
Sbjct: 45 LQDAIGAVNSLHRYKIGSKKILVSLA 70
>d2obba1 c.108.1.25 (A:1-122) Hypothetical protein BT0820
{Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 122
Score = 23.3 bits (50), Expect = 9.8
Identities = 9/75 (12%), Positives = 23/75 (30%), Gaps = 2/75 (2%)
Query: 42 NYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSESIKGAN-LYVSGLPKHMSQQELESL 100
E+ A+ TL L+ + + + R + GL + + +
Sbjct: 16 YPRIGEEIPFAVETLKLLQQEKHRLILWSVREGELLDEAIEWCRARGLEFYAANK-DYPE 74
Query: 101 FSPYGRIITSRILCD 115
+ + ++ D
Sbjct: 75 EERDHQGFSRKLKAD 89
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.136 0.387
Gapped
Lambda K H
0.267 0.0463 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 479,604
Number of extensions: 19832
Number of successful extensions: 222
Number of sequences better than 10.0: 1
Number of HSP's gapped: 205
Number of HSP's successfully gapped: 163
Length of query: 136
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 60
Effective length of database: 1,364,116
Effective search space: 81846960
Effective search space used: 81846960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (22.9 bits)