BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6355
(83 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q61701|ELAV4_MOUSE ELAV-like protein 4 OS=Mus musculus GN=Elavl4 PE=1 SV=1
Length = 385
Score = 77.0 bits (188), Expect = 3e-14, Method: Composition-based stats.
Identities = 45/82 (54%), Positives = 56/82 (68%), Gaps = 9/82 (10%)
Query: 5 TDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPS--SSNKVIAPLAAY 62
T R +GFIRFD+RIEAE AI+ LNG P G+ EPITVKFAN+PS SS +++ L Y
Sbjct: 174 TGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQL--Y 231
Query: 63 LTPQAAAARRFGGPIHH-AGRF 83
+P RR+ GP+HH A RF
Sbjct: 232 QSPN----RRYPGPLHHQAQRF 249
>sp|P26378|ELAV4_HUMAN ELAV-like protein 4 OS=Homo sapiens GN=ELAVL4 PE=1 SV=2
Length = 380
Score = 76.6 bits (187), Expect = 4e-14, Method: Composition-based stats.
Identities = 45/82 (54%), Positives = 56/82 (68%), Gaps = 9/82 (10%)
Query: 5 TDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPS--SSNKVIAPLAAY 62
T R +GFIRFD+RIEAE AI+ LNG P G+ EPITVKFAN+PS SS +++ L Y
Sbjct: 169 TGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQL--Y 226
Query: 63 LTPQAAAARRFGGPIHH-AGRF 83
+P RR+ GP+HH A RF
Sbjct: 227 QSPN----RRYPGPLHHQAQRF 244
>sp|O09032|ELAV4_RAT ELAV-like protein 4 OS=Rattus norvegicus GN=Elavl4 PE=1 SV=1
Length = 373
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/82 (54%), Positives = 56/82 (68%), Gaps = 9/82 (10%)
Query: 5 TDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPS--SSNKVIAPLAAY 62
T R +GFIRFD+RIEAE AI+ LNG P G+ EPITVKFAN+PS SS +++ L Y
Sbjct: 162 TGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQL--Y 219
Query: 63 LTPQAAAARRFGGPIHH-AGRF 83
+P RR+ GP+HH A RF
Sbjct: 220 QSPN----RRYPGPLHHQAQRF 237
>sp|A4QNI8|ELAV4_XENTR ELAV-like protein 4 OS=Xenopus tropicalis GN=elavl4 PE=2 SV=1
Length = 400
Score = 76.6 bits (187), Expect = 4e-14, Method: Composition-based stats.
Identities = 42/80 (52%), Positives = 50/80 (62%), Gaps = 5/80 (6%)
Query: 5 TDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSSNKVIAPLAAYLT 64
T R +GFIRFD+RIEAE AI+ LNG P G+ EPITVKFAN+PS Y +
Sbjct: 203 TGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAAEPITVKFANNPSQKTSQALLSQLYQS 262
Query: 65 PQAAAARRFGGPIHH-AGRF 83
P RR+ GP+HH A RF
Sbjct: 263 PN----RRYPGPLHHQAQRF 278
>sp|Q7SZT7|ELAV4_XENLA ELAV-like protein 4 OS=Xenopus laevis GN=elavl4 PE=2 SV=1
Length = 400
Score = 76.6 bits (187), Expect = 4e-14, Method: Composition-based stats.
Identities = 42/80 (52%), Positives = 50/80 (62%), Gaps = 5/80 (6%)
Query: 5 TDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSSNKVIAPLAAYLT 64
T R +GFIRFD+RIEAE AI+ LNG P G+ EPITVKFAN+PS Y +
Sbjct: 203 TGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAAEPITVKFANNPSQKTSQALLSQLYQS 262
Query: 65 PQAAAARRFGGPIHH-AGRF 83
P RR+ GP+HH A RF
Sbjct: 263 PN----RRYPGPLHHQAQRF 278
>sp|Q14576|ELAV3_HUMAN ELAV-like protein 3 OS=Homo sapiens GN=ELAVL3 PE=1 SV=3
Length = 367
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 41/75 (54%), Positives = 51/75 (68%), Gaps = 4/75 (5%)
Query: 5 TDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSSNKVIAPLAAYLT 64
T R +GFIRFD+RIEAE AI+ LNG P G+ EPITVKFAN+P S K L +L
Sbjct: 162 TGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNP--SQKTGQALLTHL- 218
Query: 65 PQAAAARRFGGPIHH 79
++ARR+ GP+HH
Sbjct: 219 -YQSSARRYAGPLHH 232
>sp|Q60900|ELAV3_MOUSE ELAV-like protein 3 OS=Mus musculus GN=Elavl3 PE=1 SV=1
Length = 367
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 41/75 (54%), Positives = 51/75 (68%), Gaps = 4/75 (5%)
Query: 5 TDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSSNKVIAPLAAYLT 64
T R +GFIRFD+RIEAE AI+ LNG P G+ EPITVKFAN+P S K L +L
Sbjct: 162 TGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNP--SQKTGQALLTHL- 218
Query: 65 PQAAAARRFGGPIHH 79
++ARR+ GP+HH
Sbjct: 219 -YQSSARRYAGPLHH 232
>sp|Q91584|ELAV3_XENLA ELAV-like protein 3 OS=Xenopus laevis GN=elavl3 PE=2 SV=1
Length = 348
Score = 76.3 bits (186), Expect = 5e-14, Method: Composition-based stats.
Identities = 40/75 (53%), Positives = 48/75 (64%), Gaps = 4/75 (5%)
Query: 5 TDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSSNKVIAPLAAYLT 64
T R +GFIRFD+RIEAE AI+ LNG P G++EPITVKFAN+PS Y T
Sbjct: 157 TGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGASEPITVKFANNPSQKTGQALLTHLYQT 216
Query: 65 PQAAAARRFGGPIHH 79
ARR+ GP+HH
Sbjct: 217 ----TARRYTGPLHH 227
>sp|Q28FX0|ELAV3_XENTR ELAV-like protein 3 OS=Xenopus tropicalis GN=elavl3 PE=2 SV=1
Length = 343
Score = 75.5 bits (184), Expect = 8e-14, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 47/71 (66%), Gaps = 4/71 (5%)
Query: 9 RYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSSNKVIAPLAAYLTPQAA 68
R +GFIRFD+RIEAE AI+ LNG P G++EPITVKFAN+PS Y T
Sbjct: 163 RGVGFIRFDKRIEAEEAIKGLNGQKPLGASEPITVKFANNPSQKTGQALLTHLYQT---- 218
Query: 69 AARRFGGPIHH 79
ARR+ GP+HH
Sbjct: 219 TARRYTGPLHH 229
>sp|Q15717|ELAV1_HUMAN ELAV-like protein 1 OS=Homo sapiens GN=ELAVL1 PE=1 SV=2
Length = 326
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/80 (52%), Positives = 50/80 (62%), Gaps = 5/80 (6%)
Query: 5 TDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSSNKVIAPLAAYLT 64
T R + FIRFD+R EAE AI NG P GS+EPITVKFA +P+ + V Y +
Sbjct: 143 TGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFAANPNQNKNVALLSQLYHS 202
Query: 65 PQAAAARRFGGPIHH-AGRF 83
P ARRFGGP+HH A RF
Sbjct: 203 P----ARRFGGPVHHQAQRF 218
>sp|P23241|ELAV_DROVI Protein elav OS=Drosophila virilis GN=elav PE=3 SV=1
Length = 519
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/69 (55%), Positives = 48/69 (69%), Gaps = 3/69 (4%)
Query: 11 LGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSSNKVIAP-LAAYLTPQAAA 69
+GFIRFD+R EA RAI LNGT P +PI VKF+N+P S++K+I P L A+L PQ
Sbjct: 328 VGFIRFDKREEATRAIIALNGTTPSSCTDPIVVKFSNTPGSTSKIIQPQLPAFLNPQ--L 385
Query: 70 ARRFGGPIH 78
RR GG +H
Sbjct: 386 VRRIGGAMH 394
>sp|P16914|ELAV_DROME Protein elav OS=Drosophila melanogaster GN=elav PE=2 SV=1
Length = 483
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 49/72 (68%), Gaps = 3/72 (4%)
Query: 8 CRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSSNKVIAP-LAAYLTPQ 66
+ +GFIRFD+R EA RAI LNGT P +PI VKF+N+P S++K+I P L A+L PQ
Sbjct: 289 TKGVGFIRFDKREEATRAIIALNGTTPSSCTDPIVVKFSNTPGSTSKIIQPQLPAFLNPQ 348
Query: 67 AAAARRFGGPIH 78
RR GG +H
Sbjct: 349 --LVRRIGGAMH 358
>sp|P70372|ELAV1_MOUSE ELAV-like protein 1 OS=Mus musculus GN=Elavl1 PE=1 SV=2
Length = 326
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/81 (55%), Positives = 54/81 (66%), Gaps = 7/81 (8%)
Query: 5 TDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSSNKVIAPLAA-YL 63
T R + FIRFD+R EAE AI NG P GS+EPITVKFA +P + NK +A L+ Y
Sbjct: 143 TGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFAANP-NQNKNMALLSQLYH 201
Query: 64 TPQAAAARRFGGPIHH-AGRF 83
+P ARRFGGP+HH A RF
Sbjct: 202 SP----ARRFGGPVHHQAQRF 218
>sp|Q1JQ73|ELV1A_XENLA ELAV-like protein 1-A OS=Xenopus laevis GN=elavl1-a PE=1 SV=1
Length = 337
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 43/80 (53%), Positives = 52/80 (65%), Gaps = 5/80 (6%)
Query: 5 TDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSSNKVIAPLAAYLT 64
T R + FIRFD+R EAE AI NG P GS+EPITVKFA +P + NK +A L+
Sbjct: 154 TGLSRGVAFIRFDKRSEAEEAIASFNGHKPPGSSEPITVKFAANP-NQNKNVALLSQIC- 211
Query: 65 PQAAAARRFGGPIHH-AGRF 83
+ ARRFGGP+HH A RF
Sbjct: 212 --HSPARRFGGPVHHQAQRF 229
>sp|Q6GLB5|ELAV1_XENTR ELAV-like protein 1 OS=Xenopus tropicalis GN=elavl1 PE=2 SV=1
Length = 326
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 43/80 (53%), Positives = 52/80 (65%), Gaps = 5/80 (6%)
Query: 5 TDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSSNKVIAPLAAYLT 64
T R + FIRFD+R EAE AI NG P GS+EPITVKFA +P + NK +A L+
Sbjct: 143 TGLSRGVAFIRFDKRSEAEEAIASFNGHKPPGSSEPITVKFAANP-NQNKNMALLSQLC- 200
Query: 65 PQAAAARRFGGPIHH-AGRF 83
+ ARRFGGP+HH A RF
Sbjct: 201 --HSPARRFGGPVHHQAQRF 218
>sp|Q5U259|ELV1B_XENLA ELAV-like protein 1-B OS=Xenopus laevis GN=elavl1-b PE=1 SV=1
Length = 326
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/80 (53%), Positives = 52/80 (65%), Gaps = 5/80 (6%)
Query: 5 TDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSSNKVIAPLAAYLT 64
T R + FIRFD+R EAE AI NG P GS+EPITVKFA +P+ S K +A L+
Sbjct: 143 TGLSRGVAFIRFDKRSEAEEAIASFNGHKPPGSSEPITVKFAANPNQS-KNMALLSQIC- 200
Query: 65 PQAAAARRFGGPIHH-AGRF 83
+ ARRFGGP+HH A RF
Sbjct: 201 --HSPARRFGGPVHHQAQRF 218
>sp|Q60899|ELAV2_MOUSE ELAV-like protein 2 OS=Mus musculus GN=Elavl2 PE=2 SV=1
Length = 360
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/80 (50%), Positives = 48/80 (60%), Gaps = 5/80 (6%)
Query: 5 TDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSSNKVIAPLAAYLT 64
T R +GFIRFD+RIEAE AI+ LNG P G+ EPITVKFAN+PS Y +
Sbjct: 162 TGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQS 221
Query: 65 PQAAAARRFGGPI-HHAGRF 83
P RR+ GP+ A RF
Sbjct: 222 PN----RRYPGPLAQQAQRF 237
>sp|Q8CH84|ELAV2_RAT ELAV-like protein 2 OS=Rattus norvegicus GN=Elavl2 PE=2 SV=1
Length = 359
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/80 (50%), Positives = 48/80 (60%), Gaps = 5/80 (6%)
Query: 5 TDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSSNKVIAPLAAYLT 64
T R +GFIRFD+RIEAE AI+ LNG P G+ EPITVKFAN+PS Y +
Sbjct: 162 TGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQS 221
Query: 65 PQAAAARRFGGPI-HHAGRF 83
P RR+ GP+ A RF
Sbjct: 222 PN----RRYPGPLAQQAQRF 237
>sp|Q5R9Z6|ELAV2_PONAB ELAV-like protein 2 OS=Pongo abelii GN=ELAVL2 PE=2 SV=1
Length = 359
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/80 (50%), Positives = 48/80 (60%), Gaps = 5/80 (6%)
Query: 5 TDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSSNKVIAPLAAYLT 64
T R +GFIRFD+RIEAE AI+ LNG P G+ EPITVKFAN+PS Y +
Sbjct: 162 TGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQS 221
Query: 65 PQAAAARRFGGPI-HHAGRF 83
P RR+ GP+ A RF
Sbjct: 222 PN----RRYPGPLAQQAQRF 237
>sp|Q12926|ELAV2_HUMAN ELAV-like protein 2 OS=Homo sapiens GN=ELAVL2 PE=1 SV=2
Length = 359
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/80 (50%), Positives = 48/80 (60%), Gaps = 5/80 (6%)
Query: 5 TDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSSNKVIAPLAAYLT 64
T R +GFIRFD+RIEAE AI+ LNG P G+ EPITVKFAN+PS Y +
Sbjct: 162 TGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQS 221
Query: 65 PQAAAARRFGGPI-HHAGRF 83
P RR+ GP+ A RF
Sbjct: 222 PN----RRYPGPLAQQAQRF 237
>sp|Q91903|ELAV2_XENLA ELAV-like protein 2 OS=Xenopus laevis GN=elavl2 PE=1 SV=2
Length = 389
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 40/80 (50%), Positives = 48/80 (60%), Gaps = 5/80 (6%)
Query: 5 TDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSSNKVIAPLAAYLT 64
T R +GFIRFD+RIEAE AI+ LNG P G+ EPITVKFAN+PS Y +
Sbjct: 190 TGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKVNHTILSQLYQS 249
Query: 65 PQAAAARRFGGPI-HHAGRF 83
P RR+ GP+ A RF
Sbjct: 250 PN----RRYPGPLAQQAQRF 265
>sp|Q28GD4|ELAV2_XENTR ELAV-like protein 2 OS=Xenopus tropicalis GN=elavl2 PE=2 SV=2
Length = 375
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 40/80 (50%), Positives = 48/80 (60%), Gaps = 5/80 (6%)
Query: 5 TDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSSNKVIAPLAAYLT 64
T R +GFIRFD+RIEAE AI+ LNG P G+ EPITVKFAN+PS Y +
Sbjct: 190 TGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKVNHTILSQLYQS 249
Query: 65 PQAAAARRFGGPI-HHAGRF 83
P RR+ GP+ A RF
Sbjct: 250 PN----RRYPGPLAQQAQRF 265
>sp|O17310|SXL_MUSDO Sex-lethal homolog OS=Musca domestica GN=SXL PE=2 SV=1
Length = 324
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 29/38 (76%)
Query: 9 RYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFA 46
R + F+RF++R EA+ AI LN IP+G+++P+TV+ A
Sbjct: 229 RGVAFVRFNKREEAQEAISALNNVIPEGASQPLTVRLA 266
>sp|O97018|SXL_CHRRU Sex-lethal homolog OS=Chrysomya rufifacies GN=SXL PE=2 SV=2
Length = 307
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 29/38 (76%)
Query: 9 RYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFA 46
R + F+RF++R EA+ AI LN IP+G+++P+TV+ A
Sbjct: 212 RGVAFVRFNKREEAQEAISALNNVIPEGASQPLTVRLA 249
>sp|O61374|SXL_CERCA Sex-lethal homolog OS=Ceratitis capitata GN=SXL PE=2 SV=2
Length = 348
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 29/38 (76%)
Query: 9 RYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFA 46
R + F+RF++R EA+ AI LN IP+G+++P+TV+ A
Sbjct: 237 RGVAFVRFNKREEAQEAISALNNVIPEGASQPLTVRLA 274
>sp|O01671|SXL_MEGSC Sex-lethal homolog OS=Megaselia scalaris GN=SXL PE=2 SV=3
Length = 321
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 20/44 (45%), Positives = 28/44 (63%)
Query: 9 RYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSS 52
R + FIRF++R EA+ AI LN IP+G +P+TV+ A S
Sbjct: 205 RGVAFIRFNKREEAQEAISALNNVIPEGGTQPLTVRVAEEHGKS 248
>sp|Q24668|SXL_DROSU Protein sex-lethal OS=Drosophila subobscura GN=Sxl PE=2 SV=2
Length = 354
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 28/38 (73%)
Query: 9 RYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFA 46
R + F+R+++R EA+ AI LN IP+G ++P++V+ A
Sbjct: 254 RGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 291
>sp|P19339|SXL_DROME Protein sex-lethal OS=Drosophila melanogaster GN=Sxl PE=1 SV=1
Length = 354
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 28/38 (73%)
Query: 9 RYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFA 46
R + F+R+++R EA+ AI LN IP+G ++P++V+ A
Sbjct: 252 RGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 289
>sp|P32831|NGR1_YEAST Negative growth regulatory protein NGR1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=NGR1 PE=1 SV=2
Length = 672
Score = 35.8 bits (81), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 29/42 (69%), Gaps = 3/42 (7%)
Query: 12 GFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSSN 53
GF++F++RI+AE +IQ L G I GS PI + + PSSSN
Sbjct: 398 GFVKFEKRIDAEASIQGLQGFIVGGS--PIRLSWG-RPSSSN 436
>sp|B4KX02|SHEP_DROMO Protein alan shepard OS=Drosophila mojavensis GN=shep PE=3 SV=1
Length = 592
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 11 LGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFAN 47
+GF R + R + E+ IQ NG G+ +P+ VKFA+
Sbjct: 361 VGFARMESREKCEQIIQMFNGNTITGAKDPLLVKFAD 397
>sp|B4IX08|SHEP_DROGR Protein alan shepard OS=Drosophila grimshawi GN=shep PE=3 SV=1
Length = 609
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 11 LGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFAN 47
+GF R + R + E+ IQ NG G+ +P+ VKFA+
Sbjct: 378 VGFARMESREKCEQIIQMFNGNTIPGAKDPLLVKFAD 414
>sp|B3NGA1|SHEP_DROER Protein alan shepard OS=Drosophila erecta GN=shep PE=3 SV=1
Length = 582
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 11 LGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFAN 47
+GF R + R + E+ IQ NG G+ +P+ VKFA+
Sbjct: 352 VGFARMESREKCEQIIQMFNGNTIPGAKDPLLVKFAD 388
>sp|B4PIS2|SHEP_DROYA Protein alan shepard OS=Drosophila yakuba GN=shep PE=3 SV=1
Length = 582
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 11 LGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFAN 47
+GF R + R + E+ IQ NG G+ +P+ VKFA+
Sbjct: 352 VGFARMESREKCEQIIQMFNGNTIPGAKDPLLVKFAD 388
>sp|B4LFQ9|SHEP_DROVI Protein alan shepard OS=Drosophila virilis GN=shep PE=3 SV=2
Length = 595
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 11 LGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFAN 47
+GF R + R + E+ IQ NG G+ +P+ VKFA+
Sbjct: 364 VGFARMESREKCEQIIQMFNGNTIPGAKDPLLVKFAD 400
>sp|B4MM23|SHEP_DROWI Protein alan shepard OS=Drosophila willistoni GN=shep PE=3 SV=2
Length = 581
Score = 33.5 bits (75), Expect = 0.37, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 11 LGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFAN-SPSSSNKVIAP 58
+GF R + R + E+ IQ NG G+ +P+ VKFA+ P N P
Sbjct: 358 VGFARMESREKCEQIIQMFNGNTIPGAKDPLLVKFADGGPKKKNLFKTP 406
>sp|B4HUE4|SHEP_DROSE Protein alan shepard OS=Drosophila sechellia GN=shep PE=3 SV=1
Length = 579
Score = 33.5 bits (75), Expect = 0.37, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 11 LGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFAN-SPSSSNKVIAP 58
+GF R + R + E+ IQ NG G+ +P+ VKFA+ P N P
Sbjct: 352 VGFARMESREKCEQIIQMFNGNTIPGAKDPLLVKFADGGPKKKNLFKTP 400
>sp|Q8MSV2|SHEP_DROME Protein alan shepard OS=Drosophila melanogaster GN=shep PE=1 SV=1
Length = 578
Score = 33.5 bits (75), Expect = 0.37, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 11 LGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFAN-SPSSSNKVIAP 58
+GF R + R + E+ IQ NG G+ +P+ VKFA+ P N P
Sbjct: 352 VGFARMESREKCEQIIQMFNGNTIPGAKDPLLVKFADGGPKKKNLFKTP 400
>sp|B4QRJ0|SHEP_DROSI Protein alan shepard OS=Drosophila simulans GN=shep PE=3 SV=1
Length = 576
Score = 33.5 bits (75), Expect = 0.38, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 11 LGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFAN-SPSSSNKVIAP 58
+GF R + R + E+ IQ NG G+ +P+ VKFA+ P N P
Sbjct: 350 VGFARMESREKCEQIIQMFNGNTIPGAKDPLLVKFADGGPKKKNLFKTP 398
>sp|Q9U1N0|HRP65_CHITE Hrp65 protein OS=Chironomus tentans GN=HRP65 PE=1 SV=1
Length = 535
Score = 33.5 bits (75), Expect = 0.40, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFA-NSPSSSNKVIAPLA 60
+ F + + F++ D R AERA ++L+G + K N+PI ++FA N+ + K + P
Sbjct: 141 EAFINAEKNFAFLKIDYRANAERAKKDLDGRMRK--NKPIRIRFAPNATTIRVKNLTPFV 198
Query: 61 A 61
+
Sbjct: 199 S 199
>sp|B3M3R5|SHEP_DROAN Protein alan shepard OS=Drosophila ananassae GN=shep PE=3 SV=2
Length = 597
Score = 33.5 bits (75), Expect = 0.44, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 11 LGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFAN-SPSSSNKVIAP 58
+GF R + R + E+ IQ NG G +P+ VKFA+ P N P
Sbjct: 366 VGFARMESREKCEQIIQMFNGNTIPGGKDPLLVKFADGGPKKKNLFKTP 414
>sp|Q1JPY8|PSPC1_DANRE Paraspeckle component 1 OS=Danio rerio GN=pspc1 PE=2 SV=1
Length = 512
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 12/63 (19%)
Query: 4 FTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFAN----------SPSSSN 53
F + R GFIR + R AE A EL+GT+ N PI ++FA SP SN
Sbjct: 106 FINRDRGFGFIRLETRTLAEIAKAELDGTVL--GNRPIRIRFATHGAALTVRNLSPVVSN 163
Query: 54 KVI 56
+++
Sbjct: 164 ELL 166
>sp|Q1LZD9|PSPC1_BOVIN Paraspeckle component 1 OS=Bos taurus GN=PSPC1 PE=2 SV=1
Length = 520
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 12/63 (19%)
Query: 4 FTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFAN----------SPSSSN 53
F + R GFIR + R AE A EL+GTI K + P+ ++FA SP SN
Sbjct: 109 FINRDRGFGFIRLESRTLAEIAKAELDGTILK--SRPLRIRFATHGAALTVKNLSPVVSN 166
Query: 54 KVI 56
+++
Sbjct: 167 ELL 169
>sp|Q7ZT82|RFX1L_DANRE RNA binding protein fox-1 homolog 1-like OS=Danio rerio GN=rbfox1l
PE=1 SV=1
Length = 382
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 11 LGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSSNKVIAPL 59
GF+ F+ +EA+RA ++LNGTI +G I V A + + K PL
Sbjct: 188 FGFVTFESAVEADRAREKLNGTIVEGRK--IEVNNATARVVTKKPQTPL 234
>sp|Q5ZK88|PSPC1_CHICK Paraspeckle component 1 OS=Gallus gallus GN=PSPC1 PE=2 SV=1
Length = 523
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 12/63 (19%)
Query: 4 FTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFAN----------SPSSSN 53
F + R GFIR + R AE A EL+GTI K + P+ ++FA SP SN
Sbjct: 111 FINRDRGFGFIRLESRTLAEIAKAELDGTILK--SRPLRIRFATHGAALTVKNLSPVVSN 168
Query: 54 KVI 56
+++
Sbjct: 169 ELL 171
>sp|Q8WXF1|PSPC1_HUMAN Paraspeckle component 1 OS=Homo sapiens GN=PSPC1 PE=1 SV=1
Length = 523
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 12/63 (19%)
Query: 4 FTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFAN----------SPSSSN 53
F + R GFIR + R AE A EL+GTI K + P+ ++FA SP SN
Sbjct: 112 FINRDRGFGFIRLESRTLAEIAKAELDGTILK--SRPLRIRFATHGAALTVKNLSPVVSN 169
Query: 54 KVI 56
+++
Sbjct: 170 ELL 172
>sp|Q8R326|PSPC1_MOUSE Paraspeckle component 1 OS=Mus musculus GN=Pspc1 PE=1 SV=1
Length = 523
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 12/63 (19%)
Query: 4 FTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFAN----------SPSSSN 53
F + R GFIR + R AE A EL+GTI K + P+ ++FA SP SN
Sbjct: 111 FINRDRGFGFIRLESRTLAEIAKAELDGTILK--SRPLRIRFATHGAALTVKNLSPVVSN 168
Query: 54 KVI 56
+++
Sbjct: 169 ELL 171
>sp|Q4KLH4|PSPC1_RAT Paraspeckle component 1 OS=Rattus norvegicus GN=Pspc1 PE=2 SV=1
Length = 522
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 12/63 (19%)
Query: 4 FTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFAN----------SPSSSN 53
F + R GFIR + R AE A EL+GTI K + P+ ++FA SP SN
Sbjct: 111 FINRDRGFGFIRLESRTLAEIAKAELDGTILK--SRPLRIRFATHGAALTVKNLSPVVSN 168
Query: 54 KVI 56
+++
Sbjct: 169 ELL 171
>sp|O04425|FCA_ARATH Flowering time control protein FCA OS=Arabidopsis thaliana GN=FCA
PE=1 SV=2
Length = 747
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 8 CRYLGFIRFDQRIEAERAIQELNGTIP-KGSNEPITVKFAN----SPSSSNKVIAPLA 60
R GF+++ + A AI LNGT +G N+P+ V+FA P S ++ P+
Sbjct: 250 SRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAEPKRPKPGESREMAPPVG 307
>sp|Q7TMK9|HNRPQ_MOUSE Heterogeneous nuclear ribonucleoprotein Q OS=Mus musculus
GN=Syncrip PE=1 SV=2
Length = 623
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 12 GFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSSNK 54
FI FD+R A +A++E+NG +G N I + FA P K
Sbjct: 374 AFIHFDERDGAVKAMEEMNGKDLEGEN--IEIVFAKPPDQKRK 414
>sp|O60506|HNRPQ_HUMAN Heterogeneous nuclear ribonucleoprotein Q OS=Homo sapiens
GN=SYNCRIP PE=1 SV=2
Length = 623
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 12 GFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSSNK 54
FI FD+R A +A++E+NG +G N I + FA P K
Sbjct: 374 AFIHFDERDGAVKAMEEMNGKDLEGEN--IEIVFAKPPDQKRK 414
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.137 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,795,265
Number of Sequences: 539616
Number of extensions: 1117495
Number of successful extensions: 3527
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 3369
Number of HSP's gapped (non-prelim): 180
length of query: 83
length of database: 191,569,459
effective HSP length: 54
effective length of query: 29
effective length of database: 162,430,195
effective search space: 4710475655
effective search space used: 4710475655
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)