Query psy6355
Match_columns 83
No_of_seqs 102 out of 1062
Neff 6.1
Searched_HMMs 46136
Date Sat Aug 17 00:19:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6355.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6355hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0145|consensus 99.7 1.8E-18 3.8E-23 127.8 6.2 79 1-83 161-240 (360)
2 KOG0144|consensus 99.1 9E-11 1.9E-15 91.3 5.1 49 4-52 160-209 (510)
3 KOG0144|consensus 99.1 1.3E-10 2.9E-15 90.3 4.6 53 1-53 68-121 (510)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.1 3.4E-10 7.3E-15 82.8 5.8 46 2-49 304-349 (352)
5 KOG0122|consensus 99.0 2.8E-10 6E-15 83.3 4.8 47 1-49 223-269 (270)
6 PLN03134 glycine-rich RNA-bind 99.0 5.9E-10 1.3E-14 74.9 5.6 47 1-49 68-114 (144)
7 smart00361 RRM_1 RNA recogniti 99.0 7.4E-10 1.6E-14 65.6 4.6 41 1-43 27-69 (70)
8 KOG0146|consensus 98.9 7E-10 1.5E-14 82.8 3.8 50 5-54 56-106 (371)
9 KOG0145|consensus 98.9 1.2E-09 2.6E-14 81.3 4.1 52 1-54 75-126 (360)
10 TIGR01659 sex-lethal sex-letha 98.9 3.4E-09 7.4E-14 80.0 6.4 50 2-51 228-277 (346)
11 KOG4207|consensus 98.8 1.8E-09 3.9E-14 77.9 3.0 44 2-47 48-91 (256)
12 KOG0117|consensus 98.8 5.6E-09 1.2E-13 81.5 5.1 47 1-47 117-164 (506)
13 TIGR01659 sex-lethal sex-letha 98.8 9E-09 2E-13 77.7 5.5 48 1-50 141-188 (346)
14 TIGR01661 ELAV_HUD_SF ELAV/HuD 98.8 3E-08 6.6E-13 72.5 8.0 51 2-52 124-174 (352)
15 KOG0148|consensus 98.7 1E-08 2.2E-13 76.3 4.2 47 1-49 96-142 (321)
16 PF13893 RRM_5: RNA recognitio 98.6 1.1E-07 2.3E-12 53.6 4.1 36 9-46 21-56 (56)
17 TIGR01628 PABP-1234 polyadenyl 98.5 8.8E-08 1.9E-12 74.8 4.6 46 4-51 321-366 (562)
18 KOG0111|consensus 98.5 8.4E-08 1.8E-12 70.1 3.6 50 1-52 44-93 (298)
19 TIGR01645 half-pint poly-U bin 98.5 2.1E-07 4.5E-12 75.1 6.1 47 2-50 239-285 (612)
20 TIGR01645 half-pint poly-U bin 98.5 1.2E-07 2.5E-12 76.6 4.3 45 1-47 141-185 (612)
21 KOG0108|consensus 98.5 1.7E-07 3.7E-12 73.0 5.0 50 1-52 52-101 (435)
22 TIGR01622 SF-CC1 splicing fact 98.5 2.1E-07 4.6E-12 70.5 5.3 45 2-48 221-265 (457)
23 KOG4208|consensus 98.5 1.6E-07 3.4E-12 67.3 4.2 46 2-49 85-130 (214)
24 KOG0113|consensus 98.5 2.6E-07 5.6E-12 69.4 5.4 52 2-58 136-187 (335)
25 TIGR01642 U2AF_lg U2 snRNP aux 98.5 3E-07 6.5E-12 70.5 5.9 46 2-49 330-375 (509)
26 KOG0130|consensus 98.5 1.3E-07 2.7E-12 64.8 3.3 46 1-48 106-151 (170)
27 smart00360 RRM RNA recognition 98.5 4.6E-07 1E-11 50.1 4.9 40 2-43 31-70 (71)
28 KOG0131|consensus 98.5 2.8E-07 6E-12 65.3 4.8 50 2-53 132-181 (203)
29 KOG0149|consensus 98.4 1.3E-07 2.9E-12 68.8 3.0 41 2-43 47-87 (247)
30 PF00076 RRM_1: RNA recognitio 98.4 2.9E-07 6.3E-12 52.3 3.1 33 4-36 34-66 (70)
31 KOG0146|consensus 98.4 1.5E-07 3.2E-12 70.4 2.3 49 1-51 319-367 (371)
32 COG0724 RNA-binding proteins ( 98.4 7.4E-07 1.6E-11 59.8 4.9 45 1-47 149-193 (306)
33 TIGR01628 PABP-1234 polyadenyl 98.4 6.9E-07 1.5E-11 69.8 5.2 46 1-48 34-79 (562)
34 TIGR01622 SF-CC1 splicing fact 98.3 1.2E-06 2.5E-11 66.6 4.8 46 1-49 123-168 (457)
35 TIGR01642 U2AF_lg U2 snRNP aux 98.3 1.6E-06 3.4E-11 66.5 5.2 44 3-48 458-501 (509)
36 KOG0226|consensus 98.3 6.1E-07 1.3E-11 66.3 2.7 42 1-44 224-265 (290)
37 smart00362 RRM_2 RNA recogniti 98.2 3.2E-06 6.9E-11 46.9 4.0 36 6-43 36-71 (72)
38 KOG0125|consensus 98.2 2.1E-06 4.6E-11 65.3 3.9 41 6-48 133-173 (376)
39 KOG0131|consensus 98.1 2.2E-06 4.8E-11 60.8 3.4 45 1-47 43-87 (203)
40 TIGR01648 hnRNP-R-Q heterogene 98.1 4.3E-06 9.2E-11 67.2 4.3 33 1-34 92-124 (578)
41 PF14259 RRM_6: RNA recognitio 98.0 6.5E-06 1.4E-10 47.5 3.4 34 2-36 33-66 (70)
42 KOG0126|consensus 98.0 8.3E-07 1.8E-11 63.2 -0.6 43 1-45 69-111 (219)
43 TIGR01648 hnRNP-R-Q heterogene 98.0 9.9E-06 2.2E-10 65.1 4.9 41 7-49 267-307 (578)
44 KOG0147|consensus 98.0 8.1E-06 1.8E-10 65.0 4.3 44 1-46 312-355 (549)
45 KOG0124|consensus 98.0 8.3E-06 1.8E-10 63.4 3.9 44 2-47 148-191 (544)
46 KOG0107|consensus 98.0 8.4E-06 1.8E-10 57.6 3.4 40 7-48 45-84 (195)
47 KOG0117|consensus 97.9 1.4E-05 3E-10 62.9 4.3 45 8-54 292-336 (506)
48 TIGR01649 hnRNP-L_PTB hnRNP-L/ 97.9 2.1E-05 4.5E-10 61.2 5.1 40 8-49 312-351 (481)
49 KOG0121|consensus 97.8 2.8E-05 6.2E-10 52.8 4.5 45 1-47 70-114 (153)
50 cd00590 RRM RRM (RNA recogniti 97.8 6.7E-05 1.5E-09 41.6 5.0 36 7-44 38-73 (74)
51 PLN03120 nucleic acid binding 97.8 5.3E-05 1.1E-09 55.9 5.3 39 7-48 41-79 (260)
52 TIGR01649 hnRNP-L_PTB hnRNP-L/ 97.8 5E-05 1.1E-09 59.0 5.4 40 9-48 134-173 (481)
53 KOG0148|consensus 97.7 5E-05 1.1E-09 56.9 4.6 40 8-49 199-238 (321)
54 KOG0110|consensus 97.7 6E-05 1.3E-09 61.7 5.0 39 7-47 558-596 (725)
55 KOG0110|consensus 97.7 5.9E-05 1.3E-09 61.7 4.8 42 5-48 5-46 (725)
56 KOG0127|consensus 97.7 6.1E-05 1.3E-09 60.7 4.5 43 4-49 154-196 (678)
57 PLN03213 repressor of silencin 97.7 5.8E-05 1.3E-09 60.6 4.3 42 3-48 44-87 (759)
58 PF04059 RRM_2: RNA recognitio 97.6 0.00011 2.5E-09 46.9 4.8 49 1-49 37-87 (97)
59 KOG4212|consensus 97.6 8.6E-05 1.9E-09 58.8 4.5 41 4-46 81-121 (608)
60 KOG0123|consensus 97.3 0.00036 7.8E-09 53.4 4.4 41 8-51 115-155 (369)
61 KOG1457|consensus 97.2 0.0011 2.4E-08 48.8 5.6 44 7-50 75-119 (284)
62 KOG0127|consensus 97.2 0.00042 9.2E-09 56.0 3.7 48 2-51 40-87 (678)
63 PLN03121 nucleic acid binding 97.2 0.00089 1.9E-08 49.1 5.0 39 6-47 41-79 (243)
64 KOG0123|consensus 97.1 0.0011 2.3E-08 50.9 4.9 40 8-49 36-75 (369)
65 KOG4206|consensus 97.0 0.0011 2.3E-08 48.1 4.3 45 5-51 48-92 (221)
66 KOG4209|consensus 96.9 0.0015 3.3E-08 47.3 4.2 42 1-45 135-176 (231)
67 KOG0114|consensus 96.8 0.0025 5.3E-08 42.1 4.5 43 6-50 54-96 (124)
68 KOG0105|consensus 96.8 0.00093 2E-08 48.1 2.7 41 8-50 44-84 (241)
69 KOG0120|consensus 96.7 0.00088 1.9E-08 53.4 2.2 50 1-52 323-372 (500)
70 KOG0109|consensus 96.5 0.0031 6.6E-08 47.8 3.6 40 7-48 110-149 (346)
71 KOG4212|consensus 96.4 0.0052 1.1E-07 49.0 4.7 38 5-46 571-608 (608)
72 KOG0533|consensus 96.1 0.016 3.4E-07 42.5 5.3 48 2-52 118-165 (243)
73 KOG0132|consensus 96.1 0.0093 2E-07 49.9 4.4 45 7-53 455-499 (894)
74 KOG0109|consensus 95.9 0.0053 1.2E-07 46.6 2.3 37 8-46 35-71 (346)
75 KOG2314|consensus 95.9 0.013 2.8E-07 47.8 4.4 41 2-44 99-139 (698)
76 PF11608 Limkain-b1: Limkain b 95.6 0.034 7.3E-07 35.3 4.7 42 7-50 37-78 (90)
77 KOG4205|consensus 95.6 0.0059 1.3E-07 46.1 1.5 49 1-52 40-88 (311)
78 KOG0106|consensus 95.6 0.005 1.1E-07 44.5 1.0 39 8-48 34-72 (216)
79 KOG1995|consensus 95.5 0.012 2.6E-07 45.2 2.7 47 1-49 108-154 (351)
80 KOG0415|consensus 95.0 0.023 4.9E-07 44.4 3.0 45 2-48 274-318 (479)
81 KOG0124|consensus 94.7 0.041 8.8E-07 43.3 3.7 43 2-46 245-287 (544)
82 KOG0147|consensus 94.3 0.024 5.1E-07 45.7 1.6 44 1-47 213-256 (549)
83 KOG1548|consensus 94.2 0.084 1.8E-06 40.8 4.4 39 7-47 312-350 (382)
84 KOG4661|consensus 94.1 0.068 1.5E-06 44.1 4.0 39 8-48 446-484 (940)
85 KOG0120|consensus 94.1 0.11 2.5E-06 41.6 5.0 42 6-49 451-492 (500)
86 KOG4205|consensus 93.6 0.03 6.5E-07 42.3 1.0 49 1-52 131-179 (311)
87 KOG0153|consensus 93.4 0.15 3.1E-06 39.5 4.4 38 9-48 264-302 (377)
88 KOG1456|consensus 92.4 0.2 4.3E-06 39.5 3.9 41 11-52 161-202 (494)
89 KOG0106|consensus 91.5 0.12 2.5E-06 37.4 1.7 36 8-45 132-167 (216)
90 KOG4454|consensus 91.3 0.34 7.3E-06 35.8 3.9 39 5-46 46-84 (267)
91 KOG2202|consensus 89.7 0.34 7.3E-06 36.0 2.8 37 9-47 110-146 (260)
92 KOG4660|consensus 88.9 0.28 6E-06 39.8 2.0 35 2-36 105-139 (549)
93 KOG4307|consensus 88.1 0.83 1.8E-05 38.6 4.2 39 4-44 904-942 (944)
94 KOG4660|consensus 87.8 0.96 2.1E-05 36.8 4.4 48 2-49 424-473 (549)
95 KOG2416|consensus 87.7 0.91 2E-05 37.6 4.2 41 9-49 481-522 (718)
96 KOG4849|consensus 87.5 1.1 2.4E-05 35.2 4.4 43 2-45 117-159 (498)
97 KOG0151|consensus 87.2 0.7 1.5E-05 38.9 3.3 38 7-46 217-254 (877)
98 COG5175 MOT2 Transcriptional r 85.4 1.2 2.7E-05 34.8 3.7 33 13-47 169-201 (480)
99 KOG4206|consensus 85.1 1.4 3.1E-05 32.1 3.7 38 9-47 183-220 (221)
100 PF11767 SET_assoc: Histone ly 83.4 1.4 3.1E-05 26.2 2.6 22 13-34 37-58 (66)
101 KOG1190|consensus 82.6 2.7 5.8E-05 33.6 4.5 38 10-49 336-373 (492)
102 KOG1996|consensus 82.0 1.6 3.5E-05 33.5 3.1 38 12-51 332-369 (378)
103 KOG4210|consensus 81.9 0.81 1.8E-05 34.0 1.4 45 2-49 220-264 (285)
104 KOG1548|consensus 81.8 2.2 4.7E-05 33.3 3.7 41 5-47 179-219 (382)
105 PF02714 DUF221: Domain of unk 81.5 3.1 6.8E-05 30.3 4.4 37 12-52 1-37 (325)
106 KOG4211|consensus 81.0 2.5 5.5E-05 34.1 3.9 42 3-47 43-84 (510)
107 PF03880 DbpA: DbpA RNA bindin 76.3 4.9 0.00011 23.7 3.4 33 11-46 42-74 (74)
108 KOG4211|consensus 75.2 3.9 8.5E-05 33.0 3.5 37 5-44 141-177 (510)
109 PF08777 RRM_3: RNA binding mo 73.8 3.8 8.2E-05 26.0 2.6 22 11-32 39-60 (105)
110 PF05172 Nup35_RRM: Nup53/35/4 73.6 3.6 7.8E-05 26.2 2.4 38 8-47 53-90 (100)
111 KOG2193|consensus 68.3 2.7 5.9E-05 33.8 1.2 39 9-49 37-76 (584)
112 PF14605 Nup35_RRM_2: Nup53/35 64.0 6.8 0.00015 21.9 2.0 19 8-26 35-53 (53)
113 PF08952 DUF1866: Domain of un 63.7 8.8 0.00019 26.3 2.9 37 10-49 71-107 (146)
114 KOG0116|consensus 63.7 8 0.00017 30.5 3.0 37 6-45 327-363 (419)
115 PF07576 BRAP2: BRCA1-associat 61.5 41 0.00089 21.7 5.7 28 7-34 52-79 (110)
116 KOG0112|consensus 61.3 5.9 0.00013 34.2 2.0 41 11-51 493-533 (975)
117 KOG1457|consensus 59.8 5.1 0.00011 29.8 1.2 25 10-34 249-273 (284)
118 KOG1190|consensus 57.3 14 0.00029 29.7 3.2 40 7-47 450-489 (492)
119 KOG4307|consensus 53.6 8.6 0.00019 32.8 1.7 28 8-36 39-66 (944)
120 KOG4285|consensus 53.6 14 0.00031 28.5 2.7 40 4-45 227-266 (350)
121 PF01071 GARS_A: Phosphoribosy 53.1 31 0.00067 24.4 4.3 41 4-44 45-86 (194)
122 KOG1456|consensus 52.7 23 0.0005 28.3 3.8 36 9-46 325-360 (494)
123 KOG1365|consensus 50.2 23 0.00049 28.4 3.4 25 4-28 201-225 (508)
124 KOG0128|consensus 48.9 8.2 0.00018 33.1 0.9 46 5-52 773-818 (881)
125 PF08206 OB_RNB: Ribonuclease 44.5 18 0.0004 20.3 1.7 12 7-18 6-17 (58)
126 KOG2068|consensus 44.1 7.3 0.00016 29.9 -0.1 35 12-48 128-162 (327)
127 KOG1365|consensus 41.5 15 0.00032 29.4 1.2 30 5-34 320-349 (508)
128 PRK14998 cold shock-like prote 41.0 16 0.00035 21.8 1.1 12 7-18 11-22 (73)
129 PRK09937 stationary phase/star 40.5 17 0.00037 21.7 1.2 12 7-18 11-22 (74)
130 PF04847 Calcipressin: Calcipr 40.2 20 0.00044 25.0 1.7 36 11-48 33-70 (184)
131 PF10309 DUF2414: Protein of u 40.1 32 0.00069 20.2 2.3 18 12-29 45-62 (62)
132 KOG1855|consensus 39.3 12 0.00026 30.0 0.5 25 9-33 286-310 (484)
133 TIGR02381 cspD cold shock doma 38.6 20 0.00042 20.9 1.2 12 7-18 11-22 (68)
134 PRK09507 cspE cold shock prote 38.3 19 0.00041 21.1 1.1 13 7-19 13-25 (69)
135 PF03467 Smg4_UPF3: Smg-4/UPF3 36.8 31 0.00068 23.7 2.2 38 11-48 57-97 (176)
136 PRK10943 cold shock-like prote 36.8 20 0.00044 21.0 1.1 12 7-18 13-24 (69)
137 PF00313 CSD: 'Cold-shock' DNA 35.9 31 0.00067 19.4 1.8 14 7-20 10-23 (66)
138 KOG3152|consensus 34.0 12 0.00026 28.1 -0.3 27 12-38 131-157 (278)
139 PRK15463 cold shock-like prote 33.6 23 0.00051 20.9 1.0 12 7-18 14-25 (70)
140 PRK10354 RNA chaperone/anti-te 33.0 24 0.00053 20.6 1.0 12 7-18 14-25 (70)
141 PRK09890 cold shock protein Cs 32.0 26 0.00056 20.6 1.0 12 7-18 14-25 (70)
142 KOG0128|consensus 31.9 21 0.00045 30.8 0.7 31 4-34 704-734 (881)
143 PF15023 DUF4523: Protein of u 30.9 1E+02 0.0022 21.5 3.9 35 9-46 125-159 (166)
144 PF14657 Integrase_AP2: AP2-li 30.8 43 0.00093 17.8 1.7 28 2-29 10-37 (46)
145 KOG0105|consensus 29.3 1E+02 0.0022 22.5 3.8 36 9-44 150-187 (241)
146 PRK15464 cold shock-like prote 29.1 34 0.00073 20.3 1.2 12 7-18 14-25 (70)
147 cd04458 CSP_CDS Cold-Shock Pro 28.5 35 0.00076 19.1 1.1 12 7-18 10-21 (65)
148 KOG1134|consensus 26.7 1.3E+02 0.0027 25.5 4.5 42 7-52 303-344 (728)
149 COG0150 PurM Phosphoribosylami 26.2 65 0.0014 25.0 2.5 25 8-32 298-322 (345)
150 PRK08559 nusG transcription an 21.9 1E+02 0.0022 20.6 2.5 26 8-33 45-70 (153)
151 KOG2318|consensus 21.3 1.5E+02 0.0032 24.9 3.8 37 10-46 269-305 (650)
152 PF03439 Spt5-NGN: Early trans 21.1 1.3E+02 0.0029 17.9 2.8 27 7-33 42-68 (84)
153 KOG4574|consensus 20.4 74 0.0016 27.9 2.0 36 11-48 336-373 (1007)
No 1
>KOG0145|consensus
Probab=99.75 E-value=1.8e-18 Score=127.84 Aligned_cols=79 Identities=54% Similarity=0.908 Sum_probs=72.2
Q ss_pred CCCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCCCcccccchhhhccchhhhhcccCCCCCCC
Q psy6355 1 MKGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSSNKVIAPLAAYLTPQAAAARRFGGPIHHA 80 (83)
Q Consensus 1 ~Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (83)
.|..||.|||+|||+|+.++||++||..|||+++.|++.||.|+||+.+++++......+++.++ .+|++|||||+
T Consensus 161 ~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannPsq~t~~a~ls~ly~sp----~rr~~Gp~hh~ 236 (360)
T KOG0145|consen 161 VDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNPSQKTNQALLSQLYQSP----ARRYGGPMHHQ 236 (360)
T ss_pred hhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCcccccchhhhHHhhcCc----cccCCCcccch
Confidence 37889999999999999999999999999999999999999999999998887666777888887 69999999999
Q ss_pred -CCC
Q psy6355 81 -GRF 83 (83)
Q Consensus 81 -~~~ 83 (83)
.||
T Consensus 237 ~~r~ 240 (360)
T KOG0145|consen 237 AQRF 240 (360)
T ss_pred hhhh
Confidence 776
No 2
>KOG0144|consensus
Probab=99.11 E-value=9e-11 Score=91.26 Aligned_cols=49 Identities=33% Similarity=0.531 Sum_probs=46.1
Q ss_pred CCCCccceEEEEeCCHHHHHHHHHHhCCCC-CCCCCcceEEEecCCCCCC
Q psy6355 4 FTDFCRYLGFIRFDQRIEAERAIQELNGTI-PKGSNEPITVKFANSPSSS 52 (83)
Q Consensus 4 ~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~-~~G~~~~l~V~fA~~~~~~ 52 (83)
..|.||||+||.|..+|.|..||+.|||.. ++|++.||.|+||++.+.|
T Consensus 160 ~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk 209 (510)
T KOG0144|consen 160 PDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKDK 209 (510)
T ss_pred ccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccCCCc
Confidence 368999999999999999999999999996 8999999999999998777
No 3
>KOG0144|consensus
Probab=99.08 E-value=1.3e-10 Score=90.33 Aligned_cols=53 Identities=25% Similarity=0.352 Sum_probs=49.7
Q ss_pred CCCCCCCccceEEEEeCCHHHHHHHHHHhCCCC-CCCCCcceEEEecCCCCCCc
Q psy6355 1 MKGFTDFCRYLGFIRFDQRIEAERAIQELNGTI-PKGSNEPITVKFANSPSSSN 53 (83)
Q Consensus 1 ~Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~-~~G~~~~l~V~fA~~~~~~~ 53 (83)
.||.||.|+|||||.|.++++|.+||..||..+ ++|...||.|+||+.+++++
T Consensus 68 kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~Ad~E~er~ 121 (510)
T KOG0144|consen 68 KDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKYADGERERI 121 (510)
T ss_pred cccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecccchhhhcc
Confidence 499999999999999999999999999999987 79999999999999888873
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.05 E-value=3.4e-10 Score=82.85 Aligned_cols=46 Identities=28% Similarity=0.363 Sum_probs=42.5
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCC
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSP 49 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~ 49 (83)
|+.||.|||||||.|.+.++|.+||+.|||..+.| ++|.|.|+...
T Consensus 304 d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~g--r~i~V~~~~~~ 349 (352)
T TIGR01661 304 DLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGN--RVLQVSFKTNK 349 (352)
T ss_pred cCCCCCccceEEEEECCHHHHHHHHHHhCCCEECC--eEEEEEEccCC
Confidence 77899999999999999999999999999999977 78999998754
No 5
>KOG0122|consensus
Probab=99.04 E-value=2.8e-10 Score=83.28 Aligned_cols=47 Identities=28% Similarity=0.401 Sum_probs=42.3
Q ss_pred CCCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCC
Q psy6355 1 MKGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSP 49 (83)
Q Consensus 1 ~Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~ 49 (83)
+|+.||.|||||||.|.++++|.+||+.|||+-+ ...-|+|.++.+.
T Consensus 223 rdK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gy--d~LILrvEwskP~ 269 (270)
T KOG0122|consen 223 RDKETGLSKGFAFVTFESRDDAARAIADLNGYGY--DNLILRVEWSKPS 269 (270)
T ss_pred EccccCcccceEEEEEecHHHHHHHHHHccCccc--ceEEEEEEecCCC
Confidence 5899999999999999999999999999999988 4467999998754
No 6
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.02 E-value=5.9e-10 Score=74.87 Aligned_cols=47 Identities=32% Similarity=0.410 Sum_probs=42.5
Q ss_pred CCCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCC
Q psy6355 1 MKGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSP 49 (83)
Q Consensus 1 ~Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~ 49 (83)
+|+.||.+||||||.|.+.++|++||+.|||..+.| ++|.|+++...
T Consensus 68 ~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~G--r~l~V~~a~~~ 114 (144)
T PLN03134 68 VDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNG--RHIRVNPANDR 114 (144)
T ss_pred ecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECC--EEEEEEeCCcC
Confidence 478899999999999999999999999999999977 67999998654
No 7
>smart00361 RRM_1 RNA recognition motif.
Probab=98.99 E-value=7.4e-10 Score=65.61 Aligned_cols=41 Identities=27% Similarity=0.418 Sum_probs=35.5
Q ss_pred CCCCC--CCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEE
Q psy6355 1 MKGFT--DFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITV 43 (83)
Q Consensus 1 ~Dk~T--G~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V 43 (83)
+|+.+ |.+|||+||.|.+.++|.+|++.|||..+.| +.|.+
T Consensus 27 ~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~g--r~l~~ 69 (70)
T smart00361 27 IDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDG--RTVKA 69 (70)
T ss_pred eCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECC--EEEEe
Confidence 35666 9999999999999999999999999999977 45654
No 8
>KOG0146|consensus
Probab=98.94 E-value=7e-10 Score=82.76 Aligned_cols=50 Identities=26% Similarity=0.449 Sum_probs=46.7
Q ss_pred CCCccceEEEEeCCHHHHHHHHHHhCCCC-CCCCCcceEEEecCCCCCCcc
Q psy6355 5 TDFCRYLGFIRFDQRIEAERAIQELNGTI-PKGSNEPITVKFANSPSSSNK 54 (83)
Q Consensus 5 TG~SrG~gFV~F~~~e~A~~AI~~LnG~~-~~G~~~~l~V~fA~~~~~~~~ 54 (83)
+|.||||+||+|.+..||..||..|||.. +.|.+..|.|+||+++++++.
T Consensus 56 dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ADTdkER~l 106 (371)
T KOG0146|consen 56 DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKERTL 106 (371)
T ss_pred CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEeccchHHHHH
Confidence 68999999999999999999999999997 799999999999999988843
No 9
>KOG0145|consensus
Probab=98.91 E-value=1.2e-09 Score=81.26 Aligned_cols=52 Identities=33% Similarity=0.411 Sum_probs=48.2
Q ss_pred CCCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCCCcc
Q psy6355 1 MKGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSSNK 54 (83)
Q Consensus 1 ~Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~~~~ 54 (83)
.||.||+|-|||||.|.++++|++||+.|||-.+ .++.|.|+||++.+..++
T Consensus 75 RDKitGqSLGYGFVNYv~p~DAe~AintlNGLrL--Q~KTIKVSyARPSs~~Ik 126 (360)
T KOG0145|consen 75 RDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRL--QNKTIKVSYARPSSDSIK 126 (360)
T ss_pred eccccccccccceeeecChHHHHHHHhhhcceee--ccceEEEEeccCChhhhc
Confidence 4899999999999999999999999999999999 668899999999888755
No 10
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=98.90 E-value=3.4e-09 Score=80.00 Aligned_cols=50 Identities=38% Similarity=0.656 Sum_probs=45.6
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCC
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSS 51 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~ 51 (83)
|+.||.+||||||+|.+.++|++||+.||+..+++..++|.|++|+....
T Consensus 228 d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~~~ 277 (346)
T TIGR01659 228 DKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEEHGK 277 (346)
T ss_pred cCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCcccc
Confidence 77899999999999999999999999999999988888999999986533
No 11
>KOG4207|consensus
Probab=98.85 E-value=1.8e-09 Score=77.94 Aligned_cols=44 Identities=27% Similarity=0.585 Sum_probs=41.2
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecC
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFAN 47 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~ 47 (83)
|+.|++++|||||.|.+..+|+.|++.|+|.+++| ++|.|.+|.
T Consensus 48 dr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldg--RelrVq~ar 91 (256)
T KOG4207|consen 48 DRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDG--RELRVQMAR 91 (256)
T ss_pred ccccccccceeEEEeeecchHHHHHHhhcceeecc--ceeeehhhh
Confidence 89999999999999999999999999999999988 679888875
No 12
>KOG0117|consensus
Probab=98.82 E-value=5.6e-09 Score=81.52 Aligned_cols=47 Identities=34% Similarity=0.371 Sum_probs=40.3
Q ss_pred CCCCCCCccceEEEEeCCHHHHHHHHHHhCCCCC-CCCCcceEEEecC
Q psy6355 1 MKGFTDFCRYLGFIRFDQRIEAERAIQELNGTIP-KGSNEPITVKFAN 47 (83)
Q Consensus 1 ~Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~-~G~~~~l~V~fA~ 47 (83)
||+.+|.+||||||.|++.++|++||+.||++.| .|...-++|+.++
T Consensus 117 mD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Svan 164 (506)
T KOG0117|consen 117 MDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSVAN 164 (506)
T ss_pred ecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEeeec
Confidence 7999999999999999999999999999999987 6754445556555
No 13
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=98.80 E-value=9e-09 Score=77.73 Aligned_cols=48 Identities=23% Similarity=0.394 Sum_probs=42.8
Q ss_pred CCCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCC
Q psy6355 1 MKGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPS 50 (83)
Q Consensus 1 ~Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~ 50 (83)
.|+.||.+||||||+|.+.++|++||+.|||..+.+ ++|.|.++.+..
T Consensus 141 ~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~g--r~i~V~~a~p~~ 188 (346)
T TIGR01659 141 RDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRN--KRLKVSYARPGG 188 (346)
T ss_pred ecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCC--ceeeeecccccc
Confidence 378899999999999999999999999999999965 689999987643
No 14
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=98.79 E-value=3e-08 Score=72.54 Aligned_cols=51 Identities=63% Similarity=0.964 Sum_probs=46.3
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCCC
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSS 52 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~~ 52 (83)
|+.+|.++|||||.|.+.++|++||+.|||..+.|...+|.|++++.+.++
T Consensus 124 ~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~~~~~~ 174 (352)
T TIGR01661 124 DNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFANNPSSS 174 (352)
T ss_pred cCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCCCCcC
Confidence 566889999999999999999999999999999888889999999887654
No 15
>KOG0148|consensus
Probab=98.74 E-value=1e-08 Score=76.30 Aligned_cols=47 Identities=28% Similarity=0.366 Sum_probs=41.9
Q ss_pred CCCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCC
Q psy6355 1 MKGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSP 49 (83)
Q Consensus 1 ~Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~ 49 (83)
.|..|++|||||||.|..+++||+||..|||+=|.+ +.|+-.+|...
T Consensus 96 rD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~--R~IRTNWATRK 142 (321)
T KOG0148|consen 96 RDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGR--RTIRTNWATRK 142 (321)
T ss_pred ecccCCcccceeEEeccchHHHHHHHHHhCCeeecc--ceeeccccccC
Confidence 378899999999999999999999999999998944 77999887654
No 16
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.57 E-value=1.1e-07 Score=53.58 Aligned_cols=36 Identities=36% Similarity=0.676 Sum_probs=33.1
Q ss_pred cceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEec
Q psy6355 9 RYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFA 46 (83)
Q Consensus 9 rG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA 46 (83)
+|++||+|.+.++|+.|++.|||..+.| ++|.|.||
T Consensus 21 ~~~a~V~f~~~~~A~~a~~~l~~~~~~g--~~l~V~~a 56 (56)
T PF13893_consen 21 RGFAFVEFASVEDAQKAIEQLNGRQFNG--RPLKVSYA 56 (56)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTSEETT--EEEEEEEE
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEECC--cEEEEEEC
Confidence 6999999999999999999999999966 67999885
No 17
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=98.55 E-value=8.8e-08 Score=74.83 Aligned_cols=46 Identities=30% Similarity=0.526 Sum_probs=41.4
Q ss_pred CCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCC
Q psy6355 4 FTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSS 51 (83)
Q Consensus 4 ~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~ 51 (83)
.+|.+||||||.|.+.++|.+|++.|||..+.| ++|.|.+|.....
T Consensus 321 ~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~g--k~l~V~~a~~k~~ 366 (562)
T TIGR01628 321 EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGG--KPLYVALAQRKEQ 366 (562)
T ss_pred CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCC--ceeEEEeccCcHH
Confidence 579999999999999999999999999998976 7899999986543
No 18
>KOG0111|consensus
Probab=98.52 E-value=8.4e-08 Score=70.11 Aligned_cols=50 Identities=24% Similarity=0.344 Sum_probs=44.8
Q ss_pred CCCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCCC
Q psy6355 1 MKGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSS 52 (83)
Q Consensus 1 ~Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~~ 52 (83)
+|-.+++.||||||.|...|+|..||..||+..+-| +.|+|.||.+++-+
T Consensus 44 lDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~G--rtirVN~AkP~kik 93 (298)
T KOG0111|consen 44 LDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFG--RTIRVNLAKPEKIK 93 (298)
T ss_pred cchhcccccceeEEEeeccchhHHHhhcCchhhhcc--eeEEEeecCCcccc
Confidence 577889999999999999999999999999999977 67999999987544
No 19
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=98.52 E-value=2.1e-07 Score=75.07 Aligned_cols=47 Identities=19% Similarity=0.164 Sum_probs=42.4
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCC
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPS 50 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~ 50 (83)
|+.+|.+||||||.|.+.++|.+||+.|||..+.| +.|.|.++.++.
T Consensus 239 D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgG--r~LrV~kAi~pP 285 (612)
T TIGR01645 239 APTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGG--QYLRVGKCVTPP 285 (612)
T ss_pred cCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCC--eEEEEEecCCCc
Confidence 67789999999999999999999999999999977 679999887653
No 20
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=98.50 E-value=1.2e-07 Score=76.55 Aligned_cols=45 Identities=20% Similarity=0.307 Sum_probs=40.2
Q ss_pred CCCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecC
Q psy6355 1 MKGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFAN 47 (83)
Q Consensus 1 ~Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~ 47 (83)
+|+.||.+||||||.|.+.++|++||+.|||..+.| ++|.|....
T Consensus 141 ~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~G--R~IkV~rp~ 185 (612)
T TIGR01645 141 WDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGG--RNIKVGRPS 185 (612)
T ss_pred ecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEec--ceeeecccc
Confidence 478899999999999999999999999999999977 568887544
No 21
>KOG0108|consensus
Probab=98.50 E-value=1.7e-07 Score=73.05 Aligned_cols=50 Identities=30% Similarity=0.422 Sum_probs=44.9
Q ss_pred CCCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCCC
Q psy6355 1 MKGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSS 52 (83)
Q Consensus 1 ~Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~~ 52 (83)
.|+.||.+|||||+.|.+.++|+.||+.|||..+.| ++|+|.|+.....+
T Consensus 52 ~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~g--r~l~v~~~~~~~~~ 101 (435)
T KOG0108|consen 52 YDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNG--RKLRVNYASNRKNA 101 (435)
T ss_pred ccccCCCcCceeeEecCchhhHHHHHHhcCCcccCC--ceEEeecccccchh
Confidence 499999999999999999999999999999999977 67999998765443
No 22
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=98.49 E-value=2.1e-07 Score=70.54 Aligned_cols=45 Identities=33% Similarity=0.499 Sum_probs=41.0
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCC
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANS 48 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~ 48 (83)
|+.+|.++|||||.|.+.++|.+|++.|||..+.| ++|.|.|+..
T Consensus 221 d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g--~~i~v~~a~~ 265 (457)
T TIGR01622 221 DPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAG--RPIKVGYAQD 265 (457)
T ss_pred cCCCCccceEEEEEECCHHHHHHHHHhcCCcEECC--EEEEEEEccC
Confidence 67789999999999999999999999999988866 7899999764
No 23
>KOG4208|consensus
Probab=98.49 E-value=1.6e-07 Score=67.31 Aligned_cols=46 Identities=13% Similarity=0.140 Sum_probs=39.7
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCC
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSP 49 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~ 49 (83)
.+.||.|||||||.|++.+.|+-|.+.||+..+.+ +-|.|.|=.+.
T Consensus 85 nkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e--~lL~c~vmppe 130 (214)
T KOG4208|consen 85 NKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLME--HLLECHVMPPE 130 (214)
T ss_pred ccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhh--heeeeEEeCch
Confidence 57899999999999999999999999999999866 45777775544
No 24
>KOG0113|consensus
Probab=98.49 E-value=2.6e-07 Score=69.42 Aligned_cols=52 Identities=15% Similarity=0.180 Sum_probs=44.0
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCCCcccccc
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSSNKVIAP 58 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~~~~~~~~ 58 (83)
|+.||.|||||||+|.+..+...|.+..+|.+|+| +.|.|.+-. .++-+.|.
T Consensus 136 d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idg--rri~VDvER---gRTvkgW~ 187 (335)
T KOG0113|consen 136 DKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDG--RRILVDVER---GRTVKGWL 187 (335)
T ss_pred ecccCCccceEEEEeccHHHHHHHHHhccCceecC--cEEEEEecc---cccccccc
Confidence 78999999999999999999999999999999988 568887654 33334677
No 25
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.48 E-value=3e-07 Score=70.50 Aligned_cols=46 Identities=20% Similarity=0.187 Sum_probs=41.1
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCC
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSP 49 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~ 49 (83)
|+.+|.++|||||.|.+.++|+.||+.|||..+.| +.|.|.+|...
T Consensus 330 ~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~--~~l~v~~a~~~ 375 (509)
T TIGR01642 330 DIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGD--NKLHVQRACVG 375 (509)
T ss_pred cCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECC--eEEEEEECccC
Confidence 67799999999999999999999999999999966 56899988643
No 26
>KOG0130|consensus
Probab=98.48 E-value=1.3e-07 Score=64.82 Aligned_cols=46 Identities=22% Similarity=0.387 Sum_probs=40.5
Q ss_pred CCCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCC
Q psy6355 1 MKGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANS 48 (83)
Q Consensus 1 ~Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~ 48 (83)
+|+.||..|||+.|.|.+.++|++||..|||..+.| ++|.|.|+..
T Consensus 106 LDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~--q~v~VDw~Fv 151 (170)
T KOG0130|consen 106 LDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLG--QNVSVDWCFV 151 (170)
T ss_pred cccccccccceeeeehHhHHHHHHHHHhccchhhhC--CceeEEEEEe
Confidence 689999999999999999999999999999999866 4577766543
No 27
>smart00360 RRM RNA recognition motif.
Probab=98.46 E-value=4.6e-07 Score=50.09 Aligned_cols=40 Identities=30% Similarity=0.524 Sum_probs=33.7
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEE
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITV 43 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V 43 (83)
++.++.++|+|||.|.+.++|..|++.||+..+.| +.|.|
T Consensus 31 ~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~--~~~~v 70 (71)
T smart00360 31 DKDTGKSKGFAFVEFESEEDAEKALEALNGKELDG--RPLKV 70 (71)
T ss_pred CCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCC--cEEEe
Confidence 34478899999999999999999999999988865 45555
No 28
>KOG0131|consensus
Probab=98.46 E-value=2.8e-07 Score=65.32 Aligned_cols=50 Identities=28% Similarity=0.373 Sum_probs=45.3
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCCCc
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSSN 53 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~~~ 53 (83)
|..||.++|||||.|.+.+.+++||..|||+.+ ++++++|.++.+...+-
T Consensus 132 d~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l--~nr~itv~ya~k~~~kg 181 (203)
T KOG0131|consen 132 DPDTGNPKGFGFINYASFEASDAAIGSMNGQYL--CNRPITVSYAFKKDTKG 181 (203)
T ss_pred cccCCCCCCCeEEechhHHHHHHHHHHhccchh--cCCceEEEEEEecCCCc
Confidence 678999999999999999999999999999999 67899999998776553
No 29
>KOG0149|consensus
Probab=98.45 E-value=1.3e-07 Score=68.83 Aligned_cols=41 Identities=24% Similarity=0.303 Sum_probs=34.3
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEE
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITV 43 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V 43 (83)
||.||+|||||||.|.|.+.|++|++..|. +|+|+.-.+++
T Consensus 47 d~~t~rskGyGfVTf~d~~aa~rAc~dp~p-iIdGR~aNcnl 87 (247)
T KOG0149|consen 47 DKNTGRSKGYGFVTFRDAEAATRACKDPNP-IIDGRKANCNL 87 (247)
T ss_pred ccCCccccceeeEEeecHHHHHHHhcCCCC-cccccccccch
Confidence 899999999999999999999999987665 57886544443
No 30
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=98.40 E-value=2.9e-07 Score=52.34 Aligned_cols=33 Identities=30% Similarity=0.526 Sum_probs=30.5
Q ss_pred CCCCccceEEEEeCCHHHHHHHHHHhCCCCCCC
Q psy6355 4 FTDFCRYLGFIRFDQRIEAERAIQELNGTIPKG 36 (83)
Q Consensus 4 ~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G 36 (83)
.++.++|||||.|.+.++|++|++.|||..+.|
T Consensus 34 ~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~ 66 (70)
T PF00076_consen 34 SSGKSKGYAFVEFESEEDAEKALEELNGKKING 66 (70)
T ss_dssp TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred ccccccceEEEEEcCHHHHHHHHHHcCCCEECc
Confidence 468899999999999999999999999998866
No 31
>KOG0146|consensus
Probab=98.40 E-value=1.5e-07 Score=70.43 Aligned_cols=49 Identities=24% Similarity=0.418 Sum_probs=43.0
Q ss_pred CCCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCC
Q psy6355 1 MKGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSS 51 (83)
Q Consensus 1 ~Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~ 51 (83)
+||.|++||.||||.|++..+|+.||..|||.+| +.+.|.|.+.++..+
T Consensus 319 vDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQI--GMKRLKVQLKRPkda 367 (371)
T KOG0146|consen 319 VDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQI--GMKRLKVQLKRPKDA 367 (371)
T ss_pred ehhccccccceeeEecCCchhHHHHHHHhcchhh--hhhhhhhhhcCcccc
Confidence 5999999999999999999999999999999999 446788887766544
No 32
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.36 E-value=7.4e-07 Score=59.75 Aligned_cols=45 Identities=36% Similarity=0.503 Sum_probs=40.4
Q ss_pred CCCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecC
Q psy6355 1 MKGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFAN 47 (83)
Q Consensus 1 ~Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~ 47 (83)
.|+.+|.++|||||.|.+.++|..|++.|+|..+.| ++|.|..+.
T Consensus 149 ~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~--~~~~v~~~~ 193 (306)
T COG0724 149 RDRETGKSRGFAFVEFESEESAEKAIEELNGKELEG--RPLRVQKAQ 193 (306)
T ss_pred eccccCccCceEEEEecCHHHHHHHHHHcCCCeECC--ceeEeeccc
Confidence 367799999999999999999999999999999977 678898864
No 33
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=98.35 E-value=6.9e-07 Score=69.85 Aligned_cols=46 Identities=24% Similarity=0.408 Sum_probs=40.9
Q ss_pred CCCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCC
Q psy6355 1 MKGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANS 48 (83)
Q Consensus 1 ~Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~ 48 (83)
.|+.|+.|+|||||.|.+.++|++|++.||+..+.| ++|.|.++..
T Consensus 34 ~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~g--k~i~i~~s~~ 79 (562)
T TIGR01628 34 RDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGG--KPIRIMWSQR 79 (562)
T ss_pred ecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC--eeEEeecccc
Confidence 378899999999999999999999999999998866 6799988654
No 34
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=98.28 E-value=1.2e-06 Score=66.55 Aligned_cols=46 Identities=17% Similarity=0.292 Sum_probs=39.4
Q ss_pred CCCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCC
Q psy6355 1 MKGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSP 49 (83)
Q Consensus 1 ~Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~ 49 (83)
.|+.+|.++|||||.|.+.++|++||. |||..+.| .+|.|.++...
T Consensus 123 ~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g--~~i~v~~~~~~ 168 (457)
T TIGR01622 123 KDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLG--RPIIVQSSQAE 168 (457)
T ss_pred ecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECC--eeeEEeecchh
Confidence 377899999999999999999999996 89999866 67888876543
No 35
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.26 E-value=1.6e-06 Score=66.54 Aligned_cols=44 Identities=16% Similarity=0.163 Sum_probs=38.7
Q ss_pred CCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCC
Q psy6355 3 GFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANS 48 (83)
Q Consensus 3 k~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~ 48 (83)
..++.++|++||.|.+.++|++||..|||..+.| +.|.|.|.+.
T Consensus 458 ~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~g--r~v~~~~~~~ 501 (509)
T TIGR01642 458 RNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFND--RVVVAAFYGE 501 (509)
T ss_pred CCcCCCcceEEEEECCHHHHHHHHHHcCCCEECC--eEEEEEEeCH
Confidence 3456788999999999999999999999999977 6799998764
No 36
>KOG0226|consensus
Probab=98.25 E-value=6.1e-07 Score=66.33 Aligned_cols=42 Identities=26% Similarity=0.453 Sum_probs=37.6
Q ss_pred CCCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEE
Q psy6355 1 MKGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVK 44 (83)
Q Consensus 1 ~Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~ 44 (83)
.|+.||+|+||+||.|.+..++..|+.+|||... ++++|..+
T Consensus 224 RdkRTgKSkgygfVSf~~pad~~rAmrem~gkyV--gsrpiklR 265 (290)
T KOG0226|consen 224 RDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYV--GSRPIKLR 265 (290)
T ss_pred ccccccccccceeeeecCHHHHHHHHHhhccccc--ccchhHhh
Confidence 3889999999999999999999999999999988 55777664
No 37
>smart00362 RRM_2 RNA recognition motif.
Probab=98.17 E-value=3.2e-06 Score=46.88 Aligned_cols=36 Identities=36% Similarity=0.627 Sum_probs=31.1
Q ss_pred CCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEE
Q psy6355 6 DFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITV 43 (83)
Q Consensus 6 G~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V 43 (83)
+.++|+|||.|.+.++|++|++.|+|..+.| +.|.|
T Consensus 36 ~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~--~~i~v 71 (72)
T smart00362 36 GKSKGFAFVEFESEEDAEKAIEALNGTKLGG--RPLRV 71 (72)
T ss_pred CCCCceEEEEeCCHHHHHHHHHHhCCcEECC--EEEee
Confidence 6788999999999999999999999988865 45555
No 38
>KOG0125|consensus
Probab=98.16 E-value=2.1e-06 Score=65.31 Aligned_cols=41 Identities=32% Similarity=0.510 Sum_probs=36.3
Q ss_pred CCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCC
Q psy6355 6 DFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANS 48 (83)
Q Consensus 6 G~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~ 48 (83)
.-|||||||.|++.++|++|-++|||..++|+ .|.|..|..
T Consensus 133 RGSKGFGFVTmen~~dadRARa~LHgt~VEGR--kIEVn~ATa 173 (376)
T KOG0125|consen 133 RGSKGFGFVTMENPADADRARAELHGTVVEGR--KIEVNNATA 173 (376)
T ss_pred CCCCccceEEecChhhHHHHHHHhhcceeece--EEEEeccch
Confidence 45899999999999999999999999999994 588887653
No 39
>KOG0131|consensus
Probab=98.14 E-value=2.2e-06 Score=60.79 Aligned_cols=45 Identities=31% Similarity=0.325 Sum_probs=40.9
Q ss_pred CCCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecC
Q psy6355 1 MKGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFAN 47 (83)
Q Consensus 1 ~Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~ 47 (83)
.|+.|...+||||++|.++|+|+-||+.||+-++.| +||.|.-+.
T Consensus 43 kDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYg--rpIrv~kas 87 (203)
T KOG0131|consen 43 KDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYG--RPIRVNKAS 87 (203)
T ss_pred hhhhcccccceeEEEEechhhhHHHHHHHHHHHhcC--ceeEEEecc
Confidence 378899999999999999999999999999878877 789998876
No 40
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=98.07 E-value=4.3e-06 Score=67.22 Aligned_cols=33 Identities=30% Similarity=0.362 Sum_probs=30.9
Q ss_pred CCCCCCCccceEEEEeCCHHHHHHHHHHhCCCCC
Q psy6355 1 MKGFTDFCRYLGFIRFDQRIEAERAIQELNGTIP 34 (83)
Q Consensus 1 ~Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~ 34 (83)
+| .+|.|||||||.|.+.++|++||+.||+..+
T Consensus 92 ~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i 124 (578)
T TIGR01648 92 MD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEI 124 (578)
T ss_pred EC-CCCCccceEEEEeCCHHHHHHHHHHcCCCee
Confidence 46 6899999999999999999999999999887
No 41
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=98.02 E-value=6.5e-06 Score=47.46 Aligned_cols=34 Identities=29% Similarity=0.426 Sum_probs=30.2
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCC
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKG 36 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G 36 (83)
++. |.++|+|||.|.+.++|.+|++.++|..+.|
T Consensus 33 ~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g 66 (70)
T PF14259_consen 33 NKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDG 66 (70)
T ss_dssp STT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred eec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECC
Confidence 344 8899999999999999999999999888866
No 42
>KOG0126|consensus
Probab=98.02 E-value=8.3e-07 Score=63.17 Aligned_cols=43 Identities=21% Similarity=0.275 Sum_probs=38.6
Q ss_pred CCCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEe
Q psy6355 1 MKGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKF 45 (83)
Q Consensus 1 ~Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~f 45 (83)
.|+.||.|+||||.+|++..+-.-||..|||-++.| +.|+|.-
T Consensus 69 RDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~g--RtirVDH 111 (219)
T KOG0126|consen 69 RDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILG--RTIRVDH 111 (219)
T ss_pred ecCCCCcccceEEEEecCccceEEEEeccCCceecc--eeEEeee
Confidence 389999999999999999999999999999999977 5688753
No 43
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=97.99 E-value=9.9e-06 Score=65.14 Aligned_cols=41 Identities=34% Similarity=0.528 Sum_probs=37.1
Q ss_pred CccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCC
Q psy6355 7 FCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSP 49 (83)
Q Consensus 7 ~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~ 49 (83)
..+|||||.|.+.++|++|++.|||..+.| +.|.|.+|.++
T Consensus 267 ~~rgfAFVeF~s~e~A~kAi~~lnG~~i~G--r~I~V~~Akp~ 307 (578)
T TIGR01648 267 KIRDYAFVHFEDREDAVKAMDELNGKELEG--SEIEVTLAKPV 307 (578)
T ss_pred eecCeEEEEeCCHHHHHHHHHHhCCCEECC--EEEEEEEccCC
Confidence 457899999999999999999999999977 67999999765
No 44
>KOG0147|consensus
Probab=97.98 E-value=8.1e-06 Score=65.04 Aligned_cols=44 Identities=30% Similarity=0.411 Sum_probs=38.5
Q ss_pred CCCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEec
Q psy6355 1 MKGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFA 46 (83)
Q Consensus 1 ~Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA 46 (83)
+|..||+++|||||.|.+.++|.+|++.|||-.+.| +.|.|...
T Consensus 312 ~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAG--r~ikV~~v 355 (549)
T KOG0147|consen 312 KDSETGRSKGFGFITFVNKEDARKALEQLNGFELAG--RLIKVSVV 355 (549)
T ss_pred cccccccccCcceEEEecHHHHHHHHHHhccceecC--ceEEEEEe
Confidence 466799999999999999999999999999977877 66887653
No 45
>KOG0124|consensus
Probab=97.96 E-value=8.3e-06 Score=63.37 Aligned_cols=44 Identities=20% Similarity=0.322 Sum_probs=39.3
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecC
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFAN 47 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~ 47 (83)
|+.||..|||+||+|+-+|.|.-|++.|||..++| +.|.|....
T Consensus 148 Dp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGG--RNiKVgrPs 191 (544)
T KOG0124|consen 148 DPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGG--RNIKVGRPS 191 (544)
T ss_pred ccccccccceEEEEEeCcHHHHHHHHHhccccccC--ccccccCCC
Confidence 88999999999999999999999999999999988 457776433
No 46
>KOG0107|consensus
Probab=97.95 E-value=8.4e-06 Score=57.57 Aligned_cols=40 Identities=25% Similarity=0.367 Sum_probs=35.0
Q ss_pred CccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCC
Q psy6355 7 FCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANS 48 (83)
Q Consensus 7 ~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~ 48 (83)
...|||||+|+++.+|+.|+..|||..+-| ..|.|++..-
T Consensus 45 nPPGfAFVEFed~RDA~DAvr~LDG~~~cG--~r~rVE~S~G 84 (195)
T KOG0107|consen 45 NPPGFAFVEFEDPRDAEDAVRYLDGKDICG--SRIRVELSTG 84 (195)
T ss_pred cCCCceEEeccCcccHHHHHhhcCCccccC--ceEEEEeecC
Confidence 467999999999999999999999999966 5688888654
No 47
>KOG0117|consensus
Probab=97.91 E-value=1.4e-05 Score=62.87 Aligned_cols=45 Identities=33% Similarity=0.529 Sum_probs=39.8
Q ss_pred ccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCCCcc
Q psy6355 8 CRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSSNK 54 (83)
Q Consensus 8 SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~~~~ 54 (83)
.|-||||+|.++++|-+|++.|||+.++| .+|.|.+|.++.++++
T Consensus 292 ~rDYaFVHf~eR~davkAm~~~ngkeldG--~~iEvtLAKP~~k~k~ 336 (506)
T KOG0117|consen 292 PRDYAFVHFAEREDAVKAMKETNGKELDG--SPIEVTLAKPVDKKKK 336 (506)
T ss_pred ccceeEEeecchHHHHHHHHHhcCceecC--ceEEEEecCChhhhcc
Confidence 46799999999999999999999999998 5799999998766643
No 48
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=97.89 E-value=2.1e-05 Score=61.16 Aligned_cols=40 Identities=23% Similarity=0.302 Sum_probs=35.7
Q ss_pred ccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCC
Q psy6355 8 CRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSP 49 (83)
Q Consensus 8 SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~ 49 (83)
++|||||.|.+.++|+.||+.|||..+.| ++|.|.++...
T Consensus 312 ~~g~afV~f~~~~~A~~Ai~~lng~~l~g--~~l~v~~s~~~ 351 (481)
T TIGR01649 312 KKETALIEMADPYQAQLALTHLNGVKLFG--KPLRVCPSKQQ 351 (481)
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCEECC--ceEEEEEcccc
Confidence 47999999999999999999999999977 67999987543
No 49
>KOG0121|consensus
Probab=97.85 E-value=2.8e-05 Score=52.82 Aligned_cols=45 Identities=22% Similarity=0.385 Sum_probs=39.9
Q ss_pred CCCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecC
Q psy6355 1 MKGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFAN 47 (83)
Q Consensus 1 ~Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~ 47 (83)
+|+.+-..=|||||.|.++++|+.|++.+||+.++. ++|.+.+..
T Consensus 70 Ldr~kktpCGFCFVeyy~~~dA~~AlryisgtrLdd--r~ir~D~D~ 114 (153)
T KOG0121|consen 70 LDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDD--RPIRIDWDA 114 (153)
T ss_pred cccCCcCccceEEEEEecchhHHHHHHHhccCcccc--cceeeeccc
Confidence 588888889999999999999999999999999954 789888643
No 50
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=97.81 E-value=6.7e-05 Score=41.59 Aligned_cols=36 Identities=31% Similarity=0.605 Sum_probs=31.3
Q ss_pred CccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEE
Q psy6355 7 FCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVK 44 (83)
Q Consensus 7 ~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~ 44 (83)
.++|++||.|.+.++|..|++.+++..+.| +.+.|.
T Consensus 38 ~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~--~~~~v~ 73 (74)
T cd00590 38 KSKGFAFVEFEDEEDAEKALEALNGKELGG--RPLRVE 73 (74)
T ss_pred CcceEEEEEECCHHHHHHHHHHhCCCeECC--eEEEEe
Confidence 568999999999999999999999998865 556665
No 51
>PLN03120 nucleic acid binding protein; Provisional
Probab=97.78 E-value=5.3e-05 Score=55.90 Aligned_cols=39 Identities=21% Similarity=0.307 Sum_probs=34.3
Q ss_pred CccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCC
Q psy6355 7 FCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANS 48 (83)
Q Consensus 7 ~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~ 48 (83)
.++|||||.|.+.++|+.||. |||..+.| ++|.|..++.
T Consensus 41 ~~~GfAFVtF~d~eaAe~All-LnG~~l~g--r~V~Vt~a~~ 79 (260)
T PLN03120 41 ERSQIAYVTFKDPQGAETALL-LSGATIVD--QSVTITPAED 79 (260)
T ss_pred CCCCEEEEEeCcHHHHHHHHH-hcCCeeCC--ceEEEEeccC
Confidence 468999999999999999995 99999966 6799998763
No 52
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=97.77 E-value=5e-05 Score=59.03 Aligned_cols=40 Identities=18% Similarity=0.302 Sum_probs=33.7
Q ss_pred cceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCC
Q psy6355 9 RYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANS 48 (83)
Q Consensus 9 rG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~ 48 (83)
+|+|||.|.+.++|++|++.|||..+.+....|.|.|+..
T Consensus 134 ~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk~ 173 (481)
T TIGR01649 134 VFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYAKP 173 (481)
T ss_pred ceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEecC
Confidence 4799999999999999999999999865445677777654
No 53
>KOG0148|consensus
Probab=97.74 E-value=5e-05 Score=56.86 Aligned_cols=40 Identities=23% Similarity=0.372 Sum_probs=34.9
Q ss_pred ccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCC
Q psy6355 8 CRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSP 49 (83)
Q Consensus 8 SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~ 49 (83)
-+||+||+|+++|.|..||-.||++.++| ..++|.+-...
T Consensus 199 ~qGYaFVrF~tkEaAahAIv~mNntei~G--~~VkCsWGKe~ 238 (321)
T KOG0148|consen 199 DQGYAFVRFETKEAAAHAIVQMNNTEIGG--QLVRCSWGKEG 238 (321)
T ss_pred ccceEEEEecchhhHHHHHHHhcCceeCc--eEEEEeccccC
Confidence 47999999999999999999999999988 56888876543
No 54
>KOG0110|consensus
Probab=97.70 E-value=6e-05 Score=61.69 Aligned_cols=39 Identities=26% Similarity=0.537 Sum_probs=36.0
Q ss_pred CccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecC
Q psy6355 7 FCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFAN 47 (83)
Q Consensus 7 ~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~ 47 (83)
.|.|||||.|.+.++|+.|++.|+|+.+.| +.|.|+++.
T Consensus 558 lSmGfgFVEF~~~e~A~~a~k~lqgtvldG--H~l~lk~S~ 596 (725)
T KOG0110|consen 558 LSMGFGFVEFAKPESAQAALKALQGTVLDG--HKLELKISE 596 (725)
T ss_pred cccceeEEEecCHHHHHHHHHHhcCceecC--ceEEEEecc
Confidence 578999999999999999999999999988 668898887
No 55
>KOG0110|consensus
Probab=97.69 E-value=5.9e-05 Score=61.75 Aligned_cols=42 Identities=36% Similarity=0.520 Sum_probs=38.0
Q ss_pred CCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCC
Q psy6355 5 TDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANS 48 (83)
Q Consensus 5 TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~ 48 (83)
+|.+|+||||.|.+.++|++||+.+|+..+ .+.-|.|.++..
T Consensus 5 dGk~R~F~FiGf~~eeeA~~Ai~~fn~s~i--~ts~i~Ve~~~~ 46 (725)
T KOG0110|consen 5 DGKFRRFGFIGFKSEEEAQKAIKYFNKSFI--NTSRITVEFCKS 46 (725)
T ss_pred CCceeeeeEeeeccHHHHHHHHHHhhcccc--ccceEEEEehhh
Confidence 699999999999999999999999999999 556799988664
No 56
>KOG0127|consensus
Probab=97.67 E-value=6.1e-05 Score=60.72 Aligned_cols=43 Identities=28% Similarity=0.600 Sum_probs=37.3
Q ss_pred CCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCC
Q psy6355 4 FTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSP 49 (83)
Q Consensus 4 ~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~ 49 (83)
+++.+ |||||.|....+|+.|++.|||.++.| +||-|.||-..
T Consensus 154 dgklc-GFaFV~fk~~~dA~~Al~~~N~~~i~g--R~VAVDWAV~K 196 (678)
T KOG0127|consen 154 DGKLC-GFAFVQFKEKKDAEKALEFFNGNKIDG--RPVAVDWAVDK 196 (678)
T ss_pred CCCcc-ceEEEEEeeHHHHHHHHHhccCceecC--ceeEEeeeccc
Confidence 33455 999999999999999999999999988 78999998643
No 57
>PLN03213 repressor of silencing 3; Provisional
Probab=97.66 E-value=5.8e-05 Score=60.61 Aligned_cols=42 Identities=19% Similarity=0.309 Sum_probs=36.2
Q ss_pred CCCCCccceEEEEeCCH--HHHHHHHHHhCCCCCCCCCcceEEEecCC
Q psy6355 3 GFTDFCRYLGFIRFDQR--IEAERAIQELNGTIPKGSNEPITVKFANS 48 (83)
Q Consensus 3 k~TG~SrG~gFV~F~~~--e~A~~AI~~LnG~~~~G~~~~l~V~fA~~ 48 (83)
+.|| ||||||.|... .++++||..|||..+.| +.|.|.-|.+
T Consensus 44 RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKG--R~LKVNKAKP 87 (759)
T PLN03213 44 RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKG--GRLRLEKAKE 87 (759)
T ss_pred cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecC--ceeEEeeccH
Confidence 5677 99999999987 78999999999999988 5688987753
No 58
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.65 E-value=0.00011 Score=46.90 Aligned_cols=49 Identities=16% Similarity=0.140 Sum_probs=41.5
Q ss_pred CCCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCC--CCCcceEEEecCCC
Q psy6355 1 MKGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPK--GSNEPITVKFANSP 49 (83)
Q Consensus 1 ~Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~--G~~~~l~V~fA~~~ 49 (83)
+|..++.+.|||||-|.+.+.+.+-.+.++|..+. .+.+.+.|.+|.-.
T Consensus 37 iDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i~yAriQ 87 (97)
T PF04059_consen 37 IDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEISYARIQ 87 (97)
T ss_pred eeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEEehhHhh
Confidence 57788999999999999999999999999999874 24567778888654
No 59
>KOG4212|consensus
Probab=97.61 E-value=8.6e-05 Score=58.80 Aligned_cols=41 Identities=20% Similarity=0.240 Sum_probs=37.2
Q ss_pred CCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEec
Q psy6355 4 FTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFA 46 (83)
Q Consensus 4 ~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA 46 (83)
..|++|||+.|+|.++|.+++|++.||-+.+.| ++|.|+-.
T Consensus 81 ~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~G--R~l~vKEd 121 (608)
T KOG4212|consen 81 ESGKARGCAVVEFKDPENVQKALEKLNKYEVNG--RELVVKED 121 (608)
T ss_pred cCCCcCCceEEEeeCHHHHHHHHHHhhhccccC--ceEEEecc
Confidence 479999999999999999999999999999977 78999843
No 60
>KOG0123|consensus
Probab=97.29 E-value=0.00036 Score=53.42 Aligned_cols=41 Identities=27% Similarity=0.494 Sum_probs=34.8
Q ss_pred ccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCC
Q psy6355 8 CRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSS 51 (83)
Q Consensus 8 SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~ 51 (83)
|+|| ||+|.+.++|++||+.|||..+.+ ..|.|.......+
T Consensus 115 ~kg~-FV~f~~e~~a~~ai~~~ng~ll~~--kki~vg~~~~~~e 155 (369)
T KOG0123|consen 115 SKGY-FVQFESEESAKKAIEKLNGMLLNG--KKIYVGLFERKEE 155 (369)
T ss_pred ceee-EEEeCCHHHHHHHHHHhcCcccCC--CeeEEeeccchhh
Confidence 9999 999999999999999999999866 6688876554433
No 61
>KOG1457|consensus
Probab=97.17 E-value=0.0011 Score=48.82 Aligned_cols=44 Identities=23% Similarity=0.379 Sum_probs=36.0
Q ss_pred CccceEEEEeCCHHHHHHHHHHhCCCCC-CCCCcceEEEecCCCC
Q psy6355 7 FCRYLGFIRFDQRIEAERAIQELNGTIP-KGSNEPITVKFANSPS 50 (83)
Q Consensus 7 ~SrG~gFV~F~~~e~A~~AI~~LnG~~~-~G~~~~l~V~fA~~~~ 50 (83)
-.+-+|||.|.+..+|..|++.|||..+ ......|.+.+|....
T Consensus 75 ~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiElAKSNt 119 (284)
T KOG1457|consen 75 VCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIELAKSNT 119 (284)
T ss_pred cccceEEEEecchHHHHHHHHHhcCeeeccccCceeEeeehhcCc
Confidence 3457999999999999999999999987 3345678898887543
No 62
>KOG0127|consensus
Probab=97.17 E-value=0.00042 Score=55.99 Aligned_cols=48 Identities=21% Similarity=0.252 Sum_probs=41.4
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCC
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSS 51 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~ 51 (83)
++.++.+||||||.|.=.++++.|+..+++.+++|+ .|+|.+|.+...
T Consensus 40 ~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr--~l~v~~A~~R~r 87 (678)
T KOG0127|consen 40 NKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGR--ILNVDPAKKRAR 87 (678)
T ss_pred CCCcccccCccceeeehHhHHHHHHHHhhcCcccce--eccccccccccc
Confidence 567789999999999999999999999999999884 588888775433
No 63
>PLN03121 nucleic acid binding protein; Provisional
Probab=97.15 E-value=0.00089 Score=49.08 Aligned_cols=39 Identities=13% Similarity=0.184 Sum_probs=33.5
Q ss_pred CCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecC
Q psy6355 6 DFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFAN 47 (83)
Q Consensus 6 G~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~ 47 (83)
+.++|+|||+|.+++.++.|+ .|||..|.+ ++|.|.-+.
T Consensus 41 ~et~gfAfVtF~d~~aaetAl-lLnGa~l~d--~~I~It~~~ 79 (243)
T PLN03121 41 GEYACTAYVTFKDAYALETAV-LLSGATIVD--QRVCITRWG 79 (243)
T ss_pred CCcceEEEEEECCHHHHHHHH-hcCCCeeCC--ceEEEEeCc
Confidence 677799999999999999998 699999965 678887655
No 64
>KOG0123|consensus
Probab=97.07 E-value=0.0011 Score=50.86 Aligned_cols=40 Identities=28% Similarity=0.517 Sum_probs=35.7
Q ss_pred ccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCC
Q psy6355 8 CRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSP 49 (83)
Q Consensus 8 SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~ 49 (83)
|-|||||.|.++++|++||+.||...+.| ++|++.+....
T Consensus 36 slgy~yvnf~~~~da~~A~~~~n~~~~~~--~~~rim~s~rd 75 (369)
T KOG0123|consen 36 SLGYAYVNFQQPADAERALDTMNFDVLKG--KPIRIMWSQRD 75 (369)
T ss_pred ccceEEEecCCHHHHHHHHHHcCCcccCC--cEEEeehhccC
Confidence 99999999999999999999999999977 67888876543
No 65
>KOG4206|consensus
Probab=97.02 E-value=0.0011 Score=48.06 Aligned_cols=45 Identities=29% Similarity=0.414 Sum_probs=40.3
Q ss_pred CCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCC
Q psy6355 5 TDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSS 51 (83)
Q Consensus 5 TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~ 51 (83)
|...||-|||.|.+.+.|-.|++.|+|.-+.| +++++.||..++.
T Consensus 48 t~KmRGQA~VvFk~~~~As~A~r~l~gfpFyg--K~mriqyA~s~sd 92 (221)
T KOG4206|consen 48 TPKMRGQAFVVFKETEAASAALRALQGFPFYG--KPMRIQYAKSDSD 92 (221)
T ss_pred CCCccCceEEEecChhHHHHHHHHhcCCcccC--chhheecccCccc
Confidence 67889999999999999999999999999866 7899999986644
No 66
>KOG4209|consensus
Probab=96.90 E-value=0.0015 Score=47.26 Aligned_cols=42 Identities=21% Similarity=0.346 Sum_probs=36.5
Q ss_pred CCCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEe
Q psy6355 1 MKGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKF 45 (83)
Q Consensus 1 ~Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~f 45 (83)
.|+.+|.+|||+||.|.+.+..++|+. |||..+.| +.+.|..
T Consensus 135 ~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~--~~i~vt~ 176 (231)
T KOG4209|consen 135 KDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPG--PAIEVTL 176 (231)
T ss_pred ccccCCCcceeEEEecccHhhhHHHhh-cCCccccc--ccceeee
Confidence 478889999999999999999999998 99999977 4566654
No 67
>KOG0114|consensus
Probab=96.85 E-value=0.0025 Score=42.11 Aligned_cols=43 Identities=16% Similarity=0.268 Sum_probs=36.8
Q ss_pred CCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCC
Q psy6355 6 DFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPS 50 (83)
Q Consensus 6 G~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~ 50 (83)
-.-||-|||.|++..+|.+|++.|+|..+.+ +.|.|-+..+..
T Consensus 54 k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~--ryl~vlyyq~~~ 96 (124)
T KOG0114|consen 54 KETRGTAFVVYEDIFDAKKACDHLSGYNVDN--RYLVVLYYQPED 96 (124)
T ss_pred cCcCceEEEEehHhhhHHHHHHHhcccccCC--ceEEEEecCHHH
Confidence 3568999999999999999999999999844 789998876543
No 68
>KOG0105|consensus
Probab=96.84 E-value=0.00093 Score=48.06 Aligned_cols=41 Identities=24% Similarity=0.361 Sum_probs=36.2
Q ss_pred ccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCC
Q psy6355 8 CRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPS 50 (83)
Q Consensus 8 SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~ 50 (83)
...||||+|++..+|+.||..-||..++|+. |.|+|+..-.
T Consensus 44 ~ppfafVeFEd~RDAeDAiygRdGYdydg~r--LRVEfprggr 84 (241)
T KOG0105|consen 44 PPPFAFVEFEDPRDAEDAIYGRDGYDYDGCR--LRVEFPRGGR 84 (241)
T ss_pred CCCeeEEEecCccchhhhhhcccccccCcce--EEEEeccCCC
Confidence 3579999999999999999999999998864 9999987654
No 69
>KOG0120|consensus
Probab=96.74 E-value=0.00088 Score=53.36 Aligned_cols=50 Identities=20% Similarity=0.186 Sum_probs=42.7
Q ss_pred CCCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCCC
Q psy6355 1 MKGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSS 52 (83)
Q Consensus 1 ~Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~~ 52 (83)
.|..||.|+||+|-.|.+....+.||..|||.++.+ +.|.|..|-....+
T Consensus 323 ~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd--~~lvvq~A~~g~~~ 372 (500)
T KOG0120|consen 323 KDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGD--KKLVVQRAIVGASN 372 (500)
T ss_pred cccccccccceeeeeeeCCcchhhhhcccchhhhcC--ceeEeehhhccchh
Confidence 367889999999999999999999999999999955 56888877665444
No 70
>KOG0109|consensus
Probab=96.51 E-value=0.0031 Score=47.83 Aligned_cols=40 Identities=28% Similarity=0.473 Sum_probs=34.6
Q ss_pred CccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCC
Q psy6355 7 FCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANS 48 (83)
Q Consensus 7 ~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~ 48 (83)
.-|+|+||+|+-.++|..||+.||+..+.| +++.|.+...
T Consensus 110 ivkdy~fvh~d~~eda~~air~l~~~~~~g--k~m~vq~sts 149 (346)
T KOG0109|consen 110 IVKDYAFVHFDRAEDAVEAIRGLDNTEFQG--KRMHVQLSTS 149 (346)
T ss_pred eecceeEEEEeeccchHHHHhccccccccc--ceeeeeeecc
Confidence 458999999999999999999999999988 5677776554
No 71
>KOG4212|consensus
Probab=96.45 E-value=0.0052 Score=48.95 Aligned_cols=38 Identities=29% Similarity=0.368 Sum_probs=33.5
Q ss_pred CCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEec
Q psy6355 5 TDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFA 46 (83)
Q Consensus 5 TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA 46 (83)
.|.++| .|+|.++++|+.|+..|||.+++| +.|.|.|.
T Consensus 571 ~GkskG--VVrF~s~edAEra~a~Mngs~l~G--r~I~V~y~ 608 (608)
T KOG4212|consen 571 NGKSKG--VVRFFSPEDAERACALMNGSRLDG--RNIKVTYF 608 (608)
T ss_pred cCCccc--eEEecCHHHHHHHHHHhccCcccC--ceeeeeeC
Confidence 578888 899999999999999999999988 56888763
No 72
>KOG0533|consensus
Probab=96.09 E-value=0.016 Score=42.54 Aligned_cols=48 Identities=29% Similarity=0.463 Sum_probs=41.0
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCCC
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSS 52 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~~ 52 (83)
|+ .|.|.|.|-|.|...++|+.||+.+||..++| +++.+....++...
T Consensus 118 ~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG--~~mk~~~i~~~~~~ 165 (243)
T KOG0533|consen 118 DR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDG--RPMKIEIISSPSQS 165 (243)
T ss_pred CC-CCCCCccceeeecchHhHHHHHHHhcCcccCC--ceeeeEEecCcccc
Confidence 44 69999999999999999999999999976888 56888877776655
No 73
>KOG0132|consensus
Probab=96.07 E-value=0.0093 Score=49.95 Aligned_cols=45 Identities=24% Similarity=0.358 Sum_probs=38.3
Q ss_pred CccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCCCc
Q psy6355 7 FCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSSN 53 (83)
Q Consensus 7 ~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~~~ 53 (83)
-+||||||++..+.+|++|+..|+...+ ..+.|.|+||....-+.
T Consensus 455 ~~R~cAfI~M~~RqdA~kalqkl~n~kv--~~k~Iki~Wa~g~G~ks 499 (894)
T KOG0132|consen 455 PPRGCAFIKMVRRQDAEKALQKLSNVKV--ADKTIKIAWAVGKGPKS 499 (894)
T ss_pred cCCceeEEEEeehhHHHHHHHHHhcccc--cceeeEEeeeccCCcch
Confidence 4799999999999999999999998888 44679999988765553
No 74
>KOG0109|consensus
Probab=95.92 E-value=0.0053 Score=46.56 Aligned_cols=37 Identities=30% Similarity=0.533 Sum_probs=32.3
Q ss_pred ccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEec
Q psy6355 8 CRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFA 46 (83)
Q Consensus 8 SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA 46 (83)
-|-||||+.++...|+.||..|||.++.| ..|+|+-+
T Consensus 35 vKNYgFVHiEdktaaedairNLhgYtLhg--~nInVeaS 71 (346)
T KOG0109|consen 35 VKNYGFVHIEDKTAAEDAIRNLHGYTLHG--VNINVEAS 71 (346)
T ss_pred ecccceEEeecccccHHHHhhcccceecc--eEEEEEec
Confidence 46799999999999999999999999988 45777744
No 75
>KOG2314|consensus
Probab=95.89 E-value=0.013 Score=47.80 Aligned_cols=41 Identities=20% Similarity=0.283 Sum_probs=33.7
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEE
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVK 44 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~ 44 (83)
|..+| ++||.|+.|.+..+|+.||+.|||+.++- .+.+.|.
T Consensus 99 ~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldk-nHtf~v~ 139 (698)
T KOG2314|consen 99 DEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDK-NHTFFVR 139 (698)
T ss_pred CccCC-eeeEEEEEecChhhHHHHHHhcccceecc-cceEEee
Confidence 44444 99999999999999999999999999853 3456664
No 76
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=95.64 E-value=0.034 Score=35.25 Aligned_cols=42 Identities=26% Similarity=0.329 Sum_probs=28.8
Q ss_pred CccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCC
Q psy6355 7 FCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPS 50 (83)
Q Consensus 7 ~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~ 50 (83)
.+.|.|.|.|.+.+.|++|.+-|+|...-| ..|.|+|....+
T Consensus 37 v~~~tAilrF~~~~~A~RA~KRmegEdVfG--~kI~v~~~~~~r 78 (90)
T PF11608_consen 37 VSGGTAILRFPNQEFAERAQKRMEGEDVFG--NKISVSFSPKNR 78 (90)
T ss_dssp --TT-EEEEESSHHHHHHHHHHHTT--SSS--S--EEESS--S-
T ss_pred EeCCEEEEEeCCHHHHHHHHHhhccccccc--ceEEEEEcCCcc
Confidence 456889999999999999999999998766 458999985443
No 77
>KOG4205|consensus
Probab=95.61 E-value=0.0059 Score=46.07 Aligned_cols=49 Identities=18% Similarity=0.187 Sum_probs=36.3
Q ss_pred CCCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCCC
Q psy6355 1 MKGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSS 52 (83)
Q Consensus 1 ~Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~~ 52 (83)
.|+.++++|||+||.|.+.++-.+++.. .-+.++| +.|.++-|.+....
T Consensus 40 ~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dg--r~ve~k~av~r~~~ 88 (311)
T KOG4205|consen 40 RDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDG--RSVEPKRAVSREDQ 88 (311)
T ss_pred ccCCCCCcccccceecCCCcchheeecc-cccccCC--ccccceeccCcccc
Confidence 4889999999999999998888877654 3445766 45666666655443
No 78
>KOG0106|consensus
Probab=95.60 E-value=0.005 Score=44.47 Aligned_cols=39 Identities=26% Similarity=0.509 Sum_probs=33.9
Q ss_pred ccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCC
Q psy6355 8 CRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANS 48 (83)
Q Consensus 8 SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~ 48 (83)
-.||+||.|.+..+|+.||..|||..+.|.. +.|.++..
T Consensus 34 k~gf~fv~fed~rda~Dav~~l~~~~l~~e~--~vve~~r~ 72 (216)
T KOG0106|consen 34 KNGFGFVEFEDPRDADDAVHDLDGKELCGER--LVVEHARG 72 (216)
T ss_pred ecccceeccCchhhhhcccchhcCceeccee--eeeecccc
Confidence 3589999999999999999999999987654 88888773
No 79
>KOG1995|consensus
Probab=95.47 E-value=0.012 Score=45.17 Aligned_cols=47 Identities=19% Similarity=0.134 Sum_probs=42.1
Q ss_pred CCCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCC
Q psy6355 1 MKGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSP 49 (83)
Q Consensus 1 ~Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~ 49 (83)
.|+.|+.+||-|.|.|++...|..||..++++.+.+ .+|.|.+|...
T Consensus 108 ~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g--n~ikvs~a~~r 154 (351)
T KOG1995|consen 108 TDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG--NTIKVSLAERR 154 (351)
T ss_pred ccccccCcCCceeeeecChhhhhhhhhhhccccccC--CCchhhhhhhc
Confidence 488999999999999999999999999999999866 67889888654
No 80
>KOG0415|consensus
Probab=95.04 E-value=0.023 Score=44.40 Aligned_cols=45 Identities=22% Similarity=0.321 Sum_probs=39.9
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCC
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANS 48 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~ 48 (83)
|+.||.|--|+||.|.+.+++++|.-.|+...|+- +.|.|.|...
T Consensus 274 D~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDD--rRIHVDFSQS 318 (479)
T KOG0415|consen 274 DRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDD--RRIHVDFSQS 318 (479)
T ss_pred cccccchhheeeeeecchhhHHHHHhhhcceeecc--ceEEeehhhh
Confidence 78899999999999999999999999999988854 6688888654
No 81
>KOG0124|consensus
Probab=94.70 E-value=0.041 Score=43.27 Aligned_cols=43 Identities=19% Similarity=0.123 Sum_probs=35.3
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEec
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFA 46 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA 46 (83)
++.++..|||||++|.+...-.+||..||=..++| +-|+|--+
T Consensus 245 ~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGG--QyLRVGk~ 287 (544)
T KOG0124|consen 245 APTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGG--QYLRVGKC 287 (544)
T ss_pred cCCCCCccceeeEEeccccchHHHhhhcchhhccc--ceEecccc
Confidence 56678899999999999999999999999777766 44666543
No 82
>KOG0147|consensus
Probab=94.28 E-value=0.024 Score=45.71 Aligned_cols=44 Identities=18% Similarity=0.283 Sum_probs=37.7
Q ss_pred CCCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecC
Q psy6355 1 MKGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFAN 47 (83)
Q Consensus 1 ~Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~ 47 (83)
+|+.++.|||.+||.|.|.+.-..|| .|.|+.+.| .||.|....
T Consensus 213 ~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg--~pv~vq~sE 256 (549)
T KOG0147|consen 213 GDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLG--VPVIVQLSE 256 (549)
T ss_pred ccccchhhcceeEEEEecccchhhHh-hhcCCcccC--ceeEecccH
Confidence 58899999999999999999988888 799999866 678887543
No 83
>KOG1548|consensus
Probab=94.24 E-value=0.084 Score=40.83 Aligned_cols=39 Identities=21% Similarity=0.277 Sum_probs=33.0
Q ss_pred CccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecC
Q psy6355 7 FCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFAN 47 (83)
Q Consensus 7 ~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~ 47 (83)
-+.|++-|.|.+.++|+.||+.|+|..++| +.|..+..+
T Consensus 312 hPdGvvtV~f~n~eeA~~ciq~m~GR~fdg--Rql~A~i~D 350 (382)
T KOG1548|consen 312 HPDGVVTVSFRNNEEADQCIQTMDGRWFDG--RQLTASIWD 350 (382)
T ss_pred CCCceeEEEeCChHHHHHHHHHhcCeeecc--eEEEEEEeC
Confidence 467999999999999999999999999988 456665544
No 84
>KOG4661|consensus
Probab=94.15 E-value=0.068 Score=44.13 Aligned_cols=39 Identities=31% Similarity=0.468 Sum_probs=33.6
Q ss_pred ccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCC
Q psy6355 8 CRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANS 48 (83)
Q Consensus 8 SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~ 48 (83)
-|.||||.+.+..+|.+||+.||.+.+.|. -|.|.-+..
T Consensus 446 aRCYGfVTMSts~eAtkCI~hLHrTELHGr--mISVEkaKN 484 (940)
T KOG4661|consen 446 ARCYGFVTMSTSAEATKCIEHLHRTELHGR--MISVEKAKN 484 (940)
T ss_pred cceeEEEEecchHHHHHHHHHhhhhhhcce--eeeeeeccc
Confidence 467999999999999999999999999884 488876654
No 85
>KOG0120|consensus
Probab=94.05 E-value=0.11 Score=41.59 Aligned_cols=42 Identities=17% Similarity=0.245 Sum_probs=34.7
Q ss_pred CCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCC
Q psy6355 6 DFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSP 49 (83)
Q Consensus 6 G~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~ 49 (83)
...-|.=||+|.+.+++++|..+|+|.++.+ +.|..+|-+..
T Consensus 451 ~~G~GkVFVefas~ed~qrA~~~L~GrKF~n--RtVvtsYydeD 492 (500)
T KOG0120|consen 451 VPGTGKVFVEFADTEDSQRAMEELTGRKFAN--RTVVASYYDED 492 (500)
T ss_pred CCCcccEEEEecChHHHHHHHHHccCceeCC--cEEEEEecCHH
Confidence 3445778999999999999999999999966 66888876543
No 86
>KOG4205|consensus
Probab=93.65 E-value=0.03 Score=42.31 Aligned_cols=49 Identities=20% Similarity=0.156 Sum_probs=37.9
Q ss_pred CCCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCCC
Q psy6355 1 MKGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSS 52 (83)
Q Consensus 1 ~Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~~ 52 (83)
+|+.+..+|||+||.|.+.+..++++. ..-+.+.| +.+.|+-|.+....
T Consensus 131 ~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~g--k~vevkrA~pk~~~ 179 (311)
T KOG4205|consen 131 YDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNG--KKVEVKRAIPKEVM 179 (311)
T ss_pred ecccccccccceeeEeccccccceecc-cceeeecC--ceeeEeeccchhhc
Confidence 588999999999999999988887764 35556755 66888887765443
No 87
>KOG0153|consensus
Probab=93.42 E-value=0.15 Score=39.53 Aligned_cols=38 Identities=21% Similarity=0.369 Sum_probs=30.5
Q ss_pred cceEEEEeCCHHHHHHHHHHhCCCC-CCCCCcceEEEecCC
Q psy6355 9 RYLGFIRFDQRIEAERAIQELNGTI-PKGSNEPITVKFANS 48 (83)
Q Consensus 9 rG~gFV~F~~~e~A~~AI~~LnG~~-~~G~~~~l~V~fA~~ 48 (83)
+|||||.|.+++.|+.|.+..-... +.| ..|.|.+..+
T Consensus 264 ~~CAFv~ftTR~aAE~Aae~~~n~lvI~G--~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 264 KGCAFVTFTTREAAEKAAEKSFNKLVING--FRLKIKWGRP 302 (377)
T ss_pred cccceeeehhhHHHHHHHHhhcceeeecc--eEEEEEeCCC
Confidence 5799999999999999997764443 677 5588888766
No 88
>KOG1456|consensus
Probab=92.41 E-value=0.2 Score=39.50 Aligned_cols=41 Identities=24% Similarity=0.370 Sum_probs=34.6
Q ss_pred eEEEEeCCHHHHHHHHHHhCCCCC-CCCCcceEEEecCCCCCC
Q psy6355 11 LGFIRFDQRIEAERAIQELNGTIP-KGSNEPITVKFANSPSSS 52 (83)
Q Consensus 11 ~gFV~F~~~e~A~~AI~~LnG~~~-~G~~~~l~V~fA~~~~~~ 52 (83)
-|.|+|++.+.|++|-..|||..| .|+ =+|.|.||.+.+..
T Consensus 161 QAmVEFdsv~~AqrAk~alNGADIYsGC-CTLKIeyAkP~rln 202 (494)
T KOG1456|consen 161 QAMVEFDSVEVAQRAKAALNGADIYSGC-CTLKIEYAKPTRLN 202 (494)
T ss_pred eeEEeechhHHHHHHHhhcccccccccc-eeEEEEecCcceee
Confidence 389999999999999999999986 555 47899999876544
No 89
>KOG0106|consensus
Probab=91.49 E-value=0.12 Score=37.45 Aligned_cols=36 Identities=31% Similarity=0.588 Sum_probs=30.9
Q ss_pred ccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEe
Q psy6355 8 CRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKF 45 (83)
Q Consensus 8 SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~f 45 (83)
.++++||+|...++|.+|++.|+|..+.+ ..|.+..
T Consensus 132 ~~~~~~v~Fs~~~da~ra~~~l~~~~~~~--~~l~~~~ 167 (216)
T KOG0106|consen 132 RRNFAFVEFSEQEDAKRALEKLDGKKLNG--RRISVEK 167 (216)
T ss_pred hccccceeehhhhhhhhcchhccchhhcC--ceeeecc
Confidence 47899999999999999999999999966 4566643
No 90
>KOG4454|consensus
Probab=91.32 E-value=0.34 Score=35.77 Aligned_cols=39 Identities=13% Similarity=0.070 Sum_probs=32.9
Q ss_pred CCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEec
Q psy6355 5 TDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFA 46 (83)
Q Consensus 5 TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA 46 (83)
++..| |+||.|.+.-.-.-|++-|||-.+.+ .++++++-
T Consensus 46 d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~--~e~q~~~r 84 (267)
T KOG4454|consen 46 DQEQK-FAYVFFPNENSVQLAGQLENGDDLEE--DEEQRTLR 84 (267)
T ss_pred cCCCc-eeeeecccccchhhhhhhcccchhcc--chhhcccc
Confidence 45667 99999999999999999999999966 56777663
No 91
>KOG2202|consensus
Probab=89.69 E-value=0.34 Score=35.99 Aligned_cols=37 Identities=24% Similarity=0.421 Sum_probs=32.3
Q ss_pred cceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecC
Q psy6355 9 RYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFAN 47 (83)
Q Consensus 9 rG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~ 47 (83)
+|=.+|.|...++|++|++.||+.-+.| +||...|..
T Consensus 110 ~GNVYV~f~~Ee~ae~a~~~lnnRw~~G--~pi~ae~~p 146 (260)
T KOG2202|consen 110 VGNVYVKFRSEEDAEAALEDLNNRWYNG--RPIHAELSP 146 (260)
T ss_pred hhhhhhhcccHHHHHHHHHHHcCccccC--CcceeeecC
Confidence 4668999999999999999999999977 778887754
No 92
>KOG4660|consensus
Probab=88.94 E-value=0.28 Score=39.77 Aligned_cols=35 Identities=31% Similarity=0.267 Sum_probs=31.1
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCC
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKG 36 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G 36 (83)
++.|-..+|..||+|.|..+|+.|+++||+..+.|
T Consensus 105 ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~ 139 (549)
T KOG4660|consen 105 IRETPNKRGIVFVEFYDVRDAERALKALNRREIAG 139 (549)
T ss_pred hhcccccCceEEEEEeehHhHHHHHHHHHHHHhhh
Confidence 35566788999999999999999999999999865
No 93
>KOG4307|consensus
Probab=88.05 E-value=0.83 Score=38.58 Aligned_cols=39 Identities=21% Similarity=0.251 Sum_probs=32.4
Q ss_pred CCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEE
Q psy6355 4 FTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVK 44 (83)
Q Consensus 4 ~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~ 44 (83)
+.|..-|-|.|-|+++++|..|...|++++| .++.|.+.
T Consensus 904 d~G~pTGe~mvAfes~~eAr~A~~dl~~~~i--~nr~V~l~ 942 (944)
T KOG4307|consen 904 DDGVPTGECMVAFESQEEARRASMDLDGQKI--RNRVVSLR 942 (944)
T ss_pred CCCCcccceeEeecCHHHHHhhhhccccCcc--cceeEEEE
Confidence 3578889999999999999999999999999 44455543
No 94
>KOG4660|consensus
Probab=87.81 E-value=0.96 Score=36.75 Aligned_cols=48 Identities=15% Similarity=0.089 Sum_probs=36.7
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCC--CCCcceEEEecCCC
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPK--GSNEPITVKFANSP 49 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~--G~~~~l~V~fA~~~ 49 (83)
|-.+--..|||||.|.+++.+..+.+++||+..+ .+.+.+.+.||+-.
T Consensus 424 DF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~itYArIQ 473 (549)
T KOG4660|consen 424 DFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASITYARIQ 473 (549)
T ss_pred ccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeeehhhhh
Confidence 4444566899999999999999999999999741 24456667777643
No 95
>KOG2416|consensus
Probab=87.70 E-value=0.91 Score=37.58 Aligned_cols=41 Identities=10% Similarity=0.169 Sum_probs=35.2
Q ss_pred cceEEEEeCCHHHHHHHHHHhCCCCC-CCCCcceEEEecCCC
Q psy6355 9 RYLGFIRFDQRIEAERAIQELNGTIP-KGSNEPITVKFANSP 49 (83)
Q Consensus 9 rG~gFV~F~~~e~A~~AI~~LnG~~~-~G~~~~l~V~fA~~~ 49 (83)
|-.|||.|.+.++|.+-+.+|||.++ .+..+-|.+.|+...
T Consensus 481 KShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf~~~d 522 (718)
T KOG2416|consen 481 KSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADFVRAD 522 (718)
T ss_pred hcceeEecccHHHHHHHHHHHhccccCCCCCceeEeeecchh
Confidence 55799999999999999999999995 666788999997643
No 96
>KOG4849|consensus
Probab=87.53 E-value=1.1 Score=35.20 Aligned_cols=43 Identities=7% Similarity=0.212 Sum_probs=33.5
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEe
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKF 45 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~f 45 (83)
++..|+||||+.|...+.....+-++.|--+.+.|.+ |.+..+
T Consensus 117 NR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~-P~V~~~ 159 (498)
T KOG4849|consen 117 NRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQS-PTVLSY 159 (498)
T ss_pred cccCCcccceEEEEecchHHHHHHHHhcccceecCCC-Ceeecc
Confidence 4678999999999999988888888887777777753 444443
No 97
>KOG0151|consensus
Probab=87.19 E-value=0.7 Score=38.94 Aligned_cols=38 Identities=34% Similarity=0.517 Sum_probs=31.5
Q ss_pred CccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEec
Q psy6355 7 FCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFA 46 (83)
Q Consensus 7 ~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA 46 (83)
..+-||||.|-++.+|++|++.|+|..+.+ .++.+-|+
T Consensus 217 r~r~cgfvafmnR~D~era~k~lqg~iv~~--~e~K~gWg 254 (877)
T KOG0151|consen 217 RERNCGFVAFMNRADAERALKELQGIIVME--YEMKLGWG 254 (877)
T ss_pred cccccceeeehhhhhHHHHHHHhcceeeee--eeeeeccc
Confidence 456799999999999999999999998754 45666655
No 98
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=85.45 E-value=1.2 Score=34.83 Aligned_cols=33 Identities=21% Similarity=0.604 Sum_probs=28.6
Q ss_pred EEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecC
Q psy6355 13 FIRFDQRIEAERAIQELNGTIPKGSNEPITVKFAN 47 (83)
Q Consensus 13 FV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~ 47 (83)
||.|.+.++|.+||..++|..++| +-|...|..
T Consensus 169 YITy~~kedAarcIa~vDgs~~DG--r~lkatYGT 201 (480)
T COG5175 169 YITYSTKEDAARCIAEVDGSLLDG--RVLKATYGT 201 (480)
T ss_pred EEEecchHHHHHHHHHhccccccC--ceEeeecCc
Confidence 899999999999999999999988 457776644
No 99
>KOG4206|consensus
Probab=85.10 E-value=1.4 Score=32.06 Aligned_cols=38 Identities=24% Similarity=0.336 Sum_probs=32.0
Q ss_pred cceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecC
Q psy6355 9 RYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFAN 47 (83)
Q Consensus 9 rG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~ 47 (83)
+|.+||.|.+...|..|.+.+.|..+.- ...++|.|+.
T Consensus 183 ~~iAfve~~~d~~a~~a~~~lq~~~it~-~~~m~i~~a~ 220 (221)
T KOG4206|consen 183 SGIAFVEFLSDRQASAAQQALQGFKITK-KNTMQITFAK 220 (221)
T ss_pred CceeEEecchhhhhHHHhhhhccceecc-CceEEecccC
Confidence 5789999999999999999999998732 4678888875
No 100
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=83.39 E-value=1.4 Score=26.18 Aligned_cols=22 Identities=36% Similarity=0.602 Sum_probs=20.5
Q ss_pred EEEeCCHHHHHHHHHHhCCCCC
Q psy6355 13 FIRFDQRIEAERAIQELNGTIP 34 (83)
Q Consensus 13 FV~F~~~e~A~~AI~~LnG~~~ 34 (83)
||.|.+.++|++|.+..||..+
T Consensus 37 YIvF~~~~Ea~rC~~~~~~~~~ 58 (66)
T PF11767_consen 37 YIVFNDSKEAERCFRAEDGTLF 58 (66)
T ss_pred EEEECChHHHHHHHHhcCCCEE
Confidence 7999999999999999999875
No 101
>KOG1190|consensus
Probab=82.60 E-value=2.7 Score=33.57 Aligned_cols=38 Identities=18% Similarity=0.306 Sum_probs=33.2
Q ss_pred ceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCC
Q psy6355 10 YLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSP 49 (83)
Q Consensus 10 G~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~ 49 (83)
--|.|.|.|...|+-|++.|+|+++.| +.|+|.+....
T Consensus 336 d~ALIQmsd~~qAqLA~~hL~g~~l~g--k~lrvt~SKH~ 373 (492)
T KOG1190|consen 336 DNALIQMSDGQQAQLAMEHLEGHKLYG--KKLRVTLSKHT 373 (492)
T ss_pred cceeeeecchhHHHHHHHHhhcceecC--ceEEEeeccCc
Confidence 458999999999999999999999977 67999887654
No 102
>KOG1996|consensus
Probab=82.02 E-value=1.6 Score=33.50 Aligned_cols=38 Identities=26% Similarity=0.359 Sum_probs=30.9
Q ss_pred EEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCC
Q psy6355 12 GFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSS 51 (83)
Q Consensus 12 gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~ 51 (83)
-||.|...++|.+|+=.|||..++| +.+...|-+..+-
T Consensus 332 iFveF~r~e~aiKA~VdlnGRyFGG--r~v~A~Fyn~ekf 369 (378)
T KOG1996|consen 332 IFVEFERVESAIKAVVDLNGRYFGG--RVVSACFYNLEKF 369 (378)
T ss_pred eeeeeccHHHHHHHHHhcCCceecc--eeeeheeccHHhh
Confidence 5999999999999999999999988 4466666655433
No 103
>KOG4210|consensus
Probab=81.89 E-value=0.81 Score=34.03 Aligned_cols=45 Identities=9% Similarity=0.175 Sum_probs=36.6
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCC
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSP 49 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~ 49 (83)
++.+|.++|+++|.|.....+..++.. ....+.+ +++.+.+....
T Consensus 220 ~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~ 264 (285)
T KOG4210|consen 220 DEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGG--RPLRLEEDEPR 264 (285)
T ss_pred CCCccchhhhhhhhhhhchhHHHHhhc-ccCcccC--cccccccCCCC
Confidence 567899999999999999999988876 5666744 67888887654
No 104
>KOG1548|consensus
Probab=81.80 E-value=2.2 Score=33.26 Aligned_cols=41 Identities=20% Similarity=0.152 Sum_probs=36.6
Q ss_pred CCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecC
Q psy6355 5 TDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFAN 47 (83)
Q Consensus 5 TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~ 47 (83)
.|.-||-|.+.|-.+++-+-||+.|++..+.| ..|+|.-|.
T Consensus 179 ~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg--~~~rVerAk 219 (382)
T KOG1548|consen 179 QGKLKGDALCCYIKRESVELAIKILDEDELRG--KKLRVERAK 219 (382)
T ss_pred CCCccCceEEEeecccHHHHHHHHhCcccccC--cEEEEehhh
Confidence 48889999999999999999999999999966 568888765
No 105
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=81.45 E-value=3.1 Score=30.31 Aligned_cols=37 Identities=27% Similarity=0.365 Sum_probs=28.0
Q ss_pred EEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCCC
Q psy6355 12 GFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSS 52 (83)
Q Consensus 12 gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~~ 52 (83)
|||.|++..+|..|.+.+..... ..+.++.|..|..-
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~----~~~~v~~APeP~DI 37 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRP----NSWRVSPAPEPDDI 37 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCC----CCceEeeCCCcccc
Confidence 79999999999999997766554 33577777666443
No 106
>KOG4211|consensus
Probab=80.99 E-value=2.5 Score=34.09 Aligned_cols=42 Identities=14% Similarity=0.117 Sum_probs=32.4
Q ss_pred CCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecC
Q psy6355 3 GFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFAN 47 (83)
Q Consensus 3 k~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~ 47 (83)
+.+|+..|-|||+|.+.++.++|++. |...+ ..+=|.|--+.
T Consensus 43 r~~Gr~sGeA~Ve~~seedv~~Alkk-dR~~m--g~RYIEVf~~~ 84 (510)
T KOG4211|consen 43 RRNGRPSGEAYVEFTSEEDVEKALKK-DRESM--GHRYIEVFTAG 84 (510)
T ss_pred ccCCCcCcceEEEeechHHHHHHHHh-hHHHh--CCceEEEEccC
Confidence 56799999999999999999999864 65555 34556665443
No 107
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=76.26 E-value=4.9 Score=23.66 Aligned_cols=33 Identities=30% Similarity=0.502 Sum_probs=18.6
Q ss_pred eEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEec
Q psy6355 11 LGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFA 46 (83)
Q Consensus 11 ~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA 46 (83)
|.||.-.. +.|+.+++.|++..+.| +++.|+.|
T Consensus 42 ~S~vev~~-~~a~~v~~~l~~~~~~g--k~v~ve~A 74 (74)
T PF03880_consen 42 FSFVEVPE-EVAEKVLEALNGKKIKG--KKVRVERA 74 (74)
T ss_dssp -EEEEE-T-T-HHHHHHHHTT--SSS------EEE-
T ss_pred EEEEEECH-HHHHHHHHHhcCCCCCC--eeEEEEEC
Confidence 56776655 57999999999999977 56887754
No 108
>KOG4211|consensus
Probab=75.22 E-value=3.9 Score=33.01 Aligned_cols=37 Identities=19% Similarity=0.123 Sum_probs=26.7
Q ss_pred CCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEE
Q psy6355 5 TDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVK 44 (83)
Q Consensus 5 TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~ 44 (83)
.|++-|-|||.|.+.+.|++|+.. |...| ..+=|.|-
T Consensus 141 rgR~tGEAfVqF~sqe~ae~Al~r-hre~i--GhRYIEvF 177 (510)
T KOG4211|consen 141 RGRPTGEAFVQFESQESAEIALGR-HRENI--GHRYIEVF 177 (510)
T ss_pred CCCcccceEEEecCHHHHHHHHHH-HHHhh--ccceEEee
Confidence 467889999999999999999864 44445 23445553
No 109
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=73.81 E-value=3.8 Score=26.04 Aligned_cols=22 Identities=27% Similarity=0.608 Sum_probs=15.9
Q ss_pred eEEEEeCCHHHHHHHHHHhCCC
Q psy6355 11 LGFIRFDQRIEAERAIQELNGT 32 (83)
Q Consensus 11 ~gFV~F~~~e~A~~AI~~LnG~ 32 (83)
-|+|+|.+.+.|+.|+..+.-.
T Consensus 39 ~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 39 EGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp EEEEEESS---HHHHHHHHHHT
T ss_pred EEEEEECCcchHHHHHHHHHhc
Confidence 5899999999999999887544
No 110
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=73.55 E-value=3.6 Score=26.23 Aligned_cols=38 Identities=37% Similarity=0.428 Sum_probs=28.5
Q ss_pred ccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecC
Q psy6355 8 CRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFAN 47 (83)
Q Consensus 8 SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~ 47 (83)
...|-.|.|.++.+|.+|+.. ||..+.|.. -+.|.+.+
T Consensus 53 ~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~-mvGV~~~~ 90 (100)
T PF05172_consen 53 GGNWIHITYDNPLSAQRALQK-NGTIFSGSL-MVGVKPCD 90 (100)
T ss_dssp CTTEEEEEESSHHHHHHHHTT-TTEEETTCE-EEEEEE-H
T ss_pred CCCEEEEECCCHHHHHHHHHh-CCeEEcCcE-EEEEEEcH
Confidence 346889999999999999976 999986642 24566653
No 111
>KOG2193|consensus
Probab=68.29 E-value=2.7 Score=33.83 Aligned_cols=39 Identities=21% Similarity=0.316 Sum_probs=31.7
Q ss_pred cceEEEEeCCHHHHHHHHHHhCCCC-CCCCCcceEEEecCCC
Q psy6355 9 RYLGFIRFDQRIEAERAIQELNGTI-PKGSNEPITVKFANSP 49 (83)
Q Consensus 9 rG~gFV~F~~~e~A~~AI~~LnG~~-~~G~~~~l~V~fA~~~ 49 (83)
-||+||.+.+..-|.+||+.++|+. +.| ..+.|...-+.
T Consensus 37 ~gyafvd~pdq~wa~kaie~~sgk~elqG--kr~e~~~sv~k 76 (584)
T KOG2193|consen 37 SGYAFVDCPDQQWANKAIETLSGKVELQG--KRQEVEHSVPK 76 (584)
T ss_pred cceeeccCCchhhhhhhHHhhchhhhhcC--ceeeccchhhH
Confidence 4899999999999999999999996 777 45666654443
No 112
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=64.00 E-value=6.8 Score=21.85 Aligned_cols=19 Identities=21% Similarity=0.525 Sum_probs=16.3
Q ss_pred ccceEEEEeCCHHHHHHHH
Q psy6355 8 CRYLGFIRFDQRIEAERAI 26 (83)
Q Consensus 8 SrG~gFV~F~~~e~A~~AI 26 (83)
..-+.+|+|.++.+|++|+
T Consensus 35 ~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 35 STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred CCcEEEEEECCHHHHHhhC
Confidence 4558999999999999884
No 113
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=63.69 E-value=8.8 Score=26.25 Aligned_cols=37 Identities=16% Similarity=0.318 Sum_probs=27.0
Q ss_pred ceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCC
Q psy6355 10 YLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSP 49 (83)
Q Consensus 10 G~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~ 49 (83)
+.=+|.|.+-+.|-+|+. |+|.++.| +.|.|+.-.+.
T Consensus 71 ~~mwVTF~dg~sALaals-~dg~~v~g--~~l~i~LKtpd 107 (146)
T PF08952_consen 71 DTMWVTFRDGQSALAALS-LDGIQVNG--RTLKIRLKTPD 107 (146)
T ss_dssp TCEEEEESSCHHHHHHHH-GCCSEETT--EEEEEEE----
T ss_pred CeEEEEECccHHHHHHHc-cCCcEECC--EEEEEEeCCcc
Confidence 456799999999999975 79999966 56888765543
No 114
>KOG0116|consensus
Probab=63.67 E-value=8 Score=30.51 Aligned_cols=37 Identities=19% Similarity=0.307 Sum_probs=27.5
Q ss_pred CCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEe
Q psy6355 6 DFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKF 45 (83)
Q Consensus 6 G~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~f 45 (83)
+.+..||||.|.+.+++..||++ +-..+.+ +.|.|+-
T Consensus 327 ~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~--~kl~Vee 363 (419)
T KOG0116|consen 327 GKNPCFGFVEFENAAAVQNAIEA-SPLEIGG--RKLNVEE 363 (419)
T ss_pred CCcCceEEEEEeecchhhhhhhc-CccccCC--eeEEEEe
Confidence 44448999999999999999987 5434555 4577764
No 115
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=61.52 E-value=41 Score=21.66 Aligned_cols=28 Identities=29% Similarity=0.425 Sum_probs=25.0
Q ss_pred CccceEEEEeCCHHHHHHHHHHhCCCCC
Q psy6355 7 FCRYLGFIRFDQRIEAERAIQELNGTIP 34 (83)
Q Consensus 7 ~SrG~gFV~F~~~e~A~~AI~~LnG~~~ 34 (83)
.++=...++|.+.+.|++-.+.+||+.+
T Consensus 52 pnrymVLikF~~~~~Ad~Fy~~fNGk~F 79 (110)
T PF07576_consen 52 PNRYMVLIKFRDQESADEFYEEFNGKPF 79 (110)
T ss_pred CceEEEEEEECCHHHHHHHHHHhCCCcc
Confidence 3566789999999999999999999986
No 116
>KOG0112|consensus
Probab=61.27 E-value=5.9 Score=34.23 Aligned_cols=41 Identities=20% Similarity=0.456 Sum_probs=37.5
Q ss_pred eEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCC
Q psy6355 11 LGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSS 51 (83)
Q Consensus 11 ~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~ 51 (83)
|++|.|.+...+..|+..|-|..+++-.+.+.|.||..+..
T Consensus 493 yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~~~~ 533 (975)
T KOG0112|consen 493 YAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLASPPGA 533 (975)
T ss_pred ceeeecccCccchhhHHHHhcCcCCCCCcccccccccCCCC
Confidence 99999999999999999999999988888999999987643
No 117
>KOG1457|consensus
Probab=59.80 E-value=5.1 Score=29.85 Aligned_cols=25 Identities=24% Similarity=0.446 Sum_probs=22.0
Q ss_pred ceEEEEeCCHHHHHHHHHHhCCCCC
Q psy6355 10 YLGFIRFDQRIEAERAIQELNGTIP 34 (83)
Q Consensus 10 G~gFV~F~~~e~A~~AI~~LnG~~~ 34 (83)
-++|+.|++.+.|..|+..|.|-.+
T Consensus 249 ~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 249 PVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred ceEeecHHHHHHHHHHHHHhhccee
Confidence 3799999999999999999998876
No 118
>KOG1190|consensus
Probab=57.33 E-value=14 Score=29.70 Aligned_cols=40 Identities=20% Similarity=0.258 Sum_probs=32.8
Q ss_pred CccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecC
Q psy6355 7 FCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFAN 47 (83)
Q Consensus 7 ~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~ 47 (83)
..+-++.+.+.+.|+|..|+-.||.+.+. ....|+|+|..
T Consensus 450 kd~kmal~q~~sveeA~~ali~~hnh~lg-en~hlRvSFSk 489 (492)
T KOG1190|consen 450 KDRKMALPQLESVEEAIQALIDLHNHYLG-ENHHLRVSFSK 489 (492)
T ss_pred CCcceeecccCChhHhhhhccccccccCC-CCceEEEEeec
Confidence 45568899999999999999999998884 33579999974
No 119
>KOG4307|consensus
Probab=53.58 E-value=8.6 Score=32.79 Aligned_cols=28 Identities=21% Similarity=0.264 Sum_probs=23.0
Q ss_pred ccceEEEEeCCHHHHHHHHHHhCCCCCCC
Q psy6355 8 CRYLGFIRFDQRIEAERAIQELNGTIPKG 36 (83)
Q Consensus 8 SrG~gFV~F~~~e~A~~AI~~LnG~~~~G 36 (83)
-.|-+||.|.+-|+|+-|+.. ++.+|.|
T Consensus 39 e~GeaFI~FsTDeDARlaM~k-dr~~i~g 66 (944)
T KOG4307|consen 39 EEGEAFIGFSTDEDARLAMTK-DRLMIHG 66 (944)
T ss_pred cccceEEEecccchhhhhhhh-cccceec
Confidence 457899999999999999855 6667766
No 120
>KOG4285|consensus
Probab=53.57 E-value=14 Score=28.48 Aligned_cols=40 Identities=35% Similarity=0.385 Sum_probs=29.6
Q ss_pred CCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEe
Q psy6355 4 FTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKF 45 (83)
Q Consensus 4 ~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~f 45 (83)
.++..--|=.|+|..+.+|++|+.. ||++|+|.. -|-|+-
T Consensus 227 v~~~ngNwMhirYssr~~A~KALsk-ng~ii~g~v-miGVkp 266 (350)
T KOG4285|consen 227 VTPSNGNWMHIRYSSRTHAQKALSK-NGTIIDGDV-MIGVKP 266 (350)
T ss_pred ecCCCCceEEEEecchhHHHHhhhh-cCeeeccce-EEeeee
Confidence 3454556889999999999999976 999887642 233443
No 121
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=53.09 E-value=31 Score=24.40 Aligned_cols=41 Identities=17% Similarity=0.148 Sum_probs=28.6
Q ss_pred CCCCccceEEEEeCCHHHHHHHHHHhCC-CCCCCCCcceEEE
Q psy6355 4 FTDFCRYLGFIRFDQRIEAERAIQELNG-TIPKGSNEPITVK 44 (83)
Q Consensus 4 ~TG~SrG~gFV~F~~~e~A~~AI~~LnG-~~~~G~~~~l~V~ 44 (83)
.+|...|-|-+...+.++|.++++.+-. ..+......|.|+
T Consensus 45 adGla~GKGV~i~~~~~eA~~~l~~~~~~~~fg~~~~~vvIE 86 (194)
T PF01071_consen 45 ADGLAAGKGVVIADDREEALEALREIFVDRKFGDAGSKVVIE 86 (194)
T ss_dssp ESSSCTTTSEEEESSHHHHHHHHHHHHTSSTTCCCGSSEEEE
T ss_pred cCCCCCCCEEEEeCCHHHHHHHHHHhccccccCCCCCcEEEE
Confidence 4677777788888999999999988743 3443333455554
No 122
>KOG1456|consensus
Probab=52.75 E-value=23 Score=28.27 Aligned_cols=36 Identities=19% Similarity=0.255 Sum_probs=29.6
Q ss_pred cceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEec
Q psy6355 9 RYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFA 46 (83)
Q Consensus 9 rG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA 46 (83)
.|-|.|++.+..+-++|+..||+..+-|.+ |.|.+.
T Consensus 325 ~gtamVemgd~~aver~v~hLnn~~lfG~k--l~v~~S 360 (494)
T KOG1456|consen 325 PGTAMVEMGDAYAVERAVTHLNNIPLFGGK--LNVCVS 360 (494)
T ss_pred cceeEEEcCcHHHHHHHHHHhccCccccce--EEEeec
Confidence 478999999999999999999999876644 555543
No 123
>KOG1365|consensus
Probab=50.24 E-value=23 Score=28.40 Aligned_cols=25 Identities=16% Similarity=0.052 Sum_probs=22.4
Q ss_pred CCCCccceEEEEeCCHHHHHHHHHH
Q psy6355 4 FTDFCRYLGFIRFDQRIEAERAIQE 28 (83)
Q Consensus 4 ~TG~SrG~gFV~F~~~e~A~~AI~~ 28 (83)
-+|+.-|-|||.|...++|+.|+..
T Consensus 201 pdgrpTGdAFvlfa~ee~aq~aL~k 225 (508)
T KOG1365|consen 201 PDGRPTGDAFVLFACEEDAQFALRK 225 (508)
T ss_pred CCCCcccceEEEecCHHHHHHHHHH
Confidence 4688899999999999999999865
No 124
>KOG0128|consensus
Probab=48.86 E-value=8.2 Score=33.14 Aligned_cols=46 Identities=9% Similarity=0.097 Sum_probs=34.9
Q ss_pred CCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCCC
Q psy6355 5 TDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSS 52 (83)
Q Consensus 5 TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~~ 52 (83)
.|..+|.+||.|.+..++..++..++...+ ....+.|...+++..+
T Consensus 773 ~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~--rE~~~~v~vsnp~~~K 818 (881)
T KOG0128|consen 773 AGKPKGKARVDYNTEADASRKVASVDVAGK--RENNGEVQVSNPERDK 818 (881)
T ss_pred ccccccceeccCCCcchhhhhcccchhhhh--hhcCccccccCCcccc
Confidence 488999999999999999999988887766 3344556665555444
No 125
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=44.50 E-value=18 Score=20.28 Aligned_cols=12 Identities=25% Similarity=0.379 Sum_probs=9.2
Q ss_pred CccceEEEEeCC
Q psy6355 7 FCRYLGFIRFDQ 18 (83)
Q Consensus 7 ~SrG~gFV~F~~ 18 (83)
.++|||||...+
T Consensus 6 ~~~GfGFv~~~~ 17 (58)
T PF08206_consen 6 HPKGFGFVIPDD 17 (58)
T ss_dssp -SSS-EEEEECT
T ss_pred EcCCCEEEEECC
Confidence 478999999998
No 126
>KOG2068|consensus
Probab=44.09 E-value=7.3 Score=29.91 Aligned_cols=35 Identities=17% Similarity=0.557 Sum_probs=28.0
Q ss_pred EEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCC
Q psy6355 12 GFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANS 48 (83)
Q Consensus 12 gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~ 48 (83)
++|.|...++|..||...+|..++|.. |...+..+
T Consensus 128 ~yITy~~~eda~rci~~v~g~~~dg~~--lka~~gtt 162 (327)
T KOG2068|consen 128 VYITYEEEEDADRCIDDVDGFVDDGRA--LKASLGTT 162 (327)
T ss_pred ccccccchHhhhhHHHHhhhHHhhhhh--hHHhhCCC
Confidence 789999999999999999999887743 55555443
No 127
>KOG1365|consensus
Probab=41.52 E-value=15 Score=29.41 Aligned_cols=30 Identities=17% Similarity=0.066 Sum_probs=25.6
Q ss_pred CCCccceEEEEeCCHHHHHHHHHHhCCCCC
Q psy6355 5 TDFCRYLGFIRFDQRIEAERAIQELNGTIP 34 (83)
Q Consensus 5 TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~ 34 (83)
.|+.-|-|||.|.+.+.|..|....+.+.+
T Consensus 320 qGrPSGeAFIqm~nae~a~aaaqk~hk~~m 349 (508)
T KOG1365|consen 320 QGRPSGEAFIQMRNAERARAAAQKCHKKLM 349 (508)
T ss_pred CCCcChhhhhhhhhhHHHHHHHHHHHHhhc
Confidence 477889999999999999999888776655
No 128
>PRK14998 cold shock-like protein CspD; Provisional
Probab=41.05 E-value=16 Score=21.77 Aligned_cols=12 Identities=25% Similarity=0.318 Sum_probs=9.9
Q ss_pred CccceEEEEeCC
Q psy6355 7 FCRYLGFIRFDQ 18 (83)
Q Consensus 7 ~SrG~gFV~F~~ 18 (83)
..||||||.=.+
T Consensus 11 ~~kGfGFI~~~~ 22 (73)
T PRK14998 11 NAKGFGFICPEG 22 (73)
T ss_pred CCCceEEEecCC
Confidence 569999998776
No 129
>PRK09937 stationary phase/starvation inducible regulatory protein CspD; Provisional
Probab=40.49 E-value=17 Score=21.73 Aligned_cols=12 Identities=25% Similarity=0.318 Sum_probs=9.6
Q ss_pred CccceEEEEeCC
Q psy6355 7 FCRYLGFIRFDQ 18 (83)
Q Consensus 7 ~SrG~gFV~F~~ 18 (83)
..||||||.-.+
T Consensus 11 ~~KGfGFI~~~~ 22 (74)
T PRK09937 11 NAKGFGFICPEG 22 (74)
T ss_pred CCCCeEEEeeCC
Confidence 569999997665
No 130
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=40.18 E-value=20 Score=25.05 Aligned_cols=36 Identities=31% Similarity=0.328 Sum_probs=24.9
Q ss_pred eEEEEeCCHHHHHHHHHHhC--CCCCCCCCcceEEEecCC
Q psy6355 11 LGFIRFDQRIEAERAIQELN--GTIPKGSNEPITVKFANS 48 (83)
Q Consensus 11 ~gFV~F~~~e~A~~AI~~Ln--G~~~~G~~~~l~V~fA~~ 48 (83)
--.|.|.+.+.|..|...|+ +..+.| ..+.|-|+..
T Consensus 33 Ri~v~f~~~~~A~~~r~~l~~~~~~~~g--~~l~~yf~~~ 70 (184)
T PF04847_consen 33 RIRVVFESPESAQRARQLLHWDGTSFNG--KRLRVYFGQP 70 (184)
T ss_dssp EEEEE-SSTTHHHHHHHTST--TSEETT--EE-EEE----
T ss_pred EEEEEeCCHHHHHHHHHHhcccccccCC--CceEEEEccc
Confidence 35789999999999999999 777766 4588888743
No 131
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=40.08 E-value=32 Score=20.16 Aligned_cols=18 Identities=28% Similarity=0.313 Sum_probs=15.5
Q ss_pred EEEEeCCHHHHHHHHHHh
Q psy6355 12 GFIRFDQRIEAERAIQEL 29 (83)
Q Consensus 12 gFV~F~~~e~A~~AI~~L 29 (83)
|=|.|.+.+.|.+|+..|
T Consensus 45 cNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 45 CNVVFKDEETAARALVAL 62 (62)
T ss_pred EEEEECCHHHHHHHHHcC
Confidence 568999999999998765
No 132
>KOG1855|consensus
Probab=39.25 E-value=12 Score=30.00 Aligned_cols=25 Identities=16% Similarity=0.240 Sum_probs=21.7
Q ss_pred cceEEEEeCCHHHHHHHHHHhCCCC
Q psy6355 9 RYLGFIRFDQRIEAERAIQELNGTI 33 (83)
Q Consensus 9 rG~gFV~F~~~e~A~~AI~~LnG~~ 33 (83)
+-||+|+|...+.|++|.+.||...
T Consensus 286 k~~AlvEye~~~~A~KA~e~~~~e~ 310 (484)
T KOG1855|consen 286 KECALVEYEEVEAARKARELLNPEQ 310 (484)
T ss_pred hhhhhhhhhhhHHHHHHHHhhchhh
Confidence 5689999999999999999886554
No 133
>TIGR02381 cspD cold shock domain protein CspD. This model represents what appears to be a phylogenetically distinct clade, containing E. coli CspD and related proteobacterial proteins within the larger family of cold shock domain proteins described by pfam model pfam00313. The gene symbol cspD may have been used idependently for other subfamilies of cold shock domain proteins, such as for B. subtilis CspD. These proteins typically are shorter than 70 amino acids. In E. coli, CspD is a stress response protein induced in stationary phase. This homodimer binds single-stranded DNA and appears to inhibit DNA replication.
Probab=38.58 E-value=20 Score=20.90 Aligned_cols=12 Identities=25% Similarity=0.318 Sum_probs=10.2
Q ss_pred CccceEEEEeCC
Q psy6355 7 FCRYLGFIRFDQ 18 (83)
Q Consensus 7 ~SrG~gFV~F~~ 18 (83)
..||||||.-.+
T Consensus 11 ~~kGfGFI~~~~ 22 (68)
T TIGR02381 11 NAKGFGFICPEG 22 (68)
T ss_pred CCCCeEEEecCC
Confidence 569999998877
No 134
>PRK09507 cspE cold shock protein CspE; Reviewed
Probab=38.26 E-value=19 Score=21.09 Aligned_cols=13 Identities=23% Similarity=0.337 Sum_probs=10.3
Q ss_pred CccceEEEEeCCH
Q psy6355 7 FCRYLGFIRFDQR 19 (83)
Q Consensus 7 ~SrG~gFV~F~~~ 19 (83)
..||||||.=.+-
T Consensus 13 ~~kGyGFI~~~~g 25 (69)
T PRK09507 13 ESKGFGFITPEDG 25 (69)
T ss_pred CCCCcEEEecCCC
Confidence 4689999987763
No 135
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=36.82 E-value=31 Score=23.73 Aligned_cols=38 Identities=24% Similarity=0.393 Sum_probs=28.9
Q ss_pred eEEEEeCCHHHHHHHHHHhCCCCC---CCCCcceEEEecCC
Q psy6355 11 LGFIRFDQRIEAERAIQELNGTIP---KGSNEPITVKFANS 48 (83)
Q Consensus 11 ~gFV~F~~~e~A~~AI~~LnG~~~---~G~~~~l~V~fA~~ 48 (83)
-|+|.|.+.++...-+..++|+.+ .|...+-.|.||--
T Consensus 57 RaYi~F~~~~~~~~F~~~~~g~~F~D~kg~~~~~~VE~Apy 97 (176)
T PF03467_consen 57 RAYINFKNPEDLLEFRDRFDGHVFVDSKGNEYPAVVEFAPY 97 (176)
T ss_dssp EEEEEESSCHHHHHHHHHCTTEEEE-TTS-EEEEEEEE-SS
T ss_pred EEEEEeCCHHHHHHHHHhcCCcEEECCCCCCcceeEEEcch
Confidence 489999999999999999999875 24445567888753
No 136
>PRK10943 cold shock-like protein CspC; Provisional
Probab=36.82 E-value=20 Score=20.98 Aligned_cols=12 Identities=25% Similarity=0.310 Sum_probs=9.9
Q ss_pred CccceEEEEeCC
Q psy6355 7 FCRYLGFIRFDQ 18 (83)
Q Consensus 7 ~SrG~gFV~F~~ 18 (83)
..||||||.=.+
T Consensus 13 ~~kGfGFI~~~~ 24 (69)
T PRK10943 13 ESKGFGFITPAD 24 (69)
T ss_pred CCCCcEEEecCC
Confidence 468999998766
No 137
>PF00313 CSD: 'Cold-shock' DNA-binding domain; InterPro: IPR002059 When Escherichia coli is exposed to a temperature drop from 37 to 10 degrees centigrade, a 4-5 hour lag phase occurs, after which growth is resumed at a reduced rate []. During the lag phase, the expression of around 13 proteins, which contain specific DNA-binding regions [], is increased 2-10 fold. These so-called 'cold shock' proteins are thought to help the cell to survive in temperatures lower than optimum growth temperature, by contrast with heat shock proteins, which help the cell to survive in temperatures greater than the optimum, possibly by condensation of the chromosome and organisation of the prokaryotic nucleoid []. A conserved domain of about 70 amino acids has been found in prokaryotic and eukaryotic DNA-binding proteins [, , ]. This domain is known as the 'cold-shock domain' (CSD), part of which is highly similar [] to the RNP-1 RNA-binding motif.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1HZC_A 1I5F_A 1HZ9_B 1C9O_B 1HZB_B 1HZA_A 2HAX_B 2L15_A 2LSS_A 3I2Z_B ....
Probab=35.88 E-value=31 Score=19.35 Aligned_cols=14 Identities=29% Similarity=0.142 Sum_probs=11.0
Q ss_pred CccceEEEEeCCHH
Q psy6355 7 FCRYLGFIRFDQRI 20 (83)
Q Consensus 7 ~SrG~gFV~F~~~e 20 (83)
..+|||||.-.+.+
T Consensus 10 ~~kgyGFI~~~~~~ 23 (66)
T PF00313_consen 10 DEKGYGFITSDDGG 23 (66)
T ss_dssp TTTTEEEEEETTSS
T ss_pred CCCCceEEEEcccc
Confidence 35899999998743
No 138
>KOG3152|consensus
Probab=33.99 E-value=12 Score=28.10 Aligned_cols=27 Identities=30% Similarity=0.409 Sum_probs=23.8
Q ss_pred EEEEeCCHHHHHHHHHHhCCCCCCCCC
Q psy6355 12 GFIRFDQRIEAERAIQELNGTIPKGSN 38 (83)
Q Consensus 12 gFV~F~~~e~A~~AI~~LnG~~~~G~~ 38 (83)
|.|.|.+...|......||+..|+|..
T Consensus 131 GWvEF~~KrvAK~iAe~Lnn~~Iggkk 157 (278)
T KOG3152|consen 131 GWVEFISKRVAKRIAELLNNTPIGGKK 157 (278)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccCCCC
Confidence 668999999999999999999997643
No 139
>PRK15463 cold shock-like protein CspF; Provisional
Probab=33.64 E-value=23 Score=20.86 Aligned_cols=12 Identities=17% Similarity=-0.117 Sum_probs=9.8
Q ss_pred CccceEEEEeCC
Q psy6355 7 FCRYLGFIRFDQ 18 (83)
Q Consensus 7 ~SrG~gFV~F~~ 18 (83)
..||||||.=.+
T Consensus 14 ~~kGfGFI~~~~ 25 (70)
T PRK15463 14 GKSGKGLITPSD 25 (70)
T ss_pred CCCceEEEecCC
Confidence 458999998766
No 140
>PRK10354 RNA chaperone/anti-terminator; Provisional
Probab=33.05 E-value=24 Score=20.60 Aligned_cols=12 Identities=33% Similarity=0.401 Sum_probs=9.5
Q ss_pred CccceEEEEeCC
Q psy6355 7 FCRYLGFIRFDQ 18 (83)
Q Consensus 7 ~SrG~gFV~F~~ 18 (83)
..||||||.=.+
T Consensus 14 ~~kGfGFI~~~~ 25 (70)
T PRK10354 14 ADKGFGFITPDD 25 (70)
T ss_pred CCCCcEEEecCC
Confidence 358999998665
No 141
>PRK09890 cold shock protein CspG; Provisional
Probab=31.99 E-value=26 Score=20.55 Aligned_cols=12 Identities=33% Similarity=0.401 Sum_probs=9.8
Q ss_pred CccceEEEEeCC
Q psy6355 7 FCRYLGFIRFDQ 18 (83)
Q Consensus 7 ~SrG~gFV~F~~ 18 (83)
..||||||.=.+
T Consensus 14 ~~kGfGFI~~~~ 25 (70)
T PRK09890 14 ADKGFGFITPDD 25 (70)
T ss_pred CCCCcEEEecCC
Confidence 358999998876
No 142
>KOG0128|consensus
Probab=31.90 E-value=21 Score=30.84 Aligned_cols=31 Identities=13% Similarity=0.022 Sum_probs=25.8
Q ss_pred CCCCccceEEEEeCCHHHHHHHHHHhCCCCC
Q psy6355 4 FTDFCRYLGFIRFDQRIEAERAIQELNGTIP 34 (83)
Q Consensus 4 ~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~ 34 (83)
.+++-||+|+|.|.+.+.+.+||...+++.+
T Consensus 704 n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~ 734 (881)
T KOG0128|consen 704 NEKRFRGKAYVEFLKPEHAGAAVAFRDSCFF 734 (881)
T ss_pred hccccccceeeEeecCCchhhhhhhhhhhhh
Confidence 4678899999999999999999976655444
No 143
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=30.85 E-value=1e+02 Score=21.49 Aligned_cols=35 Identities=17% Similarity=0.343 Sum_probs=25.9
Q ss_pred cceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEec
Q psy6355 9 RYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFA 46 (83)
Q Consensus 9 rG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA 46 (83)
|--|.|.|.|..+|-+|+.++....+ |. -+++++-
T Consensus 125 rqsavVvF~d~~SAC~Av~Af~s~~p-gt--m~qCsWq 159 (166)
T PF15023_consen 125 RQSAVVVFKDITSACKAVSAFQSRAP-GT--MFQCSWQ 159 (166)
T ss_pred CceEEEEehhhHHHHHHHHhhcCCCC-Cc--eEEeecc
Confidence 33589999999999999999877444 43 3666653
No 144
>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain
Probab=30.80 E-value=43 Score=17.79 Aligned_cols=28 Identities=21% Similarity=0.172 Sum_probs=19.1
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHh
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQEL 29 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~L 29 (83)
|+.||..+=..--.|.+..+|+++...+
T Consensus 10 ~~~~Gkrk~~~k~GF~TkkeA~~~~~~~ 37 (46)
T PF14657_consen 10 DDETGKRKQKTKRGFKTKKEAEKALAKI 37 (46)
T ss_pred ECCCCCEEEEEcCCCCcHHHHHHHHHHH
Confidence 4456655544444588999999887665
No 145
>KOG0105|consensus
Probab=29.31 E-value=1e+02 Score=22.48 Aligned_cols=36 Identities=17% Similarity=0.331 Sum_probs=27.7
Q ss_pred cceEEEEeCCHHHHHHHHHHhCCCCC--CCCCcceEEE
Q psy6355 9 RYLGFIRFDQRIEAERAIQELNGTIP--KGSNEPITVK 44 (83)
Q Consensus 9 rG~gFV~F~~~e~A~~AI~~LnG~~~--~G~~~~l~V~ 44 (83)
-|++.|.|...|+.+-||..|+.+++ +|...-|.|.
T Consensus 150 Dg~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~yirv~ 187 (241)
T KOG0105|consen 150 DGVGVVEYLRKEDMKYAVRKLDDQKFRSEGETAYIRVR 187 (241)
T ss_pred ccceeeeeeehhhHHHHHHhhccccccCcCcEeeEEec
Confidence 36899999999999999999998875 4543333343
No 146
>PRK15464 cold shock-like protein CspH; Provisional
Probab=29.12 E-value=34 Score=20.26 Aligned_cols=12 Identities=25% Similarity=0.016 Sum_probs=9.8
Q ss_pred CccceEEEEeCC
Q psy6355 7 FCRYLGFIRFDQ 18 (83)
Q Consensus 7 ~SrG~gFV~F~~ 18 (83)
..||||||.=.+
T Consensus 14 ~~KGfGFI~~~~ 25 (70)
T PRK15464 14 RKSGKGFIIPSD 25 (70)
T ss_pred CCCCeEEEccCC
Confidence 468999998776
No 147
>cd04458 CSP_CDS Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. CSP expression is up-regulated by an abrupt drop in growth temperature. CSP's are also expressed under normal condition at lower level. The function of cold-shock proteins is not fully understood. They preferentially bind poly-pyrimidine region of single-stranded RNA and DNA. CSP's are thought to bind mRNA and regulate ribosomal translation, mRNA degradation, and the rate of transcription termination. The human Y-box protein, which contains a CSD, regulates transcription and translation of genes that contain the Y-box sequence in their promoters. This specific ssDNA-binding properties of CSD are required for the binding of Y-box protein to the promoter's Y-box sequence, thereby regulating transcription.
Probab=28.52 E-value=35 Score=19.05 Aligned_cols=12 Identities=33% Similarity=0.346 Sum_probs=10.0
Q ss_pred CccceEEEEeCC
Q psy6355 7 FCRYLGFIRFDQ 18 (83)
Q Consensus 7 ~SrG~gFV~F~~ 18 (83)
..||||||.=.+
T Consensus 10 ~~kGfGFI~~~~ 21 (65)
T cd04458 10 DEKGFGFITPDD 21 (65)
T ss_pred CCCCeEEEecCC
Confidence 348999999887
No 148
>KOG1134|consensus
Probab=26.70 E-value=1.3e+02 Score=25.51 Aligned_cols=42 Identities=24% Similarity=0.227 Sum_probs=31.6
Q ss_pred CccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCCC
Q psy6355 7 FCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSS 52 (83)
Q Consensus 7 ~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~~ 52 (83)
+..+.|||.|.++-.|..|.+........ ...+.+|..|..-
T Consensus 303 ~~~~~aFVtf~sr~~A~~~aq~~~~~~~~----~w~~~~APeP~Di 344 (728)
T KOG1134|consen 303 KPLPAAFVTFKSRYGAAVAAQTQQSLNPT----KWLTEFAPEPRDI 344 (728)
T ss_pred CCCceEEEEEEeeHHHHHHHHhhhcCCCC----ceEEEecCCcccc
Confidence 45689999999999999998875554442 3578888777554
No 149
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=26.20 E-value=65 Score=25.03 Aligned_cols=25 Identities=20% Similarity=0.223 Sum_probs=23.0
Q ss_pred ccceEEEEeCCHHHHHHHHHHhCCC
Q psy6355 8 CRYLGFIRFDQRIEAERAIQELNGT 32 (83)
Q Consensus 8 SrG~gFV~F~~~e~A~~AI~~LnG~ 32 (83)
+-|.|||.....++++++++.|.+.
T Consensus 298 NmGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 298 NMGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred cCccceEEEEcHHHHHHHHHHHHhc
Confidence 5689999999999999999999876
No 150
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=21.88 E-value=1e+02 Score=20.58 Aligned_cols=26 Identities=12% Similarity=0.098 Sum_probs=22.0
Q ss_pred ccceEEEEeCCHHHHHHHHHHhCCCC
Q psy6355 8 CRYLGFIRFDQRIEAERAIQELNGTI 33 (83)
Q Consensus 8 SrG~gFV~F~~~e~A~~AI~~LnG~~ 33 (83)
-+||-||.....++...+|+.+.|-.
T Consensus 45 fpGYVfVe~~~~~~~~~~i~~v~~v~ 70 (153)
T PRK08559 45 LKGYVLVEAESKGAVEEAIRGIPHVR 70 (153)
T ss_pred CCcEEEEEEEChHHHHHHHhcCCCEe
Confidence 47999999998889999998887654
No 151
>KOG2318|consensus
Probab=21.29 E-value=1.5e+02 Score=24.91 Aligned_cols=37 Identities=19% Similarity=0.326 Sum_probs=29.7
Q ss_pred ceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEec
Q psy6355 10 YLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFA 46 (83)
Q Consensus 10 G~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA 46 (83)
-||.|.|.+.+.|.+..+.++|..++-...-|-++|-
T Consensus 269 YyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 269 YYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred EEEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 4799999999999999999999998554445556663
No 152
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=21.07 E-value=1.3e+02 Score=17.92 Aligned_cols=27 Identities=7% Similarity=0.116 Sum_probs=21.6
Q ss_pred CccceEEEEeCCHHHHHHHHHHhCCCC
Q psy6355 7 FCRYLGFIRFDQRIEAERAIQELNGTI 33 (83)
Q Consensus 7 ~SrG~gFV~F~~~e~A~~AI~~LnG~~ 33 (83)
.-+||=||+=.+..+..+|++.+.+-.
T Consensus 42 ~lkGyIyVEA~~~~~V~~ai~gi~~i~ 68 (84)
T PF03439_consen 42 SLKGYIYVEAERESDVKEAIRGIRHIR 68 (84)
T ss_dssp TSTSEEEEEESSHHHHHHHHTT-TTEE
T ss_pred CCceEEEEEeCCHHHHHHHHhccccee
Confidence 468999999999999999987766543
No 153
>KOG4574|consensus
Probab=20.43 E-value=74 Score=27.86 Aligned_cols=36 Identities=28% Similarity=0.458 Sum_probs=30.3
Q ss_pred eEEEEeCCHHHHHHHHHHhCCCCC--CCCCcceEEEecCC
Q psy6355 11 LGFIRFDQRIEAERAIQELNGTIP--KGSNEPITVKFANS 48 (83)
Q Consensus 11 ~gFV~F~~~e~A~~AI~~LnG~~~--~G~~~~l~V~fA~~ 48 (83)
.+.|.|...+.|-.|.+.|+|+.. .| -|.+|.||..
T Consensus 336 ~alvs~~s~~sai~a~dAl~gkevs~~g--~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 336 MALVSFSSVESAILALDALQGKEVSVTG--APSRVSFAKT 373 (1007)
T ss_pred chhhhhHHHHHHHHhhhhhcCCcccccC--CceeEEeccc
Confidence 478999999999999999999974 44 4688998864
Done!