Query psy6355
Match_columns 83
No_of_seqs 102 out of 1062
Neff 6.1
Searched_HMMs 29240
Date Sat Aug 17 00:19:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6355.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6355hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 99.3 1.2E-12 4.2E-17 80.9 4.6 45 2-48 54-98 (99)
2 3p5t_L Cleavage and polyadenyl 99.3 1.8E-12 6.1E-17 78.0 4.0 49 2-52 38-86 (90)
3 2lkz_A RNA-binding protein 5; 99.3 2.7E-12 9.3E-17 79.4 4.7 46 1-48 45-94 (95)
4 2lxi_A RNA-binding protein 10; 99.3 4.7E-12 1.6E-16 76.9 4.5 50 1-52 36-86 (91)
5 3s8s_A Histone-lysine N-methyl 99.3 4.6E-12 1.6E-16 79.8 4.6 50 1-52 40-89 (110)
6 2dnz_A Probable RNA-binding pr 99.2 3E-11 1E-15 72.6 7.2 49 2-52 40-88 (95)
7 1x5t_A Splicing factor 3B subu 99.2 2E-11 6.9E-16 73.5 5.8 49 2-52 41-89 (96)
8 2dgs_A DAZ-associated protein 99.2 4.5E-11 1.5E-15 72.5 6.9 49 1-52 44-92 (99)
9 2dgp_A Bruno-like 4, RNA bindi 99.2 5.1E-11 1.7E-15 73.0 7.1 51 2-52 48-99 (106)
10 2fc8_A NCL protein; structure 99.2 2.1E-11 7.3E-16 74.2 5.1 49 2-52 47-95 (102)
11 1x5u_A Splicing factor 3B subu 99.2 3.7E-11 1.3E-15 73.5 6.2 49 2-52 50-98 (105)
12 3md1_A Nuclear and cytoplasmic 99.2 2.6E-11 8.7E-16 71.1 5.3 46 2-49 36-81 (83)
13 1whw_A Hypothetical protein ri 99.2 3.6E-11 1.2E-15 72.8 6.1 49 2-52 43-91 (99)
14 2dnm_A SRP46 splicing factor; 99.2 2.6E-11 9E-16 74.0 5.5 49 2-52 48-96 (103)
15 2la6_A RNA-binding protein FUS 99.2 2.9E-11 9.8E-16 73.6 5.6 44 2-47 56-99 (99)
16 2fy1_A RNA-binding motif prote 99.2 5.2E-11 1.8E-15 75.1 7.0 48 2-52 42-89 (116)
17 2x1f_A MRNA 3'-END-processing 99.2 2.9E-11 9.8E-16 73.2 5.4 48 2-51 37-84 (96)
18 1x5s_A Cold-inducible RNA-bind 99.2 5.5E-11 1.9E-15 72.3 6.6 49 2-52 47-95 (102)
19 2cpe_A RNA-binding protein EWS 99.2 3.4E-11 1.2E-15 74.6 5.5 49 2-52 58-106 (113)
20 2dnh_A Bruno-like 5, RNA bindi 99.2 7.5E-11 2.6E-15 72.1 6.8 51 2-53 50-101 (105)
21 1p27_B RNA-binding protein 8A; 99.2 3.7E-11 1.3E-15 73.6 5.4 46 2-49 58-103 (106)
22 2cqb_A Peptidyl-prolyl CIS-tra 99.2 2.8E-11 9.5E-16 73.7 4.8 50 1-52 46-95 (102)
23 3bs9_A Nucleolysin TIA-1 isofo 99.2 2.8E-11 9.5E-16 71.5 4.5 45 2-48 41-85 (87)
24 3ns6_A Eukaryotic translation 99.2 2.9E-11 9.9E-16 74.3 4.7 46 2-48 47-92 (100)
25 2cq0_A Eukaryotic translation 99.2 4.8E-11 1.7E-15 72.8 5.5 49 2-52 50-98 (103)
26 2cqp_A RNA-binding protein 12; 99.2 3.5E-11 1.2E-15 72.8 4.7 47 2-50 50-96 (98)
27 2do4_A Squamous cell carcinoma 99.2 5.3E-11 1.8E-15 72.3 5.4 47 2-51 52-98 (100)
28 2kn4_A Immunoglobulin G-bindin 99.2 5.3E-11 1.8E-15 77.4 5.7 50 1-52 104-153 (158)
29 1fj7_A Nucleolin RBD1, protein 99.2 2.8E-11 9.7E-16 73.7 4.1 47 2-51 51-97 (101)
30 1oo0_B CG8781-PA, drosophila Y 99.1 3.9E-11 1.3E-15 74.1 4.7 48 2-51 61-108 (110)
31 2kxn_B Transformer-2 protein h 99.1 8.2E-11 2.8E-15 75.7 6.4 48 1-50 80-127 (129)
32 1x4h_A RNA-binding protein 28; 99.1 8E-11 2.7E-15 72.4 6.0 50 1-52 49-104 (111)
33 2cpz_A CUG triplet repeat RNA- 99.1 5.1E-11 1.7E-15 74.2 5.0 49 2-52 60-108 (115)
34 2dgo_A Cytotoxic granule-assoc 99.1 6.9E-11 2.4E-15 73.4 5.5 49 2-52 50-98 (115)
35 1p1t_A Cleavage stimulation fa 99.1 5.9E-11 2E-15 72.3 5.0 49 2-52 43-91 (104)
36 1x5o_A RNA binding motif, sing 99.1 1.3E-10 4.4E-15 72.1 6.6 47 2-49 60-112 (114)
37 2cph_A RNA binding motif prote 99.1 1.6E-10 5.6E-15 70.6 6.9 48 3-52 52-100 (107)
38 2ki2_A SS-DNA binding protein 99.1 5E-11 1.7E-15 71.1 4.4 48 1-51 35-82 (90)
39 2dhg_A TRNA selenocysteine ass 99.1 7.1E-11 2.4E-15 72.1 5.1 48 2-52 45-93 (104)
40 2m2b_A RNA-binding protein 10; 99.1 3.4E-11 1.2E-15 77.0 3.7 48 1-51 59-110 (131)
41 3n9u_C Cleavage and polyadenyl 99.1 4E-11 1.4E-15 79.7 4.2 47 1-49 91-137 (156)
42 2div_A TRNA selenocysteine ass 99.1 5.8E-11 2E-15 71.9 4.5 49 2-50 45-95 (99)
43 2e5h_A Zinc finger CCHC-type a 99.1 7.7E-11 2.6E-15 70.6 4.7 44 2-47 51-94 (94)
44 3ex7_B RNA-binding protein 8A; 99.1 1.2E-10 4.1E-15 73.4 5.8 49 2-52 57-105 (126)
45 2cqc_A Arginine/serine-rich sp 99.1 6.2E-11 2.1E-15 71.0 4.2 45 2-48 50-94 (95)
46 2dis_A Unnamed protein product 99.1 1.8E-10 6.3E-15 70.7 6.5 48 2-51 45-94 (109)
47 2dng_A Eukaryotic translation 99.1 7.5E-11 2.6E-15 72.1 4.7 48 2-52 49-96 (103)
48 2jrs_A RNA-binding protein 39; 99.1 1.1E-10 3.8E-15 72.8 5.5 46 2-49 61-106 (108)
49 3mdf_A Peptidyl-prolyl CIS-tra 99.1 6.4E-11 2.2E-15 69.7 4.2 44 2-47 42-85 (85)
50 2mss_A Protein (musashi1); RNA 99.1 9.4E-11 3.2E-15 67.7 4.8 42 2-46 34-75 (75)
51 1u6f_A Tcubp1, RNA-binding pro 99.1 8.1E-11 2.8E-15 75.3 4.8 49 2-52 77-125 (139)
52 2a3j_A U1 small nuclear ribonu 99.1 1.6E-10 5.6E-15 74.8 6.2 46 4-51 67-112 (127)
53 1wi8_A EIF-4B, eukaryotic tran 99.1 1.2E-10 4.3E-15 71.2 5.2 48 2-52 49-97 (104)
54 2ek1_A RNA-binding protein 12; 99.1 7.5E-11 2.6E-15 70.8 4.1 44 2-47 50-93 (95)
55 1fxl_A Paraneoplastic encephal 99.1 2E-10 6.7E-15 73.4 6.1 45 2-46 123-167 (167)
56 2j76_E EIF-4B, EIF4B, eukaryot 99.1 1.9E-10 6.5E-15 70.4 5.6 45 2-49 53-98 (100)
57 4a8x_A RNA-binding protein wit 99.1 8.1E-11 2.8E-15 69.5 3.7 48 2-51 39-87 (88)
58 1b7f_A Protein (SXL-lethal pro 99.1 2.5E-10 8.6E-15 73.3 6.1 45 2-46 124-168 (168)
59 2cpx_A Hypothetical protein FL 99.1 2.6E-10 8.9E-15 70.6 6.0 47 4-52 62-108 (115)
60 2d9p_A Polyadenylate-binding p 99.1 3.2E-10 1.1E-14 69.1 6.1 46 5-52 51-96 (103)
61 2hvz_A Splicing factor, argini 99.0 4.3E-10 1.5E-14 68.4 6.0 66 8-79 36-101 (101)
62 2pe8_A Splicing factor 45; RRM 99.0 2.5E-10 8.6E-15 71.6 5.0 42 5-48 52-93 (105)
63 3ulh_A THO complex subunit 4; 99.0 1.7E-10 5.7E-15 70.7 4.1 43 2-47 64-106 (107)
64 2lea_A Serine/arginine-rich sp 99.0 3.2E-10 1.1E-14 73.4 5.6 48 2-51 82-129 (135)
65 2dgw_A Probable RNA-binding pr 99.0 1.8E-10 6.2E-15 68.8 4.1 44 4-50 45-88 (91)
66 2dgv_A HnRNP M, heterogeneous 99.0 3.3E-10 1.1E-14 67.5 5.2 46 4-51 43-88 (92)
67 3ucg_A Polyadenylate-binding p 99.0 2.1E-10 7.2E-15 67.9 4.2 45 2-49 41-85 (89)
68 2krb_A Eukaryotic translation 99.0 1.4E-10 4.7E-15 68.3 3.4 40 3-43 41-80 (81)
69 2kt5_A RNA and export factor-b 99.0 3.8E-10 1.3E-14 71.1 5.7 47 2-51 70-116 (124)
70 2fc9_A NCL protein; structure 99.0 3.3E-10 1.1E-14 68.9 5.2 46 4-51 48-93 (101)
71 2do0_A HnRNP M, heterogeneous 99.0 3.9E-10 1.3E-14 69.8 5.5 48 2-52 50-97 (114)
72 2nlw_A Eukaryotic translation 99.0 2E-10 6.7E-15 71.0 4.1 45 3-49 55-100 (105)
73 2cpf_A RNA binding motif prote 99.0 1.4E-10 4.7E-15 70.1 3.2 46 5-52 46-91 (98)
74 2khc_A Testis-specific RNP-typ 99.0 1.3E-10 4.3E-15 72.5 3.1 43 2-46 75-117 (118)
75 1h2v_Z 20 kDa nuclear CAP bind 99.0 3.1E-10 1.1E-14 74.0 5.1 49 2-52 74-122 (156)
76 2jwn_A Embryonic polyadenylate 99.0 3.4E-10 1.2E-14 71.1 5.0 48 2-52 71-118 (124)
77 2wbr_A GW182, gawky, LD47780P; 99.0 1.9E-10 6.5E-15 71.7 3.7 39 7-47 41-79 (89)
78 3md3_A Nuclear and cytoplasmic 99.0 3.1E-10 1.1E-14 72.4 4.9 45 2-48 122-166 (166)
79 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.0 2.1E-10 7.2E-15 72.8 4.0 44 1-46 97-140 (140)
80 2e5j_A Methenyltetrahydrofolat 99.0 5.3E-10 1.8E-14 67.7 5.5 44 5-50 52-95 (97)
81 2cpi_A CCR4-NOT transcription 99.0 5E-10 1.7E-14 69.7 5.3 43 6-50 60-102 (111)
82 2rs2_A Musashi-1, RNA-binding 99.0 4.4E-10 1.5E-14 70.0 5.0 49 1-52 59-107 (109)
83 2qfj_A FBP-interacting repress 99.0 7.9E-10 2.7E-14 73.7 6.5 49 2-52 160-208 (216)
84 1uaw_A Mouse-musashi-1; RNP-ty 99.0 4E-10 1.4E-14 65.1 4.3 42 2-46 35-76 (77)
85 3q2s_C Cleavage and polyadenyl 99.0 2.1E-10 7.2E-15 80.2 3.5 47 1-49 104-150 (229)
86 4f25_A Polyadenylate-binding p 99.0 4.2E-10 1.4E-14 70.5 4.5 45 6-52 42-86 (115)
87 2cqi_A Nucleolysin TIAR; RNA r 99.0 8E-10 2.7E-14 67.4 5.6 46 6-53 52-97 (103)
88 1fjc_A Nucleolin RBD2, protein 99.0 3E-10 1E-14 68.4 3.6 46 4-51 48-93 (96)
89 2lcw_A RNA-binding protein FUS 98.5 4.8E-11 1.6E-15 74.5 0.0 49 2-52 50-98 (116)
90 3nmr_A Cugbp ELAV-like family 99.0 7.9E-10 2.7E-14 71.2 5.8 43 5-47 132-175 (175)
91 1rk8_A CG8781-PA, CG8781-PA pr 99.0 3.7E-10 1.3E-14 74.6 4.2 49 2-52 107-155 (165)
92 2dgx_A KIAA0430 protein; RRM d 99.0 6.8E-10 2.3E-14 67.4 5.0 40 9-50 52-91 (96)
93 2cqd_A RNA-binding region cont 99.0 5.9E-10 2E-14 69.4 4.8 46 1-49 51-96 (116)
94 1jmt_A Splicing factor U2AF 35 99.0 5.1E-10 1.7E-14 69.9 4.4 40 5-46 64-103 (104)
95 2ywk_A Putative RNA-binding pr 99.0 4.4E-10 1.5E-14 67.3 3.9 44 2-48 51-94 (95)
96 1x4e_A RNA binding motif, sing 99.0 1.7E-10 5.9E-15 68.1 2.1 44 1-46 39-82 (85)
97 1wel_A RNA-binding protein 12; 99.0 3.3E-10 1.1E-14 71.7 3.3 44 2-48 60-103 (124)
98 2cq4_A RNA binding motif prote 99.0 3.2E-10 1.1E-14 70.4 3.0 46 1-49 59-104 (114)
99 1nu4_A U1A RNA binding domain; 99.0 3E-10 1E-14 68.3 2.8 45 5-51 47-91 (97)
100 1x4a_A Splicing factor, argini 99.0 1.1E-09 3.8E-14 67.4 5.4 46 4-51 56-101 (109)
101 1wez_A HnRNP H', FTP-3, hetero 98.9 7.7E-10 2.6E-14 68.5 4.5 45 2-50 49-93 (102)
102 3egn_A RNA-binding protein 40; 98.9 6.5E-10 2.2E-14 71.5 4.0 47 4-52 87-133 (143)
103 1iqt_A AUF1, heterogeneous nuc 98.9 8.1E-10 2.8E-14 63.6 4.0 43 1-46 33-75 (75)
104 2cjk_A Nuclear polyadenylated 98.9 1.5E-09 5.2E-14 69.7 5.7 45 2-49 122-166 (167)
105 3v4m_A Splicing factor U2AF 65 98.9 1.1E-09 3.8E-14 68.6 4.8 41 6-48 56-96 (105)
106 1x4b_A Heterogeneous nuclear r 98.9 9.3E-10 3.2E-14 68.5 4.2 49 1-52 61-109 (116)
107 1s79_A Lupus LA protein; RRM, 98.9 1.8E-09 6.1E-14 67.2 5.2 43 2-48 46-88 (103)
108 2g4b_A Splicing factor U2AF 65 98.9 8.2E-10 2.8E-14 71.3 3.6 44 2-47 129-172 (172)
109 2yh0_A Splicing factor U2AF 65 98.9 9.7E-10 3.3E-14 72.4 4.0 48 2-51 149-196 (198)
110 2cq3_A RNA-binding protein 9; 98.9 3.1E-09 1.1E-13 64.7 5.8 45 6-52 52-96 (103)
111 2lmi_A GRSF-1, G-rich sequence 98.9 1.5E-09 5E-14 67.2 4.4 43 2-48 49-91 (107)
112 2dh8_A DAZ-associated protein 98.9 5.7E-10 2E-14 68.2 2.1 47 2-51 51-97 (105)
113 2jvr_A Nucleolar protein 3; RN 98.9 1.7E-09 5.9E-14 68.6 4.4 42 6-49 64-105 (111)
114 2cpy_A RNA-binding protein 12; 98.9 1.2E-09 4E-14 68.3 3.3 45 1-49 50-94 (114)
115 1fje_B Nucleolin RBD12, protei 98.9 1.9E-09 6.4E-14 70.1 4.4 44 4-49 131-174 (175)
116 2f3j_A RNA and export factor b 98.9 3.2E-09 1.1E-13 71.6 5.6 45 2-49 123-167 (177)
117 3s7r_A Heterogeneous nuclear r 98.9 1.4E-09 4.9E-14 64.3 3.4 42 2-46 46-87 (87)
118 1x5p_A Negative elongation fac 98.9 2.9E-09 1E-13 64.4 4.7 44 7-52 47-90 (97)
119 1fxl_A Paraneoplastic encephal 98.9 3.1E-09 1E-13 67.8 5.1 48 2-51 37-84 (167)
120 1wg5_A Heterogeneous nuclear r 98.9 4.1E-09 1.4E-13 64.8 5.4 43 4-49 52-94 (104)
121 2dnn_A RNA-binding protein 12; 98.8 2.6E-09 8.8E-14 67.4 4.4 43 1-47 49-91 (109)
122 2cqh_A IGF-II mRNA-binding pro 98.8 2.5E-09 8.7E-14 64.0 4.1 44 7-52 42-86 (93)
123 3ue2_A Poly(U)-binding-splicin 98.8 2E-09 6.8E-14 69.0 3.7 42 5-48 67-108 (118)
124 2err_A Ataxin-2-binding protei 98.8 2.5E-09 8.7E-14 66.4 4.1 42 6-49 66-107 (109)
125 1b7f_A Protein (SXL-lethal pro 98.8 3.4E-09 1.2E-13 67.9 4.7 49 2-52 38-86 (168)
126 2dit_A HIV TAT specific factor 98.8 4.8E-09 1.6E-13 65.4 5.2 41 7-49 62-102 (112)
127 2cqg_A TDP-43, TAR DNA-binding 98.8 4.4E-09 1.5E-13 64.0 4.8 47 2-52 50-96 (103)
128 2cpj_A Non-POU domain-containi 98.8 5.9E-09 2E-13 63.1 5.3 43 7-51 49-91 (99)
129 1why_A Hypothetical protein ri 98.8 8.2E-09 2.8E-13 62.3 5.8 43 9-51 53-95 (97)
130 2hgl_A HNRPF protein, heteroge 98.8 1.7E-09 5.8E-14 70.8 2.9 42 2-47 82-123 (136)
131 2db1_A Heterogeneous nuclear r 98.8 1.5E-09 5.3E-14 68.4 2.6 43 2-48 55-97 (118)
132 3lqv_A PRE-mRNA branch site pr 98.8 7E-09 2.4E-13 64.2 5.5 45 5-51 43-87 (115)
133 1wg1_A KIAA1579 protein, homol 98.8 3.1E-09 1.1E-13 63.4 3.6 41 7-49 38-78 (88)
134 2bz2_A Negative elongation fac 98.8 8E-09 2.7E-13 65.8 5.7 44 7-52 71-114 (121)
135 2i2y_A Fusion protein consists 98.8 1.1E-08 3.7E-13 66.2 6.2 41 8-50 109-149 (150)
136 2dnq_A RNA-binding protein 4B; 98.8 1.2E-08 3.9E-13 60.9 5.8 42 9-52 42-83 (90)
137 2cpd_A Apobec-1 stimulating pr 98.8 8.3E-09 2.8E-13 62.5 4.6 43 7-51 49-91 (99)
138 2diu_A KIAA0430 protein; struc 98.8 1.5E-08 5.3E-13 63.9 5.8 41 10-52 47-87 (96)
139 2dgu_A Heterogeneous nuclear r 98.8 9.6E-09 3.3E-13 62.7 4.7 44 8-53 44-87 (103)
140 2qfj_A FBP-interacting repress 98.8 1.8E-08 6.1E-13 67.0 6.4 47 2-50 63-109 (216)
141 2kvi_A Nuclear polyadenylated 98.8 1E-08 3.6E-13 61.9 4.7 42 8-51 44-85 (96)
142 1whx_A Hypothetical protein ri 98.8 1.1E-08 3.9E-13 63.8 5.0 43 7-51 44-86 (111)
143 2cq2_A Hypothetical protein LO 98.7 1E-08 3.4E-13 65.9 4.8 45 8-52 62-109 (114)
144 2xnq_A Nuclear polyadenylated 98.7 1.1E-08 3.8E-13 62.4 4.8 40 8-49 56-95 (97)
145 1l3k_A Heterogeneous nuclear r 98.7 7.6E-09 2.6E-13 68.0 4.2 48 2-52 139-186 (196)
146 2la4_A Nuclear and cytoplasmic 98.7 4.6E-09 1.6E-13 63.7 2.9 40 7-48 61-100 (101)
147 1x4g_A Nucleolysin TIAR; struc 98.7 1.3E-08 4.5E-13 62.6 5.0 42 9-52 61-102 (109)
148 1sjr_A Polypyrimidine tract-bi 98.7 2E-08 6.8E-13 68.3 6.3 45 7-51 82-126 (164)
149 2jvo_A Nucleolar protein 3; nu 98.7 9.9E-09 3.4E-13 63.9 4.2 41 9-51 65-105 (108)
150 1wf1_A RNA-binding protein RAL 98.7 7.4E-09 2.5E-13 63.9 3.6 43 8-52 61-103 (110)
151 2hgn_A Heterogeneous nuclear r 98.7 5.5E-09 1.9E-13 68.7 3.0 46 1-50 79-124 (139)
152 3pgw_S U1-70K; protein-RNA com 98.7 1.2E-08 4.3E-13 77.3 5.4 48 1-50 136-183 (437)
153 4f02_A Polyadenylate-binding p 98.7 8.5E-09 2.9E-13 70.0 4.0 45 5-51 139-183 (213)
154 2j8a_A Histone-lysine N-methyl 98.7 3.3E-09 1.1E-13 70.6 1.9 47 1-49 40-96 (136)
155 3s6e_A RNA-binding protein 39; 98.7 9.4E-09 3.2E-13 65.6 4.0 39 8-48 54-92 (114)
156 3dxb_A Thioredoxin N-terminall 98.7 2.1E-08 7.1E-13 68.5 5.7 45 2-48 168-212 (222)
157 2dnp_A RNA-binding protein 14; 98.7 2.2E-08 7.4E-13 59.6 4.9 42 8-51 42-83 (90)
158 1fje_B Nucleolin RBD12, protei 98.7 6.2E-09 2.1E-13 67.6 2.6 47 2-51 47-93 (175)
159 3smz_A Protein raver-1, ribonu 98.7 1.3E-08 4.5E-13 70.9 4.2 46 5-52 222-267 (284)
160 2d9o_A DNAJ (HSP40) homolog, s 98.7 3.9E-08 1.3E-12 61.4 5.7 43 6-52 51-93 (100)
161 2dgt_A RNA-binding protein 30; 98.7 2.8E-08 9.5E-13 59.4 4.8 43 8-52 43-85 (92)
162 4f02_A Polyadenylate-binding p 98.7 2.5E-08 8.6E-13 67.7 5.1 46 2-49 50-95 (213)
163 3pgw_A U1-A; protein-RNA compl 98.7 3.1E-08 1E-12 69.0 5.6 44 5-50 48-91 (282)
164 2ytc_A PRE-mRNA-splicing facto 98.7 1.6E-08 5.4E-13 59.3 3.4 38 8-47 47-85 (85)
165 2hgm_A HNRPF protein, heteroge 98.6 1.3E-08 4.5E-13 66.0 3.1 43 1-47 77-119 (126)
166 1wex_A Hypothetical protein (r 98.6 4.2E-08 1.4E-12 61.3 5.1 42 8-51 50-93 (104)
167 1x4f_A Matrin 3; structural ge 98.6 3.7E-08 1.3E-12 62.9 4.9 43 7-51 60-104 (112)
168 2e5i_A Heterogeneous nuclear r 98.6 5.3E-08 1.8E-12 63.1 5.7 43 10-52 62-105 (124)
169 3r27_A HnRNP L, heterogeneous 98.6 3.1E-08 1.1E-12 62.3 4.4 41 7-49 55-97 (100)
170 2ghp_A U4/U6 snRNA-associated 98.6 2.5E-08 8.6E-13 69.8 4.3 42 5-49 250-291 (292)
171 1x4d_A Matrin 3; structural ge 98.6 3.2E-08 1.1E-12 62.0 4.4 41 8-50 51-93 (102)
172 3nmr_A Cugbp ELAV-like family 98.6 5E-08 1.7E-12 62.7 5.3 50 2-51 38-90 (175)
173 1x4c_A Splicing factor, argini 98.6 3.7E-08 1.3E-12 60.7 4.3 43 10-52 51-96 (108)
174 3smz_A Protein raver-1, ribonu 98.6 2.8E-08 9.4E-13 69.3 4.2 47 2-50 130-176 (284)
175 2e44_A Insulin-like growth fac 98.6 8.9E-08 3E-12 57.3 5.7 38 10-49 55-92 (96)
176 3md3_A Nuclear and cytoplasmic 98.6 6.7E-08 2.3E-12 61.4 5.3 45 5-51 37-81 (166)
177 1l3k_A Heterogeneous nuclear r 98.6 5.3E-08 1.8E-12 63.8 4.5 46 2-50 48-93 (196)
178 3tyt_A Heterogeneous nuclear r 98.6 4.9E-08 1.7E-12 66.8 4.4 42 5-46 161-204 (205)
179 3zzy_A Polypyrimidine tract-bi 98.6 5.3E-08 1.8E-12 63.8 4.3 45 8-52 64-109 (130)
180 2cq1_A PTB-like protein L; RRM 98.6 8.3E-08 2.8E-12 59.7 4.9 43 8-52 50-94 (101)
181 2dnl_A Cytoplasmic polyadenyla 98.6 7.6E-08 2.6E-12 59.9 4.6 25 6-30 49-73 (114)
182 3tyt_A Heterogeneous nuclear r 98.6 6.8E-08 2.3E-12 66.1 4.6 40 8-49 41-80 (205)
183 2ad9_A Polypyrimidine tract-bi 98.5 1.1E-07 3.9E-12 61.2 5.4 43 8-52 66-110 (119)
184 1sjq_A Polypyrimidine tract-bi 98.5 4.1E-08 1.4E-12 62.1 3.2 43 8-52 51-95 (105)
185 2dha_A FLJ20171 protein; RRM d 98.5 2.1E-08 7E-13 64.6 1.8 41 4-47 63-103 (123)
186 2e5g_A U6 snRNA-specific termi 98.5 4.6E-08 1.6E-12 58.7 2.9 43 2-50 41-83 (94)
187 2xs2_A Deleted in azoospermia- 98.5 1.6E-08 5.3E-13 61.4 0.3 43 2-49 44-86 (102)
188 3u1l_A PRE-mRNA-splicing facto 98.5 1.4E-07 4.9E-12 67.2 5.2 41 7-49 177-229 (240)
189 2hzc_A Splicing factor U2AF 65 98.5 1E-07 3.6E-12 55.8 3.5 35 7-44 51-85 (87)
190 2adc_A Polypyrimidine tract-bi 98.5 2.6E-07 8.9E-12 63.2 5.6 40 8-49 188-228 (229)
191 1qm9_A Polypyrimidine tract-bi 98.5 2E-07 6.9E-12 61.7 4.9 40 8-49 157-197 (198)
192 2yh0_A Splicing factor U2AF 65 98.4 5.4E-08 1.8E-12 63.9 1.3 42 5-49 47-88 (198)
193 3beg_B Splicing factor, argini 98.4 4.2E-07 1.4E-11 56.8 5.3 40 10-49 52-94 (115)
194 2g4b_A Splicing factor U2AF 65 98.4 2E-07 6.7E-12 59.9 3.6 42 5-49 47-88 (172)
195 2ghp_A U4/U6 snRNA-associated 98.4 2.8E-07 9.5E-12 64.4 4.4 43 6-50 156-198 (292)
196 2cjk_A Nuclear polyadenylated 98.3 3.1E-07 1E-11 58.8 3.4 44 1-48 37-80 (167)
197 3pgw_A U1-A; protein-RNA compl 98.3 5.8E-07 2E-11 62.5 4.8 37 9-47 244-281 (282)
198 3sde_A Paraspeckle component 1 98.3 8.2E-07 2.8E-11 61.9 4.7 46 4-49 132-179 (261)
199 2voo_A Lupus LA protein; RNA-b 98.3 6.3E-07 2.2E-11 60.9 4.0 45 5-52 146-190 (193)
200 1qm9_A Polypyrimidine tract-bi 98.3 1.2E-06 4.1E-11 57.9 5.1 39 9-49 41-79 (198)
201 2adc_A Polypyrimidine tract-bi 98.3 1.8E-06 6.2E-11 59.0 5.9 39 9-49 72-110 (229)
202 3d2w_A TAR DNA-binding protein 98.3 6.2E-07 2.1E-11 53.8 3.2 41 7-51 46-86 (89)
203 3tht_A Alkylated DNA repair pr 98.2 8E-07 2.7E-11 66.2 4.3 40 8-47 55-97 (345)
204 3sde_A Paraspeckle component 1 98.2 1.5E-06 5E-11 60.6 4.0 41 6-48 55-95 (261)
205 1wf0_A TDP-43, TAR DNA-binding 97.8 1.2E-05 4.2E-10 47.2 2.9 42 7-52 40-81 (88)
206 2dnr_A Synaptojanin-1; RRM dom 97.8 1.4E-05 4.7E-10 49.8 3.2 37 10-49 50-86 (91)
207 1ufw_A Synaptojanin 2; RNP dom 97.3 0.00013 4.4E-09 45.7 2.7 32 12-46 61-92 (95)
208 2kn4_A Immunoglobulin G-bindin 97.0 0.00031 1.1E-08 45.0 2.1 27 6-32 10-36 (158)
209 2i2y_A Fusion protein consists 96.7 0.00083 2.8E-08 42.9 2.2 40 6-48 10-50 (150)
210 1owx_A Lupus LA protein, SS-B, 93.5 0.19 6.7E-06 32.0 5.6 39 11-51 57-98 (121)
211 2l9w_A U4/U6 snRNA-associated- 90.9 0.18 6E-06 32.5 2.9 33 10-44 63-95 (117)
212 1wey_A Calcipressin 1; structu 84.9 0.58 2E-05 29.4 2.4 37 12-50 49-85 (104)
213 3p3d_A Nucleoporin 53; structu 74.3 2 6.9E-05 28.0 2.4 35 9-46 62-96 (132)
214 1uw4_A UPF3X; nonsense mediate 73.9 3.1 0.00011 25.1 3.1 38 10-47 46-86 (91)
215 1wwh_A Nucleoporin 35, nucleop 67.4 3.6 0.00012 26.2 2.4 35 9-45 59-93 (119)
216 2l08_A Regulator of nonsense t 61.2 9.7 0.00033 23.3 3.5 38 10-47 54-94 (97)
217 1whv_A Poly(A)-specific ribonu 45.9 19 0.00064 22.3 3.0 20 11-30 51-70 (100)
218 2k5n_A Putative cold-shock pro 35.4 20 0.0007 20.5 1.8 12 7-18 12-23 (74)
219 2kcm_A Cold shock domain famil 34.1 23 0.00077 20.3 1.9 12 7-18 10-21 (74)
220 1c9o_A CSPB, cold-shock protei 33.5 21 0.00073 19.7 1.7 12 7-18 11-22 (66)
221 1h95_A CSD, Y-box binding prot 33.0 19 0.00066 20.7 1.4 12 7-18 18-29 (79)
222 3ulj_A LIN28B, DNA-binding pro 32.8 16 0.00054 21.9 1.1 9 7-15 18-26 (90)
223 3cam_A Cold-shock domain famil 32.7 25 0.00086 19.5 1.9 12 7-18 11-22 (67)
224 2dhx_A Poly (ADP-ribose) polym 32.6 57 0.0019 20.2 3.7 33 10-45 48-80 (104)
225 3a0j_A Cold shock protein; OB- 31.7 21 0.00072 20.2 1.5 12 7-18 11-22 (73)
226 2g0c_A ATP-dependent RNA helic 31.6 47 0.0016 18.2 3.0 33 11-46 42-74 (76)
227 3i2z_B RNA chaperone, negative 30.6 28 0.00096 19.5 1.9 12 7-18 15-26 (71)
228 3aqq_A Calcium-regulated heat 29.6 24 0.00082 23.0 1.6 12 7-18 72-83 (147)
229 1g6p_A Cold shock protein TMCS 29.2 28 0.00096 19.2 1.7 12 7-18 10-21 (66)
230 3lpe_A Putative transcription 29.1 44 0.0015 19.5 2.7 26 8-33 49-74 (92)
231 1x65_A UNR protein; cell-free 29.1 21 0.0007 21.2 1.1 11 8-18 17-27 (89)
232 2ytv_A Cold shock domain-conta 28.3 18 0.00061 21.0 0.7 11 8-18 17-27 (79)
233 1wfq_A UNR protein; beta-barre 27.3 31 0.0011 20.4 1.7 10 9-18 28-37 (89)
234 3ctr_A Poly(A)-specific ribonu 27.2 18 0.0006 22.5 0.6 20 11-30 41-60 (101)
235 2yty_A Cold shock domain-conta 26.4 29 0.00098 20.5 1.4 10 9-18 28-37 (88)
236 2ytx_A Cold shock domain-conta 25.9 29 0.001 20.7 1.4 11 8-18 27-37 (97)
237 2lss_A Cold shock-like protein 26.4 21 0.0007 20.1 0.0 12 7-18 14-25 (70)
238 3bsu_A Ribonuclease H1, RNAse 20.0 1E+02 0.0035 16.4 2.8 19 10-28 32-50 (53)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.33 E-value=1.2e-12 Score=80.89 Aligned_cols=45 Identities=29% Similarity=0.433 Sum_probs=41.9
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCC
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANS 48 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~ 48 (83)
|+.||.+||||||.|.+.++|++||+.|||..+.| ++|.|++|.+
T Consensus 54 d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g--r~l~V~~AkP 98 (99)
T 4fxv_A 54 DKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQS--KTIKVSYARP 98 (99)
T ss_dssp CSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETT--EECEEEECCB
T ss_pred cCCCCcccccEEEEECCHHHHHHHHHHhCCCEECC--EEEEEEEeeC
Confidence 78899999999999999999999999999999977 7899999864
No 2
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.30 E-value=1.8e-12 Score=78.05 Aligned_cols=49 Identities=8% Similarity=0.070 Sum_probs=39.6
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCCC
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSS 52 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~~ 52 (83)
|+.+|.+||||||.|.+.++|++||+.|||..+.| +.|.|+++.++...
T Consensus 38 ~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~g--r~i~V~~~~~~~~~ 86 (90)
T 3p5t_L 38 NRANGQSKGFALVGVGSEASSKKLMDLLPKRELHG--QNPVVTPSNKLEHH 86 (90)
T ss_dssp CTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSS--CCCEECCC------
T ss_pred cCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCC--EEEEEEECCCCccc
Confidence 77899999999999999999999999999999977 67999998876443
No 3
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.29 E-value=2.7e-12 Score=79.45 Aligned_cols=46 Identities=26% Similarity=0.355 Sum_probs=41.5
Q ss_pred CCCCCCCccceEEEEeCCHHHHHHHHHHhCCCC----CCCCCcceEEEecCC
Q psy6355 1 MKGFTDFCRYLGFIRFDQRIEAERAIQELNGTI----PKGSNEPITVKFANS 48 (83)
Q Consensus 1 ~Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~----~~G~~~~l~V~fA~~ 48 (83)
.|+.||.|||||||.|.+.++|++||+.|||.. ++| ++|.|+||..
T Consensus 45 ~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G--r~i~V~~Aks 94 (95)
T 2lkz_A 45 KDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG--KTIGVDFAKS 94 (95)
T ss_dssp CCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT--EEEEEEECCC
T ss_pred ecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECC--EEEEEEEccC
Confidence 488899999999999999999999999999974 666 7899999864
No 4
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.26 E-value=4.7e-12 Score=76.94 Aligned_cols=50 Identities=12% Similarity=0.232 Sum_probs=42.4
Q ss_pred CCCCCCCccceEEEEeCCHHHHHHHHHHhCCC-CCCCCCcceEEEecCCCCCC
Q psy6355 1 MKGFTDFCRYLGFIRFDQRIEAERAIQELNGT-IPKGSNEPITVKFANSPSSS 52 (83)
Q Consensus 1 ~Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~-~~~G~~~~l~V~fA~~~~~~ 52 (83)
.|+.||.+||||||.|.+.++|++||+.|++. .+.| ++|.|.||.+....
T Consensus 36 ~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~g--r~i~V~~a~~~~~~ 86 (91)
T 2lxi_A 36 RNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILG--QKVSMHYSDPKPKI 86 (91)
T ss_dssp SCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETT--EEEEEECCCSCCCC
T ss_pred ecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECC--EEEEEEEcCCCCCC
Confidence 47889999999999999999999999988554 5777 78999999865443
No 5
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.26 E-value=4.6e-12 Score=79.81 Aligned_cols=50 Identities=16% Similarity=0.084 Sum_probs=44.5
Q ss_pred CCCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCCC
Q psy6355 1 MKGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSS 52 (83)
Q Consensus 1 ~Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~~ 52 (83)
.|+.||.|||||||.|.+.++|++||+.|||..+.| ++|.|.+|.....+
T Consensus 40 ~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~g--r~i~V~~a~~~~~~ 89 (110)
T 3s8s_A 40 LHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMG--NIIHAQLDIKGQQR 89 (110)
T ss_dssp ECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT--EECEEEECSTTHHH
T ss_pred ECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECC--eEEEEEECCCCcHH
Confidence 378899999999999999999999999999999977 77999999765444
No 6
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=3e-11 Score=72.57 Aligned_cols=49 Identities=29% Similarity=0.377 Sum_probs=43.8
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCCC
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSS 52 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~~ 52 (83)
|+.+|.++|||||.|.+.++|++|++.|||..+.| ++|.|.++......
T Consensus 40 ~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~V~~a~~~~~~ 88 (95)
T 2dnz_A 40 DSDTGRSKGYGFITFSDSECARRALEQLNGFELAG--RPMRVGHVTERLDG 88 (95)
T ss_dssp CSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSS--SCCEEEESSCCCCC
T ss_pred cCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCC--cEEEEEEcccccCC
Confidence 67789999999999999999999999999999977 67999999766443
No 7
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.22 E-value=2e-11 Score=73.46 Aligned_cols=49 Identities=29% Similarity=0.329 Sum_probs=44.1
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCCC
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSS 52 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~~ 52 (83)
|+.+|.++|||||.|.+.++|++|++.|||..+.| ++|.|+++.+...+
T Consensus 41 ~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g--~~l~v~~a~~~~~~ 89 (96)
T 1x5t_A 41 DPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCN--RPITVSYAFKKDSK 89 (96)
T ss_dssp CTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETT--EECEEEESCCCCCC
T ss_pred cCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECC--EEEEEEEecccCCC
Confidence 67899999999999999999999999999999976 78999999876544
No 8
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.21 E-value=4.5e-11 Score=72.54 Aligned_cols=49 Identities=22% Similarity=0.283 Sum_probs=43.5
Q ss_pred CCCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCCC
Q psy6355 1 MKGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSS 52 (83)
Q Consensus 1 ~Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~~ 52 (83)
.|+.+|.++|||||.|.+.++|++||+ |||..+.| ++|.|.++.+...+
T Consensus 44 ~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g--~~l~V~~a~~~~~~ 92 (99)
T 2dgs_A 44 YDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMG--KKVEVKRAEPRDSK 92 (99)
T ss_dssp CCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSS--CBCEEEECCCCCCC
T ss_pred eCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECC--eEEEEEECCCCccc
Confidence 367889999999999999999999998 99999977 67999999876554
No 9
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.20 E-value=5.1e-11 Score=72.96 Aligned_cols=51 Identities=31% Similarity=0.392 Sum_probs=44.3
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCC-CCCCcceEEEecCCCCCC
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIP-KGSNEPITVKFANSPSSS 52 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~-~G~~~~l~V~fA~~~~~~ 52 (83)
|+.+|.+||||||.|.+.++|++||+.|||..+ .+..++|.|+++.+...+
T Consensus 48 ~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~~~~ 99 (106)
T 2dgp_A 48 DRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRG 99 (106)
T ss_dssp CSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECCCCSCC
T ss_pred cCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEEECCccccc
Confidence 677899999999999999999999999999874 444578999999876554
No 10
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.20 E-value=2.1e-11 Score=74.21 Aligned_cols=49 Identities=18% Similarity=0.326 Sum_probs=44.0
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCCC
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSS 52 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~~ 52 (83)
|+.+|.++|||||.|.+.++|++||+.|||..+.| +.|.|.++.+..+.
T Consensus 47 ~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g--~~l~V~~a~~~~~~ 95 (102)
T 2fc8_A 47 DRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDG--NKVTLDWAKPKGEG 95 (102)
T ss_dssp CSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETT--EECEEEECCCCCSS
T ss_pred cCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECC--eEEEEEEecCCCCC
Confidence 67789999999999999999999999999999977 67999999876544
No 11
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.20 E-value=3.7e-11 Score=73.49 Aligned_cols=49 Identities=24% Similarity=0.306 Sum_probs=43.9
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCCC
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSS 52 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~~ 52 (83)
|+.+|.++|||||.|.+.++|++||+.|||..+.| ++|.|.++.+...+
T Consensus 50 ~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~v~~a~~~~~~ 98 (105)
T 1x5u_A 50 DRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYG--KPIRVNKASAHNKN 98 (105)
T ss_dssp CSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSS--CBCEEEETTTTSCC
T ss_pred cCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECC--eEEEEEECCCCCcC
Confidence 66789999999999999999999999999999977 67999999876544
No 12
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.20 E-value=2.6e-11 Score=71.12 Aligned_cols=46 Identities=24% Similarity=0.428 Sum_probs=42.1
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCC
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSP 49 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~ 49 (83)
|+.+|.++|||||.|.+.++|++|++.|||..+.| ++|.|+++.+.
T Consensus 36 ~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g--~~l~v~~a~~~ 81 (83)
T 3md1_A 36 DMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNG--RPLRINWAAKL 81 (83)
T ss_dssp CTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETT--EECEEEECCCC
T ss_pred cCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCC--cEEEEEecCcC
Confidence 67789999999999999999999999999999976 78999999754
No 13
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.20 E-value=3.6e-11 Score=72.84 Aligned_cols=49 Identities=18% Similarity=0.231 Sum_probs=44.1
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCCC
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSS 52 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~~ 52 (83)
|+.+|.++|||||.|.+.++|++||+.|||..+.| ++|.|.++.+...+
T Consensus 43 ~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~V~~a~~~~~~ 91 (99)
T 1whw_A 43 DSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQG--RMLHVLPSTIKKEA 91 (99)
T ss_dssp CTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSS--CEEEEEECCCCSTT
T ss_pred cCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECC--cEEEEEEcCCCccc
Confidence 66789999999999999999999999999999976 67999999876554
No 14
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.20 E-value=2.6e-11 Score=74.05 Aligned_cols=49 Identities=24% Similarity=0.360 Sum_probs=44.0
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCCC
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSS 52 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~~ 52 (83)
|+.||.++|||||.|.+.++|++||+.|||..+.| ++|.|.++......
T Consensus 48 ~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g--~~l~V~~a~~~~~~ 96 (103)
T 2dnm_A 48 EPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDG--RELRVQVARYGRRD 96 (103)
T ss_dssp CSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTT--BCCEEEECSSCCSC
T ss_pred CCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECC--cEEEEEECCcCCCC
Confidence 67789999999999999999999999999999977 67999999866444
No 15
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.19 E-value=2.9e-11 Score=73.55 Aligned_cols=44 Identities=30% Similarity=0.327 Sum_probs=40.4
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecC
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFAN 47 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~ 47 (83)
|+.+|.++|||||.|.+.++|++||+.|||..+.| +.|.|++|.
T Consensus 56 ~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g--~~l~V~~A~ 99 (99)
T 2la6_A 56 DRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG--NPIKVSFAT 99 (99)
T ss_dssp CTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSS--SBCEEEECC
T ss_pred cCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC--cEEEEEecC
Confidence 67899999999999999999999999999999977 679999873
No 16
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.19 E-value=5.2e-11 Score=75.09 Aligned_cols=48 Identities=31% Similarity=0.479 Sum_probs=42.9
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCCC
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSS 52 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~~ 52 (83)
|+ +|.++|||||.|.+.++|++||+.|||..+.| ++|.|.++..+...
T Consensus 42 ~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g--~~l~V~~a~~~~~~ 89 (116)
T 2fy1_A 42 DR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHG--KAIKVEQAKKPSFQ 89 (116)
T ss_dssp ST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSS--SBCEEEECCCSSCS
T ss_pred CC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECC--EEEEEEECCCCCCC
Confidence 55 89999999999999999999999999999977 67999999876544
No 17
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.19 E-value=2.9e-11 Score=73.19 Aligned_cols=48 Identities=17% Similarity=0.218 Sum_probs=43.5
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCC
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSS 51 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~ 51 (83)
|+.+|.++|||||.|.+.++|++|++.|||..+.| +.|.|+++.+...
T Consensus 37 ~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g--~~l~V~~a~~~~~ 84 (96)
T 2x1f_A 37 DPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGS--RFLKCGYSSNSDI 84 (96)
T ss_dssp CTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETT--EECEEEECSCSSG
T ss_pred CCCCCccceEEEEEECCHHHHHHHHHHhCCCeECC--eEEEEEEcCCCCC
Confidence 67789999999999999999999999999999977 7899999987644
No 18
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.18 E-value=5.5e-11 Score=72.34 Aligned_cols=49 Identities=29% Similarity=0.397 Sum_probs=43.7
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCCC
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSS 52 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~~ 52 (83)
|+.+|.++|||||.|.+.++|++||+.|||..+.| ++|.|.++.+....
T Consensus 47 ~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g--~~l~v~~a~~~~~~ 95 (102)
T 1x5s_A 47 DRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDG--RQIRVDQAGKSSDN 95 (102)
T ss_dssp CSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTS--CCCEEEEEECCCCC
T ss_pred CCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECC--eEEEEEECCCCCCC
Confidence 67789999999999999999999999999999977 67999999876543
No 19
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.18 E-value=3.4e-11 Score=74.61 Aligned_cols=49 Identities=14% Similarity=0.135 Sum_probs=44.0
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCCC
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSS 52 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~~ 52 (83)
|+.+|.++|||||.|.+.++|++||+.|||..+.| ++|.|.++.+....
T Consensus 58 ~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g--~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 58 DKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG--SKLKVSLARKKPPM 106 (113)
T ss_dssp CTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT--EECEEECSSCCCCS
T ss_pred eCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCC--CEEEEEECCCCCCC
Confidence 67899999999999999999999999999999976 77999999876544
No 20
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.17 E-value=7.5e-11 Score=72.08 Aligned_cols=51 Identities=25% Similarity=0.415 Sum_probs=44.0
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCC-CCcceEEEecCCCCCCc
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKG-SNEPITVKFANSPSSSN 53 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G-~~~~l~V~fA~~~~~~~ 53 (83)
|+ +|.++|||||.|.+.++|++||+.|||..+.| ..++|.|.++....++.
T Consensus 50 ~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~a~~~~~~~ 101 (105)
T 2dnh_A 50 GP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKESG 101 (105)
T ss_dssp CS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEESCSSCCCS
T ss_pred CC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEECccCcccC
Confidence 45 79999999999999999999999999998743 44789999998876653
No 21
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.17 E-value=3.7e-11 Score=73.57 Aligned_cols=46 Identities=24% Similarity=0.390 Sum_probs=42.0
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCC
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSP 49 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~ 49 (83)
|+.||.++|||||.|.+.++|++|++.|||..+.| ++|.|+++.+.
T Consensus 58 ~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~V~~a~~~ 103 (106)
T 1p27_B 58 DRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMG--QPISVDWCFVR 103 (106)
T ss_dssp CTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSS--SBCEEEESEES
T ss_pred cCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECC--cEEEEEeecCC
Confidence 67889999999999999999999999999999977 67999998754
No 22
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.17 E-value=2.8e-11 Score=73.69 Aligned_cols=50 Identities=24% Similarity=0.286 Sum_probs=44.6
Q ss_pred CCCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCCC
Q psy6355 1 MKGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSS 52 (83)
Q Consensus 1 ~Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~~ 52 (83)
.|+.+|.++|||||.|.+.++|++||+.|||..+.| ++|.|.++.+...+
T Consensus 46 ~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g--~~l~V~~a~~~~~~ 95 (102)
T 2cqb_A 46 LDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG--RTIRVNLAKPMRIK 95 (102)
T ss_dssp CCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETT--EEEEEEECCCCCCC
T ss_pred ecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC--cEEEEEeCCCCCCC
Confidence 367889999999999999999999999999999976 78999999876554
No 23
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.17 E-value=2.8e-11 Score=71.52 Aligned_cols=45 Identities=29% Similarity=0.412 Sum_probs=40.7
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCC
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANS 48 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~ 48 (83)
|+.+|.++|||||.|.+.++|++|++.|||..+.| ++|.|.++.+
T Consensus 41 ~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g--~~l~v~~a~~ 85 (87)
T 3bs9_A 41 DMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG--RQIRTNWATR 85 (87)
T ss_dssp CTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT--EECEEEEEC-
T ss_pred cCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC--eEEEEEecCC
Confidence 56789999999999999999999999999999977 7799999865
No 24
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.17 E-value=2.9e-11 Score=74.29 Aligned_cols=46 Identities=11% Similarity=0.091 Sum_probs=41.2
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCC
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANS 48 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~ 48 (83)
|+.||.+||||||.|.+.++|++||+.|||..+.| .++|.|.+|.+
T Consensus 47 d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g-~r~l~V~~a~~ 92 (100)
T 3ns6_A 47 DEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDL-KHRLFLYTMKD 92 (100)
T ss_dssp ETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSS-SCBCEEEESHH
T ss_pred cCCCCccceEEEEEECCHHHHHHHHHHhCCcccCC-CeEEEEEECch
Confidence 77899999999999999999999999999999965 25799998854
No 25
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.16 E-value=4.8e-11 Score=72.85 Aligned_cols=49 Identities=27% Similarity=0.333 Sum_probs=44.1
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCCC
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSS 52 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~~ 52 (83)
|+.+|.++|||||.|.+.++|++||+.|||..+.| ++|.|.++.+...+
T Consensus 50 ~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g--~~l~v~~a~~~~~~ 98 (103)
T 2cq0_A 50 DKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDH--LILNVEWAKPSTNS 98 (103)
T ss_dssp CSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETT--EECEEEESSCCCCS
T ss_pred cCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCC--cEEEEEECCCCCCC
Confidence 66789999999999999999999999999999977 68999999876554
No 26
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.16 E-value=3.5e-11 Score=72.77 Aligned_cols=47 Identities=19% Similarity=0.226 Sum_probs=42.4
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCC
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPS 50 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~ 50 (83)
|+.+|.++|||||.|.+.++|++||+.|||..+.| ++|.|+++..+.
T Consensus 50 ~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g--~~l~V~~a~~~~ 96 (98)
T 2cqp_A 50 YNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGS--RKVKLVLGSGPS 96 (98)
T ss_dssp ECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETT--EECEEEESSCSS
T ss_pred ECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCC--eEEEEEEcCCCC
Confidence 56789999999999999999999999999999977 779999987653
No 27
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=5.3e-11 Score=72.34 Aligned_cols=47 Identities=21% Similarity=0.350 Sum_probs=42.2
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCC
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSS 51 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~ 51 (83)
|+ +|.++|||||.|.+.++|++|++.|||..+.| ++|.|.++.+...
T Consensus 52 ~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~v~~a~~~~~ 98 (100)
T 2do4_A 52 NR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKE--NIIKVAISNSGPS 98 (100)
T ss_dssp CT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSS--CEEEEEECCCCSC
T ss_pred CC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECC--EEEEEEECCCCCC
Confidence 55 89999999999999999999999999999977 6799999987644
No 28
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.15 E-value=5.3e-11 Score=77.42 Aligned_cols=50 Identities=24% Similarity=0.480 Sum_probs=44.3
Q ss_pred CCCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCCC
Q psy6355 1 MKGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSS 52 (83)
Q Consensus 1 ~Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~~ 52 (83)
.|+.+|.++|||||.|.+.++|++||+.|||..+.| ++|.|.++.+...+
T Consensus 104 ~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~v~~a~~~~~~ 153 (158)
T 2kn4_A 104 RDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDG--RELRVQMARYGRPP 153 (158)
T ss_dssp CCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSS--SEEEEEEECCSSCC
T ss_pred ecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC--eEEEEEECCCCCCC
Confidence 367799999999999999999999999999999976 78999999865443
No 29
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.15 E-value=2.8e-11 Score=73.67 Aligned_cols=47 Identities=21% Similarity=0.341 Sum_probs=41.4
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCC
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSS 51 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~ 51 (83)
|+.+|.+||||||.|.+.++|++||+ |||..+.| ++|.|.++.+...
T Consensus 51 ~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g--~~l~V~~a~~~~~ 97 (101)
T 1fj7_A 51 DVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFG--NEIKLEKPKGRDG 97 (101)
T ss_dssp EEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTT--BCCEEECCSCCCC
T ss_pred cCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECC--cEEEEEEcCCCCC
Confidence 56679999999999999999999998 99999977 6799999976543
No 30
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.15 E-value=3.9e-11 Score=74.06 Aligned_cols=48 Identities=21% Similarity=0.311 Sum_probs=43.0
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCC
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSS 51 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~ 51 (83)
|+.+|.++|||||.|.+.++|++||+.|||..+.| ++|.|.++.+...
T Consensus 61 ~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g--~~l~V~~a~~~~~ 108 (110)
T 1oo0_B 61 DRRTGFSKGYALVEYETHKQALAAKEALNGAEIMG--QTIQVDWCFVKGP 108 (110)
T ss_dssp CTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETT--EECEEEESEESSC
T ss_pred cCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECC--cEEEEEEcccCCC
Confidence 67789999999999999999999999999999977 6899999876543
No 31
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.15 E-value=8.2e-11 Score=75.74 Aligned_cols=48 Identities=23% Similarity=0.306 Sum_probs=43.2
Q ss_pred CCCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCC
Q psy6355 1 MKGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPS 50 (83)
Q Consensus 1 ~Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~ 50 (83)
.|+.+|.++|||||.|.+.++|++||+.|||..+.| ++|.|+++.+.+
T Consensus 80 ~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g--~~l~V~~a~~~~ 127 (129)
T 2kxn_B 80 YDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDG--RRIRVDFSITKR 127 (129)
T ss_dssp CCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSS--SCCEESCCSSSS
T ss_pred ecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC--EEEEEEEecCCC
Confidence 377899999999999999999999999999999977 679999987653
No 32
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.14 E-value=8e-11 Score=72.44 Aligned_cols=50 Identities=16% Similarity=0.268 Sum_probs=44.3
Q ss_pred CCCCCCCccceEEEEeCCHHHHHHHHHHhC------CCCCCCCCcceEEEecCCCCCC
Q psy6355 1 MKGFTDFCRYLGFIRFDQRIEAERAIQELN------GTIPKGSNEPITVKFANSPSSS 52 (83)
Q Consensus 1 ~Dk~TG~SrG~gFV~F~~~e~A~~AI~~Ln------G~~~~G~~~~l~V~fA~~~~~~ 52 (83)
.|+.+|.++|||||.|.+.++|++||+.|| |..+.| ++|.|.++.+....
T Consensus 49 ~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g--~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 49 LHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG--RQLKVDLAVTRDEA 104 (111)
T ss_dssp BCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS--CEEEEECCCCCCCC
T ss_pred ecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC--EEEEEEECCCCccC
Confidence 367889999999999999999999999999 888977 67999999876554
No 33
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.14 E-value=5.1e-11 Score=74.17 Aligned_cols=49 Identities=27% Similarity=0.457 Sum_probs=44.0
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCCC
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSS 52 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~~ 52 (83)
|+.+|.++|||||.|.+.++|++||+.|||..+.| ++|.|.++.+...+
T Consensus 60 ~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~V~~a~~~~~~ 108 (115)
T 2cpz_A 60 DKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGM--KRLKVQLKRSKNDS 108 (115)
T ss_dssp CSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETT--EECEEECCCCSCCC
T ss_pred CCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECC--EEEEEEEcCCCCcC
Confidence 66789999999999999999999999999999977 78999999876554
No 34
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.14 E-value=6.9e-11 Score=73.42 Aligned_cols=49 Identities=27% Similarity=0.388 Sum_probs=43.9
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCCC
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSS 52 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~~ 52 (83)
|+.+|.++|||||.|.+.++|++||+.|||..+.| +.|.|.++......
T Consensus 50 ~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~V~~a~~~~~~ 98 (115)
T 2dgo_A 50 DMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG--RQIRTNWATRKPPA 98 (115)
T ss_dssp CTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETT--EECEEEESSCCCCC
T ss_pred cCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC--EEEEEEEccCCCCC
Confidence 56789999999999999999999999999999977 78999999876554
No 35
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.13 E-value=5.9e-11 Score=72.28 Aligned_cols=49 Identities=24% Similarity=0.268 Sum_probs=43.7
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCCC
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSS 52 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~~ 52 (83)
|+.+|.++|||||.|.+.++|++|++.|||..+.| ++|.|.++.+...+
T Consensus 43 ~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~v~~a~~~~~~ 91 (104)
T 1p1t_A 43 DRETGKPKGYGFCEYQDQETALSAMRNLNGREFSG--RALRVDNAASEKNK 91 (104)
T ss_dssp ETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSS--SCBEEEETTCTTHH
T ss_pred CCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCC--cEEEEEeCCCccch
Confidence 56789999999999999999999999999999977 67999999876544
No 36
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.13 E-value=1.3e-10 Score=72.06 Aligned_cols=47 Identities=28% Similarity=0.492 Sum_probs=41.4
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCC------CCcceEEEecCCC
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKG------SNEPITVKFANSP 49 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G------~~~~l~V~fA~~~ 49 (83)
|+ +|.++|||||.|.+.++|++||+.|||..+.+ ..++|.|+||+++
T Consensus 60 ~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 60 DS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFSGPS 112 (114)
T ss_dssp CS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSSCBEEEECCCS
T ss_pred CC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCCceeEEccCCC
Confidence 55 89999999999999999999999999998843 3478999999865
No 37
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.13 E-value=1.6e-10 Score=70.61 Aligned_cols=48 Identities=25% Similarity=0.360 Sum_probs=42.8
Q ss_pred CCCCCccceEEEEeCCHHHHHHHHHHh-CCCCCCCCCcceEEEecCCCCCC
Q psy6355 3 GFTDFCRYLGFIRFDQRIEAERAIQEL-NGTIPKGSNEPITVKFANSPSSS 52 (83)
Q Consensus 3 k~TG~SrG~gFV~F~~~e~A~~AI~~L-nG~~~~G~~~~l~V~fA~~~~~~ 52 (83)
+.+|.++|||||.|.+.++|++||+.| ||..+.| ++|.|.++.+....
T Consensus 52 ~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g--~~l~v~~a~~~~~~ 100 (107)
T 2cph_A 52 TGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYG--RRLVLEWADSEVTV 100 (107)
T ss_dssp SSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSS--CBCEEEECCCCCCC
T ss_pred CCCCCcCceEEEEECCHHHHHHHHHHhccCCeECC--CEEEEEeCCCCCCC
Confidence 568999999999999999999999999 9999977 67999999876544
No 38
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.13 E-value=5e-11 Score=71.07 Aligned_cols=48 Identities=27% Similarity=0.277 Sum_probs=39.6
Q ss_pred CCCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCC
Q psy6355 1 MKGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSS 51 (83)
Q Consensus 1 ~Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~ 51 (83)
.|+.+|.++|||||.|.+.+ |++|++.|||..+.| ++|.|++|.+...
T Consensus 35 ~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g--~~l~V~~a~~~~~ 82 (90)
T 2ki2_A 35 YDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMG--RTIRVTEANPKKS 82 (90)
T ss_dssp CCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSS--SSCSEEEC-----
T ss_pred EcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECC--eEEEEEEcCCCCC
Confidence 36778999999999999999 999999999999977 6799999886543
No 39
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=7.1e-11 Score=72.06 Aligned_cols=48 Identities=25% Similarity=0.503 Sum_probs=42.9
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCC-CCCCCcceEEEecCCCCCC
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTI-PKGSNEPITVKFANSPSSS 52 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~-~~G~~~~l~V~fA~~~~~~ 52 (83)
|+ +|.++|||||.|.+.++|++||+.|||.. +.| ++|.|.++.+...+
T Consensus 45 ~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g--~~l~v~~a~~~~~~ 93 (104)
T 2dhg_A 45 DQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGS--KPVRLSVAIPKASR 93 (104)
T ss_dssp CT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSS--SCCCCCBCCCCCSC
T ss_pred CC-CCCccceEEEEECCHHHHHHHHHHccCCcccCC--EeEEEEEccCCCcC
Confidence 56 89999999999999999999999999999 977 67999999776554
No 40
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.12 E-value=3.4e-11 Score=77.01 Aligned_cols=48 Identities=27% Similarity=0.369 Sum_probs=42.4
Q ss_pred CCCCCCCccceEEEEeCCHHHHHHHHHHhCCC----CCCCCCcceEEEecCCCCC
Q psy6355 1 MKGFTDFCRYLGFIRFDQRIEAERAIQELNGT----IPKGSNEPITVKFANSPSS 51 (83)
Q Consensus 1 ~Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~----~~~G~~~~l~V~fA~~~~~ 51 (83)
+|+.||.+||||||.|.+. +|++||+.|||. .+.| ++|.|+++.+...
T Consensus 59 ~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g--r~l~V~~a~~~~~ 110 (131)
T 2m2b_A 59 KDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG--KTINVEFAKGSKR 110 (131)
T ss_dssp BCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG--CCCCCEECCCSCC
T ss_pred EcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC--EEEEEEECCCCCC
Confidence 4788999999999999999 999999999999 8877 6799999976533
No 41
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.12 E-value=4e-11 Score=79.73 Aligned_cols=47 Identities=13% Similarity=0.147 Sum_probs=42.9
Q ss_pred CCCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCC
Q psy6355 1 MKGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSP 49 (83)
Q Consensus 1 ~Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~ 49 (83)
.|+.||.+||||||.|.+.++|++||+.|||..+.| +.|.|++|.+.
T Consensus 91 ~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~G--r~l~V~~a~~~ 137 (156)
T 3n9u_C 91 ENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNG--EKVDVRPATRQ 137 (156)
T ss_dssp ECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETT--EECEEEECCHH
T ss_pred ecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC--eEeEEEEcCCC
Confidence 378899999999999999999999999999999977 77999999753
No 42
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.12 E-value=5.8e-11 Score=71.89 Aligned_cols=49 Identities=18% Similarity=0.344 Sum_probs=42.3
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCc--ceEEEecCCCC
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNE--PITVKFANSPS 50 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~--~l~V~fA~~~~ 50 (83)
|+.+|.++|||||.|.+.++|++|++.|||..+.|... +|.|.+|....
T Consensus 45 ~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~v~~a~~~~ 95 (99)
T 2div_A 45 NRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYSG 95 (99)
T ss_dssp CSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECCEEETTCCS
T ss_pred cCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEEEeecCCCC
Confidence 67899999999999999999999999999999877432 28999987653
No 43
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=7.7e-11 Score=70.61 Aligned_cols=44 Identities=20% Similarity=0.170 Sum_probs=40.2
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecC
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFAN 47 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~ 47 (83)
|+.+|.++|||||.|.+.++|++|++.|||..+.| ++|.|++|.
T Consensus 51 ~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g--~~l~v~~ak 94 (94)
T 2e5h_A 51 DKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFG--RVIKASIAI 94 (94)
T ss_dssp CSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETT--EEEEEEECC
T ss_pred CCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCC--cEEEEEecC
Confidence 67789999999999999999999999999999976 779999873
No 44
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.11 E-value=1.2e-10 Score=73.37 Aligned_cols=49 Identities=22% Similarity=0.375 Sum_probs=43.6
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCCC
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSS 52 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~~ 52 (83)
|+.+|.++|||||.|.+.++|++||+.|||..+.| +.|.|+++......
T Consensus 57 ~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~v~~a~~~~~~ 105 (126)
T 3ex7_B 57 DRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMG--QPISVDWCFVRGPP 105 (126)
T ss_dssp CTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSS--SBCEEEESEESSSC
T ss_pred cCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCC--eEEEEEEecCCCCC
Confidence 67799999999999999999999999999999977 67999999765444
No 45
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.11 E-value=6.2e-11 Score=71.01 Aligned_cols=45 Identities=24% Similarity=0.268 Sum_probs=41.2
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCC
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANS 48 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~ 48 (83)
|+.+|.++|||||.|.+.++|++|++.|||..+.| ++|.|+++..
T Consensus 50 ~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g--~~l~v~~a~~ 94 (95)
T 2cqc_A 50 DQQSRRSRGFAFVYFENVDDAKEAKERANGMELDG--RRIRVSGPSS 94 (95)
T ss_dssp CSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETT--EEEEEECCSC
T ss_pred cCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECC--EEEEEEecCC
Confidence 67789999999999999999999999999999977 7899999864
No 46
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.11 E-value=1.8e-10 Score=70.74 Aligned_cols=48 Identities=19% Similarity=0.170 Sum_probs=42.0
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhC--CCCCCCCCcceEEEecCCCCC
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELN--GTIPKGSNEPITVKFANSPSS 51 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~Ln--G~~~~G~~~~l~V~fA~~~~~ 51 (83)
|+.+|.+||||||.|.+.++|++||+.|| +..+.| ++|.|.+|.+...
T Consensus 45 ~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g--~~l~V~~a~~~~~ 94 (109)
T 2dis_A 45 AADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG--HQIAVDWAEPEID 94 (109)
T ss_dssp SCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTT--BCCEEEESCSSCS
T ss_pred CCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecC--CeEEEEEcCCCCC
Confidence 67789999999999999999999999996 477877 6799999986544
No 47
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.11 E-value=7.5e-11 Score=72.12 Aligned_cols=48 Identities=17% Similarity=0.275 Sum_probs=42.9
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCCC
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSS 52 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~~ 52 (83)
|+.||.++|||||.|.+.++|++|+ .|||..+.| ++|.|.++.+....
T Consensus 49 ~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g--~~l~V~~a~~~~~~ 96 (103)
T 2dng_A 49 DKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGD--RSLRVDIAEGRKQD 96 (103)
T ss_dssp CSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETT--EECEEEECCCCCCC
T ss_pred cCCCCccceEEEEEECCHHHHHHHH-hhCCCeECC--eEEEEEEecCCCCC
Confidence 6778999999999999999999999 899999977 68999999876544
No 48
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.11 E-value=1.1e-10 Score=72.77 Aligned_cols=46 Identities=28% Similarity=0.408 Sum_probs=41.9
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCC
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSP 49 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~ 49 (83)
|+.+|.++|||||.|.+.++|++|++.|||..+.| ++|.|+++.+.
T Consensus 61 ~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g--~~l~V~~a~~k 106 (108)
T 2jrs_A 61 DSETGRSKGYGFITFSDSECAKKALEQLNGFELAG--RPMKVGHVTER 106 (108)
T ss_dssp ETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSS--SCCEEECSCSS
T ss_pred cCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC--EEEEEEEcccC
Confidence 56789999999999999999999999999999977 67999998754
No 49
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.11 E-value=6.4e-11 Score=69.66 Aligned_cols=44 Identities=27% Similarity=0.332 Sum_probs=40.1
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecC
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFAN 47 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~ 47 (83)
|+.+|.++|||||.|.+.++|++|++.|||..+.| ++|.|++|.
T Consensus 42 ~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~v~~ak 85 (85)
T 3mdf_A 42 DYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG--RTIRVNLAK 85 (85)
T ss_dssp ETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETT--EECEEEECC
T ss_pred CCCCCccccEEEEEECCHHHHHHHHHHhCCCEECC--cEEEEEEcC
Confidence 56789999999999999999999999999999977 679999873
No 50
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.11 E-value=9.4e-11 Score=67.73 Aligned_cols=42 Identities=19% Similarity=0.208 Sum_probs=37.8
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEec
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFA 46 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA 46 (83)
|+.+|.++|||||.|.+.++|++|++ |||..+.| ++|.|++|
T Consensus 34 ~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g--~~l~v~~A 75 (75)
T 2mss_A 34 DKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINN--KMVECKKA 75 (75)
T ss_dssp CSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSS--CCCEEECC
T ss_pred cCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECC--EEEEEEeC
Confidence 66789999999999999999999998 99999977 67888875
No 51
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.10 E-value=8.1e-11 Score=75.26 Aligned_cols=49 Identities=29% Similarity=0.326 Sum_probs=44.1
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCCC
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSS 52 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~~ 52 (83)
|+.+|.++|||||.|.+.++|++||+.|||..+.| +.|.|.++.+...+
T Consensus 77 ~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~v~~a~~~~~~ 125 (139)
T 1u6f_A 77 DRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILN--KRLKVALAASGHQR 125 (139)
T ss_dssp ETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSS--CEEEEEESSCCCCC
T ss_pred cCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC--eEEEEEECCCCCCC
Confidence 67789999999999999999999999999999976 67999999876554
No 52
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.10 E-value=1.6e-10 Score=74.83 Aligned_cols=46 Identities=22% Similarity=0.429 Sum_probs=41.3
Q ss_pred CCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCC
Q psy6355 4 FTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSS 51 (83)
Q Consensus 4 ~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~ 51 (83)
.+|.+||||||.|.+.++|++||+.|||..+.| ++|.|.||.....
T Consensus 67 ~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~g--r~l~V~~a~~~~~ 112 (127)
T 2a3j_A 67 LSDDNSGKAYIVFATQESAQAFVEAFQGYPFQG--NPLVITFSETPQS 112 (127)
T ss_dssp CCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTT--SCCEEEECCCCCH
T ss_pred cCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCC--CEEEEEEccCcch
Confidence 378999999999999999999999999999977 6899999986543
No 53
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.10 E-value=1.2e-10 Score=71.23 Aligned_cols=48 Identities=17% Similarity=0.206 Sum_probs=42.4
Q ss_pred CCCC-CCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCCC
Q psy6355 2 KGFT-DFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSS 52 (83)
Q Consensus 2 Dk~T-G~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~~ 52 (83)
|+.+ |.++|||||.|.+.++|++|| .|||..+.| ++|.|.++.+...+
T Consensus 49 ~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g--~~l~V~~a~~~~~~ 97 (104)
T 1wi8_A 49 EPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGN--KRIRVDVADQAQDK 97 (104)
T ss_dssp CSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETT--EECEEEECCCCCCC
T ss_pred CCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCC--cEEEEEEccCCCCC
Confidence 5666 999999999999999999999 999999976 67999999876544
No 54
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.09 E-value=7.5e-11 Score=70.78 Aligned_cols=44 Identities=16% Similarity=0.122 Sum_probs=40.3
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecC
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFAN 47 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~ 47 (83)
|+.+|.++|||||.|.+.++|++||+.|||..+.| ++|.|.++.
T Consensus 50 ~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g--r~l~v~~a~ 93 (95)
T 2ek1_A 50 YNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGS--RKVKLSGPS 93 (95)
T ss_dssp ECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETT--EECEEECCC
T ss_pred eCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECC--cEEEEEecc
Confidence 56789999999999999999999999999999977 779999875
No 55
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.09 E-value=2e-10 Score=73.44 Aligned_cols=45 Identities=62% Similarity=0.948 Sum_probs=41.8
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEec
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFA 46 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA 46 (83)
|+.+|.++|||||.|.+.++|++|++.|||..+.|...+|.|+||
T Consensus 123 ~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 123 DQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp CTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred cCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 567899999999999999999999999999999888788999986
No 56
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.08 E-value=1.9e-10 Score=70.35 Aligned_cols=45 Identities=18% Similarity=0.203 Sum_probs=40.1
Q ss_pred CC-CCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCC
Q psy6355 2 KG-FTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSP 49 (83)
Q Consensus 2 Dk-~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~ 49 (83)
|+ .+|.++|||||.|.+.++|++|| .|||..+.| +.|.|+++...
T Consensus 53 ~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g--~~l~V~~a~~~ 98 (100)
T 2j76_E 53 EPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGN--RRIRVDVADQA 98 (100)
T ss_dssp CTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTT--BCCCCEECCCS
T ss_pred cCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECC--eEEEEEeccCC
Confidence 45 58999999999999999999999 899999977 67999998754
No 57
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.08 E-value=8.1e-11 Score=69.47 Aligned_cols=48 Identities=21% Similarity=0.385 Sum_probs=41.1
Q ss_pred CCCCCC-ccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCC
Q psy6355 2 KGFTDF-CRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSS 51 (83)
Q Consensus 2 Dk~TG~-SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~ 51 (83)
|+.++. ++|||||.|.+.++|++|++.|||..+.| +.|.|+++.++..
T Consensus 39 ~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~v~~a~~~~~ 87 (88)
T 4a8x_A 39 ERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDG--QEITATAVLAPWP 87 (88)
T ss_dssp ETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETT--EECEEEEECCCCC
T ss_pred CCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECC--eEEEEEECCCCCC
Confidence 344554 99999999999999999999999999977 6799999977654
No 58
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.07 E-value=2.5e-10 Score=73.33 Aligned_cols=45 Identities=38% Similarity=0.696 Sum_probs=41.9
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEec
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFA 46 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA 46 (83)
|+.+|.++|||||.|.+.++|.+|++.|||..+.|..++|.|+||
T Consensus 124 ~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 124 DKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp CTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred cCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 566899999999999999999999999999999888899999986
No 59
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.07 E-value=2.6e-10 Score=70.64 Aligned_cols=47 Identities=23% Similarity=0.305 Sum_probs=42.2
Q ss_pred CCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCCC
Q psy6355 4 FTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSS 52 (83)
Q Consensus 4 ~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~~ 52 (83)
.+|.++|||||.|.+.++|++||+.|||..+.| ++|.|.++.+...+
T Consensus 62 ~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g--~~l~v~~a~~~~~~ 108 (115)
T 2cpx_A 62 MTGRMRGQAFITFPNKEIAWQALHLVNGYKLYG--KILVIEFGKNKKQR 108 (115)
T ss_dssp ECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSS--CBCEEEECCCCSCC
T ss_pred CCCccceEEEEEECCHHHHHHHHHHhCCCEeCC--cEEEEEEccCCCCC
Confidence 478999999999999999999999999999966 67999999876554
No 60
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.07 E-value=3.2e-10 Score=69.14 Aligned_cols=46 Identities=28% Similarity=0.463 Sum_probs=42.0
Q ss_pred CCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCCC
Q psy6355 5 TDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSS 52 (83)
Q Consensus 5 TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~~ 52 (83)
+|.++|||||.|.+.++|++||+.|||..+.| ++|.|.++.+...+
T Consensus 51 ~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g--~~l~V~~a~~~~~~ 96 (103)
T 2d9p_A 51 GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT--KPLYVALAQRKEER 96 (103)
T ss_dssp SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSS--SBCEEEECSSCCCC
T ss_pred CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCC--cEEEEEEecccccC
Confidence 78999999999999999999999999999976 67999999876655
No 61
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.04 E-value=4.3e-10 Score=68.37 Aligned_cols=66 Identities=21% Similarity=0.378 Sum_probs=47.5
Q ss_pred ccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCCCcccccchhhhccchhhhhcccCCCCCC
Q psy6355 8 CRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSSNKVIAPLAAYLTPQAAAARRFGGPIHH 79 (83)
Q Consensus 8 SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (83)
++|||||.|.+.++|++|++.|||..+.| ++|.|+++.+....... ...+..... ...-|-|+++|
T Consensus 36 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~V~~a~~~~~~~~~-~~~~~~~~~---~~~ifvg~L~h 101 (101)
T 2hvz_A 36 PPGFAFVEFEDPRDAEDAVRGLDGKVICG--SRVRVELSTGMPRRSRF-DRPPARRKL---LEVLFNGPLEH 101 (101)
T ss_dssp SSSEEEEECSSHHHHHHHHHHHHHSCSSS--CCCEEEESSSCCCSSCC-CSCCCSCCC---CSCCCSCCCCC
T ss_pred CCCEEEEEECCHHHHHHHHHHHCCCeECC--cEEEEEEccCCCCcccC-CCCCccccC---CCceecCCCCC
Confidence 79999999999999999999999999977 56999999876544222 222222211 13445677765
No 62
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.04 E-value=2.5e-10 Score=71.61 Aligned_cols=42 Identities=26% Similarity=0.285 Sum_probs=38.6
Q ss_pred CCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCC
Q psy6355 5 TDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANS 48 (83)
Q Consensus 5 TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~ 48 (83)
++.++||+||.|.+.++|++|++.|||..+.| ++|.|.++..
T Consensus 52 ~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~G--r~i~v~~a~~ 93 (105)
T 2pe8_A 52 PDDEAVRIFLEFERVESAIKAVVDLNGRYFGG--RVVKACFYNL 93 (105)
T ss_dssp CTTTSEEEEEEESSHHHHHHHHHHHTTCEETT--EECEEEECCH
T ss_pred CCCCcEEEEEEECCHHHHHHHHHHHCCCEECC--cEEEEEEcCH
Confidence 47899999999999999999999999999977 7899999864
No 63
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.04 E-value=1.7e-10 Score=70.72 Aligned_cols=43 Identities=16% Similarity=0.367 Sum_probs=39.6
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecC
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFAN 47 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~ 47 (83)
|+ +|.++|||||.|.+.++|++||+.|||..+.| ++|.|+++.
T Consensus 64 ~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~V~~a~ 106 (107)
T 3ulh_A 64 DR-SGRSLGTADVHFERKADALKAMKQYNGVPLDG--RPMNIQLVT 106 (107)
T ss_dssp CT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETT--EECEEEEEC
T ss_pred CC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCC--cEEEEEEeC
Confidence 56 89999999999999999999999999999977 779999875
No 64
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.04 E-value=3.2e-10 Score=73.36 Aligned_cols=48 Identities=25% Similarity=0.508 Sum_probs=43.0
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCC
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSS 51 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~ 51 (83)
|+.+|.++|||||.|.+.++|++||+.|||..+.| ++|.|+++.....
T Consensus 82 ~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g--~~l~V~~a~~~~~ 129 (135)
T 2lea_A 82 DRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDG--RELRVQMARYGRP 129 (135)
T ss_dssp CSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSS--SCCEEEECCCCCC
T ss_pred cCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC--EEEEEEECCCCCC
Confidence 67789999999999999999999999999999977 6799999976533
No 65
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.04 E-value=1.8e-10 Score=68.84 Aligned_cols=44 Identities=20% Similarity=0.117 Sum_probs=39.8
Q ss_pred CCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCC
Q psy6355 4 FTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPS 50 (83)
Q Consensus 4 ~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~ 50 (83)
.+|.++|||||.|.+.++|++||+ |||..+.| +.|.|.++....
T Consensus 45 ~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~g--r~i~v~~a~~~~ 88 (91)
T 2dgw_A 45 AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGG--RYIEVFREKSGP 88 (91)
T ss_dssp TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETT--EEEEEEEESSCC
T ss_pred CCCCCceEEEEEECCHHHHHHHHH-hCCceeCC--cEEEEEECCcCC
Confidence 579999999999999999999999 99999977 689999987654
No 66
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.04 E-value=3.3e-10 Score=67.54 Aligned_cols=46 Identities=26% Similarity=0.355 Sum_probs=41.2
Q ss_pred CCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCC
Q psy6355 4 FTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSS 51 (83)
Q Consensus 4 ~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~ 51 (83)
.+|.++|||||.|.+.++|++||+.|||..+.| ++|.|+++.+...
T Consensus 43 ~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g--~~l~v~~a~~~~~ 88 (92)
T 2dgv_A 43 ENGKSKGCGVVKFESPEVAERACRMMNGMKLSG--REIDVRIDRNASG 88 (92)
T ss_dssp SSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTT--BCCCCEECSCCSS
T ss_pred cCCCcceEEEEEECCHHHHHHHHHHhCCCEECC--cEEEEEEcCCCCC
Confidence 478999999999999999999999999999977 6799999987644
No 67
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.03 E-value=2.1e-10 Score=67.92 Aligned_cols=45 Identities=16% Similarity=0.341 Sum_probs=40.8
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCC
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSP 49 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~ 49 (83)
|+.+|.++|||||.|.+.++|++|+ .|||..+.| ++|.|.++.+.
T Consensus 41 ~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g--~~l~V~~a~~~ 85 (89)
T 3ucg_A 41 DKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRG--RQIKVIPKRTN 85 (89)
T ss_dssp SCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETT--EECEEEETTTT
T ss_pred cCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECC--cEEEEEEccCC
Confidence 6778999999999999999999999 999999977 67999998754
No 68
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.03 E-value=1.4e-10 Score=68.30 Aligned_cols=40 Identities=13% Similarity=0.114 Sum_probs=34.9
Q ss_pred CCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEE
Q psy6355 3 GFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITV 43 (83)
Q Consensus 3 k~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V 43 (83)
+.+|.++|||||.|.+.++|++||+.|||..+.|. ++|.|
T Consensus 41 ~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~-~~l~V 80 (81)
T 2krb_A 41 EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ-HTFRV 80 (81)
T ss_dssp CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSS-SCCCC
T ss_pred CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCc-eeEEe
Confidence 56899999999999999999999999999999773 15654
No 69
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.03 E-value=3.8e-10 Score=71.11 Aligned_cols=47 Identities=17% Similarity=0.325 Sum_probs=42.1
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCC
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSS 51 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~ 51 (83)
|+ +|.++|||||.|.+.++|++|++.|||..+.| ++|.|.+|.....
T Consensus 70 ~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g--~~l~V~~a~~~~~ 116 (124)
T 2kt5_A 70 DR-SGRSLGTADVHFERRADALKAMKQYKGVPLDG--RPMDIQLVASQID 116 (124)
T ss_dssp CS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSS--CEEEEEEECCTTC
T ss_pred CC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECC--cEEEEEEeCCCCC
Confidence 56 89999999999999999999999999999977 6799999976543
No 70
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.03 E-value=3.3e-10 Score=68.86 Aligned_cols=46 Identities=20% Similarity=0.252 Sum_probs=41.5
Q ss_pred CCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCC
Q psy6355 4 FTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSS 51 (83)
Q Consensus 4 ~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~ 51 (83)
.+|.++|||||.|.+.++|++||+.|||..+.| ++|.|.++.+...
T Consensus 48 ~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g--~~l~v~~a~~~~~ 93 (101)
T 2fc9_A 48 QNGKSKGYAFIEFASFEDAKEALNSCNKREIEG--RAIRLELQGPRGS 93 (101)
T ss_dssp SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETT--EEEEEEECSSCCC
T ss_pred CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCC--eEEEEEEcCCCCC
Confidence 578999999999999999999999999999976 7899999987644
No 71
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=3.9e-10 Score=69.75 Aligned_cols=48 Identities=29% Similarity=0.423 Sum_probs=42.1
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCCC
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSS 52 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~~ 52 (83)
|+ +|.++|||||.|.+.++|++||+.|||..+.| +.|.|+++.....+
T Consensus 50 ~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~v~~a~~~~~~ 97 (114)
T 2do0_A 50 DK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFD--RPMHVKMDERALPK 97 (114)
T ss_dssp CT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETT--EECEEEECSCCCCC
T ss_pred CC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC--CEEEEEEcccCCCC
Confidence 45 58999999999999999999999999999976 67999999865444
No 72
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.03 E-value=2e-10 Score=70.96 Aligned_cols=45 Identities=11% Similarity=0.093 Sum_probs=40.4
Q ss_pred CCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCc-ceEEEecCCC
Q psy6355 3 GFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNE-PITVKFANSP 49 (83)
Q Consensus 3 k~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~-~l~V~fA~~~ 49 (83)
+.+|.+||||||.|.+.++|++||+.|||..+.| + +|.|.++...
T Consensus 55 ~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g--~~~l~V~~a~~~ 100 (105)
T 2nlw_A 55 EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK--QHTFRVNLFTDF 100 (105)
T ss_dssp CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECST--TCEEEEECSCCC
T ss_pred CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCC--CceEEEEEcchH
Confidence 4689999999999999999999999999999977 5 7999998643
No 73
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.02 E-value=1.4e-10 Score=70.10 Aligned_cols=46 Identities=17% Similarity=0.445 Sum_probs=40.8
Q ss_pred CCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCCC
Q psy6355 5 TDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSS 52 (83)
Q Consensus 5 TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~~ 52 (83)
||.++|||||.|.+.++|++|++.|||..+.| ++|.|+++.+....
T Consensus 46 t~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~V~~a~~~~~~ 91 (98)
T 2cpf_A 46 VLLSMGFGFVEYKKPEQAQKALKQLQGHTVDG--HKLEVRISERATKP 91 (98)
T ss_dssp CEEEEEEEEEEESSHHHHHHHHHHSTTCEETT--EECEEECSSCSSCC
T ss_pred CcCcccEEEEEECCHHHHHHHHHHhCCCeeCC--eEEEEEEccCCCCC
Confidence 66999999999999999999999999999976 68999999765443
No 74
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.02 E-value=1.3e-10 Score=72.51 Aligned_cols=43 Identities=26% Similarity=0.430 Sum_probs=39.7
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEec
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFA 46 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA 46 (83)
|+.+|.++|||||.|.+.++|++||+.|||..+.| +.|.|+++
T Consensus 75 ~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g--~~l~V~~a 117 (118)
T 2khc_A 75 DKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGT--KRLKVQLK 117 (118)
T ss_dssp CSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETT--EECCEEEC
T ss_pred CCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECC--EEEEEEec
Confidence 67889999999999999999999999999999977 67899886
No 75
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.02 E-value=3.1e-10 Score=74.02 Aligned_cols=49 Identities=18% Similarity=0.255 Sum_probs=44.0
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCCC
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSS 52 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~~ 52 (83)
|+.||.++|||||.|.+.++|++||+.|||..+.| ++|.|.++.+....
T Consensus 74 ~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g--~~l~V~~a~~~~~~ 122 (156)
T 1h2v_Z 74 DKMKKTACGFCFVEYYSRADAENAMRYINGTRLDD--RIIRTDWDAGFKEG 122 (156)
T ss_dssp CTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETT--EECEEEEESCCCTT
T ss_pred cCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC--eEEEEEECCCCCCc
Confidence 67789999999999999999999999999999976 77999999876544
No 76
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.02 E-value=3.4e-10 Score=71.08 Aligned_cols=48 Identities=19% Similarity=0.342 Sum_probs=42.3
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCCC
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSS 52 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~~ 52 (83)
|+.+|.++|||||.|.+.++|++|| .|||..+.| +.|.|.++......
T Consensus 71 ~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g--~~l~V~~a~~~~~~ 118 (124)
T 2jwn_A 71 DKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRG--RTIKVLPKRTNMPG 118 (124)
T ss_dssp ECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETT--EECEEEESSCCCSS
T ss_pred cCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECC--eEEEEEECCCCCCC
Confidence 5678999999999999999999999 899999977 67999998765443
No 77
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.02 E-value=1.9e-10 Score=71.70 Aligned_cols=39 Identities=18% Similarity=0.265 Sum_probs=36.2
Q ss_pred CccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecC
Q psy6355 7 FCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFAN 47 (83)
Q Consensus 7 ~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~ 47 (83)
.+||||||+|.+.++|++||+.|||.++.| ++|.|++|.
T Consensus 41 ~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~g--r~I~V~~A~ 79 (89)
T 2wbr_A 41 LNQGIALCKYTTREEANKAQMALNNCVLAN--TTIFAESPS 79 (89)
T ss_dssp TTTTEEEEEESSHHHHHHHHHHHTTEEETT--EEEEEECCC
T ss_pred CCCcEEEEEECCHHHHHHHHHHhcCCEECC--cEEEEEECC
Confidence 489999999999999999999999999977 789999993
No 78
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.02 E-value=3.1e-10 Score=72.43 Aligned_cols=45 Identities=24% Similarity=0.454 Sum_probs=41.2
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCC
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANS 48 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~ 48 (83)
|+.+|.++|||||.|.+.++|++|++.|||..+.| ++|.|.||.+
T Consensus 122 ~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g--~~i~v~~a~~ 166 (166)
T 3md3_A 122 DMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNG--RPLRINWAAK 166 (166)
T ss_dssp CTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETT--EECEEEESCC
T ss_pred cCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCC--cEEEEEecCC
Confidence 67789999999999999999999999999999976 7899999863
No 79
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.01 E-value=2.1e-10 Score=72.80 Aligned_cols=44 Identities=27% Similarity=0.348 Sum_probs=39.3
Q ss_pred CCCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEec
Q psy6355 1 MKGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFA 46 (83)
Q Consensus 1 ~Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA 46 (83)
.|+.+|.++|||||.|.+.++|++|++.|||..+.| ++|.|++|
T Consensus 97 ~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~v~~A 140 (140)
T 2ku7_A 97 LDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG--RTIRVNLA 140 (140)
T ss_dssp CCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETT--EEEEEEC-
T ss_pred ecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECC--EEEEEEeC
Confidence 367889999999999999999999999999999977 67999875
No 80
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.01 E-value=5.3e-10 Score=67.74 Aligned_cols=44 Identities=18% Similarity=0.224 Sum_probs=39.4
Q ss_pred CCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCC
Q psy6355 5 TDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPS 50 (83)
Q Consensus 5 TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~ 50 (83)
++.++|||||.|.+.++|++||+.|||..+.| +.|.|+++.+..
T Consensus 52 ~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~V~~a~~~~ 95 (97)
T 2e5j_A 52 WQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGT--DTLRVALARQQR 95 (97)
T ss_dssp EETTTTEEEEECSSHHHHHHHHHHHTTCCSSS--SCCEEEECCCCC
T ss_pred cCCCCcEEEEEECCHHHHHHHHHHhCCCEECC--cEEEEEEcCCCC
Confidence 46789999999999999999999999999977 679999997653
No 81
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.01 E-value=5e-10 Score=69.72 Aligned_cols=43 Identities=16% Similarity=0.231 Sum_probs=38.3
Q ss_pred CCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCC
Q psy6355 6 DFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPS 50 (83)
Q Consensus 6 G~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~ 50 (83)
+.++|||||.|.+.++|++||+.|||..+.| ++|.|.+|.+..
T Consensus 60 ~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g--r~l~V~~a~~k~ 102 (111)
T 2cpi_A 60 QGPSASAYVTYIRSEDALRAIQCVNNVVVDG--RTLKASLGTTKY 102 (111)
T ss_dssp SCCCEEEEEEESSHHHHHHHHHHHTTEEETT--EEEEEESCCCCS
T ss_pred CCCCeEEEEEECcHHHHHHHHHHhCCCEECC--EEEEEEeccccc
Confidence 3567999999999999999999999999977 689999987654
No 82
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.00 E-value=4.4e-10 Score=70.01 Aligned_cols=49 Identities=16% Similarity=0.221 Sum_probs=41.7
Q ss_pred CCCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCCC
Q psy6355 1 MKGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSS 52 (83)
Q Consensus 1 ~Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~~ 52 (83)
.|+.||.++|||||.|.+.++|++||+.+ +..+.| +.|.|+++.....+
T Consensus 59 ~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g--~~l~V~~a~~~~~~ 107 (109)
T 2rs2_A 59 RDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDS--KTIDPKVAFPRRAQ 107 (109)
T ss_dssp CCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETT--EEEEEEECCCCCCC
T ss_pred ECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCC--EEEEEEEccCCCCC
Confidence 36788999999999999999999999986 467877 67999999876544
No 83
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.00 E-value=7.9e-10 Score=73.69 Aligned_cols=49 Identities=20% Similarity=0.240 Sum_probs=43.6
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCCC
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSS 52 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~~ 52 (83)
|+.+|.++|||||.|.+.++|.+|++.|||..+.| ++|.|.++.++...
T Consensus 160 ~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g--~~i~V~~a~~~~~~ 208 (216)
T 2qfj_A 160 DPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGG--QYLRVGKAVTPPMP 208 (216)
T ss_dssp CTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSS--SBCEEEECSSCSST
T ss_pred cCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCC--cEEEEEEecCCCCC
Confidence 56789999999999999999999999999999977 67999999876443
No 84
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.99 E-value=4e-10 Score=65.08 Aligned_cols=42 Identities=19% Similarity=0.301 Sum_probs=37.9
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEec
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFA 46 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA 46 (83)
|+.+|.++|||||.|.+.++|++|++.|| ..+.| ++|.|++|
T Consensus 35 ~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g--~~l~v~~a 76 (77)
T 1uaw_A 35 DPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDS--KTIDPKVA 76 (77)
T ss_dssp CCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSS--CCCEEEEC
T ss_pred CCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCC--EEEEEEec
Confidence 67789999999999999999999999999 78877 56888876
No 85
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=98.99 E-value=2.1e-10 Score=80.21 Aligned_cols=47 Identities=9% Similarity=0.068 Sum_probs=42.7
Q ss_pred CCCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCC
Q psy6355 1 MKGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSP 49 (83)
Q Consensus 1 ~Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~ 49 (83)
+|+.||.+||||||.|.+.++|++||+.|||+.+.| +.|.|++|.+.
T Consensus 104 ~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~G--r~l~V~~a~~~ 150 (229)
T 3q2s_C 104 ENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHG--QNPVVTPVNKQ 150 (229)
T ss_dssp ECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTT--BCCEEEECCHH
T ss_pred ecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECC--EEeEEEECCCC
Confidence 378899999999999999999999999999999977 67999998643
No 86
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=98.99 E-value=4.2e-10 Score=70.55 Aligned_cols=45 Identities=27% Similarity=0.411 Sum_probs=39.4
Q ss_pred CCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCCC
Q psy6355 6 DFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSS 52 (83)
Q Consensus 6 G~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~~ 52 (83)
+.+||||||.|.+.++|++||+.|||..+.| ++|.|.++.+...+
T Consensus 42 ~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g--~~i~V~~a~~~~~~ 86 (115)
T 4f25_A 42 NGSKGYGFVHFETQEAAERAIEKMNGMLLND--RKVFVGRFKSRKER 86 (115)
T ss_dssp TEEEEEEEEEESCHHHHHHHHHHHTTCEETT--EECEEEESSCCCC-
T ss_pred CCCCceEEEEECCHHHHHHHHHHcCCCEECC--EEEEEEECCCcccc
Confidence 5689999999999999999999999999977 68999998765544
No 87
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.99 E-value=8e-10 Score=67.35 Aligned_cols=46 Identities=26% Similarity=0.407 Sum_probs=40.6
Q ss_pred CCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCCCc
Q psy6355 6 DFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSSN 53 (83)
Q Consensus 6 G~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~~~ 53 (83)
+.++|||||.|.+.++|++|++.|||..+.| ++|.|.++..+..+.
T Consensus 52 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~V~~a~~~~~~~ 97 (103)
T 2cqi_A 52 TSNDPYCFVEFYEHRDAAAALAAMNGRKILG--KEVKVNWATTPSSQK 97 (103)
T ss_dssp CSSCCEEEEEESSHHHHHHHHHHHTTEEETT--EEEEEEECCCTTCCC
T ss_pred CCCCCEEEEEECCHHHHHHHHHHhCCCCcCC--CeEEEEECCCCcccc
Confidence 4479999999999999999999999999976 789999998876553
No 88
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.99 E-value=3e-10 Score=68.36 Aligned_cols=46 Identities=15% Similarity=0.374 Sum_probs=40.9
Q ss_pred CCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCC
Q psy6355 4 FTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSS 51 (83)
Q Consensus 4 ~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~ 51 (83)
.+|.++|||||.|.+.++|++|++.|||..+.| ++|.|.++.+...
T Consensus 48 ~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~v~~a~~~~~ 93 (96)
T 1fjc_A 48 QDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDG--RSVSLYYTGEKGG 93 (96)
T ss_dssp ETTEEEEEEEEEESSHHHHHHHHHHTTEEEETT--EEEEEEECSSSCC
T ss_pred CCCCcceEEEEEECCHHHHHHHHHHhCCCEECC--eEEEEEEcCCCCC
Confidence 468899999999999999999999999999977 6799999976543
No 89
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=98.54 E-value=4.8e-11 Score=74.53 Aligned_cols=49 Identities=27% Similarity=0.278 Sum_probs=43.3
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCCC
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSS 52 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~~ 52 (83)
|+.+|.++|||||.|.+.++|++||+.|||..+.| ++|.|+++.+....
T Consensus 50 ~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g--~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 50 DRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG--NPIKVSFATRRADF 98 (116)
Confidence 66789999999999999999999999999999977 67999998765443
No 90
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=98.98 E-value=7.9e-10 Score=71.23 Aligned_cols=43 Identities=30% Similarity=0.556 Sum_probs=39.0
Q ss_pred CCCccceEEEEeCCHHHHHHHHHHhCCCCC-CCCCcceEEEecC
Q psy6355 5 TDFCRYLGFIRFDQRIEAERAIQELNGTIP-KGSNEPITVKFAN 47 (83)
Q Consensus 5 TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~-~G~~~~l~V~fA~ 47 (83)
+|.++|||||.|.+.++|++|++.|||..+ .|+.++|.|+||+
T Consensus 132 ~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 132 DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 589999999999999999999999999875 5556899999985
No 91
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=98.98 E-value=3.7e-10 Score=74.61 Aligned_cols=49 Identities=20% Similarity=0.305 Sum_probs=42.7
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCCC
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSS 52 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~~ 52 (83)
|+.||.++|||||.|.+.++|++||+.|||..+.| ++|.|.++.+...+
T Consensus 107 ~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g--~~l~V~~a~~~~~~ 155 (165)
T 1rk8_A 107 DRRTGFSKGYALVEYETHKQALAAKEALNGAEIMG--QTIQVDWCFVKGPK 155 (165)
T ss_dssp CTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETT--EECEEEESEECC--
T ss_pred cCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECC--EEEEEEEecCCCCC
Confidence 67799999999999999999999999999999977 68999998765444
No 92
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.98 E-value=6.8e-10 Score=67.39 Aligned_cols=40 Identities=18% Similarity=0.209 Sum_probs=36.6
Q ss_pred cceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCC
Q psy6355 9 RYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPS 50 (83)
Q Consensus 9 rG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~ 50 (83)
||||||.|.+.++|++||+.|||..+.| ++|.|++|.+..
T Consensus 52 rg~afV~f~~~~~A~~Ai~~l~g~~~~g--r~l~V~~a~~~~ 91 (96)
T 2dgx_A 52 QLKAVVQMENLQDAIGAVNSLHRYKIGS--KKILVSLATGAS 91 (96)
T ss_dssp TCCEEEEESSHHHHHHHHHHHTTEEETT--EEEEEEECCCSS
T ss_pred CeEEEEEECCHHHHHHHHHHhCCCEECC--eEEEEEEcCCCC
Confidence 9999999999999999999999999977 789999997653
No 93
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.98 E-value=5.9e-10 Score=69.38 Aligned_cols=46 Identities=30% Similarity=0.339 Sum_probs=41.0
Q ss_pred CCCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCC
Q psy6355 1 MKGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSP 49 (83)
Q Consensus 1 ~Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~ 49 (83)
.|+.+|.++|||||.|.+.++|++||+.||+ .+.| ++|.|.++...
T Consensus 51 ~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g--~~l~V~~a~~~ 96 (116)
T 2cqd_A 51 TDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDG--RKANVNLAYLG 96 (116)
T ss_dssp CCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETT--EECEEEESTTT
T ss_pred EcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCC--EEEEEEEcccC
Confidence 3678899999999999999999999999998 7866 78999999754
No 94
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=98.97 E-value=5.1e-10 Score=69.91 Aligned_cols=40 Identities=25% Similarity=0.429 Sum_probs=36.8
Q ss_pred CCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEec
Q psy6355 5 TDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFA 46 (83)
Q Consensus 5 TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA 46 (83)
+|.+||||||.|.+.++|++|++.|||..+.| ++|.|.|+
T Consensus 64 ~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~G--r~i~v~~s 103 (104)
T 1jmt_A 64 GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNG--QPIHAELS 103 (104)
T ss_dssp SSSSEEEEEEEESCHHHHHHHHHHHTTCEETT--EECCEEEC
T ss_pred CCCccEEEEEEECCHHHHHHHHHHHCCCEECC--EEEEEEEc
Confidence 47899999999999999999999999999977 67888886
No 95
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=98.97 E-value=4.4e-10 Score=67.35 Aligned_cols=44 Identities=30% Similarity=0.317 Sum_probs=39.2
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCC
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANS 48 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~ 48 (83)
|+. |.++|||||.|.+.++|++|++.|||..+.| ++|.|+++..
T Consensus 51 ~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~V~~a~~ 94 (95)
T 2ywk_A 51 DRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYG--RPINVSGPSS 94 (95)
T ss_dssp CTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETT--EECEEECCCC
T ss_pred CCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECC--CEEEEEEcCC
Confidence 453 8999999999999999999999999999976 7799998853
No 96
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.97 E-value=1.7e-10 Score=68.05 Aligned_cols=44 Identities=20% Similarity=0.337 Sum_probs=37.6
Q ss_pred CCCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEec
Q psy6355 1 MKGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFA 46 (83)
Q Consensus 1 ~Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA 46 (83)
.|+.+|.++|||||.|.+.++|++|++.|||..+.| +.|.|+++
T Consensus 39 ~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~~~~~~~ 82 (85)
T 1x4e_A 39 LDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQA--QMAKQSGP 82 (85)
T ss_dssp CCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCE--ESCCSSCC
T ss_pred ecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEee--EEEeecCC
Confidence 367789999999999999999999999999999976 45655543
No 97
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.96 E-value=3.3e-10 Score=71.67 Aligned_cols=44 Identities=16% Similarity=0.110 Sum_probs=39.8
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCC
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANS 48 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~ 48 (83)
|+.+|.++|||||.|.+.++|++||+ |||..+.| +.|.|.++..
T Consensus 60 ~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~g--r~i~V~~a~~ 103 (124)
T 1wel_A 60 YGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGN--RFIQVHPITK 103 (124)
T ss_dssp ECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTT--SCBEEEEECH
T ss_pred ECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECC--cEEEEEECCH
Confidence 56789999999999999999999999 99999977 6799998864
No 98
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.96 E-value=3.2e-10 Score=70.38 Aligned_cols=46 Identities=20% Similarity=0.242 Sum_probs=41.2
Q ss_pred CCCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCC
Q psy6355 1 MKGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSP 49 (83)
Q Consensus 1 ~Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~ 49 (83)
.|+.+|.++|||||.|.+.++|++|| .|||..+.| ++|.|.++...
T Consensus 59 ~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g--~~l~V~~a~~~ 104 (114)
T 2cq4_A 59 SDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLG--VPIIVQASQAE 104 (114)
T ss_dssp CSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETT--EEEEEEEHHHH
T ss_pred ecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCC--eEEEEEecCCC
Confidence 37788999999999999999999999 999999977 67999998653
No 99
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=98.95 E-value=3e-10 Score=68.33 Aligned_cols=45 Identities=20% Similarity=0.318 Sum_probs=40.3
Q ss_pred CCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCC
Q psy6355 5 TDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSS 51 (83)
Q Consensus 5 TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~ 51 (83)
+|.++|||||.|.+.++|++|++.|||..+.| ++|.|.++.+...
T Consensus 47 ~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g--~~l~v~~a~~~~~ 91 (97)
T 1nu4_A 47 SLKMRGQAFVIFKEVSSATNALRSMQGFPFYD--KPMRIQYAKTDSD 91 (97)
T ss_dssp HHHHTTCEEEEESSHHHHHHHHHHHTTCEETT--EECEEEECSSCCT
T ss_pred CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECC--cEEEEEEccCCCc
Confidence 46789999999999999999999999999976 7899999987654
No 100
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.95 E-value=1.1e-09 Score=67.41 Aligned_cols=46 Identities=22% Similarity=0.247 Sum_probs=40.4
Q ss_pred CCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCC
Q psy6355 4 FTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSS 51 (83)
Q Consensus 4 ~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~ 51 (83)
.++.++|||||.|.+.++|++||+.|||..+.| ++|.|.++.....
T Consensus 56 ~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g--~~l~V~~a~~~~~ 101 (109)
T 1x4a_A 56 NRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDG--YRLRVEFPRSGRG 101 (109)
T ss_dssp CSSSSSCCEEEEESCHHHHHHHHHHHTTCEETT--EECEEECCCCCCC
T ss_pred ECCCCCcEEEEEECCHHHHHHHHHHcCCCEECC--eEEEEEEcccCCC
Confidence 356789999999999999999999999999976 6899999976543
No 101
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.95 E-value=7.7e-10 Score=68.47 Aligned_cols=45 Identities=7% Similarity=-0.020 Sum_probs=39.1
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCC
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPS 50 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~ 50 (83)
|+ +|++||||||.|.+.++|++|| .+|++.+.| +.|.|..+....
T Consensus 49 d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~g--r~i~V~~~~~~~ 93 (102)
T 1wez_A 49 GP-DGRVTGEADVEFATHEDAVAAM-AKDKANMQH--RYVELFLNSTAG 93 (102)
T ss_dssp SS-SSCEEEEEEEECSSSHHHHHHH-TTSSCCSSS--SCCEEEEECCCC
T ss_pred CC-CCCEeeEEEEEECCHHHHHHHH-HhCCCeECC--cEEEEEECCCCC
Confidence 66 8999999999999999999999 579999976 679998876553
No 102
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=98.93 E-value=6.5e-10 Score=71.54 Aligned_cols=47 Identities=28% Similarity=0.398 Sum_probs=41.4
Q ss_pred CCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCCC
Q psy6355 4 FTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSS 52 (83)
Q Consensus 4 ~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~~ 52 (83)
.+|.++|||||.|.+.++|++||+.|||..+.| ++|.|.+|.....+
T Consensus 87 ~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g--~~l~V~~a~~~~~~ 133 (143)
T 3egn_A 87 KEGRMKGQAFIGLPNEKAAAKALKEANGYVLFG--KPMVVQFARSARPK 133 (143)
T ss_dssp EETTTEEEEEEECSSHHHHHHHHHHHTTBEETT--EECEEEECCCSCC-
T ss_pred cCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCC--cEEEEEECCCCCCc
Confidence 479999999999999999999999999999977 78999999765443
No 103
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=98.93 E-value=8.1e-10 Score=63.59 Aligned_cols=43 Identities=19% Similarity=0.166 Sum_probs=37.3
Q ss_pred CCCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEec
Q psy6355 1 MKGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFA 46 (83)
Q Consensus 1 ~Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA 46 (83)
.|+.+|.++|||||.|.+.++|++|++. ++..+.| +.|.|++|
T Consensus 33 ~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g--~~l~v~~a 75 (75)
T 1iqt_A 33 MDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGL--SKCEIKVA 75 (75)
T ss_dssp CSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTT--BCCCEEEC
T ss_pred ecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECC--EEEEEEEC
Confidence 3678899999999999999999999985 8888977 56888765
No 104
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=98.93 E-value=1.5e-09 Score=69.70 Aligned_cols=45 Identities=24% Similarity=0.197 Sum_probs=40.5
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCC
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSP 49 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~ 49 (83)
|+.+|.++|||||.|.+.++|++|++ |||..+.| ++|.|++|.+.
T Consensus 122 ~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g--~~i~V~~a~pk 166 (167)
T 2cjk_A 122 DKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKD--RKIEIKRAEPR 166 (167)
T ss_dssp SSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSS--SCEEEEECCCC
T ss_pred cCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCC--eEEEEeecCCC
Confidence 66789999999999999999999998 89999977 67999998754
No 105
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=98.93 E-value=1.1e-09 Score=68.56 Aligned_cols=41 Identities=17% Similarity=0.227 Sum_probs=37.5
Q ss_pred CCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCC
Q psy6355 6 DFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANS 48 (83)
Q Consensus 6 G~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~ 48 (83)
+.++|++||.|.+.++|.+|++.|||..+.| ++|.|.|++.
T Consensus 56 ~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~G--R~i~v~~~~~ 96 (105)
T 3v4m_A 56 VPGCGKIFVEFTSVFDCQKAMQGLTGRKFAN--RVVVTKYCDP 96 (105)
T ss_dssp CTTTTEEEEEESSHHHHHHHHHHHTTCEETT--EECEEEEECH
T ss_pred cCCcEEEEEEECCHHHHHHHHHHhCCCEeCC--CEEEEEEeCH
Confidence 4789999999999999999999999999977 7899999764
No 106
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.92 E-value=9.3e-10 Score=68.45 Aligned_cols=49 Identities=20% Similarity=0.224 Sum_probs=42.7
Q ss_pred CCCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCCC
Q psy6355 1 MKGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSS 52 (83)
Q Consensus 1 ~Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~~ 52 (83)
.|+.+|.++|||||.|.+.++|++||+. ||..+.| +.|.|.++.+....
T Consensus 61 ~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g--~~l~V~~a~~~~~~ 109 (116)
T 1x4b_A 61 RDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDG--RVVEPKRAVAREES 109 (116)
T ss_dssp CCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETT--EEEEEECCSSCCCC
T ss_pred ECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECC--EEEEEEECCCCccC
Confidence 3678899999999999999999999998 9988977 67999998766443
No 107
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.91 E-value=1.8e-09 Score=67.20 Aligned_cols=43 Identities=16% Similarity=0.169 Sum_probs=38.0
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCC
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANS 48 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~ 48 (83)
|+. |.+||||||.|.+.++|++||+ +||..+.| ++|.|.++..
T Consensus 46 d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~g--r~l~V~~~~~ 88 (103)
T 1s79_A 46 TLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKE--TDLLILFKDD 88 (103)
T ss_dssp CCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTT--TTCEEEEHHH
T ss_pred CCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECC--EEEEEEEchH
Confidence 665 9999999999999999999999 89999977 6789987653
No 108
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=98.90 E-value=8.2e-10 Score=71.28 Aligned_cols=44 Identities=20% Similarity=0.234 Sum_probs=40.1
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecC
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFAN 47 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~ 47 (83)
|+.+|.++|||||.|.+.++|++|++.|||..+.| ++|.|++|.
T Consensus 129 ~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g--~~l~V~~As 172 (172)
T 2g4b_A 129 DSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGD--KKLLVQRAS 172 (172)
T ss_dssp CTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETT--EECEEEECC
T ss_pred cCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECC--eEEEEEeCC
Confidence 56789999999999999999999999999999977 679999873
No 109
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=98.90 E-value=9.7e-10 Score=72.38 Aligned_cols=48 Identities=19% Similarity=0.205 Sum_probs=43.0
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCC
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSS 51 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~ 51 (83)
|+.+|.++|||||.|.+.++|++|++.|||..+.| ++|.|.++.+...
T Consensus 149 ~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 149 DSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGD--KKLLVQRASVGAK 196 (198)
T ss_dssp CTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETT--EECEEEESCCCCC
T ss_pred cCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECC--EEEEEEECCCCCC
Confidence 56689999999999999999999999999999977 6799999987644
No 110
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.89 E-value=3.1e-09 Score=64.65 Aligned_cols=45 Identities=29% Similarity=0.497 Sum_probs=39.7
Q ss_pred CCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCCC
Q psy6355 6 DFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSS 52 (83)
Q Consensus 6 G~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~~ 52 (83)
+.++|||||.|.+.++|++||+.|||..+.| ++|.|.++.+...+
T Consensus 52 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~v~~a~~~~~~ 96 (103)
T 2cq3_A 52 RGSKGFGFVTFENSADADRAREKLHGTVVEG--RKIEVNNATARVMT 96 (103)
T ss_dssp TTTCCEEEEEESCHHHHHHHHHHHTTCEETT--EECEEEECCSSCCC
T ss_pred CCCcEEEEEEECCHHHHHHHHHHhCCCEECC--EEEEEEEcccCCCC
Confidence 3489999999999999999999999999977 77999999876544
No 111
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=98.89 E-value=1.5e-09 Score=67.15 Aligned_cols=43 Identities=12% Similarity=0.037 Sum_probs=38.0
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCC
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANS 48 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~ 48 (83)
|+. |.++|||||.|.+.++|++||+ |||..+.| +.|.|.++.+
T Consensus 49 ~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~g--r~i~V~~a~~ 91 (107)
T 2lmi_A 49 NRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQ--RYVEVYEINN 91 (107)
T ss_dssp CTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSS--SCCCCEECCH
T ss_pred CCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCC--eEEEEEECCH
Confidence 665 9999999999999999999999 99999976 6788888754
No 112
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.88 E-value=5.7e-10 Score=68.20 Aligned_cols=47 Identities=17% Similarity=0.203 Sum_probs=41.5
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCC
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSS 51 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~ 51 (83)
|+.+|.++|||||.|.+.++|++||+. ||..+.| +.|.|+++.+...
T Consensus 51 ~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g--~~l~V~~a~~~~~ 97 (105)
T 2dh8_A 51 DKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDG--RNIDPKPCTPRGM 97 (105)
T ss_dssp CSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETT--EEEBCCCSCCSSC
T ss_pred CCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECC--EEEEEEEccCCCC
Confidence 677899999999999999999999998 9999977 6799999876544
No 113
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=98.88 E-value=1.7e-09 Score=68.59 Aligned_cols=42 Identities=24% Similarity=0.236 Sum_probs=37.5
Q ss_pred CCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCC
Q psy6355 6 DFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSP 49 (83)
Q Consensus 6 G~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~ 49 (83)
+.++|||||.|.+.++|++||+.|||..+.| ++|.|+++..+
T Consensus 64 ~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~G--r~i~V~~a~~~ 105 (111)
T 2jvr_A 64 RDFDGTGALEFPSEEILVEALERLNNIEFRG--SVITVERDDNP 105 (111)
T ss_dssp CSSSCCEEEEESSHHHHHHHHHHTTTEEETT--EEEEEEESCC-
T ss_pred CCCCCEEEEEECCHHHHHHHHHHcCCCEECC--eEEEEEECCCC
Confidence 5689999999999999999999999999977 67999998654
No 114
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.87 E-value=1.2e-09 Score=68.30 Aligned_cols=45 Identities=9% Similarity=0.078 Sum_probs=39.8
Q ss_pred CCCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCC
Q psy6355 1 MKGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSP 49 (83)
Q Consensus 1 ~Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~ 49 (83)
+|+ +|.++|||||.|.+.++|++||+. ||..+.| ++|.|.++...
T Consensus 50 ~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~g--r~i~v~~a~~~ 94 (114)
T 2cpy_A 50 VDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNG--REAFVHVVTLE 94 (114)
T ss_dssp CCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETT--EEEEEEEECHH
T ss_pred ECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCC--eEEEEEECCHH
Confidence 367 899999999999999999999987 9988977 78999998654
No 115
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=98.87 E-value=1.9e-09 Score=70.07 Aligned_cols=44 Identities=16% Similarity=0.385 Sum_probs=40.1
Q ss_pred CCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCC
Q psy6355 4 FTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSP 49 (83)
Q Consensus 4 ~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~ 49 (83)
.+|.++|||||.|.+.++|.+|++.|||..+.| ++|.|+||.+.
T Consensus 131 ~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g--~~i~v~~a~~k 174 (175)
T 1fje_B 131 QDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDG--RSVSLYYTGEK 174 (175)
T ss_dssp SSSSCCSEEEEECSSHHHHHHHHHHHTEEEETT--EEEEEEECSSC
T ss_pred CCCCCceEEEEEECCHHHHHHHHHHhCCCEECC--eEEEEEecCCC
Confidence 578999999999999999999999999999977 67999999753
No 116
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=98.86 E-value=3.2e-09 Score=71.62 Aligned_cols=45 Identities=18% Similarity=0.349 Sum_probs=41.0
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCC
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSP 49 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~ 49 (83)
|+ +|.++|||||.|.+.++|++||+.|||..+.| ++|.|.+|...
T Consensus 123 d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~G--r~l~V~~a~~~ 167 (177)
T 2f3j_A 123 DR-SGRSLGTADVHFERRADALKAMKQYKGVPLDG--RPMDIQLVASQ 167 (177)
T ss_dssp CT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSS--SBCEEEEESSG
T ss_pred CC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECC--EEEEEEEecCC
Confidence 56 89999999999999999999999999999977 67999998754
No 117
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=98.86 E-value=1.4e-09 Score=64.25 Aligned_cols=42 Identities=26% Similarity=0.301 Sum_probs=36.8
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEec
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFA 46 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA 46 (83)
|+.+|.++|||||.|.+.++|++|++. +++.+.| +.|.|++|
T Consensus 46 ~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~~g--~~i~v~~A 87 (87)
T 3s7r_A 46 DPNTGRSRGFGFILFKDAASVEKVLDQ-KEHRLDG--RVIDPKKA 87 (87)
T ss_dssp CTTTCCEEEEEEEEESSTHHHHHHHHS-SCEEETT--EEEEEEEC
T ss_pred cCCCCccccEEEEEECCHHHHHHHHHh-CCCEECC--EEEEEEeC
Confidence 678899999999999999999999964 7878877 67888875
No 118
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.86 E-value=2.9e-09 Score=64.41 Aligned_cols=44 Identities=25% Similarity=0.351 Sum_probs=39.2
Q ss_pred CccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCCC
Q psy6355 7 FCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSS 52 (83)
Q Consensus 7 ~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~~ 52 (83)
.++|||||.|.+.++|++||+.|||..+.| ++|.|.++.+....
T Consensus 47 ~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g--~~l~v~~a~~~~~~ 90 (97)
T 1x5p_A 47 PPRNCAFVTYEKMESADQAVAELNGTQVES--VQLKVNIARKQPML 90 (97)
T ss_dssp TTTTEEEEEESSHHHHHHHHHHTTTEEETT--EEEEEECCSSCCCC
T ss_pred CCCCEEEEEECCHHHHHHHHHHhCCCeECC--eEEEEEECCCCCCC
Confidence 689999999999999999999999999976 78999999876544
No 119
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=98.86 E-value=3.1e-09 Score=67.81 Aligned_cols=48 Identities=29% Similarity=0.407 Sum_probs=42.7
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCC
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSS 51 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~ 51 (83)
|+.+|.++|||||.|.+.++|++|++.|||..+.| ++|.|.++.+...
T Consensus 37 ~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g--~~l~v~~~~~~~~ 84 (167)
T 1fxl_A 37 DKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT--KTIKVSYARPSSA 84 (167)
T ss_dssp CTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT--EECEEEECCCCCG
T ss_pred CCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCC--ceEEEEecCCCcc
Confidence 56789999999999999999999999999999966 7799999876543
No 120
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.86 E-value=4.1e-09 Score=64.80 Aligned_cols=43 Identities=16% Similarity=0.165 Sum_probs=38.1
Q ss_pred CCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCC
Q psy6355 4 FTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSP 49 (83)
Q Consensus 4 ~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~ 49 (83)
.+|.++|||||.|.+.++|++||+. ||..+.| +.|.|..+...
T Consensus 52 ~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~g--r~i~v~~~~~~ 94 (104)
T 1wg5_A 52 FQGRSTGEAFVQFASQEIAEKALKK-HKERIGH--RYIEIFKSSRA 94 (104)
T ss_dssp SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSS--SCCEEEEECTT
T ss_pred CCCCcceEEEEEECCHHHHHHHHHh-CcchhCC--cEEEEEECCHH
Confidence 5899999999999999999999997 9999977 57999887643
No 121
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.85 E-value=2.6e-09 Score=67.43 Aligned_cols=43 Identities=14% Similarity=0.060 Sum_probs=37.4
Q ss_pred CCCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecC
Q psy6355 1 MKGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFAN 47 (83)
Q Consensus 1 ~Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~ 47 (83)
+|+. |+++|||||.|.+.++|++|| .|||+.+.| +.|.|..+.
T Consensus 49 ~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~g--r~i~V~~a~ 91 (109)
T 2dnn_A 49 KDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQ--RYVEVSPAT 91 (109)
T ss_dssp CCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETT--EEEEEEECC
T ss_pred ECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECC--eEEEEEECC
Confidence 3664 999999999999999999999 699999977 678997764
No 122
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.85 E-value=2.5e-09 Score=64.00 Aligned_cols=44 Identities=23% Similarity=0.300 Sum_probs=38.7
Q ss_pred CccceEEEEeCCHHHHHHHHHHhCC-CCCCCCCcceEEEecCCCCCC
Q psy6355 7 FCRYLGFIRFDQRIEAERAIQELNG-TIPKGSNEPITVKFANSPSSS 52 (83)
Q Consensus 7 ~SrG~gFV~F~~~e~A~~AI~~LnG-~~~~G~~~~l~V~fA~~~~~~ 52 (83)
.++|||||.|.+.++|++|++.||| ..+.| ++|.|.++.+...+
T Consensus 42 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g--~~l~v~~a~~~~~~ 86 (93)
T 2cqh_A 42 LKSGYAFVDYPDQNWAIRAIETLSGKVELHG--KIMEVDYSVSKKLR 86 (93)
T ss_dssp EETTEEEECCSCHHHHHHHHHHHTTTCEETT--EECEEEECCCCCCC
T ss_pred cCCCEEEEEECCHHHHHHHHHHccCCeeECC--EEEEEEEccCcccc
Confidence 3689999999999999999999999 78877 78999999876554
No 123
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.84 E-value=2e-09 Score=69.03 Aligned_cols=42 Identities=24% Similarity=0.271 Sum_probs=38.2
Q ss_pred CCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCC
Q psy6355 5 TDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANS 48 (83)
Q Consensus 5 TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~ 48 (83)
++.++|++||.|.+.++|.+||+.|||..+.| ++|.|.|++.
T Consensus 67 ~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G--R~i~v~~~~~ 108 (118)
T 3ue2_A 67 DAEIIVKIFVEFSIASETHKAIQALNGRWFAG--RKVVAEVYDQ 108 (118)
T ss_dssp TCEEEEEEEEEESSHHHHHHHHHHHTTCEETT--EECEEEEECH
T ss_pred CCcceEEEEEEECCHHHHHHHHHHHCCCEECC--cEEEEEEcCh
Confidence 57889999999999999999999999999977 7899998753
No 124
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.84 E-value=2.5e-09 Score=66.39 Aligned_cols=42 Identities=31% Similarity=0.540 Sum_probs=37.9
Q ss_pred CCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCC
Q psy6355 6 DFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSP 49 (83)
Q Consensus 6 G~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~ 49 (83)
+.++|||||.|.+.++|++|++.|||..+.| ++|.|+++.+.
T Consensus 66 ~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g--~~l~V~~a~~~ 107 (109)
T 2err_A 66 RGSKGFGFVTFENSADADRAREKLHGTVVEG--RKIEVNNATAR 107 (109)
T ss_dssp TBCTTEEEEECCCSHHHHHHHHHHTTCEETT--EECEEEECCCS
T ss_pred CCCceEEEEEECCHHHHHHHHHHcCCCEECC--EEEEEEECCCC
Confidence 4589999999999999999999999999977 77999998653
No 125
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=98.83 E-value=3.4e-09 Score=67.94 Aligned_cols=49 Identities=24% Similarity=0.426 Sum_probs=43.0
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCCC
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSS 52 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~~ 52 (83)
|+.+|.++|||||.|.+.++|++|++.|||..+.| ++|.|.++.+....
T Consensus 38 ~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g--~~l~v~~~~~~~~~ 86 (168)
T 1b7f_A 38 DYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRN--KRLKVSYARPGGES 86 (168)
T ss_dssp ETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETT--EECEEEECCCCSST
T ss_pred eCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCC--cEEEEEecCCCccc
Confidence 56789999999999999999999999999999966 67999998865443
No 126
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.83 E-value=4.8e-09 Score=65.39 Aligned_cols=41 Identities=24% Similarity=0.250 Sum_probs=37.5
Q ss_pred CccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCC
Q psy6355 7 FCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSP 49 (83)
Q Consensus 7 ~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~ 49 (83)
.++|||||.|.+.++|++||+.|||..+.| ++|.|.++.+.
T Consensus 62 ~~~G~afV~f~~~~~A~~Ai~~lng~~~~g--r~l~v~~a~~~ 102 (112)
T 2dit_A 62 HPDGVASVSFRDPEEADYCIQTLDGRWFGG--RQITAQAWDGT 102 (112)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHSTTCEETT--EECEEEECCSC
T ss_pred CCCEEEEEEECCHHHHHHHHHHcCCCEECC--cEEEEEEeCCC
Confidence 489999999999999999999999999976 78999998764
No 127
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.82 E-value=4.4e-09 Score=63.99 Aligned_cols=47 Identities=21% Similarity=0.280 Sum_probs=39.9
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCCC
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSS 52 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~~ 52 (83)
|+.+|.++|||||.|.+.++|++||+ +++.+.| +.|.|.++......
T Consensus 50 ~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g--~~l~v~~a~~~~~~ 96 (103)
T 2cqg_A 50 DLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDG--RWCDCKLPNSKQSQ 96 (103)
T ss_dssp CSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETT--EEEEEECCCTTCCC
T ss_pred cCCCCCccceEEEEECCHHHHHHHHH--cCCeeCC--eEEEEEecCCCCcC
Confidence 67789999999999999999999998 4667866 67999999875443
No 128
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.82 E-value=5.9e-09 Score=63.14 Aligned_cols=43 Identities=35% Similarity=0.464 Sum_probs=38.0
Q ss_pred CccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCC
Q psy6355 7 FCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSS 51 (83)
Q Consensus 7 ~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~ 51 (83)
.+||||||.|.+.++|++|++.|||..+.| ++|.|.++.+...
T Consensus 49 ~~kg~afV~f~~~~~a~~a~~~l~g~~~~g--~~l~v~~a~~~~~ 91 (99)
T 2cpj_A 49 KDKGFGFIRLETRTLAEIAKVELDNMPLRG--KQLRVRFACHSAS 91 (99)
T ss_dssp TTTTEEEEECSSSHHHHHHHHHHTTCCBTT--BCCEEEESSCCSC
T ss_pred cCCCEEEEEECCHHHHHHHHHHhCCCEeCC--ceEEEEEcCCCCC
Confidence 358999999999999999999999999977 7799999976543
No 129
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.82 E-value=8.2e-09 Score=62.29 Aligned_cols=43 Identities=23% Similarity=0.380 Sum_probs=37.3
Q ss_pred cceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCC
Q psy6355 9 RYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSS 51 (83)
Q Consensus 9 rG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~ 51 (83)
+|||||.|.+.++|++|++.|||..+.+..++|.|.++.+...
T Consensus 53 ~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~~~~ 95 (97)
T 1why_A 53 DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKSGPS 95 (97)
T ss_dssp SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCCCCC
T ss_pred CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCCCCC
Confidence 8999999999999999999999999972237899999987543
No 130
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=98.82 E-value=1.7e-09 Score=70.78 Aligned_cols=42 Identities=10% Similarity=-0.043 Sum_probs=38.0
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecC
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFAN 47 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~ 47 (83)
|+. |++||||||.|.+.++|++||+ |||..+.| ++|.|..+.
T Consensus 82 d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~g--r~i~V~~a~ 123 (136)
T 2hgl_A 82 TRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGH--RYIEVFKSH 123 (136)
T ss_dssp CSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSS--SEEEEEECC
T ss_pred CCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECC--EEEEEEECC
Confidence 665 9999999999999999999999 99999977 679998874
No 131
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.82 E-value=1.5e-09 Score=68.45 Aligned_cols=43 Identities=9% Similarity=-0.028 Sum_probs=38.0
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCC
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANS 48 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~ 48 (83)
|+. |.+||||||.|.+.++|++||+ |||+.+.| +.|.|.++..
T Consensus 55 ~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~g--r~i~V~~a~~ 97 (118)
T 2db1_A 55 TRE-GRQSGEAFVELESEDDVKLALK-KDRESMGH--RYIEVFKSHR 97 (118)
T ss_dssp CSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETT--EEEEEEEECH
T ss_pred CCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECC--eEEEEEECCH
Confidence 555 9999999999999999999999 99999976 6799998753
No 132
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=98.82 E-value=7e-09 Score=64.20 Aligned_cols=45 Identities=18% Similarity=0.287 Sum_probs=39.7
Q ss_pred CCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCC
Q psy6355 5 TDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSS 51 (83)
Q Consensus 5 TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~ 51 (83)
++.++|||||.|.+.++|++|++.|||..+.| +.|.|.++.+...
T Consensus 43 ~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g--~~l~v~~a~~~~~ 87 (115)
T 3lqv_A 43 TPETRGTAYVVYEDIFDAKNAVDHLSGFNVSN--RYLVVLYYNANRA 87 (115)
T ss_dssp STTTTTCEEEEESSHHHHHHHHHHHTTCBSSS--CBCEEEECCHHHH
T ss_pred CCCCCcEEEEEECCHHHHHHHHHHcCCCEECC--eEEEEEEecCChh
Confidence 46789999999999999999999999999977 6799999986443
No 133
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=98.81 E-value=3.1e-09 Score=63.39 Aligned_cols=41 Identities=17% Similarity=0.217 Sum_probs=37.2
Q ss_pred CccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCC
Q psy6355 7 FCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSP 49 (83)
Q Consensus 7 ~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~ 49 (83)
.+||||||.|.+.++|++|++.|||..+.| ++|.|.++...
T Consensus 38 ~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g--~~l~V~~a~~~ 78 (88)
T 1wg1_A 38 RNKRTAFVTLLNGEQAQNAIQMFHQYSFRG--KDLIVQLQPTD 78 (88)
T ss_dssp GGGTEEEECCSCHHHHHHHHHHHTTEEETT--EEEEEEECCCC
T ss_pred CCCcEEEEEECCHHHHHHHHHHhCCCeECC--cEEEEEEcCCC
Confidence 679999999999999999999999999977 67999998654
No 134
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=98.81 E-value=8e-09 Score=65.75 Aligned_cols=44 Identities=25% Similarity=0.351 Sum_probs=38.6
Q ss_pred CccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCCC
Q psy6355 7 FCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSS 52 (83)
Q Consensus 7 ~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~~ 52 (83)
.+||||||.|.+.++|++||+.|||..+.| ++|.|.++.+....
T Consensus 71 ~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g--~~l~V~~a~~~~~~ 114 (121)
T 2bz2_A 71 PPRNCAFVTYEKMESADQAVAELNGTQVES--VQLKVNIARKQPML 114 (121)
T ss_dssp TTTTEEEEECSSHHHHHHHHHHHTTCBCSS--CBCEEEECCSSCC-
T ss_pred CCCCEEEEEECCHHHHHHHHHHhCCCEECC--eEEEEEEeCCCCCC
Confidence 679999999999999999999999999976 67999999866443
No 135
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=98.80 E-value=1.1e-08 Score=66.21 Aligned_cols=41 Identities=24% Similarity=0.421 Sum_probs=37.4
Q ss_pred ccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCC
Q psy6355 8 CRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPS 50 (83)
Q Consensus 8 SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~ 50 (83)
++|||||.|.+.++|++||+.|||..+.| ++|.|+++.++.
T Consensus 109 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~v~~a~~~~ 149 (150)
T 2i2y_A 109 PPGFAFVEFEDPRDAADAVRELDGRTLCG--CRVRVELSNGEK 149 (150)
T ss_dssp SCSEEEEEESSHHHHHHHHHHHSSSCSSS--SCCEEEECCCCC
T ss_pred CCcEEEEEECCHHHHHHHHHHcCCCEECC--eEEEEEEcCCCC
Confidence 79999999999999999999999999976 789999997653
No 136
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.79 E-value=1.2e-08 Score=60.86 Aligned_cols=42 Identities=26% Similarity=0.430 Sum_probs=37.4
Q ss_pred cceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCCC
Q psy6355 9 RYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSS 52 (83)
Q Consensus 9 rG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~~ 52 (83)
||||||.|.+.++|++|++.|||..+.| ++|.|+++.+....
T Consensus 42 ~g~afV~f~~~~~A~~A~~~l~g~~~~g--~~l~v~~a~~~~~~ 83 (90)
T 2dnq_A 42 KNYGFVHIEDKTAAEDAIRNLHHYKLHG--VNINVEASKNKSKA 83 (90)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTCBCSS--CBCEEECSSCCCCC
T ss_pred CCEEEEEECCHHHHHHHHHHhcCCccCC--cEEEEEECCCCCCC
Confidence 7999999999999999999999999977 67999999866443
No 137
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.77 E-value=8.3e-09 Score=62.46 Aligned_cols=43 Identities=33% Similarity=0.550 Sum_probs=38.2
Q ss_pred CccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCC
Q psy6355 7 FCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSS 51 (83)
Q Consensus 7 ~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~ 51 (83)
.+||||||.|.+.++|++||+.|||..+.| ++|.|.++.+...
T Consensus 49 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~g--~~l~v~~a~~~~~ 91 (99)
T 2cpd_A 49 KIRDYAFVHFSNREDAVEAMKALNGKVLDG--SPIEVTLAKPVDK 91 (99)
T ss_dssp ECSSEEEEEESSHHHHHHHHHHHSSEEETT--EEEEEECCCCCCC
T ss_pred EeCCeEEEEeCCHHHHHHHHHHhCCCEeCC--cEEEEEECCCCCC
Confidence 468999999999999999999999999976 6899999986544
No 138
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.76 E-value=1.5e-08 Score=63.86 Aligned_cols=41 Identities=24% Similarity=0.276 Sum_probs=37.4
Q ss_pred ceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCCC
Q psy6355 10 YLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSS 52 (83)
Q Consensus 10 G~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~~ 52 (83)
|+|||.|.+.++|++|++.|||..+.| ++|+|.||...+..
T Consensus 47 G~AfV~F~~~esA~~A~~~l~G~~l~g--r~i~v~~A~~~sd~ 87 (96)
T 2diu_A 47 CSAILRFINQDSAERAQKRMENEDVFG--NRIIVSFTPKNREL 87 (96)
T ss_dssp TCEEEEESSHHHHHHHHHHHTTCCSSS--SCCEEESSCCSCCC
T ss_pred CEEEEEECCHHHHHHHHHHhcCCccCC--ceEEEEecCCCcce
Confidence 999999999999999999999999977 78999999876554
No 139
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=98.76 E-value=9.6e-09 Score=62.71 Aligned_cols=44 Identities=36% Similarity=0.604 Sum_probs=39.0
Q ss_pred ccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCCCc
Q psy6355 8 CRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSSN 53 (83)
Q Consensus 8 SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~~~ 53 (83)
.+|||||.|.+.++|++||+.|||..+.| ++|.|.++.+...+.
T Consensus 44 ~~~~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~v~~a~~~~~~~ 87 (103)
T 2dgu_A 44 LKDYAFIHFDERDGAVKAMEEMNGKDLEG--ENIEIVFAKPPDQKR 87 (103)
T ss_dssp CSSCEEEEESSHHHHHHHHHHHTTEEETT--EEEEEEECCCCCCCC
T ss_pred ECCEEEEEeCCHHHHHHHHHHHCCCccCC--CEEEEEEcCCCcccc
Confidence 47899999999999999999999999976 689999998776553
No 140
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=98.76 E-value=1.8e-08 Score=67.05 Aligned_cols=47 Identities=17% Similarity=0.258 Sum_probs=39.3
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCC
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPS 50 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~ 50 (83)
|+.+|.++|||||.|.+.++|++|++.|||..+.| ++|.|.++....
T Consensus 63 ~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g--~~l~v~~~~~~~ 109 (216)
T 2qfj_A 63 DSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGG--RNIKVGRPSNIG 109 (216)
T ss_dssp C-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC---CCCEEECCSCCG
T ss_pred cCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCC--eeEEEecCCCcc
Confidence 67789999999999999999999999999999976 679998876543
No 141
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=98.75 E-value=1e-08 Score=61.95 Aligned_cols=42 Identities=21% Similarity=0.347 Sum_probs=36.9
Q ss_pred ccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCC
Q psy6355 8 CRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSS 51 (83)
Q Consensus 8 SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~ 51 (83)
++|||||.|.+.++|++||+.|||..+.| ++|.|.++.....
T Consensus 44 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g--~~l~V~~a~~~~~ 85 (96)
T 2kvi_A 44 KNAFGFIQFDNPQSVRDAIECESQEMNFG--KKLILEVSSSNAR 85 (96)
T ss_dssp ETTEEEEEESCHHHHHHHHHHHTCSSCBT--TTBCEEEEECCCC
T ss_pred eCCEEEEEECCHHHHHHHHHHcCCCeeCC--cEEEEEEcCcCCC
Confidence 58999999999999999999999999977 6799999876543
No 142
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.75 E-value=1.1e-08 Score=63.76 Aligned_cols=43 Identities=16% Similarity=0.150 Sum_probs=37.8
Q ss_pred CccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCC
Q psy6355 7 FCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSS 51 (83)
Q Consensus 7 ~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~ 51 (83)
.++|||||.|.+.++|++||+.|||..+.| ++|.|.||.....
T Consensus 44 ~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g--~~l~V~~a~~~~~ 86 (111)
T 1whx_A 44 EGGITAIVEFLEPLEARKAFRHLAYSKFHH--VPLYLEWAPIGVF 86 (111)
T ss_dssp SSSSCEEEEESCHHHHHHHHHHHTTCBSSS--SBCEEEEEETTTT
T ss_pred CCCCEEEEEeCCHHHHHHHHHHhCCCEECC--eEEEEEECCCCcc
Confidence 378999999999999999999999999976 6799999876433
No 143
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.75 E-value=1e-08 Score=65.91 Aligned_cols=45 Identities=24% Similarity=0.324 Sum_probs=37.4
Q ss_pred ccceEEEEeCCHHHHHHHHHHhCCCCC---CCCCcceEEEecCCCCCC
Q psy6355 8 CRYLGFIRFDQRIEAERAIQELNGTIP---KGSNEPITVKFANSPSSS 52 (83)
Q Consensus 8 SrG~gFV~F~~~e~A~~AI~~LnG~~~---~G~~~~l~V~fA~~~~~~ 52 (83)
+||||||.|.+.++|++||+.|||+.+ .+..++|.|.|+..-...
T Consensus 62 ~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~a~~~p~~ 109 (114)
T 2cq2_A 62 NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVEKVQWS 109 (114)
T ss_dssp TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEEESCCCCS
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEecccCccc
Confidence 489999999999999999999999965 334578999998754443
No 144
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=98.75 E-value=1.1e-08 Score=62.35 Aligned_cols=40 Identities=23% Similarity=0.385 Sum_probs=36.3
Q ss_pred ccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCC
Q psy6355 8 CRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSP 49 (83)
Q Consensus 8 SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~ 49 (83)
++|||||.|.+.++|++|++.|||..+.| +.|.|.++...
T Consensus 56 ~~g~afV~f~~~~~A~~Ai~~l~g~~~~g--~~l~V~~a~~~ 95 (97)
T 2xnq_A 56 KNAFGFIQFDNPQSVRDAIEXESQEMNFG--KKLILEVSSSN 95 (97)
T ss_dssp CSSEEEEEESSHHHHHHHHHHHTTSEETT--EECEEEECCCC
T ss_pred eCCEEEEEECCHHHHHHHHHHcCCCEECC--EEEEEEecCCC
Confidence 58999999999999999999999999976 67999998754
No 145
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=98.75 E-value=7.6e-09 Score=67.95 Aligned_cols=48 Identities=17% Similarity=0.160 Sum_probs=39.1
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCCC
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSS 52 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~~ 52 (83)
|+.+|.++|||||.|.+.++|++|++. +|..+.| ++|.|++|.+..+.
T Consensus 139 ~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G--~~i~v~~a~~k~~~ 186 (196)
T 1l3k_A 139 DRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNG--HNCEVRKALSKQEM 186 (196)
T ss_dssp CTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETT--EECEEEECC-----
T ss_pred cCCCCCccceEEEEECCHHHHHHHHHh-CCcEECC--EEEEEEecCChhHh
Confidence 667899999999999999999999986 8888877 67999999876554
No 146
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=98.74 E-value=4.6e-09 Score=63.69 Aligned_cols=40 Identities=18% Similarity=0.207 Sum_probs=36.1
Q ss_pred CccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCC
Q psy6355 7 FCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANS 48 (83)
Q Consensus 7 ~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~ 48 (83)
.++|||||.|.+.++|++||+.|||..+.| +.|.|+++.+
T Consensus 61 ~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g--~~l~V~~a~~ 100 (101)
T 2la4_A 61 PEKGCCFIKYDTHEQAAVCIVALANFPFQG--RNLRTGWGKE 100 (101)
T ss_dssp TTTTEEEEECSSHHHHHHHHHHHTTCEETT--EECCCCBCCC
T ss_pred cCCCEEEEEECCHHHHHHHHHHhCCCeECC--eEEEEEeccC
Confidence 579999999999999999999999999977 6799998864
No 147
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.74 E-value=1.3e-08 Score=62.64 Aligned_cols=42 Identities=24% Similarity=0.411 Sum_probs=37.7
Q ss_pred cceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCCC
Q psy6355 9 RYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSS 52 (83)
Q Consensus 9 rG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~~ 52 (83)
+|||||.|.+.++|++||+.|||..+.| ++|.|.++......
T Consensus 61 ~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~v~~a~~~~~~ 102 (109)
T 1x4g_A 61 KGYSFVRFSTHESAAHAIVSVNGTTIEG--HVVKCYWGKESPDM 102 (109)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTCEETT--EECEEECCCCCCSS
T ss_pred CCEEEEEECCHHHHHHHHHHcCCCEECC--cEEEEEecCCCCCC
Confidence 8999999999999999999999999977 67999999876443
No 148
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=98.74 E-value=2e-08 Score=68.25 Aligned_cols=45 Identities=13% Similarity=0.253 Sum_probs=39.1
Q ss_pred CccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCC
Q psy6355 7 FCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSS 51 (83)
Q Consensus 7 ~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~ 51 (83)
.++|||||.|.+.++|++|++.|||..+.|..++|.|.|+.+...
T Consensus 82 ~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~~l 126 (164)
T 1sjr_A 82 NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSL 126 (164)
T ss_dssp SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSSSC
T ss_pred CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCCcc
Confidence 478999999999999999999999999865446899999987643
No 149
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=98.73 E-value=9.9e-09 Score=63.88 Aligned_cols=41 Identities=24% Similarity=0.536 Sum_probs=36.8
Q ss_pred cceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCC
Q psy6355 9 RYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSS 51 (83)
Q Consensus 9 rG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~ 51 (83)
+|||||.|.+.++|++|++.|||..+.| ++|.|.++.....
T Consensus 65 kg~afV~f~~~~~A~~Ai~~l~g~~~~g--~~l~V~~a~~~~~ 105 (108)
T 2jvo_A 65 NGFAFVEFEEAESAAKAIEEVHGKSFAN--QPLEVVYSKLPAK 105 (108)
T ss_dssp TTEEEEECSSHHHHHHHHHHHTTCEETT--EECEEESCSCCC-
T ss_pred CCEEEEEECCHHHHHHHHHHcCCCEECC--eEEEEEEecCCCC
Confidence 7999999999999999999999999976 7799999987644
No 150
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=98.73 E-value=7.4e-09 Score=63.87 Aligned_cols=43 Identities=19% Similarity=0.432 Sum_probs=38.1
Q ss_pred ccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCCC
Q psy6355 8 CRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSS 52 (83)
Q Consensus 8 SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~~ 52 (83)
++|||||.|.+.++|++||+.|||..+.| ++|.|.++..+...
T Consensus 61 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g--~~l~V~~a~~~~~~ 103 (110)
T 1wf1_A 61 HKGYAFVQYSNERHARAAVLGENGRVLAG--QTLDINMAGEPKPD 103 (110)
T ss_dssp ETTEEEEECSSSHHHHHHHHHHTTCEETT--EECCEEESCCCCSC
T ss_pred eCCEEEEEECCHHHHHHHHHHcCCCEECC--eEEEEEECCCCCCC
Confidence 68999999999999999999999999977 67999999865443
No 151
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=98.73 E-value=5.5e-09 Score=68.65 Aligned_cols=46 Identities=11% Similarity=-0.021 Sum_probs=39.4
Q ss_pred CCCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCC
Q psy6355 1 MKGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPS 50 (83)
Q Consensus 1 ~Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~ 50 (83)
+|+. |.+||||||.|.+.++|++|| .||+..+.| +.|.|..+....
T Consensus 79 ~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~g--R~i~V~~a~~~~ 124 (139)
T 2hgn_A 79 IGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQH--RYIELFLNSTTG 124 (139)
T ss_dssp CSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSS--CCCCCEECCCSC
T ss_pred ECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECC--EEEEEEECCCCC
Confidence 3665 999999999999999999999 889999977 578888876553
No 152
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=98.72 E-value=1.2e-08 Score=77.26 Aligned_cols=48 Identities=15% Similarity=0.230 Sum_probs=43.0
Q ss_pred CCCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCC
Q psy6355 1 MKGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPS 50 (83)
Q Consensus 1 ~Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~ 50 (83)
.|+.||.++|||||.|.+.++|.+||+.|||..|.| .+|.|.++....
T Consensus 136 ~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~g--r~i~V~~a~~~~ 183 (437)
T 3pgw_S 136 YSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDG--RRVLVDVERGRT 183 (437)
T ss_pred ccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECC--EEEEEEEeCCCC
Confidence 367899999999999999999999999999999977 679999997543
No 153
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=98.72 E-value=8.5e-09 Score=70.01 Aligned_cols=45 Identities=27% Similarity=0.411 Sum_probs=39.6
Q ss_pred CCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCC
Q psy6355 5 TDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSS 51 (83)
Q Consensus 5 TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~ 51 (83)
.+.+||||||.|.+.++|++||+.|||..+.| ++|.|++|.+..+
T Consensus 139 ~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g--~~i~V~~a~~~~~ 183 (213)
T 4f02_A 139 ENGSKGYGFVHFETQEAAERAIEKMNGMLLND--RKVFVGRFKSRKE 183 (213)
T ss_dssp TTEEEEEEEEEESSHHHHHHHHHHHTTCEETT--EECEEEECCCHHH
T ss_pred CCCCceEEEEEeCCHHHHHHHHHHhCCCEECC--EEEEEEEcCCCcc
Confidence 35689999999999999999999999999977 7899999976533
No 154
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=98.72 E-value=3.3e-09 Score=70.60 Aligned_cols=47 Identities=15% Similarity=0.116 Sum_probs=38.6
Q ss_pred CCCCCCCccceEEEEeCC----HHH----HHHHHH--HhCCCCCCCCCcceEEEecCCC
Q psy6355 1 MKGFTDFCRYLGFIRFDQ----RIE----AERAIQ--ELNGTIPKGSNEPITVKFANSP 49 (83)
Q Consensus 1 ~Dk~TG~SrG~gFV~F~~----~e~----A~~AI~--~LnG~~~~G~~~~l~V~fA~~~ 49 (83)
+|+.||.|+|||||+|.+ .++ |.+||. .|||..++| ++|.|.+.+..
T Consensus 40 ~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~I~G--r~irV~ln~~g 96 (136)
T 2j8a_A 40 NDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCFIMG--FKFEVILNKHS 96 (136)
T ss_dssp ECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEEETT--EEEEEEECCTT
T ss_pred ecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCeecC--cEEEEEECccc
Confidence 599999999999999996 333 899999 889999988 67999986543
No 155
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.72 E-value=9.4e-09 Score=65.58 Aligned_cols=39 Identities=18% Similarity=0.197 Sum_probs=36.0
Q ss_pred ccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCC
Q psy6355 8 CRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANS 48 (83)
Q Consensus 8 SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~ 48 (83)
++|++||.|.+.++|++||+.|||..+.| ++|.|.|+..
T Consensus 54 ~~G~~fV~f~~~e~A~~Ai~~lnG~~f~G--R~i~v~~~~~ 92 (114)
T 3s6e_A 54 AQGNVYVKCPSIAAAIAAVNALHGRWFAG--KMITAAYVPL 92 (114)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHTTCEETT--EECEEEEECH
T ss_pred CcEEEEEEECCHHHHHHHHHHhCCCEECC--EEEEEEEEcH
Confidence 69999999999999999999999999977 7899999863
No 156
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.71 E-value=2.1e-08 Score=68.47 Aligned_cols=45 Identities=22% Similarity=0.228 Sum_probs=40.5
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCC
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANS 48 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~ 48 (83)
|+.+|.++|++||.|.+.++|.+||+.|||..+.| ++|.|.|.+.
T Consensus 168 ~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~g--r~i~~~~~~~ 212 (222)
T 3dxb_A 168 EEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG--RKVVAEVYDQ 212 (222)
T ss_dssp SSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSS--SBCEEEECCH
T ss_pred cccCcCceeEEEEEECCHHHHHHHHHHhcCceECC--eEEEEEEcCH
Confidence 45678999999999999999999999999999988 6799999763
No 157
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.70 E-value=2.2e-08 Score=59.64 Aligned_cols=42 Identities=26% Similarity=0.491 Sum_probs=37.1
Q ss_pred ccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCC
Q psy6355 8 CRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSS 51 (83)
Q Consensus 8 SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~ 51 (83)
.+|||||.|.+.++|++||+.|||..+.| ++|.|.++.+...
T Consensus 42 ~~~~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~v~~a~~~~~ 83 (90)
T 2dnp_A 42 VKDYAFVHMEKEADAKAAIAQLNGKEVKG--KRINVELSTKGQK 83 (90)
T ss_dssp CSSCEEEEESCHHHHHHHHHHHTTCEETT--EECEEEESCCCCC
T ss_pred ECCEEEEEECCHHHHHHHHHHhCCCEECC--cEEEEEECCCCCC
Confidence 36799999999999999999999999976 6799999987644
No 158
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=98.70 E-value=6.2e-09 Score=67.57 Aligned_cols=47 Identities=26% Similarity=0.367 Sum_probs=40.7
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCC
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSS 51 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~ 51 (83)
|+.+|.++|||||.|.+.++|++|+ .|||..+.| ++|.|.++.....
T Consensus 47 ~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g--~~l~v~~~~~~~~ 93 (175)
T 1fje_B 47 DVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFG--NEIKLEKPKGRDS 93 (175)
T ss_dssp EEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETT--EEEEEECCCCSSC
T ss_pred ECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCC--eEEEEecCCCccc
Confidence 4567899999999999999999999 599999976 7899999876544
No 159
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=98.69 E-value=1.3e-08 Score=70.94 Aligned_cols=46 Identities=17% Similarity=0.251 Sum_probs=42.0
Q ss_pred CCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCCC
Q psy6355 5 TDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSS 52 (83)
Q Consensus 5 TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~~ 52 (83)
+|.++|||||.|.+.++|.+|++.|||..+.| ++|.|+|+.+...+
T Consensus 222 ~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g--~~l~v~~a~~~~~~ 267 (284)
T 3smz_A 222 DGQLKGFAVLEYETAEMAEEAQQQADGLSLGG--SHLRVSFCAPGPPG 267 (284)
T ss_dssp SCCEEEEEEEECSSHHHHHHHHHHHTTCEETT--EECEEEECCSSSCH
T ss_pred CCCcccEEEEEeCCHHHHHHHHHHhCCCccCC--eEEEEEEecCCCcc
Confidence 78999999999999999999999999999977 68999999876554
No 160
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.67 E-value=3.9e-08 Score=61.40 Aligned_cols=43 Identities=16% Similarity=0.193 Sum_probs=35.8
Q ss_pred CCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCCC
Q psy6355 6 DFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSS 52 (83)
Q Consensus 6 G~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~~ 52 (83)
+.+||||||.|.+.++|++||+.+++ +.| ++|.|+++..+..+
T Consensus 51 ~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g--~~l~V~~a~~~~~~ 93 (100)
T 2d9o_A 51 SKKPGTAVVEFATVKAAELAVQNEVG--LVD--NPLKISWLEGQPQD 93 (100)
T ss_dssp SSSSSEEEEEESCHHHHHHHHHTCCB--CSS--SBCEEECSSCCCCC
T ss_pred cCCCCEEEEEECCHHHHHHHHHhcCC--CCC--CeEEEEEccCCCCC
Confidence 47899999999999999999998665 334 68999999876544
No 161
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.67 E-value=2.8e-08 Score=59.37 Aligned_cols=43 Identities=21% Similarity=0.362 Sum_probs=37.6
Q ss_pred ccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCCC
Q psy6355 8 CRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSS 52 (83)
Q Consensus 8 SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~~ 52 (83)
.++||||.|.+.++|++|++.|||..+.| +.|.|+++.+....
T Consensus 43 ~~~~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~V~~a~~~~~~ 85 (92)
T 2dgt_A 43 VKDYAFVHMERAEDAVEAIRGLDNTEFQG--KRMHVQLSTSRLRT 85 (92)
T ss_dssp CSSEEEEEESCHHHHHHHHHHHTTEEETT--EEEEEEESSCCCSC
T ss_pred ECCEEEEEECCHHHHHHHHHHhCCCeeCC--cEEEEEEccCCCCC
Confidence 36799999999999999999999999976 78999999765443
No 162
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=98.67 E-value=2.5e-08 Score=67.65 Aligned_cols=46 Identities=24% Similarity=0.420 Sum_probs=41.5
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCC
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSP 49 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~ 49 (83)
|+.||.++|||||.|.+.++|++||+.|||..+.| ++|.|.++...
T Consensus 50 d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g--~~i~~~~~~~~ 95 (213)
T 4f02_A 50 DMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG--KPVRIMWSQRD 95 (213)
T ss_dssp CTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT--EECEEEECCCC
T ss_pred ccCCCCccccccceeCCHHHHHHHHHHhhhhhcCC--ccccccccccc
Confidence 78899999999999999999999999999999866 67888887654
No 163
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=98.66 E-value=3.1e-08 Score=69.01 Aligned_cols=44 Identities=20% Similarity=0.321 Sum_probs=40.0
Q ss_pred CCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCC
Q psy6355 5 TDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPS 50 (83)
Q Consensus 5 TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~ 50 (83)
+|.+||||||.|.+.++|++||+.|||..+.| ++|.|.++....
T Consensus 48 ~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~v~~a~~~~ 91 (282)
T 3pgw_A 48 SLKMRGQAFVIFKEVSSATNALRSMQGFPFYD--KPMRIQYAKTDS 91 (282)
T ss_pred CCCcceEEEEEECCHHHHHHHHHHhcCCeeCC--cEEEEEEeccCc
Confidence 78999999999999999999999999999977 779999987644
No 164
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.66 E-value=1.6e-08 Score=59.31 Aligned_cols=38 Identities=32% Similarity=0.438 Sum_probs=34.1
Q ss_pred ccceEEEEeCCHHHHHHHHHHh-CCCCCCCCCcceEEEecC
Q psy6355 8 CRYLGFIRFDQRIEAERAIQEL-NGTIPKGSNEPITVKFAN 47 (83)
Q Consensus 8 SrG~gFV~F~~~e~A~~AI~~L-nG~~~~G~~~~l~V~fA~ 47 (83)
+||||||.|.+.++|++|++.| ||..+.| ++|.|++|.
T Consensus 47 ~kg~afV~f~~~~~A~~a~~~l~~~~~~~g--~~l~v~~ak 85 (85)
T 2ytc_A 47 RQQCAFIQFATRQAAEVAAEKSFNKLIVNG--RRLNVKWGR 85 (85)
T ss_dssp GGTEEEEEESSHHHHHHHHHTTTTTCEETT--EECCEEECC
T ss_pred CCCEEEEEECCHHHHHHHHHHhcCCeeECC--CEEEEEecC
Confidence 5899999999999999999999 9888877 679998873
No 165
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=98.65 E-value=1.3e-08 Score=65.97 Aligned_cols=43 Identities=16% Similarity=0.056 Sum_probs=36.4
Q ss_pred CCCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecC
Q psy6355 1 MKGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFAN 47 (83)
Q Consensus 1 ~Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~ 47 (83)
+|+. |++||||||.|.+.++|++||+. ++..+.| ++|.|..+.
T Consensus 77 ~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~g--R~I~V~~a~ 119 (126)
T 2hgm_A 77 VDPE-GKITGEAFVQFASQELAEKALGK-HKERIGH--RYIEVFKSS 119 (126)
T ss_dssp CCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCBTT--BCCCCEEEC
T ss_pred ECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEECC--EEEEEEECC
Confidence 3665 99999999999999999999985 7788877 678887764
No 166
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.64 E-value=4.2e-08 Score=61.26 Aligned_cols=42 Identities=10% Similarity=0.144 Sum_probs=35.8
Q ss_pred ccceEEEEeCCHHHHHHHHHHhCCCC--CCCCCcceEEEecCCCCC
Q psy6355 8 CRYLGFIRFDQRIEAERAIQELNGTI--PKGSNEPITVKFANSPSS 51 (83)
Q Consensus 8 SrG~gFV~F~~~e~A~~AI~~LnG~~--~~G~~~~l~V~fA~~~~~ 51 (83)
+||||||.|.+.++|++||+.||+.. +.| ++|.|.|+.....
T Consensus 50 ~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~G--r~l~V~~a~~~~~ 93 (104)
T 1wex_A 50 FKRQALVEFENIDSAKECVTFAADVPVYIAG--QQAFFNYSTSKRI 93 (104)
T ss_dssp TTTEEEEEESSHHHHHHHHHHHHHSCCBSSS--SBCEEEECSSSSC
T ss_pred CCCEEEEEECCHHHHHHHHHHhccCCceECC--EEEEEEEccCccc
Confidence 48999999999999999999998765 666 7899999976543
No 167
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.64 E-value=3.7e-08 Score=62.90 Aligned_cols=43 Identities=14% Similarity=0.173 Sum_probs=36.2
Q ss_pred CccceEEEEeCCHHHHHHHHHHhCCC--CCCCCCcceEEEecCCCCC
Q psy6355 7 FCRYLGFIRFDQRIEAERAIQELNGT--IPKGSNEPITVKFANSPSS 51 (83)
Q Consensus 7 ~SrG~gFV~F~~~e~A~~AI~~LnG~--~~~G~~~~l~V~fA~~~~~ 51 (83)
.+||||||.|.+.++|++||+.||+. .+.| ++|.|.++.....
T Consensus 60 ~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~G--r~l~V~~a~~~~~ 104 (112)
T 1x4f_A 60 RMKSQAFIEMETREDAMAMVDHCLKKALWFQG--RCVKVDLSEKYKK 104 (112)
T ss_dssp TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSS--SCCEEEEECSCSS
T ss_pred cCCCEEEEEECCHHHHHHHHHHhccCCceECC--EEEEEEECccccc
Confidence 46899999999999999999999754 4766 6799999976544
No 168
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.63 E-value=5.3e-08 Score=63.06 Aligned_cols=43 Identities=16% Similarity=0.279 Sum_probs=37.7
Q ss_pred ce-EEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCCC
Q psy6355 10 YL-GFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSS 52 (83)
Q Consensus 10 G~-gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~~ 52 (83)
|| |||.|.+.++|++|++.|||..+.|...+|.|.||.+....
T Consensus 62 Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~l~ 105 (124)
T 2e5i_A 62 GIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLN 105 (124)
T ss_dssp SEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSCCC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCcce
Confidence 86 99999999999999999999999775568999999876543
No 169
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=98.63 E-value=3.1e-08 Score=62.30 Aligned_cols=41 Identities=17% Similarity=0.255 Sum_probs=36.0
Q ss_pred CccceEEEEeCCHHHHHHHHHHhCCCC--CCCCCcceEEEecCCC
Q psy6355 7 FCRYLGFIRFDQRIEAERAIQELNGTI--PKGSNEPITVKFANSP 49 (83)
Q Consensus 7 ~SrG~gFV~F~~~e~A~~AI~~LnG~~--~~G~~~~l~V~fA~~~ 49 (83)
.+||+|||.|.+.++|.+||+.|||.. +.| ++|.|.|+...
T Consensus 55 ~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~G--r~i~V~~S~~k 97 (100)
T 3r27_A 55 PKKRQALVEFEDVLGACNAVNYAADNQIYIAG--HPAFVNYSTSQ 97 (100)
T ss_dssp TTTTEEEEEESSHHHHHHHHHHHHHSCEEETT--EEEEEEECSCS
T ss_pred cCCCEEEEEECCHHHHHHHHHHhcCCCceeCC--cEEEEEecccc
Confidence 368999999999999999999999986 556 78999998754
No 170
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=98.63 E-value=2.5e-08 Score=69.76 Aligned_cols=42 Identities=26% Similarity=0.483 Sum_probs=37.0
Q ss_pred CCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCC
Q psy6355 5 TDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSP 49 (83)
Q Consensus 5 TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~ 49 (83)
||.++|||||.|.+.++|.+|+ .|||..+.| ++|.|.||.+.
T Consensus 250 tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g--~~i~V~~a~~k 291 (292)
T 2ghp_A 250 HSFNNCCAFMVFENKDSAERAL-QMNRSLLGN--REISVSLADKK 291 (292)
T ss_dssp --CCCEEEEEEESSHHHHHHHG-GGTTEEETT--EEEEEEECCCC
T ss_pred CCCCceEEEEEeCCHHHHHHHH-HhcCCEECC--cEEEEEEecCC
Confidence 6999999999999999999999 999999976 78999998753
No 171
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.63 E-value=3.2e-08 Score=61.96 Aligned_cols=41 Identities=20% Similarity=0.231 Sum_probs=35.5
Q ss_pred ccceEEEEeCCHHHHHHHHHHhCCCC--CCCCCcceEEEecCCCC
Q psy6355 8 CRYLGFIRFDQRIEAERAIQELNGTI--PKGSNEPITVKFANSPS 50 (83)
Q Consensus 8 SrG~gFV~F~~~e~A~~AI~~LnG~~--~~G~~~~l~V~fA~~~~ 50 (83)
.||||||.|.+.++|++||+.||+.. +.| ++|.|.+|....
T Consensus 51 ~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~G--r~l~V~~a~~~~ 93 (102)
T 1x4d_A 51 KINEAFIEMATTEDAQAAVDYYTTTPALVFG--KPVRVHLSQKYK 93 (102)
T ss_dssp SSSCEEEEESSHHHHHHHHHHHHHSCCEETT--EECEEEEECCCT
T ss_pred CCCEEEEEECCHHHHHHHHHHHcCCCceECC--cEEEEEECCCCC
Confidence 47999999999999999999999864 666 789999998643
No 172
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=98.62 E-value=5e-08 Score=62.67 Aligned_cols=50 Identities=24% Similarity=0.246 Sum_probs=41.7
Q ss_pred CCCCC--CccceEEEEeCCHHHHHHHHHHhCCCCC-CCCCcceEEEecCCCCC
Q psy6355 2 KGFTD--FCRYLGFIRFDQRIEAERAIQELNGTIP-KGSNEPITVKFANSPSS 51 (83)
Q Consensus 2 Dk~TG--~SrG~gFV~F~~~e~A~~AI~~LnG~~~-~G~~~~l~V~fA~~~~~ 51 (83)
|+.+| .++|||||.|.+.++|++|++.|||..+ .+..+++.+.++.....
T Consensus 38 ~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~ 90 (175)
T 3nmr_A 38 DRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKN 90 (175)
T ss_dssp ECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECGGGCC
T ss_pred cCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEEcccccccc
Confidence 45555 8999999999999999999999999875 56678899998775543
No 173
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.62 E-value=3.7e-08 Score=60.74 Aligned_cols=43 Identities=23% Similarity=0.293 Sum_probs=37.0
Q ss_pred ceEEEEeCCHHHHHHHHHHhCCCCCCCCC---cceEEEecCCCCCC
Q psy6355 10 YLGFIRFDQRIEAERAIQELNGTIPKGSN---EPITVKFANSPSSS 52 (83)
Q Consensus 10 G~gFV~F~~~e~A~~AI~~LnG~~~~G~~---~~l~V~fA~~~~~~ 52 (83)
|||||.|.+.++|++||+.|||..+.|.. ++|.|++|.+...+
T Consensus 51 g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~~~~~~ 96 (108)
T 1x4c_A 51 GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGPRSPS 96 (108)
T ss_dssp TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESSCCSCC
T ss_pred CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCCCCCCC
Confidence 99999999999999999999999886522 67999999875444
No 174
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=98.62 E-value=2.8e-08 Score=69.30 Aligned_cols=47 Identities=19% Similarity=0.234 Sum_probs=42.5
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCC
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPS 50 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~ 50 (83)
|+.+|.++|||||.|.+.++|.+|++.|||..+.| ++|.|.++.+..
T Consensus 130 ~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g--~~i~v~~a~~~~ 176 (284)
T 3smz_A 130 SERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGP--RTLYVHWTDAGQ 176 (284)
T ss_dssp CTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT--EECEEEECCGGG
T ss_pred eCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCC--cEEEEEECCCCC
Confidence 67799999999999999999999999999999966 689999987654
No 175
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.61 E-value=8.9e-08 Score=57.30 Aligned_cols=38 Identities=16% Similarity=0.258 Sum_probs=34.4
Q ss_pred ceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCC
Q psy6355 10 YLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSP 49 (83)
Q Consensus 10 G~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~ 49 (83)
|.|||.|.+.++|++||+.|||..+.| ++|.|.++.+.
T Consensus 55 ~~afV~f~~~~~a~~Ai~~l~g~~~~g--~~l~V~~a~~~ 92 (96)
T 2e44_A 55 AVVNVTYSSKDQARQALDKLNGFQLEN--FTLKVAYIPDE 92 (96)
T ss_dssp EEEEEEESSHHHHHHHHHHHTTCBCSS--CBCEEEECCCC
T ss_pred CEEEEEECCHHHHHHHHHHhCCCEECC--cEEEEEEcCcc
Confidence 449999999999999999999999977 67999999876
No 176
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=98.60 E-value=6.7e-08 Score=61.43 Aligned_cols=45 Identities=20% Similarity=0.322 Sum_probs=39.0
Q ss_pred CCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCC
Q psy6355 5 TDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSS 51 (83)
Q Consensus 5 TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~ 51 (83)
+|.++|||||.|.+.++|++|++.|||..+.| ++|.|.++.....
T Consensus 37 ~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g--~~i~v~~~~~~~~ 81 (166)
T 3md3_A 37 NNKNVNYAFVEYHQSHDANIALQTLNGKQIEN--NIVKINWAFQSQQ 81 (166)
T ss_dssp C-CCEEEEEEEESSHHHHHHHHHHHTTCEETT--EECEEEECCCCCC
T ss_pred CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCC--CeeEEEEcCCCCC
Confidence 47899999999999999999999999999966 6799999876543
No 177
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=98.58 E-value=5.3e-08 Score=63.84 Aligned_cols=46 Identities=22% Similarity=0.216 Sum_probs=39.1
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCC
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPS 50 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~ 50 (83)
|+.+|.++|||||.|.+.++|++|++. ++..+.| +.|.|.++....
T Consensus 48 ~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g--~~l~v~~~~~~~ 93 (196)
T 1l3k_A 48 DPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDG--RVVEPKRAVSRE 93 (196)
T ss_dssp CTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETT--EECEEEECCC--
T ss_pred cCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECC--EEeeeecccCcc
Confidence 678899999999999999999999976 8888877 678999876543
No 178
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=98.58 E-value=4.9e-08 Score=66.84 Aligned_cols=42 Identities=21% Similarity=0.241 Sum_probs=36.8
Q ss_pred CCCccceEEEEeCCHHHHHHHHHHhCCCCCC--CCCcceEEEec
Q psy6355 5 TDFCRYLGFIRFDQRIEAERAIQELNGTIPK--GSNEPITVKFA 46 (83)
Q Consensus 5 TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~--G~~~~l~V~fA 46 (83)
.|.++|||||.|.+.++|.+||..|||..+. +.+.|+.|+||
T Consensus 161 ~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 161 KSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp CSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred CCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 3567899999999999999999999999874 45689999987
No 179
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=98.57 E-value=5.3e-08 Score=63.81 Aligned_cols=45 Identities=13% Similarity=0.250 Sum_probs=38.8
Q ss_pred ccce-EEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCCC
Q psy6355 8 CRYL-GFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSS 52 (83)
Q Consensus 8 SrG~-gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~~ 52 (83)
++|+ |||.|.+.++|++|++.|||..+.|...+|.|.|+.+..-.
T Consensus 64 ~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~~l~ 109 (130)
T 3zzy_A 64 NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSLN 109 (130)
T ss_dssp TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCSSCC
T ss_pred CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCCcee
Confidence 4788 99999999999999999999998665578999999876443
No 180
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.57 E-value=8.3e-08 Score=59.69 Aligned_cols=43 Identities=12% Similarity=0.231 Sum_probs=35.7
Q ss_pred ccceEEEEeCCHHHHHHHHHHhC--CCCCCCCCcceEEEecCCCCCC
Q psy6355 8 CRYLGFIRFDQRIEAERAIQELN--GTIPKGSNEPITVKFANSPSSS 52 (83)
Q Consensus 8 SrG~gFV~F~~~e~A~~AI~~Ln--G~~~~G~~~~l~V~fA~~~~~~ 52 (83)
.||||||.|.+.++|++||+.|| +..+.| ++|.|.|+.....+
T Consensus 50 ~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~G--r~l~V~~a~~~~~~ 94 (101)
T 2cq1_A 50 GKNQAFLELATEEAAITMVNYYSAVTPHLRN--QPIYIQYSNHKELK 94 (101)
T ss_dssp TTTEEEEEESSHHHHHHHHHHHHHSCCEETT--EECEEEECSCSSCC
T ss_pred CCCEEEEEECCHHHHHHHHHHhccCCceECC--cEEEEEEcCcccCc
Confidence 38999999999999999999885 445766 78999999865443
No 181
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.56 E-value=7.6e-08 Score=59.91 Aligned_cols=25 Identities=12% Similarity=0.058 Sum_probs=23.9
Q ss_pred CCccceEEEEeCCHHHHHHHHHHhC
Q psy6355 6 DFCRYLGFIRFDQRIEAERAIQELN 30 (83)
Q Consensus 6 G~SrG~gFV~F~~~e~A~~AI~~Ln 30 (83)
|.+||||||.|.+.++|++||+.|+
T Consensus 49 g~~~G~aFV~f~~~~~a~~Ai~~~~ 73 (114)
T 2dnl_A 49 FPPKGYAFLLFQEESSVQALIDACL 73 (114)
T ss_dssp SCTTSEEEECCSSHHHHHHHHHHSE
T ss_pred CCcccEEEEEECCHHHHHHHHHhhh
Confidence 8999999999999999999999993
No 182
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=98.55 E-value=6.8e-08 Score=66.12 Aligned_cols=40 Identities=20% Similarity=0.306 Sum_probs=36.4
Q ss_pred ccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCC
Q psy6355 8 CRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSP 49 (83)
Q Consensus 8 SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~ 49 (83)
+||||||.|.+.++|++||+.|||..+.| ++|.|.++...
T Consensus 41 ~~g~afV~f~~~~~A~~Ai~~lng~~~~g--~~l~v~~s~~~ 80 (205)
T 3tyt_A 41 KPGAAMVEMADGYAVDRAITHLNNNFMFG--QKMNVCVSKQP 80 (205)
T ss_dssp STTCEEEEESSHHHHHHHHHHHTTCEETT--EECEEEECSCS
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCEECC--ceEEEEEccCC
Confidence 58999999999999999999999999977 78999998643
No 183
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.55 E-value=1.1e-07 Score=61.17 Aligned_cols=43 Identities=19% Similarity=0.397 Sum_probs=36.3
Q ss_pred ccceEEEEeCCHHHHHHHHHHhCC--CCCCCCCcceEEEecCCCCCC
Q psy6355 8 CRYLGFIRFDQRIEAERAIQELNG--TIPKGSNEPITVKFANSPSSS 52 (83)
Q Consensus 8 SrG~gFV~F~~~e~A~~AI~~LnG--~~~~G~~~~l~V~fA~~~~~~ 52 (83)
.||||||.|.+.++|++||+.||+ ..+.| ++|.|.|+.....+
T Consensus 66 ~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~G--r~l~V~~a~~k~~~ 110 (119)
T 2ad9_A 66 GKNQAFIEMNTEEAANTMVNYYTSVTPVLRG--QPIYIQFSNHKELK 110 (119)
T ss_dssp GGTEEEEECSCHHHHHHHHHHHHHHCCCBTT--BCCEEEECSSSSCC
T ss_pred CCCEEEEEECCHHHHHHHHHHhccCCceECC--eEEEEEEccCCCCC
Confidence 489999999999999999999985 46766 78999999765444
No 184
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.55 E-value=4.1e-08 Score=62.14 Aligned_cols=43 Identities=19% Similarity=0.397 Sum_probs=35.8
Q ss_pred ccceEEEEeCCHHHHHHHHHHhCC--CCCCCCCcceEEEecCCCCCC
Q psy6355 8 CRYLGFIRFDQRIEAERAIQELNG--TIPKGSNEPITVKFANSPSSS 52 (83)
Q Consensus 8 SrG~gFV~F~~~e~A~~AI~~LnG--~~~~G~~~~l~V~fA~~~~~~ 52 (83)
.||||||.|.+.++|++||+.|++ ..+.| ++|.|.+|.....+
T Consensus 51 ~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~G--r~l~V~~A~~~~~~ 95 (105)
T 1sjq_A 51 GKNQAFIEMNTEEAANTMVNYYTSVTPVLRG--QPIYIQFSNHKELK 95 (105)
T ss_dssp TTTEEEEEESSHHHHHHHHHHHTTSCCEETT--EECCBCCCSSSSCC
T ss_pred CCCEEEEEECCHHHHHHHHHHhccCCceECC--EEEEEEEcCCCCCC
Confidence 389999999999999999999975 45766 78999999765433
No 185
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.55 E-value=2.1e-08 Score=64.59 Aligned_cols=41 Identities=12% Similarity=-0.011 Sum_probs=35.7
Q ss_pred CCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecC
Q psy6355 4 FTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFAN 47 (83)
Q Consensus 4 ~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~ 47 (83)
.+|++||||||.|.+.++|++||+. |++.+.| +.|.|..+.
T Consensus 63 ~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~g--R~i~V~~a~ 103 (123)
T 2dha_A 63 PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGK--RYIELFRST 103 (123)
T ss_dssp TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSS--CEECCEEEC
T ss_pred CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCC--eEEEEEECC
Confidence 4899999999999999999999986 9988866 568887764
No 186
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.52 E-value=4.6e-08 Score=58.71 Aligned_cols=43 Identities=7% Similarity=0.062 Sum_probs=36.3
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCC
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPS 50 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~ 50 (83)
|+.+|. ||||.|.+.++|++||+ |||..+.| ++|.|+++....
T Consensus 41 ~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g--~~l~V~~a~~~~ 83 (94)
T 2e5g_A 41 DKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGG--HRLRVRPREQKE 83 (94)
T ss_dssp CSSSCC---EEEEEESSHHHHHHHHT-CSCCEETT--EECCCBCSCCSC
T ss_pred cCCCCc---EEEEEECCHHHHHHHHh-cCCeEECC--EEEEEEECCcCC
Confidence 556665 99999999999999999 99999977 678999876543
No 187
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=98.50 E-value=1.6e-08 Score=61.42 Aligned_cols=43 Identities=14% Similarity=0.277 Sum_probs=36.9
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCC
Q psy6355 2 KGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSP 49 (83)
Q Consensus 2 Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~ 49 (83)
|+ +|.++|||||.|.+.++|++|++ ||..+.| +.|.|.++.+.
T Consensus 44 ~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g--~~l~v~~a~~~ 86 (102)
T 2xs2_A 44 DR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHG--KKLKLGPAIRK 86 (102)
T ss_dssp CT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETT--EECEEEEEEEC
T ss_pred CC-CCCccceEEEEECCHHHHHHHHh--CCCeECC--EEEEEEECCcC
Confidence 66 89999999999999999999998 8888877 56888877644
No 188
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=98.49 E-value=1.4e-07 Score=67.18 Aligned_cols=41 Identities=27% Similarity=0.426 Sum_probs=35.5
Q ss_pred CccceEEEEeCCHHHHHHHHHHhCCCCC------------CCCCcceEEEecCCC
Q psy6355 7 FCRYLGFIRFDQRIEAERAIQELNGTIP------------KGSNEPITVKFANSP 49 (83)
Q Consensus 7 ~SrG~gFV~F~~~e~A~~AI~~LnG~~~------------~G~~~~l~V~fA~~~ 49 (83)
.+||||||.|.+.++|+.|++.|||..+ .| ++|.|++|...
T Consensus 177 ~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~g--r~L~V~wA~~~ 229 (240)
T 3u1l_A 177 ESKNCGFVKFKYQANAEFAKEAMSNQTLLLPSDKEWDDRREG--TGLLVKWANED 229 (240)
T ss_dssp GGGTEEEEEESSHHHHHHHHHHHTTCCCCCTTSTTGGGGGGS--CCCEEEECC--
T ss_pred CCCCEEEEEeCCHHHHHHHHHHhCCCEEeccccccccccCCC--CEEEEEEccCC
Confidence 3689999999999999999999999988 44 67999999754
No 189
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=98.48 E-value=1e-07 Score=55.83 Aligned_cols=35 Identities=20% Similarity=0.469 Sum_probs=31.4
Q ss_pred CccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEE
Q psy6355 7 FCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVK 44 (83)
Q Consensus 7 ~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~ 44 (83)
.+||||||.|.+.++|++|+ .|||..+.| ++|.|+
T Consensus 51 ~~kg~afV~f~~~~~a~~A~-~l~g~~~~g--~~l~V~ 85 (87)
T 2hzc_A 51 QDKNFAFLEFRSVDETTQAM-AFDGIIFQG--QSLKIR 85 (87)
T ss_dssp SSSSEEEEEESSHHHHHHHG-GGTTCEETT--EECEEE
T ss_pred CCCcEEEEEcCCHHHHHHHH-hcCCCEECC--eEEEEe
Confidence 45899999999999999999 999999977 568776
No 190
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=98.46 E-value=2.6e-07 Score=63.20 Aligned_cols=40 Identities=23% Similarity=0.286 Sum_probs=36.3
Q ss_pred ccceEEEEeCCHHHHHHHHHHhCCCCCC-CCCcceEEEecCCC
Q psy6355 8 CRYLGFIRFDQRIEAERAIQELNGTIPK-GSNEPITVKFANSP 49 (83)
Q Consensus 8 SrG~gFV~F~~~e~A~~AI~~LnG~~~~-G~~~~l~V~fA~~~ 49 (83)
++|||||.|.+.++|++|++.|||..+. | ++|.|.|+.++
T Consensus 188 ~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g--~~l~v~~a~~~ 228 (229)
T 2adc_A 188 DRKMALIQMGSVEEAVQALIDLHNHDLGEN--HHLRVSFSKST 228 (229)
T ss_dssp STTCEEEEESSHHHHHHHHHHHTTCBSSSS--CBCEEEECSSC
T ss_pred CCcEEEEEECCHHHHHHHHHHHCCCccCCC--CeEEEEEecCC
Confidence 6899999999999999999999999996 5 67999998754
No 191
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=98.46 E-value=2e-07 Score=61.66 Aligned_cols=40 Identities=23% Similarity=0.286 Sum_probs=36.0
Q ss_pred ccceEEEEeCCHHHHHHHHHHhCCCCCC-CCCcceEEEecCCC
Q psy6355 8 CRYLGFIRFDQRIEAERAIQELNGTIPK-GSNEPITVKFANSP 49 (83)
Q Consensus 8 SrG~gFV~F~~~e~A~~AI~~LnG~~~~-G~~~~l~V~fA~~~ 49 (83)
++|||||.|.+.++|.+|++.|||..+. | ++|.|.|+.++
T Consensus 157 ~~g~afV~f~~~~~A~~A~~~l~g~~~~~g--~~l~v~~a~~~ 197 (198)
T 1qm9_A 157 DRKMALIQMGSVEEAVQALIDLHNHDLGEN--HHLRVSFSKST 197 (198)
T ss_dssp TSSCEEEECSSHHHHHHHHHHHTSSCCSSC--CSCCEEEECCC
T ss_pred CCcEEEEEeCCHHHHHHHHHHhcCCccCCC--CeEEEEeeccc
Confidence 5899999999999999999999999996 5 67999998754
No 192
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=98.42 E-value=5.4e-08 Score=63.91 Aligned_cols=42 Identities=17% Similarity=0.369 Sum_probs=37.4
Q ss_pred CCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCC
Q psy6355 5 TDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSP 49 (83)
Q Consensus 5 TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~ 49 (83)
++.++|||||.|.+.++|++|+ .|||..+.| ++|.|.++...
T Consensus 47 ~~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g--~~i~v~~~~~~ 88 (198)
T 2yh0_A 47 INQDKNFAFLEFRSVDETTQAM-AFDGIIFQG--QSLKIRRPHDY 88 (198)
T ss_dssp EETTTTEEEEEESCSHHHHHHG-GGTTEEETT--EEEEEECCCCC
T ss_pred ecCCCCEEEEEeCCHHHHHHHH-HhcCCEEcC--ceEEEeCCCCC
Confidence 4788999999999999999999 899999976 67999987654
No 193
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=98.41 E-value=4.2e-07 Score=56.75 Aligned_cols=40 Identities=20% Similarity=0.275 Sum_probs=31.7
Q ss_pred ceEEEEeCCHHHHHHHHHHhCCCCCCCCC---cceEEEecCCC
Q psy6355 10 YLGFIRFDQRIEAERAIQELNGTIPKGSN---EPITVKFANSP 49 (83)
Q Consensus 10 G~gFV~F~~~e~A~~AI~~LnG~~~~G~~---~~l~V~fA~~~ 49 (83)
|||||.|.+.++|++||+.|||..+.|.. .-|.|..+.+.
T Consensus 52 g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~~~ 94 (115)
T 3beg_B 52 GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGPR 94 (115)
T ss_dssp SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC--
T ss_pred CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCCCC
Confidence 99999999999999999999999997733 12666665543
No 194
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=98.40 E-value=2e-07 Score=59.94 Aligned_cols=42 Identities=17% Similarity=0.369 Sum_probs=36.9
Q ss_pred CCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCC
Q psy6355 5 TDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSP 49 (83)
Q Consensus 5 TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~ 49 (83)
++.++|||||.|.+.++|++|+ .|||..+.| ++|.|.++...
T Consensus 47 ~~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g--~~i~v~~~~~~ 88 (172)
T 2g4b_A 47 INQDKNFAFLEFRSVDETTQAM-AFDGIIFQG--QSLKIRRPHDY 88 (172)
T ss_dssp EETTTTEEEEEESSHHHHHHHG-GGTTCEETT--EECEEECCSSC
T ss_pred ecCCCCEEEEEeCCHHHHHHHH-HhCCcEecC--ceeeecCCccc
Confidence 4678999999999999999999 899999976 67999987654
No 195
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=98.38 E-value=2.8e-07 Score=64.41 Aligned_cols=43 Identities=21% Similarity=0.371 Sum_probs=36.2
Q ss_pred CCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCC
Q psy6355 6 DFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPS 50 (83)
Q Consensus 6 G~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~ 50 (83)
|.++|||||.|.+.++|++|++.|||..+.| ++|.|.++.+..
T Consensus 156 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~v~~a~~~~ 198 (292)
T 2ghp_A 156 NTSRRFAYIDVTSKEDARYCVEKLNGLKIEG--YTLVTKVSNPLE 198 (292)
T ss_dssp ---CCEEEEECSSHHHHHHHHHHHTTCEETT--EECEEEECCCC-
T ss_pred CCcceEEEEEECCHHHHHHHHHHhCCCEeCC--cEEEEEECCCCc
Confidence 7899999999999999999999999999977 789999987654
No 196
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=98.34 E-value=3.1e-07 Score=58.76 Aligned_cols=44 Identities=23% Similarity=0.298 Sum_probs=35.2
Q ss_pred CCCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCC
Q psy6355 1 MKGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANS 48 (83)
Q Consensus 1 ~Dk~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~ 48 (83)
.|+.+|.++|||||.|.+.++|++|++. ++.+.| ++|.|.++.+
T Consensus 37 ~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g--~~i~v~~~~~ 80 (167)
T 2cjk_A 37 KDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDG--KVIDPKRAIP 80 (167)
T ss_dssp CCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETT--EECCCEECCC
T ss_pred ECCCCCCccceEEEEEccHHHHHHHHhc--ccccCC--eEcccccccc
Confidence 3677999999999999999999999985 455655 4566776654
No 197
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=98.32 E-value=5.8e-07 Score=62.49 Aligned_cols=37 Identities=24% Similarity=0.480 Sum_probs=34.2
Q ss_pred cceEEEEeCCHHHHHHHHHHhCCCCCC-CCCcceEEEecC
Q psy6355 9 RYLGFIRFDQRIEAERAIQELNGTIPK-GSNEPITVKFAN 47 (83)
Q Consensus 9 rG~gFV~F~~~e~A~~AI~~LnG~~~~-G~~~~l~V~fA~ 47 (83)
+|||||.|.+.++|++|++.|||..+. | ++|.|.|+.
T Consensus 244 ~g~afV~f~~~~~A~~A~~~l~g~~~~~g--~~l~v~~ak 281 (282)
T 3pgw_A 244 HDIAFVEFDNEVQAGAARDALQGFKITQN--NAMKISFAK 281 (282)
T ss_pred CcEEEEEeCCHHHHHHHHHHcCCcEeCCC--CEEEEEEec
Confidence 699999999999999999999999986 5 689999985
No 198
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=98.27 E-value=8.2e-07 Score=61.89 Aligned_cols=46 Identities=15% Similarity=0.181 Sum_probs=38.7
Q ss_pred CCCCccceEEEEeCCHHHHHHHHHHhCCCC-C-CCCCcceEEEecCCC
Q psy6355 4 FTDFCRYLGFIRFDQRIEAERAIQELNGTI-P-KGSNEPITVKFANSP 49 (83)
Q Consensus 4 ~TG~SrG~gFV~F~~~e~A~~AI~~LnG~~-~-~G~~~~l~V~fA~~~ 49 (83)
.+|.++|||||.|.+.++|.+|++.||+.. + .+..++|.|.++...
T Consensus 132 ~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 132 DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQF 179 (261)
T ss_dssp TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCE
T ss_pred CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeecccc
Confidence 479999999999999999999999996554 3 445689999998754
No 199
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=98.27 E-value=6.3e-07 Score=60.91 Aligned_cols=45 Identities=13% Similarity=0.110 Sum_probs=36.1
Q ss_pred CCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCCC
Q psy6355 5 TDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSS 52 (83)
Q Consensus 5 TG~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~~ 52 (83)
+|.+||||||.|.+.++|++|++.++ ..+.| ++|.|.++..-.++
T Consensus 146 ~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~G--r~l~V~~~~~y~~~ 190 (193)
T 2voo_A 146 HKAFKGSIFVVFDSIESAKKFVETPG-QKYKE--TDLLILFKDDYFAK 190 (193)
T ss_dssp TCCEEEEEEEEESSHHHHHHHHHCTT-CEETT--EECEEEETTTC---
T ss_pred CCCcccEEEEEECCHHHHHHHHHhCC-CeECC--EEEEEEEhHHHHHH
Confidence 58999999999999999999998765 47877 67999987765444
No 200
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=98.27 E-value=1.2e-06 Score=57.87 Aligned_cols=39 Identities=21% Similarity=0.410 Sum_probs=35.7
Q ss_pred cceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCC
Q psy6355 9 RYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSP 49 (83)
Q Consensus 9 rG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~ 49 (83)
+|||||.|.+.++|++|++.|||..+.| ++|.|.++...
T Consensus 41 ~g~afV~f~~~~~a~~A~~~l~~~~~~g--~~l~v~~a~~~ 79 (198)
T 1qm9_A 41 KENALVQMADGNQAQLAMSHLNGHKLHG--KPIRITLSKHQ 79 (198)
T ss_dssp SSCCEEECTTTHHHHHHHHHHTTCCCSS--CCCEEEECCCC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCeecC--eEEEEEEecCC
Confidence 8999999999999999999999999977 67999998754
No 201
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=98.25 E-value=1.8e-06 Score=58.98 Aligned_cols=39 Identities=21% Similarity=0.410 Sum_probs=35.7
Q ss_pred cceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCC
Q psy6355 9 RYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSP 49 (83)
Q Consensus 9 rG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~ 49 (83)
+|||||.|.+.++|++|++.|||..+.| ++|.|.++...
T Consensus 72 ~g~afV~F~~~~~A~~Ai~~l~g~~~~g--~~l~v~~a~~~ 110 (229)
T 2adc_A 72 KENALVQMADGNQAQLAMSHLNGHKLHG--KPIRITLSKHQ 110 (229)
T ss_dssp SCCEEEEESCHHHHHHHHHHHTTCBCSS--SBCEEECCSCC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCeECC--eEEEEEEecCc
Confidence 8999999999999999999999999976 67999998754
No 202
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=98.25 E-value=6.2e-07 Score=53.84 Aligned_cols=41 Identities=17% Similarity=0.155 Sum_probs=30.4
Q ss_pred CccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCC
Q psy6355 7 FCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSS 51 (83)
Q Consensus 7 ~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~ 51 (83)
.|||||||.|.+.++|+ .|+|..+.+..+.|.|++|.+...
T Consensus 46 ~srGfaFV~F~~~~~A~----~~~~~~~~~~g~~v~v~~a~~k~~ 86 (89)
T 3d2w_A 46 PFRAFAFVTFADDKVAQ----SLCGEDLIIKGISVHISNAEPKHN 86 (89)
T ss_dssp SCCSEEEEEESCHHHHH----HHTTCEEEETTEEEEEEECC----
T ss_pred CCCCEEEEEECCHHHHH----HHcCCCcccCCEEEEEEEcCCCCc
Confidence 38999999999999988 368876554457899999876544
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.24 E-value=8e-07 Score=66.17 Aligned_cols=40 Identities=25% Similarity=0.385 Sum_probs=34.5
Q ss_pred ccceEEEEeCCHHHHHHHHHHhCCCCC---CCCCcceEEEecC
Q psy6355 8 CRYLGFIRFDQRIEAERAIQELNGTIP---KGSNEPITVKFAN 47 (83)
Q Consensus 8 SrG~gFV~F~~~e~A~~AI~~LnG~~~---~G~~~~l~V~fA~ 47 (83)
+||||||.|.+.++|++||+.|||+.+ .|...+|.|.|+.
T Consensus 55 ~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~~~~ 97 (345)
T 3tht_A 55 NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVE 97 (345)
T ss_dssp TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEECS
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEEEee
Confidence 689999999999999999999999975 3444478889885
No 204
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=98.16 E-value=1.5e-06 Score=60.59 Aligned_cols=41 Identities=44% Similarity=0.659 Sum_probs=36.8
Q ss_pred CCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCC
Q psy6355 6 DFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANS 48 (83)
Q Consensus 6 G~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~ 48 (83)
+.++|||||.|.+.++|++|+..|||..+.| ++|.|.++.+
T Consensus 55 ~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g--~~l~v~~a~~ 95 (261)
T 3sde_A 55 NRDRGFGFIRLESRTLAEIAKAELDGTILKS--RPLRIRFATH 95 (261)
T ss_dssp ETTTTEEEEECSSHHHHHHHHHHHTTCEETT--EECEEEECCC
T ss_pred eCCCcEEEEEECCHHHHHHHHHHcCCcEECC--ceeEeeeccc
Confidence 3579999999999999999999999999966 7899999865
No 205
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.81 E-value=1.2e-05 Score=47.24 Aligned_cols=42 Identities=19% Similarity=0.161 Sum_probs=31.1
Q ss_pred CccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCCCC
Q psy6355 7 FCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSS 52 (83)
Q Consensus 7 ~SrG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~~~ 52 (83)
.+||||||.|.+.++|++ |++..+.+..++|.|.++.+....
T Consensus 40 ~~~g~afV~f~~~~~a~~----~~~~~~~~~g~~l~v~~a~~~~~~ 81 (88)
T 1wf0_A 40 PFRAFAFVTFADDQIAQS----LCGEDLIIKGISVHISNAEPKHNS 81 (88)
T ss_dssp SCCSCCEEECSCHHHHHH----TTTCEEEETTEEEEEECCCCCCCC
T ss_pred CCCCEEEEEECCHHHHHH----HhcCCceeCCEEEEEEecCCCCCC
Confidence 379999999999999974 466654333478999988765443
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.81 E-value=1.4e-05 Score=49.80 Aligned_cols=37 Identities=19% Similarity=0.218 Sum_probs=32.3
Q ss_pred ceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCC
Q psy6355 10 YLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSP 49 (83)
Q Consensus 10 G~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~ 49 (83)
+.+||.|.+.++|.+||+ |||..+.| +.|+|+++.+.
T Consensus 50 d~~fVtF~d~~sAlaAi~-mnG~~v~G--r~LkV~lkt~d 86 (91)
T 2dnr_A 50 DKMWVTFLEGSSALNVLS-LNGKELLN--RTITIALKSPS 86 (91)
T ss_dssp SSEEEEESSHHHHHHGGG-GTTCEETT--EEEEEEECCCS
T ss_pred CCEEEEECChHHHHHHHh-cCCeEeCC--eEEEEEeCCCC
Confidence 448999999999999998 99999977 67999988654
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.31 E-value=0.00013 Score=45.71 Aligned_cols=32 Identities=16% Similarity=0.294 Sum_probs=28.8
Q ss_pred EEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEec
Q psy6355 12 GFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFA 46 (83)
Q Consensus 12 gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA 46 (83)
+||.|.+.++|.+||+ |||.++.| +.|.|++.
T Consensus 61 ~fVtF~d~~sAl~AI~-ldG~~v~G--r~L~V~~k 92 (95)
T 1ufw_A 61 MLVTFADSHSALSVLD-VDGMKVKG--RAVKISGP 92 (95)
T ss_dssp EEEECSCSHHHHHHHH-GGGSEETT--EEEEEECC
T ss_pred EEEEEcChHHHHHHHh-cCCeeeCC--eEEEEecc
Confidence 9999999999999998 99999977 67888764
No 208
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=96.98 E-value=0.00031 Score=44.99 Aligned_cols=27 Identities=7% Similarity=-0.041 Sum_probs=24.5
Q ss_pred CCccceEEEEeCCHHHHHHHHHHhCCC
Q psy6355 6 DFCRYLGFIRFDQRIEAERAIQELNGT 32 (83)
Q Consensus 6 G~SrG~gFV~F~~~e~A~~AI~~LnG~ 32 (83)
..++|||||.|.+.++|++|++.+++.
T Consensus 10 ~~~~G~~fV~f~~~~~A~~al~~~~~~ 36 (158)
T 2kn4_A 10 KTLKGETTTEAVDAATAEKVFKQYAND 36 (158)
T ss_dssp SSCEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHhHHHHHHhhccc
Confidence 478999999999999999999998864
No 209
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=96.66 E-value=0.00083 Score=42.88 Aligned_cols=40 Identities=15% Similarity=0.000 Sum_probs=35.3
Q ss_pred CCccceEEEEeCCHHHHHHHHHHh-CCCCCCCCCcceEEEecCC
Q psy6355 6 DFCRYLGFIRFDQRIEAERAIQEL-NGTIPKGSNEPITVKFANS 48 (83)
Q Consensus 6 G~SrG~gFV~F~~~e~A~~AI~~L-nG~~~~G~~~~l~V~fA~~ 48 (83)
..-+|+++|.|.+.++|++|++.| ||..++| ++.+.++..
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G---~~~~~~a~~ 50 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG---EWTYDDATK 50 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC---EEEEETTTT
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC---ceecccccC
Confidence 356899999999999999999999 9999977 688888764
No 210
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.52 E-value=0.19 Score=32.02 Aligned_cols=39 Identities=18% Similarity=0.196 Sum_probs=29.5
Q ss_pred eEEEEeCC-HHHHHHHHHHhC--CCCCCCCCcceEEEecCCCCC
Q psy6355 11 LGFIRFDQ-RIEAERAIQELN--GTIPKGSNEPITVKFANSPSS 51 (83)
Q Consensus 11 ~gFV~F~~-~e~A~~AI~~Ln--G~~~~G~~~~l~V~fA~~~~~ 51 (83)
.|||+|.+ .++|..|++.|| |..+.| ..++++...-..+
T Consensus 57 tgfVrf~~~~~~A~~av~~ln~~~~~i~g--~~~~~evL~GeeE 98 (121)
T 1owx_A 57 EGIILFKEKAKEALGKAKDANNGNLQLRN--KEVTWEVLEGEVE 98 (121)
T ss_dssp EEEEEESSCHHHHHHHHHHTTTSCBCTTS--SSEEEEECCHHHH
T ss_pred EEEEEECCChHHHHHHHHHhhcCCcEEeC--cEEEEEECCCHHH
Confidence 59999999 899999999996 445655 5677776654433
No 211
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=90.94 E-value=0.18 Score=32.49 Aligned_cols=33 Identities=24% Similarity=0.220 Sum_probs=28.7
Q ss_pred ceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEE
Q psy6355 10 YLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVK 44 (83)
Q Consensus 10 G~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~ 44 (83)
|=|+|.|.|...|.+|.-.|||..+.| +.|.|.
T Consensus 63 ~GAivef~d~~~AgKasLaL~G~ef~g--r~Lr~g 95 (117)
T 2l9w_A 63 NGAIIIFRDSKFAAKMLMILNGSQFQG--KVIRSG 95 (117)
T ss_dssp TEEEEECSCHHHHHHHHHHHSSEEETT--EEEEEE
T ss_pred CceEEEEccchhhHHHHhhcCCeeecC--eEEEec
Confidence 349999999999999999999999976 567775
No 212
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=84.93 E-value=0.58 Score=29.37 Aligned_cols=37 Identities=24% Similarity=0.233 Sum_probs=31.7
Q ss_pred EEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEecCCCC
Q psy6355 12 GFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPS 50 (83)
Q Consensus 12 gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA~~~~ 50 (83)
-.|.|.+.++|.+|-..||+..+.| ..|+|-|+.+..
T Consensus 49 irv~F~~~~~A~~AR~~Lh~~~f~g--~~~r~YFgq~~~ 85 (104)
T 1wey_A 49 VRINFSNPLSAADARLRLHKTEFLG--KEMKLYFAQTLH 85 (104)
T ss_dssp EEEECSSTTHHHHHHHTSTTSEETT--EECEEECCCCSS
T ss_pred EEEEeCChHHHHHHHHHhccceecC--ceeEEEecCCCC
Confidence 4689999999999999999999877 579999987543
No 213
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=74.27 E-value=2 Score=27.95 Aligned_cols=35 Identities=26% Similarity=0.239 Sum_probs=28.1
Q ss_pred cceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEec
Q psy6355 9 RYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFA 46 (83)
Q Consensus 9 rG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA 46 (83)
..|-.|+|.++.+|.+|+.. ||..+.|. =|-|...
T Consensus 62 ~NWikItYds~~~A~rAL~~-NG~ii~G~--mIGV~Py 96 (132)
T 3p3d_A 62 NSWTKITYDNPASAVDALLE-NGAVFNGV--LLGVIPY 96 (132)
T ss_dssp TTEEEEEBSSHHHHHHHHTT-TTCEETTE--ECEEEEC
T ss_pred CcEEEEEcCCHHHHHHHHHh-CCeEeCcE--EEEEEEC
Confidence 56889999999999999975 99998774 3556544
No 214
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=73.95 E-value=3.1 Score=25.13 Aligned_cols=38 Identities=24% Similarity=0.368 Sum_probs=30.2
Q ss_pred ceEEEEeCCHHHHHHHHHHhCCCCC---CCCCcceEEEecC
Q psy6355 10 YLGFIRFDQRIEAERAIQELNGTIP---KGSNEPITVKFAN 47 (83)
Q Consensus 10 G~gFV~F~~~e~A~~AI~~LnG~~~---~G~~~~l~V~fA~ 47 (83)
.-|+|.|.+.++...-.+.++|+.+ .|...+-.|+||-
T Consensus 46 SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~VE~AP 86 (91)
T 1uw4_A 46 ARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAIVEFAP 86 (91)
T ss_dssp EEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECEEEECS
T ss_pred eEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeEEEEcC
Confidence 4589999999999999999999985 2444455677774
No 215
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=67.44 E-value=3.6 Score=26.17 Aligned_cols=35 Identities=29% Similarity=0.356 Sum_probs=26.5
Q ss_pred cceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEe
Q psy6355 9 RYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKF 45 (83)
Q Consensus 9 rG~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~f 45 (83)
..|=.|.|.++.+|++|+.. ||..+.|. .-|-|+.
T Consensus 59 ~NWihI~Y~s~~~A~rAL~k-NG~ii~g~-~mIGV~p 93 (119)
T 1wwh_A 59 GNWMHIRYQSKLQARKALSK-DGRIFGES-IMIGVKP 93 (119)
T ss_dssp SSEEEEEESSHHHHHHHHTT-TTCEETTT-EECEEEE
T ss_pred CCeEEEEeCCHHHHHHHHHh-CCeEecCC-EEEEEEE
Confidence 45888999999999999975 99988542 2344554
No 216
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=61.16 E-value=9.7 Score=23.33 Aligned_cols=38 Identities=26% Similarity=0.325 Sum_probs=30.5
Q ss_pred ceEEEEeCCHHHHHHHHHHhCCCCC---CCCCcceEEEecC
Q psy6355 10 YLGFIRFDQRIEAERAIQELNGTIP---KGSNEPITVKFAN 47 (83)
Q Consensus 10 G~gFV~F~~~e~A~~AI~~LnG~~~---~G~~~~l~V~fA~ 47 (83)
.-|+|.|.+.++...-.+.++|+.+ .|..-+-.|+||-
T Consensus 54 SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a~VE~AP 94 (97)
T 2l08_A 54 SRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPAVVEFAP 94 (97)
T ss_dssp CCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEEEEEECC
T ss_pred eEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeeeEEEecC
Confidence 4589999999999999999999975 3455566677774
No 217
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=45.89 E-value=19 Score=22.31 Aligned_cols=20 Identities=15% Similarity=0.265 Sum_probs=18.1
Q ss_pred eEEEEeCCHHHHHHHHHHhC
Q psy6355 11 LGFIRFDQRIEAERAIQELN 30 (83)
Q Consensus 11 ~gFV~F~~~e~A~~AI~~Ln 30 (83)
-|||.|.+++.|..|++.++
T Consensus 51 sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 51 SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp EEEEECSCHHHHHHHHHHHH
T ss_pred eEEEEecCHHHHHHHHHhcc
Confidence 49999999999999999875
No 218
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=35.38 E-value=20 Score=20.47 Aligned_cols=12 Identities=25% Similarity=0.373 Sum_probs=9.8
Q ss_pred CccceEEEEeCC
Q psy6355 7 FCRYLGFIRFDQ 18 (83)
Q Consensus 7 ~SrG~gFV~F~~ 18 (83)
..||||||.-.+
T Consensus 12 ~~KGfGFI~~~d 23 (74)
T 2k5n_A 12 KDKGFGFIKDEN 23 (74)
T ss_dssp TTTTEEEEEESS
T ss_pred CCCCeEEEecCC
Confidence 468999999876
No 219
>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomi 2, protein structure initiative; NMR {Shewanella oneidensis}
Probab=34.06 E-value=23 Score=20.30 Aligned_cols=12 Identities=33% Similarity=0.509 Sum_probs=10.0
Q ss_pred CccceEEEEeCC
Q psy6355 7 FCRYLGFIRFDQ 18 (83)
Q Consensus 7 ~SrG~gFV~F~~ 18 (83)
..||||||.-.+
T Consensus 10 ~~KGfGFI~~~d 21 (74)
T 2kcm_A 10 AAKKYGFIQGDD 21 (74)
T ss_dssp TTTTEEEEEETT
T ss_pred CCCCEEEEecCC
Confidence 468999999876
No 220
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=33.53 E-value=21 Score=19.66 Aligned_cols=12 Identities=25% Similarity=0.346 Sum_probs=9.7
Q ss_pred CccceEEEEeCC
Q psy6355 7 FCRYLGFIRFDQ 18 (83)
Q Consensus 7 ~SrG~gFV~F~~ 18 (83)
..||||||.-.+
T Consensus 11 ~~kGfGFI~~~~ 22 (66)
T 1c9o_A 11 NEKGYGFIEVEG 22 (66)
T ss_dssp TTTTEEEEEETT
T ss_pred CCCCeEEEecCC
Confidence 368999999775
No 221
>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=32.96 E-value=19 Score=20.71 Aligned_cols=12 Identities=25% Similarity=0.335 Sum_probs=9.7
Q ss_pred CccceEEEEeCC
Q psy6355 7 FCRYLGFIRFDQ 18 (83)
Q Consensus 7 ~SrG~gFV~F~~ 18 (83)
..||||||.-.+
T Consensus 18 ~~kGfGFI~~~~ 29 (79)
T 1h95_A 18 VRNGYGFINRND 29 (79)
T ss_dssp TTTTEEEEEEGG
T ss_pred CCCCcEEEecCC
Confidence 468999999765
No 222
>3ulj_A LIN28B, DNA-binding protein; beta barrel, cold shock domain fold, nucleic acid binding, D binding protein; 1.06A {Silurana} PDB: 4a4i_A
Probab=32.78 E-value=16 Score=21.86 Aligned_cols=9 Identities=33% Similarity=0.431 Sum_probs=7.6
Q ss_pred CccceEEEE
Q psy6355 7 FCRYLGFIR 15 (83)
Q Consensus 7 ~SrG~gFV~ 15 (83)
..||||||.
T Consensus 18 ~~KGfGFI~ 26 (90)
T 3ulj_A 18 VRMGFGFIS 26 (90)
T ss_dssp TTTTEEEEE
T ss_pred CCCCeEEeE
Confidence 468999996
No 223
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, STRU genomics, oxford protein production facility, OPPF, gene RE; 2.60A {Neisseria meningitidis MC58}
Probab=32.67 E-value=25 Score=19.54 Aligned_cols=12 Identities=33% Similarity=0.465 Sum_probs=9.8
Q ss_pred CccceEEEEeCC
Q psy6355 7 FCRYLGFIRFDQ 18 (83)
Q Consensus 7 ~SrG~gFV~F~~ 18 (83)
..||||||.-.+
T Consensus 11 ~~kGfGFI~~~~ 22 (67)
T 3cam_A 11 DAKGFGFITPDE 22 (67)
T ss_dssp TTTTEEEEEETT
T ss_pred CCCCeEEEecCC
Confidence 468999999765
No 224
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.63 E-value=57 Score=20.17 Aligned_cols=33 Identities=18% Similarity=0.359 Sum_probs=23.4
Q ss_pred ceEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEe
Q psy6355 10 YLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKF 45 (83)
Q Consensus 10 G~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~f 45 (83)
+-|+|.|.+.+.|++.++. .-+.+.+ .+|.|.-
T Consensus 48 ~~AvItF~d~~va~rVL~k-~~H~L~~--~~LsV~P 80 (104)
T 2dhx_A 48 CGGVLTFREPADAERVLAQ-ADHELHG--AQLSLRP 80 (104)
T ss_dssp TEEEEEESSHHHHHHHHTC-SCCBSSS--SBCEEEE
T ss_pred CcEEEEEcChHHHHHHhcC-CcceecC--eEEEEEc
Confidence 4489999999999987653 2345655 4677753
No 225
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=31.73 E-value=21 Score=20.17 Aligned_cols=12 Identities=25% Similarity=0.276 Sum_probs=9.8
Q ss_pred CccceEEEEeCC
Q psy6355 7 FCRYLGFIRFDQ 18 (83)
Q Consensus 7 ~SrG~gFV~F~~ 18 (83)
..||||||.-.+
T Consensus 11 ~~kGfGFI~~~~ 22 (73)
T 3a0j_A 11 AEKGYGFIEREG 22 (73)
T ss_dssp TTTTEEEEECTT
T ss_pred CCCCEEEEecCC
Confidence 468999999765
No 226
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=31.55 E-value=47 Score=18.17 Aligned_cols=33 Identities=15% Similarity=0.268 Sum_probs=22.1
Q ss_pred eEEEEeCCHHHHHHHHHHhCCCCCCCCCcceEEEec
Q psy6355 11 LGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFA 46 (83)
Q Consensus 11 ~gFV~F~~~e~A~~AI~~LnG~~~~G~~~~l~V~fA 46 (83)
|.||.-.. +.++.+++.|++..+.| +++.|+.+
T Consensus 42 ~s~v~v~~-~~~~~~~~~l~~~~i~g--~~~~v~~~ 74 (76)
T 2g0c_A 42 ASYVEILN-GKGPHVLKVMKNTTVKG--KQLKVNKA 74 (76)
T ss_dssp CEEEEECT-TCHHHHHHHHTTCCC-----CCCEEEC
T ss_pred cEEEEECH-HHHHHHHHHhccccCcC--ceEEEEEC
Confidence 56666655 56888999999988866 55667655
No 227
>3i2z_B RNA chaperone, negative regulator of CSPA transcription; beta barrel, DNA binding protein/transcription, cytoplasm, gene regulation; 1.10A {Salmonella typhimurium} SCOP: b.40.4.5 PDB: 2l15_A 1mjc_A 3mef_A
Probab=30.63 E-value=28 Score=19.51 Aligned_cols=12 Identities=25% Similarity=0.393 Sum_probs=9.9
Q ss_pred CccceEEEEeCC
Q psy6355 7 FCRYLGFIRFDQ 18 (83)
Q Consensus 7 ~SrG~gFV~F~~ 18 (83)
..||||||.-.+
T Consensus 15 ~~kGfGFI~~~~ 26 (71)
T 3i2z_B 15 ESKGFGFITPED 26 (71)
T ss_dssp TTTTEEEEEETT
T ss_pred CCCCcEEEecCC
Confidence 468999999876
No 228
>3aqq_A Calcium-regulated heat stable protein 1; compact beta-barrel, cold shock domain, ssDNA binding, DNA B protein; 2.80A {Homo sapiens}
Probab=29.55 E-value=24 Score=22.99 Aligned_cols=12 Identities=25% Similarity=0.221 Sum_probs=10.1
Q ss_pred CccceEEEEeCC
Q psy6355 7 FCRYLGFIRFDQ 18 (83)
Q Consensus 7 ~SrG~gFV~F~~ 18 (83)
..||||||.-.+
T Consensus 72 ~~KGfGFI~~dd 83 (147)
T 3aqq_A 72 RSKGHGFITPAD 83 (147)
T ss_dssp TTTTEEEEEESS
T ss_pred CCCCeEEeccCC
Confidence 468999999876
No 229
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=29.23 E-value=28 Score=19.20 Aligned_cols=12 Identities=33% Similarity=0.379 Sum_probs=9.8
Q ss_pred CccceEEEEeCC
Q psy6355 7 FCRYLGFIRFDQ 18 (83)
Q Consensus 7 ~SrG~gFV~F~~ 18 (83)
..||||||.-.+
T Consensus 10 ~~kGfGFI~~~~ 21 (66)
T 1g6p_A 10 SKKGYGFITKDE 21 (66)
T ss_dssp TTTTEEEEEETT
T ss_pred CCCCEEEEecCC
Confidence 368999999775
No 230
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=29.14 E-value=44 Score=19.53 Aligned_cols=26 Identities=8% Similarity=0.089 Sum_probs=21.3
Q ss_pred ccceEEEEeCCHHHHHHHHHHhCCCC
Q psy6355 8 CRYLGFIRFDQRIEAERAIQELNGTI 33 (83)
Q Consensus 8 SrG~gFV~F~~~e~A~~AI~~LnG~~ 33 (83)
-+||=||.+...++...+|+.+.|-.
T Consensus 49 fPGYVfVe~~~~~~~~~~I~~t~gV~ 74 (92)
T 3lpe_A 49 LKGYVLVEAETKGDVEELIKGMPRVR 74 (92)
T ss_dssp STTEEEEEESSHHHHHHHHTTCTTEE
T ss_pred cCCEEEEEEecchhHHHHHHCCCCce
Confidence 47999999999998888887766543
No 231
>1x65_A UNR protein; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold, greek-KEY topology protein; NMR {Homo sapiens}
Probab=29.06 E-value=21 Score=21.25 Aligned_cols=11 Identities=27% Similarity=0.395 Sum_probs=9.3
Q ss_pred ccceEEEEeCC
Q psy6355 8 CRYLGFIRFDQ 18 (83)
Q Consensus 8 SrG~gFV~F~~ 18 (83)
.||||||.-.+
T Consensus 17 ~KGfGFI~~~~ 27 (89)
T 1x65_A 17 RDGFGFIKCVD 27 (89)
T ss_dssp CTTBCEEEESS
T ss_pred eCCcceeecCC
Confidence 38999999876
No 232
>2ytv_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=28.33 E-value=18 Score=20.97 Aligned_cols=11 Identities=27% Similarity=0.649 Sum_probs=9.3
Q ss_pred ccceEEEEeCC
Q psy6355 8 CRYLGFIRFDQ 18 (83)
Q Consensus 8 SrG~gFV~F~~ 18 (83)
.||||||.-.+
T Consensus 17 ~KGfGFI~~dd 27 (79)
T 2ytv_A 17 KDQFGFINYEV 27 (79)
T ss_dssp CSSEEEESCCC
T ss_pred cccceeEeCCC
Confidence 58999999875
No 233
>1wfq_A UNR protein; beta-barrel, translational regulation, RNA chaperone, RNA/DN binding, QB fold, greek-KEY topology, structur genomics; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=27.32 E-value=31 Score=20.39 Aligned_cols=10 Identities=30% Similarity=0.614 Sum_probs=8.7
Q ss_pred cceEEEEeCC
Q psy6355 9 RYLGFIRFDQ 18 (83)
Q Consensus 9 rG~gFV~F~~ 18 (83)
||||||.-.+
T Consensus 28 KGfGFI~~dd 37 (89)
T 1wfq_A 28 TSYGFIQCSE 37 (89)
T ss_dssp SSEEEEEETT
T ss_pred CCeeEEecCC
Confidence 8999999776
No 234
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=27.23 E-value=18 Score=22.46 Aligned_cols=20 Identities=15% Similarity=0.257 Sum_probs=18.1
Q ss_pred eEEEEeCCHHHHHHHHHHhC
Q psy6355 11 LGFIRFDQRIEAERAIQELN 30 (83)
Q Consensus 11 ~gFV~F~~~e~A~~AI~~Ln 30 (83)
-|||.|.+++.|..|++.++
T Consensus 41 sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 41 SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEEecCHHHHHHHHHhcc
Confidence 49999999999999999875
No 235
>2yty_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=26.40 E-value=29 Score=20.45 Aligned_cols=10 Identities=30% Similarity=0.551 Sum_probs=8.6
Q ss_pred cceEEEEeCC
Q psy6355 9 RYLGFIRFDQ 18 (83)
Q Consensus 9 rG~gFV~F~~ 18 (83)
||||||.-.+
T Consensus 28 kGfGFI~~dd 37 (88)
T 2yty_A 28 DNFGFIETAN 37 (88)
T ss_dssp SSEEEEECSS
T ss_pred CCccEEecCC
Confidence 7999999765
No 236
>2ytx_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=25.91 E-value=29 Score=20.74 Aligned_cols=11 Identities=27% Similarity=0.401 Sum_probs=9.0
Q ss_pred ccceEEEEeCC
Q psy6355 8 CRYLGFIRFDQ 18 (83)
Q Consensus 8 SrG~gFV~F~~ 18 (83)
.||||||.-.+
T Consensus 27 ~KGfGFI~~dd 37 (97)
T 2ytx_A 27 KEAFGFIERGD 37 (97)
T ss_dssp CSSEEEEECSS
T ss_pred eCCceEEecCC
Confidence 58999998765
No 237
>2lss_A Cold shock-like protein; CSD, CSP, oligonucleotide binding F fold, RNA binding protein, DNA binding protein; NMR {Rickettsia rickettsii}
Probab=26.38 E-value=21 Score=20.05 Aligned_cols=12 Identities=33% Similarity=0.578 Sum_probs=9.7
Q ss_pred CccceEEEEeCC
Q psy6355 7 FCRYLGFIRFDQ 18 (83)
Q Consensus 7 ~SrG~gFV~F~~ 18 (83)
..||||||.-.+
T Consensus 14 ~~kGfGFI~~~~ 25 (70)
T 2lss_A 14 STKNFGFIEQDN 25 (70)
Confidence 468999998766
No 238
>3bsu_A Ribonuclease H1, RNAse H1; RNAse H, RNA/DNA hybrid; HET: DNA 5IU; 2.10A {Homo sapiens}
Probab=20.01 E-value=1e+02 Score=16.35 Aligned_cols=19 Identities=21% Similarity=0.197 Sum_probs=13.4
Q ss_pred ceEEEEeCCHHHHHHHHHH
Q psy6355 10 YLGFIRFDQRIEAERAIQE 28 (83)
Q Consensus 10 G~gFV~F~~~e~A~~AI~~ 28 (83)
|--|-.|.+.++|++.+..
T Consensus 32 ga~yK~F~t~~eA~~~l~~ 50 (53)
T 3bsu_A 32 AARFKKFATEDEAWAFVRK 50 (53)
T ss_dssp TCEEEEESSHHHHHHHHHC
T ss_pred CCccCCCCCHHHHHHHHHh
Confidence 4467778888888877653
Done!