RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6355
(83 letters)
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 48.0 bits (114), Expect = 9e-10
Identities = 17/46 (36%), Positives = 29/46 (63%)
Query: 1 MKGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFA 46
T R + F+R+++R EA+ AI LN IP+G ++P++V+ A
Sbjct: 40 RDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 85
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 78
Score = 40.7 bits (95), Expect = 6e-07
Identities = 8/48 (16%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 1 MKGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANS 48
+ + F+++ +A +A+++ NG G P+ ++ S
Sbjct: 33 HYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGR--PMNIQLVTS 78
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 40.8 bits (95), Expect = 7e-07
Identities = 25/34 (73%), Positives = 28/34 (82%)
Query: 13 FIRFDQRIEAERAIQELNGTIPKGSNEPITVKFA 46
FIRFD+RIEAE AI+ LNG P G+ EPITVKFA
Sbjct: 52 FIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 85
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 90
Score = 40.0 bits (93), Expect = 1e-06
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 6 DFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSS 51
F+ F + +A A+ +NG G + V +A +PSS
Sbjct: 45 TSNDPYCFVEFYEHRDAAAALAAMNGRKILGK--EVKVNWATTPSS 88
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
octamer-binding protein, NonO {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 39.6 bits (92), Expect = 2e-06
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 4 FTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSS 51
F + GFIR + R AE A EL+ +G + V+FA +S
Sbjct: 39 FIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGK--QLRVRFACHSAS 84
>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 97
Score = 39.3 bits (91), Expect = 3e-06
Identities = 11/49 (22%), Positives = 20/49 (40%)
Query: 4 FTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSS 52
+I+++ A+ A ++ G G + + V FA S SS
Sbjct: 48 DHVKGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKSGPSS 96
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 38.5 bits (89), Expect = 6e-06
Identities = 9/52 (17%), Positives = 18/52 (34%), Gaps = 2/52 (3%)
Query: 1 MKGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSS 52
T + F + ++AI LNG + V+ A+ + +
Sbjct: 35 KDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDK--KLLVQRASVGAKN 84
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14
{Human (Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 38.1 bits (88), Expect = 1e-05
Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Query: 1 MKGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSSNK 54
G T R ++ ++ +A+ A L+G + V + N+ + K
Sbjct: 38 RVGNTPETRGTAYVVYEDIFDAKNACDHLSGFNVCNR--YLVVLYYNANRAFQK 89
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 37.7 bits (87), Expect = 2e-05
Identities = 9/54 (16%), Positives = 23/54 (42%)
Query: 1 MKGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSSNK 54
+ FT ++ +++ + A+ A L+G + + + F+ S + K
Sbjct: 37 IITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSLNVK 90
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 36.6 bits (84), Expect = 3e-05
Identities = 8/47 (17%), Positives = 15/47 (31%)
Query: 1 MKGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFAN 47
R F+ ++ A A ++L + I V +A
Sbjct: 37 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAE 83
>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 36.6 bits (84), Expect = 3e-05
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Query: 1 MKGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSSNK 54
T R GF+ F+ +A+ A+ +NG G I V A SS N+
Sbjct: 39 KDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGR--QIRVDQAG-KSSDNR 89
>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 99
Score = 36.4 bits (84), Expect = 4e-05
Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 2/47 (4%)
Query: 1 MKGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFAN 47
+ F + + F EA+ IQ L+G G IT + +
Sbjct: 49 LLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGR--QITAQAWD 93
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 91
Score = 36.2 bits (83), Expect = 5e-05
Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
Query: 9 RYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSSNKVIAPL 59
R F+ F + A A++ + G P+ +++A + S +IA +
Sbjct: 46 RGQAFVIFKEVSSATNALRSMQGFPFYDK--PMRIQYAKTDS---DIIAKM 91
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19,
Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 35.8 bits (82), Expect = 6e-05
Identities = 8/46 (17%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 5 TDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPS 50
GF+ + + +A++A+++L G G + V+ + +
Sbjct: 39 VLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGH--KLEVRISERAT 82
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 35.8 bits (82), Expect = 7e-05
Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 1 MKGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSS 52
T + GF+ F +A+ AI+ ++ G PI V A++ + +
Sbjct: 43 KDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGK--PIRVNKASAHNKN 92
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 35.4 bits (81), Expect = 1e-04
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 5 TDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSSN 53
R F+ F R +A A++ LNG + GS PI V A +
Sbjct: 40 VKKIRDYAFVHFSNREDAVEAMKALNGKVLDGS--PIEVTLAKPVDKDS 86
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 34.9 bits (80), Expect = 1e-04
Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 5 TDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFAN 47
T ++ F Q +AERA+ +N + KG P+ + ++
Sbjct: 38 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGK--PVRIMWSQ 78
>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8,
ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 35.5 bits (81), Expect = 1e-04
Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 4 FTDFCRYLGFIRFDQRIEAERAIQELNGT-IPKGSNEPITVKFA 46
+ F R+ E++RA LNG + + IT+
Sbjct: 51 LMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLN 94
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 35.2 bits (81), Expect = 1e-04
Identities = 7/43 (16%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Query: 12 GFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSSNK 54
F+++ A A+ +G + G + + A P +
Sbjct: 53 AFVQYVNERNARAAVAGEDGRMIAGQ--VLDINLAAEPKVNRS 93
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 34.8 bits (79), Expect = 2e-04
Identities = 10/50 (20%), Positives = 21/50 (42%), Gaps = 4/50 (8%)
Query: 5 TDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFA--NSPSSS 52
T + + ++ A+ A++ +G +GS + V A P +S
Sbjct: 54 TGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGS--KLKVSLARKKPPMNS 101
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 82
Score = 34.3 bits (78), Expect = 2e-04
Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Query: 1 MKGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPS 50
T GF+ + +AE+AI LNG + I V +A PS
Sbjct: 36 RDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTK--TIKVSYAR-PS 82
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 33.9 bits (77), Expect = 3e-04
Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Query: 1 MKGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFA 46
+ T+ R F+ F+ +A AI +N + G I V A
Sbjct: 39 LDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGR--TIRVNLA 82
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 33.9 bits (77), Expect = 4e-04
Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 1 MKGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSS 52
+ T+ + GF+ +D + A+ AIQ +NG + V+ S + S
Sbjct: 52 IDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMK--RLKVQLKRSKNDS 101
>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein
2, PTBP2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 33.7 bits (76), Expect = 4e-04
Identities = 7/48 (14%), Positives = 16/48 (33%)
Query: 1 MKGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANS 48
+ F+ A + + P N+PI ++++N
Sbjct: 36 TNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNH 83
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 96
Score = 33.9 bits (77), Expect = 4e-04
Identities = 7/48 (14%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Query: 5 TDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSS 52
+ + +I F +AE+ ++E G G +++ + +
Sbjct: 49 DGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGR--SVSLYYTGEKGGT 94
>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif,
single-stranded-interacting protein 1, RBMS1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 34.0 bits (77), Expect = 4e-04
Identities = 13/44 (29%), Positives = 17/44 (38%), Gaps = 6/44 (13%)
Query: 8 CRYLGFIRFDQRIEAERAIQELNGTIPKG------SNEPITVKF 45
R +GF R + + E I NG K EP+ KF
Sbjct: 58 SRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKF 101
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich
1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 33.5 bits (76), Expect = 5e-04
Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 2/48 (4%)
Query: 5 TDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSS 52
F+ F+ +AE A+ +G G + V+F S +
Sbjct: 49 RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGY--RLRVEFPRSGRGT 94
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19,
Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 33.4 bits (76), Expect = 5e-04
Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 2 KGFTDFCRYLGFIRFDQRIEAERAIQEL-NGTIPKGSNEPITVKFANS 48
T R GF+ F + +A++A L + T G + +++A+S
Sbjct: 44 MTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGR--RLVLEWADS 89
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 33.4 bits (76), Expect = 6e-04
Identities = 9/48 (18%), Positives = 16/48 (33%), Gaps = 2/48 (4%)
Query: 4 FTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSS 51
F+ + R +AE A++ +NGT I +
Sbjct: 44 MKKTACGFCFVEYYSRADAENAMRYINGTRLDDR--IIRTDWDAGFKE 89
>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein
L-like {Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 33.6 bits (76), Expect = 6e-04
Identities = 3/45 (6%), Positives = 12/45 (26%)
Query: 4 FTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANS 48
+ + F+ A+ + + + ++ S
Sbjct: 46 MMMPFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTS 90
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 99
Score = 33.5 bits (76), Expect = 6e-04
Identities = 9/54 (16%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 1 MKGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSSNK 54
+ T + F+ F A +A E++G + +G + V + +++
Sbjct: 42 IDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGR--MLHVLPSTIKKEASQ 93
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 33.1 bits (75), Expect = 7e-04
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 5 TDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSSN 53
+ GF+ F+ +A+RA ++L+GT+ +G I V A + +N
Sbjct: 47 ERGSKGFGFVTFENSADADRAREKLHGTVVEGR--KIEVNNATARVMTN 93
>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 104
Score = 33.2 bits (75), Expect = 7e-04
Identities = 11/58 (18%), Positives = 19/58 (32%), Gaps = 2/58 (3%)
Query: 8 CRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSSNKVIAPLAAYLTP 65
I F + A A L+ T G + + FA + + +AP +
Sbjct: 45 SFKRVRINFSNPLSAADARLRLHKTEFLGK--EMKLYFAQTLHIGSSHLAPPNPDKSG 100
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation
factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 32.7 bits (74), Expect = 0.001
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 4 FTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSS 52
T + FI F +R +A RAI ++G + V++A PS++
Sbjct: 45 TTGQSKGFAFISFHRREDAARAIAGVSGFGYDHL--ILNVEWAK-PSTN 90
>d1jmta_ d.58.7.3 (A:) U2AF35
(35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 32.3 bits (73), Expect = 0.001
Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 4/49 (8%)
Query: 1 MKGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSP 49
D +++F + +AE+A+ +LN G PI + SP
Sbjct: 60 CDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQ--PIHAEL--SP 104
>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 32.4 bits (73), Expect = 0.002
Identities = 11/39 (28%), Positives = 15/39 (38%), Gaps = 3/39 (7%)
Query: 12 GFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPS 50
GF+ R AERA ++ N I V A +
Sbjct: 55 GFVTMADRAAAERACKDPNPII---DGRKANVNLAYLGA 90
>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 31.9 bits (72), Expect = 0.002
Identities = 8/47 (17%), Positives = 17/47 (36%), Gaps = 2/47 (4%)
Query: 1 MKGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFAN 47
+ G F+ F + ++A+Q L G + K+ +
Sbjct: 50 VDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANR--VVVTKYCD 94
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 31.6 bits (71), Expect = 0.003
Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
Query: 1 MKGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSSNK 54
T + GF + + A A++ LNG G + V A S + +
Sbjct: 42 YDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGR--ALRVDNAASEKNKEE 93
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 88
Score = 31.2 bits (70), Expect = 0.003
Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 2/48 (4%)
Query: 1 MKGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANS 48
+ T F + + ++ +A A + LNG G I V +
Sbjct: 41 LDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQ--TIQVDWCFV 86
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 82
Score = 30.7 bits (69), Expect = 0.005
Identities = 10/40 (25%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 7 FCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFA 46
+ F+ F ++++RAI+ LNG + + V +A
Sbjct: 42 YSYGYAFVDFTSEMDSQRAIKVLNGITVRNK--RLKVSYA 79
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 30.9 bits (69), Expect = 0.005
Identities = 7/38 (18%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 13 FIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPS 50
F+ +A+ AIQ + +G + V+ + +
Sbjct: 44 FVTLLNGEQAQNAIQMFHQYSFRGK--DLIVQLQPTDA 79
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 30.7 bits (69), Expect = 0.006
Identities = 9/49 (18%), Positives = 17/49 (34%), Gaps = 4/49 (8%)
Query: 5 TDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSSN 53
T + GF+RF + + + + + K NS S +
Sbjct: 46 TGHSKGFGFVRFTEYETQVKVMSQRHMI----DGRWCDCKLPNSKQSQD 90
>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 30.9 bits (69), Expect = 0.007
Identities = 8/51 (15%), Positives = 17/51 (33%), Gaps = 2/51 (3%)
Query: 4 FTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSSNK 54
+ ++ +A+ A+ LNG G PI + + +
Sbjct: 35 ILFNKKENALVQMADGNQAQLAMSHLNGHKLHGK--PIRITLSKHQNVQLP 83
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif,
single-stranded-interacting protein 2, RBMS2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 30.1 bits (67), Expect = 0.007
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 4 FTDFCRYLGFIRFDQRIEAERAIQELNGTIPKG 36
T+ C+ GF+ FD A++A+ L + +
Sbjct: 35 TTNKCKGYGFVDFDSPSAAQKAVTALKASGVQA 67
>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma
cruzi [TaxId: 5693]}
Length = 139
Score = 30.6 bits (68), Expect = 0.009
Identities = 14/50 (28%), Positives = 19/50 (38%), Gaps = 2/50 (4%)
Query: 1 MKGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPS 50
T R GF++F A++AI LNG + V A S
Sbjct: 76 CDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNK--RLKVALAASGH 123
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 30.0 bits (67), Expect = 0.010
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 8 CRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANS 48
+ GF+ F+ + AERAI+++NG + + V S
Sbjct: 47 SKGYGFVHFETQEAAERAIEKMNGMLLNDR--KVFVGRFKS 85
>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear
ribonucleoproteins A2/B1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 103
Score = 30.0 bits (67), Expect = 0.014
Identities = 9/45 (20%), Positives = 15/45 (33%), Gaps = 3/45 (6%)
Query: 4 FTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANS 48
+ R GF+ F E + A+ G + K A +
Sbjct: 57 ASKRSRGFGFVTFSSMAEVDAAM-AARPHSIDGR--VVEPKRAVA 98
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 29.6 bits (66), Expect = 0.015
Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 8 CRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFA-NSPSSS 52
+ F+RF A AI +NGT +G + + SP +
Sbjct: 53 EKGYSFVRFSTHESAAHAIVSVNGTTIEGH--VVKCYWGKESPDMT 96
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 86
Score = 29.3 bits (65), Expect = 0.020
Identities = 7/46 (15%), Positives = 13/46 (28%), Gaps = 2/46 (4%)
Query: 1 MKGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFA 46
+ F+ R EA A+ +LN + +
Sbjct: 43 KYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSR--KVKLVLG 86
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 28.8 bits (64), Expect = 0.022
Identities = 7/43 (16%), Positives = 16/43 (37%), Gaps = 3/43 (6%)
Query: 4 FTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFA 46
T+ R FI F + ++ +++ + +K A
Sbjct: 36 KTNKRRGFCFITFKEEEPVKKIMEKKYHNV---GLSKCEIKVA 75
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 28.5 bits (63), Expect = 0.032
Identities = 9/48 (18%), Positives = 15/48 (31%), Gaps = 3/48 (6%)
Query: 1 MKGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANS 48
T R GF+ + E + A+ + + K A S
Sbjct: 40 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKV---DGRVVEPKRAVS 84
>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 83
Score = 28.7 bits (63), Expect = 0.035
Identities = 7/46 (15%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
Query: 1 MKGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFA 46
+ F+ F +++ A + L G ++ + + FA
Sbjct: 37 EVRLVPNRHDIAFVEFTTELQSNAAKEALQGFKITPTH-AMKITFA 81
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor
10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 28.1 bits (62), Expect = 0.046
Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Query: 1 MKGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITV 43
+ R F+ F+ +A+ A + NG G I V
Sbjct: 43 YDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGR--RIRV 83
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 77
Score = 28.0 bits (62), Expect = 0.050
Identities = 8/46 (17%), Positives = 14/46 (30%), Gaps = 3/46 (6%)
Query: 1 MKGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFA 46
T R GF+ F + ++ + + I K A
Sbjct: 34 RDPLTKRSRGFGFVTFMDQAGVDKVL-AQSRHELDSK--TIDPKVA 76
>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 111
Score = 28.4 bits (62), Expect = 0.052
Identities = 7/48 (14%), Positives = 17/48 (35%), Gaps = 2/48 (4%)
Query: 7 FCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANSPSSSNK 54
+ F + +EA +A + L + P+ +++A
Sbjct: 44 EGGITAIVEFLEPLEARKAFRHLAYSKFHHV--PLYLEWAPIGVFGAA 89
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 28.0 bits (61), Expect = 0.10
Identities = 8/41 (19%), Positives = 13/41 (31%), Gaps = 3/41 (7%)
Query: 8 CRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANS 48
R F+ FD ++ + G V+ A S
Sbjct: 138 KRGFAFVTFDDHDSVDKIV-IQKYHTVNGH--NCEVRKALS 175
>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E
{Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 26.9 bits (59), Expect = 0.13
Identities = 10/35 (28%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 12 GFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFA 46
F+ +++ A++A+ ELNGT + + V A
Sbjct: 42 AFVTYEKMESADQAVAELNGTQVESV--QLKVNIA 74
>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 26.7 bits (58), Expect = 0.20
Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 1 MKGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFANS 48
+ T R FI F + A +A+ +NG G + ++F +
Sbjct: 52 FRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGK--ILVIEFGKN 97
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 26.1 bits (57), Expect = 0.26
Identities = 9/42 (21%), Positives = 15/42 (35%), Gaps = 3/42 (7%)
Query: 5 TDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFA 46
T R GF+ F + ++ + + G I K A
Sbjct: 37 TGRSRGFGFVLFKESESVDKVM-DQKEHKLNGK--VIDPKRA 75
>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9
(SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 98
Score = 24.4 bits (52), Expect = 1.5
Identities = 5/47 (10%), Positives = 18/47 (38%), Gaps = 2/47 (4%)
Query: 1 MKGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSNEPITVKFAN 47
+ +G + + ++ + E A+++L+ T + +
Sbjct: 42 VCYADVQKDGMGMVEYLRKEDMEYALRKLDDTKFRS--HEGETSYIR 86
>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 89
Score = 23.6 bits (50), Expect = 2.2
Identities = 7/36 (19%), Positives = 15/36 (41%)
Query: 1 MKGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKG 36
+ ++ + + +A RAIQ +N + G
Sbjct: 48 SYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 83
>d3begb1 d.58.7.1 (B:121-207) Splicing factor,
arginine/serine-rich 1, SFRS1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 87
Score = 23.3 bits (49), Expect = 3.4
Identities = 10/55 (18%), Positives = 21/55 (38%), Gaps = 3/55 (5%)
Query: 1 MKGFTDFCRYLGFIRFDQRIEAERAIQELNGTIPKGSN---EPITVKFANSPSSS 52
+ + G + F ++ + A+++L+ T + I VK S S
Sbjct: 27 VCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGPRSPS 81
>d1e29a_ a.3.1.1 (A:) Photosystem II associated cytochrome c549
{Synechocystis sp., pcc 6803 [TaxId: 1143]}
Length = 135
Score = 23.3 bits (49), Expect = 4.1
Identities = 7/34 (20%), Positives = 13/34 (38%)
Query: 45 FANSPSSSNKVIAPLAAYLTPQAAAARRFGGPIH 78
+ + + I +A Y R+GG I+
Sbjct: 101 YPEMRNYTEDDIFDVAGYTLIAPKLDERWGGTIY 134
>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 81
Score = 22.6 bits (48), Expect = 4.8
Identities = 8/33 (24%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 12 GFIRFDQRIEAERAIQELNGTIPKGSNEPITVK 44
IR+ +++A +A+ + G + I VK
Sbjct: 42 MHIRYQSKLQARKALSKDGRIF--GESIMIGVK 72
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.137 0.411
Gapped
Lambda K H
0.267 0.0463 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 323,430
Number of extensions: 12057
Number of successful extensions: 91
Number of sequences better than 10.0: 1
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 65
Length of query: 83
Length of database: 2,407,596
Length adjustment: 49
Effective length of query: 34
Effective length of database: 1,734,826
Effective search space: 58984084
Effective search space used: 58984084
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.5 bits)