BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6358
(1945 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ETO|A Chain A, 2 Angstrom Xray Structure Of The Notch1 Negative Regulatory
Region (Nrr)
pdb|3ETO|B Chain B, 2 Angstrom Xray Structure Of The Notch1 Negative Regulatory
Region (Nrr)
Length = 242
Score = 164 bits (414), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 78/165 (47%), Positives = 105/165 (63%), Gaps = 2/165 (1%)
Query: 1459 AGNHRCDDECNTIACHFDGNDCSLGIN-PWINCTANINCWEVFMNGRCDEVCNNPQCLFD 1517
AGN C +CN AC +DG DCSL N PW NCT ++ CW+ F +G CD CN+ CLFD
Sbjct: 14 AGNKVCSLQCNNHACGWDGGDCSLNFNDPWKNCTQSLQCWKYFSDGHCDSQCNSAGCLFD 73
Query: 1518 GRDCEKNLQPCNPIYDAYCQKHYANGHCDYSCNNAECNWDGLDC-EREPPSLADGAISII 1576
G DC++ CNP+YD YC+ H+++GHCD CN+AEC WDGLDC E P LA G + ++
Sbjct: 74 GFDCQRAEGQCNPLYDQYCKDHFSDGHCDQGCNSAECEWDGLDCAEHVPERLAAGTLVVV 133
Query: 1577 VLMDMQMFKQNKVSFLRELGHELRATVRIKQEPTGHEMIYQHGGI 1621
VLM + + + FLREL L V K++ G +MI+ + G+
Sbjct: 134 VLMPPEQLRNSSFHFLRELSRVLHTNVVFKRDAHGQQMIFPYYGM 178
Score = 88.6 bits (218), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 43/87 (49%), Positives = 55/87 (63%), Gaps = 1/87 (1%)
Query: 737 EKCKQNNCRAKAGNHRCDDECNTIACHFDGNDCSLGIN-PWINCTANINCWEVFMNGRCD 795
E C+ C+ AGN C +CN AC +DG DCSL N PW NCT ++ CW+ F +G CD
Sbjct: 3 EACELPECQEDAGNKVCSLQCNNHACGWDGGDCSLNFNDPWKNCTQSLQCWKYFSDGHCD 62
Query: 796 EVCNNPQCLFDGRDCEKNLQPCNPIYD 822
CN+ CLFDG DC++ CNP+YD
Sbjct: 63 SQCNSAGCLFDGFDCQRAEGQCNPLYD 89
>pdb|3L95|X Chain X, Crystal Structure Of The Human Notch1 Negative Regulatory
Region (Nrr) Bound To The Fab Fragment Of An Antagonist
Antibody
pdb|3L95|Y Chain Y, Crystal Structure Of The Human Notch1 Negative Regulatory
Region (Nrr) Bound To The Fab Fragment Of An Antagonist
Antibody
Length = 244
Score = 164 bits (414), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 78/164 (47%), Positives = 104/164 (63%), Gaps = 2/164 (1%)
Query: 1459 AGNHRCDDECNTIACHFDGNDCSLGIN-PWINCTANINCWEVFMNGRCDEVCNNPQCLFD 1517
AGN C +CN AC +DG DCSL N PW NCT ++ CW+ F +G CD CN+ CLFD
Sbjct: 13 AGNKVCSLQCNNHACGWDGGDCSLNFNDPWKNCTQSLQCWKYFSDGHCDSQCNSAGCLFD 72
Query: 1518 GRDCEKNLQPCNPIYDAYCQKHYANGHCDYSCNNAECNWDGLDC-EREPPSLADGAISII 1576
G DC++ CNP+YD YC+ H+++GHCD CN+AEC WDGLDC E P LA G + ++
Sbjct: 73 GFDCQRAEGQCNPLYDQYCKDHFSDGHCDQGCNSAECEWDGLDCAEHVPERLAAGTLVVV 132
Query: 1577 VLMDMQMFKQNKVSFLRELGHELRATVRIKQEPTGHEMIYQHGG 1620
VLM + + + FLREL L V K++ G +MI+ + G
Sbjct: 133 VLMPPEQLRNSSFHFLRELSRVLHTNVVFKRDAHGQQMIFPYYG 176
Score = 87.4 bits (215), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 42/85 (49%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 739 CKQNNCRAKAGNHRCDDECNTIACHFDGNDCSLGIN-PWINCTANINCWEVFMNGRCDEV 797
C+ C+ AGN C +CN AC +DG DCSL N PW NCT ++ CW+ F +G CD
Sbjct: 4 CELPECQEDAGNKVCSLQCNNHACGWDGGDCSLNFNDPWKNCTQSLQCWKYFSDGHCDSQ 63
Query: 798 CNNPQCLFDGRDCEKNLQPCNPIYD 822
CN+ CLFDG DC++ CNP+YD
Sbjct: 64 CNSAGCLFDGFDCQRAEGQCNPLYD 88
>pdb|3I08|A Chain A, Crystal Structure Of The S1-Cleaved Notch1 Negative
Regulatory Region (Nrr)
pdb|3I08|C Chain C, Crystal Structure Of The S1-Cleaved Notch1 Negative
Regulatory Region (Nrr)
Length = 220
Score = 162 bits (410), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 78/164 (47%), Positives = 104/164 (63%), Gaps = 2/164 (1%)
Query: 1459 AGNHRCDDECNTIACHFDGNDCSLGIN-PWINCTANINCWEVFMNGRCDEVCNNPQCLFD 1517
AGN C +CN AC +DG DCSL N PW NCT ++ CW+ F +G CD CN+ CLFD
Sbjct: 14 AGNKVCSLQCNNHACGWDGGDCSLNFNDPWKNCTQSLQCWKYFSDGHCDSQCNSAGCLFD 73
Query: 1518 GRDCEKNLQPCNPIYDAYCQKHYANGHCDYSCNNAECNWDGLDC-EREPPSLADGAISII 1576
G DC++ CNP+YD YC+ H+++GHCD CN+AEC WDGLDC E P LA G + ++
Sbjct: 74 GFDCQRAEGQCNPLYDQYCKDHFSDGHCDQGCNSAECEWDGLDCAEHVPERLAAGTLVVV 133
Query: 1577 VLMDMQMFKQNKVSFLRELGHELRATVRIKQEPTGHEMIYQHGG 1620
VLM + + + FLREL L V K++ G +MI+ + G
Sbjct: 134 VLMPPEQLRNSSFHFLRELSRVLHTNVVFKRDAHGQQMIFPYYG 177
Score = 88.2 bits (217), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 43/87 (49%), Positives = 55/87 (63%), Gaps = 1/87 (1%)
Query: 737 EKCKQNNCRAKAGNHRCDDECNTIACHFDGNDCSLGIN-PWINCTANINCWEVFMNGRCD 795
E C+ C+ AGN C +CN AC +DG DCSL N PW NCT ++ CW+ F +G CD
Sbjct: 3 EACELPECQEDAGNKVCSLQCNNHACGWDGGDCSLNFNDPWKNCTQSLQCWKYFSDGHCD 62
Query: 796 EVCNNPQCLFDGRDCEKNLQPCNPIYD 822
CN+ CLFDG DC++ CNP+YD
Sbjct: 63 SQCNSAGCLFDGFDCQRAEGQCNPLYD 89
>pdb|2VJ3|A Chain A, Human Notch-1 Egfs 11-13
Length = 135
Score = 148 bits (374), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 67/112 (59%), Positives = 84/112 (75%)
Query: 1055 IAGSPCEHDGTCVNTPGSFACNCTQGFTGPRCETNVNECESHPCQNDGSCLDDPGTFRCV 1114
+ +PCEH G C+NT GSF C C QG+TGPRCE +VNEC S+PCQND +CLD G F+C+
Sbjct: 10 LGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCI 69
Query: 1115 CMPGFTGTQCETDIDECASNPCLNGGICNDLINTFKCACPIGFTGSHCQINI 1166
CMPG+ G CE + DECAS+PCL+ G C D IN F+C CP GFTG CQ+++
Sbjct: 70 CMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQVDL 121
Score = 120 bits (301), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 55/117 (47%), Positives = 81/117 (69%), Gaps = 2/117 (1%)
Query: 1241 LDECA--SNPCQFGGQCEDLINGYQCRCKPGTSGTNCEININECYSNPCRNGAKCVDGIN 1298
+DEC+ +NPC+ G+C + + ++C+C G +G CEI++NEC SNPC+N A C+D I
Sbjct: 5 VDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIG 64
Query: 1299 RYSCECLPGYTGLHCETNINECASNPCANGGVCVDLIDGFKCECPRGYYDARCLSDV 1355
+ C C+PGY G+HCE N +ECAS+PC + G C+D I+ F+CECP G+ C D+
Sbjct: 65 EFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQVDL 121
Score = 117 bits (293), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 60/116 (51%), Positives = 79/116 (68%), Gaps = 5/116 (4%)
Query: 151 IAGSPCEHDGTCVNTPGSFACNCTQGFTGPRCETNVNECESHPCQNDGSCLDDPGTFRCV 210
+ +PCEH G C+NT GSF C C QG+TGPRCE +VNEC S+PCQND +CLD G F+C+
Sbjct: 10 LGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCI 69
Query: 211 CMCEPGYTGQNCESKYVPCDPSPCQNGGVCRELDNLN-YECECQSGYRGKNCEENI 265
CM PGY G +CE C SPC + G C LD +N ++CEC +G+ G C+ ++
Sbjct: 70 CM--PGYEGVHCEVNTDECASSPCLHNGRC--LDKINEFQCECPTGFTGHLCQVDL 121
Score = 112 bits (279), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 53/119 (44%), Positives = 78/119 (65%), Gaps = 2/119 (1%)
Query: 1089 NVNECE--SHPCQNDGSCLDDPGTFRCVCMPGFTGTQCETDIDECASNPCLNGGICNDLI 1146
+V+EC ++PC++ G C++ G+F C C+ G+TG +CE D++EC SNPC N C D I
Sbjct: 4 DVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQI 63
Query: 1147 NTFKCACPIGFTGSHCQINIDDCVSSPCHNGGICKDSIAGYTCECLAGFTGMSCETNIN 1205
F+C C G+ G HC++N D+C SSPC + G C D I + CEC GFTG C+ +++
Sbjct: 64 GEFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQVDLH 122
Score = 110 bits (276), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 77/118 (65%), Gaps = 2/118 (1%)
Query: 1316 NINECA--SNPCANGGVCVDLIDGFKCECPRGYYDARCLSDVDECASDPCLNGGTCEDGL 1373
+++EC+ +NPC + G C++ + F+C+C +GY RC DV+EC S+PC N TC D +
Sbjct: 4 DVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQI 63
Query: 1374 NQFICHCKPGYGGKRCEFDIDECGSNPCQHGGICTDHLNGYTCECQIGYTGINCEINI 1431
+F C C PGY G CE + DEC S+PC H G C D +N + CEC G+TG C++++
Sbjct: 64 GEFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQVDL 121
Score = 110 bits (275), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 73/118 (61%), Gaps = 2/118 (1%)
Query: 1278 NINECY--SNPCRNGAKCVDGINRYSCECLPGYTGLHCETNINECASNPCANGGVCVDLI 1335
+++EC +NPC + KC++ + + C+CL GYTG CE ++NEC SNPC N C+D I
Sbjct: 4 DVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQI 63
Query: 1336 DGFKCECPRGYYDARCLSDVDECASDPCLNGGTCEDGLNQFICHCKPGYGGKRCEFDI 1393
F+C C GY C + DECAS PCL+ G C D +N+F C C G+ G C+ D+
Sbjct: 64 GEFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQVDL 121
Score = 108 bits (270), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 76/118 (64%), Gaps = 3/118 (2%)
Query: 1127 DIDECA--SNPCLNGGICNDLINTFKCACPIGFTGSHCQINIDDCVSSPCHNGGICKDSI 1184
D+DEC+ +NPC + G C + + +F+C C G+TG C+I++++CVS+PC N C D I
Sbjct: 4 DVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQI 63
Query: 1185 AGYTCECLAGFTGMSCETNINDCASNPC-HRGECIDGENSFTCACHPGFTGALCNTQL 1241
+ C C+ G+ G+ CE N ++CAS+PC H G C+D N F C C GFTG LC L
Sbjct: 64 GEFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQVDL 121
Score = 106 bits (265), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 83/150 (55%), Gaps = 31/150 (20%)
Query: 943 EDVDECQL-SSPCRNGATCHNTNGSYLCECAKGYEGRDCLINTDDCASFPCQNGGTCLDE 1001
+DVDEC L ++PC + C NT GS+ C+C +GY G C I+ ++C S PCQN TCLD+
Sbjct: 3 QDVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQ 62
Query: 1002 VGDYSCLCVDGFSGKHCEVDIDECSSNPCHNGATCNQFQMIFIFFTNQYSWFLIAGSPCE 1061
+G++ C+C+ G+ G HCEV+ DEC+S SPC
Sbjct: 63 IGEFQCICMPGYEGVHCEVNTDECAS------------------------------SPCL 92
Query: 1062 HDGTCVNTPGSFACNCTQGFTGPRCETNVN 1091
H+G C++ F C C GFTG C+ +++
Sbjct: 93 HNGRCLDKINEFQCECPTGFTGHLCQVDLH 122
Score = 103 bits (257), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 49/106 (46%), Positives = 67/106 (63%), Gaps = 2/106 (1%)
Query: 1353 SDVDECA--SDPCLNGGTCEDGLNQFICHCKPGYGGKRCEFDIDECGSNPCQHGGICTDH 1410
DVDEC+ ++PC + G C + L F C C GY G RCE D++EC SNPCQ+ C D
Sbjct: 3 QDVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQ 62
Query: 1411 LNGYTCECQIGYTGINCEINIDDCAFKPCRHGGTCIDLVNAYKCVC 1456
+ + C C GY G++CE+N D+CA PC H G C+D +N ++C C
Sbjct: 63 IGEFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCEC 108
Score = 103 bits (256), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 51/119 (42%), Positives = 76/119 (63%), Gaps = 3/119 (2%)
Query: 1203 NINDCA--SNPC-HRGECIDGENSFTCACHPGFTGALCNTQLDECASNPCQFGGQCEDLI 1259
++++C+ +NPC H G+CI+ SF C C G+TG C ++EC SNPCQ C D I
Sbjct: 4 DVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQI 63
Query: 1260 NGYQCRCKPGTSGTNCEININECYSNPCRNGAKCVDGINRYSCECLPGYTGLHCETNIN 1318
+QC C PG G +CE+N +EC S+PC + +C+D IN + CEC G+TG C+ +++
Sbjct: 64 GEFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQVDLH 122
Score = 96.3 bits (238), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/122 (43%), Positives = 74/122 (60%), Gaps = 5/122 (4%)
Query: 903 QKLDPCV--PNRCQHGARCTPSANFQDFACHCGVGWTGRYCNEDVDECQLSSPCRNGATC 960
Q +D C N C+H +C + F C C G+TG C DV+EC +S+PC+N ATC
Sbjct: 3 QDVDECSLGANPCEHAGKCINT--LGSFECQCLQGYTGPRCEIDVNEC-VSNPCQNDATC 59
Query: 961 HNTNGSYLCECAKGYEGRDCLINTDDCASFPCQNGGTCLDEVGDYSCLCVDGFSGKHCEV 1020
+ G + C C GYEG C +NTD+CAS PC + G CLD++ ++ C C GF+G C+V
Sbjct: 60 LDQIGEFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQV 119
Query: 1021 DI 1022
D+
Sbjct: 120 DL 121
Score = 91.7 bits (226), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 72/123 (58%), Gaps = 4/123 (3%)
Query: 301 QDVDECSIRPSVCHNGATCTNSVGGFSCICVNGWTGPDCSLNIDDCAGAACFNGATCIDR 360
QDVDECS+ + C + C N++G F C C+ G+TGP C +++++C C N ATC+D+
Sbjct: 3 QDVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQ 62
Query: 361 VGSFYCQCTPGKTGLLCHLE-DACTSNPCHADAICDTNPIINGSYTCSCASGYKGVNCSE 419
+G F C C PG G+ C + D C S+PC + C IN + C C +G+ G C
Sbjct: 63 IGEFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDK--IN-EFQCECPTGFTGHLCQV 119
Query: 420 DIN 422
D++
Sbjct: 120 DLH 122
Score = 85.5 bits (210), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/134 (38%), Positives = 71/134 (52%), Gaps = 19/134 (14%)
Query: 342 NIDDCAGAA--CFNGATCIDRVGSFYCQCTPGKTGLLCHLE-DACTSNPCHADAICDTNP 398
++D+C+ A C + CI+ +GSF CQC G TG C ++ + C SNPC DA C
Sbjct: 4 DVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQI 63
Query: 399 IINGSYTCSCASGYKGVNCSEDINECEQGINCEINIDDCAFKPCRHGGTCIDLVNAYKCV 458
G + C C GY+GV+C E+N D+CA PC H G C+D +N ++C
Sbjct: 64 ---GEFQCICMPGYEGVHC-------------EVNTDECASSPCLHNGRCLDKINEFQCE 107
Query: 459 CQVPYTGHDCHQKL 472
C +TGH C L
Sbjct: 108 CPTGFTGHLCQVDL 121
Score = 80.5 bits (197), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 70/113 (61%), Gaps = 5/113 (4%)
Query: 232 SPCQNGGVCRELDNL-NYECECQSGYRGKNCEENIDDCPGNLCQNGATCMDGINKYSCLC 290
+PC++ G C ++ L ++EC+C GY G CE ++++C N CQN ATC+D I ++ C+C
Sbjct: 13 NPCEHAGKC--INTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCIC 70
Query: 291 LATYTGDLCEQDVDECSIRPSVCHNGATCTNSVGGFSCICVNGWTGPDCSLNI 343
+ Y G CE + DEC+ P + HNG C + + F C C G+TG C +++
Sbjct: 71 MPGYEGVHCEVNTDECASSPCL-HNG-RCLDKINEFQCECPTGFTGHLCQVDL 121
Score = 72.0 bits (175), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 54/102 (52%), Gaps = 3/102 (2%)
Query: 18 SFWCSCPIGFSASLCEIPVANSCDSFPCMNGGTCTLKSLDRYTCTCAPGFTGSQCELQ-D 76
SF C C G++ CEI V N C S PC N TC L + + C C PG+ G CE+ D
Sbjct: 27 SFECQCLQGYTGPRCEIDV-NECVSNPCQNDATC-LDQIGEFQCICMPGYEGVHCEVNTD 84
Query: 77 HCASSPCRNGAVCTSLEDTYECDCAPGFVGQTCSEDIIECVD 118
CASSPC + C + ++C+C GF G C D+ +D
Sbjct: 85 ECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQVDLHHILD 126
Score = 71.6 bits (174), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 63/120 (52%), Gaps = 5/120 (4%)
Query: 866 NIDDCAF--KPCRHGGTCIDLVNAYKCVCQVPYTGHDCHQKLDPCVPNRCQHGARCTPSA 923
++D+C+ PC H G CI+ + +++C C YTG C ++ CV N CQ+ A C
Sbjct: 4 DVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQI 63
Query: 924 NFQDFACHCGVGWTGRYCNEDVDECQLSSPCRNGATCHNTNGSYLCECAKGYEGRDCLIN 983
+F C C G+ G +C + DEC SSPC + C + + CEC G+ G C ++
Sbjct: 64 G--EFQCICMPGYEGVHCEVNTDEC-ASSPCLHNGRCLDKINEFQCECPTGFTGHLCQVD 120
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 63/145 (43%), Gaps = 37/145 (25%)
Query: 79 ASSPCRNGAVCTSLEDTYECDCAPGFVGQTCSEDIIECVDDPCVHGECFNTHGSYTFQMI 138
++PC + C + ++EC C G+ G C D+ ECV +
Sbjct: 11 GANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSN------------------- 51
Query: 139 FIFFTNQYSWFLIAGSPCEHDGTCVNTPGSFACNCTQGFTGPRCETNVNECESHPCQNDG 198
PC++D TC++ G F C C G+ G CE N +EC S PC ++G
Sbjct: 52 ----------------PCQNDATCLDQIGEFQCICMPGYEGVHCEVNTDECASSPCLHNG 95
Query: 199 SCLDDPGTFRCVCMCEPGYTGQNCE 223
CLD F+ C C G+TG C+
Sbjct: 96 RCLDKINEFQ--CECPTGFTGHLCQ 118
Score = 68.6 bits (166), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 56/105 (53%), Gaps = 2/105 (1%)
Query: 601 NGGVCTALDGGHTCICPDNYSGRNCEYFGYDCDSNPCQNGGFCRSKEGGGYRCDCPPGAT 660
+ G C G C C Y+G CE +C SNPCQN C + G ++C C PG
Sbjct: 17 HAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQ-IGEFQCICMPGYE 75
Query: 661 GTHCELDSRNECYSNPCQHAGTCEDRIADYACYCLPMWNGKNCDL 705
G HCE+++ +EC S+PC H G C D+I ++ C C + G C +
Sbjct: 76 GVHCEVNT-DECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQV 119
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 62/145 (42%), Gaps = 37/145 (25%)
Query: 44 PCMNGGTCTLKSLDRYTCTCAPGFTGSQCELQ-DHCASSPCRNGAVCTSLEDTYECDCAP 102
PC + G C + +L + C C G+TG +CE+ + C S+PC+N A C ++C C P
Sbjct: 14 PCEHAGKC-INTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCICMP 72
Query: 103 GFVGQTCSEDIIECVDDPCVHGECFNTHGSYTFQMIFIFFTNQYSWFLIAGSPCEHDGTC 162
G+ G C + EC PC+ H+G C
Sbjct: 73 GYEGVHCEVNTDECASSPCL-----------------------------------HNGRC 97
Query: 163 VNTPGSFACNCTQGFTGPRCETNVN 187
++ F C C GFTG C+ +++
Sbjct: 98 LDKINEFQCECPTGFTGHLCQVDLH 122
Score = 61.6 bits (148), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Query: 634 SNPCQNGGFCRSKEGGGYRCDCPPGATGTHCELDSRNECYSNPCQHAGTCEDRIADYACY 693
+NPC++ G C + G + C C G TG CE+D NEC SNPCQ+ TC D+I ++ C
Sbjct: 12 ANPCEHAGKCINTLGS-FECQCLQGYTGPRCEIDV-NECVSNPCQNDATCLDQIGEFQCI 69
Query: 694 CLPMWNGKNCDL 705
C+P + G +C++
Sbjct: 70 CMPGYEGVHCEV 81
Score = 58.2 bits (139), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 865 INIDDCAFKPCRHGGTCIDLVNAYKCVCQVPYTGHDCHQKLDPCVPNRCQHGARCTPSAN 924
I++++C PC++ TC+D + ++C+C Y G C D C + C H RC N
Sbjct: 43 IDVNECVSNPCQNDATCLDQIGEFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKIN 102
Query: 925 FQDFACHCGVGWTGRYCNEDV 945
+F C C G+TG C D+
Sbjct: 103 --EFQCECPTGFTGHLCQVDL 121
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 13/74 (17%)
Query: 1617 QHGGICTDHLNGYTCECQIGYTGGYISLNMSTSTLGIICEINVPDCLPGACHNNGTCVDK 1676
+H G C + L + C+C GYTG CEI+V +C+ C N+ TC+D+
Sbjct: 16 EHAGKCINTLGSFECQCLQGYTGPR-------------CEIDVNECVSNPCQNDATCLDQ 62
Query: 1677 VGGFECRCPPGFVG 1690
+G F+C C PG+ G
Sbjct: 63 IGEFQCICMPGYEG 76
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 54/142 (38%), Gaps = 62/142 (43%)
Query: 418 SEDINECEQGINCEINIDDCAFKPCRHGGTCIDLVNAYKCVCQVPYTGHDCHQKLDPCVP 477
++D++EC G N PC H G CI+ + +++C C YT
Sbjct: 2 AQDVDECSLGAN-----------PCEHAGKCINTLGSFECQCLQGYT------------- 37
Query: 478 NSACVRCLTPGMIVIRSWILVYRTERMVIDFGMKHIGSRCEGDINECLSNPCSSHGTLDC 537
G RCE D+NEC+SNPC + T C
Sbjct: 38 ------------------------------------GPRCEIDVNECVSNPCQNDAT--C 59
Query: 538 VQLVNNYHCNCRPGYMGRHCEV 559
+ + + C C PGY G HCEV
Sbjct: 60 LDQIGEFQCICMPGYEGVHCEV 81
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 61/150 (40%), Gaps = 35/150 (23%)
Query: 520 DINECL--SNPCSSHGTLDCVQLVNNYHCNCRPGYMGRHCEVKDLAVKVTSMNASPTLAP 577
D++EC +NPC G C+ + ++ C C GY G CE+ V ++P
Sbjct: 4 DVDECSLGANPCEHAGK--CINTLGSFECQCLQGYTGPRCEID-----VNECVSNPC--- 53
Query: 578 LTVLWIAYNWSXXXXXXXXXXXWNGGVCTALDGGHTCICPDNYSGRNCEYFGYDCDSNPC 637
N C G CIC Y G +CE +C S+PC
Sbjct: 54 ----------------------QNDATCLDQIGEFQCICMPGYEGVHCEVNTDECASSPC 91
Query: 638 QNGGFCRSKEGGGYRCDCPPGATGTHCELD 667
+ G C K ++C+CP G TG C++D
Sbjct: 92 LHNGRCLDK-INEFQCECPTGFTGHLCQVD 120
Score = 32.3 bits (72), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 10/56 (17%)
Query: 1783 LRNNSGPRRQDDLS--LENTERN--------GSYLCECAKGYEGRDCLINTDDCAS 1828
L+ +GPR + D++ + N +N G + C C GYEG C +NTD+CAS
Sbjct: 33 LQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCICMPGYEGVHCEVNTDECAS 88
Score = 32.0 bits (71), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 1658 NVPDCLPGA--CHNNGTCVDKVGGFECRCPPGFVGSR--WTDAECFSN 1701
+V +C GA C + G C++ +G FEC+C G+ G R EC SN
Sbjct: 4 DVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSN 51
>pdb|2OO4|A Chain A, Structure Of Lnr-hd (negative Regulatory Region) From Human
Notch 2
pdb|2OO4|B Chain B, Structure Of Lnr-hd (negative Regulatory Region) From Human
Notch 2
Length = 234
Score = 148 bits (373), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 74/165 (44%), Positives = 107/165 (64%), Gaps = 5/165 (3%)
Query: 1458 KAGNHRCDDECNTIACHFDGNDCSLGI-NPWINCTANINCWEVFMNGRCDEVCNNPQCLF 1516
KA + CD+ CN+ AC +DG DCSL + NPW NC++ + CW+ ++N +CDE+CN +CLF
Sbjct: 12 KARDGVCDEACNSHACQWDGGDCSLTMENPWANCSSPLPCWD-YINNQCDELCNTVECLF 70
Query: 1517 DGRDCEKNLQPCNPIYDAYCQKHYANGHCDYSCNNAECNWDGLDCER-EPPSLADGAISI 1575
D +C+ N + C YD YC H+ + HC+ CN+ EC WDGLDC +P +LA+G + I
Sbjct: 71 DNFECQGNSKTCK--YDKYCADHFKDNHCNQGCNSEECGWDGLDCAADQPENLAEGTLVI 128
Query: 1576 IVLMDMQMFKQNKVSFLRELGHELRATVRIKQEPTGHEMIYQHGG 1620
+VLM + Q+ SFLR LG L +RIK++ G M+Y + G
Sbjct: 129 VVLMPPEQLLQDARSFLRALGTLLHTNLRIKRDSQGELMVYPYYG 173
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 53/81 (65%), Gaps = 2/81 (2%)
Query: 739 CKQNNCRAKAGNHRCDDECNTIACHFDGNDCSLGI-NPWINCTANINCWEVFMNGRCDEV 797
C C KA + CD+ CN+ AC +DG DCSL + NPW NC++ + CW+ ++N +CDE+
Sbjct: 4 CLSQYCADKARDGVCDEACNSHACQWDGGDCSLTMENPWANCSSPLPCWD-YINNQCDEL 62
Query: 798 CNNPQCLFDGRDCEKNLQPCN 818
CN +CLFD +C+ N + C
Sbjct: 63 CNTVECLFDNFECQGNSKTCK 83
>pdb|1TOZ|A Chain A, Nmr Structure Of The Human Notch-1 Ligand Binding Region
Length = 116
Score = 144 bits (363), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 67/109 (61%), Positives = 81/109 (74%)
Query: 1055 IAGSPCEHDGTCVNTPGSFACNCTQGFTGPRCETNVNECESHPCQNDGSCLDDPGTFRCV 1114
+ +PCEH G C+NT GSF C C QG+TGPRCE +VNEC S+PCQND +CLD G F+C+
Sbjct: 8 LGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCI 67
Query: 1115 CMPGFTGTQCETDIDECASNPCLNGGICNDLINTFKCACPIGFTGSHCQ 1163
CMPG+ G CE + DECAS+PCL+ G C D IN F+C CP GFTG CQ
Sbjct: 68 CMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQ 116
Score = 117 bits (293), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 54/113 (47%), Positives = 79/113 (69%), Gaps = 2/113 (1%)
Query: 1241 LDECA--SNPCQFGGQCEDLINGYQCRCKPGTSGTNCEININECYSNPCRNGAKCVDGIN 1298
+DEC+ +NPC+ G+C + + ++C+C G +G CEI++NEC SNPC+N A C+D I
Sbjct: 3 VDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIG 62
Query: 1299 RYSCECLPGYTGLHCETNINECASNPCANGGVCVDLIDGFKCECPRGYYDARC 1351
+ C C+PGY G+HCE N +ECAS+PC + G C+D I+ F+CECP G+ C
Sbjct: 63 EFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTGHLC 115
Score = 115 bits (287), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 60/113 (53%), Positives = 77/113 (68%), Gaps = 5/113 (4%)
Query: 151 IAGSPCEHDGTCVNTPGSFACNCTQGFTGPRCETNVNECESHPCQNDGSCLDDPGTFRCV 210
+ +PCEH G C+NT GSF C C QG+TGPRCE +VNEC S+PCQND +CLD G F+C+
Sbjct: 8 LGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCI 67
Query: 211 CMCEPGYTGQNCESKYVPCDPSPCQNGGVCRELDNLN-YECECQSGYRGKNCE 262
CM PGY G +CE C SPC + G C LD +N ++CEC +G+ G C+
Sbjct: 68 CM--PGYEGVHCEVNTDECASSPCLHNGRC--LDKINEFQCECPTGFTGHLCQ 116
Score = 108 bits (271), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/115 (46%), Positives = 75/115 (65%), Gaps = 2/115 (1%)
Query: 1089 NVNECE--SHPCQNDGSCLDDPGTFRCVCMPGFTGTQCETDIDECASNPCLNGGICNDLI 1146
+V+EC ++PC++ G C++ G+F C C+ G+TG +CE D++EC SNPC N C D I
Sbjct: 2 DVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQI 61
Query: 1147 NTFKCACPIGFTGSHCQINIDDCVSSPCHNGGICKDSIAGYTCECLAGFTGMSCE 1201
F+C C G+ G HC++N D+C SSPC + G C D I + CEC GFTG C+
Sbjct: 62 GEFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQ 116
Score = 107 bits (266), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 52/115 (45%), Positives = 74/115 (64%), Gaps = 2/115 (1%)
Query: 1316 NINECA--SNPCANGGVCVDLIDGFKCECPRGYYDARCLSDVDECASDPCLNGGTCEDGL 1373
+++EC+ +NPC + G C++ + F+C+C +GY RC DV+EC S+PC N TC D +
Sbjct: 2 DVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQI 61
Query: 1374 NQFICHCKPGYGGKRCEFDIDECGSNPCQHGGICTDHLNGYTCECQIGYTGINCE 1428
+F C C PGY G CE + DEC S+PC H G C D +N + CEC G+TG C+
Sbjct: 62 GEFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQ 116
Score = 105 bits (263), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/115 (44%), Positives = 71/115 (61%), Gaps = 2/115 (1%)
Query: 1278 NINECY--SNPCRNGAKCVDGINRYSCECLPGYTGLHCETNINECASNPCANGGVCVDLI 1335
+++EC +NPC + KC++ + + C+CL GYTG CE ++NEC SNPC N C+D I
Sbjct: 2 DVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQI 61
Query: 1336 DGFKCECPRGYYDARCLSDVDECASDPCLNGGTCEDGLNQFICHCKPGYGGKRCE 1390
F+C C GY C + DECAS PCL+ G C D +N+F C C G+ G C+
Sbjct: 62 GEFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQ 116
Score = 105 bits (263), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/115 (45%), Positives = 75/115 (65%), Gaps = 3/115 (2%)
Query: 1127 DIDECA--SNPCLNGGICNDLINTFKCACPIGFTGSHCQINIDDCVSSPCHNGGICKDSI 1184
D+DEC+ +NPC + G C + + +F+C C G+TG C+I++++CVS+PC N C D I
Sbjct: 2 DVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQI 61
Query: 1185 AGYTCECLAGFTGMSCETNINDCASNPC-HRGECIDGENSFTCACHPGFTGALCN 1238
+ C C+ G+ G+ CE N ++CAS+PC H G C+D N F C C GFTG LC
Sbjct: 62 GEFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQ 116
Score = 103 bits (257), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 57/146 (39%), Positives = 80/146 (54%), Gaps = 31/146 (21%)
Query: 943 EDVDECQL-SSPCRNGATCHNTNGSYLCECAKGYEGRDCLINTDDCASFPCQNGGTCLDE 1001
+DVDEC L ++PC + C NT GS+ C+C +GY G C I+ ++C S PCQN TCLD+
Sbjct: 1 QDVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQ 60
Query: 1002 VGDYSCLCVDGFSGKHCEVDIDECSSNPCHNGATCNQFQMIFIFFTNQYSWFLIAGSPCE 1061
+G++ C+C+ G+ G HCEV+ DEC+S SPC
Sbjct: 61 IGEFQCICMPGYEGVHCEVNTDECAS------------------------------SPCL 90
Query: 1062 HDGTCVNTPGSFACNCTQGFTGPRCE 1087
H+G C++ F C C GFTG C+
Sbjct: 91 HNGRCLDKINEFQCECPTGFTGHLCQ 116
Score = 102 bits (255), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 49/106 (46%), Positives = 67/106 (63%), Gaps = 2/106 (1%)
Query: 1353 SDVDECA--SDPCLNGGTCEDGLNQFICHCKPGYGGKRCEFDIDECGSNPCQHGGICTDH 1410
DVDEC+ ++PC + G C + L F C C GY G RCE D++EC SNPCQ+ C D
Sbjct: 1 QDVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQ 60
Query: 1411 LNGYTCECQIGYTGINCEINIDDCAFKPCRHGGTCIDLVNAYKCVC 1456
+ + C C GY G++CE+N D+CA PC H G C+D +N ++C C
Sbjct: 61 IGEFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCEC 106
Score = 100 bits (248), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/115 (44%), Positives = 73/115 (63%), Gaps = 3/115 (2%)
Query: 1203 NINDCA--SNPC-HRGECIDGENSFTCACHPGFTGALCNTQLDECASNPCQFGGQCEDLI 1259
++++C+ +NPC H G+CI+ SF C C G+TG C ++EC SNPCQ C D I
Sbjct: 2 DVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQI 61
Query: 1260 NGYQCRCKPGTSGTNCEININECYSNPCRNGAKCVDGINRYSCECLPGYTGLHCE 1314
+QC C PG G +CE+N +EC S+PC + +C+D IN + CEC G+TG C+
Sbjct: 62 GEFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQ 116
Score = 91.3 bits (225), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 51/119 (42%), Positives = 71/119 (59%), Gaps = 5/119 (4%)
Query: 903 QKLDPCV--PNRCQHGARCTPSANFQDFACHCGVGWTGRYCNEDVDECQLSSPCRNGATC 960
Q +D C N C+H +C + F C C G+TG C DV+EC +S+PC+N ATC
Sbjct: 1 QDVDECSLGANPCEHAGKCINT--LGSFECQCLQGYTGPRCEIDVNEC-VSNPCQNDATC 57
Query: 961 HNTNGSYLCECAKGYEGRDCLINTDDCASFPCQNGGTCLDEVGDYSCLCVDGFSGKHCE 1019
+ G + C C GYEG C +NTD+CAS PC + G CLD++ ++ C C GF+G C+
Sbjct: 58 LDQIGEFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQ 116
Score = 89.0 bits (219), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 69/119 (57%), Gaps = 4/119 (3%)
Query: 301 QDVDECSIRPSVCHNGATCTNSVGGFSCICVNGWTGPDCSLNIDDCAGAACFNGATCIDR 360
QDVDECS+ + C + C N++G F C C+ G+TGP C +++++C C N ATC+D+
Sbjct: 1 QDVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQ 60
Query: 361 VGSFYCQCTPGKTGLLCHLE-DACTSNPCHADAICDTNPIINGSYTCSCASGYKGVNCS 418
+G F C C PG G+ C + D C S+PC + C IN + C C +G+ G C
Sbjct: 61 IGEFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDK--IN-EFQCECPTGFTGHLCQ 116
Score = 84.0 bits (206), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 70/131 (53%), Gaps = 19/131 (14%)
Query: 342 NIDDCAGAA--CFNGATCIDRVGSFYCQCTPGKTGLLCHLE-DACTSNPCHADAICDTNP 398
++D+C+ A C + CI+ +GSF CQC G TG C ++ + C SNPC DA C
Sbjct: 2 DVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQI 61
Query: 399 IINGSYTCSCASGYKGVNCSEDINECEQGINCEINIDDCAFKPCRHGGTCIDLVNAYKCV 458
G + C C GY+GV+C E+N D+CA PC H G C+D +N ++C
Sbjct: 62 ---GEFQCICMPGYEGVHC-------------EVNTDECASSPCLHNGRCLDKINEFQCE 105
Query: 459 CQVPYTGHDCH 469
C +TGH C
Sbjct: 106 CPTGFTGHLCQ 116
Score = 79.0 bits (193), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 69/119 (57%), Gaps = 7/119 (5%)
Query: 185 NVNECE--SHPCQNDGSCLDDPGTFRCVCMCEPGYTGQNCESKYVPCDPSPCQNGGVCRE 242
+V+EC ++PC++ G C++ G+F C C+ GYTG CE C +PCQN C
Sbjct: 2 DVDECSLGANPCEHAGKCINTLGSFECQCL--QGYTGPRCEIDVNECVSNPCQNDATC-- 57
Query: 243 LDNL-NYECECQSGYRGKNCEENIDDCPGNLCQNGATCMDGINKYSCLCLATYTGDLCE 300
LD + ++C C GY G +CE N D+C + C + C+D IN++ C C +TG LC+
Sbjct: 58 LDQIGEFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQ 116
Score = 77.4 bits (189), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 67/110 (60%), Gaps = 5/110 (4%)
Query: 232 SPCQNGGVCRELDNL-NYECECQSGYRGKNCEENIDDCPGNLCQNGATCMDGINKYSCLC 290
+PC++ G C ++ L ++EC+C GY G CE ++++C N CQN ATC+D I ++ C+C
Sbjct: 11 NPCEHAGKC--INTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCIC 68
Query: 291 LATYTGDLCEQDVDECSIRPSVCHNGATCTNSVGGFSCICVNGWTGPDCS 340
+ Y G CE + DEC+ P + HNG C + + F C C G+TG C
Sbjct: 69 MPGYEGVHCEVNTDECASSPCL-HNG-RCLDKINEFQCECPTGFTGHLCQ 116
Score = 70.9 bits (172), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 61/117 (52%), Gaps = 5/117 (4%)
Query: 866 NIDDCAF--KPCRHGGTCIDLVNAYKCVCQVPYTGHDCHQKLDPCVPNRCQHGARCTPSA 923
++D+C+ PC H G CI+ + +++C C YTG C ++ CV N CQ+ A C
Sbjct: 2 DVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQI 61
Query: 924 NFQDFACHCGVGWTGRYCNEDVDECQLSSPCRNGATCHNTNGSYLCECAKGYEGRDC 980
+F C C G+ G +C + DEC SSPC + C + + CEC G+ G C
Sbjct: 62 G--EFQCICMPGYEGVHCEVNTDEC-ASSPCLHNGRCLDKINEFQCECPTGFTGHLC 115
Score = 68.6 bits (166), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 63/145 (43%), Gaps = 37/145 (25%)
Query: 79 ASSPCRNGAVCTSLEDTYECDCAPGFVGQTCSEDIIECVDDPCVHGECFNTHGSYTFQMI 138
++PC + C + ++EC C G+ G C D+ ECV +
Sbjct: 9 GANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSN------------------- 49
Query: 139 FIFFTNQYSWFLIAGSPCEHDGTCVNTPGSFACNCTQGFTGPRCETNVNECESHPCQNDG 198
PC++D TC++ G F C C G+ G CE N +EC S PC ++G
Sbjct: 50 ----------------PCQNDATCLDQIGEFQCICMPGYEGVHCEVNTDECASSPCLHNG 93
Query: 199 SCLDDPGTFRCVCMCEPGYTGQNCE 223
CLD F+ C C G+TG C+
Sbjct: 94 RCLDKINEFQ--CECPTGFTGHLCQ 116
Score = 67.8 bits (164), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 50/94 (53%), Gaps = 3/94 (3%)
Query: 18 SFWCSCPIGFSASLCEIPVANSCDSFPCMNGGTCTLKSLDRYTCTCAPGFTGSQCELQ-D 76
SF C C G++ CEI V N C S PC N TC L + + C C PG+ G CE+ D
Sbjct: 25 SFECQCLQGYTGPRCEIDV-NECVSNPCQNDATC-LDQIGEFQCICMPGYEGVHCEVNTD 82
Query: 77 HCASSPCRNGAVCTSLEDTYECDCAPGFVGQTCS 110
CASSPC + C + ++C+C GF G C
Sbjct: 83 ECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQ 116
Score = 67.4 bits (163), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 55/103 (53%), Gaps = 2/103 (1%)
Query: 601 NGGVCTALDGGHTCICPDNYSGRNCEYFGYDCDSNPCQNGGFCRSKEGGGYRCDCPPGAT 660
+ G C G C C Y+G CE +C SNPCQN C + G ++C C PG
Sbjct: 15 HAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQI-GEFQCICMPGYE 73
Query: 661 GTHCELDSRNECYSNPCQHAGTCEDRIADYACYCLPMWNGKNC 703
G HCE+++ +EC S+PC H G C D+I ++ C C + G C
Sbjct: 74 GVHCEVNT-DECASSPCLHNGRCLDKINEFQCECPTGFTGHLC 115
Score = 61.2 bits (147), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Query: 634 SNPCQNGGFCRSKEGGGYRCDCPPGATGTHCELDSRNECYSNPCQHAGTCEDRIADYACY 693
+NPC++ G C + G + C C G TG CE+D NEC SNPCQ+ TC D+I ++ C
Sbjct: 10 ANPCEHAGKCINTLGS-FECQCLQGYTGPRCEIDV-NECVSNPCQNDATCLDQIGEFQCI 67
Query: 694 CLPMWNGKNCDL 705
C+P + G +C++
Sbjct: 68 CMPGYEGVHCEV 79
Score = 60.8 bits (146), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 59/141 (41%), Gaps = 37/141 (26%)
Query: 44 PCMNGGTCTLKSLDRYTCTCAPGFTGSQCELQ-DHCASSPCRNGAVCTSLEDTYECDCAP 102
PC + G C + +L + C C G+TG +CE+ + C S+PC+N A C ++C C P
Sbjct: 12 PCEHAGKC-INTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCICMP 70
Query: 103 GFVGQTCSEDIIECVDDPCVHGECFNTHGSYTFQMIFIFFTNQYSWFLIAGSPCEHDGTC 162
G+ G C + EC PC+ H+G C
Sbjct: 71 GYEGVHCEVNTDECASSPCL-----------------------------------HNGRC 95
Query: 163 VNTPGSFACNCTQGFTGPRCE 183
++ F C C GFTG C+
Sbjct: 96 LDKINEFQCECPTGFTGHLCQ 116
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 865 INIDDCAFKPCRHGGTCIDLVNAYKCVCQVPYTGHDCHQKLDPCVPNRCQHGARCTPSAN 924
I++++C PC++ TC+D + ++C+C Y G C D C + C H RC N
Sbjct: 41 IDVNECVSNPCQNDATCLDQIGEFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKIN 100
Query: 925 FQDFACHCGVGWTGRYCN 942
+F C C G+TG C
Sbjct: 101 --EFQCECPTGFTGHLCQ 116
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 13/74 (17%)
Query: 1617 QHGGICTDHLNGYTCECQIGYTGGYISLNMSTSTLGIICEINVPDCLPGACHNNGTCVDK 1676
+H G C + L + C+C GYTG CEI+V +C+ C N+ TC+D+
Sbjct: 14 EHAGKCINTLGSFECQCLQGYTGPR-------------CEIDVNECVSNPCQNDATCLDQ 60
Query: 1677 VGGFECRCPPGFVG 1690
+G F+C C PG+ G
Sbjct: 61 IGEFQCICMPGYEG 74
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 53/141 (37%), Gaps = 62/141 (43%)
Query: 419 EDINECEQGINCEINIDDCAFKPCRHGGTCIDLVNAYKCVCQVPYTGHDCHQKLDPCVPN 478
+D++EC G N PC H G CI+ + +++C C YT
Sbjct: 1 QDVDECSLGAN-----------PCEHAGKCINTLGSFECQCLQGYT-------------- 35
Query: 479 SACVRCLTPGMIVIRSWILVYRTERMVIDFGMKHIGSRCEGDINECLSNPCSSHGTLDCV 538
G RCE D+NEC+SNPC + T C+
Sbjct: 36 -----------------------------------GPRCEIDVNECVSNPCQNDAT--CL 58
Query: 539 QLVNNYHCNCRPGYMGRHCEV 559
+ + C C PGY G HCEV
Sbjct: 59 DQIGEFQCICMPGYEGVHCEV 79
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 59/148 (39%), Gaps = 35/148 (23%)
Query: 520 DINECL--SNPCSSHGTLDCVQLVNNYHCNCRPGYMGRHCEVKDLAVKVTSMNASPTLAP 577
D++EC +NPC G C+ + ++ C C GY G CE+ V ++P
Sbjct: 2 DVDECSLGANPCEHAGK--CINTLGSFECQCLQGYTGPRCEID-----VNECVSNPC--- 51
Query: 578 LTVLWIAYNWSXXXXXXXXXXXWNGGVCTALDGGHTCICPDNYSGRNCEYFGYDCDSNPC 637
N C G CIC Y G +CE +C S+PC
Sbjct: 52 ----------------------QNDATCLDQIGEFQCICMPGYEGVHCEVNTDECASSPC 89
Query: 638 QNGGFCRSKEGGGYRCDCPPGATGTHCE 665
+ G C K ++C+CP G TG C+
Sbjct: 90 LHNGRCLDKINE-FQCECPTGFTGHLCQ 116
Score = 37.7 bits (86), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Query: 1 CQNGGTCNVRQSPSYSPSFWCSCPIGFSASLCEIPVANSCDSFPCMNGGTCTLKSLDRYT 60
CQN TC + F C C G+ CE+ + C S PC++ G C L ++ +
Sbjct: 51 CQNDATCLDQIG-----EFQCICMPGYEGVHCEVNT-DECASSPCLHNGRC-LDKINEFQ 103
Query: 61 CTCAPGFTGSQCE 73
C C GFTG C+
Sbjct: 104 CECPTGFTGHLCQ 116
Score = 32.3 bits (72), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 10/56 (17%)
Query: 1783 LRNNSGPRRQDDLS--LENTERN--------GSYLCECAKGYEGRDCLINTDDCAS 1828
L+ +GPR + D++ + N +N G + C C GYEG C +NTD+CAS
Sbjct: 31 LQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCICMPGYEGVHCEVNTDECAS 86
Score = 31.6 bits (70), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 1658 NVPDCLPGA--CHNNGTCVDKVGGFECRCPPGFVGSR--WTDAECFSN 1701
+V +C GA C + G C++ +G FEC+C G+ G R EC SN
Sbjct: 2 DVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSN 49
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 131 bits (329), Expect = 5e-30, Method: Composition-based stats.
Identities = 67/103 (65%), Positives = 67/103 (65%), Gaps = 15/103 (14%)
Query: 1830 LINADADINVPDNSGKTALHWXXXXXXXXXXXXLLSHGVN---------------PREGS 1874
LI ADADIN DNSGKTALHW LL H N REGS
Sbjct: 137 LITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGS 196
Query: 1875 YGACKALLDNFANREITDHMDRLPRDVASERLHHDIVRLLDEH 1917
Y A KALLDNFANREITDHMDRLPRDVASERLHHDIVRLLDEH
Sbjct: 197 YEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLLDEH 239
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 115 bits (287), Expect = 3e-25, Method: Composition-based stats.
Identities = 58/111 (52%), Positives = 70/111 (63%), Gaps = 16/111 (14%)
Query: 1830 LINADADINVPDNSGKTALHWXXXXXXXXXXXXLLSHGVN---------------PREGS 1874
LIN+ AD+N D+ GK+ALHW LL +G N REGS
Sbjct: 111 LINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGS 170
Query: 1875 YGACKALLDNFANREITDHMDRLPRDVASERLHHDIVRLLDEH-IPRSPQM 1924
Y K LLD+FANR+ITDHMDRLPRD+A ER+HHDIVRLLDE+ + RSPQ+
Sbjct: 171 YETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRSPQL 221
Score = 33.1 bits (74), Expect = 1.6, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 8/55 (14%)
Query: 1796 SLEN-TERNGSYLCECAKGYEGRDCLINTDDCASYLINADADINVPDNSGKTALH 1849
SL N T+R G A Y + D A L+ A AD N+ DN G+T LH
Sbjct: 16 SLHNQTDRTGETALHLAARY-------SRSDAAKRLLEASADANIQDNMGRTPLH 63
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On Hes-1
Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription Complex
Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription Complex
Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 115 bits (287), Expect = 3e-25, Method: Composition-based stats.
Identities = 58/111 (52%), Positives = 70/111 (63%), Gaps = 16/111 (14%)
Query: 1830 LINADADINVPDNSGKTALHWXXXXXXXXXXXXLLSHGVN---------------PREGS 1874
LIN+ AD+N D+ GK+ALHW LL +G N REGS
Sbjct: 144 LINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGS 203
Query: 1875 YGACKALLDNFANREITDHMDRLPRDVASERLHHDIVRLLDEH-IPRSPQM 1924
Y K LLD+FANR+ITDHMDRLPRD+A ER+HHDIVRLLDE+ + RSPQ+
Sbjct: 204 YETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRSPQL 254
Score = 33.1 bits (74), Expect = 1.6, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 8/55 (14%)
Query: 1796 SLEN-TERNGSYLCECAKGYEGRDCLINTDDCASYLINADADINVPDNSGKTALH 1849
SL N T+R G A Y + D A L+ A AD N+ DN G+T LH
Sbjct: 49 SLHNQTDRTGETALHLAARY-------SRSDAAKRLLEASADANIQDNMGRTPLH 96
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 109 bits (273), Expect = 1e-23, Method: Composition-based stats.
Identities = 54/103 (52%), Positives = 64/103 (62%), Gaps = 15/103 (14%)
Query: 1830 LINADADINVPDNSGKTALHWXXXXXXXXXXXXLLSHGVN---------------PREGS 1874
LIN+ AD+N D+ GK+ALHW LL +G N REGS
Sbjct: 108 LINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREGS 167
Query: 1875 YGACKALLDNFANREITDHMDRLPRDVASERLHHDIVRLLDEH 1917
Y K LLD+FANR+ITDHMDRLPRD+A ER+HHDIVRLLDE+
Sbjct: 168 YETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEY 210
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 108 bits (271), Expect = 2e-23, Method: Composition-based stats.
Identities = 54/102 (52%), Positives = 63/102 (61%), Gaps = 15/102 (14%)
Query: 1830 LINADADINVPDNSGKTALHWXXXXXXXXXXXXLLSHGVN---------------PREGS 1874
LIN+ AD+N D+ GK+ALHW LL +G N REGS
Sbjct: 34 LINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREGS 93
Query: 1875 YGACKALLDNFANREITDHMDRLPRDVASERLHHDIVRLLDE 1916
Y K LLD+FANR+ITDHMDRLPRD+A ER+HHDIVRLLDE
Sbjct: 94 YETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDE 135
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 107 bits (266), Expect = 8e-23, Method: Composition-based stats.
Identities = 53/101 (52%), Positives = 62/101 (61%), Gaps = 15/101 (14%)
Query: 1830 LINADADINVPDNSGKTALHWXXXXXXXXXXXXLLSHGVN---------------PREGS 1874
LIN+ AD+N D+ GK+ALHW LL +G N REGS
Sbjct: 143 LINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGS 202
Query: 1875 YGACKALLDNFANREITDHMDRLPRDVASERLHHDIVRLLD 1915
Y K LLD+FANR+ITDHMDRLPRD+A ER+HHDIVRLLD
Sbjct: 203 YETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLD 243
Score = 33.1 bits (74), Expect = 1.6, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 8/55 (14%)
Query: 1796 SLEN-TERNGSYLCECAKGYEGRDCLINTDDCASYLINADADINVPDNSGKTALH 1849
SL N T+R G A Y + D A L+ A AD N+ DN G+T LH
Sbjct: 48 SLHNQTDRTGETALHLAARY-------SRSDAAKRLLEASADANIQDNMGRTPLH 95
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 107 bits (266), Expect = 8e-23, Method: Composition-based stats.
Identities = 53/101 (52%), Positives = 62/101 (61%), Gaps = 15/101 (14%)
Query: 1830 LINADADINVPDNSGKTALHWXXXXXXXXXXXXLLSHGVN---------------PREGS 1874
LIN+ AD+N D+ GK+ALHW LL +G N REGS
Sbjct: 143 LINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGS 202
Query: 1875 YGACKALLDNFANREITDHMDRLPRDVASERLHHDIVRLLD 1915
Y K LLD+FANR+ITDHMDRLPRD+A ER+HHDIVRLLD
Sbjct: 203 YETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLD 243
Score = 34.7 bits (78), Expect = 0.53, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 8/55 (14%)
Query: 1796 SLEN-TERNGSYLCECAKGYEGRDCLINTDDCASYLINADADINVPDNSGKTALH 1849
SL N T+R G+ A Y + D A L+ A AD N+ DN G+T LH
Sbjct: 48 SLHNQTDRTGATALHLAAAY-------SRSDAAKRLLEASADANIQDNMGRTPLH 95
>pdb|4D90|A Chain A, Crystal Structure Of Del-1 Egf Domains
pdb|4D90|B Chain B, Crystal Structure Of Del-1 Egf Domains
Length = 143
Score = 87.0 bits (214), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/130 (41%), Positives = 71/130 (54%), Gaps = 21/130 (16%)
Query: 1320 CASNPCANGGVCVD-LIDG-FKCECPRGYYDARCLSDVD------------ECASDPCLN 1365
C NPC NGG+C+ L DG F CECP G+ D C S V+ C +PC N
Sbjct: 3 CDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHN 62
Query: 1366 GGTCE-------DGLNQFICHCKPGYGGKRCEFDIDECGSNPCQHGGICTDHLNGYTCEC 1418
GGTCE D ++C C G+ G C+ +I+EC PC++GGICTD + Y+CEC
Sbjct: 63 GGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQHNINECEVEPCKNGGICTDLVANYSCEC 122
Query: 1419 QIGYTGINCE 1428
+ G NC+
Sbjct: 123 PGEFMGRNCQ 132
Score = 84.7 bits (208), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/130 (40%), Positives = 66/130 (50%), Gaps = 21/130 (16%)
Query: 1093 CESHPCQNDGSCLDD--PGTFRCVCMPGFTGTQCETDID------------ECASNPCLN 1138
C+ +PC+N G CL G+F C C GFT C + ++ C NPC N
Sbjct: 3 CDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHN 62
Query: 1139 GGICN-------DLINTFKCACPIGFTGSHCQINIDDCVSSPCHNGGICKDSIAGYTCEC 1191
GG C D + C CP GF G HCQ NI++C PC NGGIC D +A Y+CEC
Sbjct: 63 GGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQHNINECEVEPCKNGGICTDLVANYSCEC 122
Query: 1192 LAGFTGMSCE 1201
F G +C+
Sbjct: 123 PGEFMGRNCQ 132
Score = 74.7 bits (182), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 64/131 (48%), Gaps = 21/131 (16%)
Query: 1282 CYSNPCRNGAKCVDGI--NRYSCECLPGYTGLHCE------------TNINECASNPCAN 1327
C NPC NG C+ G+ +SCEC G+T +C T+ C NPC N
Sbjct: 3 CDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHN 62
Query: 1328 GGVCV-------DLIDGFKCECPRGYYDARCLSDVDECASDPCLNGGTCEDGLNQFICHC 1380
GG C D G+ C+CPRG+ C +++EC +PC NGG C D + + C C
Sbjct: 63 GGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQHNINECEVEPCKNGGICTDLVANYSCEC 122
Query: 1381 KPGYGGKRCEF 1391
+ G+ C++
Sbjct: 123 PGEFMGRNCQY 133
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 74/157 (47%), Gaps = 34/157 (21%)
Query: 1167 DDCVSSPCHNGGICKDSIA--GYTCECLAGFTGMSCETNINDCASNPCHRGECIDGENSF 1224
D C +PC NGGIC +A ++CEC GFT +C +++ + AS D E
Sbjct: 1 DICDPNPCENGGICLPGLADGSFSCECPDGFTDPNC-SSVVEVAS---------DEEEP- 49
Query: 1225 TCACHPGFTGALCNTQLDECASNPCQFGGQCE-------DLINGYQCRCKPGTSGTNCEI 1277
T C NPC GG CE D GY C+C G +G +C+
Sbjct: 50 --------------TSAGPCTPNPCHNGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQH 95
Query: 1278 NINECYSNPCRNGAKCVDGINRYSCECLPGYTGLHCE 1314
NINEC PC+NG C D + YSCEC + G +C+
Sbjct: 96 NINECEVEPCKNGGICTDLVANYSCECPGEFMGRNCQ 132
Score = 73.2 bits (178), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 64/131 (48%), Gaps = 21/131 (16%)
Query: 1242 DECASNPCQFGGQC-EDLING-YQCRCKPGTSGTNC----EININE--------CYSNPC 1287
D C NPC+ GG C L +G + C C G + NC E+ +E C NPC
Sbjct: 1 DICDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPC 60
Query: 1288 RNGAKCV-------DGINRYSCECLPGYTGLHCETNINECASNPCANGGVCVDLIDGFKC 1340
NG C D Y C+C G+ G+HC+ NINEC PC NGG+C DL+ + C
Sbjct: 61 HNGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQHNINECEVEPCKNGGICTDLVANYSC 120
Query: 1341 ECPRGYYDARC 1351
ECP + C
Sbjct: 121 ECPGEFMGRNC 131
Score = 73.2 bits (178), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 68/155 (43%), Gaps = 37/155 (23%)
Query: 985 DDCASFPCQNGGTCLDEVGD--YSCLCVDGFSGKHC----EVDIDE--------CSSNPC 1030
D C PC+NGG CL + D +SC C DGF+ +C EV DE C+ NPC
Sbjct: 1 DICDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPC 60
Query: 1031 HNGATCNQFQMIFIFFTNQYSWFLIAGSPCEHDGTCVNTPGSFACNCTQGFTGPRCETNV 1090
HNG TC + Y G + C C +GF G C+ N+
Sbjct: 61 HNGGTCE--------ISEAYRGDTFIG---------------YVCKCPRGFNGIHCQHNI 97
Query: 1091 NECESHPCQNDGSCLDDPGTFRCVCMPGFTGTQCE 1125
NECE PC+N G C D + C C F G C+
Sbjct: 98 NECEVEPCKNGGICTDLVANYSCECPGEFMGRNCQ 132
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 65/134 (48%), Gaps = 22/134 (16%)
Query: 1129 DECASNPCLNGGICNDLI--NTFKCACPIGFTGSHCQINID------------DCVSSPC 1174
D C NPC NGGIC + +F C CP GFT +C ++ C +PC
Sbjct: 1 DICDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPC 60
Query: 1175 HNGGICK-------DSIAGYTCECLAGFTGMSCETNINDCASNPCHRGE-CIDGENSFTC 1226
HNGG C+ D+ GY C+C GF G+ C+ NIN+C PC G C D +++C
Sbjct: 61 HNGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQHNINECEVEPCKNGGICTDLVANYSC 120
Query: 1227 ACHPGFTGALCNTQ 1240
C F G C +
Sbjct: 121 ECPGEFMGRNCQYK 134
Score = 71.6 bits (174), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 67/132 (50%), Gaps = 18/132 (13%)
Query: 906 DPCVPNRCQHGARCTPSANFQDFACHCGVGWTGRYCNEDV----DECQLSS-------PC 954
D C PN C++G C P F+C C G+T C+ V DE + +S PC
Sbjct: 1 DICDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPC 60
Query: 955 RNGATCH-------NTNGSYLCECAKGYEGRDCLINTDDCASFPCQNGGTCLDEVGDYSC 1007
NG TC +T Y+C+C +G+ G C N ++C PC+NGG C D V +YSC
Sbjct: 61 HNGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQHNINECEVEPCKNGGICTDLVANYSC 120
Query: 1008 LCVDGFSGKHCE 1019
C F G++C+
Sbjct: 121 ECPGEFMGRNCQ 132
Score = 67.8 bits (164), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 60/130 (46%), Gaps = 18/130 (13%)
Query: 189 CESHPCQNDGSCLDDPGTFRCVCMCEPGYTGQNCESKYV------------PCDPSPCQN 236
C+ +PC+N G CL C C G+T NC S PC P+PC N
Sbjct: 3 CDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHN 62
Query: 237 GGVC------RELDNLNYECECQSGYRGKNCEENIDDCPGNLCQNGATCMDGINKYSCLC 290
GG C R + Y C+C G+ G +C+ NI++C C+NG C D + YSC C
Sbjct: 63 GGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQHNINECEVEPCKNGGICTDLVANYSCEC 122
Query: 291 LATYTGDLCE 300
+ G C+
Sbjct: 123 PGEFMGRNCQ 132
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 69/168 (41%), Gaps = 44/168 (26%)
Query: 310 PSVCHNGATCTNSV--GGFSCICVNGWTGPDCSLNIDDCAGAACFNGATCIDRVGSFYCQ 367
P+ C NG C + G FSC C +G+T P+CS ++ +
Sbjct: 5 PNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEE----------------- 47
Query: 368 CTPGKTGLLCHLEDACTSNPCHADAICDTNPIING----SYTCSCASGYKGVNCSEDINE 423
P G CT NPCH C+ + G Y C C G+ G++C +INE
Sbjct: 48 -EPTSAG-------PCTPNPCHNGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQHNINE 99
Query: 424 CEQGINCEINIDDCAFKPCRHGGTCIDLVNAYKCVCQVPYTGHDCHQK 471
CE +PC++GG C DLV Y C C + G +C K
Sbjct: 100 CE-------------VEPCKNGGICTDLVANYSCECPGEFMGRNCQYK 134
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 58/123 (47%), Gaps = 21/123 (17%)
Query: 601 NGGVCTA--LDGGHTCICPDNYSGRNCEYF------------GYDCDSNPCQNGGFCRSK 646
NGG+C DG +C CPD ++ NC C NPC NGG C
Sbjct: 10 NGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHNGGTCEIS 69
Query: 647 EGG------GYRCDCPPGATGTHCELDSRNECYSNPCQHAGTCEDRIADYACYCLPMWNG 700
E GY C CP G G HC+ + NEC PC++ G C D +A+Y+C C + G
Sbjct: 70 EAYRGDTFIGYVCKCPRGFNGIHCQHN-INECEVEPCKNGGICTDLVANYSCECPGEFMG 128
Query: 701 KNC 703
+NC
Sbjct: 129 RNC 131
Score = 64.3 bits (155), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 62/133 (46%), Gaps = 22/133 (16%)
Query: 229 CDPSPCQNGGVCRE-LDNLNYECECQSGYRGKNCEENID------------DCPGNLCQN 275
CDP+PC+NGG+C L + ++ CEC G+ NC ++ C N C N
Sbjct: 3 CDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHN 62
Query: 276 GATCM-------DGINKYSCLCLATYTGDLCEQDVDECSIRPSVCHNGATCTNSVGGFSC 328
G TC D Y C C + G C+ +++EC + P C NG CT+ V +SC
Sbjct: 63 GGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQHNINECEVEP--CKNGGICTDLVANYSC 120
Query: 329 ICVNGWTGPDCSL 341
C + G +C
Sbjct: 121 ECPGEFMGRNCQY 133
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 56/128 (43%), Gaps = 21/128 (16%)
Query: 1 CQNGGTCNVRQSPSYSPSFWCSCPIGFSASLC-----------EIPVANSCDSFPCMNGG 49
C+NGG C + SF C CP GF+ C E A C PC NGG
Sbjct: 8 CENGGICLPGLADG---SFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHNGG 64
Query: 50 TCTLKSLDR------YTCTCAPGFTGSQCELQ-DHCASSPCRNGAVCTSLEDTYECDCAP 102
TC + R Y C C GF G C+ + C PC+NG +CT L Y C+C
Sbjct: 65 TCEISEAYRGDTFIGYVCKCPRGFNGIHCQHNINECEVEPCKNGGICTDLVANYSCECPG 124
Query: 103 GFVGQTCS 110
F+G+ C
Sbjct: 125 EFMGRNCQ 132
Score = 60.5 bits (145), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 62/132 (46%), Gaps = 20/132 (15%)
Query: 868 DDCAFKPCRHGGTCIDLV--NAYKCVCQVPYTGHDCHQKLD------------PCVPNRC 913
D C PC +GG C+ + ++ C C +T +C ++ PC PN C
Sbjct: 1 DICDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPC 60
Query: 914 QHGARCTPSA-----NFQDFACHCGVGWTGRYCNEDVDECQLSSPCRNGATCHNTNGSYL 968
+G C S F + C C G+ G +C +++EC++ PC+NG C + +Y
Sbjct: 61 HNGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQHNINECEV-EPCKNGGICTDLVANYS 119
Query: 969 CECAKGYEGRDC 980
CEC + GR+C
Sbjct: 120 CECPGEFMGRNC 131
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 68/162 (41%), Gaps = 40/162 (24%)
Query: 76 DHCASSPCRNGAVCTS--LEDTYECDCAPGFVGQTCSEDIIECVDD---PCVHGECFNTH 130
D C +PC NG +C + ++ C+C GF CS ++E D P G C
Sbjct: 1 DICDPNPCENGGICLPGLADGSFSCECPDGFTDPNCS-SVVEVASDEEEPTSAGPC---- 55
Query: 131 GSYTFQMIFIFFTNQYSWFLIAGSPCEHDGTCV-------NTPGSFACNCTQGFTGPRCE 183
+PC + GTC +T + C C +GF G C+
Sbjct: 56 ---------------------TPNPCHNGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQ 94
Query: 184 TNVNECESHPCQNDGSCLDDPGTFRCVCMCEPGYTGQNCESK 225
N+NECE PC+N G C D + C C E + G+NC+ K
Sbjct: 95 HNINECEVEPCKNGGICTDLVANYSCECPGE--FMGRNCQYK 134
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 57/134 (42%), Gaps = 19/134 (14%)
Query: 266 DDCPGNLCQNGATCMDGI--NKYSCLCLATYTGDLCEQDVDECSIR----------PSVC 313
D C N C+NG C+ G+ +SC C +T C V+ S P+ C
Sbjct: 1 DICDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPC 60
Query: 314 HNGATCTNSVG-------GFSCICVNGWTGPDCSLNIDDCAGAACFNGATCIDRVGSFYC 366
HNG TC S G+ C C G+ G C NI++C C NG C D V ++ C
Sbjct: 61 HNGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQHNINECEVEPCKNGGICTDLVANYSC 120
Query: 367 QCTPGKTGLLCHLE 380
+C G C +
Sbjct: 121 ECPGEFMGRNCQYK 134
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 69/180 (38%), Gaps = 46/180 (25%)
Query: 381 DACTSNPCHADAICDTNPIINGSYTCSCASGYKGVNCSEDINECEQGINCEINIDDCAFK 440
D C NPC IC + +GS++C C G+ NCS + E + C
Sbjct: 1 DICDPNPCENGGICLPG-LADGSFSCECPDGFTDPNCS-SVVEVASDEEEPTSAGPCTPN 58
Query: 441 PCRHGGTCIDLVNAYKCVCQVPYTGHDCHQKLDPCVPNSACVRCLTPGMIVIRSWILVYR 500
PC +GGTC ++ AY+ + G+ C C R
Sbjct: 59 PCHNGGTC-EISEAYR---GDTFIGYVCK-----------CPRGFN-------------- 89
Query: 501 TERMVIDFGMKHIGSRCEGDINECLSNPCSSHGTLDCVQLVNNYHCNCRPGYMGRHCEVK 560
G C+ +INEC PC + G C LV NY C C +MGR+C+ K
Sbjct: 90 -------------GIHCQHNINECEVEPCKNGGI--CTDLVANYSCECPGEFMGRNCQYK 134
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 40/91 (43%), Gaps = 19/91 (20%)
Query: 632 CDSNPCQNGGFCRSKEG-GGYRCDCPPGATGTHC-----------ELDSRNECYSNPCQH 679
CD NPC+NGG C G + C+CP G T +C E S C NPC +
Sbjct: 3 CDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHN 62
Query: 680 AGTCE-------DRIADYACYCLPMWNGKNC 703
GTCE D Y C C +NG +C
Sbjct: 63 GGTCEISEAYRGDTFIGYVCKCPRGFNGIHC 93
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 44/106 (41%), Gaps = 21/106 (19%)
Query: 40 CDSFPCMNGGTCTLKSLD-RYTCTCAPGFTGSQCELQDHCAS-------------SPCRN 85
CD PC NGG C D ++C C GFT C AS +PC N
Sbjct: 3 CDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHN 62
Query: 86 GAVCTSLE----DT---YECDCAPGFVGQTCSEDIIECVDDPCVHG 124
G C E DT Y C C GF G C +I EC +PC +G
Sbjct: 63 GGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQHNINECEVEPCKNG 108
Score = 40.4 bits (93), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 24/39 (61%)
Query: 866 NIDDCAFKPCRHGGTCIDLVNAYKCVCQVPYTGHDCHQK 904
NI++C +PC++GG C DLV Y C C + G +C K
Sbjct: 96 NINECEVEPCKNGGICTDLVANYSCECPGEFMGRNCQYK 134
Score = 37.4 bits (85), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 51/133 (38%), Gaps = 14/133 (10%)
Query: 1564 EPPSLADGAISIIVLMDMQMFKQNKVSFLRELGHELRATVRIKQEPTGHEMIYQHGGICT 1623
+P +G I + L D + F + ++EPT G CT
Sbjct: 4 DPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPT-------SAGPCT 56
Query: 1624 DHL--NGYTCECQIGYTG----GYISLNMSTSTLGIICEINVPDCLPGACHNNGTCVDKV 1677
+ NG TCE Y G GY+ GI C+ N+ +C C N G C D V
Sbjct: 57 PNPCHNGGTCEISEAYRGDTFIGYV-CKCPRGFNGIHCQHNINECEVEPCKNGGICTDLV 115
Query: 1678 GGFECRCPPGFVG 1690
+ C CP F+G
Sbjct: 116 ANYSCECPGEFMG 128
Score = 37.4 bits (85), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 9/88 (10%)
Query: 861 QQQPINIDDCAFKPCRHGGTCI-------DLVNAYKCVCQVPYTGHDCHQKLDPCVPNRC 913
+++P + C PC +GGTC D Y C C + G C ++ C C
Sbjct: 46 EEEPTSAGPCTPNPCHNGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQHNINECEVEPC 105
Query: 914 QHGARCTPSANFQDFACHCGVGWTGRYC 941
++G CT +++C C + GR C
Sbjct: 106 KNGGICTDLV--ANYSCECPGEFMGRNC 131
>pdb|2YGQ|A Chain A, Wif Domain-Epidermal Growth Factor (Egf)-Like Domains 1-3 Of
Human Wnt Inhibitory Factor 1 In Complex With
1,2-Dipalmitoylphosphatidylcholine
Length = 324
Score = 61.2 bits (147), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 56/141 (39%), Positives = 71/141 (50%), Gaps = 21/141 (14%)
Query: 1287 CRNGAKCVDGINRYSCECLPGYTGLHCETNINECASNPCANGGVCVDLIDGFKCECPRGY 1346
CRNG C + R CEC G+ G HCE + + C NGG+CV GF C CP G+
Sbjct: 155 CRNGGFCNE---RRICECPDGFHGPHCEKAL---CTPRCMNGGLCV--TPGF-CICPPGF 205
Query: 1347 YDARCLSDVDECASDPCLNGGTCEDGLNQFICHCKPGYGGKRCEFDIDECGSNPCQHGGI 1406
Y C D C++ C NGGTC C C PG G++CE I +C PC++GG
Sbjct: 206 YGVNC--DKANCSTT-CFNGGTC---FYPGKCICPPGLEGEQCE--ISKC-PQPCRNGGK 256
Query: 1407 CTDHLNGYTCECQIGYTGINC 1427
C + C+C GY G C
Sbjct: 257 C---IGKSKCKCSKGYQGDLC 274
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 70/210 (33%), Positives = 83/210 (39%), Gaps = 36/210 (17%)
Query: 140 IFFTNQYSWFLIAGSPCEHDGTCVNTPGSF-----ACNCTQGFTGPRCETNVNECESHPC 194
I T Q + F E G C N G F C C GF GP CE + C C
Sbjct: 133 ILKTPQNAIFFKTCQQAECPGGCRN--GGFCNERRICECPDGFHGPHCEKAL--CTPR-C 187
Query: 195 QNDGSCLDDPGTFRCVCMCEPGYTGQNCESKYVPCDPSPCQNGGVCRELDNLNYECECQS 254
N G C+ PG C+C PG+ G NC+ + C NGG C +C C
Sbjct: 188 MNGGLCVT-PG----FCICPPGFYGVNCDKANCS---TTCFNGGTCFYPG----KCICPP 235
Query: 255 GYRGKNCEENIDDCPGNLCQNGATCMDGINKYSCLCLATYTGDLCEQDVDECSIRPSVCH 314
G G+ CE I CP C+NG C I K C C Y GDLC + V E C
Sbjct: 236 GLEGEQCE--ISKCP-QPCRNGGKC---IGKSKCKCSKGYQGDLCSKPVCE-----PGCG 284
Query: 315 NGATCTNSVGGFSCICVNGWTGPDCSLNID 344
TC C C GW G C+ +
Sbjct: 285 AHGTCHEPN---KCQCQEGWHGRHCNKRYE 311
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 80/181 (44%), Gaps = 32/181 (17%)
Query: 1136 CLNGGICNDLINTFKCACPIGFTGSHCQINIDDCVSSPCHNGGICKDSIAGYTCECLAGF 1195
C NGG CN+ C CP GF G HC+ + + C NGG+C + C C GF
Sbjct: 155 CRNGGFCNE---RRICECPDGFHGPHCEKAL---CTPRCMNGGLC---VTPGFCICPPGF 205
Query: 1196 TGMSCETNINDCASNPCHRGECIDGENSF---TCACHPGFTGALCNTQLDECASNPCQFG 1252
G++C+ +C++ C +G F C C PG G C ++ +C PC+ G
Sbjct: 206 YGVNCDK--ANCSTT------CFNGGTCFYPGKCICPPGLEGEQC--EISKC-PQPCRNG 254
Query: 1253 GQCEDLINGYQCRCKPGTSGTNCEININECYSNPCRNGAKCVDGINRYSCECLPGYTGLH 1312
G+C I +C+C G G C + E C C + C+C G+ G H
Sbjct: 255 GKC---IGKSKCKCSKGYQGDLCSKPVCE---PGCGAHGTCHE---PNKCQCQEGWHGRH 305
Query: 1313 C 1313
C
Sbjct: 306 C 306
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 51/115 (44%), Gaps = 21/115 (18%)
Query: 1 CQNGGTCNVRQSPSYSPSFWCSCPIGFSASLCEIPVANSCDSFPCMNGGTCTLKSLDRYT 60
C NGG C +P F C CP GF C+ AN S C NGGTC
Sbjct: 187 CMNGGLC-------VTPGF-CICPPGFYGVNCD--KANC--STTCFNGGTCFYPG----K 230
Query: 61 CTCAPGFTGSQCELQDHCASSPCRNGAVCTSLEDTYECDCAPGFVGQTCSEDIIE 115
C C PG G QCE+ PCRNG C +C C+ G+ G CS+ + E
Sbjct: 231 CICPPGLEGEQCEISK--CPQPCRNGGKCIG---KSKCKCSKGYQGDLCSKPVCE 280
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 86/222 (38%), Gaps = 65/222 (29%)
Query: 45 CMNGGTCTLKSLDRYTCTCAPGFTGSQCELQDHCASSPCRNGAVCTSLEDTYECDCAPGF 104
C NGG C +R C C GF G CE + C NG +C + C C PGF
Sbjct: 155 CRNGGFCN----ERRICECPDGFHGPHCE--KALCTPRCMNGGLCVT---PGFCICPPGF 205
Query: 105 VGQTCSEDIIECVDDPCVHGECFNTHGSYTFQMIFIFFTNQYSWFLIAGSPCEHDGTCVN 164
G C D CFN G C + G C+
Sbjct: 206 YGVNC--------DKANCSTTCFN------------------------GGTCFYPGKCI- 232
Query: 165 TPGSFACNCTQGFTGPRCETNVNECESHPCQNDGSCLDDPGTFRCVCMCEPGYTGQNCES 224
C G G +CE +++C PC+N G C+ + C C GY G C S
Sbjct: 233 --------CPPGLEGEQCE--ISKC-PQPCRNGGKCIG-----KSKCKCSKGYQGDLC-S 275
Query: 225 KYVPCDPSPCQNGGVCRELDNLNYECECQSGYRGKNCEENID 266
K V C+P C G C E + +C+CQ G+ G++C + +
Sbjct: 276 KPV-CEPG-CGAHGTCHEPN----KCQCQEGWHGRHCNKRYE 311
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 80/209 (38%), Gaps = 57/209 (27%)
Query: 992 CQNGGTCLDEVGDYSCLCVDGFSGKHCEVDIDECSSNPCHNGATCNQFQMIFIFFTNQYS 1051
C+NGG C + C C DGF G HCE + C+ C NG C
Sbjct: 155 CRNGGFCNER---RICECPDGFHGPHCEKAL--CTPR-CMNGGLCVT------------- 195
Query: 1052 WFLIAGSPCEHDGTCVNTPGSFACNCTQGFTGPRCETNVNECESHPCQNDGSCLDDPGTF 1111
G C+ PG + NC + C T C N G+C PG
Sbjct: 196 -----------PGFCICPPGFYGVNCDKA----NCSTT--------CFNGGTCF-YPG-- 229
Query: 1112 RCVCMPGFTGTQCETDIDECASNPCLNGGICNDLINTFKCACPIGFTGSHCQINIDDCVS 1171
+C+C PG G QCE I +C PC NGG C I KC C G+ G C +
Sbjct: 230 KCICPPGLEGEQCE--ISKC-PQPCRNGGKC---IGKSKCKCSKGYQGDLCSKPV---CE 280
Query: 1172 SPCHNGGICKDSIAGYTCECLAGFTGMSC 1200
C G C + C+C G+ G C
Sbjct: 281 PGCGAHGTCHEP---NKCQCQEGWHGRHC 306
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 68/224 (30%), Positives = 95/224 (42%), Gaps = 53/224 (23%)
Query: 253 QSGYRGKNCEENIDDCPGNLCQNGATCMDGINKYSCLCLATYTGDLCEQDVDECSIRPSV 312
Q+ K C++ +CPG C+NG C + + C C + G CE+ + C+ R
Sbjct: 138 QNAIFFKTCQQ--AECPGG-CRNGGFCNE---RRICECPDGFHGPHCEKAL--CTPR--- 186
Query: 313 CHNGATCTNSVGGFSCICVNGWTGPDCSLNIDDCAGAACFNGATCIDRVGSFY---CQCT 369
C NG C GF CIC G+ G +C + +C+ CFNG TC FY C C
Sbjct: 187 CMNGGLCVTP--GF-CICPPGFYGVNC--DKANCS-TTCFNGGTC------FYPGKCICP 234
Query: 370 PGKTGLLCHLEDACTSNPCHADAICDTNPIINGSYTCSCASGYKGVNCSEDINECEQGIN 429
PG G C + PC C G C C+ GY+G CS+ + CE G
Sbjct: 235 PGLEGEQCEISKC--PQPCRNGGKCI------GKSKCKCSKGYQGDLCSKPV--CEPG-- 282
Query: 430 CEINIDDCAFKPCRHGGTCIDLVNAYKCVCQVPYTGHDCHQKLD 473
C GTC + KC CQ + G C+++ +
Sbjct: 283 ------------CGAHGTCHE---PNKCQCQEGWHGRHCNKRYE 311
Score = 37.4 bits (85), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 44/104 (42%), Gaps = 17/104 (16%)
Query: 601 NGGVCTALDGGHTCICPDNYSGRNCEYFGYDCDSNPCQNGGFCRSKEGGGYRCDCPPGAT 660
NGG+C CICP + G NC+ +C S C NGG C +C CPPG
Sbjct: 189 NGGLCVTPG---FCICPPGFYGVNCDK--ANC-STTCFNGGTCFYPG----KCICPPGLE 238
Query: 661 GTHCELDSRNECYSNPCQHAGTCEDRIADYACYCLPMWNGKNCD 704
G CE+ PC++ G C I C C + G C
Sbjct: 239 GEQCEISK----CPQPCRNGGKC---IGKSKCKCSKGYQGDLCS 275
Score = 36.6 bits (83), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 63/148 (42%), Gaps = 32/148 (21%)
Query: 875 CRHGGTCIDLVNAYKCVCQVPYTGHDCHQKLDPCVPNRCQHGARCTPSANFQDFACHCGV 934
C +GG C V C+C + G +C + C +G C F C C
Sbjct: 187 CMNGGLC---VTPGFCICPPGFYGVNCDKAN---CSTTCFNGGTC-----FYPGKCICPP 235
Query: 935 GWTGRYCNEDVDECQLSSPCRNGATCHNTNGSYLCECAKGYEGRDCLINTDDCASFPCQN 994
G G C ++ +C PCRNG C G C+C+KGY+G D C+ C+
Sbjct: 236 GLEGEQC--EISKC--PQPCRNGGKC---IGKSKCKCSKGYQG-------DLCSKPVCEP 281
Query: 995 G----GTCLDEVGDYSCLCVDGFSGKHC 1018
G GTC + C C +G+ G+HC
Sbjct: 282 GCGAHGTCHE---PNKCQCQEGWHGRHC 306
Score = 35.0 bits (79), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 11/80 (13%)
Query: 873 KPCRHGGTCIDLVNAYKCVCQVPYTGHDCHQKLDPCVPNRCQHGARCTPSANFQDFACHC 932
+PCR+GG CI KC C Y G C + + C P HG P+ C C
Sbjct: 249 QPCRNGGKCI---GKSKCKCSKGYQGDLCSKPV--CEPGCGAHGTCHEPNK------CQC 297
Query: 933 GVGWTGRYCNEDVDECQLSS 952
GW GR+CN+ + + +
Sbjct: 298 QEGWHGRHCNKRYEASLIGT 317
Score = 34.7 bits (78), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 47/105 (44%), Gaps = 17/105 (16%)
Query: 601 NGGVCTALDGGHTCICPDNYSGRNCEYFGYDCDSNPCQNGGFCRSKEGGGYRCDCPPGAT 660
NGG C C CPD + G +CE + C NGG C + G+ C CPPG
Sbjct: 157 NGGFCNER---RICECPDGFHGPHCE---KALCTPRCMNGGLCVTP---GF-CICPPGFY 206
Query: 661 GTHCELDSRNECYSNPCQHAGTCEDRIADYACYCLPMWNGKNCDL 705
G +C+ + C S C + GTC C C P G+ C++
Sbjct: 207 GVNCD---KANC-STTCFNGGTC---FYPGKCICPPGLEGEQCEI 244
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 32/68 (47%), Gaps = 11/68 (16%)
Query: 637 CQNGGFCRSKEGGGYRCDCPPGATGTHCELDSRNECYSNPCQHAGTCEDRIADYACYCLP 696
C+NGGFC + C+CP G G HCE + C C + G C + C C P
Sbjct: 155 CRNGGFCNERR----ICECPDGFHGPHCE---KALCTPR-CMNGGLC---VTPGFCICPP 203
Query: 697 MWNGKNCD 704
+ G NCD
Sbjct: 204 GFYGVNCD 211
Score = 32.3 bits (72), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 60/160 (37%), Gaps = 20/160 (12%)
Query: 546 CNCRPGYMGRHCEVKDLAVKVTSMNASPTLAP-LTVLWIAYNWSXXXXXXXXXXXWNGGV 604
C C G+ G HCE K L MN + P + + +NGG
Sbjct: 167 CECPDGFHGPHCE-KALCTP-RCMNGGLCVTPGFCICPPGFYGVNCDKANCSTTCFNGGT 224
Query: 605 CTALDGGHTCICPDNYSGRNCEYFGYDCDSNPCQNGGFCRSKEGGGYRCDCPPGATGTHC 664
C CICP G CE C PC+NGG C K +C C G G C
Sbjct: 225 CFYPG---KCICPPGLEGEQCEI--SKC-PQPCRNGGKCIGKS----KCKCSKGYQGDLC 274
Query: 665 ELDSRNECYSNPCQHAGTCEDRIADYACYCLPMWNGKNCD 704
S+ C C GTC + C C W+G++C+
Sbjct: 275 ---SKPVCEPG-CGAHGTCHE---PNKCQCQEGWHGRHCN 307
>pdb|2RQZ|A Chain A, Structure Of Sugar Modified Epidermal Growth Factor-Like
Repeat 12 Of Mouse Notch-1 Receptor
pdb|2RR0|A Chain A, Structure Of Epidermal Growth Factor-Like Repeat 12 Of Mouse
Notch-1 Receptor
pdb|2RR2|A Chain A, Structure Of O-Fucosylated Epidermal Growth Factor-Like
Repeat 12 Of Mouse Notch-1 Receptor
Length = 38
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 29/38 (76%)
Query: 1089 NVNECESHPCQNDGSCLDDPGTFRCVCMPGFTGTQCET 1126
+VNEC S+PCQND +CLD G F+C+CMPG+ G CE
Sbjct: 1 DVNECISNPCQNDATCLDQIGEFQCICMPGYEGVYCEI 38
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 28/38 (73%)
Query: 1278 NINECYSNPCRNGAKCVDGINRYSCECLPGYTGLHCET 1315
++NEC SNPC+N A C+D I + C C+PGY G++CE
Sbjct: 1 DVNECISNPCQNDATCLDQIGEFQCICMPGYEGVYCEI 38
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/39 (61%), Positives = 29/39 (74%), Gaps = 2/39 (5%)
Query: 185 NVNECESHPCQNDGSCLDDPGTFRCVCMCEPGYTGQNCE 223
+VNEC S+PCQND +CLD G F+C+CM PGY G CE
Sbjct: 1 DVNECISNPCQNDATCLDQIGEFQCICM--PGYEGVYCE 37
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 29/38 (76%)
Query: 983 NTDDCASFPCQNGGTCLDEVGDYSCLCVDGFSGKHCEV 1020
+ ++C S PCQN TCLD++G++ C+C+ G+ G +CE+
Sbjct: 1 DVNECISNPCQNDATCLDQIGEFQCICMPGYEGVYCEI 38
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 24/38 (63%)
Query: 1354 DVDECASDPCLNGGTCEDGLNQFICHCKPGYGGKRCEF 1391
DV+EC S+PC N TC D + +F C C PGY G CE
Sbjct: 1 DVNECISNPCQNDATCLDQIGEFQCICMPGYEGVYCEI 38
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 670 NECYSNPCQHAGTCEDRIADYACYCLPMWNGKNCDL 705
NEC SNPCQ+ TC D+I ++ C C+P + G C++
Sbjct: 3 NECISNPCQNDATCLDQIGEFQCICMPGYEGVYCEI 38
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 520 DINECLSNPCSSHGTLDCVQLVNNYHCNCRPGYMGRHCEV 559
D+NEC+SNPC + T C+ + + C C PGY G +CE+
Sbjct: 1 DVNECISNPCQNDAT--CLDQIGEFQCICMPGYEGVYCEI 38
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 24/38 (63%)
Query: 1392 DIDECGSNPCQHGGICTDHLNGYTCECQIGYTGINCEI 1429
D++EC SNPCQ+ C D + + C C GY G+ CEI
Sbjct: 1 DVNECISNPCQNDATCLDQIGEFQCICMPGYEGVYCEI 38
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 24/38 (63%)
Query: 1127 DIDECASNPCLNGGICNDLINTFKCACPIGFTGSHCQI 1164
D++EC SNPC N C D I F+C C G+ G +C+I
Sbjct: 1 DVNECISNPCQNDATCLDQIGEFQCICMPGYEGVYCEI 38
Score = 40.0 bits (92), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 22/37 (59%)
Query: 1241 LDECASNPCQFGGQCEDLINGYQCRCKPGTSGTNCEI 1277
++EC SNPCQ C D I +QC C PG G CEI
Sbjct: 2 VNECISNPCQNDATCLDQIGEFQCICMPGYEGVYCEI 38
Score = 38.9 bits (89), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 342 NIDDCAGAACFNGATCIDRVGSFYCQCTPGKTGLLCHL 379
++++C C N ATC+D++G F C C PG G+ C +
Sbjct: 1 DVNECISNPCQNDATCLDQIGEFQCICMPGYEGVYCEI 38
Score = 38.9 bits (89), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 25/37 (67%)
Query: 264 NIDDCPGNLCQNGATCMDGINKYSCLCLATYTGDLCE 300
++++C N CQN ATC+D I ++ C+C+ Y G CE
Sbjct: 1 DVNECISNPCQNDATCLDQIGEFQCICMPGYEGVYCE 37
Score = 38.5 bits (88), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 1165 NIDDCVSSPCHNGGICKDSIAGYTCECLAGFTGMSCET 1202
++++C+S+PC N C D I + C C+ G+ G+ CE
Sbjct: 1 DVNECISNPCQNDATCLDQIGEFQCICMPGYEGVYCEI 38
Score = 37.7 bits (86), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 944 DVDECQLSSPCRNGATCHNTNGSYLCECAKGYEGRDCLI 982
DV+EC +S+PC+N ATC + G + C C GYEG C I
Sbjct: 1 DVNEC-ISNPCQNDATCLDQIGEFQCICMPGYEGVYCEI 38
Score = 37.4 bits (85), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 1658 NVPDCLPGACHNNGTCVDKVGGFECRCPPGFVG 1690
+V +C+ C N+ TC+D++G F+C C PG+ G
Sbjct: 1 DVNECISNPCQNDATCLDQIGEFQCICMPGYEG 33
Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 21/36 (58%)
Query: 1316 NINECASNPCANGGVCVDLIDGFKCECPRGYYDARC 1351
++NEC SNPC N C+D I F+C C GY C
Sbjct: 1 DVNECISNPCQNDATCLDQIGEFQCICMPGYEGVYC 36
Score = 36.6 bits (83), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 302 DVDECSIRPSVCHNGATCTNSVGGFSCICVNGWTGPDCSL 341
DV+EC P C N ATC + +G F CIC+ G+ G C +
Sbjct: 1 DVNECISNP--CQNDATCLDQIGEFQCICMPGYEGVYCEI 38
Score = 34.7 bits (78), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 1203 NINDCASNPCHR-GECIDGENSFTCACHPGFTGALCNT 1239
++N+C SNPC C+D F C C PG+ G C
Sbjct: 1 DVNECISNPCQNDATCLDQIGEFQCICMPGYEGVYCEI 38
Score = 34.3 bits (77), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 37 ANSCDSFPCMNGGTCTLKSLDRYTCTCAPGFTGSQCEL 74
N C S PC N TC L + + C C PG+ G CE+
Sbjct: 2 VNECISNPCQNDATC-LDQIGEFQCICMPGYEGVYCEI 38
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 631 DCDSNPCQNGGFCRSKEGGGYRCDCPPGATGTHCEL 666
+C SNPCQN C + G ++C C PG G +CE+
Sbjct: 4 ECISNPCQNDATCLDQ-IGEFQCICMPGYEGVYCEI 38
Score = 32.7 bits (73), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 154 SPCEHDGTCVNTPGSFACNCTQGFTGPRCET 184
+PC++D TC++ G F C C G+ G CE
Sbjct: 8 NPCQNDATCLDQIGEFQCICMPGYEGVYCEI 38
Score = 32.7 bits (73), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 1058 SPCEHDGTCVNTPGSFACNCTQGFTGPRCET 1088
+PC++D TC++ G F C C G+ G CE
Sbjct: 8 NPCQNDATCLDQIGEFQCICMPGYEGVYCEI 38
Score = 31.6 bits (70), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 433 NIDDCAFKPCRHGGTCIDLVNAYKCVCQVPYTGHDCH 469
++++C PC++ TC+D + ++C+C Y G C
Sbjct: 1 DVNECISNPCQNDATCLDQIGEFQCICMPGYEGVYCE 37
Score = 31.6 bits (70), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 866 NIDDCAFKPCRHGGTCIDLVNAYKCVCQVPYTGHDCH 902
++++C PC++ TC+D + ++C+C Y G C
Sbjct: 1 DVNECISNPCQNDATCLDQIGEFQCICMPGYEGVYCE 37
Score = 30.8 bits (68), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 76 DHCASSPCRNGAVCTSLEDTYECDCAPGFVGQTCS 110
+ C S+PC+N A C ++C C PG+ G C
Sbjct: 3 NECISNPCQNDATCLDQIGEFQCICMPGYEGVYCE 37
>pdb|1DAN|L Chain L, Complex Of Active Site Inhibited Human Blood Coagulation
Factor Viia With Human Recombinant Soluble Tissue Factor
pdb|1FAK|L Chain L, Human Tissue Factor Complexed With Coagulation Factor Viia
Inhibited With A Bpti-Mutant
pdb|1WQV|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Propylsulfonamide-D- Thr-Met-P-Aminobenzamidine
pdb|1WSS|L Chain L, Human Factor Viia-Tissue Factor In Complex With Peprid
Mimetic Inhibitor That Has Two Charge Groups In P2 And P4
pdb|1WTG|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-Biphenylalanine-Gln-P-Aminobenzamidine
pdb|1WUN|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-Trp-Gln-P-Aminobenzamidine
pdb|1WV7|L Chain L, Human Factor Viia-tissue Factor Complexed With
Ethylsulfonamide-d-5-propoxy-trp-gln-p-aminobenzamidine
pdb|2A2Q|L Chain L, Complex Of Active-Site Inhibited Human Coagulation Factor
Viia With Human Soluble Tissue Factor In The Presence Of
Ca2+, Mg2+, Na+, And Zn2+
pdb|2AEI|L Chain L, Crystal Structure Of A Ternary Complex Of Factor ViiaTISSUE
FACTOR And
2-[[6-[3-(Aminoiminomethyl)phenoxy]-3,
5-Difluro-4-[(1-Methyl-3-
Phenylpropyl)amino]-2-Pyridinyl]oxy]-Benzoic Acid
pdb|2ZP0|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Benzylsulfonamide-D- Ile-Gln-P-Aminobenzamidine
pdb|2ZWL|L Chain L, Human Factor Viia-Tissue Factor Complexed With Highly
Selective Peptide Inhibitor
pdb|2ZZU|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-5-
(3-Carboxybenzyloxy)-Trp-Gln-P-Aminobenzamidine
Length = 152
Score = 54.3 bits (129), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 8/88 (9%)
Query: 1353 SDVDECASDPCLNGGTCEDGLNQFICHCKPGYGGKRCEFDIDECGSNPCQHGG---ICTD 1409
SD D+CAS PC NGG+C+D L +IC C P + G+ CE D+ ++GG C+D
Sbjct: 45 SDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSD 104
Query: 1410 HL-NGYTCECQIGYT----GINCEINID 1432
H +C C GY+ G++C ++
Sbjct: 105 HTGTKRSCRCHEGYSLLADGVSCTPTVE 132
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 26/40 (65%)
Query: 1167 DDCVSSPCHNGGICKDSIAGYTCECLAGFTGMSCETNIND 1206
D C SSPC NGG CKD + Y C CL F G +CET+ +D
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 87
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 4/102 (3%)
Query: 1126 TDIDECASNPCLNGGICNDLINTFKCACPIGFTGSHCQINIDDCVSSPCHNGG---ICKD 1182
+D D+CAS+PC NGG C D + ++ C C F G +C+ + DD + NGG C D
Sbjct: 45 SDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSD 104
Query: 1183 SI-AGYTCECLAGFTGMSCETNINDCASNPCHRGECIDGENS 1223
+C C G++ ++ + PC + ++ N+
Sbjct: 105 HTGTKRSCRCHEGYSLLADGVSCTPTVEYPCGKIPILEKRNA 146
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 985 DDCASFPCQNGGTCLDEVGDYSCLCVDGFSGKHCEVDIDE 1024
D CAS PCQNGG+C D++ Y C C+ F G++CE D+
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 87
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 26/42 (61%)
Query: 1392 DIDECGSNPCQHGGICTDHLNGYTCECQIGYTGINCEINIDD 1433
D D+C S+PCQ+GG C D L Y C C + G NCE + DD
Sbjct: 46 DGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 87
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 29/37 (78%)
Query: 670 NECYSNPCQHAGTCEDRIADYACYCLPMWNGKNCDLY 706
++C S+PCQ+ G+C+D++ Y C+CLP + G+NC+ +
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETH 84
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Query: 944 DVDECQLSSPCRNGATCHNTNGSYLCECAKGYEGRDCLINTDDCASFPCQNGG---TCLD 1000
D D+C SSPC+NG +C + SY+C C +EGR+C + DD +NGG C D
Sbjct: 46 DGDQC-ASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSD 104
Query: 1001 EVG-DYSCLCVDGFS 1014
G SC C +G+S
Sbjct: 105 HTGTKRSCRCHEGYS 119
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 1091 NECESHPCQNDGSCLDDPGTFRCVCMPGFTGTQCETDIDECASNPCLNGG---ICNDLIN 1147
++C S PCQN GSC D ++ C C+P F G CET D+ NGG C+D
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTG 107
Query: 1148 TFK-CACPIGFTGSHCQINIDDCVSSPC 1174
T + C C G++ ++ V PC
Sbjct: 108 TKRSCRCHEGYSLLADGVSCTPTVEYPC 135
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 1242 DECASNPCQFGGQCEDLINGYQCRCKPGTSGTNCEININECYSNPCRNGA---KCVDGI- 1297
D+CAS+PCQ GG C+D + Y C C P G NCE + ++ NG C D
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTG 107
Query: 1298 NRYSCECLPGYTGL 1311
+ SC C GY+ L
Sbjct: 108 TKRSCRCHEGYSLL 121
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 27/40 (67%)
Query: 1280 NECYSNPCRNGAKCVDGINRYSCECLPGYTGLHCETNINE 1319
++C S+PC+NG C D + Y C CLP + G +CET+ ++
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 87
Score = 39.7 bits (91), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 187 NECESHPCQNDGSCLDDPGTFRCVCMCEPGYTGQNCESKYVPCDPSPCQNGG---VCREL 243
++C S PCQN GSC D ++ +C C P + G+NCE+ +NGG C +
Sbjct: 48 DQCASSPCQNGGSCKDQLQSY--ICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDH 105
Query: 244 DNLNYECECQSGY 256
C C GY
Sbjct: 106 TGTKRSCRCHEGY 118
Score = 38.9 bits (89), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 76 DHCASSPCRNGAVCTSLEDTYECDCAPGFVGQTC---SEDIIECVDD 119
D CASSPC+NG C +Y C C P F G+ C +D + CV++
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNE 94
Score = 36.6 bits (83), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 266 DDCPGNLCQNGATCMDGINKYSCLCLATYTGDLCEQDVDE 305
D C + CQNG +C D + Y C CL + G CE D+
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 87
Score = 35.4 bits (80), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Query: 229 CDPSPCQNGGVCRELDNL-NYECECQSGYRGKNCEENIDD 267
C SPCQNGG C+ D L +Y C C + G+NCE + DD
Sbjct: 50 CASSPCQNGGSCK--DQLQSYICFCLPAFEGRNCETHKDD 87
Score = 35.4 bits (80), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 435 DDCAFKPCRHGGTCIDLVNAYKCVCQVPYTGHDCHQKLD 473
D CA PC++GG+C D + +Y C C + G +C D
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKD 86
Score = 35.4 bits (80), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 868 DDCAFKPCRHGGTCIDLVNAYKCVCQVPYTGHDCHQKLD 906
D CA PC++GG+C D + +Y C C + G +C D
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKD 86
Score = 34.3 bits (77), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 38 NSCDSFPCMNGGTCTLKSLDRYTCTCAPGFTGSQCE 73
+ C S PC NGG+C L Y C C P F G CE
Sbjct: 48 DQCASSPCQNGGSCK-DQLQSYICFCLPAFEGRNCE 82
Score = 34.3 bits (77), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 152 AGSPCEHDGTCVNTPGSFACNCTQGFTGPRCETNVNECESHPCQNDG---SCLDDPGTFR 208
A SPC++ G+C + S+ C C F G CET+ ++ +N G C D GT R
Sbjct: 51 ASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGTKR 110
Query: 209 CVCMCEPGYT 218
C C GY+
Sbjct: 111 -SCRCHEGYS 119
Score = 32.3 bits (72), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 1056 AGSPCEHDGTCVNTPGSFACNCTQGFTGPRCETNVNECESHPCQNDG---SCLDDPGTFR 1112
A SPC++ G+C + S+ C C F G CET+ ++ +N G C D GT R
Sbjct: 51 ASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGTKR 110
Query: 1113 -CVCMPGFT 1120
C C G++
Sbjct: 111 SCRCHEGYS 119
Score = 31.6 bits (70), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 1432 DDCAFKPCRHGGTCIDLVNAYKCVCAKAGNHR 1463
D CA PC++GG+C D + +Y C C A R
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGR 79
Score = 31.2 bits (69), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 302 DVDECSIRPSVCHNGATCTNSVGGFSCICVNGWTGPDCSLNIDD 345
D D+C+ P C NG +C + + + C C+ + G +C + DD
Sbjct: 46 DGDQCASSP--CQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 87
Score = 31.2 bits (69), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 1318 NECASNPCANGGVCVDLIDGFKCECPRGYYDARCLSDVDE 1357
++CAS+PC NGG C D + + C C + C + D+
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 87
Score = 30.8 bits (68), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 520 DINECLSNPCSSHGTLDCVQLVNNYHCNCRPGYMGRHCEV 559
D ++C S+PC + G+ C + +Y C C P + GR+CE
Sbjct: 46 DGDQCASSPCQNGGS--CKDQLQSYICFCLPAFEGRNCET 83
>pdb|1W0Y|L Chain L, Tf7a_3771 Complex
pdb|1W2K|L Chain L, Tf7a_4380 Complex
Length = 142
Score = 54.3 bits (129), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 8/88 (9%)
Query: 1353 SDVDECASDPCLNGGTCEDGLNQFICHCKPGYGGKRCEFDIDECGSNPCQHGG---ICTD 1409
SD D+CAS PC NGG+C+D L +IC C P + G+ CE D+ ++GG C+D
Sbjct: 45 SDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSD 104
Query: 1410 HL-NGYTCECQIGYT----GINCEINID 1432
H +C C GY+ G++C ++
Sbjct: 105 HTGTKRSCRCHEGYSLLADGVSCTPTVE 132
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 26/40 (65%)
Query: 1167 DDCVSSPCHNGGICKDSIAGYTCECLAGFTGMSCETNIND 1206
D C SSPC NGG CKD + Y C CL F G +CET+ +D
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 87
Score = 47.4 bits (111), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 985 DDCASFPCQNGGTCLDEVGDYSCLCVDGFSGKHCEVDIDE 1024
D CAS PCQNGG+C D++ Y C C+ F G++CE D+
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 87
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 8/88 (9%)
Query: 1126 TDIDECASNPCLNGGICNDLINTFKCACPIGFTGSHCQINIDDCVSSPCHNGG---ICKD 1182
+D D+CAS+PC NGG C D + ++ C C F G +C+ + DD + NGG C D
Sbjct: 45 SDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSD 104
Query: 1183 SI-AGYTCECLAGFT----GMSCETNIN 1205
+C C G++ G+SC +
Sbjct: 105 HTGTKRSCRCHEGYSLLADGVSCTPTVE 132
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 29/37 (78%)
Query: 670 NECYSNPCQHAGTCEDRIADYACYCLPMWNGKNCDLY 706
++C S+PCQ+ G+C+D++ Y C+CLP + G+NC+ +
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETH 84
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 26/42 (61%)
Query: 1392 DIDECGSNPCQHGGICTDHLNGYTCECQIGYTGINCEINIDD 1433
D D+C S+PCQ+GG C D L Y C C + G NCE + DD
Sbjct: 46 DGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 87
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Query: 944 DVDECQLSSPCRNGATCHNTNGSYLCECAKGYEGRDCLINTDDCASFPCQNGG---TCLD 1000
D D+C SSPC+NG +C + SY+C C +EGR+C + DD +NGG C D
Sbjct: 46 DGDQCA-SSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSD 104
Query: 1001 EVG-DYSCLCVDGFS 1014
G SC C +G+S
Sbjct: 105 HTGTKRSCRCHEGYS 119
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 1242 DECASNPCQFGGQCEDLINGYQCRCKPGTSGTNCEININECYSNPCRNGA---KCVDGI- 1297
D+CAS+PCQ GG C+D + Y C C P G NCE + ++ NG C D
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTG 107
Query: 1298 NRYSCECLPGYTGL 1311
+ SC C GY+ L
Sbjct: 108 TKRSCRCHEGYSLL 121
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 1091 NECESHPCQNDGSCLDDPGTFRCVCMPGFTGTQCETDIDECASNPCLNGG---ICNDLIN 1147
++C S PCQN GSC D ++ C C+P F G CET D+ NGG C+D
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTG 107
Query: 1148 TFK-CACPIGFTGSHCQINIDDCVSSPC 1174
T + C C G++ ++ V PC
Sbjct: 108 TKRSCRCHEGYSLLADGVSCTPTVEYPC 135
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 27/40 (67%)
Query: 1280 NECYSNPCRNGAKCVDGINRYSCECLPGYTGLHCETNINE 1319
++C S+PC+NG C D + Y C CLP + G +CET+ ++
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 87
Score = 39.7 bits (91), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 187 NECESHPCQNDGSCLDDPGTFRCVCMCEPGYTGQNCESKYVPCDPSPCQNGG---VCREL 243
++C S PCQN GSC D ++ +C C P + G+NCE+ +NGG C +
Sbjct: 48 DQCASSPCQNGGSCKDQLQSY--ICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDH 105
Query: 244 DNLNYECECQSGY 256
C C GY
Sbjct: 106 TGTKRSCRCHEGY 118
Score = 38.9 bits (89), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 76 DHCASSPCRNGAVCTSLEDTYECDCAPGFVGQTC---SEDIIECVDD 119
D CASSPC+NG C +Y C C P F G+ C +D + CV++
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNE 94
Score = 36.6 bits (83), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 266 DDCPGNLCQNGATCMDGINKYSCLCLATYTGDLCEQDVDE 305
D C + CQNG +C D + Y C CL + G CE D+
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 87
Score = 35.8 bits (81), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Query: 229 CDPSPCQNGGVCRELDNL-NYECECQSGYRGKNCEENIDD 267
C SPCQNGG C+ D L +Y C C + G+NCE + DD
Sbjct: 50 CASSPCQNGGSCK--DQLQSYICFCLPAFEGRNCETHKDD 87
Score = 35.4 bits (80), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 435 DDCAFKPCRHGGTCIDLVNAYKCVCQVPYTGHDCHQKLD 473
D CA PC++GG+C D + +Y C C + G +C D
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKD 86
Score = 35.4 bits (80), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 868 DDCAFKPCRHGGTCIDLVNAYKCVCQVPYTGHDCHQKLD 906
D CA PC++GG+C D + +Y C C + G +C D
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKD 86
Score = 34.7 bits (78), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 37 ANSCDSFPCMNGGTCTLKSLDRYTCTCAPGFTGSQCE 73
+ C S PC NGG+C L Y C C P F G CE
Sbjct: 47 GDQCASSPCQNGGSCK-DQLQSYICFCLPAFEGRNCE 82
Score = 34.3 bits (77), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 152 AGSPCEHDGTCVNTPGSFACNCTQGFTGPRCETNVNECESHPCQNDG---SCLDDPGTFR 208
A SPC++ G+C + S+ C C F G CET+ ++ +N G C D GT R
Sbjct: 51 ASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGTKR 110
Query: 209 CVCMCEPGYT 218
C C GY+
Sbjct: 111 -SCRCHEGYS 119
Score = 32.7 bits (73), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 1056 AGSPCEHDGTCVNTPGSFACNCTQGFTGPRCETNVNECESHPCQNDG---SCLDDPGTFR 1112
A SPC++ G+C + S+ C C F G CET+ ++ +N G C D GT R
Sbjct: 51 ASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGTKR 110
Query: 1113 -CVCMPGFT 1120
C C G++
Sbjct: 111 SCRCHEGYS 119
Score = 31.6 bits (70), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 1432 DDCAFKPCRHGGTCIDLVNAYKCVCAKAGNHR 1463
D CA PC++GG+C D + +Y C C A R
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGR 79
Score = 31.2 bits (69), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 302 DVDECSIRPSVCHNGATCTNSVGGFSCICVNGWTGPDCSLNIDD 345
D D+C+ P C NG +C + + + C C+ + G +C + DD
Sbjct: 46 DGDQCASSP--CQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 87
Score = 30.8 bits (68), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 1318 NECASNPCANGGVCVDLIDGFKCECPRGYYDARCLSDVDE 1357
++CAS+PC NGG C D + + C C + C + D+
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 87
Score = 30.8 bits (68), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 520 DINECLSNPCSSHGTLDCVQLVNNYHCNCRPGYMGRHCEV 559
D ++C S+PC + G+ C + +Y C C P + GR+CE
Sbjct: 46 DGDQCASSPCQNGGS--CKDQLQSYICFCLPAFEGRNCET 83
Score = 30.4 bits (67), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 629 GYDCDSNPCQNGGFCRSKEGGGYRCDCPPGATGTHCE 665
G C S+PCQNGG C+ + Y C C P G +CE
Sbjct: 47 GDQCASSPCQNGGSCKD-QLQSYICFCLPAFEGRNCE 82
>pdb|1Z6J|L Chain L, Crystal Structure Of A Ternary Complex Of Factor Viia/tissue
Factor/pyrazinone Inhibitor
pdb|2AER|L Chain L, Crystal Structure Of Benzamidine-Factor ViiaSOLUBLE TISSUE
Factor Complex.
pdb|2FIR|L Chain L, Crystal Structure Of Dfpr-ViiaSTF
pdb|2C4F|L Chain L, Crystal Structure Of Factor Vii.Stf Complexed With Pd0297121
pdb|2B8O|L Chain L, Crystal Structure Of Glu-gly-arg-chloromethyl Ketone-factor
Viia/soluble Tissue Factor Complex
pdb|2EC9|L Chain L, Crystal Structure Analysis Of Human Factor Viia , Souluble
Tissue Factor Complexed With Bcx-3607
pdb|3TH2|L Chain L, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
pdb|3TH3|L Chain L, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
pdb|3TH4|L Chain L, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
Length = 142
Score = 53.9 bits (128), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 8/88 (9%)
Query: 1353 SDVDECASDPCLNGGTCEDGLNQFICHCKPGYGGKRCEFDIDECGSNPCQHGG---ICTD 1409
SD D+CAS PC NGG+C+D L +IC C P + G+ CE D+ ++GG C+D
Sbjct: 45 SDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSD 104
Query: 1410 HL-NGYTCECQIGYT----GINCEINID 1432
H +C C GY+ G++C ++
Sbjct: 105 HTGTKRSCRCHEGYSLLADGVSCTPTVE 132
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 26/40 (65%)
Query: 1167 DDCVSSPCHNGGICKDSIAGYTCECLAGFTGMSCETNIND 1206
D C SSPC NGG CKD + Y C CL F G +CET+ +D
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 87
Score = 47.4 bits (111), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 985 DDCASFPCQNGGTCLDEVGDYSCLCVDGFSGKHCEVDIDE 1024
D CAS PCQNGG+C D++ Y C C+ F G++CE D+
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 87
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 8/88 (9%)
Query: 1126 TDIDECASNPCLNGGICNDLINTFKCACPIGFTGSHCQINIDDCVSSPCHNGG---ICKD 1182
+D D+CAS+PC NGG C D + ++ C C F G +C+ + DD + NGG C D
Sbjct: 45 SDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSD 104
Query: 1183 SI-AGYTCECLAGFT----GMSCETNIN 1205
+C C G++ G+SC +
Sbjct: 105 HTGTKRSCRCHEGYSLLADGVSCTPTVE 132
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 29/37 (78%)
Query: 670 NECYSNPCQHAGTCEDRIADYACYCLPMWNGKNCDLY 706
++C S+PCQ+ G+C+D++ Y C+CLP + G+NC+ +
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETH 84
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 26/42 (61%)
Query: 1392 DIDECGSNPCQHGGICTDHLNGYTCECQIGYTGINCEINIDD 1433
D D+C S+PCQ+GG C D L Y C C + G NCE + DD
Sbjct: 46 DGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 87
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Query: 944 DVDECQLSSPCRNGATCHNTNGSYLCECAKGYEGRDCLINTDDCASFPCQNGG---TCLD 1000
D D+C SSPC+NG +C + SY+C C +EGR+C + DD +NGG C D
Sbjct: 46 DGDQCA-SSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSD 104
Query: 1001 EVG-DYSCLCVDGFS 1014
G SC C +G+S
Sbjct: 105 HTGTKRSCRCHEGYS 119
Score = 44.3 bits (103), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
Query: 1242 DECASNPCQFGGQCEDLINGYQCRCKPGTSGTNCEININECYSNPCRNGA---KCVDGI- 1297
D+CAS+PCQ GG C+D + Y C C P G NCE + ++ NG C D
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTG 107
Query: 1298 NRYSCECLPGYTGLHCETNINECASNPCAN 1327
+ SC C GY+ L + PC
Sbjct: 108 TKRSCRCHEGYSLLADGVSCTPTVEYPCGK 137
Score = 43.9 bits (102), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 1091 NECESHPCQNDGSCLDDPGTFRCVCMPGFTGTQCETDIDECASNPCLNGG---ICNDLIN 1147
++C S PCQN GSC D ++ C C+P F G CET D+ NGG C+D
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTG 107
Query: 1148 TFK-CACPIGFTGSHCQINIDDCVSSPC 1174
T + C C G++ ++ V PC
Sbjct: 108 TKRSCRCHEGYSLLADGVSCTPTVEYPC 135
Score = 39.7 bits (91), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 187 NECESHPCQNDGSCLDDPGTFRCVCMCEPGYTGQNCESKYVPCDPSPCQNGG---VCREL 243
++C S PCQN GSC D ++ +C C P + G+NCE+ +NGG C +
Sbjct: 48 DQCASSPCQNGGSCKDQLQSY--ICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDH 105
Query: 244 DNLNYECECQSGY 256
C C GY
Sbjct: 106 TGTKRSCRCHEGY 118
Score = 38.9 bits (89), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 76 DHCASSPCRNGAVCTSLEDTYECDCAPGFVGQTC---SEDIIECVDD 119
D CASSPC+NG C +Y C C P F G+ C +D + CV++
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNE 94
Score = 36.2 bits (82), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 266 DDCPGNLCQNGATCMDGINKYSCLCLATYTGDLCEQDVDE 305
D C + CQNG +C D + Y C CL + G CE D+
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 87
Score = 35.8 bits (81), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Query: 229 CDPSPCQNGGVCRELDNL-NYECECQSGYRGKNCEENIDD 267
C SPCQNGG C+ D L +Y C C + G+NCE + DD
Sbjct: 50 CASSPCQNGGSCK--DQLQSYICFCLPAFEGRNCETHKDD 87
Score = 35.4 bits (80), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 435 DDCAFKPCRHGGTCIDLVNAYKCVCQVPYTGHDCHQKLD 473
D CA PC++GG+C D + +Y C C + G +C D
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKD 86
Score = 35.4 bits (80), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 868 DDCAFKPCRHGGTCIDLVNAYKCVCQVPYTGHDCHQKLD 906
D CA PC++GG+C D + +Y C C + G +C D
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKD 86
Score = 34.3 bits (77), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 37 ANSCDSFPCMNGGTCTLKSLDRYTCTCAPGFTGSQCE 73
+ C S PC NGG+C L Y C C P F G CE
Sbjct: 47 GDQCASSPCQNGGSCK-DQLQSYICFCLPAFEGRNCE 82
Score = 34.3 bits (77), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 152 AGSPCEHDGTCVNTPGSFACNCTQGFTGPRCETNVNECESHPCQNDG---SCLDDPGTFR 208
A SPC++ G+C + S+ C C F G CET+ ++ +N G C D GT R
Sbjct: 51 ASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGTKR 110
Query: 209 CVCMCEPGYT 218
C C GY+
Sbjct: 111 -SCRCHEGYS 119
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 1056 AGSPCEHDGTCVNTPGSFACNCTQGFTGPRCETNVNECESHPCQNDG---SCLDDPGTFR 1112
A SPC++ G+C + S+ C C F G CET+ ++ +N G C D GT R
Sbjct: 51 ASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGTKR 110
Query: 1113 -CVCMPGFT 1120
C C G++
Sbjct: 111 SCRCHEGYS 119
Score = 31.6 bits (70), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 1432 DDCAFKPCRHGGTCIDLVNAYKCVCAKAGNHR 1463
D CA PC++GG+C D + +Y C C A R
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGR 79
Score = 30.8 bits (68), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 302 DVDECSIRPSVCHNGATCTNSVGGFSCICVNGWTGPDCSLNIDD 345
D D+C+ P C NG +C + + + C C+ + G +C + DD
Sbjct: 46 DGDQCASSP--CQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 87
Score = 30.8 bits (68), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 1318 NECASNPCANGGVCVDLIDGFKCECPRGYYDARCLSDVDE 1357
++CAS+PC NGG C D + + C C + C + D+
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 87
Score = 30.8 bits (68), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 520 DINECLSNPCSSHGTLDCVQLVNNYHCNCRPGYMGRHCEV 559
D ++C S+PC + G+ C + +Y C C P + GR+CE
Sbjct: 46 DGDQCASSPCQNGGS--CKDQLQSYICFCLPAFEGRNCET 83
>pdb|1O5D|L Chain L, Dissecting And Designing Inhibitor Selectivity Determinants
At The S1 Site Using An Artificial Ala190 Protease
(Ala190 Upa)
pdb|2B7D|L Chain L, Factor Viia Inhibitors: Chemical Optimization, Preclinical
Pharmacokinetics, Pharmacodynamics, And Efficacy In A
Baboon Thrombosis Model
pdb|2F9B|L Chain L, Discovery Of Novel Heterocyclic Factor Viia Inhibitors
pdb|2FLB|L Chain L, Discovery Of A Novel Hydroxy Pyrazole Based Factor Ixa
Inhibitor
pdb|2FLR|L Chain L, Novel 5-azaindole Factor Viia Inhibitors
pdb|3ELA|L Chain L, Crystal Structure Of Active Site Inhibited Coagulation
Factor Viia Mutant In Complex With Soluble Tissue Factor
Length = 152
Score = 53.9 bits (128), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 8/88 (9%)
Query: 1353 SDVDECASDPCLNGGTCEDGLNQFICHCKPGYGGKRCEFDIDECGSNPCQHGG---ICTD 1409
SD D+CAS PC NGG+C+D L +IC C P + G+ CE D+ ++GG C+D
Sbjct: 45 SDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSD 104
Query: 1410 HL-NGYTCECQIGYT----GINCEINID 1432
H +C C GY+ G++C ++
Sbjct: 105 HTGTKRSCRCHEGYSLLADGVSCTPTVE 132
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 26/40 (65%)
Query: 1167 DDCVSSPCHNGGICKDSIAGYTCECLAGFTGMSCETNIND 1206
D C SSPC NGG CKD + Y C CL F G +CET+ +D
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 87
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 4/102 (3%)
Query: 1126 TDIDECASNPCLNGGICNDLINTFKCACPIGFTGSHCQINIDDCVSSPCHNGG---ICKD 1182
+D D+CAS+PC NGG C D + ++ C C F G +C+ + DD + NGG C D
Sbjct: 45 SDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSD 104
Query: 1183 SI-AGYTCECLAGFTGMSCETNINDCASNPCHRGECIDGENS 1223
+C C G++ ++ + PC + ++ N+
Sbjct: 105 HTGTKRSCRCHEGYSLLADGVSCTPTVEYPCGKIPILEKRNA 146
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 985 DDCASFPCQNGGTCLDEVGDYSCLCVDGFSGKHCEVDIDE 1024
D CAS PCQNGG+C D++ Y C C+ F G++CE D+
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 87
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 29/37 (78%)
Query: 670 NECYSNPCQHAGTCEDRIADYACYCLPMWNGKNCDLY 706
++C S+PCQ+ G+C+D++ Y C+CLP + G+NC+ +
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETH 84
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 26/42 (61%)
Query: 1392 DIDECGSNPCQHGGICTDHLNGYTCECQIGYTGINCEINIDD 1433
D D+C S+PCQ+GG C D L Y C C + G NCE + DD
Sbjct: 46 DGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 87
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Query: 944 DVDECQLSSPCRNGATCHNTNGSYLCECAKGYEGRDCLINTDDCASFPCQNGG---TCLD 1000
D D+C SSPC+NG +C + SY+C C +EGR+C + DD +NGG C D
Sbjct: 46 DGDQC-ASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSD 104
Query: 1001 EVG-DYSCLCVDGFS 1014
G SC C +G+S
Sbjct: 105 HTGTKRSCRCHEGYS 119
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 1091 NECESHPCQNDGSCLDDPGTFRCVCMPGFTGTQCETDIDECASNPCLNGG---ICNDLIN 1147
++C S PCQN GSC D ++ C C+P F G CET D+ NGG C+D
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTG 107
Query: 1148 TFK-CACPIGFTGSHCQINIDDCVSSPC 1174
T + C C G++ ++ V PC
Sbjct: 108 TKRSCRCHEGYSLLADGVSCTPTVEYPC 135
Score = 43.9 bits (102), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 1242 DECASNPCQFGGQCEDLINGYQCRCKPGTSGTNCEININECYSNPCRNGA---KCVDGI- 1297
D+CAS+PCQ GG C+D + Y C C P G NCE + ++ NG C D
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTG 107
Query: 1298 NRYSCECLPGYTGL 1311
+ SC C GY+ L
Sbjct: 108 TKRSCRCHEGYSLL 121
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 27/40 (67%)
Query: 1280 NECYSNPCRNGAKCVDGINRYSCECLPGYTGLHCETNINE 1319
++C S+PC+NG C D + Y C CLP + G +CET+ ++
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 87
Score = 38.5 bits (88), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 76 DHCASSPCRNGAVCTSLEDTYECDCAPGFVGQTC---SEDIIECVDD 119
D CASSPC+NG C +Y C C P F G+ C +D + CV++
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNE 94
Score = 38.5 bits (88), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 187 NECESHPCQNDGSCLDDPGTFRCVCMCEPGYTGQNCESKYVPCDPSPCQNGG---VCREL 243
++C S PCQN GSC D ++ +C C P + G+NCE+ +NGG C +
Sbjct: 48 DQCASSPCQNGGSCKDQLQSY--ICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDH 105
Query: 244 DNLNYECECQSGY 256
C C GY
Sbjct: 106 TGTKRSCRCHEGY 118
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 266 DDCPGNLCQNGATCMDGINKYSCLCLATYTGDLCEQDVDECSIRPSVCHNGA---TCTNS 322
D C + CQNG +C D + Y C CL + G CE D+ I V NG C++
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLI--CVNENGGCEQYCSDH 105
Query: 323 VG-GFSCICVNGWT 335
G SC C G++
Sbjct: 106 TGTKRSCRCHEGYS 119
Score = 35.8 bits (81), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 435 DDCAFKPCRHGGTCIDLVNAYKCVCQVPYTGHDCHQKLD 473
D CA PC++GG+C D + +Y C C + G +C D
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKD 86
Score = 35.8 bits (81), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 868 DDCAFKPCRHGGTCIDLVNAYKCVCQVPYTGHDCHQKLD 906
D CA PC++GG+C D + +Y C C + G +C D
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKD 86
Score = 34.7 bits (78), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 37/72 (51%), Gaps = 7/72 (9%)
Query: 229 CDPSPCQNGGVCRELDNL-NYECECQSGYRGKNCEENIDDCPGNLCQNGA---TCMDGI- 283
C SPCQNGG C+ D L +Y C C + G+NCE + DD + +NG C D
Sbjct: 50 CASSPCQNGGSCK--DQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTG 107
Query: 284 NKYSCLCLATYT 295
K SC C Y+
Sbjct: 108 TKRSCRCHEGYS 119
Score = 34.7 bits (78), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 38 NSCDSFPCMNGGTCTLKSLDRYTCTCAPGFTGSQCE 73
+ C S PC NGG+C L Y C C P F G CE
Sbjct: 48 DQCASSPCQNGGSCK-DQLQSYICFCLPAFEGRNCE 82
Score = 33.9 bits (76), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 152 AGSPCEHDGTCVNTPGSFACNCTQGFTGPRCETNVNECESHPCQNDG---SCLDDPGTFR 208
A SPC++ G+C + S+ C C F G CET+ ++ +N G C D GT R
Sbjct: 51 ASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGTKR 110
Query: 209 CVCMCEPGYT 218
C C GY+
Sbjct: 111 -SCRCHEGYS 119
Score = 32.3 bits (72), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 1056 AGSPCEHDGTCVNTPGSFACNCTQGFTGPRCETNVNECESHPCQNDG---SCLDDPGTFR 1112
A SPC++ G+C + S+ C C F G CET+ ++ +N G C D GT R
Sbjct: 51 ASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGTKR 110
Query: 1113 -CVCMPGFT 1120
C C G++
Sbjct: 111 SCRCHEGYS 119
Score = 32.0 bits (71), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 1432 DDCAFKPCRHGGTCIDLVNAYKCVCAKAGNHR 1463
D CA PC++GG+C D + +Y C C A R
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGR 79
Score = 31.6 bits (70), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 302 DVDECSIRPSVCHNGATCTNSVGGFSCICVNGWTGPDCSLNIDD 345
D D+C+ P C NG +C + + + C C+ + G +C + DD
Sbjct: 46 DGDQCASSP--CQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 87
Score = 30.8 bits (68), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 43/121 (35%), Gaps = 7/121 (5%)
Query: 541 VNNYHCNCRPGYMGRHCEVKDLAVKVTSMNASPTLAPLTVLWIAYNWSXXXXXXXXXXXW 600
N + RPG + R C+ + + + + + WI+Y+
Sbjct: 1 ANAFLEELRPGSLERECKEEQCSFE-EAREIFKDAERTKLFWISYS---DGDQCASSPCQ 56
Query: 601 NGGVCTALDGGHTCICPDNYSGRNCEYFGYDCDSNPCQNGG---FCRSKEGGGYRCDCPP 657
NGG C + C C + GRNCE D +NGG +C G C C
Sbjct: 57 NGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGTKRSCRCHE 116
Query: 658 G 658
G
Sbjct: 117 G 117
Score = 30.8 bits (68), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 344 DDCAGAACFNGATCIDRVGSFYCQCTPGKTGLLCH 378
D CA + C NG +C D++ S+ C C P G C
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCE 82
Score = 30.8 bits (68), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 520 DINECLSNPCSSHGTLDCVQLVNNYHCNCRPGYMGRHCEV 559
D ++C S+PC + G+ C + +Y C C P + GR+CE
Sbjct: 46 DGDQCASSPCQNGGS--CKDQLQSYICFCLPAFEGRNCET 83
Score = 30.8 bits (68), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 1318 NECASNPCANGGVCVDLIDGFKCECPRGYYDARCLSDVDE 1357
++CAS+PC NGG C D + + C C + C + D+
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 87
>pdb|3H5C|B Chain B, X-Ray Structure Of Protein Z-Protein Z Inhibitor Complex
Length = 317
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 1244 CASNPCQFGGQCEDLINGYQCRCKPGTSGTNCEININECYSNPCRNGA---KCVDGINRY 1300
C S PC G C+D I GY C C PG G+NCE+ NEC+ P R C+ G Y
Sbjct: 8 CISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECH--PERTDGCQHFCLPGQESY 65
Query: 1301 SCECLPGY 1308
+C C GY
Sbjct: 66 TCSCAQGY 73
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 1169 CVSSPCHNGGICKDSIAGYTCECLAGFTGMSCETNINDCASNPCH--RGECIDGENSFTC 1226
C+S PC + G C+DSI GYTC C G+ G +CE N+C + C+ G+ S+TC
Sbjct: 8 CISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQHFCLPGQESYTC 67
Query: 1227 ACHPGF 1232
+C G+
Sbjct: 68 SCAQGY 73
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 1358 CASDPCLNGGTCEDGLNQFICHCKPGYGGKRCEFDIDEC---GSNPCQHGGICTDHLNGY 1414
C S PCL+ G+C+D + + C C PGY G CE +EC ++ CQH C Y
Sbjct: 8 CISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQH--FCLPGQESY 65
Query: 1415 TCECQIGY 1422
TC C GY
Sbjct: 66 TCSCAQGY 73
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Query: 1396 CGSNPCQHGGICTDHLNGYTCECQIGYTGINCEINIDDCAFKPCRHGG---TCIDLVNAY 1452
C S PC H G C D + GYTC C GY G NCE+ ++C P R G C+ +Y
Sbjct: 8 CISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNEC--HPERTDGCQHFCLPGQESY 65
Query: 1453 KCVCAKA 1459
C CA+
Sbjct: 66 TCSCAQG 72
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Query: 40 CDSFPCMNGGTCTLKSLDRYTCTCAPGFTGSQCELQDHCASSPCRNG--AVCTSLEDTYE 97
C S PC++ G+C S+ YTCTC+PG+ GS CEL + +G C +++Y
Sbjct: 8 CISQPCLHNGSCQ-DSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQHFCLPGQESYT 66
Query: 98 CDCAPGFVGQTCSEDIIECV 117
C CA G+ ED +CV
Sbjct: 67 CSCAQGY---RLGEDHKQCV 83
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 1282 CYSNPCRNGAKCVDGINRYSCECLPGYTGLHCETNINECASNPCANGG---VCVDLIDGF 1338
C S PC + C D I Y+C C PGY G +CE NEC +P G C+ + +
Sbjct: 8 CISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNEC--HPERTDGCQHFCLPGQESY 65
Query: 1339 KCECPRGY 1346
C C +GY
Sbjct: 66 TCSCAQGY 73
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
Query: 154 SPCEHDGTCVNTPGSFACNCTQGFTGPRCETNVNECESHPCQNDG---SCLDDPGTFRCV 210
PC H+G+C ++ + C C+ G+ G CE NEC HP + DG CL PG
Sbjct: 11 QPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNEC--HPERTDGCQHFCL--PGQESYT 66
Query: 211 CMCEPGYTGQNCESKYVPCDPSPC 234
C C GY + VP D C
Sbjct: 67 CSCAQGYRLGEDHKQCVPHDQCAC 90
Score = 40.4 bits (93), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 1131 CASNPCLNGGICNDLINTFKCACPIGFTGSHCQINIDDCVSSPCHNGG---ICKDSIAGY 1187
C S PCL+ G C D I + C C G+ GS+C++ ++C P G C Y
Sbjct: 8 CISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNEC--HPERTDGCQHFCLPGQESY 65
Query: 1188 TCECLAGF 1195
TC C G+
Sbjct: 66 TCSCAQGY 73
Score = 39.7 bits (91), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 21/34 (61%)
Query: 672 CYSNPCQHAGTCEDRIADYACYCLPMWNGKNCDL 705
C S PC H G+C+D I Y C C P + G NC+L
Sbjct: 8 CISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCEL 41
Score = 38.1 bits (87), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 31/72 (43%), Gaps = 8/72 (11%)
Query: 189 CESHPCQNDGSCLDDPGTFRCVCMCEPGYTGQNCESKYVPCDPSPCQNGGVCREL---DN 245
C S PC ++GSC D + C C PGY G NCE C P C+
Sbjct: 8 CISQPCLHNGSCQDSIWGY--TCTCSPGYEGSNCELAKNECHPERTDG---CQHFCLPGQ 62
Query: 246 LNYECECQSGYR 257
+Y C C GYR
Sbjct: 63 ESYTCSCAQGYR 74
Score = 38.1 bits (87), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 10/82 (12%)
Query: 870 CAFKPCRHGGTCIDLVNAYKCVCQVPYTGHDCHQKLDPCVPNR---CQHGARCTPSANFQ 926
C +PC H G+C D + Y C C Y G +C + C P R CQH C P +
Sbjct: 8 CISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQH--FCLPGQ--E 63
Query: 927 DFACHCGVGWTGRYCNEDVDEC 948
+ C C G+ ED +C
Sbjct: 64 SYTCSCAQGYR---LGEDHKQC 82
Score = 37.7 bits (86), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 23/39 (58%)
Query: 1093 CESHPCQNDGSCLDDPGTFRCVCMPGFTGTQCETDIDEC 1131
C S PC ++GSC D + C C PG+ G+ CE +EC
Sbjct: 8 CISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNEC 46
Score = 37.4 bits (85), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 987 CASFPCQNGGTCLDEVGDYSCLCVDGFSGKHCEVDIDEC 1025
C S PC + G+C D + Y+C C G+ G +CE+ +EC
Sbjct: 8 CISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNEC 46
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 950 LSSPCRNGATCHNTNGSYLCECAKGYEGRDCLINTDDCASFPCQNGG---TCLDEVGDYS 1006
+S PC + +C ++ Y C C+ GYEG +C + ++C P + G CL Y+
Sbjct: 9 ISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNEC--HPERTDGCQHFCLPGQESYT 66
Query: 1007 CLCVDGF 1013
C C G+
Sbjct: 67 CSCAQGY 73
Score = 36.2 bits (82), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 5/54 (9%)
Query: 629 GYDCDSNPCQNGGFCRSKEGGGYRCDCPPGATGTHCELDSRNECY---SNPCQH 679
G C S PC + G C+ G Y C C PG G++CEL ++NEC+ ++ CQH
Sbjct: 5 GSPCISQPCLHNGSCQDSIWG-YTCTCSPGYEGSNCEL-AKNECHPERTDGCQH 56
Score = 35.0 bits (79), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 10/82 (12%)
Query: 346 CAGAACFNGATCIDRVGSFYCQCTPGKTGLLCHLEDACTSNPCHADAICDTNPI-ING-- 402
C C + +C D + + C C+PG G C L N CH + + G
Sbjct: 8 CISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCEL----AKNECHPERTDGCQHFCLPGQE 63
Query: 403 SYTCSCASGYKGVNCSEDINEC 424
SYTCSCA GY+ ED +C
Sbjct: 64 SYTCSCAQGYR---LGEDHKQC 82
Score = 34.7 bits (78), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Query: 228 PCDPSPCQNGGVCRELDNLNYECECQSGYRGKNCEENIDDCPGNL---CQNGATCMDGIN 284
PC PC + G C++ Y C C GY G NCE ++C CQ+ C+ G
Sbjct: 7 PCISQPCLHNGSCQD-SIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQH--FCLPGQE 63
Query: 285 KYSCLCLATY 294
Y+C C Y
Sbjct: 64 SYTCSCAQGY 73
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 1207 CASNPC-HRGECIDGENSFTCACHPGFTGALCNTQLDEC 1244
C S PC H G C D +TC C PG+ G+ C +EC
Sbjct: 8 CISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNEC 46
Score = 32.7 bits (73), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 1662 CLPGACHNNGTCVDKVGGFECRCPPGFVGS 1691
C+ C +NG+C D + G+ C C PG+ GS
Sbjct: 8 CISQPCLHNGSCQDSIWGYTCTCSPGYEGS 37
Score = 32.3 bits (72), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 437 CAFKPCRHGGTCIDLVNAYKCVCQVPYTGHDCHQKLDPCVPN 478
C +PC H G+C D + Y C C Y G +C + C P
Sbjct: 8 CISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPE 49
Score = 32.0 bits (71), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 42/100 (42%), Gaps = 18/100 (18%)
Query: 383 CTSNPCHADAICDTNPIINGSYTCSCASGYKGVNCSEDINECEQGINCEINIDDCAFKPC 442
C S PC + C + I G YTC+C+ GY+G NC NEC D C
Sbjct: 8 CISQPCLHNGSCQDS--IWG-YTCTCSPGYEGSNCELAKNECHPE-----RTDGCQH--- 56
Query: 443 RHGGTCIDLVNAYKCVCQVPYTGHDCHQKLDPCVPNSACV 482
C+ +Y C C Y + H++ CVP+ C
Sbjct: 57 ----FCLPGQESYTCSCAQGYRLGEDHKQ---CVPHDQCA 89
>pdb|1DVA|L Chain L, Crystal Structure Of The Complex Between The Peptide Exosite
Inhibitor E-76 And Coagulation Factor Viia
pdb|1DVA|M Chain M, Crystal Structure Of The Complex Between The Peptide Exosite
Inhibitor E-76 And Coagulation Factor Viia
Length = 101
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 8/88 (9%)
Query: 1353 SDVDECASDPCLNGGTCEDGLNQFICHCKPGYGGKRCEFDIDECGSNPCQHGG---ICTD 1409
SD D+CAS PC NGG+C+D L +IC C P + G+ CE D+ ++GG C+D
Sbjct: 4 SDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSD 63
Query: 1410 HL-NGYTCECQIGYT----GINCEINID 1432
H +C C GY+ G++C ++
Sbjct: 64 HTGTKRSCRCHEGYSLLADGVSCTPTVE 91
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 26/40 (65%)
Query: 1167 DDCVSSPCHNGGICKDSIAGYTCECLAGFTGMSCETNIND 1206
D C SSPC NGG CKD + Y C CL F G +CET+ +D
Sbjct: 7 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 46
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 985 DDCASFPCQNGGTCLDEVGDYSCLCVDGFSGKHCEVDIDE 1024
D CAS PCQNGG+C D++ Y C C+ F G++CE D+
Sbjct: 7 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 46
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 29/37 (78%)
Query: 670 NECYSNPCQHAGTCEDRIADYACYCLPMWNGKNCDLY 706
++C S+PCQ+ G+C+D++ Y C+CLP + G+NC+ +
Sbjct: 7 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETH 43
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 8/88 (9%)
Query: 1126 TDIDECASNPCLNGGICNDLINTFKCACPIGFTGSHCQINIDDCVSSPCHNGG---ICKD 1182
+D D+CAS+PC NGG C D + ++ C C F G +C+ + DD + NGG C D
Sbjct: 4 SDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSD 63
Query: 1183 SIA-GYTCECLAGFT----GMSCETNIN 1205
+C C G++ G+SC +
Sbjct: 64 HTGTKRSCRCHEGYSLLADGVSCTPTVE 91
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Query: 944 DVDECQLSSPCRNGATCHNTNGSYLCECAKGYEGRDCLINTDDCASFPCQNGG---TCLD 1000
D D+C SSPC+NG +C + SY+C C +EGR+C + DD +NGG C D
Sbjct: 5 DGDQC-ASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSD 63
Query: 1001 EVG-DYSCLCVDGFS 1014
G SC C +G+S
Sbjct: 64 HTGTKRSCRCHEGYS 78
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 26/42 (61%)
Query: 1392 DIDECGSNPCQHGGICTDHLNGYTCECQIGYTGINCEINIDD 1433
D D+C S+PCQ+GG C D L Y C C + G NCE + DD
Sbjct: 5 DGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 46
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 1242 DECASNPCQFGGQCEDLINGYQCRCKPGTSGTNCEININECYSNPCRNGA---KCVDGI- 1297
D+CAS+PCQ GG C+D + Y C C P G NCE + ++ NG C D
Sbjct: 7 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTG 66
Query: 1298 NRYSCECLPGYTGL 1311
+ SC C GY+ L
Sbjct: 67 TKRSCRCHEGYSLL 80
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 1091 NECESHPCQNDGSCLDDPGTFRCVCMPGFTGTQCETDIDECASNPCLNGG---ICNDLIN 1147
++C S PCQN GSC D ++ C C+P F G CET D+ NGG C+D
Sbjct: 7 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTG 66
Query: 1148 TFK-CACPIGFT 1158
T + C C G++
Sbjct: 67 TKRSCRCHEGYS 78
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 27/40 (67%)
Query: 1280 NECYSNPCRNGAKCVDGINRYSCECLPGYTGLHCETNINE 1319
++C S+PC+NG C D + Y C CLP + G +CET+ ++
Sbjct: 7 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 46
Score = 38.1 bits (87), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 187 NECESHPCQNDGSCLDDPGTFRCVCMCEPGYTGQNCESKYVPCDPSPCQNGG---VCREL 243
++C S PCQN GSC D ++ +C C P + G+NCE+ +NGG C +
Sbjct: 7 DQCASSPCQNGGSCKDQLQSY--ICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDH 64
Query: 244 DNLNYECECQSGY 256
C C GY
Sbjct: 65 TGTKRSCRCHEGY 77
Score = 38.1 bits (87), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 76 DHCASSPCRNGAVCTSLEDTYECDCAPGFVGQTC---SEDIIECVDD 119
D CASSPC+NG C +Y C C P F G+ C +D + CV++
Sbjct: 7 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNE 53
Score = 35.8 bits (81), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 266 DDCPGNLCQNGATCMDGINKYSCLCLATYTGDLCEQDVDE 305
D C + CQNG +C D + Y C CL + G CE D+
Sbjct: 7 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 46
Score = 35.0 bits (79), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 435 DDCAFKPCRHGGTCIDLVNAYKCVCQVPYTGHDCHQKLD 473
D CA PC++GG+C D + +Y C C + G +C D
Sbjct: 7 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKD 45
Score = 35.0 bits (79), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 868 DDCAFKPCRHGGTCIDLVNAYKCVCQVPYTGHDCHQKLD 906
D CA PC++GG+C D + +Y C C + G +C D
Sbjct: 7 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKD 45
Score = 34.7 bits (78), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Query: 229 CDPSPCQNGGVCRELDNL-NYECECQSGYRGKNCEENIDD 267
C SPCQNGG C+ D L +Y C C + G+NCE + DD
Sbjct: 9 CASSPCQNGGSCK--DQLQSYICFCLPAFEGRNCETHKDD 46
Score = 34.3 bits (77), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 37 ANSCDSFPCMNGGTCTLKSLDRYTCTCAPGFTGSQCE 73
+ C S PC NGG+C L Y C C P F G CE
Sbjct: 6 GDQCASSPCQNGGSCK-DQLQSYICFCLPAFEGRNCE 41
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 152 AGSPCEHDGTCVNTPGSFACNCTQGFTGPRCETNVNECESHPCQNDG---SCLDDPGTFR 208
A SPC++ G+C + S+ C C F G CET+ ++ +N G C D GT R
Sbjct: 10 ASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGTKR 69
Query: 209 CVCMCEPGYT 218
C C GY+
Sbjct: 70 -SCRCHEGYS 78
Score = 32.0 bits (71), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 1056 AGSPCEHDGTCVNTPGSFACNCTQGFTGPRCETNVNECESHPCQNDG---SCLDDPGTFR 1112
A SPC++ G+C + S+ C C F G CET+ ++ +N G C D GT R
Sbjct: 10 ASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGTKR 69
Query: 1113 -CVCMPGFT 1120
C C G++
Sbjct: 70 SCRCHEGYS 78
Score = 32.0 bits (71), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 1432 DDCAFKPCRHGGTCIDLVNAYKCVCAKAGNHR 1463
D CA PC++GG+C D + +Y C C A R
Sbjct: 7 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGR 38
Score = 30.8 bits (68), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 1318 NECASNPCANGGVCVDLIDGFKCECPRGYYDARCLSDVDE 1357
++CAS+PC NGG C D + + C C + C + D+
Sbjct: 7 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 46
Score = 30.8 bits (68), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 302 DVDECSIRPSVCHNGATCTNSVGGFSCICVNGWTGPDCSLNIDD 345
D D+C+ P C NG +C + + + C C+ + G +C + DD
Sbjct: 5 DGDQCASSP--CQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 46
>pdb|1EDM|B Chain B, Epidermal Growth Factor-Like Domain From Human Factor Ix
pdb|1EDM|C Chain C, Epidermal Growth Factor-Like Domain From Human Factor Ix
pdb|1IXA|A Chain A, The Three-Dimensional Structure Of The First Egf-Like Module
Of Human Factor Ix: Comparison With Egf And Tgf-A
Length = 39
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 29/39 (74%)
Query: 1126 TDIDECASNPCLNGGICNDLINTFKCACPIGFTGSHCQI 1164
D D+C SNPCLNGG C D IN+++C CP GF G +C++
Sbjct: 1 VDGDQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCEL 39
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 27/38 (71%)
Query: 1354 DVDECASDPCLNGGTCEDGLNQFICHCKPGYGGKRCEF 1391
D D+C S+PCLNGG+C+D +N + C C G+ GK CE
Sbjct: 2 DGDQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCEL 39
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 25/38 (65%)
Query: 1392 DIDECGSNPCQHGGICTDHLNGYTCECQIGYTGINCEI 1429
D D+C SNPC +GG C D +N Y C C G+ G NCE+
Sbjct: 2 DGDQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCEL 39
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 26/39 (66%)
Query: 982 INTDDCASFPCQNGGTCLDEVGDYSCLCVDGFSGKHCEV 1020
++ D C S PC NGG+C D++ Y C C GF GK+CE+
Sbjct: 1 VDGDQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCEL 39
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 24/36 (66%)
Query: 1242 DECASNPCQFGGQCEDLINGYQCRCKPGTSGTNCEI 1277
D+C SNPC GG C+D IN Y+C C G G NCE+
Sbjct: 4 DQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCEL 39
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 24/38 (63%)
Query: 1164 INIDDCVSSPCHNGGICKDSIAGYTCECLAGFTGMSCE 1201
++ D C S+PC NGG CKD I Y C C GF G +CE
Sbjct: 1 VDGDQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCE 38
Score = 39.3 bits (90), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 24/38 (63%)
Query: 1277 ININECYSNPCRNGAKCVDGINRYSCECLPGYTGLHCE 1314
++ ++C SNPC NG C D IN Y C C G+ G +CE
Sbjct: 1 VDGDQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCE 38
Score = 38.5 bits (88), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 23/35 (65%)
Query: 1091 NECESHPCQNDGSCLDDPGTFRCVCMPGFTGTQCE 1125
++CES+PC N GSC DD ++ C C GF G CE
Sbjct: 4 DQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCE 38
Score = 38.5 bits (88), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 670 NECYSNPCQHAGTCEDRIADYACYCLPMWNGKNCDL 705
++C SNPC + G+C+D I Y C+C + GKNC+L
Sbjct: 4 DQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCEL 39
Score = 36.6 bits (83), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 1318 NECASNPCANGGVCVDLIDGFKCECPRGYYDARC 1351
++C SNPC NGG C D I+ ++C CP G+ C
Sbjct: 4 DQCESNPCLNGGSCKDDINSYECWCPFGFEGKNC 37
Score = 35.8 bits (81), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 37 ANSCDSFPCMNGGTCTLKSLDRYTCTCAPGFTGSQCEL 74
+ C+S PC+NGG+C ++ Y C C GF G CEL
Sbjct: 3 GDQCESNPCLNGGSCK-DDINSYECWCPFGFEGKNCEL 39
Score = 35.4 bits (80), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Query: 187 NECESHPCQNDGSCLDDPGTFRCVCMCEPGYTGQNCE 223
++CES+PC N GSC DD ++ C C G+ G+NCE
Sbjct: 4 DQCESNPCLNGGSCKDDINSYE--CWCPFGFEGKNCE 38
Score = 35.4 bits (80), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 432 INIDDCAFKPCRHGGTCIDLVNAYKCVCQVPYTGHDCH 469
++ D C PC +GG+C D +N+Y+C C + G +C
Sbjct: 1 VDGDQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCE 38
Score = 35.4 bits (80), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 865 INIDDCAFKPCRHGGTCIDLVNAYKCVCQVPYTGHDCH 902
++ D C PC +GG+C D +N+Y+C C + G +C
Sbjct: 1 VDGDQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCE 38
Score = 35.0 bits (79), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Query: 229 CDPSPCQNGGVCRELDNLNYECECQSGYRGKNCE 262
C+ +PC NGG C++ D +YEC C G+ GKNCE
Sbjct: 6 CESNPCLNGGSCKD-DINSYECWCPFGFEGKNCE 38
Score = 34.3 bits (77), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 944 DVDECQLSSPCRNGATCHNTNGSYLCECAKGYEGRDCLI 982
D D+C+ S+PC NG +C + SY C C G+EG++C +
Sbjct: 2 DGDQCE-SNPCLNGGSCKDDINSYECWCPFGFEGKNCEL 39
Score = 34.3 bits (77), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 629 GYDCDSNPCQNGGFCRSKEGGGYRCDCPPGATGTHCEL 666
G C+SNPC NGG C+ + Y C CP G G +CEL
Sbjct: 3 GDQCESNPCLNGGSCKD-DINSYECWCPFGFEGKNCEL 39
Score = 34.3 bits (77), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 76 DHCASSPCRNGAVCTSLEDTYECDCAPGFVGQTCS 110
D C S+PC NG C ++YEC C GF G+ C
Sbjct: 4 DQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCE 38
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 18/35 (51%)
Query: 266 DDCPGNLCQNGATCMDGINKYSCLCLATYTGDLCE 300
D C N C NG +C D IN Y C C + G CE
Sbjct: 4 DQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCE 38
Score = 31.6 bits (70), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 520 DINECLSNPCSSHGTLDCVQLVNNYHCNCRPGYMGRHCEV 559
D ++C SNPC + G+ C +N+Y C C G+ G++CE+
Sbjct: 2 DGDQCESNPCLNGGS--CKDDINSYECWCPFGFEGKNCEL 39
>pdb|1X7A|L Chain L, Porcine Factor Ixa Complexed To 1-{3-[amino(Imino)
Methyl]phenyl}-N-[4-(1h-Benzimidazol-1-Yl)-2-
Fluorophenyl]-
3-(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide
Length = 146
Score = 50.8 bits (120), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 30/40 (75%)
Query: 1126 TDIDECASNPCLNGGICNDLINTFKCACPIGFTGSHCQIN 1165
D D+C NPCLNGG+C D IN+++C C +GF G +C+++
Sbjct: 46 VDGDQCEPNPCLNGGLCKDDINSYECWCQVGFEGKNCELD 85
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 28/39 (71%)
Query: 1392 DIDECGSNPCQHGGICTDHLNGYTCECQIGYTGINCEIN 1430
D D+C NPC +GG+C D +N Y C CQ+G+ G NCE++
Sbjct: 47 DGDQCEPNPCLNGGLCKDDINSYECWCQVGFEGKNCELD 85
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 27/39 (69%)
Query: 1354 DVDECASDPCLNGGTCEDGLNQFICHCKPGYGGKRCEFD 1392
D D+C +PCLNGG C+D +N + C C+ G+ GK CE D
Sbjct: 47 DGDQCEPNPCLNGGLCKDDINSYECWCQVGFEGKNCELD 85
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 25/40 (62%)
Query: 982 INTDDCASFPCQNGGTCLDEVGDYSCLCVDGFSGKHCEVD 1021
++ D C PC NGG C D++ Y C C GF GK+CE+D
Sbjct: 46 VDGDQCEPNPCLNGGLCKDDINSYECWCQVGFEGKNCELD 85
Score = 43.9 bits (102), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 1164 INIDDCVSSPCHNGGICKDSIAGYTCECLAGFTGMSCETNINDCASNPCHRGECIDGENS 1223
++ D C +PC NGG+CKD I Y C C GF G +CE + N + C G +S
Sbjct: 46 VDGDQCEPNPCLNGGLCKDDINSYECWCQVGFEGKNCELDATCNIKNGRCKQFCKTGADS 105
Query: 1224 -FTCACHPGFTGA 1235
C+C G+ A
Sbjct: 106 KVLCSCTTGYRLA 118
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/35 (60%), Positives = 28/35 (80%), Gaps = 3/35 (8%)
Query: 229 CDPSPCQNGGVCRELDNLN-YECECQSGYRGKNCE 262
C+P+PC NGG+C+ D++N YEC CQ G+ GKNCE
Sbjct: 51 CEPNPCLNGGLCK--DDINSYECWCQVGFEGKNCE 83
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 25/37 (67%)
Query: 1242 DECASNPCQFGGQCEDLINGYQCRCKPGTSGTNCEIN 1278
D+C NPC GG C+D IN Y+C C+ G G NCE++
Sbjct: 49 DQCEPNPCLNGGLCKDDINSYECWCQVGFEGKNCELD 85
Score = 39.7 bits (91), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 862 QQPINIDDCAFKPCRHGGTCIDLVNAYKCVCQVPYTGHDCH 902
+Q ++ D C PC +GG C D +N+Y+C CQV + G +C
Sbjct: 43 KQYVDGDQCEPNPCLNGGLCKDDINSYECWCQVGFEGKNCE 83
Score = 38.1 bits (87), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 432 INIDDCAFKPCRHGGTCIDLVNAYKCVCQVPYTGHDCH 469
++ D C PC +GG C D +N+Y+C CQV + G +C
Sbjct: 46 VDGDQCEPNPCLNGGLCKDDINSYECWCQVGFEGKNCE 83
Score = 38.1 bits (87), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 22/37 (59%)
Query: 1091 NECESHPCQNDGSCLDDPGTFRCVCMPGFTGTQCETD 1127
++CE +PC N G C DD ++ C C GF G CE D
Sbjct: 49 DQCEPNPCLNGGLCKDDINSYECWCQVGFEGKNCELD 85
Score = 37.4 bits (85), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 28/70 (40%), Gaps = 2/70 (2%)
Query: 344 DDCAGAACFNGATCIDRVGSFYCQCTPGKTGLLCHLEDACTSNPCHADAICDTNPIINGS 403
D C C NG C D + S+ C C G G C L+ C C T +
Sbjct: 49 DQCEPNPCLNGGLCKDDINSYECWCQVGFEGKNCELDATCNIKNGRCKQFCKTG--ADSK 106
Query: 404 YTCSCASGYK 413
CSC +GY+
Sbjct: 107 VLCSCTTGYR 116
Score = 37.4 bits (85), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 670 NECYSNPCQHAGTCEDRIADYACYCLPMWNGKNCDL 705
++C NPC + G C+D I Y C+C + GKNC+L
Sbjct: 49 DQCEPNPCLNGGLCKDDINSYECWCQVGFEGKNCEL 84
Score = 36.2 bits (82), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
Query: 266 DDCPGNLCQNGATCMDGINKYSCLCLATYTGDLCEQDVDECSIRPSVCHNGATCTNSVGG 325
D C N C NG C D IN Y C C + G CE D C+I+ C T +
Sbjct: 49 DQCEPNPCLNGGLCKDDINSYECWCQVGFEGKNCELDAT-CNIKNGRCKQFCK-TGADSK 106
Query: 326 FSCICVNGWT-GPD 338
C C G+ PD
Sbjct: 107 VLCSCTTGYRLAPD 120
Score = 35.8 bits (81), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Query: 37 ANSCDSFPCMNGGTCTLKSLDRYTCTCAPGFTGSQCELQDHCASSPCRNGAVCTSLEDT- 95
+ C+ PC+NGG C ++ Y C C GF G CEL C R C + D+
Sbjct: 48 GDQCEPNPCLNGGLCK-DDINSYECWCQVGFEGKNCELDATCNIKNGRCKQFCKTGADSK 106
Query: 96 YECDCAPGF 104
C C G+
Sbjct: 107 VLCSCTTGY 115
Score = 35.4 bits (80), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 187 NECESHPCQNDGSCLDDPGTFRCVCMCEPGYTGQNCESKYVPCDPSPCQNGGVCRELDNL 246
++CE +PC N G C DD ++ C C+ G+ G+NCE C+ + C+ +
Sbjct: 49 DQCEPNPCLNGGLCKDDINSYE--CWCQVGFEGKNCELD-ATCNIKNGRCKQFCKTGADS 105
Query: 247 NYECECQSGYR 257
C C +GYR
Sbjct: 106 KVLCSCTTGYR 116
Score = 34.7 bits (78), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 76 DHCASSPCRNGAVCTSLEDTYECDCAPGFVGQTCSED 112
D C +PC NG +C ++YEC C GF G+ C D
Sbjct: 49 DQCEPNPCLNGGLCKDDINSYECWCQVGFEGKNCELD 85
Score = 34.7 bits (78), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 629 GYDCDSNPCQNGGFCRSKEGGGYRCDCPPGATGTHCELDS 668
G C+ NPC NGG C+ + Y C C G G +CELD+
Sbjct: 48 GDQCEPNPCLNGGLCKD-DINSYECWCQVGFEGKNCELDA 86
Score = 34.3 bits (77), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 1318 NECASNPCANGGVCVDLIDGFKCECPRGYYDARCLSDV 1355
++C NPC NGG+C D I+ ++C C G+ C D
Sbjct: 49 DQCEPNPCLNGGLCKDDINSYECWCQVGFEGKNCELDA 86
Score = 32.3 bits (72), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 944 DVDECQLSSPCRNGATCHNTNGSYLCECAKGYEGRDCLINT 984
D D+C+ +PC NG C + SY C C G+EG++C ++
Sbjct: 47 DGDQCE-PNPCLNGGLCKDDINSYECWCQVGFEGKNCELDA 86
Score = 32.0 bits (71), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 1618 HGGICTDHLNGYTCECQIGYTGGYISLNMS 1647
+GG+C D +N Y C CQ+G+ G L+ +
Sbjct: 58 NGGLCKDDINSYECWCQVGFEGKNCELDAT 87
Score = 31.6 bits (70), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 24/48 (50%)
Query: 295 TGDLCEQDVDECSIRPSVCHNGATCTNSVGGFSCICVNGWTGPDCSLN 342
T + +Q VD P+ C NG C + + + C C G+ G +C L+
Sbjct: 38 TNEFWKQYVDGDQCEPNPCLNGGLCKDDINSYECWCQVGFEGKNCELD 85
Score = 30.8 bits (68), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 27/82 (32%)
Query: 1429 INIDDCAFKPCRHGGTCIDLVNAYKCVCAKAGNHRCDDECNTIACHFDGNDCSLGINPWI 1488
++ D C PC +GG C D +N+Y+C C F+G +C L
Sbjct: 46 VDGDQCEPNPCLNGGLCKDDINSYECWCQVG---------------FEGKNCEL------ 84
Query: 1489 NCTANINCWEVFMNGRCDEVCN 1510
+ T NI NGRC + C
Sbjct: 85 DATCNIK------NGRCKQFCK 100
Score = 30.8 bits (68), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 35/91 (38%), Gaps = 11/91 (12%)
Query: 906 DPCVPNRCQHGARCTPSANFQDFACHCGVGWTGRYCNED----VDECQLSSPCRNGATCH 961
D C PN C +G C N + C C VG+ G+ C D + + C+ GA
Sbjct: 49 DQCEPNPCLNGGLCKDDIN--SYECWCQVGFEGKNCELDATCNIKNGRCKQFCKTGA--- 103
Query: 962 NTNGSYLCECAKGYEGRDCLINTDDCASFPC 992
+ LC C GY + FPC
Sbjct: 104 --DSKVLCSCTTGYRLAPDQKSCKPAVPFPC 132
Score = 30.4 bits (67), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 8/62 (12%)
Query: 498 VYRTERMVIDFGMKHIGSRCEGDINECLSNPCSSHGTLDCVQLVNNYHCNCRPGYMGRHC 557
V+ +F +++ D ++C NPC + G C +N+Y C C+ G+ G++C
Sbjct: 31 VFENTEKTNEFWKQYV------DGDQCEPNPCLNGGL--CKDDINSYECWCQVGFEGKNC 82
Query: 558 EV 559
E+
Sbjct: 83 EL 84
>pdb|1J9C|L Chain L, Crystal Structure Of Tissue Factor-Factor Viia Complex
Length = 95
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 8/85 (9%)
Query: 1356 DECASDPCLNGGTCEDGLNQFICHCKPGYGGKRCEFDIDECGSNPCQHGG---ICTDHL- 1411
D+CAS PC NGG+C+D L +IC C P + G+ CE D+ ++GG C+DH
Sbjct: 1 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTG 60
Query: 1412 NGYTCECQIGYT----GINCEINID 1432
+C C GY+ G++C ++
Sbjct: 61 TKRSCRCHEGYSLLADGVSCTPTVE 85
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 26/40 (65%)
Query: 1167 DDCVSSPCHNGGICKDSIAGYTCECLAGFTGMSCETNIND 1206
D C SSPC NGG CKD + Y C CL F G +CET+ +D
Sbjct: 1 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 40
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 985 DDCASFPCQNGGTCLDEVGDYSCLCVDGFSGKHCEVDIDE 1024
D CAS PCQNGG+C D++ Y C C+ F G++CE D+
Sbjct: 1 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 40
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 29/37 (78%)
Query: 670 NECYSNPCQHAGTCEDRIADYACYCLPMWNGKNCDLY 706
++C S+PCQ+ G+C+D++ Y C+CLP + G+NC+ +
Sbjct: 1 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETH 37
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 8/85 (9%)
Query: 1129 DECASNPCLNGGICNDLINTFKCACPIGFTGSHCQINIDDCVSSPCHNGG---ICKDSIA 1185
D+CAS+PC NGG C D + ++ C C F G +C+ + DD + NGG C D
Sbjct: 1 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTG 60
Query: 1186 -GYTCECLAGFT----GMSCETNIN 1205
+C C G++ G+SC +
Sbjct: 61 TKRSCRCHEGYSLLADGVSCTPTVE 85
Score = 43.9 bits (102), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 25/40 (62%)
Query: 1394 DECGSNPCQHGGICTDHLNGYTCECQIGYTGINCEINIDD 1433
D+C S+PCQ+GG C D L Y C C + G NCE + DD
Sbjct: 1 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 40
Score = 43.9 bits (102), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Query: 951 SSPCRNGATCHNTNGSYLCECAKGYEGRDCLINTDDCASFPCQNGG---TCLDEVG-DYS 1006
SSPC+NG +C + SY+C C +EGR+C + DD +NGG C D G S
Sbjct: 5 SSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGTKRS 64
Query: 1007 CLCVDGFS 1014
C C +G+S
Sbjct: 65 CRCHEGYS 72
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 1242 DECASNPCQFGGQCEDLINGYQCRCKPGTSGTNCEININECYSNPCRNGA---KCVDGI- 1297
D+CAS+PCQ GG C+D + Y C C P G NCE + ++ NG C D
Sbjct: 1 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTG 60
Query: 1298 NRYSCECLPGYTGL 1311
+ SC C GY+ L
Sbjct: 61 TKRSCRCHEGYSLL 74
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 1091 NECESHPCQNDGSCLDDPGTFRCVCMPGFTGTQCETDIDECASNPCLNGG---ICNDLIN 1147
++C S PCQN GSC D ++ C C+P F G CET D+ NGG C+D
Sbjct: 1 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTG 60
Query: 1148 TFK-CACPIGFT 1158
T + C C G++
Sbjct: 61 TKRSCRCHEGYS 72
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 27/40 (67%)
Query: 1280 NECYSNPCRNGAKCVDGINRYSCECLPGYTGLHCETNINE 1319
++C S+PC+NG C D + Y C CLP + G +CET+ ++
Sbjct: 1 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 40
Score = 38.1 bits (87), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 187 NECESHPCQNDGSCLDDPGTFRCVCMCEPGYTGQNCESKYVPCDPSPCQNGG---VCREL 243
++C S PCQN GSC D ++ +C C P + G+NCE+ +NGG C +
Sbjct: 1 DQCASSPCQNGGSCKDQLQSY--ICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDH 58
Query: 244 DNLNYECECQSGY 256
C C GY
Sbjct: 59 TGTKRSCRCHEGY 71
Score = 38.1 bits (87), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 76 DHCASSPCRNGAVCTSLEDTYECDCAPGFVGQTC---SEDIIECVDD 119
D CASSPC+NG C +Y C C P F G+ C +D + CV++
Sbjct: 1 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNE 47
Score = 35.8 bits (81), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 266 DDCPGNLCQNGATCMDGINKYSCLCLATYTGDLCEQDVDE 305
D C + CQNG +C D + Y C CL + G CE D+
Sbjct: 1 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 40
Score = 35.0 bits (79), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 435 DDCAFKPCRHGGTCIDLVNAYKCVCQVPYTGHDCHQKLD 473
D CA PC++GG+C D + +Y C C + G +C D
Sbjct: 1 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKD 39
Score = 35.0 bits (79), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 868 DDCAFKPCRHGGTCIDLVNAYKCVCQVPYTGHDCHQKLD 906
D CA PC++GG+C D + +Y C C + G +C D
Sbjct: 1 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKD 39
Score = 34.7 bits (78), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Query: 229 CDPSPCQNGGVCRELDNL-NYECECQSGYRGKNCEENIDD 267
C SPCQNGG C+ D L +Y C C + G+NCE + DD
Sbjct: 3 CASSPCQNGGSCK--DQLQSYICFCLPAFEGRNCETHKDD 40
Score = 34.3 bits (77), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 38 NSCDSFPCMNGGTCTLKSLDRYTCTCAPGFTGSQCE 73
+ C S PC NGG+C L Y C C P F G CE
Sbjct: 1 DQCASSPCQNGGSCK-DQLQSYICFCLPAFEGRNCE 35
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 152 AGSPCEHDGTCVNTPGSFACNCTQGFTGPRCETNVNECESHPCQNDG---SCLDDPGTFR 208
A SPC++ G+C + S+ C C F G CET+ ++ +N G C D GT R
Sbjct: 4 ASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGTKR 63
Query: 209 CVCMCEPGYT 218
C C GY+
Sbjct: 64 -SCRCHEGYS 72
Score = 32.0 bits (71), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 1056 AGSPCEHDGTCVNTPGSFACNCTQGFTGPRCETNVNECESHPCQNDG---SCLDDPGTFR 1112
A SPC++ G+C + S+ C C F G CET+ ++ +N G C D GT R
Sbjct: 4 ASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGTKR 63
Query: 1113 -CVCMPGFT 1120
C C G++
Sbjct: 64 SCRCHEGYS 72
Score = 31.6 bits (70), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 1432 DDCAFKPCRHGGTCIDLVNAYKCVCAKAGNHR 1463
D CA PC++GG+C D + +Y C C A R
Sbjct: 1 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGR 32
Score = 30.8 bits (68), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 1318 NECASNPCANGGVCVDLIDGFKCECPRGYYDARCLSDVDE 1357
++CAS+PC NGG C D + + C C + C + D+
Sbjct: 1 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 40
>pdb|1EZQ|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr128515
pdb|1F0R|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208815
pdb|1F0S|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208707
pdb|1KSN|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Fxv673
pdb|1NFW|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr209685
pdb|1NFX|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208944
pdb|1NFY|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr200095
pdb|1LPG|A Chain A, Crystal Structure Of Fxa In Complex With 79.
pdb|1LPK|A Chain A, Crystal Structure Of Fxa In Complex With 125.
pdb|1LPZ|A Chain A, Crystal Structure Of Fxa In Complex With 41.
pdb|1LQD|A Chain A, Crystal Structure Of Fxa In Complex With 45.
pdb|2BOH|A Chain A, Crystal Structure Of Factor Xa In Complex With Compound "1"
pdb|2CJI|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J2U|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J34|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J38|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J4I|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J94|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J95|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2UWL|B Chain B, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWO|B Chain B, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWP|B Chain B, Factor Xa Inhibitor Complex
pdb|2VH0|B Chain B, Structure And Property Based Design Of Factor Xa Inhibitors:
Biaryl Pyrrolidin-2-Ones Incorporating Basic Heterocyclic
Motifs
pdb|2VH6|B Chain B, Structure And Property Based Design Of Factor Xa Inhibitors:
Pyrrolidin-2-Ones With Biaryl P4 Motifs
pdb|2WYG|B Chain B, Structure And Property Based Design Of Factor Xa Inhibitors:
Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2WYJ|B Chain B, Structure And Property Based Design Of Factor Xa Inhibitors:
Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2Y7X|B Chain B, The Discovery Of Potent And Long-Acting Oral Factor Xa
Inhibitors With Tetrahydroisoquinoline And Benzazepine P4
Motifs
pdb|2Y7Z|B Chain B, Structure And Property Based Design Of Factor Xa Inhibitors:
Pyrrolidin-2-Ones With Aminoindane And Phenylpyrrolidine
P4 Motifs
pdb|2Y80|B Chain B, Structure And Property Based Design Of Factor Xa Inhibitors:
Pyrrolidin-2-Ones With Aminoindane And Phenylpyrrolidine
P4 Motifs
pdb|2Y81|B Chain B, Structure And Property Based Design Of Factor Xa Inhibitors:
Pyrrolidin-2-Ones With Aminoindane And Phenylpyrrolidine
P4 Motifs
pdb|2Y82|B Chain B, Structure And Property Based Design Of Factor Xa Inhibitors:
Pyrrolidin-2-Ones With Aminoindane And Phenylpyrrolidine
P4 Motifs
Length = 134
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 1167 DDCVSSPCHNGGICKDSIAGYTCECLAGFTGMSCETNINDCAS---NPCHRGECIDGENS 1223
D C +SPC N G CKD + YTC CL GF G +CE S C + C + +NS
Sbjct: 43 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQF-CHEEQNS 101
Query: 1224 FTCACHPGFTGA 1235
C+C G+T A
Sbjct: 102 VVCSCARGYTLA 113
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 1353 SDVDECASDPCLNGGTCEDGLNQFICHCKPGYGGKRCE-FDIDECGSNPCQHGGICTDHL 1411
D D+C + PC N G C+DGL ++ C C G+ GK CE F C + C +
Sbjct: 40 KDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQ 99
Query: 1412 NGYTCECQIGYT 1423
N C C GYT
Sbjct: 100 NSVVCSCARGYT 111
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 27/36 (75%)
Query: 985 DDCASFPCQNGGTCLDEVGDYSCLCVDGFSGKHCEV 1020
D C + PCQN G C D +G+Y+C C++GF GK+CE+
Sbjct: 43 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCEL 78
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
Query: 1091 NECESHPCQNDGSCLDDPGTFRCVCMPGFTGTQCETDIDECASNPCLNGG----ICNDLI 1146
++CE+ PCQN G C D G + C C+ GF G CE + S L+ G C++
Sbjct: 43 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCS---LDNGDCDQFCHEEQ 99
Query: 1147 NTFKCACPIGFT 1158
N+ C+C G+T
Sbjct: 100 NSVVCSCARGYT 111
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 1280 NECYSNPCRNGAKCVDGINRYSCECLPGYTGLHCETNINE-CASNPCANGGVCVDLIDGF 1338
++C ++PC+N KC DG+ Y+C CL G+ G +CE + C+ + C + +
Sbjct: 43 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSV 102
Query: 1339 KCECPRGY 1346
C C RGY
Sbjct: 103 VCSCARGY 110
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 27/37 (72%)
Query: 670 NECYSNPCQHAGTCEDRIADYACYCLPMWNGKNCDLY 706
++C ++PCQ+ G C+D + +Y C CL + GKNC+L+
Sbjct: 43 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELF 79
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 12/89 (13%)
Query: 1341 ECPRGYYDARCLSDVDECASDPCLNGGTCEDGLNQFICHCKPGYGGKRCEFDIDECGSNP 1400
E +G+ + C+ + C+ + D N+F K G D+C ++P
Sbjct: 2 EMKKGHLERECMEET--CSYEEAREVFEDSDKTNEFWNKYKDG----------DQCETSP 49
Query: 1401 CQHGGICTDHLNGYTCECQIGYTGINCEI 1429
CQ+ G C D L YTC C G+ G NCE+
Sbjct: 50 CQNQGKCKDGLGEYTCTCLEGFEGKNCEL 78
Score = 38.1 bits (87), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Query: 1127 DIDECASNPCLNGGICNDLINTFKCACPIGFTGSHCQINIDDCVSSPCHNGG---ICKDS 1183
D D+C ++PC N G C D + + C C GF G +C++ S NG C +
Sbjct: 41 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCS--LDNGDCDQFCHEE 98
Query: 1184 IAGYTCECLAGFT 1196
C C G+T
Sbjct: 99 QNSVVCSCARGYT 111
Score = 37.7 bits (86), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Query: 187 NECESHPCQNDGSCLDDPGTFRCVCMCEPGYTGQNCE 223
++CE+ PCQN G C D G + C C+ G+ G+NCE
Sbjct: 43 DQCETSPCQNQGKCKDGLGEYTCTCL--EGFEGKNCE 77
Score = 37.7 bits (86), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 37 ANSCDSFPCMNGGTCTLKSLDRYTCTCAPGFTGSQCEL--QDHCASSPCRNGAVCTSLED 94
+ C++ PC N G C L YTCTC GF G CEL + C+ C ++
Sbjct: 42 GDQCETSPCQNQGKCK-DGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQN 100
Query: 95 TYECDCAPGFV 105
+ C CA G+
Sbjct: 101 SVVCSCARGYT 111
Score = 37.7 bits (86), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Query: 154 SPCEHDGTCVNTPGSFACNCTQGFTGPRCETNVNE-CESHPCQNDGSCLDDPGTFRCVCM 212
SPC++ G C + G + C C +GF G CE + C D C ++ + VC
Sbjct: 48 SPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSV--VCS 105
Query: 213 CEPGYTGQNCESKYVPCDPSPC 234
C GYT + +P P PC
Sbjct: 106 CARGYTLADNGKACIPTGPYPC 127
Score = 37.4 bits (85), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 1242 DECASNPCQFGGQCEDLINGYQCRCKPGTSGTNCEININE-CYSNPCRNGAKCVDGINRY 1300
D+C ++PCQ G+C+D + Y C C G G NCE+ + C + C + N
Sbjct: 43 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSV 102
Query: 1301 SCECLPGYT 1309
C C GYT
Sbjct: 103 VCSCARGYT 111
Score = 37.4 bits (85), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Query: 943 EDVDECQLSSPCRNGATCHNTNGSYLCECAKGYEGRDCLINTDDCASFPCQNGG---TCL 999
+D D+C+ +SPC+N C + G Y C C +G+EG++C + T S NG C
Sbjct: 40 KDGDQCE-TSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSL--DNGDCDQFCH 96
Query: 1000 DEVGDYSCLCVDGFS 1014
+E C C G++
Sbjct: 97 EEQNSVVCSCARGYT 111
Score = 36.6 bits (83), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
Query: 266 DDCPGNLCQNGATCMDGINKYSCLCLATYTGDLCEQDVDE-CSIRPSVCHNGATCTNSVG 324
D C + CQN C DG+ +Y+C CL + G CE + CS+ C C
Sbjct: 43 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQ--FCHEEQN 100
Query: 325 GFSCICVNGWTGPD 338
C C G+T D
Sbjct: 101 SVVCSCARGYTLAD 114
Score = 35.0 bits (79), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 1058 SPCEHDGTCVNTPGSFACNCTQGFTGPRCETNVNE-CESHPCQNDGSCLDDPGTFRCVCM 1116
SPC++ G C + G + C C +GF G CE + C D C ++ + C C
Sbjct: 48 SPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCA 107
Query: 1117 PGFT 1120
G+T
Sbjct: 108 RGYT 111
Score = 33.9 bits (76), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 301 QDVDECSIRPSVCHNGATCTNSVGGFSCICVNGWTGPDCSL 341
+D D+C P C N C + +G ++C C+ G+ G +C L
Sbjct: 40 KDGDQCETSP--CQNQGKCKDGLGEYTCTCLEGFEGKNCEL 78
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Query: 229 CDPSPCQNGGVCRELDNL-NYECECQSGYRGKNCE 262
C+ SPCQN G C+ D L Y C C G+ GKNCE
Sbjct: 45 CETSPCQNQGKCK--DGLGEYTCTCLEGFEGKNCE 77
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 629 GYDCDSNPCQNGGFCRSKEG-GGYRCDCPPGATGTHCELDSRNEC 672
G C+++PCQN G C K+G G Y C C G G +CEL +R C
Sbjct: 42 GDQCETSPCQNQGKC--KDGLGEYTCTCLEGFEGKNCELFTRKLC 84
Score = 32.0 bits (71), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 28/71 (39%), Gaps = 5/71 (7%)
Query: 344 DDCAGAACFNGATCIDRVGSFYCQCTPGKTGLLCHL--EDACTSNPCHADAICDTNPIIN 401
D C + C N C D +G + C C G G C L C+ + D C
Sbjct: 43 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEE---Q 99
Query: 402 GSYTCSCASGY 412
S CSCA GY
Sbjct: 100 NSVVCSCARGY 110
Score = 30.8 bits (68), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Query: 1318 NECASNPCANGGVCVDLIDGFKCECPRGYYDARC-LSDVDECASDPCLNGGTCEDGLNQF 1376
++C ++PC N G C D + + C C G+ C L C+ D C + N
Sbjct: 43 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSV 102
Query: 1377 ICHCKPGY 1384
+C C GY
Sbjct: 103 VCSCARGY 110
Score = 30.8 bits (68), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 76 DHCASSPCRNGAVCTSLEDTYECDCAPGFVGQTCS 110
D C +SPC+N C Y C C GF G+ C
Sbjct: 43 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCE 77
Score = 30.4 bits (67), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 39/91 (42%), Gaps = 16/91 (17%)
Query: 381 DACTSNPCHADAICDTNPIINGSYTCSCASGYKGVN--------CSEDINECEQGINCEI 432
D C ++PC C G YTC+C G++G N CS D +C+Q + E
Sbjct: 43 DQCETSPCQNQGKCKDGL---GEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQ 99
Query: 433 NIDDCAFKPCRHGGTCIDLVNAYKCVCQVPY 463
N C+ C G T D N C+ PY
Sbjct: 100 NSVVCS---CARGYTLAD--NGKACIPTGPY 125
>pdb|1NFU|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr132747
Length = 195
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Query: 1167 DDCVSSPCHNGGICKDSIAGYTCECLAGFTGMSCETNINDCASNPCHRGECI----DGEN 1222
D C +SPC N G CKD + YTC CL GF G +CE S G+C + +N
Sbjct: 43 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCS--LDNGDCDQFCHEEQN 100
Query: 1223 SFTCACHPGFTGA 1235
S C+C G+T A
Sbjct: 101 SVVCSCARGYTLA 113
Score = 47.4 bits (111), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 27/36 (75%)
Query: 985 DDCASFPCQNGGTCLDEVGDYSCLCVDGFSGKHCEV 1020
D C + PCQN G C D +G+Y+C C++GF GK+CE+
Sbjct: 43 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCEL 78
Score = 47.0 bits (110), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 1353 SDVDECASDPCLNGGTCEDGLNQFICHCKPGYGGKRCE-FDIDECGSNPCQHGGICTDHL 1411
D D+C + PC N G C+DGL ++ C C G+ GK CE F C + C +
Sbjct: 40 KDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQ 99
Query: 1412 NGYTCECQIGYT 1423
N C C GYT
Sbjct: 100 NSVVCSCARGYT 111
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
Query: 1091 NECESHPCQNDGSCLDDPGTFRCVCMPGFTGTQCETDIDECASNPCLNGG----ICNDLI 1146
++CE+ PCQN G C D G + C C+ GF G CE + S L+ G C++
Sbjct: 43 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCS---LDNGDCDQFCHEEQ 99
Query: 1147 NTFKCACPIGFT 1158
N+ C+C G+T
Sbjct: 100 NSVVCSCARGYT 111
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 1280 NECYSNPCRNGAKCVDGINRYSCECLPGYTGLHCETNINECASNPCANGG---VCVDLID 1336
++C ++PC+N KC DG+ Y+C CL G+ G +CE + S NG C + +
Sbjct: 43 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCS--LDNGDCDQFCHEEQN 100
Query: 1337 GFKCECPRGY 1346
C C RGY
Sbjct: 101 SVVCSCARGY 110
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 12/89 (13%)
Query: 1341 ECPRGYYDARCLSDVDECASDPCLNGGTCEDGLNQFICHCKPGYGGKRCEFDIDECGSNP 1400
E +G+ + C+ + C+ + D N+F K G D+C ++P
Sbjct: 2 EMKKGHLERECMEET--CSYEEAREVFEDSDKTNEFWNKYKDG----------DQCETSP 49
Query: 1401 CQHGGICTDHLNGYTCECQIGYTGINCEI 1429
CQ+ G C D L YTC C G+ G NCE+
Sbjct: 50 CQNQGKCKDGLGEYTCTCLEGFEGKNCEL 78
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 27/37 (72%)
Query: 670 NECYSNPCQHAGTCEDRIADYACYCLPMWNGKNCDLY 706
++C ++PCQ+ G C+D + +Y C CL + GKNC+L+
Sbjct: 43 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELF 79
Score = 38.1 bits (87), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Query: 1127 DIDECASNPCLNGGICNDLINTFKCACPIGFTGSHCQINIDDCVSSPCHNGG---ICKDS 1183
D D+C ++PC N G C D + + C C GF G +C++ S NG C +
Sbjct: 41 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCS--LDNGDCDQFCHEE 98
Query: 1184 IAGYTCECLAGFT 1196
C C G+T
Sbjct: 99 QNSVVCSCARGYT 111
Score = 37.7 bits (86), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Query: 187 NECESHPCQNDGSCLDDPGTFRCVCMCEPGYTGQNCE 223
++CE+ PCQN G C D G + C C+ G+ G+NCE
Sbjct: 43 DQCETSPCQNQGKCKDGLGEYTCTCL--EGFEGKNCE 77
Score = 37.4 bits (85), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Query: 1242 DECASNPCQFGGQCEDLINGYQCRCKPGTSGTNCEININECYSNPCRNG---AKCVDGIN 1298
D+C ++PCQ G+C+D + Y C C G G NCE+ + S NG C + N
Sbjct: 43 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCS--LDNGDCDQFCHEEQN 100
Query: 1299 RYSCECLPGYT 1309
C C GYT
Sbjct: 101 SVVCSCARGYT 111
Score = 37.0 bits (84), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Query: 943 EDVDECQLSSPCRNGATCHNTNGSYLCECAKGYEGRDCLINTDDCASFPCQNGG---TCL 999
+D D+C+ +SPC+N C + G Y C C +G+EG++C + T S NG C
Sbjct: 40 KDGDQCE-TSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSL--DNGDCDQFCH 96
Query: 1000 DEVGDYSCLCVDGFS 1014
+E C C G++
Sbjct: 97 EEQNSVVCSCARGYT 111
Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 37 ANSCDSFPCMNGGTCTLKSLDRYTCTCAPGFTGSQCEL--QDHCASSPCRNGAVCTSLED 94
+ C++ PC N G C L YTCTC GF G CEL + C+ C ++
Sbjct: 42 GDQCETSPCQNQGKCK-DGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQN 100
Query: 95 TYECDCAPGFV 105
+ C CA G+
Sbjct: 101 SVVCSCARGYT 111
Score = 36.6 bits (83), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Query: 154 SPCEHDGTCVNTPGSFACNCTQGFTGPRCETNVNE-CESHPCQNDGSCLDDPGTFRCVCM 212
SPC++ G C + G + C C +GF G CE + C D C ++ + VC
Sbjct: 48 SPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSV--VCS 105
Query: 213 CEPGYTGQNCESKYVPCDPSPC 234
C GYT + +P P PC
Sbjct: 106 CARGYTLADNGKACIPTGPYPC 127
Score = 35.4 bits (80), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
Query: 266 DDCPGNLCQNGATCMDGINKYSCLCLATYTGDLCEQDVDE-CSIRPSVCHNGATCTNSVG 324
D C + CQN C DG+ +Y+C CL + G CE + CS+ C C
Sbjct: 43 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQ--FCHEEQN 100
Query: 325 GFSCICVNGWTGPD 338
C C G+T D
Sbjct: 101 SVVCSCARGYTLAD 114
Score = 33.9 bits (76), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Query: 229 CDPSPCQNGGVCRELDNL-NYECECQSGYRGKNCE 262
C+ SPCQN G C+ D L Y C C G+ GKNCE
Sbjct: 45 CETSPCQNQGKCK--DGLGEYTCTCLEGFEGKNCE 77
Score = 33.9 bits (76), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 1058 SPCEHDGTCVNTPGSFACNCTQGFTGPRCETNVNE-CESHPCQNDGSCLDDPGTFRCVCM 1116
SPC++ G C + G + C C +GF G CE + C D C ++ + C C
Sbjct: 48 SPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCA 107
Query: 1117 PGFT 1120
G+T
Sbjct: 108 RGYT 111
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 301 QDVDECSIRPSVCHNGATCTNSVGGFSCICVNGWTGPDCSL 341
+D D+C P C N C + +G ++C C+ G+ G +C L
Sbjct: 40 KDGDQCETSP--CQNQGKCKDGLGEYTCTCLEGFEGKNCEL 78
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 629 GYDCDSNPCQNGGFCRSKEG-GGYRCDCPPGATGTHCELDSRNEC 672
G C+++PCQN G C K+G G Y C C G G +CEL +R C
Sbjct: 42 GDQCETSPCQNQGKC--KDGLGEYTCTCLEGFEGKNCELFTRKLC 84
Score = 31.6 bits (70), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 48/124 (38%), Gaps = 17/124 (13%)
Query: 381 DACTSNPCHADAICDTNPIINGSYTCSCASGYKGVN--------CSEDINECEQGINCEI 432
D C ++PC C G YTC+C G++G N CS D +C+Q + E
Sbjct: 43 DQCETSPCQNQGKCKDGL---GEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQ 99
Query: 433 NIDDCAFKPCRHGGTCIDLVNAYKCVCQVPYT-GHDCHQKLDPCVPNSACVRCLTPGMIV 491
N C+ C G T D N C+ PY G ++ V + P I
Sbjct: 100 NSVVCS---CARGYTLAD--NGKACIPTGPYPCGKQTLERRKRSVAQATSSSGEAPDSIT 154
Query: 492 IRSW 495
+ +
Sbjct: 155 WKPY 158
Score = 31.2 bits (69), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 28/71 (39%), Gaps = 5/71 (7%)
Query: 344 DDCAGAACFNGATCIDRVGSFYCQCTPGKTGLLCHL--EDACTSNPCHADAICDTNPIIN 401
D C + C N C D +G + C C G G C L C+ + D C
Sbjct: 43 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEE---Q 99
Query: 402 GSYTCSCASGY 412
S CSCA GY
Sbjct: 100 NSVVCSCARGY 110
Score = 30.4 bits (67), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 76 DHCASSPCRNGAVCTSLEDTYECDCAPGFVGQTCS 110
D C +SPC+N C Y C C GF G+ C
Sbjct: 43 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCE 77
>pdb|2H9E|L Chain L, Crystal Structure Of FxaSELECTIDENAPC2 TERNARY COMPLEX
Length = 149
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Query: 1167 DDCVSSPCHNGGICKDSIAGYTCECLAGFTGMSCETNINDCASNPCHRGECI----DGEN 1222
D C +SPC N G CKD + YTC CL GF G +CE S G+C + +N
Sbjct: 3 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCS--LDNGDCDQFCHEEQN 60
Query: 1223 SFTCACHPGFTGA 1235
S C+C G+T A
Sbjct: 61 SVVCSCARGYTLA 73
Score = 47.4 bits (111), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 1354 DVDECASDPCLNGGTCEDGLNQFICHCKPGYGGKRCE-FDIDECGSNPCQHGGICTDHLN 1412
D D+C + PC N G C+DGL ++ C C G+ GK CE F C + C + N
Sbjct: 1 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQN 60
Query: 1413 GYTCECQIGYT 1423
C C GYT
Sbjct: 61 SVVCSCARGYT 71
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 27/36 (75%)
Query: 985 DDCASFPCQNGGTCLDEVGDYSCLCVDGFSGKHCEV 1020
D C + PCQN G C D +G+Y+C C++GF GK+CE+
Sbjct: 3 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCEL 38
Score = 44.3 bits (103), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
Query: 1091 NECESHPCQNDGSCLDDPGTFRCVCMPGFTGTQCETDIDECASNPCLNGG----ICNDLI 1146
++CE+ PCQN G C D G + C C+ GF G CE + S L+ G C++
Sbjct: 3 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCS---LDNGDCDQFCHEEQ 59
Query: 1147 NTFKCACPIGFT 1158
N+ C+C G+T
Sbjct: 60 NSVVCSCARGYT 71
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 1280 NECYSNPCRNGAKCVDGINRYSCECLPGYTGLHCETNINECASNPCANGG---VCVDLID 1336
++C ++PC+N KC DG+ Y+C CL G+ G +CE + S NG C + +
Sbjct: 3 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCS--LDNGDCDQFCHEEQN 60
Query: 1337 GFKCECPRGY 1346
C C RGY
Sbjct: 61 SVVCSCARGY 70
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 27/37 (72%)
Query: 670 NECYSNPCQHAGTCEDRIADYACYCLPMWNGKNCDLY 706
++C ++PCQ+ G C+D + +Y C CL + GKNC+L+
Sbjct: 3 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELF 39
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 25/38 (65%)
Query: 1392 DIDECGSNPCQHGGICTDHLNGYTCECQIGYTGINCEI 1429
D D+C ++PCQ+ G C D L YTC C G+ G NCE+
Sbjct: 1 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCEL 38
Score = 37.7 bits (86), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Query: 1242 DECASNPCQFGGQCEDLINGYQCRCKPGTSGTNCEININECYSNPCRNG---AKCVDGIN 1298
D+C ++PCQ G+C+D + Y C C G G NCE+ + S NG C + N
Sbjct: 3 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCS--LDNGDCDQFCHEEQN 60
Query: 1299 RYSCECLPGYT 1309
C C GYT
Sbjct: 61 SVVCSCARGYT 71
Score = 37.7 bits (86), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Query: 187 NECESHPCQNDGSCLDDPGTFRCVCMCEPGYTGQNCE 223
++CE+ PCQN G C D G + C C+ G+ G+NCE
Sbjct: 3 DQCETSPCQNQGKCKDGLGEYTCTCL--EGFEGKNCE 37
Score = 37.4 bits (85), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Query: 1127 DIDECASNPCLNGGICNDLINTFKCACPIGFTGSHCQINIDDCVSSPCHNGG---ICKDS 1183
D D+C ++PC N G C D + + C C GF G +C++ S NG C +
Sbjct: 1 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCS--LDNGDCDQFCHEE 58
Query: 1184 IAGYTCECLAGFT 1196
C C G+T
Sbjct: 59 QNSVVCSCARGYT 71
Score = 37.0 bits (84), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 10/82 (12%)
Query: 944 DVDECQLSSPCRNGATCHNTNGSYLCECAKGYEGRDCLINTDDCASFPCQNGG---TCLD 1000
D D+C+ +SPC+N C + G Y C C +G+EG++C + T S NG C +
Sbjct: 1 DGDQCE-TSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSL--DNGDCDQFCHE 57
Query: 1001 EVGDYSCLCVDGFS----GKHC 1018
E C C G++ GK C
Sbjct: 58 EQNSVVCSCARGYTLADNGKAC 79
Score = 36.6 bits (83), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 37 ANSCDSFPCMNGGTCTLKSLDRYTCTCAPGFTGSQCEL--QDHCASSPCRNGAVCTSLED 94
+ C++ PC N G C L YTCTC GF G CEL + C+ C ++
Sbjct: 2 GDQCETSPCQNQGKCK-DGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQN 60
Query: 95 TYECDCAPGFV 105
+ C CA G+
Sbjct: 61 SVVCSCARGYT 71
Score = 36.2 bits (82), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Query: 154 SPCEHDGTCVNTPGSFACNCTQGFTGPRCETNVNE-CESHPCQNDGSCLDDPGTFRCVCM 212
SPC++ G C + G + C C +GF G CE + C D C ++ + VC
Sbjct: 8 SPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSV--VCS 65
Query: 213 CEPGYTGQNCESKYVPCDPSPC 234
C GYT + +P P PC
Sbjct: 66 CARGYTLADNGKACIPTGPYPC 87
Score = 35.0 bits (79), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
Query: 266 DDCPGNLCQNGATCMDGINKYSCLCLATYTGDLCEQDVDE-CSIRPSVCHNGATCTNSVG 324
D C + CQN C DG+ +Y+C CL + G CE + CS+ C C
Sbjct: 3 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQ--FCHEEQN 60
Query: 325 GFSCICVNGWTGPD 338
C C G+T D
Sbjct: 61 SVVCSCARGYTLAD 74
Score = 33.9 bits (76), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Query: 229 CDPSPCQNGGVCRELDNL-NYECECQSGYRGKNCE 262
C+ SPCQN G C+ D L Y C C G+ GKNCE
Sbjct: 5 CETSPCQNQGKCK--DGLGEYTCTCLEGFEGKNCE 37
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 1058 SPCEHDGTCVNTPGSFACNCTQGFTGPRCETNVNE-CESHPCQNDGSCLDDPGTFRCVCM 1116
SPC++ G C + G + C C +GF G CE + C D C ++ + C C
Sbjct: 8 SPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCA 67
Query: 1117 PGFT 1120
G+T
Sbjct: 68 RGYT 71
Score = 32.7 bits (73), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 629 GYDCDSNPCQNGGFCRSKEG-GGYRCDCPPGATGTHCELDSRNEC 672
G C+++PCQN G C K+G G Y C C G G +CEL +R C
Sbjct: 2 GDQCETSPCQNQGKC--KDGLGEYTCTCLEGFEGKNCELFTRKLC 44
Score = 32.3 bits (72), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 302 DVDECSIRPSVCHNGATCTNSVGGFSCICVNGWTGPDCSL 341
D D+C P C N C + +G ++C C+ G+ G +C L
Sbjct: 1 DGDQCETSP--CQNQGKCKDGLGEYTCTCLEGFEGKNCEL 38
Score = 31.2 bits (69), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 48/124 (38%), Gaps = 17/124 (13%)
Query: 381 DACTSNPCHADAICDTNPIINGSYTCSCASGYKGVN--------CSEDINECEQGINCEI 432
D C ++PC C G YTC+C G++G N CS D +C+Q + E
Sbjct: 3 DQCETSPCQNQGKCKDGL---GEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQ 59
Query: 433 NIDDCAFKPCRHGGTCIDLVNAYKCVCQVPYT-GHDCHQKLDPCVPNSACVRCLTPGMIV 491
N C+ C G T D N C+ PY G ++ V + P I
Sbjct: 60 NSVVCS---CARGYTLAD--NGKACIPTGPYPCGKQTLERRKRSVAQATSSSGEAPDSIT 114
Query: 492 IRSW 495
+ +
Sbjct: 115 WKPY 118
Score = 30.8 bits (68), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 28/71 (39%), Gaps = 5/71 (7%)
Query: 344 DDCAGAACFNGATCIDRVGSFYCQCTPGKTGLLCHL--EDACTSNPCHADAICDTNPIIN 401
D C + C N C D +G + C C G G C L C+ + D C
Sbjct: 3 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEE---Q 59
Query: 402 GSYTCSCASGY 412
S CSCA GY
Sbjct: 60 NSVVCSCARGY 70
>pdb|1P0S|L Chain L, Crystal Structure Of Blood Coagulation Factor Xa In Complex
With Ecotin M84r
Length = 138
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 1167 DDCVSSPCHNGGICKDSIAGYTCECLAGFTGMSCETNINDCAS---NPCHRGECIDGENS 1223
D C +SPC N G CKD + YTC CL GF G +CE S C + C + +NS
Sbjct: 48 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQF-CHEEQNS 106
Query: 1224 FTCACHPGFTGA 1235
C+C G+T A
Sbjct: 107 VVCSCARGYTLA 118
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 1353 SDVDECASDPCLNGGTCEDGLNQFICHCKPGYGGKRCE-FDIDECGSNPCQHGGICTDHL 1411
D D+C + PC N G C+DGL ++ C C G+ GK CE F C + C +
Sbjct: 45 KDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQ 104
Query: 1412 NGYTCECQIGYT 1423
N C C GYT
Sbjct: 105 NSVVCSCARGYT 116
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 27/36 (75%)
Query: 985 DDCASFPCQNGGTCLDEVGDYSCLCVDGFSGKHCEV 1020
D C + PCQN G C D +G+Y+C C++GF GK+CE+
Sbjct: 48 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCEL 83
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
Query: 1091 NECESHPCQNDGSCLDDPGTFRCVCMPGFTGTQCETDIDECASNPCLNGG----ICNDLI 1146
++CE+ PCQN G C D G + C C+ GF G CE + S L+ G C++
Sbjct: 48 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCS---LDNGDCDQFCHEEQ 104
Query: 1147 NTFKCACPIGFT 1158
N+ C+C G+T
Sbjct: 105 NSVVCSCARGYT 116
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 1280 NECYSNPCRNGAKCVDGINRYSCECLPGYTGLHCETNINE-CASNPCANGGVCVDLIDGF 1338
++C ++PC+N KC DG+ Y+C CL G+ G +CE + C+ + C + +
Sbjct: 48 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSV 107
Query: 1339 KCECPRGY 1346
C C RGY
Sbjct: 108 VCSCARGY 115
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 27/37 (72%)
Query: 670 NECYSNPCQHAGTCEDRIADYACYCLPMWNGKNCDLY 706
++C ++PCQ+ G C+D + +Y C CL + GKNC+L+
Sbjct: 48 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELF 84
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 25/38 (65%)
Query: 1392 DIDECGSNPCQHGGICTDHLNGYTCECQIGYTGINCEI 1429
D D+C ++PCQ+ G C D L YTC C G+ G NCE+
Sbjct: 46 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCEL 83
Score = 38.9 bits (89), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Query: 154 SPCEHDGTCVNTPGSFACNCTQGFTGPRCETNVNE-CESHPCQNDGSCLDDPGTFRCVCM 212
SPC++ G C + G + C C +GF G CE + C D C ++ + VC
Sbjct: 53 SPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSV--VCS 110
Query: 213 CEPGYTGQNCESKYVPCDPSPC 234
C GYT + +P P PC
Sbjct: 111 CARGYTLADNGKACIPTGPYPC 132
Score = 38.1 bits (87), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 35/73 (47%), Gaps = 8/73 (10%)
Query: 187 NECESHPCQNDGSCLDDPGTFRCVCMCEPGYTGQNCE---SKYVPCDPSPCQNGGVCREL 243
++CE+ PCQN G C D G + C C+ G+ G+NCE K D C C E
Sbjct: 48 DQCETSPCQNQGKCKDGLGEYTCTCL--EGFEGKNCELFTRKLCSLDNGDCDQ--FCHEE 103
Query: 244 DNLNYECECQSGY 256
N + C C GY
Sbjct: 104 QN-SVVCSCARGY 115
Score = 38.1 bits (87), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 1242 DECASNPCQFGGQCEDLINGYQCRCKPGTSGTNCEININE-CYSNPCRNGAKCVDGINRY 1300
D+C ++PCQ G+C+D + Y C C G G NCE+ + C + C + N
Sbjct: 48 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSV 107
Query: 1301 SCECLPGYT 1309
C C GYT
Sbjct: 108 VCSCARGYT 116
Score = 37.7 bits (86), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Query: 943 EDVDECQLSSPCRNGATCHNTNGSYLCECAKGYEGRDCLINTDDCASFPCQNGG---TCL 999
+D D+C+ +SPC+N C + G Y C C +G+EG++C + T S NG C
Sbjct: 45 KDGDQCE-TSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSL--DNGDCDQFCH 101
Query: 1000 DEVGDYSCLCVDGFS 1014
+E C C G++
Sbjct: 102 EEQNSVVCSCARGYT 116
Score = 37.4 bits (85), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 37 ANSCDSFPCMNGGTCTLKSLDRYTCTCAPGFTGSQCEL--QDHCASSPCRNGAVCTSLED 94
+ C++ PC N G C L YTCTC GF G CEL + C+ C ++
Sbjct: 47 GDQCETSPCQNQGKCK-DGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQN 105
Query: 95 TYECDCAPGFV 105
+ C CA G+
Sbjct: 106 SVVCSCARGYT 116
Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Query: 1127 DIDECASNPCLNGGICNDLINTFKCACPIGFTGSHCQINIDDCVSSPCHNGG---ICKDS 1183
D D+C ++PC N G C D + + C C GF G +C++ S NG C +
Sbjct: 46 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCS--LDNGDCDQFCHEE 103
Query: 1184 IAGYTCECLAGFT 1196
C C G+T
Sbjct: 104 QNSVVCSCARGYT 116
Score = 35.8 bits (81), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
Query: 266 DDCPGNLCQNGATCMDGINKYSCLCLATYTGDLCEQDVDE-CSIRPSVCHNGATCTNSVG 324
D C + CQN C DG+ +Y+C CL + G CE + CS+ C C
Sbjct: 48 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQ--FCHEEQN 105
Query: 325 GFSCICVNGWTGPD 338
C C G+T D
Sbjct: 106 SVVCSCARGYTLAD 119
Score = 35.0 bits (79), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 1058 SPCEHDGTCVNTPGSFACNCTQGFTGPRCETNVNE-CESHPCQNDGSCLDDPGTFRCVCM 1116
SPC++ G C + G + C C +GF G CE + C D C ++ + C C
Sbjct: 53 SPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCA 112
Query: 1117 PGFT 1120
G+T
Sbjct: 113 RGYT 116
Score = 34.3 bits (77), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Query: 229 CDPSPCQNGGVCRELDNL-NYECECQSGYRGKNCE 262
C+ SPCQN G C+ D L Y C C G+ GKNCE
Sbjct: 50 CETSPCQNQGKCK--DGLGEYTCTCLEGFEGKNCE 82
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 629 GYDCDSNPCQNGGFCRSKEG-GGYRCDCPPGATGTHCELDSRNEC 672
G C+++PCQN G C K+G G Y C C G G +CEL +R C
Sbjct: 47 GDQCETSPCQNQGKC--KDGLGEYTCTCLEGFEGKNCELFTRKLC 89
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 301 QDVDECSIRPSVCHNGATCTNSVGGFSCICVNGWTGPDCSL 341
+D D+C P C N C + +G ++C C+ G+ G +C L
Sbjct: 45 KDGDQCETSP--CQNQGKCKDGLGEYTCTCLEGFEGKNCEL 83
Score = 31.2 bits (69), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Query: 1318 NECASNPCANGGVCVDLIDGFKCECPRGYYDARC-LSDVDECASDPCLNGGTCEDGLNQF 1376
++C ++PC N G C D + + C C G+ C L C+ D C + N
Sbjct: 48 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSV 107
Query: 1377 ICHCKPGY 1384
+C C GY
Sbjct: 108 VCSCARGY 115
Score = 30.8 bits (68), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 28/71 (39%), Gaps = 5/71 (7%)
Query: 344 DDCAGAACFNGATCIDRVGSFYCQCTPGKTGLLCHL--EDACTSNPCHADAICDTNPIIN 401
D C + C N C D +G + C C G G C L C+ + D C
Sbjct: 48 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEE---Q 104
Query: 402 GSYTCSCASGY 412
S CSCA GY
Sbjct: 105 NSVVCSCARGY 115
Score = 30.8 bits (68), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 76 DHCASSPCRNGAVCTSLEDTYECDCAPGFVGQTCS 110
D C +SPC+N C Y C C GF G+ C
Sbjct: 48 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCE 82
Score = 30.8 bits (68), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 39/91 (42%), Gaps = 16/91 (17%)
Query: 381 DACTSNPCHADAICDTNPIINGSYTCSCASGYKGVN--------CSEDINECEQGINCEI 432
D C ++PC C G YTC+C G++G N CS D +C+Q + E
Sbjct: 48 DQCETSPCQNQGKCKDGL---GEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQ 104
Query: 433 NIDDCAFKPCRHGGTCIDLVNAYKCVCQVPY 463
N C+ C G T D N C+ PY
Sbjct: 105 NSVVCS---CARGYTLAD--NGKACIPTGPY 130
>pdb|1QFK|L Chain L, Structure Of Human Factor Viia And Its Implications For The
Triggering Of Blood Coagulation
Length = 104
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 8/84 (9%)
Query: 1357 ECASDPCLNGGTCEDGLNQFICHCKPGYGGKRCEFDIDECGSNPCQHGG---ICTDHL-N 1412
+CAS PC NGG+C+D L +IC C P + G+ CE D+ ++GG C+DH
Sbjct: 1 QCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGT 60
Query: 1413 GYTCECQIGYT----GINCEINID 1432
+C C GY+ G++C ++
Sbjct: 61 KRSCRCHEGYSLLADGVSCTPTVE 84
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 25/39 (64%)
Query: 1168 DCVSSPCHNGGICKDSIAGYTCECLAGFTGMSCETNIND 1206
C SSPC NGG CKD + Y C CL F G +CET+ +D
Sbjct: 1 QCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 39
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 28/36 (77%)
Query: 671 ECYSNPCQHAGTCEDRIADYACYCLPMWNGKNCDLY 706
+C S+PCQ+ G+C+D++ Y C+CLP + G+NC+ +
Sbjct: 1 QCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETH 36
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 26/39 (66%)
Query: 986 DCASFPCQNGGTCLDEVGDYSCLCVDGFSGKHCEVDIDE 1024
CAS PCQNGG+C D++ Y C C+ F G++CE D+
Sbjct: 1 QCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 39
Score = 44.3 bits (103), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Query: 951 SSPCRNGATCHNTNGSYLCECAKGYEGRDCLINTDDCASFPCQNGG---TCLDEVG-DYS 1006
SSPC+NG +C + SY+C C +EGR+C + DD +NGG C D G S
Sbjct: 4 SSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGTKRS 63
Query: 1007 CLCVDGFS 1014
C C +G+S
Sbjct: 64 CRCHEGYS 71
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 4/98 (4%)
Query: 1130 ECASNPCLNGGICNDLINTFKCACPIGFTGSHCQINIDDCVSSPCHNGG---ICKDSIA- 1185
+CAS+PC NGG C D + ++ C C F G +C+ + DD + NGG C D
Sbjct: 1 QCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGT 60
Query: 1186 GYTCECLAGFTGMSCETNINDCASNPCHRGECIDGENS 1223
+C C G++ ++ + PC + ++ N+
Sbjct: 61 KRSCRCHEGYSLLADGVSCTPTVEYPCGKIPILEKRNA 98
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
Query: 1092 ECESHPCQNDGSCLDDPGTFRCVCMPGFTGTQCETDIDECASNPCLNGG---ICNDLINT 1148
+C S PCQN GSC D ++ C C+P F G CET D+ NGG C+D T
Sbjct: 1 QCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGT 60
Query: 1149 FK-CACPIGFTGSHCQINIDDCVSSPC 1174
+ C C G++ ++ V PC
Sbjct: 61 KRSCRCHEGYSLLADGVSCTPTVEYPC 87
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 24/39 (61%)
Query: 1395 ECGSNPCQHGGICTDHLNGYTCECQIGYTGINCEINIDD 1433
+C S+PCQ+GG C D L Y C C + G NCE + DD
Sbjct: 1 QCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 39
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 1243 ECASNPCQFGGQCEDLINGYQCRCKPGTSGTNCEININECYSNPCRNGA---KCVDGI-N 1298
+CAS+PCQ GG C+D + Y C C P G NCE + ++ NG C D
Sbjct: 1 QCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGT 60
Query: 1299 RYSCECLPGYTGL 1311
+ SC C GY+ L
Sbjct: 61 KRSCRCHEGYSLL 73
Score = 40.4 bits (93), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 26/39 (66%)
Query: 1281 ECYSNPCRNGAKCVDGINRYSCECLPGYTGLHCETNINE 1319
+C S+PC+NG C D + Y C CLP + G +CET+ ++
Sbjct: 1 QCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 39
Score = 37.7 bits (86), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Query: 188 ECESHPCQNDGSCLDDPGTFRCVCMCEPGYTGQNCESKYVPCDPSPCQNGG---VCRELD 244
+C S PCQN GSC D ++ +C C P + G+NCE+ +NGG C +
Sbjct: 1 QCASSPCQNGGSCKDQLQSY--ICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHT 58
Query: 245 NLNYECECQSGY 256
C C GY
Sbjct: 59 GTKRSCRCHEGY 70
Score = 36.6 bits (83), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 77 HCASSPCRNGAVCTSLEDTYECDCAPGFVGQTC---SEDIIECVDD 119
CASSPC+NG C +Y C C P F G+ C +D + CV++
Sbjct: 1 QCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNE 46
Score = 34.7 bits (78), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Query: 229 CDPSPCQNGGVCRELDNL-NYECECQSGYRGKNCEENIDD 267
C SPCQNGG C+ D L +Y C C + G+NCE + DD
Sbjct: 2 CASSPCQNGGSCK--DQLQSYICFCLPAFEGRNCETHKDD 39
Score = 34.3 bits (77), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 267 DCPGNLCQNGATCMDGINKYSCLCLATYTGDLCEQDVDE 305
C + CQNG +C D + Y C CL + G CE D+
Sbjct: 1 QCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 39
Score = 33.9 bits (76), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 40 CDSFPCMNGGTCTLKSLDRYTCTCAPGFTGSQCE 73
C S PC NGG+C L Y C C P F G CE
Sbjct: 2 CASSPCQNGGSCK-DQLQSYICFCLPAFEGRNCE 34
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 436 DCAFKPCRHGGTCIDLVNAYKCVCQVPYTGHDCHQKLD 473
CA PC++GG+C D + +Y C C + G +C D
Sbjct: 1 QCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKD 38
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 869 DCAFKPCRHGGTCIDLVNAYKCVCQVPYTGHDCHQKLD 906
CA PC++GG+C D + +Y C C + G +C D
Sbjct: 1 QCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKD 38
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 152 AGSPCEHDGTCVNTPGSFACNCTQGFTGPRCETNVNECESHPCQNDG---SCLDDPGTFR 208
A SPC++ G+C + S+ C C F G CET+ ++ +N G C D GT R
Sbjct: 3 ASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGTKR 62
Query: 209 CVCMCEPGYT 218
C C GY+
Sbjct: 63 -SCRCHEGYS 71
Score = 32.0 bits (71), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 1056 AGSPCEHDGTCVNTPGSFACNCTQGFTGPRCETNVNECESHPCQNDG---SCLDDPGTFR 1112
A SPC++ G+C + S+ C C F G CET+ ++ +N G C D GT R
Sbjct: 3 ASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGTKR 62
Query: 1113 -CVCMPGFT 1120
C C G++
Sbjct: 63 SCRCHEGYS 71
Score = 30.8 bits (68), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 1319 ECASNPCANGGVCVDLIDGFKCECPRGYYDARCLSDVDE 1357
+CAS+PC NGG C D + + C C + C + D+
Sbjct: 1 QCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 39
>pdb|1F7E|A Chain A, The First Egf-Like Domain From Human Blood Coagulation Fvii,
Nmr, 20 Structures
pdb|1F7M|A Chain A, The First Egf-Like Domain From Human Blood Coagulation Fvii,
Nmr, Minimized Average Structure
pdb|1FF7|A Chain A, The First Egf-Like Domain From Human Blood Coagulation Fvii
(Fucosylated At Ser-60), Nmr, 20 Structures
pdb|1FFM|A Chain A, The First Egf-Like Domain From Human Blood Coagulation Fvii
(Fucosylated At Ser-60), Nmr, Minimized Average Structure
Length = 46
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 29/43 (67%)
Query: 1353 SDVDECASDPCLNGGTCEDGLNQFICHCKPGYGGKRCEFDIDE 1395
SD D+CAS PC NGG+C+D L +IC C P + G+ CE D+
Sbjct: 1 SDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 43
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 26/40 (65%)
Query: 1167 DDCVSSPCHNGGICKDSIAGYTCECLAGFTGMSCETNIND 1206
D C SSPC NGG CKD + Y C CL F G +CET+ +D
Sbjct: 4 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 43
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 29/43 (67%)
Query: 985 DDCASFPCQNGGTCLDEVGDYSCLCVDGFSGKHCEVDIDECSS 1027
D CAS PCQNGG+C D++ Y C C+ F G++CE D+ S+
Sbjct: 4 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDGSA 46
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 29/37 (78%)
Query: 670 NECYSNPCQHAGTCEDRIADYACYCLPMWNGKNCDLY 706
++C S+PCQ+ G+C+D++ Y C+CLP + G+NC+ +
Sbjct: 4 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETH 40
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 26/42 (61%)
Query: 1392 DIDECGSNPCQHGGICTDHLNGYTCECQIGYTGINCEINIDD 1433
D D+C S+PCQ+GG C D L Y C C + G NCE + DD
Sbjct: 2 DGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 43
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 28/43 (65%)
Query: 1126 TDIDECASNPCLNGGICNDLINTFKCACPIGFTGSHCQINIDD 1168
+D D+CAS+PC NGG C D + ++ C C F G +C+ + DD
Sbjct: 1 SDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 43
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 27/43 (62%)
Query: 1088 TNVNECESHPCQNDGSCLDDPGTFRCVCMPGFTGTQCETDIDE 1130
++ ++C S PCQN GSC D ++ C C+P F G CET D+
Sbjct: 1 SDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 43
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 26/40 (65%)
Query: 1242 DECASNPCQFGGQCEDLINGYQCRCKPGTSGTNCEININE 1281
D+CAS+PCQ GG C+D + Y C C P G NCE + ++
Sbjct: 4 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 43
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 27/40 (67%)
Query: 1280 NECYSNPCRNGAKCVDGINRYSCECLPGYTGLHCETNINE 1319
++C S+PC+NG C D + Y C CLP + G +CET+ ++
Sbjct: 4 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 43
Score = 40.0 bits (92), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 944 DVDECQLSSPCRNGATCHNTNGSYLCECAKGYEGRDCLINTDD 986
D D+C SSPC+NG +C + SY+C C +EGR+C + DD
Sbjct: 2 DGDQC-ASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 43
Score = 37.4 bits (85), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
Query: 184 TNVNECESHPCQNDGSCLDDPGTFRCVCMCEPGYTGQNCES 224
++ ++C S PCQN GSC D ++ +C C P + G+NCE+
Sbjct: 1 SDGDQCASSPCQNGGSCKDQLQSY--ICFCLPAFEGRNCET 39
Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 20/34 (58%)
Query: 76 DHCASSPCRNGAVCTSLEDTYECDCAPGFVGQTC 109
D CASSPC+NG C +Y C C P F G+ C
Sbjct: 4 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNC 37
Score = 35.8 bits (81), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 266 DDCPGNLCQNGATCMDGINKYSCLCLATYTGDLCEQDVDECS 307
D C + CQNG +C D + Y C CL + G CE D+ S
Sbjct: 4 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDGS 45
Score = 35.4 bits (80), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 435 DDCAFKPCRHGGTCIDLVNAYKCVCQVPYTGHDCHQKLD 473
D CA PC++GG+C D + +Y C C + G +C D
Sbjct: 4 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKD 42
Score = 35.4 bits (80), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 868 DDCAFKPCRHGGTCIDLVNAYKCVCQVPYTGHDCHQKLD 906
D CA PC++GG+C D + +Y C C + G +C D
Sbjct: 4 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKD 42
Score = 34.7 bits (78), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Query: 229 CDPSPCQNGGVCRELDNL-NYECECQSGYRGKNCEENIDD 267
C SPCQNGG C+ D L +Y C C + G+NCE + DD
Sbjct: 6 CASSPCQNGGSCK--DQLQSYICFCLPAFEGRNCETHKDD 43
Score = 34.3 bits (77), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 37 ANSCDSFPCMNGGTCTLKSLDRYTCTCAPGFTGSQCE 73
+ C S PC NGG+C L Y C C P F G CE
Sbjct: 3 GDQCASSPCQNGGSCK-DQLQSYICFCLPAFEGRNCE 38
Score = 31.6 bits (70), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 1432 DDCAFKPCRHGGTCIDLVNAYKCVCAKAGNHR 1463
D CA PC++GG+C D + +Y C C A R
Sbjct: 4 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGR 35
Score = 31.6 bits (70), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 1202 TNINDCASNPCHRG-ECIDGENSFTCACHPGFTGALCNTQLDE 1243
++ + CAS+PC G C D S+ C C P F G C T D+
Sbjct: 1 SDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 43
Score = 31.6 bits (70), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 520 DINECLSNPCSSHGTLDCVQLVNNYHCNCRPGYMGRHCEV 559
D ++C S+PC + G+ C + +Y C C P + GR+CE
Sbjct: 2 DGDQCASSPCQNGGS--CKDQLQSYICFCLPAFEGRNCET 39
Score = 30.8 bits (68), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 302 DVDECSIRPSVCHNGATCTNSVGGFSCICVNGWTGPDCSLNIDD 345
D D+C+ P C NG +C + + + C C+ + G +C + DD
Sbjct: 2 DGDQCASSP--CQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 43
Score = 30.8 bits (68), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 1315 TNINECASNPCANGGVCVDLIDGFKCECPRGYYDARCLSDVDE 1357
++ ++CAS+PC NGG C D + + C C + C + D+
Sbjct: 1 SDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 43
Score = 30.8 bits (68), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 152 AGSPCEHDGTCVNTPGSFACNCTQGFTGPRCETNVNE 188
A SPC++ G+C + S+ C C F G CET+ ++
Sbjct: 7 ASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 43
Score = 30.8 bits (68), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 1056 AGSPCEHDGTCVNTPGSFACNCTQGFTGPRCETNVNE 1092
A SPC++ G+C + S+ C C F G CET+ ++
Sbjct: 7 ASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 43
>pdb|1EMN|A Chain A, Nmr Study Of A Pair Of Fibrillin Ca2+ Binding Epidermal
Growth Factor-Like Domains, Minimized Average Structure
pdb|1EMO|A Chain A, Nmr Study Of A Pair Of Fibrillin Ca2+ Binding Epidermal
Growth Factor-Like Domains, 22 Structures
Length = 82
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 47/74 (63%), Gaps = 6/74 (8%)
Query: 944 DVDECQLSSPCRNGATCHNTNGSYLCECAKGY--EGRDCLINTDDCA-SFPCQNGGTCLD 1000
D+DEC+ C++G C NT+GSY CEC GY G +C ++TD+C+ PC NG TC +
Sbjct: 4 DMDECKEPDVCKHGQ-CINTDGSYRCECPFGYILAGNEC-VDTDECSVGNPCGNG-TCKN 60
Query: 1001 EVGDYSCLCVDGFS 1014
+G + C C +GF
Sbjct: 61 VIGGFECTCEEGFE 74
Score = 40.0 bits (92), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 5/73 (6%)
Query: 1088 TNVNECESHPCQNDGSCLDDPGTFRCVCMPGF--TGTQCETDIDECA-SNPCLNGGICND 1144
+++EC+ G C++ G++RC C G+ G +C D DEC+ NPC NG C +
Sbjct: 3 VDMDECKEPDVCKHGQCINTDGSYRCECPFGYILAGNEC-VDTDECSVGNPCGNG-TCKN 60
Query: 1145 LINTFKCACPIGF 1157
+I F+C C GF
Sbjct: 61 VIGGFECTCEEGF 73
Score = 38.9 bits (89), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Query: 112 DIIECVD-DPCVHGECFNTHGSYTFQMIFIFFTNQYSWFLI----AGSPCEHDGTCVNTP 166
D+ EC + D C HG+C NT GSY + F + G+PC +GTC N
Sbjct: 4 DMDECKEPDVCKHGQCINTDGSYRCECPFGYILAGNECVDTDECSVGNPC-GNGTCKNVI 62
Query: 167 GSFACNCTQGF 177
G F C C +GF
Sbjct: 63 GGFECTCEEGF 73
Score = 37.7 bits (86), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 5/73 (6%)
Query: 1315 TNINECASNPCANGGVCVDLIDGFKCECPRGYYDA--RCLSDVDECA-SDPCLNGGTCED 1371
+++EC G C++ ++CECP GY A C+ D DEC+ +PC N GTC++
Sbjct: 3 VDMDECKEPDVCKHGQCINTDGSYRCECPFGYILAGNECV-DTDECSVGNPCGN-GTCKN 60
Query: 1372 GLNQFICHCKPGY 1384
+ F C C+ G+
Sbjct: 61 VIGGFECTCEEGF 73
Score = 37.4 bits (85), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 7/69 (10%)
Query: 910 PNRCQHGARCTPSANFQDFACHCGVGW--TGRYCNEDVDECQLSSPCRNGATCHNTNGSY 967
P+ C+HG +++ C C G+ G C D DEC + +PC NG TC N G +
Sbjct: 11 PDVCKHGQCINTDGSYR---CECPFGYILAGNECV-DTDECSVGNPCGNG-TCKNVIGGF 65
Query: 968 LCECAKGYE 976
C C +G+E
Sbjct: 66 ECTCEEGFE 74
Score = 36.2 bits (82), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Query: 1277 ININECYSNPCRNGAKCVDGINRYSCECLPGY--TGLHCETNINECA-SNPCANGGVCVD 1333
++++EC +C++ Y CEC GY G C + +EC+ NPC N G C +
Sbjct: 3 VDMDECKEPDVCKHGQCINTDGSYRCECPFGYILAGNEC-VDTDECSVGNPCGN-GTCKN 60
Query: 1334 LIDGFKCECPRGY 1346
+I GF+C C G+
Sbjct: 61 VIGGFECTCEEGF 73
Score = 34.3 bits (77), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 41/73 (56%), Gaps = 7/73 (9%)
Query: 302 DVDECSIRPSVCHNGATCTNSVGGFSCICVNGW--TGPDCSLNIDDCA-GAACFNGATCI 358
D+DEC P VC +G C N+ G + C C G+ G +C ++ D+C+ G C NG TC
Sbjct: 4 DMDECK-EPDVCKHGQ-CINTDGSYRCECPFGYILAGNEC-VDTDECSVGNPCGNG-TCK 59
Query: 359 DRVGSFYCQCTPG 371
+ +G F C C G
Sbjct: 60 NVIGGFECTCEEG 72
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Query: 1212 CHRGECIDGENSFTCACHPGF--TGALCNTQLDECA-SNPCQFGGQCEDLINGYQCRCKP 1268
C G+CI+ + S+ C C G+ G C DEC+ NPC G C+++I G++C C+
Sbjct: 14 CKHGQCINTDGSYRCECPFGYILAGNEC-VDTDECSVGNPCG-NGTCKNVIGGFECTCEE 71
Query: 1269 G 1269
G
Sbjct: 72 G 72
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 1391 FDIDECGS-NPCQHGGICTDHLNGYTCECQIGYTGINCE-INIDDCAF-KPCRHGGTCID 1447
D+DEC + C+HG C + Y CEC GY E ++ D+C+ PC + GTC +
Sbjct: 3 VDMDECKEPDVCKHG-QCINTDGSYRCECPFGYILAGNECVDTDECSVGNPCGN-GTCKN 60
Query: 1448 LVNAYKCVCAKA 1459
++ ++C C +
Sbjct: 61 VIGGFECTCEEG 72
Score = 32.3 bits (72), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 42/74 (56%), Gaps = 7/74 (9%)
Query: 264 NIDDCPG-NLCQNGATCMDGINKYSCLCLATY--TGDLCEQDVDECSIRPSVCHNGATCT 320
++D+C ++C++G C++ Y C C Y G+ C D DECS+ + C NG TC
Sbjct: 4 DMDECKEPDVCKHGQ-CINTDGSYRCECPFGYILAGNEC-VDTDECSVG-NPCGNG-TCK 59
Query: 321 NSVGGFSCICVNGW 334
N +GGF C C G+
Sbjct: 60 NVIGGFECTCEEGF 73
Score = 32.0 bits (71), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Query: 1354 DVDECASDPCLNGGTCEDGLNQFICHCKPGY--GGKRCEFDIDECG-SNPCQHGGICTDH 1410
D+DEC G C + + C C GY G C D DEC NPC +G C +
Sbjct: 4 DMDECKEPDVCKHGQCINTDGSYRCECPFGYILAGNEC-VDTDECSVGNPCGNG-TCKNV 61
Query: 1411 LNGYTCECQIGY 1422
+ G+ C C+ G+
Sbjct: 62 IGGFECTCEEGF 73
Score = 31.6 bits (70), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 39/103 (37%), Gaps = 35/103 (33%)
Query: 982 INTDDCASFPCQNGGTCLDEVGDYSCLCVDGF--SGKHCEVDIDECS-SNPCHNGATCNQ 1038
++ D+C G C++ G Y C C G+ +G C VD DECS NPC NG
Sbjct: 3 VDMDECKEPDVCKHGQCINTDGSYRCECPFGYILAGNEC-VDTDECSVGNPCGNG----- 56
Query: 1039 FQMIFIFFTNQYSWFLIAGSPCEHDGTCVNTPGSFACNCTQGF 1081
TC N G F C C +GF
Sbjct: 57 --------------------------TCKNVIGGFECTCEEGF 73
Score = 31.6 bits (70), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 30/69 (43%), Gaps = 12/69 (17%)
Query: 1620 GICTDHLNGYTCECQIGYTGGYISLNMSTSTLGIICEINVPDCLPGACHNNGTCVDKVGG 1679
G C + Y CEC GY G C ++ +C G NGTC + +GG
Sbjct: 17 GQCINTDGSYRCECPFGYI-----------LAGNEC-VDTDECSVGNPCGNGTCKNVIGG 64
Query: 1680 FECRCPPGF 1688
FEC C GF
Sbjct: 65 FECTCEEGF 73
Score = 30.8 bits (68), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Query: 1164 INIDDCVSSPCHNGGICKDSIAGYTCECLAGF--TGMSCETNINDCASNPCHRGECIDGE 1221
+++D+C G C ++ Y CEC G+ G C NPC G C +
Sbjct: 3 VDMDECKEPDVCKHGQCINTDGSYRCECPFGYILAGNECVDTDECSVGNPCGNGTCKNVI 62
Query: 1222 NSFTCACHPGF 1232
F C C GF
Sbjct: 63 GGFECTCEEGF 73
>pdb|1IOE|L Chain L, Human Coagulation Factor Xa In Complex With M55532
pdb|1IQE|L Chain L, Human Coagulation Factor Xa In Complex With M55590
pdb|1IQF|L Chain L, Human Coagulation Factor Xa In Complex With M55165
pdb|1IQG|L Chain L, Human Coagulation Factor Xa In Complex With M55159
pdb|1IQH|L Chain L, Human Coagulation Factor Xa In Complex With M55143
pdb|1IQI|L Chain L, Human Coagulation Factor Xa In Complex With M55125
pdb|1IQJ|L Chain L, Human Coagulation Factor Xa In Complex With M55124
pdb|1IQK|L Chain L, Human Coagulation Factor Xa In Complex With M55113
pdb|1IQL|L Chain L, Human Coagulation Factor Xa In Complex With M54476
pdb|1IQM|L Chain L, Human Coagulation Factor Xa In Complex With M54471
pdb|1IQN|L Chain L, Human Coagulation Factor Xa In Complex With M55192
pdb|1C5M|F Chain F, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|4A7I|A Chain A, Factor Xa In Complex With A Potent 2-Amino-Ethane
Sulfonamide Inhibitor
Length = 96
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 1167 DDCVSSPCHNGGICKDSIAGYTCECLAGFTGMSCETNINDCAS---NPCHRGECIDGENS 1223
D C +SPC N G CKD + YTC CL GF G +CE S C + C + +NS
Sbjct: 5 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQF-CHEEQNS 63
Query: 1224 FTCACHPGFTGA 1235
C+C G+T A
Sbjct: 64 VVCSCARGYTLA 75
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 1353 SDVDECASDPCLNGGTCEDGLNQFICHCKPGYGGKRCE-FDIDECGSNPCQHGGICTDHL 1411
D D+C + PC N G C+DGL ++ C C G+ GK CE F C + C +
Sbjct: 2 KDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQ 61
Query: 1412 NGYTCECQIGYT 1423
N C C GYT
Sbjct: 62 NSVVCSCARGYT 73
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 27/36 (75%)
Query: 985 DDCASFPCQNGGTCLDEVGDYSCLCVDGFSGKHCEV 1020
D C + PCQN G C D +G+Y+C C++GF GK+CE+
Sbjct: 5 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCEL 40
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
Query: 1091 NECESHPCQNDGSCLDDPGTFRCVCMPGFTGTQCETDIDECASNPCLNGG----ICNDLI 1146
++CE+ PCQN G C D G + C C+ GF G CE + S L+ G C++
Sbjct: 5 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCS---LDNGDCDQFCHEEQ 61
Query: 1147 NTFKCACPIGFT 1158
N+ C+C G+T
Sbjct: 62 NSVVCSCARGYT 73
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 1280 NECYSNPCRNGAKCVDGINRYSCECLPGYTGLHCETNINE-CASNPCANGGVCVDLIDGF 1338
++C ++PC+N KC DG+ Y+C CL G+ G +CE + C+ + C + +
Sbjct: 5 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSV 64
Query: 1339 KCECPRGY 1346
C C RGY
Sbjct: 65 VCSCARGY 72
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 27/37 (72%)
Query: 670 NECYSNPCQHAGTCEDRIADYACYCLPMWNGKNCDLY 706
++C ++PCQ+ G C+D + +Y C CL + GKNC+L+
Sbjct: 5 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELF 41
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 25/38 (65%)
Query: 1392 DIDECGSNPCQHGGICTDHLNGYTCECQIGYTGINCEI 1429
D D+C ++PCQ+ G C D L YTC C G+ G NCE+
Sbjct: 3 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCEL 40
Score = 37.4 bits (85), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Query: 154 SPCEHDGTCVNTPGSFACNCTQGFTGPRCETNVNE-CESHPCQNDGSCLDDPGTFRCVCM 212
SPC++ G C + G + C C +GF G CE + C D C ++ + VC
Sbjct: 10 SPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSV--VCS 67
Query: 213 CEPGYTGQNCESKYVPCDPSPC 234
C GYT + +P P PC
Sbjct: 68 CARGYTLADNGKACIPTGPYPC 89
Score = 37.4 bits (85), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Query: 187 NECESHPCQNDGSCLDDPGTFRCVCMCEPGYTGQNCE 223
++CE+ PCQN G C D G + C C+ G+ G+NCE
Sbjct: 5 DQCETSPCQNQGKCKDGLGEYTCTCL--EGFEGKNCE 39
Score = 37.4 bits (85), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Query: 943 EDVDECQLSSPCRNGATCHNTNGSYLCECAKGYEGRDCLINTDDCASFPCQNGG---TCL 999
+D D+C+ +SPC+N C + G Y C C +G+EG++C + T S NG C
Sbjct: 2 KDGDQCE-TSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSL--DNGDCDQFCH 58
Query: 1000 DEVGDYSCLCVDGFS 1014
+E C C G++
Sbjct: 59 EEQNSVVCSCARGYT 73
Score = 37.4 bits (85), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 37 ANSCDSFPCMNGGTCTLKSLDRYTCTCAPGFTGSQCEL--QDHCASSPCRNGAVCTSLED 94
+ C++ PC N G C L YTCTC GF G CEL + C+ C ++
Sbjct: 4 GDQCETSPCQNQGKCK-DGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQN 62
Query: 95 TYECDCAPGFV 105
+ C CA G+
Sbjct: 63 SVVCSCARGYT 73
Score = 37.4 bits (85), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 1242 DECASNPCQFGGQCEDLINGYQCRCKPGTSGTNCEININE-CYSNPCRNGAKCVDGINRY 1300
D+C ++PCQ G+C+D + Y C C G G NCE+ + C + C + N
Sbjct: 5 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSV 64
Query: 1301 SCECLPGYT 1309
C C GYT
Sbjct: 65 VCSCARGYT 73
Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Query: 1127 DIDECASNPCLNGGICNDLINTFKCACPIGFTGSHCQINIDDCVSSPCHNGG---ICKDS 1183
D D+C ++PC N G C D + + C C GF G +C++ S NG C +
Sbjct: 3 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSL--DNGDCDQFCHEE 60
Query: 1184 IAGYTCECLAGFT 1196
C C G+T
Sbjct: 61 QNSVVCSCARGYT 73
Score = 35.8 bits (81), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
Query: 266 DDCPGNLCQNGATCMDGINKYSCLCLATYTGDLCEQDVDE-CSIRPSVCHNGATCTNSVG 324
D C + CQN C DG+ +Y+C CL + G CE + CS+ C C
Sbjct: 5 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQ--FCHEEQN 62
Query: 325 GFSCICVNGWTGPD 338
C C G+T D
Sbjct: 63 SVVCSCARGYTLAD 76
Score = 34.7 bits (78), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 1058 SPCEHDGTCVNTPGSFACNCTQGFTGPRCETNVNE-CESHPCQNDGSCLDDPGTFRCVCM 1116
SPC++ G C + G + C C +GF G CE + C D C ++ + C C
Sbjct: 10 SPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCA 69
Query: 1117 PGFT 1120
G+T
Sbjct: 70 RGYT 73
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Query: 229 CDPSPCQNGGVCRELDNL-NYECECQSGYRGKNCE 262
C+ SPCQN G C+ D L Y C C G+ GKNCE
Sbjct: 7 CETSPCQNQGKCK--DGLGEYTCTCLEGFEGKNCE 39
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 301 QDVDECSIRPSVCHNGATCTNSVGGFSCICVNGWTGPDCSL 341
+D D+C P C N C + +G ++C C+ G+ G +C L
Sbjct: 2 KDGDQCETSP--CQNQGKCKDGLGEYTCTCLEGFEGKNCEL 40
Score = 32.7 bits (73), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 629 GYDCDSNPCQNGGFCRSKEGGGYRCDCPPGATGTHCELDSRNEC 672
G C+++PCQN G C+ G Y C C G G +CEL +R C
Sbjct: 4 GDQCETSPCQNQGKCKDGLGE-YTCTCLEGFEGKNCELFTRKLC 46
Score = 30.8 bits (68), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 28/71 (39%), Gaps = 5/71 (7%)
Query: 344 DDCAGAACFNGATCIDRVGSFYCQCTPGKTGLLCHL--EDACTSNPCHADAICDTNPIIN 401
D C + C N C D +G + C C G G C L C+ + D C
Sbjct: 5 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEE---Q 61
Query: 402 GSYTCSCASGY 412
S CSCA GY
Sbjct: 62 NSVVCSCARGY 72
Score = 30.4 bits (67), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 76 DHCASSPCRNGAVCTSLEDTYECDCAPGFVGQTCS 110
D C +SPC+N C Y C C GF G+ C
Sbjct: 5 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCE 39
Score = 30.4 bits (67), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Query: 1318 NECASNPCANGGVCVDLIDGFKCECPRGYYDARC-LSDVDECASDPCLNGGTCEDGLNQF 1376
++C ++PC N G C D + + C C G+ C L C+ D C + N
Sbjct: 5 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSV 64
Query: 1377 ICHCKPGY 1384
+C C GY
Sbjct: 65 VCSCARGY 72
>pdb|1BF9|A Chain A, N-Terminal Egf-Like Domain From Human Factor Vii, Nmr, 23
Structures
Length = 41
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 27/38 (71%)
Query: 1353 SDVDECASDPCLNGGTCEDGLNQFICHCKPGYGGKRCE 1390
SD D+CAS PC NGG+C+D L +IC C P + G+ CE
Sbjct: 1 SDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCE 38
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 24/37 (64%)
Query: 1167 DDCVSSPCHNGGICKDSIAGYTCECLAGFTGMSCETN 1203
D C SSPC NGG CKD + Y C CL F G +CET+
Sbjct: 4 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETH 40
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 29/37 (78%)
Query: 670 NECYSNPCQHAGTCEDRIADYACYCLPMWNGKNCDLY 706
++C S+PCQ+ G+C+D++ Y C+CLP + G+NC+ +
Sbjct: 4 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETH 40
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 25/36 (69%)
Query: 985 DDCASFPCQNGGTCLDEVGDYSCLCVDGFSGKHCEV 1020
D CAS PCQNGG+C D++ Y C C+ F G++CE
Sbjct: 4 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCET 39
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 24/39 (61%)
Query: 1392 DIDECGSNPCQHGGICTDHLNGYTCECQIGYTGINCEIN 1430
D D+C S+PCQ+GG C D L Y C C + G NCE +
Sbjct: 2 DGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETH 40
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 24/37 (64%)
Query: 1242 DECASNPCQFGGQCEDLINGYQCRCKPGTSGTNCEIN 1278
D+CAS+PCQ GG C+D + Y C C P G NCE +
Sbjct: 4 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETH 40
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 25/39 (64%)
Query: 1088 TNVNECESHPCQNDGSCLDDPGTFRCVCMPGFTGTQCET 1126
++ ++C S PCQN GSC D ++ C C+P F G CET
Sbjct: 1 SDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCET 39
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 25/37 (67%)
Query: 1280 NECYSNPCRNGAKCVDGINRYSCECLPGYTGLHCETN 1316
++C S+PC+NG C D + Y C CLP + G +CET+
Sbjct: 4 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETH 40
Score = 39.7 bits (91), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 26/40 (65%)
Query: 1126 TDIDECASNPCLNGGICNDLINTFKCACPIGFTGSHCQIN 1165
+D D+CAS+PC NGG C D + ++ C C F G +C+ +
Sbjct: 1 SDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETH 40
Score = 37.4 bits (85), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
Query: 184 TNVNECESHPCQNDGSCLDDPGTFRCVCMCEPGYTGQNCES 224
++ ++C S PCQN GSC D ++ +C C P + G+NCE+
Sbjct: 1 SDGDQCASSPCQNGGSCKDQLQSY--ICFCLPAFEGRNCET 39
Score = 37.4 bits (85), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 20/34 (58%)
Query: 76 DHCASSPCRNGAVCTSLEDTYECDCAPGFVGQTC 109
D CASSPC+NG C +Y C C P F G+ C
Sbjct: 4 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNC 37
Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 944 DVDECQLSSPCRNGATCHNTNGSYLCECAKGYEGRDC 980
D D+C SSPC+NG +C + SY+C C +EGR+C
Sbjct: 2 DGDQC-ASSPCQNGGSCKDQLQSYICFCLPAFEGRNC 37
Score = 35.0 bits (79), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 266 DDCPGNLCQNGATCMDGINKYSCLCLATYTGDLCE 300
D C + CQNG +C D + Y C CL + G CE
Sbjct: 4 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCE 38
Score = 34.7 bits (78), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 435 DDCAFKPCRHGGTCIDLVNAYKCVCQVPYTGHDCH 469
D CA PC++GG+C D + +Y C C + G +C
Sbjct: 4 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCE 38
Score = 34.7 bits (78), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 868 DDCAFKPCRHGGTCIDLVNAYKCVCQVPYTGHDCH 902
D CA PC++GG+C D + +Y C C + G +C
Sbjct: 4 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCE 38
Score = 34.3 bits (77), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 37 ANSCDSFPCMNGGTCTLKSLDRYTCTCAPGFTGSQCE 73
+ C S PC NGG+C L Y C C P F G CE
Sbjct: 3 GDQCASSPCQNGGSCK-DQLQSYICFCLPAFEGRNCE 38
Score = 32.0 bits (71), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 1432 DDCAFKPCRHGGTCIDLVNAYKCVCAKAGNHR 1463
D CA PC++GG+C D + +Y C C A R
Sbjct: 4 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGR 35
Score = 31.6 bits (70), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Query: 229 CDPSPCQNGGVCRELDNL-NYECECQSGYRGKNCE 262
C SPCQNGG C+ D L +Y C C + G+NCE
Sbjct: 6 CASSPCQNGGSCK--DQLQSYICFCLPAFEGRNCE 38
Score = 30.8 bits (68), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 520 DINECLSNPCSSHGTLDCVQLVNNYHCNCRPGYMGRHCEV 559
D ++C S+PC + G+ C + +Y C C P + GR+CE
Sbjct: 2 DGDQCASSPCQNGGS--CKDQLQSYICFCLPAFEGRNCET 39
>pdb|1G2L|B Chain B, Factor Xa Inhibitor Complex
pdb|1G2M|B Chain B, Factor Xa Inhibitor Complex
Length = 94
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 1167 DDCVSSPCHNGGICKDSIAGYTCECLAGFTGMSCETNINDCAS---NPCHRGECIDGENS 1223
D C +SPC N G CKD + YTC CL GF G +CE S C + C + +NS
Sbjct: 3 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQF-CHEEQNS 61
Query: 1224 FTCACHPGFTGA 1235
C+C G+T A
Sbjct: 62 VVCSCARGYTLA 73
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 1354 DVDECASDPCLNGGTCEDGLNQFICHCKPGYGGKRCE-FDIDECGSNPCQHGGICTDHLN 1412
D D+C + PC N G C+DGL ++ C C G+ GK CE F C + C + N
Sbjct: 1 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQN 60
Query: 1413 GYTCECQIGYT 1423
C C GYT
Sbjct: 61 SVVCSCARGYT 71
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 27/36 (75%)
Query: 985 DDCASFPCQNGGTCLDEVGDYSCLCVDGFSGKHCEV 1020
D C + PCQN G C D +G+Y+C C++GF GK+CE+
Sbjct: 3 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCEL 38
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
Query: 1091 NECESHPCQNDGSCLDDPGTFRCVCMPGFTGTQCETDIDECASNPCLNGG----ICNDLI 1146
++CE+ PCQN G C D G + C C+ GF G CE + S L+ G C++
Sbjct: 3 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCS---LDNGDCDQFCHEEQ 59
Query: 1147 NTFKCACPIGFT 1158
N+ C+C G+T
Sbjct: 60 NSVVCSCARGYT 71
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 1280 NECYSNPCRNGAKCVDGINRYSCECLPGYTGLHCETNINE-CASNPCANGGVCVDLIDGF 1338
++C ++PC+N KC DG+ Y+C CL G+ G +CE + C+ + C + +
Sbjct: 3 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSV 62
Query: 1339 KCECPRGYYDA 1349
C C RGY A
Sbjct: 63 VCSCARGYTLA 73
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 27/37 (72%)
Query: 670 NECYSNPCQHAGTCEDRIADYACYCLPMWNGKNCDLY 706
++C ++PCQ+ G C+D + +Y C CL + GKNC+L+
Sbjct: 3 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELF 39
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 25/38 (65%)
Query: 1392 DIDECGSNPCQHGGICTDHLNGYTCECQIGYTGINCEI 1429
D D+C ++PCQ+ G C D L YTC C G+ G NCE+
Sbjct: 1 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCEL 38
Score = 37.4 bits (85), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Query: 187 NECESHPCQNDGSCLDDPGTFRCVCMCEPGYTGQNCE 223
++CE+ PCQN G C D G + C C+ G+ G+NCE
Sbjct: 3 DQCETSPCQNQGKCKDGLGEYTCTCL--EGFEGKNCE 37
Score = 37.4 bits (85), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 1242 DECASNPCQFGGQCEDLINGYQCRCKPGTSGTNCEININE-CYSNPCRNGAKCVDGINRY 1300
D+C ++PCQ G+C+D + Y C C G G NCE+ + C + C + N
Sbjct: 3 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSV 62
Query: 1301 SCECLPGYT 1309
C C GYT
Sbjct: 63 VCSCARGYT 71
Score = 37.4 bits (85), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Query: 154 SPCEHDGTCVNTPGSFACNCTQGFTGPRCETNVNE-CESHPCQNDGSCLDDPGTFRCVCM 212
SPC++ G C + G + C C +GF G CE + C D C ++ + VC
Sbjct: 8 SPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSV--VCS 65
Query: 213 CEPGYTGQNCESKYVPCDPSPC 234
C GYT + +P P PC
Sbjct: 66 CARGYTLADNGKACIPTGPYPC 87
Score = 37.0 bits (84), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 37 ANSCDSFPCMNGGTCTLKSLDRYTCTCAPGFTGSQCEL--QDHCASSPCRNGAVCTSLED 94
+ C++ PC N G C L YTCTC GF G CEL + C+ C ++
Sbjct: 2 GDQCETSPCQNQGKCK-DGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQN 60
Query: 95 TYECDCAPGFV 105
+ C CA G+
Sbjct: 61 SVVCSCARGYT 71
Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 944 DVDECQLSSPCRNGATCHNTNGSYLCECAKGYEGRDCLINTDDCASFPCQNGG---TCLD 1000
D D+C+ +SPC+N C + G Y C C +G+EG++C + T S NG C +
Sbjct: 1 DGDQCE-TSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSL--DNGDCDQFCHE 57
Query: 1001 EVGDYSCLCVDGFS 1014
E C C G++
Sbjct: 58 EQNSVVCSCARGYT 71
Score = 36.6 bits (83), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Query: 1127 DIDECASNPCLNGGICNDLINTFKCACPIGFTGSHCQINIDDCVSSPCHNGG---ICKDS 1183
D D+C ++PC N G C D + + C C GF G +C++ S NG C +
Sbjct: 1 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSL--DNGDCDQFCHEE 58
Query: 1184 IAGYTCECLAGFT 1196
C C G+T
Sbjct: 59 QNSVVCSCARGYT 71
Score = 35.4 bits (80), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
Query: 266 DDCPGNLCQNGATCMDGINKYSCLCLATYTGDLCEQDVDE-CSIRPSVCHNGATCTNSVG 324
D C + CQN C DG+ +Y+C CL + G CE + CS+ C C
Sbjct: 3 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQ--FCHEEQN 60
Query: 325 GFSCICVNGWTGPD 338
C C G+T D
Sbjct: 61 SVVCSCARGYTLAD 74
Score = 34.3 bits (77), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 1058 SPCEHDGTCVNTPGSFACNCTQGFTGPRCETNVNE-CESHPCQNDGSCLDDPGTFRCVCM 1116
SPC++ G C + G + C C +GF G CE + C D C ++ + C C
Sbjct: 8 SPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCA 67
Query: 1117 PGFT 1120
G+T
Sbjct: 68 RGYT 71
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Query: 229 CDPSPCQNGGVCRELDNL-NYECECQSGYRGKNCE 262
C+ SPCQN G C+ D L Y C C G+ GKNCE
Sbjct: 5 CETSPCQNQGKCK--DGLGEYTCTCLEGFEGKNCE 37
Score = 32.7 bits (73), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 629 GYDCDSNPCQNGGFCRSKEGGGYRCDCPPGATGTHCELDSRNEC 672
G C+++PCQN G C+ G Y C C G G +CEL +R C
Sbjct: 2 GDQCETSPCQNQGKCKDGLGE-YTCTCLEGFEGKNCELFTRKLC 44
Score = 32.3 bits (72), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 302 DVDECSIRPSVCHNGATCTNSVGGFSCICVNGWTGPDCSL 341
D D+C P C N C + +G ++C C+ G+ G +C L
Sbjct: 1 DGDQCETSP--CQNQGKCKDGLGEYTCTCLEGFEGKNCEL 38
Score = 30.8 bits (68), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 28/71 (39%), Gaps = 5/71 (7%)
Query: 344 DDCAGAACFNGATCIDRVGSFYCQCTPGKTGLLCHL--EDACTSNPCHADAICDTNPIIN 401
D C + C N C D +G + C C G G C L C+ + D C
Sbjct: 3 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEE---Q 59
Query: 402 GSYTCSCASGY 412
S CSCA GY
Sbjct: 60 NSVVCSCARGY 70
>pdb|2PUQ|L Chain L, Crystal Structure Of Active Site Inhibited Coagulation
Factor Viia In Complex With Soluble Tissue Factor
Length = 94
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 8/84 (9%)
Query: 1357 ECASDPCLNGGTCEDGLNQFICHCKPGYGGKRCEFDIDECGSNPCQHGG---ICTDHL-N 1412
+CAS PC NGG+C+D L +IC C P + G+ CE D+ ++GG C+DH
Sbjct: 1 QCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGT 60
Query: 1413 GYTCECQIGYT----GINCEINID 1432
+C C GY+ G++C ++
Sbjct: 61 KRSCRCHEGYSLLADGVSCTPTVE 84
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 25/39 (64%)
Query: 1168 DCVSSPCHNGGICKDSIAGYTCECLAGFTGMSCETNIND 1206
C SSPC NGG CKD + Y C CL F G +CET+ +D
Sbjct: 1 QCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 39
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 28/36 (77%)
Query: 671 ECYSNPCQHAGTCEDRIADYACYCLPMWNGKNCDLY 706
+C S+PCQ+ G+C+D++ Y C+CLP + G+NC+ +
Sbjct: 1 QCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETH 36
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 26/39 (66%)
Query: 986 DCASFPCQNGGTCLDEVGDYSCLCVDGFSGKHCEVDIDE 1024
CAS PCQNGG+C D++ Y C C+ F G++CE D+
Sbjct: 1 QCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 39
Score = 43.9 bits (102), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Query: 951 SSPCRNGATCHNTNGSYLCECAKGYEGRDCLINTDDCASFPCQNGG---TCLDEVG-DYS 1006
SSPC+NG +C + SY+C C +EGR+C + DD +NGG C D G S
Sbjct: 4 SSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGTKRS 63
Query: 1007 CLCVDGFS 1014
C C +G+S
Sbjct: 64 CRCHEGYS 71
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
Query: 1092 ECESHPCQNDGSCLDDPGTFRCVCMPGFTGTQCETDIDECASNPCLNGG---ICNDLINT 1148
+C S PCQN GSC D ++ C C+P F G CET D+ NGG C+D T
Sbjct: 1 QCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGT 60
Query: 1149 FK-CACPIGFTGSHCQINIDDCVSSPC 1174
+ C C G++ ++ V PC
Sbjct: 61 KRSCRCHEGYSLLADGVSCTPTVEYPC 87
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 8/84 (9%)
Query: 1130 ECASNPCLNGGICNDLINTFKCACPIGFTGSHCQINIDDCVSSPCHNGG---ICKDSI-A 1185
+CAS+PC NGG C D + ++ C C F G +C+ + DD + NGG C D
Sbjct: 1 QCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGT 60
Query: 1186 GYTCECLAGFT----GMSCETNIN 1205
+C C G++ G+SC +
Sbjct: 61 KRSCRCHEGYSLLADGVSCTPTVE 84
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 24/39 (61%)
Query: 1395 ECGSNPCQHGGICTDHLNGYTCECQIGYTGINCEINIDD 1433
+C S+PCQ+GG C D L Y C C + G NCE + DD
Sbjct: 1 QCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 39
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 1243 ECASNPCQFGGQCEDLINGYQCRCKPGTSGTNCEININECYSNPCRNGA---KCVDGI-N 1298
+CAS+PCQ GG C+D + Y C C P G NCE + ++ NG C D
Sbjct: 1 QCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGT 60
Query: 1299 RYSCECLPGYTGL 1311
+ SC C GY+ L
Sbjct: 61 KRSCRCHEGYSLL 73
Score = 40.4 bits (93), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 26/39 (66%)
Query: 1281 ECYSNPCRNGAKCVDGINRYSCECLPGYTGLHCETNINE 1319
+C S+PC+NG C D + Y C CLP + G +CET+ ++
Sbjct: 1 QCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 39
Score = 37.7 bits (86), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Query: 188 ECESHPCQNDGSCLDDPGTFRCVCMCEPGYTGQNCESKYVPCDPSPCQNGG---VCRELD 244
+C S PCQN GSC D ++ +C C P + G+NCE+ +NGG C +
Sbjct: 1 QCASSPCQNGGSCKDQLQSY--ICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHT 58
Query: 245 NLNYECECQSGY 256
C C GY
Sbjct: 59 GTKRSCRCHEGY 70
Score = 36.2 bits (82), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 77 HCASSPCRNGAVCTSLEDTYECDCAPGFVGQTC---SEDIIECVDD 119
CASSPC+NG C +Y C C P F G+ C +D + CV++
Sbjct: 1 QCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNE 46
Score = 35.0 bits (79), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Query: 229 CDPSPCQNGGVCRELDNL-NYECECQSGYRGKNCEENIDD 267
C SPCQNGG C+ D L +Y C C + G+NCE + DD
Sbjct: 2 CASSPCQNGGSCK--DQLQSYICFCLPAFEGRNCETHKDD 39
Score = 33.9 bits (76), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 267 DCPGNLCQNGATCMDGINKYSCLCLATYTGDLCEQDVDE 305
C + CQNG +C D + Y C CL + G CE D+
Sbjct: 1 QCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 39
Score = 33.9 bits (76), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 40 CDSFPCMNGGTCTLKSLDRYTCTCAPGFTGSQCE 73
C S PC NGG+C L Y C C P F G CE
Sbjct: 2 CASSPCQNGGSCK-DQLQSYICFCLPAFEGRNCE 34
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 152 AGSPCEHDGTCVNTPGSFACNCTQGFTGPRCETNVNECESHPCQNDG---SCLDDPGTFR 208
A SPC++ G+C + S+ C C F G CET+ ++ +N G C D GT R
Sbjct: 3 ASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGTKR 62
Query: 209 CVCMCEPGYT 218
C C GY+
Sbjct: 63 -SCRCHEGYS 71
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 436 DCAFKPCRHGGTCIDLVNAYKCVCQVPYTGHDCHQKLD 473
CA PC++GG+C D + +Y C C + G +C D
Sbjct: 1 QCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKD 38
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 869 DCAFKPCRHGGTCIDLVNAYKCVCQVPYTGHDCHQKLD 906
CA PC++GG+C D + +Y C C + G +C D
Sbjct: 1 QCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKD 38
Score = 32.0 bits (71), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 1056 AGSPCEHDGTCVNTPGSFACNCTQGFTGPRCETNVNECESHPCQNDG---SCLDDPGTFR 1112
A SPC++ G+C + S+ C C F G CET+ ++ +N G C D GT R
Sbjct: 3 ASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGTKR 62
Query: 1113 -CVCMPGFT 1120
C C G++
Sbjct: 63 SCRCHEGYS 71
Score = 30.4 bits (67), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 1319 ECASNPCANGGVCVDLIDGFKCECPRGYYDARCLSDVDE 1357
+CAS+PC NGG C D + + C C + C + D+
Sbjct: 1 QCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 39
>pdb|3ENS|A Chain A, Crystal Structure Of Human Fxa In Complex With Methyl
(2z)-3-[(3-
Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-(2-
oxo-2- Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate
pdb|3ENS|C Chain C, Crystal Structure Of Human Fxa In Complex With Methyl
(2z)-3-[(3-
Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-(2-
oxo-2- Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate
pdb|3HPT|A Chain A, Crystal Structure Of Human Fxa In Complex With
(S)-2-Cyano-1-(2-
Methylbenzofuran-5-Yl)-3-(2-Oxo-1-(2-Oxo-2-(Pyrrolidin-1-
Yl)ethyl) Azepan-3-Yl)guanidine
pdb|3HPT|C Chain C, Crystal Structure Of Human Fxa In Complex With
(S)-2-Cyano-1-(2-
Methylbenzofuran-5-Yl)-3-(2-Oxo-1-(2-Oxo-2-(Pyrrolidin-1-
Yl)ethyl) Azepan-3-Yl)guanidine
pdb|3K9X|A Chain A, X-Ray Crystal Structure Of Human Fxa In Complex With
(S)-N-((2- Methylbenzofuran-5-Ylamino)(2-Oxo-1-(2-Oxo-2-
(Pyrrolidin-1-Yl) Ethyl)azepan-3-
Ylamino)methylene)nicotinamide
pdb|3K9X|C Chain C, X-Ray Crystal Structure Of Human Fxa In Complex With
(S)-N-((2- Methylbenzofuran-5-Ylamino)(2-Oxo-1-(2-Oxo-2-
(Pyrrolidin-1-Yl) Ethyl)azepan-3-
Ylamino)methylene)nicotinamide
pdb|3SW2|A Chain A, X-Ray Crystal Structure Of Human Fxa In Complex With
6-Chloro-N-((3s)-
2-Oxo-1-(2-Oxo-2-((5s)-8-Oxo-5,6-Dihydro-1h-1,
5-Methanopyrido[1,2-
A][1,5]diazocin-3(2h,4h,
8h)-Yl)ethyl)piperidin-3-Yl)naphthalene-2- Sulfonamide
Length = 94
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 1167 DDCVSSPCHNGGICKDSIAGYTCECLAGFTGMSCETNINDCAS---NPCHRGECIDGENS 1223
D C +SPC N G CKD + YTC CL GF G +CE S C + C + +NS
Sbjct: 4 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQF-CHEEQNS 62
Query: 1224 FTCACHPGFTGA 1235
C+C G+T A
Sbjct: 63 VVCSCARGYTLA 74
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 1353 SDVDECASDPCLNGGTCEDGLNQFICHCKPGYGGKRCE-FDIDECGSNPCQHGGICTDHL 1411
D D+C + PC N G C+DGL ++ C C G+ GK CE F C + C +
Sbjct: 1 KDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQ 60
Query: 1412 NGYTCECQIGYT 1423
N C C GYT
Sbjct: 61 NSVVCSCARGYT 72
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 27/36 (75%)
Query: 985 DDCASFPCQNGGTCLDEVGDYSCLCVDGFSGKHCEV 1020
D C + PCQN G C D +G+Y+C C++GF GK+CE+
Sbjct: 4 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCEL 39
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
Query: 1091 NECESHPCQNDGSCLDDPGTFRCVCMPGFTGTQCETDIDECASNPCLNGG----ICNDLI 1146
++CE+ PCQN G C D G + C C+ GF G CE + S L+ G C++
Sbjct: 4 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCS---LDNGDCDQFCHEEQ 60
Query: 1147 NTFKCACPIGFT 1158
N+ C+C G+T
Sbjct: 61 NSVVCSCARGYT 72
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 1280 NECYSNPCRNGAKCVDGINRYSCECLPGYTGLHCETNINE-CASNPCANGGVCVDLIDGF 1338
++C ++PC+N KC DG+ Y+C CL G+ G +CE + C+ + C + +
Sbjct: 4 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSV 63
Query: 1339 KCECPRGYYDA 1349
C C RGY A
Sbjct: 64 VCSCARGYTLA 74
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 27/37 (72%)
Query: 670 NECYSNPCQHAGTCEDRIADYACYCLPMWNGKNCDLY 706
++C ++PCQ+ G C+D + +Y C CL + GKNC+L+
Sbjct: 4 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELF 40
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 25/38 (65%)
Query: 1392 DIDECGSNPCQHGGICTDHLNGYTCECQIGYTGINCEI 1429
D D+C ++PCQ+ G C D L YTC C G+ G NCE+
Sbjct: 2 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCEL 39
Score = 37.4 bits (85), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Query: 187 NECESHPCQNDGSCLDDPGTFRCVCMCEPGYTGQNCE 223
++CE+ PCQN G C D G + C C+ G+ G+NCE
Sbjct: 4 DQCETSPCQNQGKCKDGLGEYTCTCL--EGFEGKNCE 38
Score = 37.4 bits (85), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Query: 943 EDVDECQLSSPCRNGATCHNTNGSYLCECAKGYEGRDCLINTDDCASFPCQNGG---TCL 999
+D D+C+ +SPC+N C + G Y C C +G+EG++C + T S NG C
Sbjct: 1 KDGDQCE-TSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSL--DNGDCDQFCH 57
Query: 1000 DEVGDYSCLCVDGFS 1014
+E C C G++
Sbjct: 58 EEQNSVVCSCARGYT 72
Score = 37.4 bits (85), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 1242 DECASNPCQFGGQCEDLINGYQCRCKPGTSGTNCEININE-CYSNPCRNGAKCVDGINRY 1300
D+C ++PCQ G+C+D + Y C C G G NCE+ + C + C + N
Sbjct: 4 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSV 63
Query: 1301 SCECLPGYT 1309
C C GYT
Sbjct: 64 VCSCARGYT 72
Score = 37.4 bits (85), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Query: 154 SPCEHDGTCVNTPGSFACNCTQGFTGPRCETNVNE-CESHPCQNDGSCLDDPGTFRCVCM 212
SPC++ G C + G + C C +GF G CE + C D C ++ + VC
Sbjct: 9 SPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSV--VCS 66
Query: 213 CEPGYTGQNCESKYVPCDPSPC 234
C GYT + +P P PC
Sbjct: 67 CARGYTLADNGKACIPTGPYPC 88
Score = 37.0 bits (84), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 37 ANSCDSFPCMNGGTCTLKSLDRYTCTCAPGFTGSQCEL--QDHCASSPCRNGAVCTSLED 94
+ C++ PC N G C L YTCTC GF G CEL + C+ C ++
Sbjct: 3 GDQCETSPCQNQGKCK-DGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQN 61
Query: 95 TYECDCAPGFV 105
+ C CA G+
Sbjct: 62 SVVCSCARGYT 72
Score = 36.6 bits (83), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Query: 1127 DIDECASNPCLNGGICNDLINTFKCACPIGFTGSHCQINIDDCVSSPCHNGG---ICKDS 1183
D D+C ++PC N G C D + + C C GF G +C++ S NG C +
Sbjct: 2 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSL--DNGDCDQFCHEE 59
Query: 1184 IAGYTCECLAGFT 1196
C C G+T
Sbjct: 60 QNSVVCSCARGYT 72
Score = 35.4 bits (80), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
Query: 266 DDCPGNLCQNGATCMDGINKYSCLCLATYTGDLCEQDVDE-CSIRPSVCHNGATCTNSVG 324
D C + CQN C DG+ +Y+C CL + G CE + CS+ C C
Sbjct: 4 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQ--FCHEEQN 61
Query: 325 GFSCICVNGWTGPD 338
C C G+T D
Sbjct: 62 SVVCSCARGYTLAD 75
Score = 34.3 bits (77), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 1058 SPCEHDGTCVNTPGSFACNCTQGFTGPRCETNVNE-CESHPCQNDGSCLDDPGTFRCVCM 1116
SPC++ G C + G + C C +GF G CE + C D C ++ + C C
Sbjct: 9 SPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCA 68
Query: 1117 PGFT 1120
G+T
Sbjct: 69 RGYT 72
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Query: 229 CDPSPCQNGGVCRELDNL-NYECECQSGYRGKNCE 262
C+ SPCQN G C+ D L Y C C G+ GKNCE
Sbjct: 6 CETSPCQNQGKCK--DGLGEYTCTCLEGFEGKNCE 38
Score = 32.7 bits (73), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 301 QDVDECSIRPSVCHNGATCTNSVGGFSCICVNGWTGPDCSL 341
+D D+C P C N C + +G ++C C+ G+ G +C L
Sbjct: 1 KDGDQCETSP--CQNQGKCKDGLGEYTCTCLEGFEGKNCEL 39
Score = 32.7 bits (73), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 629 GYDCDSNPCQNGGFCRSKEGGGYRCDCPPGATGTHCELDSRNEC 672
G C+++PCQN G C+ G Y C C G G +CEL +R C
Sbjct: 3 GDQCETSPCQNQGKCKDGLGE-YTCTCLEGFEGKNCELFTRKLC 45
Score = 30.8 bits (68), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 28/71 (39%), Gaps = 5/71 (7%)
Query: 344 DDCAGAACFNGATCIDRVGSFYCQCTPGKTGLLCHL--EDACTSNPCHADAICDTNPIIN 401
D C + C N C D +G + C C G G C L C+ + D C
Sbjct: 4 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEE---Q 60
Query: 402 GSYTCSCASGY 412
S CSCA GY
Sbjct: 61 NSVVCSCARGY 71
>pdb|2VJ2|A Chain A, Human Jagged-1, Domains Dsl And Egfs1-3
pdb|2VJ2|B Chain B, Human Jagged-1, Domains Dsl And Egfs1-3
Length = 169
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 46/95 (48%), Gaps = 12/95 (12%)
Query: 890 CVCQVPYTGHDCHQKLDPCVPNR-CQHGARCTPSANFQDFACHCGVGWTGRYCNEDVDEC 948
C CQ + G C D C+P+ C HG P + C C W G+ C++D++ C
Sbjct: 85 CRCQYGWQGLYC----DKCIPHPGCVHGICNEP------WQCLCETNWGGQLCDKDLNYC 134
Query: 949 QLSSPCRNGATCHNTN-GSYLCECAKGYEGRDCLI 982
PC NG TC NT Y C C +GY G +C I
Sbjct: 135 GTHQPCLNGGTCSNTGPDKYQCSCPEGYSGPNCEI 169
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 52/92 (56%), Gaps = 9/92 (9%)
Query: 1075 CNCTQGFTGPRCETNVNECESHPCQNDGSCLDDPGTFRCVCMPGFTGTQCETDIDECASN 1134
C C G+ G C+ +C HP G C + ++C+C + G C+ D++ C ++
Sbjct: 85 CRCQYGWQGLYCD----KCIPHPGCVHGICNE---PWQCLCETNWGGQLCDKDLNYCGTH 137
Query: 1135 -PCLNGGIC-NDLINTFKCACPIGFTGSHCQI 1164
PCLNGG C N + ++C+CP G++G +C+I
Sbjct: 138 QPCLNGGTCSNTGPDKYQCSCPEGYSGPNCEI 169
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 52/100 (52%), Gaps = 13/100 (13%)
Query: 245 NLNYECECQSGYRGKNCEENIDDCPGNLCQNGATCMDGI--NKYSCLCLATYTGDLCEQD 302
L +C CQ G++G C++ I PG C+ GI + CLC + G LC++D
Sbjct: 80 KLPGDCRCQYGWQGLYCDKCIPH-PG--------CVHGICNEPWQCLCETNWGGQLCDKD 130
Query: 303 VDECSIRPSVCHNGATCTNS-VGGFSCICVNGWTGPDCSL 341
++ C C NG TC+N+ + C C G++GP+C +
Sbjct: 131 LNYCGTH-QPCLNGGTCSNTGPDKYQCSCPEGYSGPNCEI 169
Score = 43.9 bits (102), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 66/143 (46%), Gaps = 20/143 (13%)
Query: 1295 DGINRYSCE------CLPGYTGLHCETNINECASNPCANGGVCVDLIDGFKCECPRGYYD 1348
D Y+C+ C+ G+ G C I +P G C D C C G+
Sbjct: 39 DFFGHYACDQNGNKTCMEGWMGPECNRAICRQGCSP--KHGSCKLPGD---CRCQYGWQG 93
Query: 1349 ARCLSDVDECASDPCLNGGTCEDGLNQFICHCKPGYGGKRCEFDIDECGSN-PCQHGGIC 1407
C D+C P G C + + C C+ +GG+ C+ D++ CG++ PC +GG C
Sbjct: 94 LYC----DKCIPHPGCVHGICNE---PWQCLCETNWGGQLCDKDLNYCGTHQPCLNGGTC 146
Query: 1408 TDH-LNGYTCECQIGYTGINCEI 1429
++ + Y C C GY+G NCEI
Sbjct: 147 SNTGPDKYQCSCPEGYSGPNCEI 169
Score = 43.9 bits (102), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 60/126 (47%), Gaps = 13/126 (10%)
Query: 1191 CLAGFTGMSCETNINDCASNPCHRGECIDGENSFTCACHPGFTGALCNTQLDECASNPCQ 1250
C+ G+ G C I +P H + G+ C C G+ G C D+C +P
Sbjct: 54 CMEGWMGPECNRAICRQGCSPKHGSCKLPGD----CRCQYGWQGLYC----DKCIPHPGC 105
Query: 1251 FGGQCEDLINGYQCRCKPGTSGTNCEININECYSN-PCRNGAKCVD-GINRYSCECLPGY 1308
G C + +QC C+ G C+ ++N C ++ PC NG C + G ++Y C C GY
Sbjct: 106 VHGICNEP---WQCLCETNWGGQLCDKDLNYCGTHQPCLNGGTCSNTGPDKYQCSCPEGY 162
Query: 1309 TGLHCE 1314
+G +CE
Sbjct: 163 SGPNCE 168
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 46/93 (49%), Gaps = 10/93 (10%)
Query: 930 CHCGVGWTGRYCNEDVDECQLSSPCRNGATCHNTNGSYLCECAKGYEGRDCLINTDDCAS 989
C C GW G YC D+C C +G N + C C + G+ C + + C +
Sbjct: 85 CRCQYGWQGLYC----DKCIPHPGCVHGIC----NEPWQCLCETNWGGQLCDKDLNYCGT 136
Query: 990 F-PCQNGGTCLDEVGD-YSCLCVDGFSGKHCEV 1020
PC NGGTC + D Y C C +G+SG +CE+
Sbjct: 137 HQPCLNGGTCSNTGPDKYQCSCPEGYSGPNCEI 169
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 59/129 (45%), Gaps = 15/129 (11%)
Query: 1152 ACPIGFTGSHCQINIDDCVSSPCHNGGICKDSIAGYTCECLAGFTGMSCETNINDCASNP 1211
C G+ G C I SP H G CK + G C C G+ G+ C+ C +P
Sbjct: 53 TCMEGWMGPECNRAICRQGCSPKH--GSCK--LPG-DCRCQYGWQGLYCDK----CIPHP 103
Query: 1212 -CHRGECIDGENSFTCACHPGFTGALCNTQLDECASN-PCQFGGQCEDL-INGYQCRCKP 1268
C G C + C C + G LC+ L+ C ++ PC GG C + + YQC C
Sbjct: 104 GCVHGIC---NEPWQCLCETNWGGQLCDKDLNYCGTHQPCLNGGTCSNTGPDKYQCSCPE 160
Query: 1269 GTSGTNCEI 1277
G SG NCEI
Sbjct: 161 GYSGPNCEI 169
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%)
Query: 19 FWCSCPIGFSASLCEIPVANSCDSFPCMNGGTCTLKSLDRYTCTCAPGFTGSQCEL 74
+ C C + LC+ + PC+NGGTC+ D+Y C+C G++G CE+
Sbjct: 114 WQCLCETNWGGQLCDKDLNYCGTHQPCLNGGTCSNTGPDKYQCSCPEGYSGPNCEI 169
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 61/145 (42%), Gaps = 35/145 (24%)
Query: 329 ICVNGWTGPDCSLNIDDCAGAACFNGATCIDRVGSFY----CQCTPGKTGLLCHLEDACT 384
C+ GW GP+C+ I C G C + GS C+C G GL C D C
Sbjct: 53 TCMEGWMGPECNRAI-------CRQG--CSPKHGSCKLPGDCRCQYGWQGLYC---DKCI 100
Query: 385 SNPCHADAICDTNPIINGSYTCSCASGYKGVNCSEDINECEQGINCEINIDDCAFKPCRH 444
+P IC N + C C + + G C +D+N C +PC +
Sbjct: 101 PHPGCVHGIC------NEPWQCLCETNWGGQLCDKDLNYCG------------THQPCLN 142
Query: 445 GGTCIDL-VNAYKCVCQVPYTGHDC 468
GGTC + + Y+C C Y+G +C
Sbjct: 143 GGTCSNTGPDKYQCSCPEGYSGPNC 167
Score = 39.7 bits (91), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 42/93 (45%), Gaps = 10/93 (10%)
Query: 171 CNCTQGFTGPRCETNVNECESHPCQNDGSCLDDPGTFRCVCMCEPGYTGQNCESKYVPCD 230
C C G+ G C+ +C HP G C ++P C+CE + GQ C+ C
Sbjct: 85 CRCQYGWQGLYCD----KCIPHPGCVHGIC-NEPWQ----CLCETNWGGQLCDKDLNYCG 135
Query: 231 P-SPCQNGGVCRELDNLNYECECQSGYRGKNCE 262
PC NGG C Y+C C GY G NCE
Sbjct: 136 THQPCLNGGTCSNTGPDKYQCSCPEGYSGPNCE 168
Score = 38.5 bits (88), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 63/161 (39%), Gaps = 51/161 (31%)
Query: 932 CGVGWTGRYCNEDVDECQLSSPCRNGATCHNTNGSYL----CECAKGYEGRDCLINTDDC 987
C GW G CN + CR G C +GS C C G++G C D C
Sbjct: 54 CMEGWMGPECNRAI--------CRQG--CSPKHGSCKLPGDCRCQYGWQGLYC----DKC 99
Query: 988 ASFPCQNGGTCLDEVGDYSCLCVDGFSGKHCEVDIDECSSNPCHNGATCNQFQMIFIFFT 1047
P G C + + CLC + G+ C+ D++ C ++
Sbjct: 100 IPHPGCVHGICNEP---WQCLCETNWGGQLCDKDLNYCGTH------------------- 137
Query: 1048 NQYSWFLIAGSPCEHDGTCVNT-PGSFACNCTQGFTGPRCE 1087
PC + GTC NT P + C+C +G++GP CE
Sbjct: 138 ----------QPCLNGGTCSNTGPDKYQCSCPEGYSGPNCE 168
Score = 35.0 bits (79), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 40/84 (47%), Gaps = 8/84 (9%)
Query: 145 QYSWFLIAGSPCEHDGTCV----NTPGSFACNCTQGFTGPRCETNVNECESH-PCQNDGS 199
QY W + C CV N P + C C + G C+ ++N C +H PC N G+
Sbjct: 88 QYGWQGLYCDKCIPHPGCVHGICNEP--WQCLCETNWGGQLCDKDLNYCGTHQPCLNGGT 145
Query: 200 CLDDPGTFRCVCMCEPGYTGQNCE 223
C + G + C C GY+G NCE
Sbjct: 146 C-SNTGPDKYQCSCPEGYSGPNCE 168
Score = 34.3 bits (77), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 614 CICPDNYSGRNCEY-FGYDCDSNPCQNGGFCRSKEGGGYRCDCPPGATGTHCEL 666
C+C N+ G+ C+ Y PC NGG C + Y+C CP G +G +CE+
Sbjct: 116 CLCETNWGGQLCDKDLNYCGTHQPCLNGGTCSNTGPDKYQCSCPEGYSGPNCEI 169
Score = 32.3 bits (72), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 51/136 (37%), Gaps = 45/136 (33%)
Query: 49 GTCTLKSLDRYTCTCAPGFTGSQCELQDHCASSPCRNGAVCTSLEDTYECDCAPGFVGQT 108
G+C L C C G+ G C D C P G V + ++C C + GQ
Sbjct: 77 GSCKLPG----DCRCQYGWQGLYC---DKCIPHP---GCVHGICNEPWQCLCETNWGGQL 126
Query: 109 CSEDIIECVDDPCVHGECFNTHGSYTFQMIFIFFTNQYSWFLIAGSPCEHDGTCVNT-PG 167
C +D+ C TH PC + GTC NT P
Sbjct: 127 CDKDLNYC-----------GTH-----------------------QPCLNGGTCSNTGPD 152
Query: 168 SFACNCTQGFTGPRCE 183
+ C+C +G++GP CE
Sbjct: 153 KYQCSCPEGYSGPNCE 168
>pdb|1PFX|L Chain L, Porcine Factor Ixa
Length = 146
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 29/40 (72%)
Query: 1126 TDIDECASNPCLNGGICNDLINTFKCACPIGFTGSHCQIN 1165
D D+C NPCLNGG+C IN+++C C +GF G +C+++
Sbjct: 46 VDGDQCEPNPCLNGGLCKXDINSYECWCQVGFEGKNCELD 85
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 27/39 (69%)
Query: 1392 DIDECGSNPCQHGGICTDHLNGYTCECQIGYTGINCEIN 1430
D D+C NPC +GG+C +N Y C CQ+G+ G NCE++
Sbjct: 47 DGDQCEPNPCLNGGLCKXDINSYECWCQVGFEGKNCELD 85
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 26/39 (66%)
Query: 1354 DVDECASDPCLNGGTCEDGLNQFICHCKPGYGGKRCEFD 1392
D D+C +PCLNGG C+ +N + C C+ G+ GK CE D
Sbjct: 47 DGDQCEPNPCLNGGLCKXDINSYECWCQVGFEGKNCELD 85
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 26/34 (76%), Gaps = 1/34 (2%)
Query: 229 CDPSPCQNGGVCRELDNLNYECECQSGYRGKNCE 262
C+P+PC NGG+C+ D +YEC CQ G+ GKNCE
Sbjct: 51 CEPNPCLNGGLCKX-DINSYECWCQVGFEGKNCE 83
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 24/40 (60%)
Query: 982 INTDDCASFPCQNGGTCLDEVGDYSCLCVDGFSGKHCEVD 1021
++ D C PC NGG C ++ Y C C GF GK+CE+D
Sbjct: 46 VDGDQCEPNPCLNGGLCKXDINSYECWCQVGFEGKNCELD 85
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 1164 INIDDCVSSPCHNGGICKDSIAGYTCECLAGFTGMSCETNINDCASNPCHRGECIDGENS 1223
++ D C +PC NGG+CK I Y C C GF G +CE + N + C G +S
Sbjct: 46 VDGDQCEPNPCLNGGLCKXDINSYECWCQVGFEGKNCELDATCNIKNGRCKQFCKTGADS 105
Query: 1224 -FTCACHPGFTGA 1235
C+C G+ A
Sbjct: 106 KVLCSCTTGYRLA 118
Score = 39.7 bits (91), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 1242 DECASNPCQFGGQCEDLINGYQCRCKPGTSGTNCEIN 1278
D+C NPC GG C+ IN Y+C C+ G G NCE++
Sbjct: 49 DQCEPNPCLNGGLCKXDINSYECWCQVGFEGKNCELD 85
Score = 36.6 bits (83), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 862 QQPINIDDCAFKPCRHGGTCIDLVNAYKCVCQVPYTGHDCH 902
+Q ++ D C PC +GG C +N+Y+C CQV + G +C
Sbjct: 43 KQYVDGDQCEPNPCLNGGLCKXDINSYECWCQVGFEGKNCE 83
Score = 36.2 bits (82), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Query: 37 ANSCDSFPCMNGGTCTLKSLDRYTCTCAPGFTGSQCELQDHCASSPCRNGAVC-TSLEDT 95
+ C+ PC+NGG C ++ Y C C GF G CEL C R C T +
Sbjct: 48 GDQCEPNPCLNGGLCKX-DINSYECWCQVGFEGKNCELDATCNIKNGRCKQFCKTGADSK 106
Query: 96 YECDCAPGF 104
C C G+
Sbjct: 107 VLCSCTTGY 115
Score = 35.8 bits (81), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 1091 NECESHPCQNDGSCLDDPGTFRCVCMPGFTGTQCETD 1127
++CE +PC N G C D ++ C C GF G CE D
Sbjct: 49 DQCEPNPCLNGGLCKXDINSYECWCQVGFEGKNCELD 85
Score = 35.0 bits (79), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 76 DHCASSPCRNGAVCTSLEDTYECDCAPGFVGQTCSED 112
D C +PC NG +C ++YEC C GF G+ C D
Sbjct: 49 DQCEPNPCLNGGLCKXDINSYECWCQVGFEGKNCELD 85
Score = 35.0 bits (79), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 432 INIDDCAFKPCRHGGTCIDLVNAYKCVCQVPYTGHDCH 469
++ D C PC +GG C +N+Y+C CQV + G +C
Sbjct: 46 VDGDQCEPNPCLNGGLCKXDINSYECWCQVGFEGKNCE 83
Score = 34.7 bits (78), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 187 NECESHPCQNDGSCLDDPGTFRCVCMCEPGYTGQNCESKYVPCDPSPCQNGGVCRELDNL 246
++CE +PC N G C D ++ C C+ G+ G+NCE C+ + C+ +
Sbjct: 49 DQCEPNPCLNGGLCKXDINSYE--CWCQVGFEGKNCELD-ATCNIKNGRCKQFCKTGADS 105
Query: 247 NYECECQSGYR 257
C C +GYR
Sbjct: 106 KVLCSCTTGYR 116
Score = 34.7 bits (78), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 670 NECYSNPCQHAGTCEDRIADYACYCLPMWNGKNCDL 705
++C NPC + G C+ I Y C+C + GKNC+L
Sbjct: 49 DQCEPNPCLNGGLCKXDINSYECWCQVGFEGKNCEL 84
Score = 34.7 bits (78), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 629 GYDCDSNPCQNGGFCRSKEGGGYRCDCPPGATGTHCELDS 668
G C+ NPC NGG C+ + Y C C G G +CELD+
Sbjct: 48 GDQCEPNPCLNGGLCKX-DINSYECWCQVGFEGKNCELDA 86
Score = 33.9 bits (76), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 27/70 (38%), Gaps = 2/70 (2%)
Query: 344 DDCAGAACFNGATCIDRVGSFYCQCTPGKTGLLCHLEDACTSNPCHADAICDTNPIINGS 403
D C C NG C + S+ C C G G C L+ C C T +
Sbjct: 49 DQCEPNPCLNGGLCKXDINSYECWCQVGFEGKNCELDATCNIKNGRCKQFCKTG--ADSK 106
Query: 404 YTCSCASGYK 413
CSC +GY+
Sbjct: 107 VLCSCTTGYR 116
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 266 DDCPGNLCQNGATCMDGINKYSCLCLATYTGDLCEQDVDECSIRPSVCH 314
D C N C NG C IN Y C C + G CE D C+I+ C
Sbjct: 49 DQCEPNPCLNGGLCKXDINSYECWCQVGFEGKNCELDA-TCNIKNGRCK 96
Score = 32.0 bits (71), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 944 DVDECQLSSPCRNGATCHNTNGSYLCECAKGYEGRDCLINT 984
D D+C+ +PC NG C SY C C G+EG++C ++
Sbjct: 47 DGDQCE-PNPCLNGGLCKXDINSYECWCQVGFEGKNCELDA 86
Score = 31.6 bits (70), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 1318 NECASNPCANGGVCVDLIDGFKCECPRGYYDARCLSDV 1355
++C NPC NGG+C I+ ++C C G+ C D
Sbjct: 49 DQCEPNPCLNGGLCKXDINSYECWCQVGFEGKNCELDA 86
Score = 31.2 bits (69), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 35/91 (38%), Gaps = 11/91 (12%)
Query: 906 DPCVPNRCQHGARCTPSANFQDFACHCGVGWTGRYCNED----VDECQLSSPCRNGATCH 961
D C PN C +G C N + C C VG+ G+ C D + + C+ GA
Sbjct: 49 DQCEPNPCLNGGLCKXDIN--SYECWCQVGFEGKNCELDATCNIKNGRCKQFCKTGA--- 103
Query: 962 NTNGSYLCECAKGYEGRDCLINTDDCASFPC 992
+ LC C GY + FPC
Sbjct: 104 --DSKVLCSCTTGYRLAPDQKSCKPAVPFPC 132
>pdb|2W86|A Chain A, Crystal Structure Of Fibrillin-1 Domains Cbegf9hyb2cbegf10,
Calcium Saturated Form
Length = 147
Score = 47.4 bits (111), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 64/148 (43%), Gaps = 20/148 (13%)
Query: 1020 VDIDECSSNPCHNGATCNQFQMIFIFFTNQYSWFLIAGSPCEHDGTCVNTPGSFACNCTQ 1079
DIDEC S+PC NG C FI + S + C + C Q
Sbjct: 2 ADIDECESSPCINGV-CKNSPGSFICECSSESTLDPTKTICIE---------TIKGTCWQ 51
Query: 1080 GFTGPRCETNVN--ECESHPCQNDGSCLDDPGTF---RCVCMPGFT---GTQCETDIDEC 1131
RCE N+N +S C + G+ P T +C G++ GTQCE DIDEC
Sbjct: 52 TVIDGRCEININGATLKSQCCSSLGAAWGSPCTLCQVDPICGKGYSRIKGTQCE-DIDEC 110
Query: 1132 ASNPCL-NGGICNDLINTFKCACPIGFT 1158
P + G+C + +FKC CP G T
Sbjct: 111 EVFPGVCKNGLCVNTRGSFKCQCPSGMT 138
Score = 43.9 bits (102), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 65/167 (38%), Gaps = 47/167 (28%)
Query: 185 NVNECESHPCQNDGSCLDDPGTFRCVCMCEPGYTGQNCESKYVPCDPSPCQNGGVCRELD 244
+++ECES PC N G C + PG+F C C E DP+ +C E
Sbjct: 3 DIDECESSPCIN-GVCKNSPGSFICECSSESTL------------DPTK----TICIE-- 43
Query: 245 NLNYECECQSGYRGKNCEENIDDC----------------PGNLCQNGATCMDGINKYSC 288
+ C CE NI+ P LCQ C G ++
Sbjct: 44 --TIKGTCWQTVIDGRCEININGATLKSQCCSSLGAAWGSPCTLCQVDPICGKGYSRIK- 100
Query: 289 LCLATYTGDLCEQDVDECSIRPSVCHNGATCTNSVGGFSCICVNGWT 335
G CE D+DEC + P VC NG C N+ G F C C +G T
Sbjct: 101 -------GTQCE-DIDECEVFPGVCKNGL-CVNTRGSFKCQCPSGMT 138
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 66/152 (43%), Gaps = 25/152 (16%)
Query: 1203 NINDCASNPCHRGECIDGENSFTCACHPGFTGALCNTQLDECASNPCQ---FGGQCEDLI 1259
+I++C S+PC G C + SF C C T T E C G+CE I
Sbjct: 3 DIDECESSPCINGVCKNSPGSFICECSSESTLDPTKTICIETIKGTCWQTVIDGRCEINI 62
Query: 1260 NGYQCRCKPGTSGTNCEININECYSNPCRNGAKCVDGINRYSCECLPGYT---GLHCETN 1316
NG T + C ++ + +PC VD I C GY+ G CE +
Sbjct: 63 NG-------ATLKSQCCSSLGAAWGSPCTLCQ--VDPI------CGKGYSRIKGTQCE-D 106
Query: 1317 INECASNP--CANGGVCVDLIDGFKCECPRGY 1346
I+EC P C NG +CV+ FKC+CP G
Sbjct: 107 IDECEVFPGVCKNG-LCVNTRGSFKCQCPSGM 137
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 69/162 (42%), Gaps = 45/162 (27%)
Query: 942 NEDVDECQLSSPCRNGATCHNTNGSYLCECAKGYEGRDCLINTDDCASFPCQN--GGTCL 999
+ D+DEC+ SSPC NG C N+ GS++CEC+ +T D C GTC
Sbjct: 1 SADIDECE-SSPCINGV-CKNSPGSFICECSSE--------STLDPTKTICIETIKGTCW 50
Query: 1000 DEVGDYSCLCVDGFSGKHCEVDIDE-------CSSNPCHNGATCNQFQMIFIFFTNQYSW 1052
V +DG CE++I+ CSS G+ C Q+ I +
Sbjct: 51 QTV-------IDG----RCEININGATLKSQCCSSLGAAWGSPCTLCQVDPIC---GKGY 96
Query: 1053 FLIAGSPCE------------HDGTCVNTPGSFACNCTQGFT 1082
I G+ CE +G CVNT GSF C C G T
Sbjct: 97 SRIKGTQCEDIDECEVFPGVCKNGLCVNTRGSFKCQCPSGMT 138
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 56/138 (40%), Gaps = 33/138 (23%)
Query: 1127 DIDECASNPCLNGGICNDLINTFKCACPIGFTGSHCQINIDDCVSSPCHNG---GICKDS 1183
DIDEC S+PC+N G+C + +F C C T + + + C G C+ +
Sbjct: 3 DIDECESSPCIN-GVCKNSPGSFICECSSESTLDPTKTICIETIKGTCWQTVIDGRCEIN 61
Query: 1184 IAGYTCE-----------------------CLAGFT---GMSCETNINDCASNP--CHRG 1215
I G T + C G++ G CE +I++C P C G
Sbjct: 62 INGATLKSQCCSSLGAAWGSPCTLCQVDPICGKGYSRIKGTQCE-DIDECEVFPGVCKNG 120
Query: 1216 ECIDGENSFTCACHPGFT 1233
C++ SF C C G T
Sbjct: 121 LCVNTRGSFKCQCPSGMT 138
Score = 32.3 bits (72), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 57/135 (42%), Gaps = 35/135 (25%)
Query: 110 SEDIIECVDDPCVHGECFNTHGSYT-----------FQMIFIFFTNQYSWFLIAGSPCE- 157
S DI EC PC++G C N+ GS+ + I I W + CE
Sbjct: 1 SADIDECESSPCINGVCKNSPGSFICECSSESTLDPTKTICIETIKGTCWQTVIDGRCEI 60
Query: 158 -------HDGTCVNTPGSFACNCT---------QGFT---GPRCETNVNECESHP--CQN 196
C + ++ CT +G++ G +CE +++ECE P C+N
Sbjct: 61 NINGATLKSQCCSSLGAAWGSPCTLCQVDPICGKGYSRIKGTQCE-DIDECEVFPGVCKN 119
Query: 197 DGSCLDDPGTFRCVC 211
G C++ G+F+C C
Sbjct: 120 -GLCVNTRGSFKCQC 133
Score = 32.0 bits (71), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 68/158 (43%), Gaps = 34/158 (21%)
Query: 1278 NINECYSNPCRNGAKCVDGINRYSCECLPGYTGLHCETNINECASNPCANGGVCVDLIDG 1337
+I+EC S+PC NG C + + CEC +E +P +C++ I G
Sbjct: 3 DIDECESSPCINGV-CKNSPGSFICECS------------SESTLDPTKT--ICIETIKG 47
Query: 1338 FKCECPRGYYDARCLSDVDE-------CASDPCLNGGTCEDGLNQFICHCKPGYG---GK 1387
C + D RC +++ C+S G C L Q C GY G
Sbjct: 48 ---TCWQTVIDGRCEININGATLKSQCCSSLGAAWGSPCT--LCQVDPICGKGYSRIKGT 102
Query: 1388 RCEFDIDECGSNP--CQHGGICTDHLNGYTCECQIGYT 1423
+CE DIDEC P C++G +C + + C+C G T
Sbjct: 103 QCE-DIDECEVFPGVCKNG-LCVNTRGSFKCQCPSGMT 138
Score = 32.0 bits (71), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 10/58 (17%)
Query: 932 CGVGWT---GRYCNEDVDECQL-SSPCRNGATCHNTNGSYLCECAKGY----EGRDCL 981
CG G++ G C ED+DEC++ C+NG C NT GS+ C+C G GR CL
Sbjct: 92 CGKGYSRIKGTQC-EDIDECEVFPGVCKNGL-CVNTRGSFKCQCPSGMTLDATGRICL 147
Score = 31.6 bits (70), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 1353 SDVDECASDPCLNGGTCEDGLNQFICHC 1380
+D+DEC S PC+N G C++ FIC C
Sbjct: 2 ADIDECESSPCIN-GVCKNSPGSFICEC 28
>pdb|1FAX|L Chain L, Coagulation Factor Xa Inhibitor Complex
Length = 96
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 27/36 (75%)
Query: 985 DDCASFPCQNGGTCLDEVGDYSCLCVDGFSGKHCEV 1020
D C + PCQN G C D +G+Y+C C++GF GK+CE+
Sbjct: 5 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCEL 40
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 1167 DDCVSSPCHNGGICKDSIAGYTCECLAGFTGMSCETNINDCAS---NPCHRGECIDGENS 1223
D C +SPC N G CKD + YTC CL GF G +CE S C + C + + S
Sbjct: 5 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQF-CHEEQAS 63
Query: 1224 FTCACHPGFTGA 1235
C+C G+T A
Sbjct: 64 VVCSCARGYTLA 75
Score = 43.9 bits (102), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 1353 SDVDECASDPCLNGGTCEDGLNQFICHCKPGYGGKRCE-FDIDECGSNPCQHGGICTDHL 1411
D D+C + PC N G C+DGL ++ C C G+ GK CE F C + C +
Sbjct: 2 KDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQ 61
Query: 1412 NGYTCECQIGYT 1423
C C GYT
Sbjct: 62 ASVVCSCARGYT 73
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 7/72 (9%)
Query: 1091 NECESHPCQNDGSCLDDPGTFRCVCMPGFTGTQCETDIDECASNPCLNGGICNDLIN--- 1147
++CE+ PCQN G C D G + C C+ GF G CE + S L+ G C+ +
Sbjct: 5 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCS---LDNGDCDQFCHEEQ 61
Query: 1148 -TFKCACPIGFT 1158
+ C+C G+T
Sbjct: 62 ASVVCSCARGYT 73
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 27/37 (72%)
Query: 670 NECYSNPCQHAGTCEDRIADYACYCLPMWNGKNCDLY 706
++C ++PCQ+ G C+D + +Y C CL + GKNC+L+
Sbjct: 5 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELF 41
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 1280 NECYSNPCRNGAKCVDGINRYSCECLPGYTGLHCETNINE-CASNPCANGGVCVDLIDGF 1338
++C ++PC+N KC DG+ Y+C CL G+ G +CE + C+ + C +
Sbjct: 5 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQASV 64
Query: 1339 KCECPRGY 1346
C C RGY
Sbjct: 65 VCSCARGY 72
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 25/38 (65%)
Query: 1392 DIDECGSNPCQHGGICTDHLNGYTCECQIGYTGINCEI 1429
D D+C ++PCQ+ G C D L YTC C G+ G NCE+
Sbjct: 3 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCEL 40
Score = 38.9 bits (89), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 1127 DIDECASNPCLNGGICNDLINTFKCACPIGFTGSHCQINIDDCVSSPCHNGG---ICKDS 1183
D D+C ++PC N G C D + + C C GF G +C++ S NG C +
Sbjct: 3 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSL--DNGDCDQFCHEE 60
Query: 1184 IAGYTCECLAGFT 1196
A C C G+T
Sbjct: 61 QASVVCSCARGYT 73
Score = 37.7 bits (86), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Query: 154 SPCEHDGTCVNTPGSFACNCTQGFTGPRCETNVNE-CESHPCQNDGSCLDDPGTFRCVCM 212
SPC++ G C + G + C C +GF G CE + C D C ++ + VC
Sbjct: 10 SPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQASV--VCS 67
Query: 213 CEPGYTGQNCESKYVPCDPSPC 234
C GYT + +P P PC
Sbjct: 68 CARGYTLADNGKACIPTGPYPC 89
Score = 37.7 bits (86), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Query: 943 EDVDECQLSSPCRNGATCHNTNGSYLCECAKGYEGRDCLINTDDCASFPCQNGG---TCL 999
+D D+C+ +SPC+N C + G Y C C +G+EG++C + T S NG C
Sbjct: 2 KDGDQCE-TSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSL--DNGDCDQFCH 58
Query: 1000 DEVGDYSCLCVDGFS 1014
+E C C G++
Sbjct: 59 EEQASVVCSCARGYT 73
Score = 37.7 bits (86), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Query: 187 NECESHPCQNDGSCLDDPGTFRCVCMCEPGYTGQNCE 223
++CE+ PCQN G C D G + C C+ G+ G+NCE
Sbjct: 5 DQCETSPCQNQGKCKDGLGEYTCTCL--EGFEGKNCE 39
Score = 36.2 bits (82), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 1242 DECASNPCQFGGQCEDLINGYQCRCKPGTSGTNCEI 1277
D+C ++PCQ G+C+D + Y C C G G NCE+
Sbjct: 5 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCEL 40
Score = 36.2 bits (82), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 37 ANSCDSFPCMNGGTCTLKSLDRYTCTCAPGFTGSQCEL--QDHCASSPCRNGAVCTSLED 94
+ C++ PC N G C L YTCTC GF G CEL + C+ C +
Sbjct: 4 GDQCETSPCQNQGKCK-DGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQA 62
Query: 95 TYECDCAPGFV 105
+ C CA G+
Sbjct: 63 SVVCSCARGYT 73
Score = 35.8 bits (81), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
Query: 266 DDCPGNLCQNGATCMDGINKYSCLCLATYTGDLCEQDVDE-CSIRPSVCHNGATCTNSVG 324
D C + CQN C DG+ +Y+C CL + G CE + CS+ C C
Sbjct: 5 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQ--FCHEEQA 62
Query: 325 GFSCICVNGWTGPD 338
C C G+T D
Sbjct: 63 SVVCSCARGYTLAD 76
Score = 35.0 bits (79), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 1058 SPCEHDGTCVNTPGSFACNCTQGFTGPRCETNVNE-CESHPCQNDGSCLDDPGTFRCVCM 1116
SPC++ G C + G + C C +GF G CE + C D C ++ + C C
Sbjct: 10 SPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQASVVCSCA 69
Query: 1117 PGFT 1120
G+T
Sbjct: 70 RGYT 73
Score = 34.7 bits (78), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query: 629 GYDCDSNPCQNGGFCRSKEGGGYRCDCPPGATGTHCELDSRNECYSNPCQHAGTCEDRIA 688
G C+++PCQN G C+ G Y C C G G +CEL +R C + C + A
Sbjct: 4 GDQCETSPCQNQGKCKDGLGE-YTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQA 62
Query: 689 DYACYCLPMW----NGKNC 703
C C + NGK C
Sbjct: 63 SVVCSCARGYTLADNGKAC 81
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Query: 229 CDPSPCQNGGVCRELDNL-NYECECQSGYRGKNCE 262
C+ SPCQN G C+ D L Y C C G+ GKNCE
Sbjct: 7 CETSPCQNQGKCK--DGLGEYTCTCLEGFEGKNCE 39
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 301 QDVDECSIRPSVCHNGATCTNSVGGFSCICVNGWTGPDCSL 341
+D D+C P C N C + +G ++C C+ G+ G +C L
Sbjct: 2 KDGDQCETSP--CQNQGKCKDGLGEYTCTCLEGFEGKNCEL 40
Score = 30.8 bits (68), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 28/71 (39%), Gaps = 5/71 (7%)
Query: 344 DDCAGAACFNGATCIDRVGSFYCQCTPGKTGLLCHL--EDACTSNPCHADAICDTNPIIN 401
D C + C N C D +G + C C G G C L C+ + D C
Sbjct: 5 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEE---Q 61
Query: 402 GSYTCSCASGY 412
S CSCA GY
Sbjct: 62 ASVVCSCARGY 72
>pdb|1XKA|L Chain L, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1XKB|A Chain A, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1XKB|B Chain B, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1WU1|B Chain B, Factor Xa In Complex With The Inhibitor
4-[(5-Chloroindol-2-Yl)
Sulfonyl]-2-(2-Methylpropyl)-1-[[5-(Pyridin-4-Yl)
Pyrimidin-2- Yl]carbonyl]piperazine
Length = 95
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 1167 DDCVSSPCHNGGICKDSIAGYTCECLAGFTGMSCETNINDCAS---NPCHRGECIDGENS 1223
D C +SPC N G CK + YTC CL GF G +CE S C + C + +NS
Sbjct: 4 DQCETSPCQNQGKCKXGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQF-CHEEQNS 62
Query: 1224 FTCACHPGFTGA 1235
C+C G+T A
Sbjct: 63 VVCSCARGYTLA 74
Score = 43.9 bits (102), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 1353 SDVDECASDPCLNGGTCEDGLNQFICHCKPGYGGKRCE-FDIDECGSNPCQHGGICTDHL 1411
D D+C + PC N G C+ GL ++ C C G+ GK CE F C + C +
Sbjct: 1 KDGDQCETSPCQNQGKCKXGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQ 60
Query: 1412 NGYTCECQIGYT 1423
N C C GYT
Sbjct: 61 NSVVCSCARGYT 72
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 26/36 (72%)
Query: 985 DDCASFPCQNGGTCLDEVGDYSCLCVDGFSGKHCEV 1020
D C + PCQN G C +G+Y+C C++GF GK+CE+
Sbjct: 4 DQCETSPCQNQGKCKXGLGEYTCTCLEGFEGKNCEL 39
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 7/72 (9%)
Query: 1091 NECESHPCQNDGSCLDDPGTFRCVCMPGFTGTQCETDIDECASNPCLNGG----ICNDLI 1146
++CE+ PCQN G C G + C C+ GF G CE + S L+ G C++
Sbjct: 4 DQCETSPCQNQGKCKXGLGEYTCTCLEGFEGKNCELFTRKLCS---LDNGDCDQFCHEEQ 60
Query: 1147 NTFKCACPIGFT 1158
N+ C+C G+T
Sbjct: 61 NSVVCSCARGYT 72
Score = 40.0 bits (92), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 26/37 (70%)
Query: 670 NECYSNPCQHAGTCEDRIADYACYCLPMWNGKNCDLY 706
++C ++PCQ+ G C+ + +Y C CL + GKNC+L+
Sbjct: 4 DQCETSPCQNQGKCKXGLGEYTCTCLEGFEGKNCELF 40
Score = 40.0 bits (92), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 1280 NECYSNPCRNGAKCVDGINRYSCECLPGYTGLHCETNINE-CASNPCANGGVCVDLIDGF 1338
++C ++PC+N KC G+ Y+C CL G+ G +CE + C+ + C + +
Sbjct: 4 DQCETSPCQNQGKCKXGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSV 63
Query: 1339 KCECPRGYYDA 1349
C C RGY A
Sbjct: 64 VCSCARGYTLA 74
Score = 38.1 bits (87), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 24/38 (63%)
Query: 1392 DIDECGSNPCQHGGICTDHLNGYTCECQIGYTGINCEI 1429
D D+C ++PCQ+ G C L YTC C G+ G NCE+
Sbjct: 2 DGDQCETSPCQNQGKCKXGLGEYTCTCLEGFEGKNCEL 39
Score = 37.0 bits (84), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 37 ANSCDSFPCMNGGTCTLKSLDRYTCTCAPGFTGSQCEL--QDHCASSPCRNGAVCTSLED 94
+ C++ PC N G C L YTCTC GF G CEL + C+ C ++
Sbjct: 3 GDQCETSPCQNQGKCK-XGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQN 61
Query: 95 TYECDCAPGFV 105
+ C CA G+
Sbjct: 62 SVVCSCARGYT 72
Score = 36.6 bits (83), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Query: 943 EDVDECQLSSPCRNGATCHNTNGSYLCECAKGYEGRDCLINTDDCASFPCQNGG---TCL 999
+D D+C+ +SPC+N C G Y C C +G+EG++C + T S NG C
Sbjct: 1 KDGDQCE-TSPCQNQGKCKXGLGEYTCTCLEGFEGKNCELFTRKLCSL--DNGDCDQFCH 57
Query: 1000 DEVGDYSCLCVDGFS 1014
+E C C G++
Sbjct: 58 EEQNSVVCSCARGYT 72
Score = 36.6 bits (83), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Query: 154 SPCEHDGTCVNTPGSFACNCTQGFTGPRCETNVNE-CESHPCQNDGSCLDDPGTFRCVCM 212
SPC++ G C G + C C +GF G CE + C D C ++ + VC
Sbjct: 9 SPCQNQGKCKXGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSV--VCS 66
Query: 213 CEPGYTGQNCESKYVPCDPSPC 234
C GYT + +P P PC
Sbjct: 67 CARGYTLADNGKACIPTGPYPC 88
Score = 35.0 bits (79), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 187 NECESHPCQNDGSCLDDPGTFRCVCMCEPGYTGQNCE 223
++CE+ PCQN G C G + C C+ G+ G+NCE
Sbjct: 4 DQCETSPCQNQGKCKXGLGEYTCTCL--EGFEGKNCE 38
Score = 34.7 bits (78), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 1242 DECASNPCQFGGQCEDLINGYQCRCKPGTSGTNCEININE-CYSNPCRNGAKCVDGINRY 1300
D+C ++PCQ G+C+ + Y C C G G NCE+ + C + C + N
Sbjct: 4 DQCETSPCQNQGKCKXGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSV 63
Query: 1301 SCECLPGYT 1309
C C GYT
Sbjct: 64 VCSCARGYT 72
Score = 34.3 bits (77), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Query: 1127 DIDECASNPCLNGGICNDLINTFKCACPIGFTGSHCQINIDDCVSSPCHNGG---ICKDS 1183
D D+C ++PC N G C + + C C GF G +C++ S NG C +
Sbjct: 2 DGDQCETSPCQNQGKCKXGLGEYTCTCLEGFEGKNCELFTRKLCSL--DNGDCDQFCHEE 59
Query: 1184 IAGYTCECLAGFT 1196
C C G+T
Sbjct: 60 QNSVVCSCARGYT 72
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 1058 SPCEHDGTCVNTPGSFACNCTQGFTGPRCETNVNE-CESHPCQNDGSCLDDPGTFRCVCM 1116
SPC++ G C G + C C +GF G CE + C D C ++ + C C
Sbjct: 9 SPCQNQGKCKXGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCA 68
Query: 1117 PGFT 1120
G+T
Sbjct: 69 RGYT 72
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
Query: 266 DDCPGNLCQNGATCMDGINKYSCLCLATYTGDLCEQDVDE-CSIRPSVCHNGATCTNSVG 324
D C + CQN C G+ +Y+C CL + G CE + CS+ C C
Sbjct: 4 DQCETSPCQNQGKCKXGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQ--FCHEEQN 61
Query: 325 GFSCICVNGWTGPD 338
C C G+T D
Sbjct: 62 SVVCSCARGYTLAD 75
Score = 32.7 bits (73), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 629 GYDCDSNPCQNGGFCRSKEGGGYRCDCPPGATGTHCELDSRNEC 672
G C+++PCQN G C+ G Y C C G G +CEL +R C
Sbjct: 3 GDQCETSPCQNQGKCKXGLGE-YTCTCLEGFEGKNCELFTRKLC 45
Score = 32.3 bits (72), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 301 QDVDECSIRPSVCHNGATCTNSVGGFSCICVNGWTGPDCSL 341
+D D+C P C N C +G ++C C+ G+ G +C L
Sbjct: 1 KDGDQCETSP--CQNQGKCKXGLGEYTCTCLEGFEGKNCEL 39
Score = 32.0 bits (71), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 229 CDPSPCQNGGVCRELDNLNYECECQSGYRGKNCE 262
C+ SPCQN G C+ Y C C G+ GKNCE
Sbjct: 6 CETSPCQNQGKCKXGLG-EYTCTCLEGFEGKNCE 38
Score = 30.4 bits (67), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 76 DHCASSPCRNGAVCTSLEDTYECDCAPGFVGQTCS 110
D C +SPC+N C Y C C GF G+ C
Sbjct: 4 DQCETSPCQNQGKCKXGLGEYTCTCLEGFEGKNCE 38
>pdb|1APO|A Chain A, Three-Dimensional Structure Of The Apo Form Of The N-
Terminal Egf-Like Module Of Blood Coagulation Factor X As
Determined By Nmr Spectroscopy And Simulated Folding
Length = 42
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 23/36 (63%)
Query: 985 DDCASFPCQNGGTCLDEVGDYSCLCVDGFSGKHCEV 1020
D C PC N G C D +GDY+C C +GF GK+CE
Sbjct: 4 DQCEGHPCLNQGHCKDGIGDYTCTCAEGFEGKNCEF 39
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 24/39 (61%)
Query: 1353 SDVDECASDPCLNGGTCEDGLNQFICHCKPGYGGKRCEF 1391
D D+C PCLN G C+DG+ + C C G+ GK CEF
Sbjct: 1 KDGDQCEGHPCLNQGHCKDGIGDYTCTCAEGFEGKNCEF 39
Score = 39.3 bits (90), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 20/35 (57%)
Query: 1167 DDCVSSPCHNGGICKDSIAGYTCECLAGFTGMSCE 1201
D C PC N G CKD I YTC C GF G +CE
Sbjct: 4 DQCEGHPCLNQGHCKDGIGDYTCTCAEGFEGKNCE 38
Score = 39.3 bits (90), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 20/35 (57%)
Query: 1091 NECESHPCQNDGSCLDDPGTFRCVCMPGFTGTQCE 1125
++CE HPC N G C D G + C C GF G CE
Sbjct: 4 DQCEGHPCLNQGHCKDGIGDYTCTCAEGFEGKNCE 38
Score = 38.9 bits (89), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 1127 DIDECASNPCLNGGICNDLINTFKCACPIGFTGSHCQINI 1166
D D+C +PCLN G C D I + C C GF G +C+ +
Sbjct: 2 DGDQCEGHPCLNQGHCKDGIGDYTCTCAEGFEGKNCEFST 41
Score = 36.6 bits (83), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 670 NECYSNPCQHAGTCEDRIADYACYCLPMWNGKNCDL 705
++C +PC + G C+D I DY C C + GKNC+
Sbjct: 4 DQCEGHPCLNQGHCKDGIGDYTCTCAEGFEGKNCEF 39
Score = 35.8 bits (81), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 37 ANSCDSFPCMNGGTCTLKSLDRYTCTCAPGFTGSQCEL 74
+ C+ PC+N G C + YTCTCA GF G CE
Sbjct: 3 GDQCEGHPCLNQGHCK-DGIGDYTCTCAEGFEGKNCEF 39
Score = 35.8 bits (81), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 187 NECESHPCQNDGSCLDDPGTFRCVCMCEPGYTGQNCE 223
++CE HPC N G C D G + C C G+ G+NCE
Sbjct: 4 DQCEGHPCLNQGHCKDGIGDYTCTCA--EGFEGKNCE 38
Score = 35.4 bits (80), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 1392 DIDECGSNPCQHGGICTDHLNGYTCECQIGYTGINCEINI 1431
D D+C +PC + G C D + YTC C G+ G NCE +
Sbjct: 2 DGDQCEGHPCLNQGHCKDGIGDYTCTCAEGFEGKNCEFST 41
Score = 35.4 bits (80), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 1280 NECYSNPCRNGAKCVDGINRYSCECLPGYTGLHCE 1314
++C +PC N C DGI Y+C C G+ G +CE
Sbjct: 4 DQCEGHPCLNQGHCKDGIGDYTCTCAEGFEGKNCE 38
Score = 35.0 bits (79), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 943 EDVDECQLSSPCRNGATCHNTNGSYLCECAKGYEGRDCLINT 984
+D D+C+ PC N C + G Y C CA+G+EG++C +T
Sbjct: 1 KDGDQCE-GHPCLNQGHCKDGIGDYTCTCAEGFEGKNCEFST 41
Score = 33.9 bits (76), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 20/38 (52%)
Query: 1242 DECASNPCQFGGQCEDLINGYQCRCKPGTSGTNCEINI 1279
D+C +PC G C+D I Y C C G G NCE +
Sbjct: 4 DQCEGHPCLNQGHCKDGIGDYTCTCAEGFEGKNCEFST 41
Score = 31.6 bits (70), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 18/35 (51%)
Query: 266 DDCPGNLCQNGATCMDGINKYSCLCLATYTGDLCE 300
D C G+ C N C DGI Y+C C + G CE
Sbjct: 4 DQCEGHPCLNQGHCKDGIGDYTCTCAEGFEGKNCE 38
>pdb|3QH0|A Chain A, X-Ray Crystal Structure Of Palmitic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3QH0|B Chain B, X-Ray Crystal Structure Of Palmitic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3QMO|A Chain A, X-Ray Crystal Structure Of Ns-398 Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3QMO|B Chain B, X-Ray Crystal Structure Of Ns-398 Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|4E1G|A Chain A, X-Ray Crystal Structure Of Alpha-Linolenic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|4E1G|B Chain B, X-Ray Crystal Structure Of Alpha-Linolenic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
Length = 610
Score = 42.4 bits (98), Expect = 0.003, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 207 FRCVCMCEPGYTGQ--NCESKYVPCDPSPCQNGGVCRELDNLNYECEC-QSGYRGKNC 261
FR V +C Q N + PC +PCQN G C Y+C+C ++G+ G+NC
Sbjct: 3 FRAVLLCAALGLSQAANHHHHHHPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 60
Score = 38.5 bits (88), Expect = 0.038, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 1320 CASNPCANGGVCVDL-IDGFKCECPR-GYYDARCLS 1353
C SNPC N G C+ D +KC+C R G+Y C +
Sbjct: 27 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTT 62
Score = 37.7 bits (86), Expect = 0.061, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 78 CASSPCRNGAVCTSLE-DTYECDCA-PGFVGQTCS 110
C S+PC+N C S D Y+CDC GF G+ C+
Sbjct: 27 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCT 61
Score = 37.4 bits (85), Expect = 0.089, Method: Composition-based stats.
Identities = 17/34 (50%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 632 CDSNPCQNGGFCRSKEGGGYRCDCP-PGATGTHC 664
C SNPCQN G C S Y+CDC G G +C
Sbjct: 27 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 60
Score = 37.0 bits (84), Expect = 0.12, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 1282 CYSNPCRNGAKCVD-GINRYSCECL-PGYTGLHCET 1315
C SNPC+N +C+ G ++Y C+C G+ G +C T
Sbjct: 27 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTT 62
Score = 36.2 bits (82), Expect = 0.16, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 25 IGFSASLCEIPVANSCDSFPCMNGGTCTLKSLDRYTCTCA-PGFTGSQC 72
+G S + + C S PC N G C D+Y C C GF G C
Sbjct: 12 LGLSQAANHHHHHHPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 60
Score = 34.3 bits (77), Expect = 0.72, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 1396 CGSNPCQHGGIC-TDHLNGYTCEC-QIGYTGINC 1427
C SNPCQ+ G C + + Y C+C + G+ G NC
Sbjct: 27 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 60
Score = 34.3 bits (77), Expect = 0.78, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 1358 CASDPCLNGGTC-EDGLNQFICHC-KPGYGGKRC 1389
C S+PC N G C G +Q+ C C + G+ G+ C
Sbjct: 27 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 60
Score = 33.9 bits (76), Expect = 0.81, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Query: 524 CLSNPCSSHGTLDCVQL-VNNYHCNC-RPGYMGRHCEVKDLAVKVTSMNASPTLAPLTVL 581
C SNPC + G +C+ + Y C+C R G+ G +C + ++ + PT P TV
Sbjct: 27 CCSNPCQNRG--ECMSTGFDQYKCDCTRTGFYGENCTTPEFLTRIKLL-LKPT--PNTVH 81
Query: 582 WI 583
+I
Sbjct: 82 YI 83
Score = 33.9 bits (76), Expect = 0.98, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 987 CASFPCQNGGTCLDEVGD-YSCLCV-DGFSGKHC 1018
C S PCQN G C+ D Y C C GF G++C
Sbjct: 27 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 60
Score = 33.9 bits (76), Expect = 1.0, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 189 CESHPCQNDGSCLDDP-GTFRCVCMCEPGYTGQNCES 224
C S+PCQN G C+ ++C C G+ G+NC +
Sbjct: 27 CCSNPCQNRGECMSTGFDQYKCDCT-RTGFYGENCTT 62
Score = 33.5 bits (75), Expect = 1.3, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 1244 CASNPCQFGGQCEDL-INGYQCRC-KPGTSGTNC 1275
C SNPCQ G+C + Y+C C + G G NC
Sbjct: 27 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 60
Score = 32.7 bits (73), Expect = 1.8, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 1093 CESHPCQNDGSCLDDP-GTFRCVCM-PGFTGTQCET 1126
C S+PCQN G C+ ++C C GF G C T
Sbjct: 27 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTT 62
Score = 32.7 bits (73), Expect = 2.2, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 1169 CVSSPCHNGGICKDS-IAGYTCECL-AGFTGMSCET 1202
C S+PC N G C + Y C+C GF G +C T
Sbjct: 27 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTT 62
Score = 32.3 bits (72), Expect = 2.5, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 1131 CASNPCLNGGICNDL-INTFKCACP-IGFTGSHC 1162
C SNPC N G C + +KC C GF G +C
Sbjct: 27 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 60
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 41.6 bits (96), Expect = 0.004, Method: Composition-based stats.
Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 15/103 (14%)
Query: 1830 LINADADINVPDNSGKTALHWXXXXXXXXXXXXLLSHGVN---------------PREGS 1874
LI+ AD+N D+ G+T LH+ L+S G + +EG
Sbjct: 56 LISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGH 115
Query: 1875 YGACKALLDNFANREITDHMDRLPRDVASERLHHDIVRLLDEH 1917
K L+ A+ +D R P D+A E + +IV+LL++
Sbjct: 116 KEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQ 158
Score = 36.6 bits (83), Expect = 0.13, Method: Composition-based stats.
Identities = 27/100 (27%), Positives = 40/100 (40%), Gaps = 15/100 (15%)
Query: 1830 LINADADINVPDNSGKTALHWXXXXXXXXXXXXLLSHGVN---------------PREGS 1874
LI AD+N D+ G+T LH+ L+S G + +EG
Sbjct: 23 LIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGH 82
Query: 1875 YGACKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL 1914
K L+ A+ D R P A++ H +IV+LL
Sbjct: 83 KEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLL 122
>pdb|3R05|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), With
Splice Insert Ss3
pdb|3R05|B Chain B, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), With
Splice Insert Ss3
Length = 1254
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 1253 GQCEDLINGYQCRCKPGTSGTNCEININECYSNPCRNGAKCVDGINRYSCECL-PGYTGL 1311
GQ +D+ + + G + C SNPC+N C DG NRY C+C GY G
Sbjct: 593 GQSKDIRQMAEVQSTAGVKPSCSRETAKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYLGR 652
Query: 1312 HCE 1314
CE
Sbjct: 653 SCE 655
Score = 37.7 bits (86), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 1358 CASDPCLNGGTCEDGLNQFICHCK-PGYGGKRCE 1390
C S+PC N G C DG N+++C C GY G+ CE
Sbjct: 622 CLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCE 655
Score = 35.0 bits (79), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 1396 CGSNPCQHGGICTDHLNGYTCECQ-IGYTGINCE 1428
C SNPC++ G+C D N Y C+C GY G +CE
Sbjct: 622 CLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCE 655
Score = 34.3 bits (77), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 1169 CVSSPCHNGGICKDSIAGYTCECL-AGFTGMSCE 1201
C+S+PC N G+C+D Y C+C G+ G SCE
Sbjct: 622 CLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCE 655
Score = 33.9 bits (76), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 43/133 (32%), Gaps = 11/133 (8%)
Query: 249 ECECQSGYRGKNCEENIDDCPGNLCQNGATCMDGINKYSCLCLAT-YTGDLCEQDVDECS 307
E + +G + E C N C+N C DG N+Y C C T Y G CE++ S
Sbjct: 603 EVQSTAGVKPSCSRETAKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCEREATVLS 662
Query: 308 IRPSVCHNGATCTNSVGGFSCICVNGWTGPDCSLNIDDCAGAACFNGATCIDRVGSFYCQ 367
S+ V D SL T D + +
Sbjct: 663 YDGSMFMK----------IQLPVVMHTEAEDVSLRFRSQRAYGILMATTSRDSADTLRLE 712
Query: 368 CTPGKTGLLCHLE 380
G+ L +L+
Sbjct: 713 LDAGRVKLTVNLD 725
Score = 32.7 bits (73), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Query: 228 PCDPSPCQNGGVCRELDNLNYECECQ-SGYRGKNCEE 263
PC +PC+N G+CR+ N Y C+C +GY G++CE
Sbjct: 621 PCLSNPCKNNGMCRDGWN-RYVCDCSGTGYLGRSCER 656
Score = 31.2 bits (69), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 524 CLSNPCSSHGTLDCVQLVNNYHCNCR-PGYMGRHCE 558
CLSNPC ++G C N Y C+C GY+GR CE
Sbjct: 622 CLSNPCKNNGM--CRDGWNRYVCDCSGTGYLGRSCE 655
>pdb|1WHE|A Chain A, Coagulation Factor, Nmr, 20 Structures
pdb|1WHF|A Chain A, Coagulation Factor, Nmr, 15 Structures
Length = 86
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 23/39 (58%)
Query: 1353 SDVDECASDPCLNGGTCEDGLNQFICHCKPGYGGKRCEF 1391
D D+C PCLN G C+ G+ + C C G+ GK CEF
Sbjct: 45 KDGDQCEGHPCLNQGHCKXGIGDYTCTCAEGFEGKNCEF 83
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 22/36 (61%)
Query: 985 DDCASFPCQNGGTCLDEVGDYSCLCVDGFSGKHCEV 1020
D C PC N G C +GDY+C C +GF GK+CE
Sbjct: 48 DQCEGHPCLNQGHCKXGIGDYTCTCAEGFEGKNCEF 83
Score = 37.4 bits (85), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 19/35 (54%)
Query: 1091 NECESHPCQNDGSCLDDPGTFRCVCMPGFTGTQCE 1125
++CE HPC N G C G + C C GF G CE
Sbjct: 48 DQCEGHPCLNQGHCKXGIGDYTCTCAEGFEGKNCE 82
Score = 37.0 bits (84), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 19/35 (54%)
Query: 1167 DDCVSSPCHNGGICKDSIAGYTCECLAGFTGMSCE 1201
D C PC N G CK I YTC C GF G +CE
Sbjct: 48 DQCEGHPCLNQGHCKXGIGDYTCTCAEGFEGKNCE 82
Score = 35.8 bits (81), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 1127 DIDECASNPCLNGGICNDLINTFKCACPIGFTGSHCQIN 1165
D D+C +PCLN G C I + C C GF G +C+ +
Sbjct: 46 DGDQCEGHPCLNQGHCKXGIGDYTCTCAEGFEGKNCEFS 84
Score = 35.4 bits (80), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 37 ANSCDSFPCMNGGTCTLKSLDRYTCTCAPGFTGSQCEL 74
+ C+ PC+N G C + YTCTCA GF G CE
Sbjct: 47 GDQCEGHPCLNQGHCK-XGIGDYTCTCAEGFEGKNCEF 83
Score = 34.3 bits (77), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 943 EDVDECQLSSPCRNGATCHNTNGSYLCECAKGYEGRDCLINT 984
+D D+C+ PC N C G Y C CA+G+EG++C +T
Sbjct: 45 KDGDQCE-GHPCLNQGHCKXGIGDYTCTCAEGFEGKNCEFST 85
Score = 34.3 bits (77), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 187 NECESHPCQNDGSCLDDPGTFRCVCMCEPGYTGQNCE 223
++CE HPC N G C G + C C G+ G+NCE
Sbjct: 48 DQCEGHPCLNQGHCKXGIGDY--TCTCAEGFEGKNCE 82
Score = 33.9 bits (76), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 1392 DIDECGSNPCQHGGICTDHLNGYTCECQIGYTGINCEIN 1430
D D+C +PC + G C + YTC C G+ G NCE +
Sbjct: 46 DGDQCEGHPCLNQGHCKXGIGDYTCTCAEGFEGKNCEFS 84
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 670 NECYSNPCQHAGTCEDRIADYACYCLPMWNGKNCDL 705
++C +PC + G C+ I DY C C + GKNC+
Sbjct: 48 DQCEGHPCLNQGHCKXGIGDYTCTCAEGFEGKNCEF 83
Score = 32.7 bits (73), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 1280 NECYSNPCRNGAKCVDGINRYSCECLPGYTGLHCE 1314
++C +PC N C GI Y+C C G+ G +CE
Sbjct: 48 DQCEGHPCLNQGHCKXGIGDYTCTCAEGFEGKNCE 82
Score = 32.0 bits (71), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 1242 DECASNPCQFGGQCEDLINGYQCRCKPGTSGTNCEININ 1280
D+C +PC G C+ I Y C C G G NCE +
Sbjct: 48 DQCEGHPCLNQGHCKXGIGDYTCTCAEGFEGKNCEFSTR 86
>pdb|3QCW|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), No Splice
Inserts
pdb|3QCW|B Chain B, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), No Splice
Inserts
Length = 1245
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 1253 GQCEDLINGYQCRCKPGTSGTNCEININECYSNPCRNGAKCVDGINRYSCECL-PGYTGL 1311
GQ +D+ + + G + C SNPC+N C DG NRY C+C GY G
Sbjct: 593 GQSKDIRQMAEVQSTAGVKPSCSRETAKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYLGR 652
Query: 1312 HCE 1314
CE
Sbjct: 653 SCE 655
Score = 37.4 bits (85), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 1358 CASDPCLNGGTCEDGLNQFICHCK-PGYGGKRCE 1390
C S+PC N G C DG N+++C C GY G+ CE
Sbjct: 622 CLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCE 655
Score = 35.0 bits (79), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 1396 CGSNPCQHGGICTDHLNGYTCECQ-IGYTGINCE 1428
C SNPC++ G+C D N Y C+C GY G +CE
Sbjct: 622 CLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCE 655
Score = 34.3 bits (77), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 1169 CVSSPCHNGGICKDSIAGYTCECL-AGFTGMSCE 1201
C+S+PC N G+C+D Y C+C G+ G SCE
Sbjct: 622 CLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCE 655
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 42/132 (31%), Gaps = 11/132 (8%)
Query: 249 ECECQSGYRGKNCEENIDDCPGNLCQNGATCMDGINKYSCLCLAT-YTGDLCEQDVDECS 307
E + +G + E C N C+N C DG N+Y C C T Y G CE++ S
Sbjct: 603 EVQSTAGVKPSCSRETAKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCEREATVLS 662
Query: 308 IRPSVCHNGATCTNSVGGFSCICVNGWTGPDCSLNIDDCAGAACFNGATCIDRVGSFYCQ 367
S+ V D SL T D + +
Sbjct: 663 YDGSMFMK----------IQLPVVMHTEAEDVSLRFRSQRAYGILMATTSRDSADTLRLE 712
Query: 368 CTPGKTGLLCHL 379
G+ L +L
Sbjct: 713 LDAGRVKLTVNL 724
Score = 32.7 bits (73), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Query: 228 PCDPSPCQNGGVCRELDNLNYECECQ-SGYRGKNCEE 263
PC +PC+N G+CR+ N Y C+C +GY G++CE
Sbjct: 621 PCLSNPCKNNGMCRDGWN-RYVCDCSGTGYLGRSCER 656
Score = 31.2 bits (69), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 524 CLSNPCSSHGTLDCVQLVNNYHCNCR-PGYMGRHCE 558
CLSNPC ++G C N Y C+C GY+GR CE
Sbjct: 622 CLSNPCKNNGM--CRDGWNRYVCDCSGTGYLGRSCE 655
>pdb|1LMJ|A Chain A, Nmr Study Of The Fibrillin-1 Cbegf12-13 Pair Of Ca2+
Binding Epidermal Growth Factor-like Domains
Length = 86
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 927 DFACHCGVGWTGRYCNE----DVDECQLSSPCRNGATCHNTNGSYLCECAKGYE 976
DF C C G+ + D+DECQ G CHNT GSY CEC G++
Sbjct: 24 DFECKCDEGYESGFMMMKNCMDIDECQRDPLLCRGGVCHNTEGSYRCECPPGHQ 77
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 8/76 (10%)
Query: 302 DVDECSIRPSVCHNGATCTNSVGGFSCICVNGWTG-----PDCSLNIDDCAGAACF-NGA 355
D+DEC I P +C G C N+ G F C C G+ +C ++ID+C G
Sbjct: 2 DIDECRISPDLCGRGQ-CVNTPGDFECKCDEGYESGFMMMKNC-MDIDECQRDPLLCRGG 59
Query: 356 TCIDRVGSFYCQCTPG 371
C + GS+ C+C PG
Sbjct: 60 VCHNTEGSYRCECPPG 75
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 9/88 (10%)
Query: 1089 NVNECESHPCQ-NDGSCLDDPGTFRCVC----MPGFTGTQCETDIDECASNPCL-NGGIC 1142
+++EC P G C++ PG F C C GF + DIDEC +P L GG+C
Sbjct: 2 DIDECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLLCRGGVC 61
Query: 1143 NDLINTFKCACPIGFTGSHCQINIDDCV 1170
++ +++C CP G S NI C+
Sbjct: 62 HNTEGSYRCECPPGHQLSP---NISACI 86
Score = 39.7 bits (91), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Query: 1316 NINECASNPCANG-GVCVDLIDGFKCECPRGYYDARCLS----DVDECASDPCL-NGGTC 1369
+I+EC +P G G CV+ F+C+C GY + D+DEC DP L GG C
Sbjct: 2 DIDECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLLCRGGVC 61
Query: 1370 EDGLNQFICHCKPGY 1384
+ + C C PG+
Sbjct: 62 HNTEGSYRCECPPGH 76
Score = 38.5 bits (88), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Query: 1064 GTCVNTPGSFACNCTQ----GFTGPRCETNVNECESHPCQ-NDGSCLDDPGTFRCVCMPG 1118
G CVNTPG F C C + GF + +++EC+ P G C + G++RC C PG
Sbjct: 16 GQCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLLCRGGVCHNTEGSYRCECPPG 75
Score = 37.7 bits (86), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Query: 1203 NINDCASNP--CHRGECIDGENSFTCACHPGFTGALCNTQ----LDECASNPCQ-FGGQC 1255
+I++C +P C RG+C++ F C C G+ + +DEC +P GG C
Sbjct: 2 DIDECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLLCRGGVC 61
Query: 1256 EDLINGYQCRCKPG 1269
+ Y+C C PG
Sbjct: 62 HNTEGSYRCECPPG 75
Score = 37.4 bits (85), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
Query: 944 DVDECQLSSPCRNGATCHNTNGSYLCECAKGYEG-----RDCLINTDDCASFPCQ-NGGT 997
D+DEC++S C NT G + C+C +GYE ++C+ + D+C P GG
Sbjct: 2 DIDECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNCM-DIDECQRDPLLCRGGV 60
Query: 998 CLDEVGDYSCLCVDG 1012
C + G Y C C G
Sbjct: 61 CHNTEGSYRCECPPG 75
Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 36/76 (47%), Gaps = 8/76 (10%)
Query: 1354 DVDECASDPCLNG-GTCEDGLNQFICHCKPGYGG-----KRCEFDIDECGSNPCQ-HGGI 1406
D+DEC P L G G C + F C C GY K C DIDEC +P GG+
Sbjct: 2 DIDECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNC-MDIDECQRDPLLCRGGV 60
Query: 1407 CTDHLNGYTCECQIGY 1422
C + Y CEC G+
Sbjct: 61 CHNTEGSYRCECPPGH 76
Score = 35.4 bits (80), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Query: 1127 DIDECASNPCLNG-GICNDLINTFKCACPIGFTGSHCQI----NIDDCVSSPCH-NGGIC 1180
DIDEC +P L G G C + F+C C G+ + +ID+C P GG+C
Sbjct: 2 DIDECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLLCRGGVC 61
Query: 1181 KDSIAGYTCECLAG 1194
++ Y CEC G
Sbjct: 62 HNTEGSYRCECPPG 75
Score = 35.0 bits (79), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 160 GTCVNTPGSFACNCTQ----GFTGPRCETNVNECESHPCQ-NDGSCLDDPGTFRCVC 211
G CVNTPG F C C + GF + +++EC+ P G C + G++RC C
Sbjct: 16 GQCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLLCRGGVCHNTEGSYRCEC 72
Score = 33.9 bits (76), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Query: 1278 NINECYSNPCRNG-AKCVDGINRYSCECLPGY-TGLHCETN---INECASNPCA-NGGVC 1331
+I+EC +P G +CV+ + C+C GY +G N I+EC +P GGVC
Sbjct: 2 DIDECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLLCRGGVC 61
Query: 1332 VDLIDGFKCECPRGY 1346
+ ++CECP G+
Sbjct: 62 HNTEGSYRCECPPGH 76
>pdb|1CCF|A Chain A, How An Epidermal Growth Factor (Egf)-Like Domain Binds
Calcium-High Resolution Nmr Structure Of The Calcium Form
Of The Nh2-Terminal Egf-Like Domain In Coagulation Factor
X
Length = 42
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 22/36 (61%)
Query: 985 DDCASFPCQNGGTCLDEVGDYSCLCVDGFSGKHCEV 1020
D C PC N G C +GDY+C C +GF GK+CE
Sbjct: 4 DQCEGHPCLNQGHCKXGIGDYTCTCAEGFEGKNCEF 39
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 23/39 (58%)
Query: 1353 SDVDECASDPCLNGGTCEDGLNQFICHCKPGYGGKRCEF 1391
D D+C PCLN G C+ G+ + C C G+ GK CEF
Sbjct: 1 KDGDQCEGHPCLNQGHCKXGIGDYTCTCAEGFEGKNCEF 39
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 19/35 (54%)
Query: 1167 DDCVSSPCHNGGICKDSIAGYTCECLAGFTGMSCE 1201
D C PC N G CK I YTC C GF G +CE
Sbjct: 4 DQCEGHPCLNQGHCKXGIGDYTCTCAEGFEGKNCE 38
Score = 36.6 bits (83), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 19/35 (54%)
Query: 1091 NECESHPCQNDGSCLDDPGTFRCVCMPGFTGTQCE 1125
++CE HPC N G C G + C C GF G CE
Sbjct: 4 DQCEGHPCLNQGHCKXGIGDYTCTCAEGFEGKNCE 38
Score = 36.2 bits (82), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 1127 DIDECASNPCLNGGICNDLINTFKCACPIGFTGSHCQINI 1166
D D+C +PCLN G C I + C C GF G +C+ +
Sbjct: 2 DGDQCEGHPCLNQGHCKXGIGDYTCTCAEGFEGKNCEFST 41
Score = 35.8 bits (81), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 37 ANSCDSFPCMNGGTCTLKSLDRYTCTCAPGFTGSQCEL 74
+ C+ PC+N G C + YTCTCA GF G CE
Sbjct: 3 GDQCEGHPCLNQGHCKX-GIGDYTCTCAEGFEGKNCEF 39
Score = 34.3 bits (77), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 670 NECYSNPCQHAGTCEDRIADYACYCLPMWNGKNCDL 705
++C +PC + G C+ I DY C C + GKNC+
Sbjct: 4 DQCEGHPCLNQGHCKXGIGDYTCTCAEGFEGKNCEF 39
Score = 34.3 bits (77), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 943 EDVDECQLSSPCRNGATCHNTNGSYLCECAKGYEGRDCLINT 984
+D D+C+ PC N C G Y C CA+G+EG++C +T
Sbjct: 1 KDGDQCE-GHPCLNQGHCKXGIGDYTCTCAEGFEGKNCEFST 41
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 187 NECESHPCQNDGSCLDDPGTFRCVCMCEPGYTGQNCE 223
++CE HPC N G C G + C C G+ G+NCE
Sbjct: 4 DQCEGHPCLNQGHCKXGIGDYTCTCA--EGFEGKNCE 38
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 1392 DIDECGSNPCQHGGICTDHLNGYTCECQIGYTGINCEINI 1431
D D+C +PC + G C + YTC C G+ G NCE +
Sbjct: 2 DGDQCEGHPCLNQGHCKXGIGDYTCTCAEGFEGKNCEFST 41
Score = 32.7 bits (73), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 1280 NECYSNPCRNGAKCVDGINRYSCECLPGYTGLHCE 1314
++C +PC N C GI Y+C C G+ G +CE
Sbjct: 4 DQCEGHPCLNQGHCKXGIGDYTCTCAEGFEGKNCE 38
Score = 31.6 bits (70), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 1242 DECASNPCQFGGQCEDLINGYQCRCKPGTSGTNCEINI 1279
D+C +PC G C+ I Y C C G G NCE +
Sbjct: 4 DQCEGHPCLNQGHCKXGIGDYTCTCAEGFEGKNCEFST 41
>pdb|3POY|A Chain A, Crystal Structure Of The Alpha-Neurexin-1 Ectodomain, Lns
2-6
Length = 1019
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 1253 GQCEDLINGYQCRCKPGTSGTNCEININECYSNPCRNGAKCVDGINRYSCECL-PGYTGL 1311
GQ +D+ + + G + C SNPC+N C DG NRY C+C GY G
Sbjct: 368 GQSKDIRQMAEVQSTAGVKPSCSRETAKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYLGR 427
Query: 1312 HCE 1314
CE
Sbjct: 428 SCE 430
Score = 37.4 bits (85), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 1358 CASDPCLNGGTCEDGLNQFICHCK-PGYGGKRCE 1390
C S+PC N G C DG N+++C C GY G+ CE
Sbjct: 397 CLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCE 430
Score = 34.7 bits (78), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 1396 CGSNPCQHGGICTDHLNGYTCECQ-IGYTGINCE 1428
C SNPC++ G+C D N Y C+C GY G +CE
Sbjct: 397 CLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCE 430
Score = 34.3 bits (77), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 1169 CVSSPCHNGGICKDSIAGYTCECL-AGFTGMSCE 1201
C+S+PC N G+C+D Y C+C G+ G SCE
Sbjct: 397 CLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCE 430
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 43/133 (32%), Gaps = 11/133 (8%)
Query: 249 ECECQSGYRGKNCEENIDDCPGNLCQNGATCMDGINKYSCLCLAT-YTGDLCEQDVDECS 307
E + +G + E C N C+N C DG N+Y C C T Y G CE++ S
Sbjct: 378 EVQSTAGVKPSCSRETAKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCEREATVLS 437
Query: 308 IRPSVCHNGATCTNSVGGFSCICVNGWTGPDCSLNIDDCAGAACFNGATCIDRVGSFYCQ 367
S+ V D SL T D + +
Sbjct: 438 YDGSMFMK----------IQLPVVMHTEAEDVSLRFRSQRAYGILMATTSRDSADTLRLE 487
Query: 368 CTPGKTGLLCHLE 380
G+ L +L+
Sbjct: 488 LDAGRVKLTVNLD 500
Score = 32.7 bits (73), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Query: 228 PCDPSPCQNGGVCRELDNLNYECECQ-SGYRGKNCEE 263
PC +PC+N G+CR+ N Y C+C +GY G++CE
Sbjct: 396 PCLSNPCKNNGMCRDGWN-RYVCDCSGTGYLGRSCER 431
Score = 31.2 bits (69), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 524 CLSNPCSSHGTLDCVQLVNNYHCNCR-PGYMGRHCE 558
CLSNPC ++G C N Y C+C GY+GR CE
Sbjct: 397 CLSNPCKNNGM--CRDGWNRYVCDCSGTGYLGRSCE 430
>pdb|1Z6C|A Chain A, Solution Structure Of An Egf Pair (Egf34) From Vitamin K-
Dependent Protein S
Length = 87
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 42/87 (48%), Gaps = 8/87 (9%)
Query: 301 QDVDECSIRPSVCHNGATCTNSVGGFSCICVNGW----TGPDCSLNIDDCAGAACFNGAT 356
+DVDECS++PS+C A C N G F C C G+ C +ID+C+ C
Sbjct: 1 KDVDECSLKPSICGT-AVCKNIPGDFECECPEGYRYNLKSKSCE-DIDECSENMC--AQL 56
Query: 357 CIDRVGSFYCQCTPGKTGLLCHLEDAC 383
C++ G + C C K L + +C
Sbjct: 57 CVNYPGGYTCYCDGKKGFKLAQDQKSC 83
Score = 39.7 bits (91), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 36/71 (50%), Gaps = 8/71 (11%)
Query: 1353 SDVDECASDPCLNG-GTCEDGLNQFICHCKPGY----GGKRCEFDIDECGSNPCQHGGIC 1407
DVDEC+ P + G C++ F C C GY K CE DIDEC N C +C
Sbjct: 1 KDVDECSLKPSICGTAVCKNIPGDFECECPEGYRYNLKSKSCE-DIDECSENMCAQ--LC 57
Query: 1408 TDHLNGYTCEC 1418
++ GYTC C
Sbjct: 58 VNYPGGYTCYC 68
Score = 35.0 bits (79), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 42/89 (47%), Gaps = 15/89 (16%)
Query: 943 EDVDECQLSSPCRNGATCHNTNGSYLCECAKGY----EGRDCLINTDDCASFPCQNGGTC 998
+DVDEC L A C N G + CEC +GY + + C + D+C+ C C
Sbjct: 1 KDVDECSLKPSICGTAVCKNIPGDFECECPEGYRYNLKSKSCE-DIDECSENMCAQ--LC 57
Query: 999 LDEVGDYSCLCVDGFSG-------KHCEV 1020
++ G Y+C C DG G K CEV
Sbjct: 58 VNYPGGYTCYC-DGKKGFKLAQDQKSCEV 85
Score = 34.7 bits (78), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 8/71 (11%)
Query: 1126 TDIDECASNPCLNG-GICNDLINTFKCACPIGF----TGSHCQINIDDCVSSPCHNGGIC 1180
D+DEC+ P + G +C ++ F+C CP G+ C+ +ID+C + C +C
Sbjct: 1 KDVDECSLKPSICGTAVCKNIPGDFECECPEGYRYNLKSKSCE-DIDECSENMCAQ--LC 57
Query: 1181 KDSIAGYTCEC 1191
+ GYTC C
Sbjct: 58 VNYPGGYTCYC 68
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Query: 1315 TNINECASNPCANG-GVCVDLIDGFKCECPRGY---YDARCLSDVDECASDPCLNGGTCE 1370
+++EC+ P G VC ++ F+CECP GY ++ D+DEC+ + C C
Sbjct: 1 KDVDECSLKPSICGTAVCKNIPGDFECECPEGYRYNLKSKSCEDIDECSENMCAQ--LCV 58
Query: 1371 DGLNQFICHCKPGYGGK 1387
+ + C+C G K
Sbjct: 59 NYPGGYTCYCDGKKGFK 75
Score = 30.8 bits (68), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 7/63 (11%)
Query: 160 GTCVNTPGSFACNCTQGF----TGPRCETNVNECESHPCQNDGSCLDDPGTFRCVCMCEP 215
C N PG F C C +G+ CE +++EC + C C++ PG + C C +
Sbjct: 16 AVCKNIPGDFECECPEGYRYNLKSKSCE-DIDECSENMCAQ--LCVNYPGGYTCYCDGKK 72
Query: 216 GYT 218
G+
Sbjct: 73 GFK 75
Score = 30.4 bits (67), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 9/66 (13%)
Query: 1064 GTCVNTPGSFACNCTQGF----TGPRCETNVNECESHPCQNDGSCLDDPGTFRCVC--MP 1117
C N PG F C C +G+ CE +++EC + C C++ PG + C C
Sbjct: 16 AVCKNIPGDFECECPEGYRYNLKSKSCE-DIDECSENMCAQ--LCVNYPGGYTCYCDGKK 72
Query: 1118 GFTGTQ 1123
GF Q
Sbjct: 73 GFKLAQ 78
>pdb|2OYE|P Chain P, Indomethacin-(r)-alpha-ethyl-ethanolamide Bound To
Cyclooxygenase-1
pdb|2OYU|P Chain P, Indomethacin-(S)-Alpha-Ethyl-Ethanolamide Bound To
Cyclooxygenase-1
Length = 600
Score = 40.8 bits (94), Expect = 0.007, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 1393 IDECGSNPCQHGGICTDH-LNGYTCEC-QIGYTGINCEI 1429
++ C PCQH GIC L+ Y C+C + GY+G NC I
Sbjct: 33 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTI 71
Score = 39.7 bits (91), Expect = 0.016, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 27 FSASLCEIPVANSCDSFPCMNGGTCTLKSLDRYTCTCA-PGFTGSQCELQD 76
FSA N C +PC + G C LDRY C C G++G C + +
Sbjct: 23 FSADPGAPAPVNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTIPE 73
Score = 39.3 bits (90), Expect = 0.024, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 228 PCDPSPCQNGGVCRELDNLNYECEC-QSGYRGKNC 261
PC PCQ+ G+C Y+C+C ++GY G NC
Sbjct: 35 PCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNC 69
Score = 35.4 bits (80), Expect = 0.30, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 864 PINIDDCAFKPCRHGGTCIDL-VNAYKCVC-QVPYTGHDC 901
P ++ C + PC+H G C+ ++ Y+C C + Y+G +C
Sbjct: 30 PAPVNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNC 69
Score = 35.4 bits (80), Expect = 0.31, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 1279 INECYSNPCRNGAKCVD-GINRYSCECL-PGYTGLHC 1313
+N C PC++ CV G++RY C+C GY+G +C
Sbjct: 33 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNC 69
Score = 34.7 bits (78), Expect = 0.57, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 1317 INECASNPCANGGVCVDL-IDGFKCECPR-GYYDARC 1351
+N C PC + G+CV +D ++C+C R GY C
Sbjct: 33 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNC 69
Score = 34.3 bits (77), Expect = 0.77, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 155 PCEHDGTCVNTP-GSFACNCTQ-GFTGPRC 182
PC+H G CV + C+CT+ G++GP C
Sbjct: 40 PCQHQGICVRFGLDRYQCDCTRTGYSGPNC 69
Score = 34.3 bits (77), Expect = 0.77, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 1059 PCEHDGTCVNTP-GSFACNCTQ-GFTGPRC 1086
PC+H G CV + C+CT+ G++GP C
Sbjct: 40 PCQHQGICVRFGLDRYQCDCTRTGYSGPNC 69
Score = 33.9 bits (76), Expect = 0.98, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 434 IDDCAFKPCRHGGTCIDL-VNAYKCVC-QVPYTGHDC 468
++ C + PC+H G C+ ++ Y+C C + Y+G +C
Sbjct: 33 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNC 69
Score = 33.1 bits (74), Expect = 1.4, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 180 PRCETNVNECESHPCQNDGSCLDDPGTFRCVCMC-EPGYTGQNC 222
P VN C +PCQ+ G C+ G R C C GY+G NC
Sbjct: 27 PGAPAPVNPCCYYPCQHQGICVRF-GLDRYQCDCTRTGYSGPNC 69
Score = 33.1 bits (74), Expect = 1.5, Method: Composition-based stats.
Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 1431 IDDCAFKPCRHGGTCIDL-VNAYKCVCAKAG 1460
++ C + PC+H G C+ ++ Y+C C + G
Sbjct: 33 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTG 63
>pdb|1EBV|A Chain A, Ovine Pghs-1 Complexed With Salicyl Hydroxamic Acid
Length = 551
Score = 40.8 bits (94), Expect = 0.007, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 1393 IDECGSNPCQHGGICTDH-LNGYTCEC-QIGYTGINCEI 1429
++ C PCQH GIC L+ Y C+C + GY+G NC I
Sbjct: 1 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTI 39
Score = 39.3 bits (90), Expect = 0.023, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 38 NSCDSFPCMNGGTCTLKSLDRYTCTCA-PGFTGSQCELQD 76
N C +PC + G C LDRY C C G++G C + +
Sbjct: 2 NPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTIPE 41
Score = 39.3 bits (90), Expect = 0.024, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 228 PCDPSPCQNGGVCRELDNLNYECEC-QSGYRGKNC 261
PC PCQ+ G+C Y+C+C ++GY G NC
Sbjct: 3 PCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNC 37
Score = 35.4 bits (80), Expect = 0.31, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 1279 INECYSNPCRNGAKCVD-GINRYSCECL-PGYTGLHC 1313
+N C PC++ CV G++RY C+C GY+G +C
Sbjct: 1 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNC 37
Score = 34.7 bits (78), Expect = 0.57, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 1317 INECASNPCANGGVCVDL-IDGFKCECPR-GYYDARC 1351
+N C PC + G+CV +D ++C+C R GY C
Sbjct: 1 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNC 37
Score = 34.3 bits (77), Expect = 0.77, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 155 PCEHDGTCVNTP-GSFACNCTQ-GFTGPRC 182
PC+H G CV + C+CT+ G++GP C
Sbjct: 8 PCQHQGICVRFGLDRYQCDCTRTGYSGPNC 37
Score = 34.3 bits (77), Expect = 0.77, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 1059 PCEHDGTCVNTP-GSFACNCTQ-GFTGPRC 1086
PC+H G CV + C+CT+ G++GP C
Sbjct: 8 PCQHQGICVRFGLDRYQCDCTRTGYSGPNC 37
Score = 33.9 bits (76), Expect = 0.98, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 434 IDDCAFKPCRHGGTCIDL-VNAYKCVC-QVPYTGHDC 468
++ C + PC+H G C+ ++ Y+C C + Y+G +C
Sbjct: 1 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNC 37
Score = 33.9 bits (76), Expect = 0.98, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 867 IDDCAFKPCRHGGTCIDL-VNAYKCVC-QVPYTGHDC 901
++ C + PC+H G C+ ++ Y+C C + Y+G +C
Sbjct: 1 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNC 37
Score = 33.1 bits (74), Expect = 1.5, Method: Composition-based stats.
Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 1431 IDDCAFKPCRHGGTCIDL-VNAYKCVCAKAG 1460
++ C + PC+H G C+ ++ Y+C C + G
Sbjct: 1 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTG 31
Score = 32.7 bits (73), Expect = 2.1, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 186 VNECESHPCQNDGSCLDDPGTFRCVCMC-EPGYTGQNC 222
VN C +PCQ+ G C+ G R C C GY+G NC
Sbjct: 1 VNPCCYYPCQHQGICVRF-GLDRYQCDCTRTGYSGPNC 37
>pdb|1U67|A Chain A, Crystal Structure Of Arachidonic Acid Bound To A Mutant Of
Prostagladin H Synthase-1 That Forms Predominantly
11-hpete
Length = 600
Score = 40.8 bits (94), Expect = 0.007, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 1393 IDECGSNPCQHGGICTDH-LNGYTCEC-QIGYTGINCEI 1429
++ C PCQH GIC L+ Y C+C + GY+G NC I
Sbjct: 33 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTI 71
Score = 39.7 bits (91), Expect = 0.016, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 27 FSASLCEIPVANSCDSFPCMNGGTCTLKSLDRYTCTCA-PGFTGSQCELQD 76
FSA N C +PC + G C LDRY C C G++G C + +
Sbjct: 23 FSADPGAPAPVNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTIPE 73
Score = 39.3 bits (90), Expect = 0.024, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 228 PCDPSPCQNGGVCRELDNLNYECEC-QSGYRGKNC 261
PC PCQ+ G+C Y+C+C ++GY G NC
Sbjct: 35 PCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNC 69
Score = 35.4 bits (80), Expect = 0.31, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 864 PINIDDCAFKPCRHGGTCIDL-VNAYKCVC-QVPYTGHDC 901
P ++ C + PC+H G C+ ++ Y+C C + Y+G +C
Sbjct: 30 PAPVNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNC 69
Score = 35.4 bits (80), Expect = 0.31, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 1279 INECYSNPCRNGAKCVD-GINRYSCECL-PGYTGLHC 1313
+N C PC++ CV G++RY C+C GY+G +C
Sbjct: 33 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNC 69
Score = 34.7 bits (78), Expect = 0.57, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 1317 INECASNPCANGGVCVDL-IDGFKCECPR-GYYDARC 1351
+N C PC + G+CV +D ++C+C R GY C
Sbjct: 33 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNC 69
Score = 34.3 bits (77), Expect = 0.77, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 155 PCEHDGTCVNTP-GSFACNCTQ-GFTGPRC 182
PC+H G CV + C+CT+ G++GP C
Sbjct: 40 PCQHQGICVRFGLDRYQCDCTRTGYSGPNC 69
Score = 34.3 bits (77), Expect = 0.77, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 1059 PCEHDGTCVNTP-GSFACNCTQ-GFTGPRC 1086
PC+H G CV + C+CT+ G++GP C
Sbjct: 40 PCQHQGICVRFGLDRYQCDCTRTGYSGPNC 69
Score = 33.9 bits (76), Expect = 0.98, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 434 IDDCAFKPCRHGGTCIDL-VNAYKCVC-QVPYTGHDC 468
++ C + PC+H G C+ ++ Y+C C + Y+G +C
Sbjct: 33 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNC 69
Score = 33.1 bits (74), Expect = 1.4, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 180 PRCETNVNECESHPCQNDGSCLDDPGTFRCVCMC-EPGYTGQNC 222
P VN C +PCQ+ G C+ G R C C GY+G NC
Sbjct: 27 PGAPAPVNPCCYYPCQHQGICVRF-GLDRYQCDCTRTGYSGPNC 69
Score = 33.1 bits (74), Expect = 1.5, Method: Composition-based stats.
Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 1431 IDDCAFKPCRHGGTCIDL-VNAYKCVCAKAG 1460
++ C + PC+H G C+ ++ Y+C C + G
Sbjct: 33 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTG 63
>pdb|1HT5|A Chain A, The 2.75 Angstrom Resolution Model Of Ovine Cox-1 Complexed
With Methyl Ester Flurbiprofen
pdb|1HT5|B Chain B, The 2.75 Angstrom Resolution Model Of Ovine Cox-1 Complexed
With Methyl Ester Flurbiprofen
pdb|1HT8|A Chain A, The 2.7 Angstrom Resolution Model Of Ovine Cox-1 Complexed
With Alclofenac
pdb|1HT8|B Chain B, The 2.7 Angstrom Resolution Model Of Ovine Cox-1 Complexed
With Alclofenac
Length = 551
Score = 40.8 bits (94), Expect = 0.007, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 1393 IDECGSNPCQHGGICTDH-LNGYTCEC-QIGYTGINCEI 1429
++ C PCQH GIC L+ Y C+C + GY+G NC I
Sbjct: 1 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTI 39
Score = 39.3 bits (90), Expect = 0.023, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 38 NSCDSFPCMNGGTCTLKSLDRYTCTCA-PGFTGSQCELQD 76
N C +PC + G C LDRY C C G++G C + +
Sbjct: 2 NPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTIPE 41
Score = 39.3 bits (90), Expect = 0.024, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 228 PCDPSPCQNGGVCRELDNLNYECEC-QSGYRGKNC 261
PC PCQ+ G+C Y+C+C ++GY G NC
Sbjct: 3 PCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNC 37
Score = 35.4 bits (80), Expect = 0.31, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 1279 INECYSNPCRNGAKCVD-GINRYSCECL-PGYTGLHC 1313
+N C PC++ CV G++RY C+C GY+G +C
Sbjct: 1 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNC 37
Score = 34.7 bits (78), Expect = 0.57, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 1317 INECASNPCANGGVCVDL-IDGFKCECPR-GYYDARC 1351
+N C PC + G+CV +D ++C+C R GY C
Sbjct: 1 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNC 37
Score = 34.3 bits (77), Expect = 0.77, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 155 PCEHDGTCVNTP-GSFACNCTQ-GFTGPRC 182
PC+H G CV + C+CT+ G++GP C
Sbjct: 8 PCQHQGICVRFGLDRYQCDCTRTGYSGPNC 37
Score = 34.3 bits (77), Expect = 0.77, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 1059 PCEHDGTCVNTP-GSFACNCTQ-GFTGPRC 1086
PC+H G CV + C+CT+ G++GP C
Sbjct: 8 PCQHQGICVRFGLDRYQCDCTRTGYSGPNC 37
Score = 33.9 bits (76), Expect = 0.98, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 434 IDDCAFKPCRHGGTCIDL-VNAYKCVC-QVPYTGHDC 468
++ C + PC+H G C+ ++ Y+C C + Y+G +C
Sbjct: 1 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNC 37
Score = 33.9 bits (76), Expect = 0.98, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 867 IDDCAFKPCRHGGTCIDL-VNAYKCVC-QVPYTGHDC 901
++ C + PC+H G C+ ++ Y+C C + Y+G +C
Sbjct: 1 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNC 37
Score = 33.1 bits (74), Expect = 1.5, Method: Composition-based stats.
Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 1431 IDDCAFKPCRHGGTCIDL-VNAYKCVCAKAG 1460
++ C + PC+H G C+ ++ Y+C C + G
Sbjct: 1 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTG 31
Score = 32.7 bits (73), Expect = 2.1, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 186 VNECESHPCQNDGSCLDDPGTFRCVCMC-EPGYTGQNC 222
VN C +PCQ+ G C+ G R C C GY+G NC
Sbjct: 1 VNPCCYYPCQHQGICVRF-GLDRYQCDCTRTGYSGPNC 37
>pdb|1PRH|A Chain A, The X-Ray Crystal Structure Of The Membrane Protein
Prostaglandin H2 Synthase-1
pdb|1PRH|B Chain B, The X-Ray Crystal Structure Of The Membrane Protein
Prostaglandin H2 Synthase-1
Length = 554
Score = 40.8 bits (94), Expect = 0.007, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 1393 IDECGSNPCQHGGICTDH-LNGYTCEC-QIGYTGINCEI 1429
++ C PCQH GIC L+ Y C+C + GY+G NC I
Sbjct: 1 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTI 39
Score = 39.3 bits (90), Expect = 0.023, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 38 NSCDSFPCMNGGTCTLKSLDRYTCTCA-PGFTGSQCELQD 76
N C +PC + G C LDRY C C G++G C + +
Sbjct: 2 NPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTIPE 41
Score = 39.3 bits (90), Expect = 0.024, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 228 PCDPSPCQNGGVCRELDNLNYECEC-QSGYRGKNC 261
PC PCQ+ G+C Y+C+C ++GY G NC
Sbjct: 3 PCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNC 37
Score = 35.4 bits (80), Expect = 0.31, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 1279 INECYSNPCRNGAKCVD-GINRYSCECL-PGYTGLHC 1313
+N C PC++ CV G++RY C+C GY+G +C
Sbjct: 1 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNC 37
Score = 34.7 bits (78), Expect = 0.57, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 1317 INECASNPCANGGVCVDL-IDGFKCECPR-GYYDARC 1351
+N C PC + G+CV +D ++C+C R GY C
Sbjct: 1 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNC 37
Score = 34.3 bits (77), Expect = 0.77, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 155 PCEHDGTCVNTP-GSFACNCTQ-GFTGPRC 182
PC+H G CV + C+CT+ G++GP C
Sbjct: 8 PCQHQGICVRFGLDRYQCDCTRTGYSGPNC 37
Score = 34.3 bits (77), Expect = 0.77, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 1059 PCEHDGTCVNTP-GSFACNCTQ-GFTGPRC 1086
PC+H G CV + C+CT+ G++GP C
Sbjct: 8 PCQHQGICVRFGLDRYQCDCTRTGYSGPNC 37
Score = 33.9 bits (76), Expect = 0.98, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 434 IDDCAFKPCRHGGTCIDL-VNAYKCVC-QVPYTGHDC 468
++ C + PC+H G C+ ++ Y+C C + Y+G +C
Sbjct: 1 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNC 37
Score = 33.9 bits (76), Expect = 0.98, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 867 IDDCAFKPCRHGGTCIDL-VNAYKCVC-QVPYTGHDC 901
++ C + PC+H G C+ ++ Y+C C + Y+G +C
Sbjct: 1 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNC 37
Score = 33.1 bits (74), Expect = 1.5, Method: Composition-based stats.
Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 1431 IDDCAFKPCRHGGTCIDL-VNAYKCVCAKAG 1460
++ C + PC+H G C+ ++ Y+C C + G
Sbjct: 1 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTG 31
Score = 32.7 bits (73), Expect = 2.1, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 186 VNECESHPCQNDGSCLDDPGTFRCVCMC-EPGYTGQNC 222
VN C +PCQ+ G C+ G R C C GY+G NC
Sbjct: 1 VNPCCYYPCQHQGICVRF-GLDRYQCDCTRTGYSGPNC 37
>pdb|3N8Y|B Chain B, Structure Of Aspirin Acetylated Cyclooxygenase-1 In Complex
With Diclofenac
Length = 553
Score = 40.8 bits (94), Expect = 0.007, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 1393 IDECGSNPCQHGGICTDH-LNGYTCEC-QIGYTGINCEI 1429
++ C PCQH GIC L+ Y C+C + GY+G NC I
Sbjct: 2 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTI 40
Score = 39.3 bits (90), Expect = 0.023, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 35 PVANSCDSFPCMNGGTCTLKSLDRYTCTCA-PGFTGSQCELQD 76
PV N C +PC + G C LDRY C C G++G C + +
Sbjct: 1 PV-NPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTIPE 42
Score = 39.3 bits (90), Expect = 0.024, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 228 PCDPSPCQNGGVCRELDNLNYECEC-QSGYRGKNC 261
PC PCQ+ G+C Y+C+C ++GY G NC
Sbjct: 4 PCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNC 38
Score = 35.4 bits (80), Expect = 0.31, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 1279 INECYSNPCRNGAKCVD-GINRYSCECL-PGYTGLHC 1313
+N C PC++ CV G++RY C+C GY+G +C
Sbjct: 2 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNC 38
Score = 34.7 bits (78), Expect = 0.58, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 1317 INECASNPCANGGVCVDL-IDGFKCECPR-GYYDARC 1351
+N C PC + G+CV +D ++C+C R GY C
Sbjct: 2 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNC 38
Score = 34.3 bits (77), Expect = 0.77, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 155 PCEHDGTCVNTP-GSFACNCTQ-GFTGPRC 182
PC+H G CV + C+CT+ G++GP C
Sbjct: 9 PCQHQGICVRFGLDRYQCDCTRTGYSGPNC 38
Score = 34.3 bits (77), Expect = 0.77, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 1059 PCEHDGTCVNTP-GSFACNCTQ-GFTGPRC 1086
PC+H G CV + C+CT+ G++GP C
Sbjct: 9 PCQHQGICVRFGLDRYQCDCTRTGYSGPNC 38
Score = 33.9 bits (76), Expect = 0.99, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 434 IDDCAFKPCRHGGTCIDL-VNAYKCVC-QVPYTGHDC 468
++ C + PC+H G C+ ++ Y+C C + Y+G +C
Sbjct: 2 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNC 38
Score = 33.9 bits (76), Expect = 0.99, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 867 IDDCAFKPCRHGGTCIDL-VNAYKCVC-QVPYTGHDC 901
++ C + PC+H G C+ ++ Y+C C + Y+G +C
Sbjct: 2 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNC 38
Score = 33.1 bits (74), Expect = 1.5, Method: Composition-based stats.
Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 1431 IDDCAFKPCRHGGTCIDL-VNAYKCVCAKAG 1460
++ C + PC+H G C+ ++ Y+C C + G
Sbjct: 2 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTG 32
Score = 32.7 bits (73), Expect = 2.1, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 186 VNECESHPCQNDGSCLDDPGTFRCVCMC-EPGYTGQNC 222
VN C +PCQ+ G C+ G R C C GY+G NC
Sbjct: 2 VNPCCYYPCQHQGICVRF-GLDRYQCDCTRTGYSGPNC 38
>pdb|1DIY|A Chain A, Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Active Site Of Pghs-1
pdb|1Q4G|A Chain A, 2.0 Angstrom Crystal Structure Of Ovine Prostaglandin H2
Synthase-1, In Complex With Alpha-Methyl-4-Biphenylacetic
Acid
pdb|1Q4G|B Chain B, 2.0 Angstrom Crystal Structure Of Ovine Prostaglandin H2
Synthase-1, In Complex With Alpha-Methyl-4-Biphenylacetic
Acid
pdb|2AYL|A Chain A, 2.0 Angstrom Crystal Structure Of Manganese Protoporphyrin
Ix- Reconstituted Ovine Prostaglandin H2 Synthase-1
Complexed With Flurbiprofen
pdb|2AYL|B Chain B, 2.0 Angstrom Crystal Structure Of Manganese Protoporphyrin
Ix- Reconstituted Ovine Prostaglandin H2 Synthase-1
Complexed With Flurbiprofen
pdb|3KK6|A Chain A, Crystal Structure Of Cyclooxygenase-1 In Complex With
Celecoxib
pdb|3KK6|B Chain B, Crystal Structure Of Cyclooxygenase-1 In Complex With
Celecoxib
pdb|3N8V|A Chain A, Crystal Structure Of Unoccupied Cyclooxygenase-1
pdb|3N8V|B Chain B, Crystal Structure Of Unoccupied Cyclooxygenase-1
pdb|3N8W|A Chain A, Crystal Structure Of R120qNATIVE CYCLOOXYGENASE-1
Heterodimer Mutant In Complex With Flurbiprofen
pdb|3N8X|A Chain A, Crystal Structure Of Cyclooxygenase-1 In Complex With
Nimesulide
pdb|3N8X|B Chain B, Crystal Structure Of Cyclooxygenase-1 In Complex With
Nimesulide
pdb|3N8Y|A Chain A, Structure Of Aspirin Acetylated Cyclooxygenase-1 In Complex
With Diclofenac
pdb|3N8Z|A Chain A, Crystal Structure Of Cyclooxygenase-1 In Complex With
Flurbiprofen
pdb|3N8Z|B Chain B, Crystal Structure Of Cyclooxygenase-1 In Complex With
Flurbiprofen
Length = 553
Score = 40.8 bits (94), Expect = 0.007, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 1393 IDECGSNPCQHGGICTDH-LNGYTCEC-QIGYTGINCEI 1429
++ C PCQH GIC L+ Y C+C + GY+G NC I
Sbjct: 2 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTI 40
Score = 39.3 bits (90), Expect = 0.023, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 35 PVANSCDSFPCMNGGTCTLKSLDRYTCTCA-PGFTGSQCELQD 76
PV N C +PC + G C LDRY C C G++G C + +
Sbjct: 1 PV-NPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTIPE 42
Score = 39.3 bits (90), Expect = 0.024, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 228 PCDPSPCQNGGVCRELDNLNYECEC-QSGYRGKNC 261
PC PCQ+ G+C Y+C+C ++GY G NC
Sbjct: 4 PCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNC 38
Score = 35.4 bits (80), Expect = 0.31, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 1279 INECYSNPCRNGAKCVD-GINRYSCECL-PGYTGLHC 1313
+N C PC++ CV G++RY C+C GY+G +C
Sbjct: 2 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNC 38
Score = 34.7 bits (78), Expect = 0.58, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 1317 INECASNPCANGGVCVDL-IDGFKCECPR-GYYDARC 1351
+N C PC + G+CV +D ++C+C R GY C
Sbjct: 2 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNC 38
Score = 34.3 bits (77), Expect = 0.77, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 155 PCEHDGTCVNTP-GSFACNCTQ-GFTGPRC 182
PC+H G CV + C+CT+ G++GP C
Sbjct: 9 PCQHQGICVRFGLDRYQCDCTRTGYSGPNC 38
Score = 34.3 bits (77), Expect = 0.77, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 1059 PCEHDGTCVNTP-GSFACNCTQ-GFTGPRC 1086
PC+H G CV + C+CT+ G++GP C
Sbjct: 9 PCQHQGICVRFGLDRYQCDCTRTGYSGPNC 38
Score = 33.9 bits (76), Expect = 0.99, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 434 IDDCAFKPCRHGGTCIDL-VNAYKCVC-QVPYTGHDC 468
++ C + PC+H G C+ ++ Y+C C + Y+G +C
Sbjct: 2 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNC 38
Score = 33.9 bits (76), Expect = 0.99, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 867 IDDCAFKPCRHGGTCIDL-VNAYKCVC-QVPYTGHDC 901
++ C + PC+H G C+ ++ Y+C C + Y+G +C
Sbjct: 2 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNC 38
Score = 33.1 bits (74), Expect = 1.5, Method: Composition-based stats.
Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 1431 IDDCAFKPCRHGGTCIDL-VNAYKCVCAKAG 1460
++ C + PC+H G C+ ++ Y+C C + G
Sbjct: 2 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTG 32
Score = 32.7 bits (73), Expect = 2.1, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 186 VNECESHPCQNDGSCLDDPGTFRCVCMC-EPGYTGQNC 222
VN C +PCQ+ G C+ G R C C GY+G NC
Sbjct: 2 VNPCCYYPCQHQGICVRF-GLDRYQCDCTRTGYSGPNC 38
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 40.8 bits (94), Expect = 0.007, Method: Composition-based stats.
Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 15/103 (14%)
Query: 1830 LINADADINVPDNSGKTALHWXXXXXXXXXXXXLLSHGVNP---------------REGS 1874
L++ AD N D+ G+T LH+ LLS G +P G
Sbjct: 56 LLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGH 115
Query: 1875 YGACKALLDNFANREITDHMDRLPRDVASERLHHDIVRLLDEH 1917
K LL A+ +D R P D+A E + +IV+LL++
Sbjct: 116 KEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLLEKQ 158
Score = 37.7 bits (86), Expect = 0.068, Method: Composition-based stats.
Identities = 29/100 (29%), Positives = 38/100 (38%), Gaps = 15/100 (15%)
Query: 1830 LINADADINVPDNSGKTALHWXXXXXXXXXXXXLLSHGVNP---------------REGS 1874
L+ AD N D+ G+T LH+ LLS G +P G
Sbjct: 23 LLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGH 82
Query: 1875 YGACKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL 1914
K LL A+ D R P A+E H +IV+LL
Sbjct: 83 KEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLL 122
>pdb|1PXX|A Chain A, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1PXX|B Chain B, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1PXX|C Chain C, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1PXX|D Chain D, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|4FM5|A Chain A, X-Ray Structure Of Des-Methylflurbiprofen Bound To Murine
Cox-2
pdb|4FM5|B Chain B, X-Ray Structure Of Des-Methylflurbiprofen Bound To Murine
Cox-2
pdb|4FM5|C Chain C, X-Ray Structure Of Des-Methylflurbiprofen Bound To Murine
Cox-2
pdb|4FM5|D Chain D, X-Ray Structure Of Des-Methylflurbiprofen Bound To Murine
Cox-2
Length = 604
Score = 40.8 bits (94), Expect = 0.007, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Query: 207 FRCVCMCEPGYTGQNCESKYVPCDPSPCQNGGVCRELDNLNYECEC-QSGYRGKNC 261
FR V +C Q PC +PCQN G C Y+C+C ++G+ G+NC
Sbjct: 3 FRAVLLCAALGLSQAAN----PCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 54
Score = 40.4 bits (93), Expect = 0.010, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 1318 NECASNPCANGGVCVDL-IDGFKCECPR-GYYDARCLS 1353
N C SNPC N G C+ D +KC+C R G+Y C +
Sbjct: 19 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTT 56
Score = 39.7 bits (91), Expect = 0.015, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 37 ANSCDSFPCMNGGTCTLKSLDRYTCTCA-PGFTGSQC 72
AN C S PC N G C D+Y C C GF G C
Sbjct: 18 ANPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 54
Score = 38.9 bits (89), Expect = 0.032, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 1280 NECYSNPCRNGAKCVD-GINRYSCECL-PGYTGLHCET 1315
N C SNPC+N +C+ G ++Y C+C G+ G +C T
Sbjct: 19 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTT 56
Score = 37.7 bits (86), Expect = 0.061, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 78 CASSPCRNGAVCTSLE-DTYECDCA-PGFVGQTCS 110
C S+PC+N C S D Y+CDC GF G+ C+
Sbjct: 21 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCT 55
Score = 37.4 bits (85), Expect = 0.088, Method: Composition-based stats.
Identities = 17/34 (50%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 632 CDSNPCQNGGFCRSKEGGGYRCDCP-PGATGTHC 664
C SNPCQN G C S Y+CDC G G +C
Sbjct: 21 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 54
Score = 35.8 bits (81), Expect = 0.22, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Query: 522 NECLSNPCSSHGTLDCVQL-VNNYHCNC-RPGYMGRHCEVKDLAVKVTSMNASPTLAPLT 579
N C SNPC + G +C+ + Y C+C R G+ G +C + ++ + PT P T
Sbjct: 19 NPCCSNPCQNRG--ECMSTGFDQYKCDCTRTGFYGENCTTPEFLTRIKLL-LKPT--PNT 73
Query: 580 VLWI 583
V +I
Sbjct: 74 VHYI 77
Score = 35.8 bits (81), Expect = 0.27, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 187 NECESHPCQNDGSCLDDP-GTFRCVCMCEPGYTGQNCES 224
N C S+PCQN G C+ ++C C G+ G+NC +
Sbjct: 19 NPCCSNPCQNRGECMSTGFDQYKCDCT-RTGFYGENCTT 56
Score = 34.7 bits (78), Expect = 0.48, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 1091 NECESHPCQNDGSCLDDP-GTFRCVCM-PGFTGTQCET 1126
N C S+PCQN G C+ ++C C GF G C T
Sbjct: 19 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTT 56
Score = 34.3 bits (77), Expect = 0.70, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 1394 DECGSNPCQHGGIC-TDHLNGYTCEC-QIGYTGINC 1427
+ C SNPCQ+ G C + + Y C+C + G+ G NC
Sbjct: 19 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 54
Score = 34.3 bits (77), Expect = 0.75, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 1356 DECASDPCLNGGTC-EDGLNQFICHC-KPGYGGKRC 1389
+ C S+PC N G C G +Q+ C C + G+ G+ C
Sbjct: 19 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 54
Score = 33.9 bits (76), Expect = 0.98, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 987 CASFPCQNGGTCLDEVGD-YSCLCV-DGFSGKHC 1018
C S PCQN G C+ D Y C C GF G++C
Sbjct: 21 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 54
Score = 33.5 bits (75), Expect = 1.2, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 1242 DECASNPCQFGGQCEDL-INGYQCRC-KPGTSGTNC 1275
+ C SNPCQ G+C + Y+C C + G G NC
Sbjct: 19 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 54
Score = 32.7 bits (73), Expect = 2.2, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 1169 CVSSPCHNGGICKDS-IAGYTCECL-AGFTGMSCET 1202
C S+PC N G C + Y C+C GF G +C T
Sbjct: 21 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTT 56
Score = 32.3 bits (72), Expect = 2.5, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 1129 DECASNPCLNGGICNDL-INTFKCACP-IGFTGSHC 1162
+ C SNPC N G C + +KC C GF G +C
Sbjct: 19 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 54
Score = 31.2 bits (69), Expect = 5.4, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 670 NECYSNPCQHAGTCEDRIAD-YACYCLPM-WNGKNC 703
N C SNPCQ+ G C D Y C C + G+NC
Sbjct: 19 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 54
>pdb|3N8W|B Chain B, Crystal Structure Of R120qNATIVE CYCLOOXYGENASE-1
Heterodimer Mutant In Complex With Flurbiprofen
Length = 553
Score = 40.8 bits (94), Expect = 0.008, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 1393 IDECGSNPCQHGGICTDH-LNGYTCEC-QIGYTGINCEI 1429
++ C PCQH GIC L+ Y C+C + GY+G NC I
Sbjct: 2 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTI 40
Score = 39.3 bits (90), Expect = 0.024, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 35 PVANSCDSFPCMNGGTCTLKSLDRYTCTCA-PGFTGSQCELQD 76
PV N C +PC + G C LDRY C C G++G C + +
Sbjct: 1 PV-NPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTIPE 42
Score = 38.9 bits (89), Expect = 0.026, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 228 PCDPSPCQNGGVCRELDNLNYECEC-QSGYRGKNC 261
PC PCQ+ G+C Y+C+C ++GY G NC
Sbjct: 4 PCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNC 38
Score = 35.4 bits (80), Expect = 0.34, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 1279 INECYSNPCRNGAKCVD-GINRYSCECL-PGYTGLHC 1313
+N C PC++ CV G++RY C+C GY+G +C
Sbjct: 2 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNC 38
Score = 34.3 bits (77), Expect = 0.62, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 1317 INECASNPCANGGVCVDL-IDGFKCECPR-GYYDARC 1351
+N C PC + G+CV +D ++C+C R GY C
Sbjct: 2 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNC 38
Score = 33.9 bits (76), Expect = 0.83, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 155 PCEHDGTCVNTP-GSFACNCTQ-GFTGPRC 182
PC+H G CV + C+CT+ G++GP C
Sbjct: 9 PCQHQGICVRFGLDRYQCDCTRTGYSGPNC 38
Score = 33.9 bits (76), Expect = 0.83, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 1059 PCEHDGTCVNTP-GSFACNCTQ-GFTGPRC 1086
PC+H G CV + C+CT+ G++GP C
Sbjct: 9 PCQHQGICVRFGLDRYQCDCTRTGYSGPNC 38
Score = 33.5 bits (75), Expect = 1.1, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 434 IDDCAFKPCRHGGTCIDL-VNAYKCVC-QVPYTGHDC 468
++ C + PC+H G C+ ++ Y+C C + Y+G +C
Sbjct: 2 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNC 38
Score = 33.5 bits (75), Expect = 1.1, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 867 IDDCAFKPCRHGGTCIDL-VNAYKCVC-QVPYTGHDC 901
++ C + PC+H G C+ ++ Y+C C + Y+G +C
Sbjct: 2 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNC 38
Score = 33.1 bits (74), Expect = 1.6, Method: Composition-based stats.
Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 1431 IDDCAFKPCRHGGTCIDL-VNAYKCVCAKAG 1460
++ C + PC+H G C+ ++ Y+C C + G
Sbjct: 2 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTG 32
Score = 32.7 bits (73), Expect = 2.3, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 186 VNECESHPCQNDGSCLDDPGTFRCVCMC-EPGYTGQNC 222
VN C +PCQ+ G C+ G R C C GY+G NC
Sbjct: 2 VNPCCYYPCQHQGICVRF-GLDRYQCDCTRTGYSGPNC 38
>pdb|1CQE|A Chain A, Prostaglandin H2 Synthase-1 Complex With Flurbiprofen
pdb|1CQE|B Chain B, Prostaglandin H2 Synthase-1 Complex With Flurbiprofen
pdb|1EQG|A Chain A, The 2.6 Angstrom Model Of Ovine Cox-1 Complexed With
Ibuprofen
pdb|1EQG|B Chain B, The 2.6 Angstrom Model Of Ovine Cox-1 Complexed With
Ibuprofen
pdb|1EQH|A Chain A, The 2.7 Angstrom Model Of Ovine Cox-1 Complexed With
Flurbiprofen
pdb|1EQH|B Chain B, The 2.7 Angstrom Model Of Ovine Cox-1 Complexed With
Flurbiprofen
Length = 580
Score = 40.8 bits (94), Expect = 0.008, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 1393 IDECGSNPCQHGGICTDH-LNGYTCEC-QIGYTGINCEI 1429
++ C PCQH GIC L+ Y C+C + GY+G NC I
Sbjct: 13 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTI 51
Score = 39.7 bits (91), Expect = 0.018, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 27 FSASLCEIPVANSCDSFPCMNGGTCTLKSLDRYTCTCA-PGFTGSQCELQD 76
FSA N C +PC + G C LDRY C C G++G C + +
Sbjct: 3 FSADPGAPAPVNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTIPE 53
Score = 38.9 bits (89), Expect = 0.027, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 228 PCDPSPCQNGGVCRELDNLNYECEC-QSGYRGKNC 261
PC PCQ+ G+C Y+C+C ++GY G NC
Sbjct: 15 PCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNC 49
Score = 35.4 bits (80), Expect = 0.33, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 864 PINIDDCAFKPCRHGGTCIDL-VNAYKCVC-QVPYTGHDC 901
P ++ C + PC+H G C+ ++ Y+C C + Y+G +C
Sbjct: 10 PAPVNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNC 49
Score = 35.4 bits (80), Expect = 0.34, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 1279 INECYSNPCRNGAKCVD-GINRYSCECL-PGYTGLHC 1313
+N C PC++ CV G++RY C+C GY+G +C
Sbjct: 13 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNC 49
Score = 34.3 bits (77), Expect = 0.63, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 1317 INECASNPCANGGVCVDL-IDGFKCECPR-GYYDARC 1351
+N C PC + G+CV +D ++C+C R GY C
Sbjct: 13 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNC 49
Score = 33.9 bits (76), Expect = 0.83, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 155 PCEHDGTCVNTP-GSFACNCTQ-GFTGPRC 182
PC+H G CV + C+CT+ G++GP C
Sbjct: 20 PCQHQGICVRFGLDRYQCDCTRTGYSGPNC 49
Score = 33.9 bits (76), Expect = 0.83, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 1059 PCEHDGTCVNTP-GSFACNCTQ-GFTGPRC 1086
PC+H G CV + C+CT+ G++GP C
Sbjct: 20 PCQHQGICVRFGLDRYQCDCTRTGYSGPNC 49
Score = 33.5 bits (75), Expect = 1.1, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 434 IDDCAFKPCRHGGTCIDL-VNAYKCVC-QVPYTGHDC 468
++ C + PC+H G C+ ++ Y+C C + Y+G +C
Sbjct: 13 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNC 49
Score = 33.1 bits (74), Expect = 1.5, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 180 PRCETNVNECESHPCQNDGSCLDDPGTFRCVCMC-EPGYTGQNC 222
P VN C +PCQ+ G C+ G R C C GY+G NC
Sbjct: 7 PGAPAPVNPCCYYPCQHQGICVRF-GLDRYQCDCTRTGYSGPNC 49
Score = 33.1 bits (74), Expect = 1.6, Method: Composition-based stats.
Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 1431 IDDCAFKPCRHGGTCIDL-VNAYKCVCAKAG 1460
++ C + PC+H G C+ ++ Y+C C + G
Sbjct: 13 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTG 43
>pdb|1PTH|A Chain A, The Structural Basis Of Aspirin Activity Inferred From The
Crystal Structure Of Inactivated Prostaglandin H2
Synthase
pdb|1PTH|B Chain B, The Structural Basis Of Aspirin Activity Inferred From The
Crystal Structure Of Inactivated Prostaglandin H2
Synthase
Length = 576
Score = 40.8 bits (94), Expect = 0.008, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 1393 IDECGSNPCQHGGICTDH-LNGYTCEC-QIGYTGINCEI 1429
++ C PCQH GIC L+ Y C+C + GY+G NC I
Sbjct: 9 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTI 47
Score = 39.3 bits (90), Expect = 0.025, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 35 PVANSCDSFPCMNGGTCTLKSLDRYTCTCA-PGFTGSQCELQD 76
PV N C +PC + G C LDRY C C G++G C + +
Sbjct: 8 PV-NPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTIPE 49
Score = 38.9 bits (89), Expect = 0.027, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 228 PCDPSPCQNGGVCRELDNLNYECEC-QSGYRGKNC 261
PC PCQ+ G+C Y+C+C ++GY G NC
Sbjct: 11 PCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNC 45
Score = 35.4 bits (80), Expect = 0.33, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 864 PINIDDCAFKPCRHGGTCIDL-VNAYKCVC-QVPYTGHDC 901
P ++ C + PC+H G C+ ++ Y+C C + Y+G +C
Sbjct: 6 PAPVNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNC 45
Score = 35.4 bits (80), Expect = 0.35, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 1279 INECYSNPCRNGAKCVD-GINRYSCECL-PGYTGLHC 1313
+N C PC++ CV G++RY C+C GY+G +C
Sbjct: 9 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNC 45
Score = 34.3 bits (77), Expect = 0.64, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 1317 INECASNPCANGGVCVDL-IDGFKCECPR-GYYDARC 1351
+N C PC + G+CV +D ++C+C R GY C
Sbjct: 9 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNC 45
Score = 33.9 bits (76), Expect = 0.83, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 155 PCEHDGTCVNTP-GSFACNCTQ-GFTGPRC 182
PC+H G CV + C+CT+ G++GP C
Sbjct: 16 PCQHQGICVRFGLDRYQCDCTRTGYSGPNC 45
Score = 33.9 bits (76), Expect = 0.83, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 1059 PCEHDGTCVNTP-GSFACNCTQ-GFTGPRC 1086
PC+H G CV + C+CT+ G++GP C
Sbjct: 16 PCQHQGICVRFGLDRYQCDCTRTGYSGPNC 45
Score = 33.5 bits (75), Expect = 1.1, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 434 IDDCAFKPCRHGGTCIDL-VNAYKCVC-QVPYTGHDC 468
++ C + PC+H G C+ ++ Y+C C + Y+G +C
Sbjct: 9 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNC 45
Score = 33.1 bits (74), Expect = 1.5, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 180 PRCETNVNECESHPCQNDGSCLDDPGTFRCVCMC-EPGYTGQNC 222
P VN C +PCQ+ G C+ G R C C GY+G NC
Sbjct: 3 PGAPAPVNPCCYYPCQHQGICVRF-GLDRYQCDCTRTGYSGPNC 45
Score = 33.1 bits (74), Expect = 1.6, Method: Composition-based stats.
Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 1431 IDDCAFKPCRHGGTCIDL-VNAYKCVCAKAG 1460
++ C + PC+H G C+ ++ Y+C C + G
Sbjct: 9 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTG 39
>pdb|1PGE|A Chain A, Prostaglandin H2 Synthase-1 Complexed With
P-(2'-Iodo-5'-Thenoyl) Hydrotropic Acid (Iodosuprofen)
pdb|1PGE|B Chain B, Prostaglandin H2 Synthase-1 Complexed With
P-(2'-Iodo-5'-Thenoyl) Hydrotropic Acid (Iodosuprofen)
pdb|1PGF|A Chain A, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic Acid
(Iodoindomethacin), Cis Model
pdb|1PGF|B Chain B, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic Acid
(Iodoindomethacin), Cis Model
pdb|1PGG|A Chain A, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic Acid
(Iodoindomethacin), Trans Model
pdb|1PGG|B Chain B, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic Acid
(Iodoindomethacin), Trans Model
pdb|1FE2|A Chain A, Crystal Structure Of Dihomo-Gamma-Linoleic Acid Bound In The
Cyclooxygenase Channel Of Prostaglandin Endoperoxide H
Synthase-1.
pdb|1IGZ|A Chain A, Crystal Structure Of Linoleic Acid Bound In The
Cyclooxygenase Channel Of Prostaglandin Endoperoxide H
Synthase-1.
pdb|1IGX|A Chain A, Crystal Structure Of Eicosapentanoic Acid Bound In The
Cyclooxygenase Channel Of Prostaglandin Endoperoxide H
Synthase-1
Length = 576
Score = 40.8 bits (94), Expect = 0.008, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 1393 IDECGSNPCQHGGICTDH-LNGYTCEC-QIGYTGINCEI 1429
++ C PCQH GIC L+ Y C+C + GY+G NC I
Sbjct: 9 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTI 47
Score = 39.3 bits (90), Expect = 0.025, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 35 PVANSCDSFPCMNGGTCTLKSLDRYTCTCA-PGFTGSQCELQD 76
PV N C +PC + G C LDRY C C G++G C + +
Sbjct: 8 PV-NPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTIPE 49
Score = 38.9 bits (89), Expect = 0.027, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 228 PCDPSPCQNGGVCRELDNLNYECEC-QSGYRGKNC 261
PC PCQ+ G+C Y+C+C ++GY G NC
Sbjct: 11 PCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNC 45
Score = 35.4 bits (80), Expect = 0.33, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 864 PINIDDCAFKPCRHGGTCIDL-VNAYKCVC-QVPYTGHDC 901
P ++ C + PC+H G C+ ++ Y+C C + Y+G +C
Sbjct: 6 PAPVNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNC 45
Score = 35.4 bits (80), Expect = 0.35, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 1279 INECYSNPCRNGAKCVD-GINRYSCECL-PGYTGLHC 1313
+N C PC++ CV G++RY C+C GY+G +C
Sbjct: 9 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNC 45
Score = 34.3 bits (77), Expect = 0.64, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 1317 INECASNPCANGGVCVDL-IDGFKCECPR-GYYDARC 1351
+N C PC + G+CV +D ++C+C R GY C
Sbjct: 9 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNC 45
Score = 33.9 bits (76), Expect = 0.83, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 155 PCEHDGTCVNTP-GSFACNCTQ-GFTGPRC 182
PC+H G CV + C+CT+ G++GP C
Sbjct: 16 PCQHQGICVRFGLDRYQCDCTRTGYSGPNC 45
Score = 33.9 bits (76), Expect = 0.83, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 1059 PCEHDGTCVNTP-GSFACNCTQ-GFTGPRC 1086
PC+H G CV + C+CT+ G++GP C
Sbjct: 16 PCQHQGICVRFGLDRYQCDCTRTGYSGPNC 45
Score = 33.5 bits (75), Expect = 1.1, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 434 IDDCAFKPCRHGGTCIDL-VNAYKCVC-QVPYTGHDC 468
++ C + PC+H G C+ ++ Y+C C + Y+G +C
Sbjct: 9 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNC 45
Score = 33.1 bits (74), Expect = 1.5, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 180 PRCETNVNECESHPCQNDGSCLDDPGTFRCVCMC-EPGYTGQNC 222
P VN C +PCQ+ G C+ G R C C GY+G NC
Sbjct: 3 PGAPAPVNPCCYYPCQHQGICVRF-GLDRYQCDCTRTGYSGPNC 45
Score = 33.1 bits (74), Expect = 1.6, Method: Composition-based stats.
Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 1431 IDDCAFKPCRHGGTCIDL-VNAYKCVCAKAG 1460
++ C + PC+H G C+ ++ Y+C C + G
Sbjct: 9 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTG 39
>pdb|1TPG|A Chain A, F1-G Module Pair Residues 1-91 (C83s) Of Tissue-Type
Plasminogen Activator (T-Pa) (Nmr, 298k, Ph2.95,
Representative Structure)
Length = 91
Score = 40.4 bits (93), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 1355 VDECASDPCLNGGTCEDGL--NQFICHCKPGYGGKRCEFD 1392
V C+ C NGGTC+ L + F+C C G+ GK CE D
Sbjct: 48 VKSCSEPRCFNGGTCQQALYFSDFVCQCPEGFAGKSCEID 87
Score = 35.8 bits (81), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 982 INTDDCASFPCQNGGTCLDEV--GDYSCLCVDGFSGKHCEVD 1021
+ C+ C NGGTC + D+ C C +GF+GK CE+D
Sbjct: 46 VPVKSCSEPRCFNGGTCQQALYFSDFVCQCPEGFAGKSCEID 87
Score = 33.9 bits (76), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 1128 IDECASNPCLNGGICNDLI--NTFKCACPIGFTGSHCQIN 1165
+ C+ C NGG C + + F C CP GF G C+I+
Sbjct: 48 VKSCSEPRCFNGGTCQQALYFSDFVCQCPEGFAGKSCEID 87
Score = 32.7 bits (73), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 1164 INIDDCVSSPCHNGGICKDSI--AGYTCECLAGFTGMSCETNIN 1205
+ + C C NGG C+ ++ + + C+C GF G SCE +
Sbjct: 46 VPVKSCSEPRCFNGGTCQQALYFSDFVCQCPEGFAGKSCEIDTR 89
Score = 30.8 bits (68), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 34 IPVANSCDSFPCMNGGTCTLK-SLDRYTCTCAPGFTGSQCEL 74
+PV SC C NGGTC + C C GF G CE+
Sbjct: 46 VPV-KSCSEPRCFNGGTCQQALYFSDFVCQCPEGFAGKSCEI 86
>pdb|2BO2|A Chain A, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Calcium.
pdb|2BO2|B Chain B, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Calcium.
pdb|2BOU|A Chain A, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Barium.
pdb|2BOX|A Chain A, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Strontium
Length = 143
Score = 40.4 bits (93), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 42/90 (46%), Gaps = 15/90 (16%)
Query: 943 EDVDECQLSSP--CRNGATCHNTNGSYLCECAKGYE---GRDCLIN--------TDDCAS 989
+D++EC S C + C NT GSY C C+ GYE G N D+C+S
Sbjct: 42 DDINECATLSKVSCGKFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQDVDECSS 101
Query: 990 --FPCQNGGTCLDEVGDYSCLCVDGFSGKH 1017
C + C + VG YSC C G+ +H
Sbjct: 102 GQHQCDSSTVCFNTVGSYSCRCRPGWKPRH 131
Score = 35.8 bits (81), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 58/128 (45%), Gaps = 31/128 (24%)
Query: 1060 CEHDGTCVNTPGSFACNCTQGF-------TGPRCET--NVNECESHP---CQNDGSCLDD 1107
C D +CVN + AC C GF T P ET ++NEC + C C +
Sbjct: 9 CPQDSSCVN---ATACRCNPGFSSFSEIITTPM-ETCDDINECATLSKVSCGKFSDCWNT 64
Query: 1108 PGTFRCVCMPGF------------TGTQCETDIDECAS--NPCLNGGICNDLINTFKCAC 1153
G++ CVC PG+ + C+ D+DEC+S + C + +C + + ++ C C
Sbjct: 65 EGSYDCVCSPGYEPVSGAKTFKNESENTCQ-DVDECSSGQHQCDSSTVCFNTVGSYSCRC 123
Query: 1154 PIGFTGSH 1161
G+ H
Sbjct: 124 RPGWKPRH 131
Score = 35.4 bits (80), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 20/34 (58%)
Query: 301 QDVDECSIRPSVCHNGATCTNSVGGFSCICVNGW 334
QDVDECS C + C N+VG +SC C GW
Sbjct: 94 QDVDECSSGQHQCDSSTVCFNTVGSYSCRCRPGW 127
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 52/111 (46%), Gaps = 25/111 (22%)
Query: 1184 IAGYTCECLAGFTGMS------CET--NINDCAS---NPCHR-GECIDGENSFTCACHPG 1231
+ C C GF+ S ET +IN+CA+ C + +C + E S+ C C PG
Sbjct: 16 VNATACRCNPGFSSFSEIITTPMETCDDINECATLSKVSCGKFSDCWNTEGSYDCVCSPG 75
Query: 1232 F---TGALC------NT--QLDECAS--NPCQFGGQCEDLINGYQCRCKPG 1269
+ +GA NT +DEC+S + C C + + Y CRC+PG
Sbjct: 76 YEPVSGAKTFKNESENTCQDVDECSSGQHQCDSSTVCFNTVGSYSCRCRPG 126
Score = 32.3 bits (72), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 14/84 (16%)
Query: 302 DVDECSIRPSV-CHNGATCTNSVGGFSCICVNGW---TGPDCSLN--------IDDCAGA 349
D++EC+ V C + C N+ G + C+C G+ +G N +D+C+
Sbjct: 43 DINECATLSKVSCGKFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQDVDECSSG 102
Query: 350 A--CFNGATCIDRVGSFYCQCTPG 371
C + C + VGS+ C+C PG
Sbjct: 103 QHQCDSSTVCFNTVGSYSCRCRPG 126
Score = 32.0 bits (71), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 520 DINECLSNPCSSHGTLDCVQLVNNYHCNCRPGYMGRH 556
D++EC S + C V +Y C CRPG+ RH
Sbjct: 95 DVDECSSGQHQCDSSTVCFNTVGSYSCRCRPGWKPRH 131
Score = 32.0 bits (71), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 45/115 (39%), Gaps = 24/115 (20%)
Query: 1222 NSFTCACHPGFTG--ALCNTQLDEC---------ASNPCQFGGQCEDLINGYQCRCKPG- 1269
N+ C C+PGF+ + T ++ C + C C + Y C C PG
Sbjct: 17 NATACRCNPGFSSFSEIITTPMETCDDINECATLSKVSCGKFSDCWNTEGSYDCVCSPGY 76
Query: 1270 --TSGTNCEIN--------INECYS--NPCRNGAKCVDGINRYSCECLPGYTGLH 1312
SG N ++EC S + C + C + + YSC C PG+ H
Sbjct: 77 EPVSGAKTFKNESENTCQDVDECSSGQHQCDSSTVCFNTVGSYSCRCRPGWKPRH 131
Score = 30.8 bits (68), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 47/112 (41%), Gaps = 24/112 (21%)
Query: 1259 INGYQCRCKPGTSGTNCEI--------NINECYS---NPCRNGAKCVDGINRYSCECLPG 1307
+N CRC PG S + I +INEC + C + C + Y C C PG
Sbjct: 16 VNATACRCNPGFSSFSEIITTPMETCDDINECATLSKVSCGKFSDCWNTEGSYDCVCSPG 75
Query: 1308 Y---TGLHCETN--------INECAS--NPCANGGVCVDLIDGFKCECPRGY 1346
Y +G N ++EC+S + C + VC + + + C C G+
Sbjct: 76 YEPVSGAKTFKNESENTCQDVDECSSGQHQCDSSTVCFNTVGSYSCRCRPGW 127
Score = 30.4 bits (67), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 45/112 (40%), Gaps = 24/112 (21%)
Query: 1297 INRYSCECLPGYTGLH------CET--NINECAS---NPCANGGVCVDLIDGFKCECPRG 1345
+N +C C PG++ ET +INECA+ C C + + C C G
Sbjct: 16 VNATACRCNPGFSSFSEIITTPMETCDDINECATLSKVSCGKFSDCWNTEGSYDCVCSPG 75
Query: 1346 YY-----------DARCLSDVDECAS--DPCLNGGTCEDGLNQFICHCKPGY 1384
Y DVDEC+S C + C + + + C C+PG+
Sbjct: 76 YEPVSGAKTFKNESENTCQDVDECSSGQHQCDSSTVCFNTVGSYSCRCRPGW 127
>pdb|3PGH|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With A
Non- Selective Inhibitor, Flurbiprofen
pdb|3PGH|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With A
Non- Selective Inhibitor, Flurbiprofen
pdb|3PGH|C Chain C, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With A
Non- Selective Inhibitor, Flurbiprofen
pdb|3PGH|D Chain D, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With A
Non- Selective Inhibitor, Flurbiprofen
pdb|4COX|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With A
Non- Selective Inhibitor, Indomethacin
pdb|4COX|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With A
Non- Selective Inhibitor, Indomethacin
pdb|4COX|C Chain C, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With A
Non- Selective Inhibitor, Indomethacin
pdb|4COX|D Chain D, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With A
Non- Selective Inhibitor, Indomethacin
pdb|5COX|A Chain A, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|5COX|B Chain B, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|5COX|C Chain C, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|5COX|D Chain D, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|6COX|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With A
Selective Inhibitor, Sc-558 In I222 Space Group
pdb|6COX|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With A
Selective Inhibitor, Sc-558 In I222 Space Group
pdb|1CX2|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With A
Selective Inhibitor, Sc-558
pdb|1CX2|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With A
Selective Inhibitor, Sc-558
pdb|1CX2|C Chain C, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With A
Selective Inhibitor, Sc-558
pdb|1CX2|D Chain D, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With A
Selective Inhibitor, Sc-558
Length = 587
Score = 40.4 bits (93), Expect = 0.010, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 1318 NECASNPCANGGVCVDL-IDGFKCECPR-GYYDARCLS 1353
N C SNPC N G C+ D +KC+C R G+Y C +
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTT 39
Score = 39.7 bits (91), Expect = 0.015, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 37 ANSCDSFPCMNGGTCTLKSLDRYTCTCA-PGFTGSQC 72
AN C S PC N G C D+Y C C GF G C
Sbjct: 1 ANPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 37
Score = 39.3 bits (90), Expect = 0.021, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 228 PCDPSPCQNGGVCRELDNLNYECEC-QSGYRGKNC 261
PC +PCQN G C Y+C+C ++G+ G+NC
Sbjct: 3 PCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 37
Score = 38.9 bits (89), Expect = 0.032, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 1280 NECYSNPCRNGAKCVD-GINRYSCECL-PGYTGLHCET 1315
N C SNPC+N +C+ G ++Y C+C G+ G +C T
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTT 39
Score = 37.7 bits (86), Expect = 0.061, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 78 CASSPCRNGAVCTSLE-DTYECDCA-PGFVGQTCS 110
C S+PC+N C S D Y+CDC GF G+ C+
Sbjct: 4 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCT 38
Score = 37.4 bits (85), Expect = 0.089, Method: Composition-based stats.
Identities = 17/34 (50%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 632 CDSNPCQNGGFCRSKEGGGYRCDCP-PGATGTHC 664
C SNPCQN G C S Y+CDC G G +C
Sbjct: 4 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 37
Score = 35.8 bits (81), Expect = 0.22, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Query: 522 NECLSNPCSSHGTLDCVQL-VNNYHCNC-RPGYMGRHCEVKDLAVKVTSMNASPTLAPLT 579
N C SNPC + G +C+ + Y C+C R G+ G +C + ++ + PT P T
Sbjct: 2 NPCCSNPCQNRG--ECMSTGFDQYKCDCTRTGFYGENCTTPEFLTRIKLL-LKPT--PNT 56
Query: 580 VLWI 583
V +I
Sbjct: 57 VHYI 60
Score = 35.8 bits (81), Expect = 0.27, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 187 NECESHPCQNDGSCLDDP-GTFRCVCMCEPGYTGQNCES 224
N C S+PCQN G C+ ++C C G+ G+NC +
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQYKCDCT-RTGFYGENCTT 39
Score = 34.7 bits (78), Expect = 0.48, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 1091 NECESHPCQNDGSCLDDP-GTFRCVCM-PGFTGTQCET 1126
N C S+PCQN G C+ ++C C GF G C T
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTT 39
Score = 34.3 bits (77), Expect = 0.69, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 1394 DECGSNPCQHGGIC-TDHLNGYTCEC-QIGYTGINC 1427
+ C SNPCQ+ G C + + Y C+C + G+ G NC
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 37
Score = 34.3 bits (77), Expect = 0.75, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 1356 DECASDPCLNGGTC-EDGLNQFICHC-KPGYGGKRC 1389
+ C S+PC N G C G +Q+ C C + G+ G+ C
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 37
Score = 33.9 bits (76), Expect = 0.98, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 987 CASFPCQNGGTCLDEVGD-YSCLCV-DGFSGKHC 1018
C S PCQN G C+ D Y C C GF G++C
Sbjct: 4 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 37
Score = 33.5 bits (75), Expect = 1.2, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 1242 DECASNPCQFGGQCEDL-INGYQCRC-KPGTSGTNC 1275
+ C SNPCQ G+C + Y+C C + G G NC
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 37
Score = 32.7 bits (73), Expect = 2.2, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 1169 CVSSPCHNGGICKDS-IAGYTCECL-AGFTGMSCET 1202
C S+PC N G C + Y C+C GF G +C T
Sbjct: 4 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTT 39
Score = 32.3 bits (72), Expect = 2.4, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 1129 DECASNPCLNGGICNDL-INTFKCACP-IGFTGSHC 1162
+ C SNPC N G C + +KC C GF G +C
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 37
Score = 31.2 bits (69), Expect = 5.4, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 670 NECYSNPCQHAGTCEDRIAD-YACYCLPM-WNGKNC 703
N C SNPCQ+ G C D Y C C + G+NC
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 37
>pdb|3NT1|A Chain A, High Resolution Structure Of Naproxen:cox-2 Complex.
pdb|3NT1|B Chain B, High Resolution Structure Of Naproxen:cox-2 Complex.
pdb|3NTB|A Chain A, Structure Of 6-Methylthio Naproxen Analog Bound To Mcox-2.
pdb|3NTB|B Chain B, Structure Of 6-Methylthio Naproxen Analog Bound To Mcox-2.
pdb|3NTB|C Chain C, Structure Of 6-Methylthio Naproxen Analog Bound To Mcox-2.
pdb|3NTB|D Chain D, Structure Of 6-Methylthio Naproxen Analog Bound To Mcox-2.
pdb|3LN0|A Chain A, Structure Of Compound 5c-S Bound At The Active Site Of Cox-2
pdb|3LN0|B Chain B, Structure Of Compound 5c-S Bound At The Active Site Of Cox-2
pdb|3LN0|C Chain C, Structure Of Compound 5c-S Bound At The Active Site Of Cox-2
pdb|3LN0|D Chain D, Structure Of Compound 5c-S Bound At The Active Site Of Cox-2
pdb|3LN1|A Chain A, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3LN1|B Chain B, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3LN1|C Chain C, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3LN1|D Chain D, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3MQE|A Chain A, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3MQE|B Chain B, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3MQE|C Chain C, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3MQE|D Chain D, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3Q7D|A Chain A, Structure Of (R)-Naproxen Bound To Mcox-2.
pdb|3Q7D|B Chain B, Structure Of (R)-Naproxen Bound To Mcox-2
Length = 587
Score = 40.4 bits (93), Expect = 0.010, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 1318 NECASNPCANGGVCVDL-IDGFKCECPR-GYYDARCLS 1353
N C SNPC N G C+ D +KC+C R G+Y C +
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTT 39
Score = 39.7 bits (91), Expect = 0.015, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 37 ANSCDSFPCMNGGTCTLKSLDRYTCTCA-PGFTGSQC 72
AN C S PC N G C D+Y C C GF G C
Sbjct: 1 ANPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 37
Score = 39.3 bits (90), Expect = 0.021, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 228 PCDPSPCQNGGVCRELDNLNYECEC-QSGYRGKNC 261
PC +PCQN G C Y+C+C ++G+ G+NC
Sbjct: 3 PCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 37
Score = 38.9 bits (89), Expect = 0.032, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 1280 NECYSNPCRNGAKCVD-GINRYSCECL-PGYTGLHCET 1315
N C SNPC+N +C+ G ++Y C+C G+ G +C T
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTT 39
Score = 37.7 bits (86), Expect = 0.061, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 78 CASSPCRNGAVCTSLE-DTYECDCA-PGFVGQTCS 110
C S+PC+N C S D Y+CDC GF G+ C+
Sbjct: 4 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCT 38
Score = 37.4 bits (85), Expect = 0.088, Method: Composition-based stats.
Identities = 17/34 (50%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 632 CDSNPCQNGGFCRSKEGGGYRCDCP-PGATGTHC 664
C SNPCQN G C S Y+CDC G G +C
Sbjct: 4 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 37
Score = 35.8 bits (81), Expect = 0.22, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Query: 522 NECLSNPCSSHGTLDCVQL-VNNYHCNC-RPGYMGRHCEVKDLAVKVTSMNASPTLAPLT 579
N C SNPC + G +C+ + Y C+C R G+ G +C + ++ + PT P T
Sbjct: 2 NPCCSNPCQNRG--ECMSTGFDQYKCDCTRTGFYGENCTTPEFLTRIKLL-LKPT--PNT 56
Query: 580 VLWI 583
V +I
Sbjct: 57 VHYI 60
Score = 35.8 bits (81), Expect = 0.27, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 187 NECESHPCQNDGSCLDDP-GTFRCVCMCEPGYTGQNCES 224
N C S+PCQN G C+ ++C C G+ G+NC +
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQYKCDCT-RTGFYGENCTT 39
Score = 34.7 bits (78), Expect = 0.48, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 1091 NECESHPCQNDGSCLDDP-GTFRCVCM-PGFTGTQCET 1126
N C S+PCQN G C+ ++C C GF G C T
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTT 39
Score = 34.3 bits (77), Expect = 0.70, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 1394 DECGSNPCQHGGIC-TDHLNGYTCEC-QIGYTGINC 1427
+ C SNPCQ+ G C + + Y C+C + G+ G NC
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 37
Score = 34.3 bits (77), Expect = 0.75, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 1356 DECASDPCLNGGTC-EDGLNQFICHC-KPGYGGKRC 1389
+ C S+PC N G C G +Q+ C C + G+ G+ C
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 37
Score = 33.9 bits (76), Expect = 0.98, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 987 CASFPCQNGGTCLDEVGD-YSCLCV-DGFSGKHC 1018
C S PCQN G C+ D Y C C GF G++C
Sbjct: 4 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 37
Score = 33.5 bits (75), Expect = 1.2, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 1242 DECASNPCQFGGQCEDL-INGYQCRC-KPGTSGTNC 1275
+ C SNPCQ G+C + Y+C C + G G NC
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 37
Score = 32.7 bits (73), Expect = 2.2, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 1169 CVSSPCHNGGICKDS-IAGYTCECL-AGFTGMSCET 1202
C S+PC N G C + Y C+C GF G +C T
Sbjct: 4 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTT 39
Score = 32.3 bits (72), Expect = 2.5, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 1129 DECASNPCLNGGICNDL-INTFKCACP-IGFTGSHC 1162
+ C SNPC N G C + +KC C GF G +C
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 37
Score = 31.2 bits (69), Expect = 5.4, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 670 NECYSNPCQHAGTCEDRIAD-YACYCLPM-WNGKNC 703
N C SNPCQ+ G C D Y C C + G+NC
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 37
>pdb|1CVU|A Chain A, Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1CVU|B Chain B, Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Active Site Of Cox-2
Length = 552
Score = 40.0 bits (92), Expect = 0.011, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 1318 NECASNPCANGGVCVDL-IDGFKCECPR-GYYDARCLS 1353
N C SNPC N G C+ D +KC+C R G+Y C +
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTT 39
Score = 39.7 bits (91), Expect = 0.016, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 37 ANSCDSFPCMNGGTCTLKSLDRYTCTCA-PGFTGSQC 72
AN C S PC N G C D+Y C C GF G C
Sbjct: 1 ANPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 37
Score = 39.3 bits (90), Expect = 0.023, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 228 PCDPSPCQNGGVCRELDNLNYECEC-QSGYRGKNC 261
PC +PCQN G C Y+C+C ++G+ G+NC
Sbjct: 3 PCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 37
Score = 38.5 bits (88), Expect = 0.035, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 1280 NECYSNPCRNGAKCVD-GINRYSCECL-PGYTGLHCET 1315
N C SNPC+N +C+ G ++Y C+C G+ G +C T
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTT 39
Score = 37.7 bits (86), Expect = 0.065, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 78 CASSPCRNGAVCTSLE-DTYECDCA-PGFVGQTCS 110
C S+PC+N C S D Y+CDC GF G+ C+
Sbjct: 4 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCT 38
Score = 37.0 bits (84), Expect = 0.096, Method: Composition-based stats.
Identities = 17/34 (50%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 632 CDSNPCQNGGFCRSKEGGGYRCDCP-PGATGTHC 664
C SNPCQN G C S Y+CDC G G +C
Sbjct: 4 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 37
Score = 35.8 bits (81), Expect = 0.24, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Query: 522 NECLSNPCSSHGTLDCVQL-VNNYHCNC-RPGYMGRHCEVKDLAVKVTSMNASPTLAPLT 579
N C SNPC + G +C+ + Y C+C R G+ G +C + ++ + PT P T
Sbjct: 2 NPCCSNPCQNRG--ECMSTGFDQYKCDCTRTGFYGENCTTPEFLTRIKLL-LKPT--PNT 56
Query: 580 VLWI 583
V +I
Sbjct: 57 VHYI 60
Score = 35.4 bits (80), Expect = 0.29, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 187 NECESHPCQNDGSCLDDP-GTFRCVCMCEPGYTGQNCES 224
N C S+PCQN G C+ ++C C G+ G+NC +
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQYKCDCT-RTGFYGENCTT 39
Score = 34.7 bits (78), Expect = 0.52, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 1091 NECESHPCQNDGSCLDDP-GTFRCVCM-PGFTGTQCET 1126
N C S+PCQN G C+ ++C C GF G C T
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTT 39
Score = 34.3 bits (77), Expect = 0.76, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 1394 DECGSNPCQHGGIC-TDHLNGYTCEC-QIGYTGINC 1427
+ C SNPCQ+ G C + + Y C+C + G+ G NC
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 37
Score = 33.9 bits (76), Expect = 0.82, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 1356 DECASDPCLNGGTC-EDGLNQFICHC-KPGYGGKRC 1389
+ C S+PC N G C G +Q+ C C + G+ G+ C
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 37
Score = 33.5 bits (75), Expect = 1.1, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 987 CASFPCQNGGTCLDEVGD-YSCLCV-DGFSGKHC 1018
C S PCQN G C+ D Y C C GF G++C
Sbjct: 4 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 37
Score = 33.5 bits (75), Expect = 1.3, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 1242 DECASNPCQFGGQCEDL-INGYQCRC-KPGTSGTNC 1275
+ C SNPCQ G+C + Y+C C + G G NC
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 37
Score = 32.3 bits (72), Expect = 2.4, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 1169 CVSSPCHNGGICKDS-IAGYTCECL-AGFTGMSCET 1202
C S+PC N G C + Y C+C GF G +C T
Sbjct: 4 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTT 39
Score = 32.3 bits (72), Expect = 2.7, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 1129 DECASNPCLNGGICNDL-INTFKCACP-IGFTGSHC 1162
+ C SNPC N G C + +KC C GF G +C
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 37
Score = 31.2 bits (69), Expect = 5.7, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 670 NECYSNPCQHAGTCEDRIAD-YACYCLPM-WNGKNC 703
N C SNPCQ+ G C D Y C C + G+NC
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 37
>pdb|1DDX|A Chain A, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site Of
Cox-2: Prostaglandin Structure
pdb|1DDX|B Chain B, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site Of
Cox-2: Prostaglandin Structure
pdb|1DDX|C Chain C, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site Of
Cox-2: Prostaglandin Structure
pdb|1DDX|D Chain D, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site Of
Cox-2: Prostaglandin Structure
pdb|3NTG|A Chain A, Crystal Structure Of Cox-2 With Selective Compound 23d-(R)
pdb|3NTG|B Chain B, Crystal Structure Of Cox-2 With Selective Compound 23d-(R)
pdb|3NTG|C Chain C, Crystal Structure Of Cox-2 With Selective Compound 23d-(R)
pdb|3NTG|D Chain D, Crystal Structure Of Cox-2 With Selective Compound 23d-(R)
Length = 552
Score = 40.0 bits (92), Expect = 0.012, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 1318 NECASNPCANGGVCVDL-IDGFKCECPR-GYYDARCLS 1353
N C SNPC N G C+ D +KC+C R G+Y C +
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTT 39
Score = 39.7 bits (91), Expect = 0.017, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 37 ANSCDSFPCMNGGTCTLKSLDRYTCTCA-PGFTGSQC 72
AN C S PC N G C D+Y C C GF G C
Sbjct: 1 ANPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 37
Score = 39.3 bits (90), Expect = 0.024, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 228 PCDPSPCQNGGVCRELDNLNYECEC-QSGYRGKNC 261
PC +PCQN G C Y+C+C ++G+ G+NC
Sbjct: 3 PCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 37
Score = 38.5 bits (88), Expect = 0.036, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 1280 NECYSNPCRNGAKCVD-GINRYSCECL-PGYTGLHCET 1315
N C SNPC+N +C+ G ++Y C+C G+ G +C T
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTT 39
Score = 37.7 bits (86), Expect = 0.067, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 78 CASSPCRNGAVCTSLE-DTYECDCA-PGFVGQTCS 110
C S+PC+N C S D Y+CDC GF G+ C+
Sbjct: 4 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCT 38
Score = 37.0 bits (84), Expect = 0.097, Method: Composition-based stats.
Identities = 17/34 (50%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 632 CDSNPCQNGGFCRSKEGGGYRCDCP-PGATGTHC 664
C SNPCQN G C S Y+CDC G G +C
Sbjct: 4 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 37
Score = 35.8 bits (81), Expect = 0.25, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Query: 522 NECLSNPCSSHGTLDCVQL-VNNYHCNC-RPGYMGRHCEVKDLAVKVTSMNASPTLAPLT 579
N C SNPC + G +C+ + Y C+C R G+ G +C + ++ + PT P T
Sbjct: 2 NPCCSNPCQNRG--ECMSTGFDQYKCDCTRTGFYGENCTTPEFLTRIKLL-LKPT--PNT 56
Query: 580 VLWI 583
V +I
Sbjct: 57 VHYI 60
Score = 35.4 bits (80), Expect = 0.29, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 187 NECESHPCQNDGSCLDDP-GTFRCVCMCEPGYTGQNCES 224
N C S+PCQN G C+ ++C C G+ G+NC +
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQYKCDCT-RTGFYGENCTT 39
Score = 34.7 bits (78), Expect = 0.52, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 1091 NECESHPCQNDGSCLDDP-GTFRCVCM-PGFTGTQCET 1126
N C S+PCQN G C+ ++C C GF G C T
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTT 39
Score = 34.3 bits (77), Expect = 0.77, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 1394 DECGSNPCQHGGIC-TDHLNGYTCEC-QIGYTGINC 1427
+ C SNPCQ+ G C + + Y C+C + G+ G NC
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 37
Score = 33.9 bits (76), Expect = 0.82, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 1356 DECASDPCLNGGTC-EDGLNQFICHC-KPGYGGKRC 1389
+ C S+PC N G C G +Q+ C C + G+ G+ C
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 37
Score = 33.5 bits (75), Expect = 1.1, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 987 CASFPCQNGGTCLDEVGD-YSCLCV-DGFSGKHC 1018
C S PCQN G C+ D Y C C GF G++C
Sbjct: 4 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 37
Score = 33.5 bits (75), Expect = 1.4, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 1242 DECASNPCQFGGQCEDL-INGYQCRC-KPGTSGTNC 1275
+ C SNPCQ G+C + Y+C C + G G NC
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 37
Score = 32.3 bits (72), Expect = 2.4, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 1169 CVSSPCHNGGICKDS-IAGYTCECL-AGFTGMSCET 1202
C S+PC N G C + Y C+C GF G +C T
Sbjct: 4 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTT 39
Score = 32.3 bits (72), Expect = 2.7, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 1129 DECASNPCLNGGICNDL-INTFKCACP-IGFTGSHC 1162
+ C SNPC N G C + +KC C GF G +C
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 37
Score = 31.2 bits (69), Expect = 5.7, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 670 NECYSNPCQHAGTCEDRIAD-YACYCLPM-WNGKNC 703
N C SNPCQ+ G C D Y C C + G+NC
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 37
>pdb|3RR3|A Chain A, Structure Of (R)-Flurbiprofen Bound To Mcox-2
pdb|3RR3|B Chain B, Structure Of (R)-Flurbiprofen Bound To Mcox-2
pdb|3RR3|C Chain C, Structure Of (R)-Flurbiprofen Bound To Mcox-2
pdb|3RR3|D Chain D, Structure Of (R)-Flurbiprofen Bound To Mcox-2
Length = 560
Score = 40.0 bits (92), Expect = 0.012, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 1318 NECASNPCANGGVCVDL-IDGFKCECPR-GYYDARCLS 1353
N C SNPC N G C+ D +KC+C R G+Y C +
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTT 39
Score = 39.7 bits (91), Expect = 0.017, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 37 ANSCDSFPCMNGGTCTLKSLDRYTCTCA-PGFTGSQC 72
AN C S PC N G C D+Y C C GF G C
Sbjct: 1 ANPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 37
Score = 39.3 bits (90), Expect = 0.024, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 228 PCDPSPCQNGGVCRELDNLNYECEC-QSGYRGKNC 261
PC +PCQN G C Y+C+C ++G+ G+NC
Sbjct: 3 PCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 37
Score = 38.5 bits (88), Expect = 0.036, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 1280 NECYSNPCRNGAKCVD-GINRYSCECL-PGYTGLHCET 1315
N C SNPC+N +C+ G ++Y C+C G+ G +C T
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTT 39
Score = 37.7 bits (86), Expect = 0.068, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 78 CASSPCRNGAVCTSLE-DTYECDCA-PGFVGQTCS 110
C S+PC+N C S D Y+CDC GF G+ C+
Sbjct: 4 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCT 38
Score = 37.0 bits (84), Expect = 0.098, Method: Composition-based stats.
Identities = 17/34 (50%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 632 CDSNPCQNGGFCRSKEGGGYRCDCP-PGATGTHC 664
C SNPCQN G C S Y+CDC G G +C
Sbjct: 4 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 37
Score = 35.8 bits (81), Expect = 0.25, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Query: 522 NECLSNPCSSHGTLDCVQL-VNNYHCNC-RPGYMGRHCEVKDLAVKVTSMNASPTLAPLT 579
N C SNPC + G +C+ + Y C+C R G+ G +C + ++ + PT P T
Sbjct: 2 NPCCSNPCQNRG--ECMSTGFDQYKCDCTRTGFYGENCTTPEFLTRIKLL-LKPT--PNT 56
Query: 580 VLWI 583
V +I
Sbjct: 57 VHYI 60
Score = 35.4 bits (80), Expect = 0.30, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 187 NECESHPCQNDGSCLDDP-GTFRCVCMCEPGYTGQNCES 224
N C S+PCQN G C+ ++C C G+ G+NC +
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQYKCDCT-RTGFYGENCTT 39
Score = 34.7 bits (78), Expect = 0.52, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 1091 NECESHPCQNDGSCLDDP-GTFRCVCM-PGFTGTQCET 1126
N C S+PCQN G C+ ++C C GF G C T
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTT 39
Score = 34.3 bits (77), Expect = 0.78, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 1394 DECGSNPCQHGGIC-TDHLNGYTCEC-QIGYTGINC 1427
+ C SNPCQ+ G C + + Y C+C + G+ G NC
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 37
Score = 33.9 bits (76), Expect = 0.83, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 1356 DECASDPCLNGGTC-EDGLNQFICHC-KPGYGGKRC 1389
+ C S+PC N G C G +Q+ C C + G+ G+ C
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 37
Score = 33.5 bits (75), Expect = 1.1, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 987 CASFPCQNGGTCLDEVGD-YSCLCV-DGFSGKHC 1018
C S PCQN G C+ D Y C C GF G++C
Sbjct: 4 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 37
Score = 33.1 bits (74), Expect = 1.4, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 1242 DECASNPCQFGGQCEDL-INGYQCRC-KPGTSGTNC 1275
+ C SNPCQ G+C + Y+C C + G G NC
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 37
Score = 32.3 bits (72), Expect = 2.4, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 1169 CVSSPCHNGGICKDS-IAGYTCECL-AGFTGMSCET 1202
C S+PC N G C + Y C+C GF G +C T
Sbjct: 4 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTT 39
Score = 32.3 bits (72), Expect = 2.7, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 1129 DECASNPCLNGGICNDL-INTFKCACP-IGFTGSHC 1162
+ C SNPC N G C + +KC C GF G +C
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 37
Score = 31.2 bits (69), Expect = 5.8, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 670 NECYSNPCQHAGTCEDRIAD-YACYCLPM-WNGKNC 703
N C SNPCQ+ G C D Y C C + G+NC
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 37
>pdb|3TZI|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of G533v Murine Cox-2
pdb|3TZI|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of G533v Murine Cox-2
Length = 593
Score = 39.3 bits (90), Expect = 0.021, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 228 PCDPSPCQNGGVCRELDNLNYECEC-QSGYRGKNC 261
PC +PCQN G C Y+C+C ++G+ G+NC
Sbjct: 9 PCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 43
Score = 38.5 bits (88), Expect = 0.038, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 1320 CASNPCANGGVCVDL-IDGFKCECPR-GYYDARCLS 1353
C SNPC N G C+ D +KC+C R G+Y C +
Sbjct: 10 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTT 45
Score = 37.7 bits (86), Expect = 0.061, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 78 CASSPCRNGAVCTSLE-DTYECDCA-PGFVGQTCS 110
C S+PC+N C S D Y+CDC GF G+ C+
Sbjct: 10 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCT 44
Score = 37.4 bits (85), Expect = 0.088, Method: Composition-based stats.
Identities = 17/34 (50%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 632 CDSNPCQNGGFCRSKEGGGYRCDCP-PGATGTHC 664
C SNPCQN G C S Y+CDC G G +C
Sbjct: 10 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 43
Score = 37.0 bits (84), Expect = 0.12, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 1282 CYSNPCRNGAKCVD-GINRYSCECL-PGYTGLHCET 1315
C SNPC+N +C+ G ++Y C+C G+ G +C T
Sbjct: 10 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTT 45
Score = 36.2 bits (82), Expect = 0.19, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 40 CDSFPCMNGGTCTLKSLDRYTCTCA-PGFTGSQC 72
C S PC N G C D+Y C C GF G C
Sbjct: 10 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 43
Score = 34.3 bits (77), Expect = 0.72, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 1396 CGSNPCQHGGIC-TDHLNGYTCEC-QIGYTGINC 1427
C SNPCQ+ G C + + Y C+C + G+ G NC
Sbjct: 10 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 43
Score = 34.3 bits (77), Expect = 0.77, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 1358 CASDPCLNGGTC-EDGLNQFICHC-KPGYGGKRC 1389
C S+PC N G C G +Q+ C C + G+ G+ C
Sbjct: 10 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 43
Score = 34.3 bits (77), Expect = 0.80, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Query: 524 CLSNPCSSHGTLDCVQL-VNNYHCNC-RPGYMGRHCEVKDLAVKVTSMNASPTLAPLTVL 581
C SNPC + G +C+ + Y C+C R G+ G +C + ++ + PT P TV
Sbjct: 10 CCSNPCQNRG--ECMSTGFDQYKCDCTRTGFYGENCTTPEFLTRIKLL-LKPT--PNTVH 64
Query: 582 WI 583
+I
Sbjct: 65 YI 66
Score = 33.9 bits (76), Expect = 0.98, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 987 CASFPCQNGGTCLDEVGD-YSCLCV-DGFSGKHC 1018
C S PCQN G C+ D Y C C GF G++C
Sbjct: 10 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 43
Score = 33.9 bits (76), Expect = 1.0, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 189 CESHPCQNDGSCLDDP-GTFRCVCMCEPGYTGQNCES 224
C S+PCQN G C+ ++C C G+ G+NC +
Sbjct: 10 CCSNPCQNRGECMSTGFDQYKCDCT-RTGFYGENCTT 45
Score = 33.5 bits (75), Expect = 1.3, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 1244 CASNPCQFGGQCEDL-INGYQCRC-KPGTSGTNC 1275
C SNPCQ G+C + Y+C C + G G NC
Sbjct: 10 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 43
Score = 33.1 bits (74), Expect = 1.8, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 1093 CESHPCQNDGSCLDDP-GTFRCVCM-PGFTGTQCET 1126
C S+PCQN G C+ ++C C GF G C T
Sbjct: 10 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTT 45
Score = 32.7 bits (73), Expect = 2.2, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 1169 CVSSPCHNGGICKDS-IAGYTCECL-AGFTGMSCET 1202
C S+PC N G C + Y C+C GF G +C T
Sbjct: 10 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTT 45
Score = 32.3 bits (72), Expect = 2.5, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 1131 CASNPCLNGGICNDL-INTFKCACP-IGFTGSHC 1162
C SNPC N G C + +KC C GF G +C
Sbjct: 10 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 43
>pdb|3KRK|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of L531f Murine Cox-2
pdb|3KRK|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of L531f Murine Cox-2
Length = 591
Score = 39.3 bits (90), Expect = 0.021, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 228 PCDPSPCQNGGVCRELDNLNYECEC-QSGYRGKNC 261
PC +PCQN G C Y+C+C ++G+ G+NC
Sbjct: 7 PCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 41
Score = 38.5 bits (88), Expect = 0.038, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 1320 CASNPCANGGVCVDL-IDGFKCECPR-GYYDARCLS 1353
C SNPC N G C+ D +KC+C R G+Y C +
Sbjct: 8 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTT 43
Score = 37.7 bits (86), Expect = 0.061, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 78 CASSPCRNGAVCTSLE-DTYECDCA-PGFVGQTCS 110
C S+PC+N C S D Y+CDC GF G+ C+
Sbjct: 8 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCT 42
Score = 37.4 bits (85), Expect = 0.089, Method: Composition-based stats.
Identities = 17/34 (50%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 632 CDSNPCQNGGFCRSKEGGGYRCDCP-PGATGTHC 664
C SNPCQN G C S Y+CDC G G +C
Sbjct: 8 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 41
Score = 37.0 bits (84), Expect = 0.12, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 1282 CYSNPCRNGAKCVD-GINRYSCECL-PGYTGLHCET 1315
C SNPC+N +C+ G ++Y C+C G+ G +C T
Sbjct: 8 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTT 43
Score = 36.2 bits (82), Expect = 0.19, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 40 CDSFPCMNGGTCTLKSLDRYTCTCA-PGFTGSQC 72
C S PC N G C D+Y C C GF G C
Sbjct: 8 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 41
Score = 34.3 bits (77), Expect = 0.72, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 1396 CGSNPCQHGGIC-TDHLNGYTCEC-QIGYTGINC 1427
C SNPCQ+ G C + + Y C+C + G+ G NC
Sbjct: 8 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 41
Score = 34.3 bits (77), Expect = 0.78, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 1358 CASDPCLNGGTC-EDGLNQFICHC-KPGYGGKRC 1389
C S+PC N G C G +Q+ C C + G+ G+ C
Sbjct: 8 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 41
Score = 33.9 bits (76), Expect = 0.81, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Query: 524 CLSNPCSSHGTLDCVQL-VNNYHCNC-RPGYMGRHCEVKDLAVKVTSMNASPTLAPLTVL 581
C SNPC + G +C+ + Y C+C R G+ G +C + ++ + PT P TV
Sbjct: 8 CCSNPCQNRG--ECMSTGFDQYKCDCTRTGFYGENCTTPEFLTRIKLL-LKPT--PNTVH 62
Query: 582 WI 583
+I
Sbjct: 63 YI 64
Score = 33.9 bits (76), Expect = 0.98, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 987 CASFPCQNGGTCLDEVGD-YSCLCV-DGFSGKHC 1018
C S PCQN G C+ D Y C C GF G++C
Sbjct: 8 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 41
Score = 33.9 bits (76), Expect = 1.0, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 189 CESHPCQNDGSCLDDP-GTFRCVCMCEPGYTGQNCES 224
C S+PCQN G C+ ++C C G+ G+NC +
Sbjct: 8 CCSNPCQNRGECMSTGFDQYKCDCT-RTGFYGENCTT 43
Score = 33.5 bits (75), Expect = 1.3, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 1244 CASNPCQFGGQCEDL-INGYQCRC-KPGTSGTNC 1275
C SNPCQ G+C + Y+C C + G G NC
Sbjct: 8 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 41
Score = 32.7 bits (73), Expect = 1.8, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 1093 CESHPCQNDGSCLDDP-GTFRCVCM-PGFTGTQCET 1126
C S+PCQN G C+ ++C C GF G C T
Sbjct: 8 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTT 43
Score = 32.7 bits (73), Expect = 2.2, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 1169 CVSSPCHNGGICKDS-IAGYTCECL-AGFTGMSCET 1202
C S+PC N G C + Y C+C GF G +C T
Sbjct: 8 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTT 43
Score = 32.3 bits (72), Expect = 2.5, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 1131 CASNPCLNGGICNDL-INTFKCACP-IGFTGSHC 1162
C SNPC N G C + +KC C GF G +C
Sbjct: 8 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 41
>pdb|3HS5|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS5|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS6|A Chain A, X-Ray Crystal Structure Of Eicosapentaenoic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS6|B Chain B, X-Ray Crystal Structure Of Eicosapentaenoic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS7|A Chain A, X-Ray Crystal Structure Of Docosahexaenoic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS7|B Chain B, X-Ray Crystal Structure Of Docosahexaenoic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
Length = 591
Score = 39.3 bits (90), Expect = 0.021, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 228 PCDPSPCQNGGVCRELDNLNYECEC-QSGYRGKNC 261
PC +PCQN G C Y+C+C ++G+ G+NC
Sbjct: 7 PCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 41
Score = 38.5 bits (88), Expect = 0.038, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 1320 CASNPCANGGVCVDL-IDGFKCECPR-GYYDARCLS 1353
C SNPC N G C+ D +KC+C R G+Y C +
Sbjct: 8 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTT 43
Score = 37.7 bits (86), Expect = 0.061, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 78 CASSPCRNGAVCTSLE-DTYECDCA-PGFVGQTCS 110
C S+PC+N C S D Y+CDC GF G+ C+
Sbjct: 8 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCT 42
Score = 37.4 bits (85), Expect = 0.088, Method: Composition-based stats.
Identities = 17/34 (50%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 632 CDSNPCQNGGFCRSKEGGGYRCDCP-PGATGTHC 664
C SNPCQN G C S Y+CDC G G +C
Sbjct: 8 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 41
Score = 37.0 bits (84), Expect = 0.12, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 1282 CYSNPCRNGAKCVD-GINRYSCECL-PGYTGLHCET 1315
C SNPC+N +C+ G ++Y C+C G+ G +C T
Sbjct: 8 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTT 43
Score = 36.2 bits (82), Expect = 0.19, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 40 CDSFPCMNGGTCTLKSLDRYTCTCA-PGFTGSQC 72
C S PC N G C D+Y C C GF G C
Sbjct: 8 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 41
Score = 34.3 bits (77), Expect = 0.72, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 1396 CGSNPCQHGGIC-TDHLNGYTCEC-QIGYTGINC 1427
C SNPCQ+ G C + + Y C+C + G+ G NC
Sbjct: 8 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 41
Score = 34.3 bits (77), Expect = 0.77, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 1358 CASDPCLNGGTC-EDGLNQFICHC-KPGYGGKRC 1389
C S+PC N G C G +Q+ C C + G+ G+ C
Sbjct: 8 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 41
Score = 34.3 bits (77), Expect = 0.80, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Query: 524 CLSNPCSSHGTLDCVQL-VNNYHCNC-RPGYMGRHCEVKDLAVKVTSMNASPTLAPLTVL 581
C SNPC + G +C+ + Y C+C R G+ G +C + ++ + PT P TV
Sbjct: 8 CCSNPCQNRG--ECMSTGFDQYKCDCTRTGFYGENCTTPEFLTRIKLL-LKPT--PNTVH 62
Query: 582 WI 583
+I
Sbjct: 63 YI 64
Score = 33.9 bits (76), Expect = 0.98, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 987 CASFPCQNGGTCLDEVGD-YSCLCV-DGFSGKHC 1018
C S PCQN G C+ D Y C C GF G++C
Sbjct: 8 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 41
Score = 33.9 bits (76), Expect = 1.0, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 189 CESHPCQNDGSCLDDP-GTFRCVCMCEPGYTGQNCES 224
C S+PCQN G C+ ++C C G+ G+NC +
Sbjct: 8 CCSNPCQNRGECMSTGFDQYKCDCT-RTGFYGENCTT 43
Score = 33.5 bits (75), Expect = 1.3, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 1244 CASNPCQFGGQCEDL-INGYQCRC-KPGTSGTNC 1275
C SNPCQ G+C + Y+C C + G G NC
Sbjct: 8 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 41
Score = 33.1 bits (74), Expect = 1.8, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 1093 CESHPCQNDGSCLDDP-GTFRCVCM-PGFTGTQCET 1126
C S+PCQN G C+ ++C C GF G C T
Sbjct: 8 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTT 43
Score = 32.7 bits (73), Expect = 2.2, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 1169 CVSSPCHNGGICKDS-IAGYTCECL-AGFTGMSCET 1202
C S+PC N G C + Y C+C GF G +C T
Sbjct: 8 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTT 43
Score = 32.3 bits (72), Expect = 2.5, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 1131 CASNPCLNGGICNDL-INTFKCACP-IGFTGSHC 1162
C SNPC N G C + +KC C GF G +C
Sbjct: 8 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 41
>pdb|3OLT|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of R513h Murine Cox-2
pdb|3OLT|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of R513h Murine Cox-2
pdb|3OLU|A Chain A, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of R513h Murine Cox-2
pdb|3OLU|B Chain B, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of R513h Murine Cox-2
Length = 592
Score = 39.3 bits (90), Expect = 0.022, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 228 PCDPSPCQNGGVCRELDNLNYECEC-QSGYRGKNC 261
PC +PCQN G C Y+C+C ++G+ G+NC
Sbjct: 8 PCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 42
Score = 38.5 bits (88), Expect = 0.039, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 1320 CASNPCANGGVCVDL-IDGFKCECPR-GYYDARCLS 1353
C SNPC N G C+ D +KC+C R G+Y C +
Sbjct: 9 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTT 44
Score = 37.7 bits (86), Expect = 0.061, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 78 CASSPCRNGAVCTSLE-DTYECDCA-PGFVGQTCS 110
C S+PC+N C S D Y+CDC GF G+ C+
Sbjct: 9 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCT 43
Score = 37.4 bits (85), Expect = 0.088, Method: Composition-based stats.
Identities = 17/34 (50%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 632 CDSNPCQNGGFCRSKEGGGYRCDCP-PGATGTHC 664
C SNPCQN G C S Y+CDC G G +C
Sbjct: 9 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 42
Score = 37.0 bits (84), Expect = 0.12, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 1282 CYSNPCRNGAKCVD-GINRYSCECL-PGYTGLHCET 1315
C SNPC+N +C+ G ++Y C+C G+ G +C T
Sbjct: 9 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTT 44
Score = 36.2 bits (82), Expect = 0.19, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 40 CDSFPCMNGGTCTLKSLDRYTCTCA-PGFTGSQC 72
C S PC N G C D+Y C C GF G C
Sbjct: 9 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 42
Score = 34.3 bits (77), Expect = 0.73, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 1396 CGSNPCQHGGIC-TDHLNGYTCEC-QIGYTGINC 1427
C SNPCQ+ G C + + Y C+C + G+ G NC
Sbjct: 9 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 42
Score = 34.3 bits (77), Expect = 0.79, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 1358 CASDPCLNGGTC-EDGLNQFICHC-KPGYGGKRC 1389
C S+PC N G C G +Q+ C C + G+ G+ C
Sbjct: 9 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 42
Score = 33.9 bits (76), Expect = 0.82, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Query: 524 CLSNPCSSHGTLDCVQL-VNNYHCNC-RPGYMGRHCEVKDLAVKVTSMNASPTLAPLTVL 581
C SNPC + G +C+ + Y C+C R G+ G +C + ++ + PT P TV
Sbjct: 9 CCSNPCQNRG--ECMSTGFDQYKCDCTRTGFYGENCTTPEFLTRIKLL-LKPT--PNTVH 63
Query: 582 WI 583
+I
Sbjct: 64 YI 65
Score = 33.9 bits (76), Expect = 0.99, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 987 CASFPCQNGGTCLDEVGD-YSCLCV-DGFSGKHC 1018
C S PCQN G C+ D Y C C GF G++C
Sbjct: 9 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 42
Score = 33.9 bits (76), Expect = 1.0, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 189 CESHPCQNDGSCLDDP-GTFRCVCMCEPGYTGQNCES 224
C S+PCQN G C+ ++C C G+ G+NC +
Sbjct: 9 CCSNPCQNRGECMSTGFDQYKCDCT-RTGFYGENCTT 44
Score = 33.5 bits (75), Expect = 1.3, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 1244 CASNPCQFGGQCEDL-INGYQCRC-KPGTSGTNC 1275
C SNPCQ G+C + Y+C C + G G NC
Sbjct: 9 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 42
Score = 32.7 bits (73), Expect = 1.8, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 1093 CESHPCQNDGSCLDDP-GTFRCVCM-PGFTGTQCET 1126
C S+PCQN G C+ ++C C GF G C T
Sbjct: 9 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTT 44
Score = 32.7 bits (73), Expect = 2.2, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 1169 CVSSPCHNGGICKDS-IAGYTCECL-AGFTGMSCET 1202
C S+PC N G C + Y C+C GF G +C T
Sbjct: 9 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTT 44
Score = 32.3 bits (72), Expect = 2.6, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 1131 CASNPCLNGGICNDL-INTFKCACP-IGFTGSHC 1162
C SNPC N G C + +KC C GF G +C
Sbjct: 9 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 42
>pdb|3MDL|A Chain A, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3MDL|B Chain B, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of Cyclooxygenase-2
Length = 587
Score = 39.3 bits (90), Expect = 0.022, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 228 PCDPSPCQNGGVCRELDNLNYECEC-QSGYRGKNC 261
PC +PCQN G C Y+C+C ++G+ G+NC
Sbjct: 8 PCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 42
Score = 38.5 bits (88), Expect = 0.039, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 1320 CASNPCANGGVCVDL-IDGFKCECPR-GYYDARCLS 1353
C SNPC N G C+ D +KC+C R G+Y C +
Sbjct: 9 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTT 44
Score = 37.7 bits (86), Expect = 0.061, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 78 CASSPCRNGAVCTSLE-DTYECDCA-PGFVGQTCS 110
C S+PC+N C S D Y+CDC GF G+ C+
Sbjct: 9 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCT 43
Score = 37.4 bits (85), Expect = 0.089, Method: Composition-based stats.
Identities = 17/34 (50%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 632 CDSNPCQNGGFCRSKEGGGYRCDCP-PGATGTHC 664
C SNPCQN G C S Y+CDC G G +C
Sbjct: 9 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 42
Score = 37.0 bits (84), Expect = 0.12, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 1282 CYSNPCRNGAKCVD-GINRYSCECL-PGYTGLHCET 1315
C SNPC+N +C+ G ++Y C+C G+ G +C T
Sbjct: 9 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTT 44
Score = 36.2 bits (82), Expect = 0.19, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 40 CDSFPCMNGGTCTLKSLDRYTCTCA-PGFTGSQC 72
C S PC N G C D+Y C C GF G C
Sbjct: 9 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 42
Score = 34.3 bits (77), Expect = 0.74, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 1396 CGSNPCQHGGIC-TDHLNGYTCEC-QIGYTGINC 1427
C SNPCQ+ G C + + Y C+C + G+ G NC
Sbjct: 9 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 42
Score = 34.3 bits (77), Expect = 0.79, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 1358 CASDPCLNGGTC-EDGLNQFICHC-KPGYGGKRC 1389
C S+PC N G C G +Q+ C C + G+ G+ C
Sbjct: 9 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 42
Score = 33.9 bits (76), Expect = 0.83, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Query: 524 CLSNPCSSHGTLDCVQL-VNNYHCNC-RPGYMGRHCEVKDLAVKVTSMNASPTLAPLTVL 581
C SNPC + G +C+ + Y C+C R G+ G +C + ++ + PT P TV
Sbjct: 9 CCSNPCQNRG--ECMSTGFDQYKCDCTRTGFYGENCTTPEFLTRIKLL-LKPT--PNTVH 63
Query: 582 WI 583
+I
Sbjct: 64 YI 65
Score = 33.9 bits (76), Expect = 0.99, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 987 CASFPCQNGGTCLDEVGD-YSCLCV-DGFSGKHC 1018
C S PCQN G C+ D Y C C GF G++C
Sbjct: 9 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 42
Score = 33.9 bits (76), Expect = 1.0, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 189 CESHPCQNDGSCLDDP-GTFRCVCMCEPGYTGQNCES 224
C S+PCQN G C+ ++C C G+ G+NC +
Sbjct: 9 CCSNPCQNRGECMSTGFDQYKCDCT-RTGFYGENCTT 44
Score = 33.5 bits (75), Expect = 1.3, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 1244 CASNPCQFGGQCEDL-INGYQCRC-KPGTSGTNC 1275
C SNPCQ G+C + Y+C C + G G NC
Sbjct: 9 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 42
Score = 32.7 bits (73), Expect = 1.8, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 1093 CESHPCQNDGSCLDDP-GTFRCVCM-PGFTGTQCET 1126
C S+PCQN G C+ ++C C GF G C T
Sbjct: 9 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTT 44
Score = 32.7 bits (73), Expect = 2.2, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 1169 CVSSPCHNGGICKDS-IAGYTCECL-AGFTGMSCET 1202
C S+PC N G C + Y C+C GF G +C T
Sbjct: 9 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTT 44
Score = 32.3 bits (72), Expect = 2.6, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 1131 CASNPCLNGGICNDL-INTFKCACP-IGFTGSHC 1162
C SNPC N G C + +KC C GF G +C
Sbjct: 9 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 42
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 39.3 bits (90), Expect = 0.022, Method: Composition-based stats.
Identities = 28/100 (28%), Positives = 39/100 (39%), Gaps = 15/100 (15%)
Query: 1830 LINADADINVPDNSGKTALHWXXXXXXXXXXXXLLSHGVNP---------------REGS 1874
L+ AD+N D+ GKT LH LLS G +P G
Sbjct: 23 LLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGH 82
Query: 1875 YGACKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL 1914
K LL A+ D + P +A+E H ++V+LL
Sbjct: 83 KEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLL 122
Score = 35.4 bits (80), Expect = 0.29, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 18/88 (20%)
Query: 1830 LINADADINVPDNSGKTALHWXXXXXXXXXXXXLLSHGVNPREGSYGACKALLDNFANRE 1889
L++ AD N D+ GKT LH LLS G +P
Sbjct: 89 LLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADP------------------N 130
Query: 1890 ITDHMDRLPRDVASERLHHDIVRLLDEH 1917
+D R P D+A E + ++V+LL++
Sbjct: 131 TSDSDGRTPLDLAREHGNEEVVKLLEKQ 158
>pdb|3P5C|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE RECEPTOR
IN AN Extended Conformation
Length = 440
Score = 38.9 bits (89), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 40/76 (52%), Gaps = 10/76 (13%)
Query: 1128 IDECASNPCL--NGG---ICNDLINTFKCACPIGF---TGSHCQINIDDCVSSPCHNGGI 1179
I EC +N CL NGG +CNDL ++C CP GF C+ +ID+C P +
Sbjct: 35 IKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCE-DIDEC-QDPDTCSQL 92
Query: 1180 CKDSIAGYTCECLAGF 1195
C + GY C+C GF
Sbjct: 93 CVNLEGGYKCQCEEGF 108
Score = 35.0 bits (79), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 38/76 (50%), Gaps = 10/76 (13%)
Query: 1317 INECASNPCA--NGG---VCVDLIDGFKCECPRGYY---DARCLSDVDECASDPCLNGGT 1368
I EC +N C NGG VC DL G++C CP G+ RC D+DEC DP
Sbjct: 35 IKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRC-EDIDEC-QDPDTCSQL 92
Query: 1369 CEDGLNQFICHCKPGY 1384
C + + C C+ G+
Sbjct: 93 CVNLEGGYKCQCEEGF 108
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 10/76 (13%)
Query: 1355 VDECASDPCL--NGG---TCEDGLNQFICHCKPGY---GGKRCEFDIDECGSNPCQHGGI 1406
+ EC ++ CL NGG C D + C C G+ +RCE DIDEC +P +
Sbjct: 35 IKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCE-DIDEC-QDPDTCSQL 92
Query: 1407 CTDHLNGYTCECQIGY 1422
C + GY C+C+ G+
Sbjct: 93 CVNLEGGYKCQCEEGF 108
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 33/80 (41%), Gaps = 21/80 (26%)
Query: 88 VCTSLEDTYECDCAPGF--VGQTCSEDIIECVDDPCVHGECFNTHGSYT------FQM-- 137
VC L+ YEC C GF V Q EDI EC D C N G Y FQ+
Sbjct: 53 VCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDP 112
Query: 138 -----------IFIFFTNQY 146
++FFTN++
Sbjct: 113 HTKACKAVGSIAYLFFTNRH 132
Score = 30.8 bits (68), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 15/67 (22%)
Query: 601 NGG---VCTALDGGHTCICPDNY---SGRNCEYFGYDCDSNPCQNGGFCRS---KEGGGY 651
NGG VC L G+ C+CPD + + R CE D + CQ+ C GGY
Sbjct: 47 NGGCSHVCNDLKIGYECLCPDGFQLVAQRRCE------DIDECQDPDTCSQLCVNLEGGY 100
Query: 652 RCDCPPG 658
+C C G
Sbjct: 101 KCQCEEG 107
Score = 30.8 bits (68), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 37/74 (50%), Gaps = 10/74 (13%)
Query: 1393 IDECGSNPC--QHGG---ICTDHLNGYTCECQIGYTGI---NCEINIDDCAFKPCRHGGT 1444
I ECG+N C +GG +C D GY C C G+ + CE +ID+C P
Sbjct: 35 IKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCE-DIDECQ-DPDTCSQL 92
Query: 1445 CIDLVNAYKCVCAK 1458
C++L YKC C +
Sbjct: 93 CVNLEGGYKCQCEE 106
>pdb|1ESL|A Chain A, Insight Into E-Selectin(Slash)ligand Interaction From The
Crystal Structure And Mutagenesis Of The Lec(Slash)egf
Domains
Length = 162
Score = 38.1 bits (87), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 5/42 (11%)
Query: 1282 CYSNPCRNGA-----KCVDGINRYSCECLPGYTGLHCETNIN 1318
CY+ C N + +CV+ IN Y+C+C PG++GL CE +N
Sbjct: 117 CYTAACTNTSCSGHGECVETINNYTCKCDPGFSGLKCEQIVN 158
Score = 37.4 bits (85), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 524 CLSNPCSSHGTLDCVQLVNNYHCNCRPGYMGRHCE 558
C + CS HG +CV+ +NNY C C PG+ G CE
Sbjct: 122 CTNTSCSGHG--ECVETINNYTCKCDPGFSGLKCE 154
Score = 36.6 bits (83), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 1235 ALCNTQLDECASNPCQFGGQCEDLINGYQCRCKPGTSGTNCEININ 1280
ALC T C + C G+C + IN Y C+C PG SG CE +N
Sbjct: 115 ALCYTAA--CTNTSCSGHGECVETINNYTCKCDPGFSGLKCEQIVN 158
Score = 35.0 bits (79), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 1169 CVSSPCHNGGICKDSIAGYTCECLAGFTGMSCETNIN 1205
C ++ C G C ++I YTC+C GF+G+ CE +N
Sbjct: 122 CTNTSCSGHGECVETINNYTCKCDPGFSGLKCEQIVN 158
Score = 32.7 bits (73), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 1215 GECIDGENSFTCACHPGFTGALC 1237
GEC++ N++TC C PGF+G C
Sbjct: 131 GECVETINNYTCKCDPGFSGLKC 153
Score = 31.6 bits (70), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 1396 CGSNPCQHGGICTDHLNGYTCECQIGYTGINCE 1428
C + C G C + +N YTC+C G++G+ CE
Sbjct: 122 CTNTSCSGHGECVETINNYTCKCDPGFSGLKCE 154
Score = 31.6 bits (70), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 39 SCDSFPCMNGGTCTLKSLDRYTCTCAPGFTGSQCELQDHCAS 80
+C + C G C +++++ YTC C PGF+G +CE +C +
Sbjct: 121 ACTNTSCSGHGEC-VETINNYTCKCDPGFSGLKCEQIVNCTA 161
Score = 31.2 bits (69), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 984 TDDCASFPCQNGGTCLDEVGDYSCLCVDGFSGKHCEVDID 1023
T C + C G C++ + +Y+C C GFSG CE ++
Sbjct: 119 TAACTNTSCSGHGECVETINNYTCKCDPGFSGLKCEQIVN 158
Score = 31.2 bits (69), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 154 SPCEHDGTCVNTPGSFACNCTQGFTGPRCETNVN 187
+ C G CV T ++ C C GF+G +CE VN
Sbjct: 125 TSCSGHGECVETINNYTCKCDPGFSGLKCEQIVN 158
Score = 31.2 bits (69), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 1058 SPCEHDGTCVNTPGSFACNCTQGFTGPRCETNVN 1091
+ C G CV T ++ C C GF+G +CE VN
Sbjct: 125 TSCSGHGECVETINNYTCKCDPGFSGLKCEQIVN 158
Score = 31.2 bits (69), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 1358 CASDPCLNGGTCEDGLNQFICHCKPGYGGKRCE 1390
C + C G C + +N + C C PG+ G +CE
Sbjct: 122 CTNTSCSGHGECVETINNYTCKCDPGFSGLKCE 154
Score = 30.8 bits (68), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 1662 CLPGACHNNGTCVDKVGGFECRCPPGFVGSR 1692
C +C +G CV+ + + C+C PGF G +
Sbjct: 122 CTNTSCSGHGECVETINNYTCKCDPGFSGLK 152
Score = 30.4 bits (67), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 1093 CESHPCQNDGSCLDDPGTFRCVCMPGFTGTQCETDID 1129
C + C G C++ + C C PGF+G +CE ++
Sbjct: 122 CTNTSCSGHGECVETINNYTCKCDPGFSGLKCEQIVN 158
>pdb|1GK5|A Chain A, Solution Structure The MegfTGFALPHA44-50 Chimeric Growth
Factor
Length = 49
Score = 38.1 bits (87), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 45 CMNGGTCT-LKSLDRYTCTCAPGFTGSQCELQDHCA 79
C+NGG C ++SLD YTC C G++G +CE D A
Sbjct: 14 CLNGGVCMHIESLDSYTCNCVIGYSGDRCEHADLLA 49
Score = 31.2 bits (69), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 1363 CLNGGTCE--DGLNQFICHCKPGYGGKRCE 1390
CLNGG C + L+ + C+C GY G RCE
Sbjct: 14 CLNGGVCMHIESLDSYTCNCVIGYSGDRCE 43
Score = 31.2 bits (69), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 234 CQNGGVCRELDNLN-YECECQSGYRGKNCEE 263
C NGGVC +++L+ Y C C GY G CE
Sbjct: 14 CLNGGVCMHIESLDSYTCNCVIGYSGDRCEH 44
>pdb|1AUT|L Chain L, Human Activated Protein C
Length = 114
Score = 37.7 bits (86), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 35/78 (44%), Gaps = 8/78 (10%)
Query: 302 DVDECSIRP------SVCHNGATCTNSVGGFSCICVNGWTGPDCSLNIDDCAGAACFNGA 355
D D+C + P S+C TC +G FSC C +GW G C + + G
Sbjct: 5 DGDQCLVLPLEHPCASLCCGHGTCIXGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGC 64
Query: 356 T--CIDRVGSFYCQCTPG 371
T C++ VG C C PG
Sbjct: 65 THYCLEEVGWRRCSCAPG 82
Score = 37.7 bits (86), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 36/89 (40%), Gaps = 8/89 (8%)
Query: 907 PCVPNRCQHGARCTPSANFQDFACHCGVGWTGRYCNEDVDECQLSSPCRNGATCH---NT 963
PC C HG T F+C C GW GR+C +V L+ NG H
Sbjct: 17 PCASLCCGHG---TCIXGIGSFSCDCRSGWEGRFCQREVSF--LNCSLDNGGCTHYCLEE 71
Query: 964 NGSYLCECAKGYEGRDCLINTDDCASFPC 992
G C CA GY+ D L+ FPC
Sbjct: 72 VGWRRCSCAPGYKLGDDLLQCHPAVKFPC 100
Score = 36.2 bits (82), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 1064 GTCVNTPGSFACNCTQGFTGPRCETNVN--ECESHPCQNDGSCLDDPGTFRCVCMPGFT 1120
GTC+ GSF+C+C G+ G C+ V+ C CL++ G RC C PG+
Sbjct: 26 GTCIXGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTHYCLEEVGWRRCSCAPGYK 84
Score = 32.3 bits (72), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 160 GTCVNTPGSFACNCTQGFTGPRCETNVN--ECESHPCQNDGSCLDDPGTFRCVCMCEPGY 217
GTC+ GSF+C+C G+ G C+ V+ C CL++ G RC C PGY
Sbjct: 26 GTCIXGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTHYCLEEVGWRRCSCA--PGY 83
Query: 218 T 218
Sbjct: 84 K 84
Score = 32.3 bits (72), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 2/85 (2%)
Query: 1205 NDCASNPCHRGECIDGENSFTCACHPGFTGALCNTQLD--ECASNPCQFGGQCEDLINGY 1262
+ CAS C G CI G SF+C C G+ G C ++ C+ + C + +
Sbjct: 16 HPCASLCCGHGTCIXGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTHYCLEEVGWR 75
Query: 1263 QCRCKPGTSGTNCEININECYSNPC 1287
+C C PG + + + PC
Sbjct: 76 RCSCAPGYKLGDDLLQCHPAVKFPC 100
Score = 32.0 bits (71), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Query: 270 GNLCQNGATCMDGINKYSCLCLATYTGDLCEQDVD--ECSIRPSVCHNGATCTNSVGGFS 327
+LC TC+ GI +SC C + + G C+++V CS+ C + C VG
Sbjct: 19 ASLCCGHGTCIXGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTH--YCLEEVGWRR 76
Query: 328 CICVNGWTGPD 338
C C G+ D
Sbjct: 77 CSCAPGYKLGD 87
Score = 32.0 bits (71), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 8/69 (11%)
Query: 951 SSPCRNGATCHNTNGSYLCECAKGYEGRDCL--INTDDCASFPCQNGG---TCLDEVGDY 1005
+S C TC GS+ C+C G+EGR C ++ +C+ NGG CL+EVG
Sbjct: 19 ASLCCGHGTCIXGIGSFSCDCRSGWEGRFCQREVSFLNCSL---DNGGCTHYCLEEVGWR 75
Query: 1006 SCLCVDGFS 1014
C C G+
Sbjct: 76 RCSCAPGYK 84
Score = 31.6 bits (70), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 972 AKGYEGRDCLINTDD--CASFPCQNGGTCLDEVGDYSCLCVDGFSGKHCEVDI 1022
+K +G CL+ + CAS C +G TC+ +G +SC C G+ G+ C+ ++
Sbjct: 1 SKHVDGDQCLVLPLEHPCASLCCGHG-TCIXGIGSFSCDCRSGWEGRFCQREV 52
Score = 31.2 bits (69), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 39/86 (45%), Gaps = 8/86 (9%)
Query: 346 CAGAACFNGATCIDRVGSFYCQCTPGKTGLLCHLEDACTSNPCHADAICDTNPIIN--GS 403
CA C +G TCI +GSF C C G G C E + + C D T+ + G
Sbjct: 18 CASLCCGHG-TCIXGIGSFSCDCRSGWEGRFCQREVSFLN--CSLDNGGCTHYCLEEVGW 74
Query: 404 YTCSCASGYKGVNCSEDINECEQGIN 429
CSCA GYK +D+ +C +
Sbjct: 75 RRCSCAPGYK---LGDDLLQCHPAVK 97
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 37.7 bits (86), Expect = 0.068, Method: Composition-based stats.
Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 15/103 (14%)
Query: 1830 LINADADINVPDNSGKTALHWXXXXXXXXXXXXLLSHG--VNPRE-------------GS 1874
LI+ AD+N D+ G+T LH L+S G VN ++ G
Sbjct: 56 LISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGH 115
Query: 1875 YGACKALLDNFANREITDHMDRLPRDVASERLHHDIVRLLDEH 1917
K L+ A+ +D R P D+A E + ++V+LL++
Sbjct: 116 KEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQ 158
Score = 33.5 bits (75), Expect = 1.1, Method: Composition-based stats.
Identities = 28/100 (28%), Positives = 40/100 (40%), Gaps = 15/100 (15%)
Query: 1830 LINADADINVPDNSGKTALHWXXXXXXXXXXXXLLSHG--VNPRE-------------GS 1874
LI AD+N D+ G+T LH L+S G VN ++ G
Sbjct: 23 LIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGH 82
Query: 1875 YGACKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL 1914
K L+ A+ D R P A+E H ++V+LL
Sbjct: 83 KEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLL 122
>pdb|1EGF|A Chain A, Solution Structure Of Murine Epidermal Growth Factor
Determined By Nmr Spectroscopy And Refined By Energy
Minimization With Restraints
pdb|1EPG|A Chain A, Three-Dimensional Nuclear Magnetic Resonance Structures
Of Mouse Epidermal Growth Factor In Acidic And
Physiological Ph Solutions
pdb|1EPH|A Chain A, Three-Dimensional Nuclear Magnetic Resonance Structures
Of Mouse Epidermal Growth Factor In Acidic And
Physiological Ph Solutions
pdb|1EPI|A Chain A, Three-Dimensional Nuclear Magnetic Resonance Structures
Of Mouse Epidermal Growth Factor In Acidic And
Physiological Ph Solutions
pdb|1EPJ|A Chain A, Three-Dimensional Nuclear Magnetic Resonance Structures
Of Mouse Epidermal Growth Factor In Acidic And
Physiological Ph Solutions
pdb|3EGF|A Chain A, Solution Structure Of Murine Epidermal Growth Factor
Determined By Nmr Spectroscopy And Refined By Energy
Minimization With Restraints
Length = 53
Score = 37.4 bits (85), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Query: 45 CMNGGTCT-LKSLDRYTCTCAPGFTGSQCELQD 76
C+NGG C ++SLD YTC C G++G +C+ +D
Sbjct: 14 CLNGGVCMHIESLDSYTCNCVIGYSGDRCQTRD 46
Score = 31.6 bits (70), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
Query: 1136 CLNGGICNDL--INTFKCACPIGFTGSHCQ 1163
CLNGG+C + ++++ C C IG++G CQ
Sbjct: 14 CLNGGVCMHIESLDSYTCNCVIGYSGDRCQ 43
Score = 30.8 bits (68), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 1174 CHNGGICK--DSIAGYTCECLAGFTGMSCETN 1203
C NGG+C +S+ YTC C+ G++G C+T
Sbjct: 14 CLNGGVCMHIESLDSYTCNCVIGYSGDRCQTR 45
>pdb|1G1T|A Chain A, Crystal Structure Of E-Selectin LectinEGF DOMAINS
Complexed With Slex
Length = 157
Score = 37.4 bits (85), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 524 CLSNPCSSHGTLDCVQLVNNYHCNCRPGYMGRHCE 558
C + CS HG +CV+ +NNY C C PG+ G CE
Sbjct: 122 CTNTSCSGHG--ECVETINNYTCKCDPGFSGLKCE 154
Score = 36.2 bits (82), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 5/38 (13%)
Query: 1282 CYSNPCRNGA-----KCVDGINRYSCECLPGYTGLHCE 1314
CY+ C N + +CV+ IN Y+C+C PG++GL CE
Sbjct: 117 CYTAACTNTSCSGHGECVETINNYTCKCDPGFSGLKCE 154
Score = 35.4 bits (80), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 1235 ALCNTQLDECASNPCQFGGQCEDLINGYQCRCKPGTSGTNCE 1276
ALC T C + C G+C + IN Y C+C PG SG CE
Sbjct: 115 ALCYTAA--CTNTSCSGHGECVETINNYTCKCDPGFSGLKCE 154
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 1169 CVSSPCHNGGICKDSIAGYTCECLAGFTGMSCE 1201
C ++ C G C ++I YTC+C GF+G+ CE
Sbjct: 122 CTNTSCSGHGECVETINNYTCKCDPGFSGLKCE 154
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 1215 GECIDGENSFTCACHPGFTGALC 1237
GEC++ N++TC C PGF+G C
Sbjct: 131 GECVETINNYTCKCDPGFSGLKC 153
Score = 31.6 bits (70), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 1396 CGSNPCQHGGICTDHLNGYTCECQIGYTGINCE 1428
C + C G C + +N YTC+C G++G+ CE
Sbjct: 122 CTNTSCSGHGECVETINNYTCKCDPGFSGLKCE 154
Score = 31.2 bits (69), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 39 SCDSFPCMNGGTCTLKSLDRYTCTCAPGFTGSQCE 73
+C + C G C +++++ YTC C PGF+G +CE
Sbjct: 121 ACTNTSCSGHGEC-VETINNYTCKCDPGFSGLKCE 154
Score = 31.2 bits (69), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 984 TDDCASFPCQNGGTCLDEVGDYSCLCVDGFSGKHCE 1019
T C + C G C++ + +Y+C C GFSG CE
Sbjct: 119 TAACTNTSCSGHGECVETINNYTCKCDPGFSGLKCE 154
Score = 31.2 bits (69), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 1358 CASDPCLNGGTCEDGLNQFICHCKPGYGGKRCE 1390
C + C G C + +N + C C PG+ G +CE
Sbjct: 122 CTNTSCSGHGECVETINNYTCKCDPGFSGLKCE 154
Score = 30.4 bits (67), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 1662 CLPGACHNNGTCVDKVGGFECRCPPGFVGSR 1692
C +C +G CV+ + + C+C PGF G +
Sbjct: 122 CTNTSCSGHGECVETINNYTCKCDPGFSGLK 152
>pdb|4BDW|A Chain A, The Stucture Of The Fni-egf Tandem Domain Of Coagulation
Factor Xii In Complex With Holmium
pdb|4BDX|A Chain A, The Stucture Of The Fni-egf Tandem Domain Of Coagulation
Factor Xii
Length = 85
Score = 37.4 bits (85), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 1131 CASNPCLNGGICNDLINTFKCACPIGFTGSHCQIN 1165
C +NPCL+GG C ++ C CP+G+TG C ++
Sbjct: 48 CRTNPCLHGGRCLEVEGHRLCHCPVGYTGPFCDVD 82
Score = 35.0 bits (79), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 1396 CGSNPCQHGGICTDHLNGYTCECQIGYTGINCEIN 1430
C +NPC HGG C + C C +GYTG C+++
Sbjct: 48 CRTNPCLHGGRCLEVEGHRLCHCPVGYTGPFCDVD 82
Score = 34.7 bits (78), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 1348 DARCLSDVDE-CASDPCLNGGTCEDGLNQFICHCKPGYGGKRCEFD 1392
DA C + C ++PCL+GG C + +CHC GY G C+ D
Sbjct: 37 DAHCQRLASQACRTNPCLHGGRCLEVEGHRLCHCPVGYTGPFCDVD 82
Score = 33.9 bits (76), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 638 QNGGFCRSKEGGGYRCDCPPGATGTHCELDSRNECYSNPCQHAGTCEDRIADYACYCLPM 697
+N + R+++ RC C HC+ + C +NPC H G C + C+C
Sbjct: 16 KNEIWYRTEQAAVARCQCK--GPDAHCQRLASQACRTNPCLHGGRCLEVEGHRLCHCPVG 73
Query: 698 WNGKNCDL 705
+ G CD+
Sbjct: 74 YTGPFCDV 81
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 969 CECAKGYEGRDCLINTDDCASFPCQNGGTCLDEVGDYSCLCVDGFSGKHCEVD 1021
C+C KG + + + C + PC +GG CL+ G C C G++G C+VD
Sbjct: 31 CQC-KGPDAHCQRLASQACRTNPCLHGGRCLEVEGHRLCHCPVGYTGPFCDVD 82
Score = 32.3 bits (72), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 632 CDSNPCQNGGFCRSKEGGGYRCDCPPGATGTHCELDS 668
C +NPC +GG C EG C CP G TG C++D+
Sbjct: 48 CRTNPCLHGGRCLEVEGHRL-CHCPVGYTGPFCDVDT 83
Score = 32.0 bits (71), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 154 SPCEHDGTCVNTPGSFACNCTQGFTGPRCETNV 186
+PC H G C+ G C+C G+TGP C+ +
Sbjct: 51 NPCLHGGRCLEVEGHRLCHCPVGYTGPFCDVDT 83
Score = 32.0 bits (71), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 1058 SPCEHDGTCVNTPGSFACNCTQGFTGPRCETNV 1090
+PC H G C+ G C+C G+TGP C+ +
Sbjct: 51 NPCLHGGRCLEVEGHRLCHCPVGYTGPFCDVDT 83
Score = 32.0 bits (71), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 1312 HCETNINE-CASNPCANGGVCVDLIDGFKCECPRGYYDARCLSDVDECA 1359
HC+ ++ C +NPC +GG C+++ C CP GY C DVD A
Sbjct: 39 HCQRLASQACRTNPCLHGGRCLEVEGHRLCHCPVGYTGPFC--DVDTAA 85
Score = 30.8 bits (68), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 1263 QCRCKPGTSGTNCEININECYSNPCRNGAKCVDGINRYSCECLPGYTGLHCETN 1316
+C+CK G + C +NPC +G +C++ C C GYTG C+ +
Sbjct: 30 RCQCK-GPDAHCQRLASQACRTNPCLHGGRCLEVEGHRLCHCPVGYTGPFCDVD 82
>pdb|3F6U|L Chain L, Crystal Structure Of Human Activated Protein C (Apc)
Complexed With Ppack
Length = 98
Score = 37.4 bits (85), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 36/89 (40%), Gaps = 8/89 (8%)
Query: 907 PCVPNRCQHGARCTPSANFQDFACHCGVGWTGRYCNEDVDECQLSSPCRNGATCH---NT 963
PC C HG T F+C C GW GR+C +V L+ NG H
Sbjct: 10 PCASLCCGHG---TCIDGIGSFSCDCRSGWEGRFCQREVSF--LNCSLDNGGCTHYCLEE 64
Query: 964 NGSYLCECAKGYEGRDCLINTDDCASFPC 992
G C CA GY+ D L+ FPC
Sbjct: 65 VGWRRCSCAPGYKLGDDLLQCHPAVKFPC 93
Score = 36.2 bits (82), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 1057 GSPCEHDGTCVNTPGSFACNCTQGFTGPRCETNVN--ECESHPCQNDGSCLDDPGTFRCV 1114
S C GTC++ GSF+C+C G+ G C+ V+ C CL++ G RC
Sbjct: 12 ASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTHYCLEEVGWRRCS 71
Query: 1115 CMPGFT 1120
C PG+
Sbjct: 72 CAPGYK 77
Score = 35.4 bits (80), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 311 SVCHNGATCTNSVGGFSCICVNGWTGPDCSLNIDDCAGAACFNGAT--CIDRVGSFYCQC 368
S+C TC + +G FSC C +GW G C + + G T C++ VG C C
Sbjct: 13 SLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTHYCLEEVGWRRCSC 72
Query: 369 TPG 371
PG
Sbjct: 73 APG 75
Score = 34.7 bits (78), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 2/90 (2%)
Query: 1205 NDCASNPCHRGECIDGENSFTCACHPGFTGALCNTQLD--ECASNPCQFGGQCEDLINGY 1262
+ CAS C G CIDG SF+C C G+ G C ++ C+ + C + +
Sbjct: 9 HPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTHYCLEEVGWR 68
Query: 1263 QCRCKPGTSGTNCEININECYSNPCRNGAK 1292
+C C PG + + + PC K
Sbjct: 69 RCSCAPGYKLGDDLLQCHPAVKFPCGRPWK 98
Score = 34.3 bits (77), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 270 GNLCQNGATCMDGINKYSCLCLATYTGDLCEQDVD--ECSIRPSVCHNGATCTNSVGGFS 327
+LC TC+DGI +SC C + + G C+++V CS+ C + C VG
Sbjct: 12 ASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTH--YCLEEVGWRR 69
Query: 328 CICVNGWTGPD 338
C C G+ D
Sbjct: 70 CSCAPGYKLGD 80
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 40/86 (46%), Gaps = 8/86 (9%)
Query: 346 CAGAACFNGATCIDRVGSFYCQCTPGKTGLLCHLEDACTSNPCHADAICDTNPIIN--GS 403
CA C +G TCID +GSF C C G G C E + + C D T+ + G
Sbjct: 11 CASLCCGHG-TCIDGIGSFSCDCRSGWEGRFCQREVSFLN--CSLDNGGCTHYCLEEVGW 67
Query: 404 YTCSCASGYKGVNCSEDINECEQGIN 429
CSCA GYK +D+ +C +
Sbjct: 68 RRCSCAPGYK---LGDDLLQCHPAVK 90
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 153 GSPCEHDGTCVNTPGSFACNCTQGFTGPRCETNVN--ECESHPCQNDGSCLDDPGTFRCV 210
S C GTC++ GSF+C+C G+ G C+ V+ C CL++ G R
Sbjct: 12 ASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTHYCLEEVGWRR-- 69
Query: 211 CMCEPGYT 218
C C PGY
Sbjct: 70 CSCAPGYK 77
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 8/69 (11%)
Query: 951 SSPCRNGATCHNTNGSYLCECAKGYEGRDCL--INTDDCASFPCQNGG---TCLDEVGDY 1005
+S C TC + GS+ C+C G+EGR C ++ +C+ NGG CL+EVG
Sbjct: 12 ASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSL---DNGGCTHYCLEEVGWR 68
Query: 1006 SCLCVDGFS 1014
C C G+
Sbjct: 69 RCSCAPGYK 77
Score = 31.6 bits (70), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 987 CASFPCQNGGTCLDEVGDYSCLCVDGFSGKHCEVDID 1023
CAS C +G TC+D +G +SC C G+ G+ C+ ++
Sbjct: 11 CASLCCGHG-TCIDGIGSFSCDCRSGWEGRFCQREVS 46
Score = 31.6 bits (70), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 8/59 (13%)
Query: 1293 CVDGINRYSCECLPGYTGLHCETNIN--ECASNPCANGG---VCVDLIDGFKCECPRGY 1346
C+DGI +SC+C G+ G C+ ++ C+ + NGG C++ + +C C GY
Sbjct: 21 CIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLD---NGGCTHYCLEEVGWRRCSCAPGY 76
Score = 30.4 bits (67), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
Query: 1363 CLNGGTCEDGLNQFICHCKPGYGGKRCEFDID----ECGSNPCQHGGICTDHLNGYTCEC 1418
C GTC DG+ F C C+ G+ G+ C+ ++ + C H C + + C C
Sbjct: 15 CCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTH--YCLEEVGWRRCSC 72
Query: 1419 QIGYT 1423
GY
Sbjct: 73 APGYK 77
>pdb|1UZK|A Chain A, Integrin Binding Cbegf22-tb4-cbegf33 Fragment Of Human
Fibrillin-1, Ca Bound To Cbegf23 Domain Only
Length = 162
Score = 37.0 bits (84), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 61/159 (38%), Gaps = 29/159 (18%)
Query: 944 DVDECQLSSPCRNGATCHNTNGSYLCECAKGYEGRDCLINTDDCASFPC--------QNG 995
DV+EC + C +G C NT GSY+C+C +E + D S C NG
Sbjct: 2 DVNECLDPTTCISG-NCVNTPGSYICDCPPDFELNPTRVGCVDTRSGNCYLDIRPRGDNG 60
Query: 996 GT-CLDEVGDYSCLCVDGFSGKHCEVDIDECSSNPCHNGATCNQFQMIFI------FFTN 1048
T C +E+G G S C + + PC N + + F N
Sbjct: 61 DTACSNEIG-------VGVSKASCCCSLGKAWGTPCEXCPAVNTSEYKILCPGGEGFRPN 113
Query: 1049 QYSWFLIAGSPCE------HDGTCVNTPGSFACNCTQGF 1081
+ L C+ G C+NT GSF C C G+
Sbjct: 114 PITVILEDIDECQELPGLCQGGKCINTFGSFQCRCPTGY 152
Score = 32.0 bits (71), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 5/60 (8%)
Query: 921 PSANFQDFACHCGVGWTGR-----YCNEDVDECQLSSPCRNGATCHNTNGSYLCECAKGY 975
P+ N ++ C G R ED+DECQ G C NT GS+ C C GY
Sbjct: 93 PAVNTSEYKILCPGGEGFRPNPITVILEDIDECQELPGLCQGGKCINTFGSFQCRCPTGY 152
Score = 30.8 bits (68), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 301 QDVDECSIRPSVCHNGATCTNSVGGFSCICVNGW 334
+D+DEC P +C G C N+ G F C C G+
Sbjct: 120 EDIDECQELPGLCQ-GGKCINTFGSFQCRCPTGY 152
Score = 30.8 bits (68), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 56/156 (35%), Gaps = 13/156 (8%)
Query: 1202 TNINDCAS-NPCHRGECIDGENSFTCACHPGFTGALCNTQLDECASNPCQFGGQCEDLIN 1260
T++N+C C G C++ S+ C C P F + S C +
Sbjct: 1 TDVNECLDPTTCISGNCVNTPGSYICDCPPDFELNPTRVGCVDTRSGNCYLDIRPRGDNG 60
Query: 1261 GYQC--RCKPGTSGTNCEININECYSNPCRNGAKCVDGINRYSCECLPGYTGLH------ 1312
C G S +C ++ + + PC + C PG G
Sbjct: 61 DTACSNEIGVGVSKASCCCSLGKAWGTPCEXCPAVNTSEYKILC---PGGEGFRPNPITV 117
Query: 1313 CETNINECASNP-CANGGVCVDLIDGFKCECPRGYY 1347
+I+EC P GG C++ F+C CP GYY
Sbjct: 118 ILEDIDECQELPGLCQGGKCINTFGSFQCRCPTGYY 153
Score = 30.8 bits (68), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 1663 LPGACHNNGTCVDKVGGFECRCPPGF 1688
LPG C G C++ G F+CRCP G+
Sbjct: 128 LPGLCQG-GKCINTFGSFQCRCPTGY 152
>pdb|1UZJ|A Chain A, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Holo Form.
pdb|1UZJ|B Chain B, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Holo Form.
pdb|1UZJ|C Chain C, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Holo Form.
pdb|1UZP|A Chain A, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Sm Bound Form Cbegf23 Domain Only.
pdb|1UZQ|A Chain A, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Apo Form Cbegf23 Domain Only
Length = 162
Score = 36.6 bits (83), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 61/159 (38%), Gaps = 29/159 (18%)
Query: 944 DVDECQLSSPCRNGATCHNTNGSYLCECAKGYEGRDCLINTDDCASFPC--------QNG 995
DV+EC + C +G C NT GSY+C+C +E + D S C NG
Sbjct: 2 DVNECLDPTTCISG-NCVNTPGSYICDCPPDFELNPTRVGCVDTRSGNCYLDIRPRGDNG 60
Query: 996 GT-CLDEVGDYSCLCVDGFSGKHCEVDIDECSSNPCHNGATCNQFQMIFI------FFTN 1048
T C +E+G G S C + + PC N + + F N
Sbjct: 61 DTACSNEIG-------VGVSKASCCCSLGKAWGTPCEMCPAVNTSEYKILCPGGEGFRPN 113
Query: 1049 QYSWFLIAGSPCE------HDGTCVNTPGSFACNCTQGF 1081
+ L C+ G C+NT GSF C C G+
Sbjct: 114 PITVILEDIDECQELPGLCQGGKCINTFGSFQCRCPTGY 152
Score = 32.0 bits (71), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 5/60 (8%)
Query: 921 PSANFQDFACHCGVGWTGR-----YCNEDVDECQLSSPCRNGATCHNTNGSYLCECAKGY 975
P+ N ++ C G R ED+DECQ G C NT GS+ C C GY
Sbjct: 93 PAVNTSEYKILCPGGEGFRPNPITVILEDIDECQELPGLCQGGKCINTFGSFQCRCPTGY 152
Score = 30.8 bits (68), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 301 QDVDECSIRPSVCHNGATCTNSVGGFSCICVNGW 334
+D+DEC P +C G C N+ G F C C G+
Sbjct: 120 EDIDECQELPGLCQ-GGKCINTFGSFQCRCPTGY 152
Score = 30.8 bits (68), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 1663 LPGACHNNGTCVDKVGGFECRCPPGF 1688
LPG C G C++ G F+CRCP G+
Sbjct: 128 LPGLCQG-GKCINTFGSFQCRCPTGY 152
Score = 30.8 bits (68), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 59/157 (37%), Gaps = 15/157 (9%)
Query: 1202 TNINDCAS-NPCHRGECIDGENSFTCACHPGFTGALCNTQLDECASNPCQFGGQCEDLIN 1260
T++N+C C G C++ S+ C C P F + S C +
Sbjct: 1 TDVNECLDPTTCISGNCVNTPGSYICDCPPDFELNPTRVGCVDTRSGNCYLDIRPRGDNG 60
Query: 1261 GYQC--RCKPGTSGTNCEININECYSNPCRNGAKCVDGINRYSCECL-PGYTGLH----- 1312
C G S +C ++ + + PC + +N + L PG G
Sbjct: 61 DTACSNEIGVGVSKASCCCSLGKAWGTPC----EMCPAVNTSEYKILCPGGEGFRPNPIT 116
Query: 1313 -CETNINECASNP-CANGGVCVDLIDGFKCECPRGYY 1347
+I+EC P GG C++ F+C CP GYY
Sbjct: 117 VILEDIDECQELPGLCQGGKCINTFGSFQCRCPTGYY 153
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 36.6 bits (83), Expect = 0.13, Method: Composition-based stats.
Identities = 32/106 (30%), Positives = 43/106 (40%), Gaps = 15/106 (14%)
Query: 1824 DDCASYLINADADINVPDNSGKTALHWXXXXXXXXXXXXLLSHG--VNPRE--------- 1872
DD L+ AD+N D+SGKT LH LL HG VN +
Sbjct: 27 DDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHL 86
Query: 1873 ----GSYGACKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL 1914
G + LL N A+ TD P +A++ H +IV +L
Sbjct: 87 AALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVL 132
>pdb|1G1Q|A Chain A, Crystal Structure Of P-Selectin LectinEGF DOMAINS
pdb|1G1Q|B Chain B, Crystal Structure Of P-Selectin LectinEGF DOMAINS
pdb|1G1Q|C Chain C, Crystal Structure Of P-Selectin LectinEGF DOMAINS
pdb|1G1Q|D Chain D, Crystal Structure Of P-Selectin LectinEGF DOMAINS
pdb|1G1R|A Chain A, Crystal Structure Of P-Selectin LectinEGF DOMAINS Complexed
With Slex
pdb|1G1R|B Chain B, Crystal Structure Of P-Selectin LectinEGF DOMAINS Complexed
With Slex
pdb|1G1R|C Chain C, Crystal Structure Of P-Selectin LectinEGF DOMAINS Complexed
With Slex
pdb|1G1R|D Chain D, Crystal Structure Of P-Selectin LectinEGF DOMAINS Complexed
With Slex
pdb|1G1S|A Chain A, P-selectin Lectin/egf Domains Complexed With Psgl-1 Peptide
pdb|1G1S|B Chain B, P-selectin Lectin/egf Domains Complexed With Psgl-1 Peptide
Length = 162
Score = 36.2 bits (82), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 24/49 (48%)
Query: 976 EGRDCLINTDDCASFPCQNGGTCLDEVGDYSCLCVDGFSGKHCEVDIDE 1024
+ + L T C C G CL+ +G+Y+C C GF G CE D+
Sbjct: 111 KKKHALCYTASCQDMSCSKQGECLETIGNYTCSCYPGFYGPECEYVRDD 159
Score = 35.8 bits (81), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 1093 CESHPCQNDGSCLDDPGTFRCVCMPGFTGTQCETDIDE 1130
C+ C G CL+ G + C C PGF G +CE D+
Sbjct: 122 CQDMSCSKQGECLETIGNYTCSCYPGFYGPECEYVRDD 159
Score = 34.7 bits (78), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 39 SCDSFPCMNGGTCTLKSLDRYTCTCAPGFTGSQCEL 74
SC C G C L+++ YTC+C PGF G +CE
Sbjct: 121 SCQDMSCSKQGEC-LETIGNYTCSCYPGFYGPECEY 155
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 156 CEHDGTCVNTPGSFACNCTQGFTGPRCE 183
C G C+ T G++ C+C GF GP CE
Sbjct: 127 CSKQGECLETIGNYTCSCYPGFYGPECE 154
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 1060 CEHDGTCVNTPGSFACNCTQGFTGPRCE 1087
C G C+ T G++ C+C GF GP CE
Sbjct: 127 CSKQGECLETIGNYTCSCYPGFYGPECE 154
Score = 31.6 bits (70), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 1214 RGECIDGENSFTCACHPGFTGALCNTQLDE 1243
+GEC++ ++TC+C+PGF G C D+
Sbjct: 130 QGECLETIGNYTCSCYPGFYGPECEYVRDD 159
Score = 30.4 bits (67), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 1662 CLPGACHNNGTCVDKVGGFECRCPPGFVG 1690
C +C G C++ +G + C C PGF G
Sbjct: 122 CQDMSCSKQGECLETIGNYTCSCYPGFYG 150
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical
Consensus Repeats
Length = 126
Score = 36.2 bits (82), Expect = 0.19, Method: Composition-based stats.
Identities = 28/102 (27%), Positives = 40/102 (39%), Gaps = 15/102 (14%)
Query: 1830 LINADADINVPDNSGKTALHWXXXXXXXXXXXXLLSHGVN---------------PREGS 1874
L+ A AD+N D +G+T LH LL G + R G
Sbjct: 21 LLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH 80
Query: 1875 YGACKALLDNFANREITDHMDRLPRDVASERLHHDIVRLLDE 1916
K LL+ A+ D R P +A+ H ++V+LL E
Sbjct: 81 LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 122
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical
Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three Identical
Consensus Repeats
Length = 93
Score = 35.8 bits (81), Expect = 0.23, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 18/87 (20%)
Query: 1830 LINADADINVPDNSGKTALHWXXXXXXXXXXXXLLSHGVNPREGSYGACKALLDNFANRE 1889
L+ A AD+N D +G+T LH + R G K LL+ A+
Sbjct: 21 LLEAGADVNAKDKNGRTPLH------------------LAARNGHLEVVKLLLEAGADVN 62
Query: 1890 ITDHMDRLPRDVASERLHHDIVRLLDE 1916
D R P +A+ H ++V+LL E
Sbjct: 63 AKDKNGRTPLHLAARNGHLEVVKLLLE 89
>pdb|3CFW|A Chain A, L-selectin Lectin And Egf Domains
Length = 164
Score = 35.8 bits (81), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 524 CLSNPCSSHGTLDCVQLVNNYHCNCRPGYMGRHCE 558
C CS HG +CV+++NNY CNC GY G C+
Sbjct: 122 CQPWSCSGHG--ECVEIINNYTCNCDVGYYGPQCQ 154
>pdb|2GY5|A Chain A, Tie2 Ligand-Binding Domain Crystal Structure
pdb|2GY7|B Chain B, Angiopoietin-2TIE2 COMPLEX CRYSTAL STRUCTURE
Length = 423
Score = 35.4 bits (80), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 69/185 (37%), Gaps = 38/185 (20%)
Query: 232 SPCQNGGVCRELDNLNYECECQSGYRGKNCEENID-DCPGNLCQNGATCMDGINKYSCLC 290
+ C N GVC E EC C G+ G+ CE+ + G C+ + +G Y
Sbjct: 203 TACMNNGVCHEDTG---ECICPPGFMGRTCEKACELHTFGRTCKERCSGQEGCKSYV--- 256
Query: 291 LATYTGDLCEQDVDECSIRPSVCHNGATCTNSVGGFSC--ICVNGWTGPDCSLNIDDCAG 348
C D CS C G C C G+ GPDC L
Sbjct: 257 -------FCLPDPYGCS-----------CATGWKGLQCNEACHPGFYGPDCKLR------ 292
Query: 349 AACFNGATCIDRVGSFYCQCTPGKTGLLCHLEDACTSNPCHADAICDTNPIINGSYTCSC 408
+C NG C DR C C+PG GL C E P D + D + +G + C
Sbjct: 293 CSCNNGEMC-DRFQG--CLCSPGWQGLQCEREGIPRMTPKIVD-LPDHIEVNSGKFNPIC 348
Query: 409 -ASGY 412
ASG+
Sbjct: 349 KASGW 353
Score = 34.7 bits (78), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 56/152 (36%), Gaps = 34/152 (22%)
Query: 81 SPCRNGAVCTSLEDTYECDCAPGFVGQTCSEDIIECVDDPCVHGECFNTHG--SYTFQMI 138
+ C N VC EDT EC C PGF+G+TC + C G SY F +
Sbjct: 203 TACMNNGVCH--EDTGECICPPGFMGRTCEKACELHTFGRTCKERCSGQEGCKSYVFCL- 259
Query: 139 FIFFTNQYSWFLIAGSPCEHDGTCVNTPGSFACN--CTQGFTGPRCETNVNECESHPCQN 196
P + +C CN C GF GP C+ + C N
Sbjct: 260 ----------------PDPYGCSCATGWKGLQCNEACHPGFYGPDCKLRCS------CNN 297
Query: 197 DGSCLDDPGTFRCVCMCEPGYTGQNCESKYVP 228
C G C+C PG+ G CE + +P
Sbjct: 298 GEMCDRFQG-----CLCSPGWQGLQCEREGIP 324
Score = 34.3 bits (77), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 64/175 (36%), Gaps = 54/175 (30%)
Query: 194 CQNDGSCLDDPGTFRCVCMCEPGYTGQNCES----------------------KYVPCDP 231
C N+G C +D G C+C PG+ G+ CE YV C P
Sbjct: 205 CMNNGVCHEDTGE----CICPPGFMGRTCEKACELHTFGRTCKERCSGQEGCKSYVFCLP 260
Query: 232 SPCQNGGVCRELDNLNYECECQSGYRGKNCEENID------DCPGN-LCQNGATCMDGIN 284
P Y C C +G++G C E DC C NG C +
Sbjct: 261 DP--------------YGCSCATGWKGLQCNEACHPGFYGPDCKLRCSCNNGEMC----D 302
Query: 285 KYS-CLCLATYTGDLCEQDVDECSIRPSVCHNGATCTNSVGGFSCIC-VNGWTGP 337
++ CLC + G CE++ + P + + G F+ IC +GW P
Sbjct: 303 RFQGCLCSPGWQGLQCERE-GIPRMTPKIVDLPDHIEVNSGKFNPICKASGWPLP 356
Score = 33.9 bits (76), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 32/62 (51%), Gaps = 10/62 (16%)
Query: 1637 YTGGYISLNMSTSTLGII----CEINV--PDC--LPGACHNNGTCVDKVGGFECRCPPGF 1688
Y+ YI N+ TS + CE P+C L AC NNG C + G EC CPPGF
Sbjct: 167 YSARYIGGNLFTSAFTRLIVRRCEAQKWGPECNHLCTACMNNGVCHEDTG--ECICPPGF 224
Query: 1689 VG 1690
+G
Sbjct: 225 MG 226
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 60/179 (33%), Gaps = 64/179 (35%)
Query: 1098 CQNDGSCLDDPGTFRCVCMPGFTGTQCETDIDECASNPCLNGGICNDLINTFKCACPIGF 1157
C N+G C +D G C+C PGF G CE + ++TF C
Sbjct: 205 CMNNGVCHEDTG--ECICPPGFMGRTCEKACE----------------LHTFGRTCKERC 246
Query: 1158 TGSHCQINIDDCVSSPCHNGGICKDSIAGYTCECLAGFTGMSCETNINDCASNPCHRGEC 1217
+G + C+ P Y C C G+ G+ C
Sbjct: 247 SGQEGCKSYVFCLPDP-------------YGCSCATGWKGLQCNE--------------- 278
Query: 1218 IDGENSFTCACHPGFTGALCNTQLDECASNPCQFGGQCEDLINGYQCRCKPGTSGTNCE 1276
ACHPGF G C + C+ N G+ D G C C PG G CE
Sbjct: 279 ---------ACHPGFYGPDCKLR---CSCN----NGEMCDRFQG--CLCSPGWQGLQCE 319
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 49/138 (35%), Gaps = 29/138 (21%)
Query: 601 NGGVCTALDGGHTCICPDNYSGRNCEY------FGYDCDSN-----PCQNGGFCRSKEGG 649
N GVC G CICP + GR CE FG C C++ FC
Sbjct: 207 NNGVCHEDTG--ECICPPGFMGRTCEKACELHTFGRTCKERCSGQEGCKSYVFCLPDP-- 262
Query: 650 GYRCDCPPGATGTHCELDSRNECYSNPCQHAGTCE-----DRIADYACYCLPMWNGKNCD 704
Y C C G G C Y C+ +C DR C C P W G C+
Sbjct: 263 -YGCSCATGWKGLQCNEACHPGFYGPDCKLRCSCNNGEMCDRFQ--GCLCSPGWQGLQCE 319
Query: 705 LYDPLFRGGLGRDTKKQI 722
R G+ R T K +
Sbjct: 320 ------REGIPRMTPKIV 331
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 9/59 (15%)
Query: 928 FACHCGVGWTGRYCNEDVD------ECQLSSPCRNGATCHNTNGSYLCECAKGYEGRDC 980
+ C C GW G CNE +C+L C NG C G C C+ G++G C
Sbjct: 263 YGCSCATGWKGLQCNEACHPGFYGPDCKLRCSCNNGEMCDRFQG---CLCSPGWQGLQC 318
Score = 32.3 bits (72), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 44/116 (37%), Gaps = 31/116 (26%)
Query: 1221 ENSFTCACHPGFTGALCNTQLDECASNPCQFGGQCED--------------LINGYQCRC 1266
E++ C C PGF G C E A FG C++ L + Y C C
Sbjct: 213 EDTGECICPPGFMGRTC-----EKACELHTFGRTCKERCSGQEGCKSYVFCLPDPYGCSC 267
Query: 1267 KPGTSGTNCEININECYSNP-------CRNGAKCVDGINRYS-CECLPGYTGLHCE 1314
G G C + + P C NG C +R+ C C PG+ GL CE
Sbjct: 268 ATGWKGLQCNEACHPGFYGPDCKLRCSCNNGEMC----DRFQGCLCSPGWQGLQCE 319
Score = 31.6 bits (70), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 41/99 (41%), Gaps = 23/99 (23%)
Query: 349 AACFNGATCIDRVGSFYCQCTPGKTGLLCHLEDACTSNP--------------CHADAIC 394
AC N C + G C C PG G C E AC + C + C
Sbjct: 203 TACMNNGVCHEDTGE--CICPPGFMGRTC--EKACELHTFGRTCKERCSGQEGCKSYVFC 258
Query: 395 DTNPIINGSYTCSCASGYKGVNCSEDINECEQGINCEIN 433
+P Y CSCA+G+KG+ C+E + G +C++
Sbjct: 259 LPDP-----YGCSCATGWKGLQCNEACHPGFYGPDCKLR 292
Score = 31.6 bits (70), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 50/127 (39%), Gaps = 32/127 (25%)
Query: 1136 CLNGGICNDLINTFKCACPIGFTGSHCQINIDDCVSSPCHN-GGICKDSIAG-------- 1186
C+N G+C++ +T +C CP GF G C+ + H G CK+ +G
Sbjct: 205 CMNNGVCHE--DTGECICPPGFMGRTCEKACE------LHTFGRTCKERCSGQEGCKSYV 256
Query: 1187 ------YTCECLAGFTGMSCETNINDCASNP-------CHRGECIDGENSFTCACHPGFT 1233
Y C C G+ G+ C + P C+ GE D C C PG+
Sbjct: 257 FCLPDPYGCSCATGWKGLQCNEACHPGFYGPDCKLRCSCNNGEMCDRFQG--CLCSPGWQ 314
Query: 1234 GALCNTQ 1240
G C +
Sbjct: 315 GLQCERE 321
>pdb|3M0C|C Chain C, The X-Ray Crystal Structure Of Pcsk9 In Complex With The Ldl
Receptor
Length = 791
Score = 35.0 bits (79), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 37/75 (49%), Gaps = 8/75 (10%)
Query: 1317 INECASNPCA--NGG---VCVDLIDGFKCECPRGY--YDARCLSDVDECASDPCLNGGTC 1369
I EC +N C NGG VC DL G++C CP G+ R D+DEC DP C
Sbjct: 307 IKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDEC-QDPDTCSQLC 365
Query: 1370 EDGLNQFICHCKPGY 1384
+ + C C+ G+
Sbjct: 366 VNLEGGYKCQCEEGF 380
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 33/80 (41%), Gaps = 21/80 (26%)
Query: 88 VCTSLEDTYECDCAPGF--VGQTCSEDIIECVDDPCVHGECFNTHGSYT------FQM-- 137
VC L+ YEC C GF V Q EDI EC D C N G Y FQ+
Sbjct: 325 VCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDP 384
Query: 138 -----------IFIFFTNQY 146
++FFTN++
Sbjct: 385 HTKACKAVGSIAYLFFTNRH 404
>pdb|1N7D|A Chain A, Extracellular Domain Of The Ldl Receptor
Length = 699
Score = 34.7 bits (78), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 37/75 (49%), Gaps = 8/75 (10%)
Query: 1317 INECASNPCA--NGG---VCVDLIDGFKCECPRGY--YDARCLSDVDECASDPCLNGGTC 1369
I EC +N C NGG VC DL G++C CP G+ R D+DEC DP C
Sbjct: 289 IKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDEC-QDPDTCSQLC 347
Query: 1370 EDGLNQFICHCKPGY 1384
+ + C C+ G+
Sbjct: 348 VNLEGGYKCQCEEGF 362
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 56/146 (38%), Gaps = 35/146 (23%)
Query: 27 FSASLCEIPVANSCDSFPCMNGGTCTLKSLDRYTCTCAPGFTGSQCELQDHCASSPC--R 84
+ +LCE P + F C +G TL + C A E C ++ C
Sbjct: 250 VNVTLCEGP-----NKFKCHSGECITLDKV----CNMARDCRDWSDEPIKECGTNECLDN 300
Query: 85 NGA---VCTSLEDTYECDCAPGF--VGQTCSEDIIECVDDPCVHGECFNTHGSYT----- 134
NG VC L+ YEC C GF V Q EDI EC D C N G Y
Sbjct: 301 NGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEE 360
Query: 135 -FQM-------------IFIFFTNQY 146
FQ+ ++FFTN++
Sbjct: 361 GFQLDPHTKACKAVGSIAYLFFTNRH 386
>pdb|1A3P|A Chain A, Role Of The 6-20 Disulfide Bridge In The Structure And
Activity Of Epidermal Growth Factor, Nmr, 20 Structures
Length = 45
Score = 34.7 bits (78), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 45 CMNGGTCT-LKSLDRYTCTCAPGFTGSQCELQD 76
C+NGG ++SLD YTC C G++G +C+ +D
Sbjct: 11 CLNGGVXMHIESLDSYTCNCVIGYSGDRCQTRD 43
Score = 31.2 bits (69), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 8/41 (19%)
Query: 153 GSPCEHDGTCVN--------TPGSFACNCTQGFTGPRCETN 185
G P +DG C+N + S+ CNC G++G RC+T
Sbjct: 2 GXPSSYDGYCLNGGVXMHIESLDSYTCNCVIGYSGDRCQTR 42
Score = 31.2 bits (69), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 8/41 (19%)
Query: 1057 GSPCEHDGTCVN--------TPGSFACNCTQGFTGPRCETN 1089
G P +DG C+N + S+ CNC G++G RC+T
Sbjct: 2 GXPSSYDGYCLNGGVXMHIESLDSYTCNCVIGYSGDRCQTR 42
>pdb|1FSB|A Chain A, Structure Of The Egf Domain Of P-Selectin, Nmr, 19
Structures
Length = 40
Score = 34.7 bits (78), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 984 TDDCASFPCQNGGTCLDEVGDYSCLCVDGFSGKHCE 1019
T C C G CL+ +G+Y+C C GF G CE
Sbjct: 1 TASCQDMSCSKQGECLETIGNYTCSCYPGFYGPECE 36
Score = 34.3 bits (77), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 1093 CESHPCQNDGSCLDDPGTFRCVCMPGFTGTQCE 1125
C+ C G CL+ G + C C PGF G +CE
Sbjct: 4 CQDMSCSKQGECLETIGNYTCSCYPGFYGPECE 36
Score = 32.7 bits (73), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 39 SCDSFPCMNGGTCTLKSLDRYTCTCAPGFTGSQCE 73
SC C G C L+++ YTC+C PGF G +CE
Sbjct: 3 SCQDMSCSKQGEC-LETIGNYTCSCYPGFYGPECE 36
Score = 32.0 bits (71), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 156 CEHDGTCVNTPGSFACNCTQGFTGPRCE 183
C G C+ T G++ C+C GF GP CE
Sbjct: 9 CSKQGECLETIGNYTCSCYPGFYGPECE 36
Score = 32.0 bits (71), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 1060 CEHDGTCVNTPGSFACNCTQGFTGPRCE 1087
C G C+ T G++ C+C GF GP CE
Sbjct: 9 CSKQGECLETIGNYTCSCYPGFYGPECE 36
Score = 30.8 bits (68), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 524 CLSNPCSSHGTLDCVQLVNNYHCNCRPGYMGRHCE 558
C CS G +C++ + NY C+C PG+ G CE
Sbjct: 4 CQDMSCSKQG--ECLETIGNYTCSCYPGFYGPECE 36
>pdb|1Z27|A Chain A, Crystal Structure Of Native Pvs25, An Ookinete Protein
From Plasmodium Vivax.
pdb|1Z3G|A Chain A, Crystal Structure Of Complex Between Pvs25 And Fab
Fragment Of Malaria Transmission Blocking Antibody 2a8
pdb|1Z3G|B Chain B, Crystal Structure Of Complex Between Pvs25 And Fab
Fragment Of Malaria Transmission Blocking Antibody 2a8
Length = 186
Score = 34.7 bits (78), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 44/116 (37%), Gaps = 14/116 (12%)
Query: 873 KPCRHGGTCID-----LVNAYKCVCQVPYTGHDCHQKLDPCVPNRCQHGARCTPS--ANF 925
K C G CI+ VN YKC C YT + LD C C C +
Sbjct: 54 KACGEFGQCIENPDPAQVNMYKCGCIEGYTLKEDTCVLDVCQYKNCGESGECIVEYLSEI 113
Query: 926 QDFACHCGVGWT-----GRYCNEDVD-ECQLSSPCRNGATCHNTNGSYLCECAKGY 975
Q C C +G + C + + CQL N C N G Y C+C +G+
Sbjct: 114 QSAGCSCAIGKVPNPEDEKKCTKTGETACQLKCNTDN-EVCKNVEGVYKCQCMEGF 168
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 34.7 bits (78), Expect = 0.53, Method: Composition-based stats.
Identities = 31/109 (28%), Positives = 43/109 (39%), Gaps = 15/109 (13%)
Query: 1824 DDCASYLINADADINVPDNSGKTALHWXXXXXXXXXXXXLLSHG--VNPRE--------- 1872
DD L+ AD+N D+ G T LH LL HG VN R+
Sbjct: 27 DDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHL 86
Query: 1873 ----GSYGACKALLDNFANREITDHMDRLPRDVASERLHHDIVRLLDEH 1917
G + LL A+ D P +A++R H +IV +L +H
Sbjct: 87 AADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKH 135
>pdb|3ZYJ|B Chain B, Netring1 In Complex With Ngl1
pdb|3ZYJ|D Chain D, Netring1 In Complex With Ngl1
Length = 426
Score = 34.3 bits (77), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 38/102 (37%), Gaps = 6/102 (5%)
Query: 1062 HDGTCVNTPGSFACNCTQGFTGPRCETNVNECESHPCQNDGSCLDDPGTFRCVCMPGFTG 1121
H CV C C TGP C + P + GS L P C+P +
Sbjct: 302 HATVCVYDNSKLTCECEHNTTGPDCGKCKKNYQGRPW-SPGSYLPIPKGAANACIPSISS 360
Query: 1122 TQCETDIDECASNPCLNGGICNDLINTFKCACPIGFTGSHCQ 1163
+E C NGG C+ N +C CP +TG C+
Sbjct: 361 IGTNVCDNELLH--CQNGGTCH---NNVRCLCPAAYTGILCE 397
Score = 31.6 bits (70), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 19/29 (65%), Gaps = 3/29 (10%)
Query: 273 CQNGATCMDGINKYSCLCLATYTGDLCEQ 301
CQNG TC + + CLC A YTG LCE+
Sbjct: 373 CQNGGTCHNNVR---CLCPAAYTGILCEK 398
Score = 30.8 bits (68), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 40/107 (37%), Gaps = 11/107 (10%)
Query: 158 HDGTCVNTPGSFACNCTQGFTGPRCETNVNECESHPCQNDGSCLDDPGTFRCVCMCEPGY 217
H CV C C TGP C + P + GS L P C+
Sbjct: 302 HATVCVYDNSKLTCECEHNTTGPDCGKCKKNYQGRPW-SPGSYLPIPKGAANACIPSISS 360
Query: 218 TGQN-CESKYVPCDPSPCQNGGVCRELDNLNYECECQSGYRGKNCEE 263
G N C+++ + CQNGG C N C C + Y G CE+
Sbjct: 361 IGTNVCDNELL-----HCQNGGTCHN----NVRCLCPAAYTGILCEK 398
>pdb|4DG6|A Chain A, Crystal Structure Of Domains 1 And 2 Of Lrp6
Length = 616
Score = 34.3 bits (77), Expect = 0.67, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 10/60 (16%)
Query: 1305 LPGYTGLHCETNINEC-ASNPCA--NGG---VCVDLIDGFKCECPRGYYDARCLSDVDEC 1358
LP GL TN++ SNPCA NGG +C+ G +C CP G+ +SD+ C
Sbjct: 553 LPDLMGLKA-TNVHRVIGSNPCAEENGGCSHLCLYRPQGLRCACPIGF---ELISDMKTC 608
>pdb|3S94|A Chain A, Crystal Structure Of Lrp6-E1e2
pdb|3S94|B Chain B, Crystal Structure Of Lrp6-E1e2
Length = 619
Score = 34.3 bits (77), Expect = 0.68, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 10/60 (16%)
Query: 1305 LPGYTGLHCETNINEC-ASNPCA--NGG---VCVDLIDGFKCECPRGYYDARCLSDVDEC 1358
LP GL TN++ SNPCA NGG +C+ G +C CP G+ +SD+ C
Sbjct: 561 LPDLMGLKA-TNVHRVIGSNPCAEENGGCSHLCLYRPQGLRCACPIGF---ELISDMKTC 616
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 33.9 bits (76), Expect = 0.96, Method: Composition-based stats.
Identities = 27/102 (26%), Positives = 36/102 (35%), Gaps = 15/102 (14%)
Query: 1830 LINADADINVPDNSGKTALHWXXXXXXXXXXXXLLSHGVN---------------PREGS 1874
L+ A AD+N D G T LH LL G + REG
Sbjct: 54 LLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGH 113
Query: 1875 YGACKALLDNFANREITDHMDRLPRDVASERLHHDIVRLLDE 1916
+ LL A+ D + P D+A H DI +L +
Sbjct: 114 LEIVEVLLKAGADVNAQDKFGKTPFDLAIREGHEDIAEVLQK 155
>pdb|3LAQ|A Chain A, Structure-Based Engineering Of Species Selectivity In The
Upa-Upar Interaction
pdb|3LAQ|B Chain B, Structure-Based Engineering Of Species Selectivity In The
Upa-Upar Interaction
Length = 134
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 637 CQNGGFCRSKE--GGGYRCDCPPGATGTHCELDSRNECY 673
CQNGG C S + RC CP G HCE+D+ CY
Sbjct: 14 CQNGGVCVSYKYFSRIRRCSCPRKFQGEHCEIDASKTCY 52
>pdb|2W2N|E Chain E, Wt Pcsk9-Deltac Bound To Egf-A H306y Mutant Of Ldlr
Length = 107
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 10/72 (13%)
Query: 1132 ASNPCL--NGG---ICNDLINTFKCACPIGF---TGSHCQINIDDCVSSPCHNGGICKDS 1183
+N CL NGG +CNDL ++C CP GF C+ +ID+C P +C +
Sbjct: 28 GTNECLDNNGGCSYVCNDLKIGYECLCPDGFQLVAQRRCE-DIDEC-QDPDTCSQLCVNL 85
Query: 1184 IAGYTCECLAGF 1195
GY C+C GF
Sbjct: 86 EGGYKCQCEEGF 97
Score = 31.2 bits (69), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 9/72 (12%)
Query: 1318 NECASNPCANGG---VCVDLIDGFKCECPRGY--YDARCLSDVDECASDPCLNGGTCEDG 1372
NEC N NGG VC DL G++C CP G+ R D+DEC DP C +
Sbjct: 30 NECLDN---NGGCSYVCNDLKIGYECLCPDGFQLVAQRRCEDIDEC-QDPDTCSQLCVNL 85
Query: 1373 LNQFICHCKPGY 1384
+ C C+ G+
Sbjct: 86 EGGYKCQCEEGF 97
Score = 30.8 bits (68), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 88 VCTSLEDTYECDCAPGF--VGQTCSEDIIECVDDPCVHGECFNTHGSYTFQ 136
VC L+ YEC C GF V Q EDI EC D C N G Y Q
Sbjct: 42 VCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQ 92
>pdb|1HAE|A Chain A, Heregulin-Alpha Epidermal Growth Factor-Like Domain,
Nmr, 20 Structures
pdb|1HAF|A Chain A, Heregulin-Alpha Epidermal Growth Factor-Like Domain,
Nmr, Minimized Average Structure
Length = 63
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 4/32 (12%)
Query: 45 CMNGGTC----TLKSLDRYTCTCAPGFTGSQC 72
C+NGG C L + RY C C PGFTG++C
Sbjct: 14 CVNGGECFMVKDLSNPSRYLCKCQPGFTGARC 45
Score = 31.2 bits (69), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Query: 1092 ECESHPCQNDGSC-----LDDPGTFRCVCMPGFTGTQCETDI 1128
E E C N G C L +P + C C PGFTG +C ++
Sbjct: 8 EKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENV 49
>pdb|2W2M|E Chain E, Wt Pcsk9-Deltac Bound To Wt Egf-A Of Ldlr
pdb|2W2O|E Chain E, Pcsk9-deltac D374y Mutant Bound To Wt Egf-a Of Ldlr
pdb|2W2P|E Chain E, Pcsk9-Deltac D374a Mutant Bound To Wt Egf-A Of Ldlr
pdb|2W2Q|E Chain E, Pcsk9-Deltac D374h Mutant Bound To Wt Egf-A Of Ldlr
Length = 107
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 10/72 (13%)
Query: 1132 ASNPCL--NGG---ICNDLINTFKCACPIGF---TGSHCQINIDDCVSSPCHNGGICKDS 1183
+N CL NGG +CNDL ++C CP GF C+ +ID+C P +C +
Sbjct: 28 GTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCE-DIDEC-QDPDTCSQLCVNL 85
Query: 1184 IAGYTCECLAGF 1195
GY C+C GF
Sbjct: 86 EGGYKCQCEEGF 97
Score = 31.2 bits (69), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 1318 NECASNPCANGGVCVDLIDGFKCECPRGY--YDARCLSDVDECASDPCLNGGTCEDGLNQ 1375
NEC N VC DL G++C CP G+ R D+DEC DP C +
Sbjct: 30 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDEC-QDPDTCSQLCVNLEGG 88
Query: 1376 FICHCKPGY 1384
+ C C+ G+
Sbjct: 89 YKCQCEEGF 97
Score = 31.2 bits (69), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 88 VCTSLEDTYECDCAPGF--VGQTCSEDIIECVDDPCVHGECFNTHGSYTFQ 136
VC L+ YEC C GF V Q EDI EC D C N G Y Q
Sbjct: 42 VCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQ 92
>pdb|1P9J|A Chain A, Solution Structure And Dynamics Of The EgfTGF-Alpha
Chimera T1e
Length = 54
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 45 CMNGGTCT-LKSLDRYTCTCAPGFTGSQCELQD 76
C++ G C +++LD+Y C C G+ G +C+ +D
Sbjct: 16 CLHDGVCMYIEALDKYACNCVVGYIGERCQYRD 48
Score = 31.6 bits (70), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 156 CEHDGTC--VNTPGSFACNCTQGFTGPRCE 183
C HDG C + +ACNC G+ G RC+
Sbjct: 16 CLHDGVCMYIEALDKYACNCVVGYIGERCQ 45
Score = 31.6 bits (70), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 1060 CEHDGTC--VNTPGSFACNCTQGFTGPRCE 1087
C HDG C + +ACNC G+ G RC+
Sbjct: 16 CLHDGVCMYIEALDKYACNCVVGYIGERCQ 45
>pdb|1HRE|A Chain A, Solution Structure Of The Epidermal Growth Factor-Like
Domain Of Heregulin-Alpha, A Ligand For P180erb4
pdb|1HRF|A Chain A, Solution Structure Of The Epidermal Growth Factor-Like
Domain Of Heregulin-Alpha, A Ligand For P180erb4
Length = 67
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 4/32 (12%)
Query: 45 CMNGGTC----TLKSLDRYTCTCAPGFTGSQC 72
C+NGG C L + RY C C PGFTG++C
Sbjct: 16 CVNGGECFMVKDLSNPSRYLCKCQPGFTGARC 47
Score = 31.2 bits (69), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Query: 1092 ECESHPCQNDGSC-----LDDPGTFRCVCMPGFTGTQCETDI 1128
E E C N G C L +P + C C PGFTG +C ++
Sbjct: 10 EKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENV 51
>pdb|1JL9|A Chain A, Crystal Structure Of Human Epidermal Growth Factor
pdb|1JL9|B Chain B, Crystal Structure Of Human Epidermal Growth Factor
Length = 51
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 45 CMNGGTCT-LKSLDRYTCTCAPGFTGSQCELQD 76
C++ G C +++LD+Y C C G+ G +C+ +D
Sbjct: 14 CLHDGVCMYIEALDKYACNCVVGYIGERCQYRD 46
Score = 31.6 bits (70), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 156 CEHDGTC--VNTPGSFACNCTQGFTGPRCE 183
C HDG C + +ACNC G+ G RC+
Sbjct: 14 CLHDGVCMYIEALDKYACNCVVGYIGERCQ 43
Score = 31.6 bits (70), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 1060 CEHDGTC--VNTPGSFACNCTQGFTGPRCE 1087
C HDG C + +ACNC G+ G RC+
Sbjct: 14 CLHDGVCMYIEALDKYACNCVVGYIGERCQ 43
>pdb|1HZ8|A Chain A, Solution Structure And Backbone Dynamics Of A Concatemer Of
Egf-Homology Modules Of The Human Low Density Lipoprotein
Receptor
pdb|1I0U|A Chain A, Solution Structure And Backbone Dynamics Of A Concatemer Of
Egf-Homology Modules Of The Human Low Density Lipoprotein
Receptor
Length = 82
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 10/71 (14%)
Query: 1133 SNPCL--NGG---ICNDLINTFKCACPIGF---TGSHCQINIDDCVSSPCHNGGICKDSI 1184
+N CL NGG +CNDL ++C CP GF C+ +ID+C P +C +
Sbjct: 2 TNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCE-DIDEC-QDPDTCSQLCVNLE 59
Query: 1185 AGYTCECLAGF 1195
GY C+C GF
Sbjct: 60 GGYKCQCEEGF 70
Score = 31.2 bits (69), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 1318 NECASNPCANGGVCVDLIDGFKCECPRGY--YDARCLSDVDECASDPCLNGGTCEDGLNQ 1375
NEC N VC DL G++C CP G+ R D+DEC DP C +
Sbjct: 3 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDEC-QDPDTCSQLCVNLEGG 61
Query: 1376 FICHCKPGY 1384
+ C C+ G+
Sbjct: 62 YKCQCEEGF 70
Score = 31.2 bits (69), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 88 VCTSLEDTYECDCAPGF--VGQTCSEDIIECVDDPCVHGECFNTHGSYTFQ 136
VC L+ YEC C GF V Q EDI EC D C N G Y Q
Sbjct: 15 VCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQ 65
>pdb|3GCW|E Chain E, Pcsk9:egfa(H306y)
Length = 83
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 10/72 (13%)
Query: 1132 ASNPCL--NGG---ICNDLINTFKCACPIGF---TGSHCQINIDDCVSSPCHNGGICKDS 1183
+N CL NGG +CNDL ++C CP GF C+ +ID+C P +C +
Sbjct: 4 GTNECLDNNGGCSYVCNDLKIGYECLCPDGFQLVAQRRCE-DIDEC-QDPDTCSQLCVNL 61
Query: 1184 IAGYTCECLAGF 1195
GY C+C GF
Sbjct: 62 EGGYKCQCEEGF 73
Score = 31.2 bits (69), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 88 VCTSLEDTYECDCAPGF--VGQTCSEDIIECVDDPCVHGECFNTHGSYTFQ 136
VC L+ YEC C GF V Q EDI EC D C N G Y Q
Sbjct: 18 VCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQ 68
Score = 30.8 bits (68), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 9/72 (12%)
Query: 1318 NECASNPCANGG---VCVDLIDGFKCECPRGY--YDARCLSDVDECASDPCLNGGTCEDG 1372
NEC N NGG VC DL G++C CP G+ R D+DEC DP C +
Sbjct: 6 NECLDN---NGGCSYVCNDLKIGYECLCPDGFQLVAQRRCEDIDEC-QDPDTCSQLCVNL 61
Query: 1373 LNQFICHCKPGY 1384
+ C C+ G+
Sbjct: 62 EGGYKCQCEEGF 73
>pdb|3NJP|C Chain C, The Extracellular And Transmembrane Domain Interfaces In
Epidermal Growth Factor Receptor Signaling
pdb|3NJP|D Chain D, The Extracellular And Transmembrane Domain Interfaces In
Epidermal Growth Factor Receptor Signaling
Length = 47
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 45 CMNGGTCT-LKSLDRYTCTCAPGFTGSQCELQD 76
C++ G C +++LD+Y C C G+ G +C+ +D
Sbjct: 10 CLHDGVCMYIEALDKYACNCVVGYIGERCQYRD 42
Score = 31.6 bits (70), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 156 CEHDGTC--VNTPGSFACNCTQGFTGPRCETN 185
C HDG C + +ACNC G+ G RC+
Sbjct: 10 CLHDGVCMYIEALDKYACNCVVGYIGERCQYR 41
Score = 31.6 bits (70), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 1060 CEHDGTC--VNTPGSFACNCTQGFTGPRCETN 1089
C HDG C + +ACNC G+ G RC+
Sbjct: 10 CLHDGVCMYIEALDKYACNCVVGYIGERCQYR 41
>pdb|1HJ7|A Chain A, Nmr Study Of A Pair Of Ldl Receptor Ca2+ Binding Epidermal
Growth Factor-Like Domains, 20 Structures
Length = 80
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 10/71 (14%)
Query: 1133 SNPCL--NGG---ICNDLINTFKCACPIGF---TGSHCQINIDDCVSSPCHNGGICKDSI 1184
+N CL NGG +CNDL ++C CP GF C+ +ID+C P +C +
Sbjct: 2 TNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCE-DIDEC-QDPDTCSQLCVNLE 59
Query: 1185 AGYTCECLAGF 1195
GY C+C GF
Sbjct: 60 GGYKCQCEEGF 70
Score = 31.2 bits (69), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 1318 NECASNPCANGGVCVDLIDGFKCECPRGY--YDARCLSDVDECASDPCLNGGTCEDGLNQ 1375
NEC N VC DL G++C CP G+ R D+DEC DP C +
Sbjct: 3 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDEC-QDPDTCSQLCVNLEGG 61
Query: 1376 FICHCKPGY 1384
+ C C+ G+
Sbjct: 62 YKCQCEEGF 70
Score = 31.2 bits (69), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 88 VCTSLEDTYECDCAPGF--VGQTCSEDIIECVDDPCVHGECFNTHGSYTFQ 136
VC L+ YEC C GF V Q EDI EC D C N G Y Q
Sbjct: 15 VCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQ 65
>pdb|1IVO|C Chain C, Crystal Structure Of The Complex Of Human Epidermal
Growth Factor And Receptor Extracellular Domains.
pdb|1IVO|D Chain D, Crystal Structure Of The Complex Of Human Epidermal
Growth Factor And Receptor Extracellular Domains.
pdb|1NQL|B Chain B, Structure Of The Extracellular Domain Of Human Epidermal
Growth Factor (egf) Receptor In An Inactive (low Ph)
Complex With Egf.
pdb|2KV4|A Chain A, Egf
Length = 53
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 45 CMNGGTCT-LKSLDRYTCTCAPGFTGSQCELQD 76
C++ G C +++LD+Y C C G+ G +C+ +D
Sbjct: 14 CLHDGVCMYIEALDKYACNCVVGYIGERCQYRD 46
Score = 31.6 bits (70), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 156 CEHDGTC--VNTPGSFACNCTQGFTGPRCE 183
C HDG C + +ACNC G+ G RC+
Sbjct: 14 CLHDGVCMYIEALDKYACNCVVGYIGERCQ 43
Score = 31.6 bits (70), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 1060 CEHDGTC--VNTPGSFACNCTQGFTGPRCE 1087
C HDG C + +ACNC G+ G RC+
Sbjct: 14 CLHDGVCMYIEALDKYACNCVVGYIGERCQ 43
>pdb|3BPS|E Chain E, Pcsk9:egf-a Complex
pdb|3GCX|E Chain E, Pcsk9:egfa (Ph 7.4)
Length = 83
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 10/72 (13%)
Query: 1132 ASNPCL--NGG---ICNDLINTFKCACPIGF---TGSHCQINIDDCVSSPCHNGGICKDS 1183
+N CL NGG +CNDL ++C CP GF C+ +ID+C P +C +
Sbjct: 4 GTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCE-DIDEC-QDPDTCSQLCVNL 61
Query: 1184 IAGYTCECLAGF 1195
GY C+C GF
Sbjct: 62 EGGYKCQCEEGF 73
Score = 31.2 bits (69), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 88 VCTSLEDTYECDCAPGF--VGQTCSEDIIECVDDPCVHGECFNTHGSYTFQ 136
VC L+ YEC C GF V Q EDI EC D C N G Y Q
Sbjct: 18 VCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQ 68
Score = 31.2 bits (69), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 1318 NECASNPCANGGVCVDLIDGFKCECPRGY--YDARCLSDVDECASDPCLNGGTCEDGLNQ 1375
NEC N VC DL G++C CP G+ R D+DEC DP C +
Sbjct: 6 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDEC-QDPDTCSQLCVNLEGG 64
Query: 1376 FICHCKPGY 1384
+ C C+ G+
Sbjct: 65 YKCQCEEGF 73
>pdb|3P5B|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE RECEPTOR
IN AN Extended Conformation
Length = 400
Score = 32.3 bits (72), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 10/70 (14%)
Query: 1134 NPCL--NGG---ICNDLINTFKCACPIGF---TGSHCQINIDDCVSSPCHNGGICKDSIA 1185
N CL NGG +CNDL ++C CP GF C+ +ID+C P +C +
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCE-DIDEC-QDPDTCSQLCVNLEG 58
Query: 1186 GYTCECLAGF 1195
GY C+C GF
Sbjct: 59 GYKCQCEEGF 68
Score = 32.3 bits (72), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 33/80 (41%), Gaps = 21/80 (26%)
Query: 88 VCTSLEDTYECDCAPGF--VGQTCSEDIIECVDDPCVHGECFNTHGSYT------FQM-- 137
VC L+ YEC C GF V Q EDI EC D C N G Y FQ+
Sbjct: 13 VCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDP 72
Query: 138 -----------IFIFFTNQY 146
++FFTN++
Sbjct: 73 HTKACKAVGSIAYLFFTNRH 92
Score = 32.0 bits (71), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 36/73 (49%), Gaps = 11/73 (15%)
Query: 1318 NECASNPCANGG---VCVDLIDGFKCECPRGYY---DARCLSDVDECASDPCLNGGTCED 1371
NEC N NGG VC DL G++C CP G+ RC D+DEC DP C +
Sbjct: 1 NECLDN---NGGCSHVCNDLKIGYECLCPDGFQLVAQRRC-EDIDEC-QDPDTCSQLCVN 55
Query: 1372 GLNQFICHCKPGY 1384
+ C C+ G+
Sbjct: 56 LEGGYKCQCEEGF 68
Score = 30.8 bits (68), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 15/67 (22%)
Query: 601 NGG---VCTALDGGHTCICPDNY---SGRNCEYFGYDCDSNPCQNGGFCRS---KEGGGY 651
NGG VC L G+ C+CPD + + R CE D + CQ+ C GGY
Sbjct: 7 NGGCSHVCNDLKIGYECLCPDGFQLVAQRRCE------DIDECQDPDTCSQLCVNLEGGY 60
Query: 652 RCDCPPG 658
+C C G
Sbjct: 61 KCQCEEG 67
>pdb|1Y0N|A Chain A, Structure Of Protein Of Unknown Function Pa3463 From
Pseudomonas Aeruginosa Pao1
Length = 78
Score = 32.3 bits (72), Expect = 2.5, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 1881 LLDNFANREITDHMDRLPRDVASERLHHDIVR 1912
LL++F RE TD+ D P DV ER H + R
Sbjct: 18 LLEDFVTREGTDNGDETPLDVRVERARHALRR 49
>pdb|2WG3|C Chain C, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Desert Hedgehog Without
Calcium
pdb|2WG3|D Chain D, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Desert Hedgehog Without
Calcium
Length = 463
Score = 32.0 bits (71), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 7/53 (13%)
Query: 211 CMCEPGYTGQNCESKYVPCDPSPCQNGGVCRELDNLNYECECQSGYRGKNCEE 263
C C PG+ G C + C+P+ C++GGVC + +C C+ GY G CE+
Sbjct: 410 CCCSPGWEGDFCRT--AKCEPA-CRHGGVCVRPN----KCLCKKGYLGPQCEQ 455
>pdb|2WFX|B Chain B, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Sonic Hedgehog In The
Presence Of Calcium
pdb|2WG4|B Chain B, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Sonic Hedgehog Without
Calcium
Length = 457
Score = 32.0 bits (71), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 7/53 (13%)
Query: 211 CMCEPGYTGQNCESKYVPCDPSPCQNGGVCRELDNLNYECECQSGYRGKNCEE 263
C C PG+ G C + C+P+ C++GGVC + +C C+ GY G CE+
Sbjct: 410 CCCSPGWEGDFCRT--AKCEPA-CRHGGVCVRPN----KCLCKKGYLGPQCEQ 455
>pdb|2WFT|A Chain A, Crystal Structure Of The Human Hip Ectodomain
pdb|2WFT|B Chain B, Crystal Structure Of The Human Hip Ectodomain
Length = 458
Score = 32.0 bits (71), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 7/53 (13%)
Query: 211 CMCEPGYTGQNCESKYVPCDPSPCQNGGVCRELDNLNYECECQSGYRGKNCEE 263
C C PG+ G C + C+P+ C++GGVC + +C C+ GY G CE+
Sbjct: 410 CCCSPGWEGDFCRT--AKCEPA-CRHGGVCVRPN----KCLCKKGYLGPQCEQ 455
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 32.0 bits (71), Expect = 3.1, Method: Composition-based stats.
Identities = 31/106 (29%), Positives = 42/106 (39%), Gaps = 15/106 (14%)
Query: 1824 DDCASYLINADADINVPDNSGKTALHWXXXXXXXXXXXXLL----------SHGVNP--- 1870
DD L+ AD+N D +G T LH LL S GV P
Sbjct: 27 DDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHL 86
Query: 1871 --REGSYGACKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL 1914
R G + LL N A+ +D P +A++R H +IV +L
Sbjct: 87 AARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVL 132
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 31.6 bits (70), Expect = 4.1, Method: Composition-based stats.
Identities = 27/102 (26%), Positives = 40/102 (39%), Gaps = 7/102 (6%)
Query: 1812 KGYEGRDCLI-----NTDDCASYLINADADINVPDNSGKTALHWXXXXXXXXXXXXLLSH 1866
K EG LI N A L++ +++N D SGKT L W LL H
Sbjct: 64 KDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEH 123
Query: 1867 GVNPREGSYGACKALL--DNFANREITDHMDRLPRDVASERL 1906
G N + + L+ + EI + L D+++ L
Sbjct: 124 GANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDL 165
>pdb|3V65|B Chain B, Crystal Structure Of Agrin And Lrp4 Complex
pdb|3V65|D Chain D, Crystal Structure Of Agrin And Lrp4 Complex
Length = 386
Score = 31.6 bits (70), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 930 CHCGVGWT--GRYCNEDVDECQLSSPCRNGATCHNTNGSYLCECAKGYEGR 978
CH G T GR C +DV+EC C G C N+ G++ C C GYE R
Sbjct: 28 CHTGYRLTEDGRTC-QDVNECAEEGYCSQG--CTNSEGAFQCWCEAGYELR 75
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 31.6 bits (70), Expect = 4.9, Method: Composition-based stats.
Identities = 26/102 (25%), Positives = 37/102 (36%), Gaps = 15/102 (14%)
Query: 1830 LINADADINVPDNSGKTALHWXXXXXXXXXXXXLLSHGVN---------------PREGS 1874
L+ A AD+N D G T LH LL G + REG
Sbjct: 54 LLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGH 113
Query: 1875 YGACKALLDNFANREITDHMDRLPRDVASERLHHDIVRLLDE 1916
+ LL A+ D + P D+A + + DI +L +
Sbjct: 114 LEIVEVLLKAGADVNAQDKFGKTPFDLAIDNGNEDIAEVLQK 155
>pdb|1LK9|A Chain A, The Three-Dimensional Structure Of Alliinase From Garlic
pdb|1LK9|B Chain B, The Three-Dimensional Structure Of Alliinase From Garlic
Length = 448
Score = 31.6 bits (70), Expect = 5.0, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 18/39 (46%)
Query: 165 TPGSFACNCTQGFTGPRCETNVNECESHPCQNDGSCLDD 203
+ GS C C +TGP C + C + DG L++
Sbjct: 33 SEGSPKCECNTCYTGPDCSEKIQGCSADVASGDGLFLEE 71
Score = 31.6 bits (70), Expect = 5.0, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 18/39 (46%)
Query: 1069 TPGSFACNCTQGFTGPRCETNVNECESHPCQNDGSCLDD 1107
+ GS C C +TGP C + C + DG L++
Sbjct: 33 SEGSPKCECNTCYTGPDCSEKIQGCSADVASGDGLFLEE 71
>pdb|1PB5|A Chain A, Nmr Structure Of A Prototype Lnr Module From Human Notch1
Length = 35
Score = 31.6 bits (70), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 737 EKCKQNNCRAKAGNHRCDDECNTIACHFDGNDCS 770
E C+ C+ AGN C +CN AC +DG DCS
Sbjct: 2 EACELPECQEDAGNKVCSLQCNNHACGWDGGDCS 35
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 31.2 bits (69), Expect = 5.5, Method: Composition-based stats.
Identities = 28/109 (25%), Positives = 41/109 (37%), Gaps = 15/109 (13%)
Query: 1824 DDCASYLINADADINVPDNSGKTALHWXXXXXXXXXXXXLLSHGVNPRE----------- 1872
DD L+ AD+N DN+G T LH LL HG +
Sbjct: 27 DDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHL 86
Query: 1873 ----GSYGACKALLDNFANREITDHMDRLPRDVASERLHHDIVRLLDEH 1917
G + LL N A+ D P +A++ + +IV +L +H
Sbjct: 87 AAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKH 135
>pdb|2HOR|A Chain A, Crystal Structure Of Alliinase From Garlic- Apo Form
pdb|2HOX|A Chain A, Alliinase From Allium Sativum (Garlic)
pdb|2HOX|B Chain B, Alliinase From Allium Sativum (Garlic)
pdb|2HOX|C Chain C, Alliinase From Allium Sativum (Garlic)
pdb|2HOX|D Chain D, Alliinase From Allium Sativum (Garlic)
Length = 427
Score = 31.2 bits (69), Expect = 5.5, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 18/39 (46%)
Query: 165 TPGSFACNCTQGFTGPRCETNVNECESHPCQNDGSCLDD 203
+ GS C C +TGP C + C + DG L++
Sbjct: 33 SEGSPKCECNTCYTGPDCSEKIQGCSADVASGDGLFLEE 71
Score = 31.2 bits (69), Expect = 5.5, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 18/39 (46%)
Query: 1069 TPGSFACNCTQGFTGPRCETNVNECESHPCQNDGSCLDD 1107
+ GS C C +TGP C + C + DG L++
Sbjct: 33 SEGSPKCECNTCYTGPDCSEKIQGCSADVASGDGLFLEE 71
>pdb|3HO4|A Chain A, Crystal Structure Of Hedgehog-Interacting Protein (Hhip)
pdb|3HO4|B Chain B, Crystal Structure Of Hedgehog-Interacting Protein (Hhip)
Length = 481
Score = 31.2 bits (69), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 7/52 (13%)
Query: 211 CMCEPGYTGQNCESKYVPCDPSPCQNGGVCRELDNLNYECECQSGYRGKNCE 262
C C PG+ G C + C+P+ C++GGVC + +C C+ GY G CE
Sbjct: 431 CCCSPGWEGDFCRT--AKCEPA-CRHGGVCVRPN----KCLCKKGYLGPQCE 475
>pdb|3HO3|A Chain A, Crystal Structure Of Hedgehog-interacting Protein (hhip)
pdb|3HO5|A Chain A, Crystal Structure Of Hedgehog-interacting Protein (hhip)
And Sonic Hedgehog (shh) Complex
pdb|3HO5|B Chain B, Crystal Structure Of Hedgehog-interacting Protein (hhip)
And Sonic Hedgehog (shh) Complex
Length = 481
Score = 31.2 bits (69), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 7/52 (13%)
Query: 211 CMCEPGYTGQNCESKYVPCDPSPCQNGGVCRELDNLNYECECQSGYRGKNCE 262
C C PG+ G C + C+P+ C++GGVC + +C C+ GY G CE
Sbjct: 431 CCCSPGWEGDFCRT--AKCEPA-CRHGGVCVRPN----KCLCKKGYLGPQCE 475
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 30.8 bits (68), Expect = 7.1, Method: Composition-based stats.
Identities = 31/109 (28%), Positives = 41/109 (37%), Gaps = 15/109 (13%)
Query: 1824 DDCASYLINADADINVPDNSGKTALHWXXXXXXXXXXXXLL----------SHGVNP--- 1870
DD L+ AD+N D+ G T LH LL S GV P
Sbjct: 27 DDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHL 86
Query: 1871 --REGSYGACKALLDNFANREITDHMDRLPRDVASERLHHDIVRLLDEH 1917
G + LL N A+ DH P +A+ H +IV +L +H
Sbjct: 87 AADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKH 135
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 30.8 bits (68), Expect = 7.1, Method: Composition-based stats.
Identities = 28/106 (26%), Positives = 38/106 (35%), Gaps = 15/106 (14%)
Query: 1824 DDCASYLINADADINVPDNSGKTALHWXXXXXXXXXXXXLLSHGVN-------------- 1869
DD LI AD+N DN+G T LH LL HG +
Sbjct: 27 DDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHL 86
Query: 1870 -PREGSYGACKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL 1914
G + LL A+ D P +A++ H +IV +L
Sbjct: 87 AAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVL 132
>pdb|1XFE|A Chain A, Solution Structure Of The La7-Egfa Pair From The Ldl
Receptor
Length = 83
Score = 30.8 bits (68), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 22/35 (62%), Gaps = 5/35 (14%)
Query: 1128 IDECASNPCL--NGG---ICNDLINTFKCACPIGF 1157
I EC +N CL NGG +CNDL ++C CP GF
Sbjct: 40 IKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGF 74
>pdb|2FD6|A Chain A, Structure Of Human Urokinase Plasminogen Activator In
Complex With Urokinase Receptor And An Anti-Upar
Antibody At 1.9 A
Length = 122
Score = 30.8 bits (68), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 1 CQNGGTCNVRQSPSYSPSFWCSCPIGFSASLCEIPVANSC 40
C NGGTC + +S WC+CP F CEI + +C
Sbjct: 3 CLNGGTC--VSNKYFSNIHWCNCPKKFGGQHCEIDKSKTC 40
>pdb|1URK|A Chain A, Solution Structure Of The Amino Terminal Fragment Of
Urokinase-Type Plasminogen Activator
Length = 130
Score = 30.8 bits (68), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 1 CQNGGTCNVRQSPSYSPSFWCSCPIGFSASLCEIPVANSC 40
C NGGTC + +S WC+CP F CEI + +C
Sbjct: 8 CLNGGTC--VSNKYFSNIHWCNCPKKFGGQHCEIDKSKTC 45
>pdb|3BT1|A Chain A, Structure Of Urokinase Receptor, Urokinase And
Vitronectin Complex
pdb|3BT2|A Chain A, Structure Of Urokinase Receptor, Urokinase And
Vitronectin Complex
Length = 135
Score = 30.8 bits (68), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 1 CQNGGTCNVRQSPSYSPSFWCSCPIGFSASLCEIPVANSC 40
C NGGTC + +S WC+CP F CEI + +C
Sbjct: 15 CLNGGTC--VSNKYFSNIHWCNCPKKFGGQHCEIDKSKTC 52
>pdb|1NT0|A Chain A, Crystal Structure Of The Cub1-Egf-Cub2 Region Of Masp2
pdb|1NT0|G Chain G, Crystal Structure Of The Cub1-Egf-Cub2 Region Of Masp2
Length = 286
Score = 30.8 bits (68), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 6/46 (13%)
Query: 934 VGWTGRYCNEDVDECQLS----SPCRNGATCHNTNGSYLCECAKGY 975
G+ Y EDVDEC+ S PC + CH G Y C C GY
Sbjct: 109 TGFEAFYAAEDVDECRTSLGDSVPCDH--YCHXYLGGYYCSCRVGY 152
>pdb|3U73|A Chain A, Crystal Structure Of Stabilized Human Upar Mutant In
Complex With Atf
Length = 132
Score = 30.8 bits (68), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 1 CQNGGTCNVRQSPSYSPSFWCSCPIGFSASLCEIPVANSC 40
C NGGTC + +S WC+CP F CEI + +C
Sbjct: 13 CLNGGTC--VSNKYFSNIHWCNCPKKFGGQHCEIDKSKTC 50
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.140 0.496
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,633,747
Number of Sequences: 62578
Number of extensions: 3141817
Number of successful extensions: 10618
Number of sequences better than 100.0: 243
Number of HSP's better than 100.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 123
Number of HSP's that attempted gapping in prelim test: 5629
Number of HSP's gapped (non-prelim): 3874
length of query: 1945
length of database: 14,973,337
effective HSP length: 113
effective length of query: 1832
effective length of database: 7,902,023
effective search space: 14476506136
effective search space used: 14476506136
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)