RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6358
(1945 letters)
>gnl|CDD|191614 pfam06816, NOD, NOTCH protein. NOTCH signalling plays a fundamental
role during a great number of developmental processes in
multicellular animals. NOD and NODP represent a region
present in many NOTCH proteins and NOTCH homologs in
multiple species such as NOTCH2 and NOTCH3, LIN12, SC1
and TAN1. Role of NOD domain remains to be elucidated.
Length = 57
Score = 84.6 bits (210), Expect = 6e-20
Identities = 25/56 (44%), Positives = 34/56 (60%)
Query: 1565 PPSLADGAISIIVLMDMQMFKQNKVSFLRELGHELRATVRIKQEPTGHEMIYQHGG 1620
PP LA+G + I+VL+ + + N V FLREL H LR VR K++ G MI+ G
Sbjct: 1 PPKLAEGTLVIVVLIPPEELRNNSVQFLRELSHLLRTNVRFKKDANGQPMIFPWYG 56
>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate
protein-protein interactions in very diverse families of
proteins. The number of ANK repeats in a protein can
range from 2 to over 20 (ankyrins, for example). ANK
repeats may occur in combinations with other types of
domains. The structural repeat unit contains two
antiparallel helices and a beta-hairpin, repeats are
stacked in a superhelical arrangement; this alignment
contains 4 consecutive repeats.
Length = 126
Score = 78.2 bits (193), Expect = 9e-17
Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 15/106 (14%)
Query: 1824 DDCASYLINADADINVPDNSGKTALHWAAAVNNIDAVNILLSHGVNP------------- 1870
+ L+ AD+N DN G+T LH AA +++ V +LL G +
Sbjct: 20 LEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHL 79
Query: 1871 --REGSYGACKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL 1914
R G+ K LL + A+ D R P +A++ H ++V+LL
Sbjct: 80 AARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLL 125
Score = 61.2 bits (149), Expect = 7e-11
Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 15/95 (15%)
Query: 1838 NVPDNSGKTALHWAAAVNNIDAVNILLSHGVNP---------------REGSYGACKALL 1882
N D G+T LH AA+ +++ V +LL +G + + G K LL
Sbjct: 1 NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLL 60
Query: 1883 DNFANREITDHMDRLPRDVASERLHHDIVRLLDEH 1917
+ A+ D P +A+ + D+V+LL +H
Sbjct: 61 EKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKH 95
Score = 50.8 bits (122), Expect = 3e-07
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 1811 AKGYEGRDCLI-----NTDDCASYLINADADINVPDNSGKTALHWAAAVNNIDAVNILL 1864
A+ +G L D L+ AD+N D G+T LH AA +++ V +LL
Sbjct: 68 ARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL 126
>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies).
Length = 91
Score = 61.1 bits (149), Expect = 3e-11
Identities = 18/52 (34%), Positives = 25/52 (48%)
Query: 1819 CLINTDDCASYLINADADINVPDNSGKTALHWAAAVNNIDAVNILLSHGVNP 1870
+ L+ AD+N D G TALH AA N++ V +LL HG +
Sbjct: 36 ARNGNLEIVKLLLEHGADVNAKDKDGNTALHLAARNGNLEIVKLLLEHGADI 87
Score = 54.6 bits (132), Expect = 6e-09
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 17/83 (20%)
Query: 1825 DCASYLINADADINVPDNSGKTALHWAAAVNNIDAVNILLSHGVNP-------------- 1870
+ L+ AD+N+ D TALH AA N++ V +LL HG +
Sbjct: 11 ELVKLLLEKGADVNLGDTD--TALHLAARNGNLEIVKLLLEHGADVNAKDKDGNTALHLA 68
Query: 1871 -REGSYGACKALLDNFANREITD 1892
R G+ K LL++ A+ + D
Sbjct: 69 ARNGNLEIVKLLLEHGADINLKD 91
Score = 47.2 bits (113), Expect = 2e-06
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 13/83 (15%)
Query: 1848 LHWAAAVNNIDAVNILLSHGVNP-------------REGSYGACKALLDNFANREITDHM 1894
LH AA N++ V +LL G + R G+ K LL++ A+ D
Sbjct: 1 LHLAAKNGNLELVKLLLEKGADVNLGDTDTALHLAARNGNLEIVKLLLEHGADVNAKDKD 60
Query: 1895 DRLPRDVASERLHHDIVRLLDEH 1917
+A+ + +IV+LL EH
Sbjct: 61 GNTALHLAARNGNLEIVKLLLEH 83
>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only].
Length = 235
Score = 64.8 bits (157), Expect = 4e-11
Identities = 27/152 (17%), Positives = 45/152 (29%), Gaps = 23/152 (15%)
Query: 1817 RDCLINTDDCASYLINADADINVPDNSGKTALHWAAAVNN-----IDAVNILLSHGVNPR 1871
D L+ + AD+N D G T LH AA N I+ +LL G +
Sbjct: 79 SAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLD 138
Query: 1872 ------------------EGSYGACKALLDNFANREITDHMDRLPRDVASERLHHDIVRL 1913
G + LL+ A+ + D A++ ++V+L
Sbjct: 139 VNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKL 198
Query: 1914 LDEHIPRSPQMVSVISNGKVTKGGGNNKKINK 1945
L + + + N
Sbjct: 199 LLDKGLHLSLLKFNLEGVANANVSKRNILNLT 230
>gnl|CDD|238011 cd00054, EGF_CA, Calcium-binding EGF-like domain, present in a
large number of membrane-bound and extracellular (mostly
animal) proteins. Many of these proteins require calcium
for their biological function and calcium-binding sites
have been found to be located at the N-terminus of
particular EGF-like domains; calcium-binding may be
crucial for numerous protein-protein interactions. Six
conserved core cysteines form three disulfide bridges as
in non calcium-binding EGF domains, whose structures are
very similar. EGF_CA can be found in tandem repeat
arrangements.
Length = 38
Score = 53.0 bits (128), Expect = 6e-09
Identities = 22/37 (59%), Positives = 26/37 (70%)
Query: 944 DVDECQLSSPCRNGATCHNTNGSYLCECAKGYEGRDC 980
D+DEC +PC+NG TC NT GSY C C GY GR+C
Sbjct: 1 DIDECASGNPCQNGGTCVNTVGSYRCSCPPGYTGRNC 37
Score = 48.8 bits (117), Expect = 1e-07
Identities = 21/38 (55%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
Query: 1278 NINECYS-NPCRNGAKCVDGINRYSCECLPGYTGLHCE 1314
+I+EC S NPC+NG CV+ + Y C C PGYTG +CE
Sbjct: 1 DIDECASGNPCQNGGTCVNTVGSYRCSCPPGYTGRNCE 38
Score = 48.8 bits (117), Expect = 2e-07
Identities = 21/38 (55%), Positives = 30/38 (78%), Gaps = 1/38 (2%)
Query: 1127 DIDECAS-NPCLNGGICNDLINTFKCACPIGFTGSHCQ 1163
DIDECAS NPC NGG C + + +++C+CP G+TG +C+
Sbjct: 1 DIDECASGNPCQNGGTCVNTVGSYRCSCPPGYTGRNCE 38
Score = 48.0 bits (115), Expect = 3e-07
Identities = 23/38 (60%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Query: 1392 DIDECGS-NPCQHGGICTDHLNGYTCECQIGYTGINCE 1428
DIDEC S NPCQ+GG C + + Y C C GYTG NCE
Sbjct: 1 DIDECASGNPCQNGGTCVNTVGSYRCSCPPGYTGRNCE 38
Score = 48.0 bits (115), Expect = 3e-07
Identities = 19/38 (50%), Positives = 29/38 (76%), Gaps = 1/38 (2%)
Query: 1089 NVNECES-HPCQNDGSCLDDPGTFRCVCMPGFTGTQCE 1125
+++EC S +PCQN G+C++ G++RC C PG+TG CE
Sbjct: 1 DIDECASGNPCQNGGTCVNTVGSYRCSCPPGYTGRNCE 38
Score = 46.5 bits (111), Expect = 9e-07
Identities = 21/38 (55%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
Query: 1354 DVDECAS-DPCLNGGTCEDGLNQFICHCKPGYGGKRCE 1390
D+DECAS +PC NGGTC + + + C C PGY G+ CE
Sbjct: 1 DIDECASGNPCQNGGTCVNTVGSYRCSCPPGYTGRNCE 38
Score = 46.1 bits (110), Expect = 2e-06
Identities = 19/37 (51%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 1316 NINECAS-NPCANGGVCVDLIDGFKCECPRGYYDARC 1351
+I+ECAS NPC NGG CV+ + ++C CP GY C
Sbjct: 1 DIDECASGNPCQNGGTCVNTVGSYRCSCPPGYTGRNC 37
Score = 45.3 bits (108), Expect = 3e-06
Identities = 18/38 (47%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 302 DVDECSIRPSVCHNGATCTNSVGGFSCICVNGWTGPDC 339
D+DEC+ + C NG TC N+VG + C C G+TG +C
Sbjct: 1 DIDECA-SGNPCQNGGTCVNTVGSYRCSCPPGYTGRNC 37
Score = 44.9 bits (107), Expect = 3e-06
Identities = 21/38 (55%), Positives = 29/38 (76%), Gaps = 1/38 (2%)
Query: 983 NTDDCASF-PCQNGGTCLDEVGDYSCLCVDGFSGKHCE 1019
+ D+CAS PCQNGGTC++ VG Y C C G++G++CE
Sbjct: 1 DIDECASGNPCQNGGTCVNTVGSYRCSCPPGYTGRNCE 38
Score = 44.9 bits (107), Expect = 4e-06
Identities = 23/40 (57%), Positives = 28/40 (70%), Gaps = 3/40 (7%)
Query: 520 DINECLS-NPCSSHGTLDCVQLVNNYHCNCRPGYMGRHCE 558
DI+EC S NPC + GT CV V +Y C+C PGY GR+CE
Sbjct: 1 DIDECASGNPCQNGGT--CVNTVGSYRCSCPPGYTGRNCE 38
Score = 44.9 bits (107), Expect = 4e-06
Identities = 21/36 (58%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 1242 DECAS-NPCQFGGQCEDLINGYQCRCKPGTSGTNCE 1276
DECAS NPCQ GG C + + Y+C C PG +G NCE
Sbjct: 3 DECASGNPCQNGGTCVNTVGSYRCSCPPGYTGRNCE 38
Score = 44.5 bits (106), Expect = 5e-06
Identities = 21/40 (52%), Positives = 31/40 (77%), Gaps = 3/40 (7%)
Query: 185 NVNECES-HPCQNDGSCLDDPGTFRCVCMCEPGYTGQNCE 223
+++EC S +PCQN G+C++ G++RC C PGYTG+NCE
Sbjct: 1 DIDECASGNPCQNGGTCVNTVGSYRCSCP--PGYTGRNCE 38
Score = 44.2 bits (105), Expect = 6e-06
Identities = 18/38 (47%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Query: 1165 NIDDCVS-SPCHNGGICKDSIAGYTCECLAGFTGMSCE 1201
+ID+C S +PC NGG C +++ Y C C G+TG +CE
Sbjct: 1 DIDECASGNPCQNGGTCVNTVGSYRCSCPPGYTGRNCE 38
Score = 43.0 bits (102), Expect = 2e-05
Identities = 18/31 (58%), Positives = 24/31 (77%)
Query: 153 GSPCEHDGTCVNTPGSFACNCTQGFTGPRCE 183
G+PC++ GTCVNT GS+ C+C G+TG CE
Sbjct: 8 GNPCQNGGTCVNTVGSYRCSCPPGYTGRNCE 38
Score = 43.0 bits (102), Expect = 2e-05
Identities = 18/31 (58%), Positives = 24/31 (77%)
Query: 1057 GSPCEHDGTCVNTPGSFACNCTQGFTGPRCE 1087
G+PC++ GTCVNT GS+ C+C G+TG CE
Sbjct: 8 GNPCQNGGTCVNTVGSYRCSCPPGYTGRNCE 38
Score = 40.3 bits (95), Expect = 2e-04
Identities = 18/37 (48%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 433 NIDDCAFK-PCRHGGTCIDLVNAYKCVCQVPYTGHDC 468
+ID+CA PC++GGTC++ V +Y+C C YTG +C
Sbjct: 1 DIDECASGNPCQNGGTCVNTVGSYRCSCPPGYTGRNC 37
Score = 40.3 bits (95), Expect = 2e-04
Identities = 18/37 (48%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 866 NIDDCAFK-PCRHGGTCIDLVNAYKCVCQVPYTGHDC 901
+ID+CA PC++GGTC++ V +Y+C C YTG +C
Sbjct: 1 DIDECASGNPCQNGGTCVNTVGSYRCSCPPGYTGRNC 37
Score = 39.2 bits (92), Expect = 4e-04
Identities = 20/37 (54%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 342 NIDDCA-GAACFNGATCIDRVGSFYCQCTPGKTGLLC 377
+ID+CA G C NG TC++ VGS+ C C PG TG C
Sbjct: 1 DIDECASGNPCQNGGTCVNTVGSYRCSCPPGYTGRNC 37
Score = 39.2 bits (92), Expect = 5e-04
Identities = 19/38 (50%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 264 NIDDC-PGNLCQNGATCMDGINKYSCLCLATYTGDLCE 300
+ID+C GN CQNG TC++ + Y C C YTG CE
Sbjct: 1 DIDECASGNPCQNGGTCVNTVGSYRCSCPPGYTGRNCE 38
Score = 38.8 bits (91), Expect = 6e-04
Identities = 17/37 (45%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Query: 1203 NINDCAS-NPCHR-GECIDGENSFTCACHPGFTGALC 1237
+I++CAS NPC G C++ S+ C+C PG+TG C
Sbjct: 1 DIDECASGNPCQNGGTCVNTVGSYRCSCPPGYTGRNC 37
Score = 38.4 bits (90), Expect = 8e-04
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 1664 PGACHNNGTCVDKVGGFECRCPPGFVGSR 1692
C N GTCV+ VG + C CPPG+ G
Sbjct: 8 GNPCQNGGTCVNTVGSYRCSCPPGYTGRN 36
Score = 38.0 bits (89), Expect = 0.001
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 76 DHCAS-SPCRNGAVCTSLEDTYECDCAPGFVGQTC 109
D CAS +PC+NG C + +Y C C PG+ G+ C
Sbjct: 3 DECASGNPCQNGGTCVNTVGSYRCSCPPGYTGRNC 37
Score = 37.6 bits (88), Expect = 0.002
Identities = 20/33 (60%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 633 DSNPCQNGGFCRSKEGGGYRCDCPPGATGTHCE 665
NPCQNGG C + G YRC CPPG TG +CE
Sbjct: 7 SGNPCQNGGTCVNTVGS-YRCSCPPGYTGRNCE 38
Score = 36.1 bits (84), Expect = 0.005
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 230 DPSPCQNGGVCRELDNLNYECECQSGYRGKNCE 262
+PCQNGG C +Y C C GY G+NCE
Sbjct: 7 SGNPCQNGGTCVNTVG-SYRCSCPPGYTGRNCE 38
Score = 33.0 bits (76), Expect = 0.058
Identities = 17/35 (48%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 670 NECYS-NPCQHAGTCEDRIADYACYCLPMWNGKNC 703
+EC S NPCQ+ GTC + + Y C C P + G+NC
Sbjct: 3 DECASGNPCQNGGTCVNTVGSYRCSCPPGYTGRNC 37
Score = 33.0 bits (76), Expect = 0.062
Identities = 14/28 (50%), Positives = 22/28 (78%), Gaps = 1/28 (3%)
Query: 1430 NIDDCAFK-PCRHGGTCIDLVNAYKCVC 1456
+ID+CA PC++GGTC++ V +Y+C C
Sbjct: 1 DIDECASGNPCQNGGTCVNTVGSYRCSC 28
Score = 33.0 bits (76), Expect = 0.076
Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 38 NSCDSF-PCMNGGTCTLKSLDRYTCTCAPGFTGSQCE 73
+ C S PC NGGTC ++ Y C+C PG+TG CE
Sbjct: 3 DECASGNPCQNGGTCVN-TVGSYRCSCPPGYTGRNCE 38
Score = 31.8 bits (73), Expect = 0.18
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 601 NGGVCTALDGGHTCICPDNYSGRNCE 626
NGG C G + C CP Y+GRNCE
Sbjct: 13 NGGTCVNTVGSYRCSCPPGYTGRNCE 38
Score = 30.7 bits (70), Expect = 0.48
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 1617 QHGGICTDHLNGYTCECQIGYTG 1639
Q+GG C + + Y C C GYTG
Sbjct: 12 QNGGTCVNTVGSYRCSCPPGYTG 34
Score = 29.9 bits (68), Expect = 0.88
Identities = 19/40 (47%), Positives = 20/40 (50%), Gaps = 8/40 (20%)
Query: 381 DACTS-NPCHADAICDTNPIIN--GSYTCSCASGYKGVNC 417
D C S NPC C +N GSY CSC GY G NC
Sbjct: 3 DECASGNPCQNGGTC-----VNTVGSYRCSCPPGYTGRNC 37
Score = 26.8 bits (60), Expect = 9.1
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Query: 906 DPCV-PNRCQHGARCTPSANFQDFACHCGVGWTGRYC 941
D C N CQ+G C + + C C G+TGR C
Sbjct: 3 DECASGNPCQNGGTCVNTVG--SYRCSCPPGYTGRNC 37
>gnl|CDD|191811 pfam07684, NODP, NOTCH protein. NOTCH signalling plays a fundamental
role during a great number of developmental processes in
multicellular animals. NOD and NODP represent a region
present in many NOTCH proteins and NOTCH homologs in
multiple species such as NOTCH2 and NOTCH3, LIN12, SC1
and TAN1. The role of the NOD and NODP domains remains to
be elucidated.
Length = 62
Score = 51.5 bits (124), Expect = 3e-08
Identities = 20/43 (46%), Positives = 22/43 (51%)
Query: 1695 DAECFSNANEAADFLAASAAAHALSTTFPIYRVRGVSSAEYPP 1737
ECF +A AA FLAA AA L T +PI VR PP
Sbjct: 20 SGECFWSAQSAAAFLAALAAKGGLDTPYPISSVRSEPDEPPPP 62
>gnl|CDD|214542 smart00179, EGF_CA, Calcium-binding EGF-like domain.
Length = 39
Score = 49.9 bits (120), Expect = 6e-08
Identities = 23/38 (60%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
Query: 944 DVDECQLSSPCRNGATCHNTNGSYLCECAKGYE-GRDC 980
D+DEC +PC+NG TC NT GSY CEC GY GR+C
Sbjct: 1 DIDECASGNPCQNGGTCVNTVGSYRCECPPGYTDGRNC 38
Score = 44.9 bits (107), Expect = 4e-06
Identities = 22/39 (56%), Positives = 28/39 (71%), Gaps = 2/39 (5%)
Query: 1278 NINECYS-NPCRNGAKCVDGINRYSCECLPGYT-GLHCE 1314
+I+EC S NPC+NG CV+ + Y CEC PGYT G +CE
Sbjct: 1 DIDECASGNPCQNGGTCVNTVGSYRCECPPGYTDGRNCE 39
Score = 44.5 bits (106), Expect = 5e-06
Identities = 20/34 (58%), Positives = 26/34 (76%), Gaps = 1/34 (2%)
Query: 1316 NINECAS-NPCANGGVCVDLIDGFKCECPRGYYD 1348
+I+ECAS NPC NGG CV+ + ++CECP GY D
Sbjct: 1 DIDECASGNPCQNGGTCVNTVGSYRCECPPGYTD 34
Score = 44.2 bits (105), Expect = 6e-06
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 2/39 (5%)
Query: 1354 DVDECAS-DPCLNGGTCEDGLNQFICHCKPGY-GGKRCE 1390
D+DECAS +PC NGGTC + + + C C PGY G+ CE
Sbjct: 1 DIDECASGNPCQNGGTCVNTVGSYRCECPPGYTDGRNCE 39
Score = 43.8 bits (104), Expect = 9e-06
Identities = 21/39 (53%), Positives = 29/39 (74%), Gaps = 2/39 (5%)
Query: 1127 DIDECAS-NPCLNGGICNDLINTFKCACPIGFT-GSHCQ 1163
DIDECAS NPC NGG C + + +++C CP G+T G +C+
Sbjct: 1 DIDECASGNPCQNGGTCVNTVGSYRCECPPGYTDGRNCE 39
Score = 43.8 bits (104), Expect = 9e-06
Identities = 24/39 (61%), Positives = 27/39 (69%), Gaps = 2/39 (5%)
Query: 1392 DIDECGS-NPCQHGGICTDHLNGYTCECQIGYT-GINCE 1428
DIDEC S NPCQ+GG C + + Y CEC GYT G NCE
Sbjct: 1 DIDECASGNPCQNGGTCVNTVGSYRCECPPGYTDGRNCE 39
Score = 43.8 bits (104), Expect = 1e-05
Identities = 19/39 (48%), Positives = 29/39 (74%), Gaps = 2/39 (5%)
Query: 1089 NVNECES-HPCQNDGSCLDDPGTFRCVCMPGFT-GTQCE 1125
+++EC S +PCQN G+C++ G++RC C PG+T G CE
Sbjct: 1 DIDECASGNPCQNGGTCVNTVGSYRCECPPGYTDGRNCE 39
Score = 42.6 bits (101), Expect = 3e-05
Identities = 22/37 (59%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Query: 1242 DECAS-NPCQFGGQCEDLINGYQCRCKPG-TSGTNCE 1276
DECAS NPCQ GG C + + Y+C C PG T G NCE
Sbjct: 3 DECASGNPCQNGGTCVNTVGSYRCECPPGYTDGRNCE 39
Score = 41.1 bits (97), Expect = 8e-05
Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 302 DVDECSIRPSVCHNGATCTNSVGGFSCICVNGWT-GPDC 339
D+DEC+ + C NG TC N+VG + C C G+T G +C
Sbjct: 1 DIDECA-SGNPCQNGGTCVNTVGSYRCECPPGYTDGRNC 38
Score = 40.3 bits (95), Expect = 2e-04
Identities = 19/39 (48%), Positives = 27/39 (69%), Gaps = 2/39 (5%)
Query: 1165 NIDDCVS-SPCHNGGICKDSIAGYTCECLAGFT-GMSCE 1201
+ID+C S +PC NGG C +++ Y CEC G+T G +CE
Sbjct: 1 DIDECASGNPCQNGGTCVNTVGSYRCECPPGYTDGRNCE 39
Score = 40.3 bits (95), Expect = 2e-04
Identities = 21/39 (53%), Positives = 29/39 (74%), Gaps = 2/39 (5%)
Query: 983 NTDDCASF-PCQNGGTCLDEVGDYSCLCVDGFS-GKHCE 1019
+ D+CAS PCQNGGTC++ VG Y C C G++ G++CE
Sbjct: 1 DIDECASGNPCQNGGTCVNTVGSYRCECPPGYTDGRNCE 39
Score = 39.9 bits (94), Expect = 3e-04
Identities = 23/41 (56%), Positives = 27/41 (65%), Gaps = 4/41 (9%)
Query: 520 DINECLS-NPCSSHGTLDCVQLVNNYHCNCRPGYM-GRHCE 558
DI+EC S NPC + GT CV V +Y C C PGY GR+CE
Sbjct: 1 DIDECASGNPCQNGGT--CVNTVGSYRCECPPGYTDGRNCE 39
Score = 39.5 bits (93), Expect = 3e-04
Identities = 21/41 (51%), Positives = 31/41 (75%), Gaps = 4/41 (9%)
Query: 185 NVNECES-HPCQNDGSCLDDPGTFRCVCMCEPGYT-GQNCE 223
+++EC S +PCQN G+C++ G++RC C PGYT G+NCE
Sbjct: 1 DIDECASGNPCQNGGTCVNTVGSYRCECP--PGYTDGRNCE 39
Score = 38.4 bits (90), Expect = 8e-04
Identities = 18/32 (56%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Query: 153 GSPCEHDGTCVNTPGSFACNCTQGFT-GPRCE 183
G+PC++ GTCVNT GS+ C C G+T G CE
Sbjct: 8 GNPCQNGGTCVNTVGSYRCECPPGYTDGRNCE 39
Score = 38.4 bits (90), Expect = 8e-04
Identities = 18/32 (56%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Query: 1057 GSPCEHDGTCVNTPGSFACNCTQGFT-GPRCE 1087
G+PC++ GTCVNT GS+ C C G+T G CE
Sbjct: 8 GNPCQNGGTCVNTVGSYRCECPPGYTDGRNCE 39
Score = 37.2 bits (87), Expect = 0.002
Identities = 18/38 (47%), Positives = 27/38 (71%), Gaps = 2/38 (5%)
Query: 433 NIDDCAFK-PCRHGGTCIDLVNAYKCVCQVPYT-GHDC 468
+ID+CA PC++GGTC++ V +Y+C C YT G +C
Sbjct: 1 DIDECASGNPCQNGGTCVNTVGSYRCECPPGYTDGRNC 38
Score = 37.2 bits (87), Expect = 0.002
Identities = 18/38 (47%), Positives = 27/38 (71%), Gaps = 2/38 (5%)
Query: 866 NIDDCAFK-PCRHGGTCIDLVNAYKCVCQVPYT-GHDC 901
+ID+CA PC++GGTC++ V +Y+C C YT G +C
Sbjct: 1 DIDECASGNPCQNGGTCVNTVGSYRCECPPGYTDGRNC 38
Score = 37.2 bits (87), Expect = 0.002
Identities = 17/31 (54%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Query: 342 NIDDCA-GAACFNGATCIDRVGSFYCQCTPG 371
+ID+CA G C NG TC++ VGS+ C+C PG
Sbjct: 1 DIDECASGNPCQNGGTCVNTVGSYRCECPPG 31
Score = 36.8 bits (86), Expect = 0.002
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 1664 PGACHNNGTCVDKVGGFECRCPPGFVGSR 1692
C N GTCV+ VG + C CPPG+ R
Sbjct: 8 GNPCQNGGTCVNTVGSYRCECPPGYTDGR 36
Score = 34.5 bits (80), Expect = 0.018
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 1203 NINDCAS-NPCHRG-ECIDGENSFTCACHPGFT 1233
+I++CAS NPC G C++ S+ C C PG+T
Sbjct: 1 DIDECASGNPCQNGGTCVNTVGSYRCECPPGYT 33
Score = 34.1 bits (79), Expect = 0.023
Identities = 14/28 (50%), Positives = 22/28 (78%), Gaps = 1/28 (3%)
Query: 1430 NIDDCAFK-PCRHGGTCIDLVNAYKCVC 1456
+ID+CA PC++GGTC++ V +Y+C C
Sbjct: 1 DIDECASGNPCQNGGTCVNTVGSYRCEC 28
Score = 33.8 bits (78), Expect = 0.031
Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 76 DHCAS-SPCRNGAVCTSLEDTYECDCAPGFV-GQTC 109
D CAS +PC+NG C + +Y C+C PG+ G+ C
Sbjct: 3 DECASGNPCQNGGTCVNTVGSYRCECPPGYTDGRNC 38
Score = 33.8 bits (78), Expect = 0.035
Identities = 19/39 (48%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 264 NIDDC-PGNLCQNGATCMDGINKYSCLCLATYT-GDLCE 300
+ID+C GN CQNG TC++ + Y C C YT G CE
Sbjct: 1 DIDECASGNPCQNGGTCVNTVGSYRCECPPGYTDGRNCE 39
Score = 33.4 bits (77), Expect = 0.043
Identities = 19/34 (55%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Query: 633 DSNPCQNGGFCRSKEGGGYRCDCPPG-ATGTHCE 665
NPCQNGG C + G YRC+CPPG G +CE
Sbjct: 7 SGNPCQNGGTCVNTVGS-YRCECPPGYTDGRNCE 39
Score = 31.8 bits (73), Expect = 0.17
Identities = 17/37 (45%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Query: 670 NECYS-NPCQHAGTCEDRIADYACYCLP-MWNGKNCD 704
+EC S NPCQ+ GTC + + Y C C P +G+NC+
Sbjct: 3 DECASGNPCQNGGTCVNTVGSYRCECPPGYTDGRNCE 39
Score = 30.7 bits (70), Expect = 0.52
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 1617 QHGGICTDHLNGYTCECQIGYTGG 1640
Q+GG C + + Y CEC GYT G
Sbjct: 12 QNGGTCVNTVGSYRCECPPGYTDG 35
Score = 30.3 bits (69), Expect = 0.64
Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 230 DPSPCQNGGVCRELDNLNYECECQSGYR-GKNCE 262
+PCQNGG C +Y CEC GY G+NCE
Sbjct: 7 SGNPCQNGGTCVNTVG-SYRCECPPGYTDGRNCE 39
Score = 27.6 bits (62), Expect = 6.3
Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 38 NSCDSF-PCMNGGTCTLKSLDRYTCTCAPGFT-GSQCE 73
+ C S PC NGGTC ++ Y C C PG+T G CE
Sbjct: 3 DECASGNPCQNGGTCV-NTVGSYRCECPPGYTDGRNCE 39
Score = 27.2 bits (61), Expect = 8.7
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 601 NGGVCTALDGGHTCICPDNYS-GRNCE 626
NGG C G + C CP Y+ GRNCE
Sbjct: 13 NGGTCVNTVGSYRCECPPGYTDGRNCE 39
>gnl|CDD|215688 pfam00066, Notch, LNR domain. The LNR (Lin-12/Notch repeat) domain
is found in three tandem copies in Notch related
proteins. The structure of the domain has been determined
by NMR and was shown to contain three disulphide bonds
and coordinate a calcium ion. Three repeats are also
found in the PAPP-A peptidase.
Length = 38
Score = 47.7 bits (114), Expect = 4e-07
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 1531 IYDAYCQKHYANGHCDYSCNNAECNWDGLDCE 1562
YC+ + +G CD CNNAEC +DG DC
Sbjct: 7 PKAQYCEDKFGDGVCDPECNNAECLFDGGDCS 38
Score = 47.3 bits (113), Expect = 6e-07
Identities = 19/38 (50%), Positives = 23/38 (60%)
Query: 774 NPWINCTANINCWEVFMNGRCDEVCNNPQCLFDGRDCE 811
+PW NC C + F +G CD CNN +CLFDG DC
Sbjct: 1 SPWKNCPKAQYCEDKFGDGVCDPECNNAECLFDGGDCS 38
Score = 47.3 bits (113), Expect = 6e-07
Identities = 19/38 (50%), Positives = 23/38 (60%)
Query: 1485 NPWINCTANINCWEVFMNGRCDEVCNNPQCLFDGRDCE 1522
+PW NC C + F +G CD CNN +CLFDG DC
Sbjct: 1 SPWKNCPKAQYCEDKFGDGVCDPECNNAECLFDGGDCS 38
Score = 42.7 bits (101), Expect = 3e-05
Identities = 16/31 (51%), Positives = 17/31 (54%)
Query: 740 KQNNCRAKAGNHRCDDECNTIACHFDGNDCS 770
K C K G+ CD ECN C FDG DCS
Sbjct: 8 KAQYCEDKFGDGVCDPECNNAECLFDGGDCS 38
Score = 37.3 bits (87), Expect = 0.002
Identities = 14/24 (58%), Positives = 15/24 (62%)
Query: 1458 KAGNHRCDDECNTIACHFDGNDCS 1481
K G+ CD ECN C FDG DCS
Sbjct: 15 KFGDGVCDPECNNAECLFDGGDCS 38
>gnl|CDD|197463 smart00004, NL, Domain found in Notch and Lin-12. The Notch protein
is essential for the proper differentiation of the
Drosophila ectoderm. This protein contains 3 NL domains.
Length = 38
Score = 43.9 bits (104), Expect = 9e-06
Identities = 17/29 (58%), Positives = 19/29 (65%)
Query: 1533 DAYCQKHYANGHCDYSCNNAECNWDGLDC 1561
DA C + +G CD CNNAEC WDG DC
Sbjct: 10 DAQCWDKFGDGVCDEECNNAECLWDGGDC 38
Score = 40.4 bits (95), Expect = 2e-04
Identities = 19/37 (51%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 774 NPWINCTANINCWEVFMNGRCDEVCNNPQCLFDGRDC 810
+PW C CW+ F +G CDE CNN +CL+DG DC
Sbjct: 3 DPWSRCEDA-QCWDKFGDGVCDEECNNAECLWDGGDC 38
Score = 40.4 bits (95), Expect = 2e-04
Identities = 19/37 (51%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 1485 NPWINCTANINCWEVFMNGRCDEVCNNPQCLFDGRDC 1521
+PW C CW+ F +G CDE CNN +CL+DG DC
Sbjct: 3 DPWSRCEDA-QCWDKFGDGVCDEECNNAECLWDGGDC 38
Score = 37.3 bits (87), Expect = 0.002
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 739 CKQNNCRAKAGNHRCDDECNTIACHFDGNDC 769
C+ C K G+ CD+ECN C +DG DC
Sbjct: 8 CEDAQCWDKFGDGVCDEECNNAECLWDGGDC 38
Score = 32.7 bits (75), Expect = 0.077
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 1458 KAGNHRCDDECNTIACHFDGNDC 1480
K G+ CD+ECN C +DG DC
Sbjct: 16 KFGDGVCDEECNNAECLWDGGDC 38
>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional.
Length = 422
Score = 47.4 bits (113), Expect = 6e-05
Identities = 20/50 (40%), Positives = 27/50 (54%)
Query: 1821 INTDDCASYLINADADINVPDNSGKTALHWAAAVNNIDAVNILLSHGVNP 1870
IN + +YL++ IN+ D G T LH+A NN + V LL G NP
Sbjct: 169 INAKNRVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANP 218
Score = 40.0 bits (94), Expect = 0.010
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 1829 YLINADADINVPDNSGKTALHWAAAVNNIDAVNILLSHGVN 1869
YL++ A+ N+ + G T LH A NN + +LL++G +
Sbjct: 210 YLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPS 250
Score = 35.4 bits (82), Expect = 0.31
Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 10/92 (10%)
Query: 1828 SYLINADADINVPDNSGKTALHWAAAVNNIDA--VNILLSHGVNPREGSYGAC---KALL 1882
YL++ A++N+ ++ G+ LH N ID + +L+ GV+ A LL
Sbjct: 125 EYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVD-----INAKNRVNYLL 179
Query: 1883 DNFANREITDHMDRLPRDVASERLHHDIVRLL 1914
I D P A + + V+ L
Sbjct: 180 SYGVPINIKDVYGFTPLHYAVYNNNPEFVKYL 211
Score = 31.9 bits (73), Expect = 3.4
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 1830 LINADADINVPDNSGKTALHWAAA--VNNIDAVNILLSHGVN 1869
L+ A++N PDN+G T L +A + N+ V LL +G N
Sbjct: 92 LLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGAN 133
>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat. Ankyrins are multifunctional
adaptors that link specific proteins to the
membrane-associated, spectrin- actin cytoskeleton. This
repeat-domain is a 'membrane-binding' domain of up to 24
repeated units, and it mediates most of the protein's
binding activities. Repeats 13-24 are especially active,
with known sites of interaction for the Na/K ATPase,
Cl/HCO(3) anion exchanger, voltage-gated sodium channel,
clathrin heavy chain and L1 family cell adhesion
molecules. The ANK repeats are found to form a contiguous
spiral stack such that ion transporters like the anion
exchanger associate in a large central cavity formed by
the ANK repeat spiral, while clathrin and cell adhesion
molecules associate with specific regions outside this
cavity.
Length = 33
Score = 41.0 bits (97), Expect = 7e-05
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 1844 GKTALHWAAAVNNIDAVNILLSHGVNP 1870
G T LH AA +++ V +LL G +
Sbjct: 2 GNTPLHLAARNGHLEVVKLLLEAGADV 28
>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies).
Length = 54
Score = 41.8 bits (99), Expect = 8e-05
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 1825 DCASYLINADADINVPDNSGKTALHWAAAVNNIDAVNILL 1864
+ YL+ DIN D G TALH AA N++ + +LL
Sbjct: 15 ELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54
Score = 34.5 bits (80), Expect = 0.026
Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 18/69 (26%)
Query: 1846 TALHWAAAVNNIDAVNILLSHGVNPREGSYGACKALLDNFANREITDHMDRLPRDVASER 1905
TALH AA ++ V LL GV+ TD +A+E
Sbjct: 3 TALHKAAISGRLELVKYLLEKGVDINR------------------TDEDGNTALHIAAEN 44
Query: 1906 LHHDIVRLL 1914
+ ++++LL
Sbjct: 45 GNLEVLKLL 53
>gnl|CDD|238010 cd00053, EGF, Epidermal growth factor domain, found in epidermal
growth factor (EGF) presents in a large number of
proteins, mostly animal; the list of proteins currently
known to contain one or more copies of an EGF-like
pattern is large and varied; the functional significance
of EGF-like domains in what appear to be unrelated
proteins is not yet clear; a common feature is that
these repeats are found in the extracellular domain of
membrane-bound proteins or in proteins known to be
secreted (exception: prostaglandin G/H synthase); the
domain includes six cysteine residues which have been
shown to be involved in disulfide bonds; the main
structure is a two-stranded beta-sheet followed by a
loop to a C-terminal short two-stranded sheet;
Subdomains between the conserved cysteines vary in
length; the region between the 5th and 6th cysteine
contains two conserved glycines of which at least one
is present in most EGF-like domains; a subset of
these bind calcium.
Length = 36
Score = 40.5 bits (95), Expect = 1e-04
Identities = 19/32 (59%), Positives = 20/32 (62%)
Query: 947 ECQLSSPCRNGATCHNTNGSYLCECAKGYEGR 978
EC S+PC NG TC NT GSY C C GY G
Sbjct: 1 ECAASNPCSNGGTCVNTPGSYRCVCPPGYTGD 32
Score = 37.5 bits (87), Expect = 0.002
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 1663 LPGACHNNGTCVDKVGGFECRCPPGFVGSR 1692
C N GTCV+ G + C CPPG+ G R
Sbjct: 4 ASNPCSNGGTCVNTPGSYRCVCPPGYTGDR 33
Score = 36.3 bits (84), Expect = 0.005
Identities = 18/31 (58%), Positives = 25/31 (80%), Gaps = 1/31 (3%)
Query: 1092 ECE-SHPCQNDGSCLDDPGTFRCVCMPGFTG 1121
EC S+PC N G+C++ PG++RCVC PG+TG
Sbjct: 1 ECAASNPCSNGGTCVNTPGSYRCVCPPGYTG 31
Score = 35.9 bits (83), Expect = 0.007
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 1398 SNPCQHGGICTDHLNGYTCECQIGYTG-INCE 1428
SNPC +GG C + Y C C GYTG +CE
Sbjct: 5 SNPCSNGGTCVNTPGSYRCVCPPGYTGDRSCE 36
Score = 35.5 bits (82), Expect = 0.008
Identities = 18/32 (56%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 1284 SNPCRNGAKCVDGINRYSCECLPGYTG-LHCE 1314
SNPC NG CV+ Y C C PGYTG CE
Sbjct: 5 SNPCSNGGTCVNTPGSYRCVCPPGYTGDRSCE 36
Score = 35.1 bits (81), Expect = 0.010
Identities = 18/30 (60%), Positives = 22/30 (73%)
Query: 152 AGSPCEHDGTCVNTPGSFACNCTQGFTGPR 181
A +PC + GTCVNTPGS+ C C G+TG R
Sbjct: 4 ASNPCSNGGTCVNTPGSYRCVCPPGYTGDR 33
Score = 35.1 bits (81), Expect = 0.010
Identities = 18/30 (60%), Positives = 22/30 (73%)
Query: 1056 AGSPCEHDGTCVNTPGSFACNCTQGFTGPR 1085
A +PC + GTCVNTPGS+ C C G+TG R
Sbjct: 4 ASNPCSNGGTCVNTPGSYRCVCPPGYTGDR 33
Score = 35.1 bits (81), Expect = 0.011
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 1171 SSPCHNGGICKDSIAGYTCECLAGFTG-MSCE 1201
S+PC NGG C ++ Y C C G+TG SCE
Sbjct: 5 SNPCSNGGTCVNTPGSYRCVCPPGYTGDRSCE 36
Score = 35.1 bits (81), Expect = 0.012
Identities = 18/36 (50%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Query: 1130 ECA-SNPCLNGGICNDLINTFKCACPIGFTGS-HCQ 1163
ECA SNPC NGG C + +++C CP G+TG C+
Sbjct: 1 ECAASNPCSNGGTCVNTPGSYRCVCPPGYTGDRSCE 36
Score = 34.8 bits (80), Expect = 0.013
Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 991 PCQNGGTCLDEVGDYSCLCVDGFSG-KHCE 1019
PC NGGTC++ G Y C+C G++G + CE
Sbjct: 7 PCSNGGTCVNTPGSYRCVCPPGYTGDRSCE 36
Score = 34.8 bits (80), Expect = 0.015
Identities = 18/33 (54%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 1319 ECA-SNPCANGGVCVDLIDGFKCECPRGYYDAR 1350
ECA SNPC+NGG CV+ ++C CP GY R
Sbjct: 1 ECAASNPCSNGGTCVNTPGSYRCVCPPGYTGDR 33
Score = 34.8 bits (80), Expect = 0.016
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 305 ECSIRPSVCHNGATCTNSVGGFSCICVNGWTGP 337
EC+ + C NG TC N+ G + C+C G+TG
Sbjct: 1 ECA-ASNPCSNGGTCVNTPGSYRCVCPPGYTGD 32
Score = 34.0 bits (78), Expect = 0.032
Identities = 19/36 (52%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 1357 ECA-SDPCLNGGTCEDGLNQFICHCKPGY-GGKRCE 1390
ECA S+PC NGGTC + + C C PGY G + CE
Sbjct: 1 ECAASNPCSNGGTCVNTPGSYRCVCPPGYTGDRSCE 36
Score = 33.2 bits (76), Expect = 0.061
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 1243 ECA-SNPCQFGGQCEDLINGYQCRCKPGTSG-TNCE 1276
ECA SNPC GG C + Y+C C PG +G +CE
Sbjct: 1 ECAASNPCSNGGTCVNTPGSYRCVCPPGYTGDRSCE 36
Score = 32.1 bits (73), Expect = 0.13
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 79 ASSPCRNGAVCTSLEDTYECDCAPGFVGQT 108
AS+PC NG C + +Y C C PG+ G
Sbjct: 4 ASNPCSNGGTCVNTPGSYRCVCPPGYTGDR 33
Score = 32.1 bits (73), Expect = 0.15
Identities = 21/38 (55%), Positives = 28/38 (73%), Gaps = 4/38 (10%)
Query: 188 ECE-SHPCQNDGSCLDDPGTFRCVCMCEPGYTGQ-NCE 223
EC S+PC N G+C++ PG++RCVC PGYTG +CE
Sbjct: 1 ECAASNPCSNGGTCVNTPGSYRCVCP--PGYTGDRSCE 36
Score = 31.3 bits (71), Expect = 0.30
Identities = 20/34 (58%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 633 DSNPCQNGGFCRSKEGGGYRCDCPPGATG-THCE 665
SNPC NGG C + G YRC CPPG TG CE
Sbjct: 4 ASNPCSNGGTCVNTPGS-YRCVCPPGYTGDRSCE 36
Score = 30.9 bits (70), Expect = 0.38
Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 1208 ASNPCHR-GECIDGENSFTCACHPGFTG 1234
ASNPC G C++ S+ C C PG+TG
Sbjct: 4 ASNPCSNGGTCVNTPGSYRCVCPPGYTG 31
Score = 30.9 bits (70), Expect = 0.39
Identities = 19/35 (54%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Query: 525 LSNPCSSHGTLDCVQLVNNYHCNCRPGYMG-RHCE 558
SNPCS+ GT CV +Y C C PGY G R CE
Sbjct: 4 ASNPCSNGGT--CVNTPGSYRCVCPPGYTGDRSCE 36
Score = 30.5 bits (69), Expect = 0.44
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 351 CFNGATCIDRVGSFYCQCTPGKTG 374
C NG TC++ GS+ C C PG TG
Sbjct: 8 CSNGGTCVNTPGSYRCVCPPGYTG 31
Score = 30.5 bits (69), Expect = 0.56
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 441 PCRHGGTCIDLVNAYKCVCQVPYTG 465
PC +GGTC++ +Y+CVC YTG
Sbjct: 7 PCSNGGTCVNTPGSYRCVCPPGYTG 31
Score = 30.5 bits (69), Expect = 0.56
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 874 PCRHGGTCIDLVNAYKCVCQVPYTG 898
PC +GGTC++ +Y+CVC YTG
Sbjct: 7 PCSNGGTCVNTPGSYRCVCPPGYTG 31
Score = 29.8 bits (67), Expect = 1.1
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 271 NLCQNGATCMDGINKYSCLCLATYTGD 297
N C NG TC++ Y C+C YTGD
Sbjct: 6 NPCSNGGTCVNTPGSYRCVCPPGYTGD 32
Score = 29.4 bits (66), Expect = 1.5
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 1617 QHGGICTDHLNGYTCECQIGYTG 1639
+GG C + Y C C GYTG
Sbjct: 9 SNGGTCVNTPGSYRCVCPPGYTG 31
Score = 29.0 bits (65), Expect = 1.9
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 230 DPSPCQNGGVCRELDNLNYECECQSGYRG-KNCE 262
+PC NGG C +Y C C GY G ++CE
Sbjct: 4 ASNPCSNGGTCVNTPG-SYRCVCPPGYTGDRSCE 36
Score = 27.8 bits (62), Expect = 4.1
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 44 PCMNGGTCTLKSLDRYTCTCAPGFTGS 70
PC NGGTC + Y C C PG+TG
Sbjct: 7 PCSNGGTCVN-TPGSYRCVCPPGYTGD 32
Score = 27.4 bits (61), Expect = 6.3
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 1438 PCRHGGTCIDLVNAYKCVCAK--AGNHRC 1464
PC +GGTC++ +Y+CVC G+ C
Sbjct: 7 PCSNGGTCVNTPGSYRCVCPPGYTGDRSC 35
Score = 27.1 bits (60), Expect = 9.2
Identities = 14/33 (42%), Positives = 14/33 (42%), Gaps = 3/33 (9%)
Query: 384 TSNPCHADAICDTNPIINGSYTCSCASGYKGVN 416
SNPC C P GSY C C GY G
Sbjct: 4 ASNPCSNGGTCVNTP---GSYRCVCPPGYTGDR 33
>gnl|CDD|197603 smart00248, ANK, ankyrin repeats. Ankyrin repeats are about 33 amino
acids long and occur in at least four consecutive copies.
They are involved in protein-protein interactions. The
core of the repeat seems to be an helix-loop-helix
structure.
Length = 30
Score = 39.1 bits (92), Expect = 3e-04
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 1844 GKTALHWAAAVNNIDAVNILLSHGVNP 1870
G+T LH AA N++ V +LL G +
Sbjct: 2 GRTPLHLAAENGNLEVVKLLLDKGADI 28
>gnl|CDD|219496 pfam07645, EGF_CA, Calcium-binding EGF domain.
Length = 42
Score = 39.6 bits (93), Expect = 3e-04
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 302 DVDECSIRPSVCHNGATCTNSVGGFSCICVNGWT 335
DVDEC+ C C N++G F C+C +G+
Sbjct: 1 DVDECADGTHNCPANTVCVNTIGSFECVCPDGYE 34
Score = 33.1 bits (76), Expect = 0.066
Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 944 DVDEC-QLSSPCRNGATCHNTNGSYLCECAKGYE 976
DVDEC + C C NT GS+ C C GYE
Sbjct: 1 DVDECADGTHNCPANTVCVNTIGSFECVCPDGYE 34
Score = 31.9 bits (73), Expect = 0.15
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 1667 CHNNGTCVDKVGGFECRCPPGF 1688
C N CV+ +G FEC CP G+
Sbjct: 12 CPANTVCVNTIGSFECVCPDGY 33
Score = 31.6 bits (72), Expect = 0.23
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 1317 INECAS--NPCANGGVCVDLIDGFKCECPRGY 1346
++ECA + C VCV+ I F+C CP GY
Sbjct: 2 VDECADGTHNCPANTVCVNTIGSFECVCPDGY 33
Score = 31.6 bits (72), Expect = 0.27
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 1090 VNECES--HPCQNDGSCLDDPGTFRCVCMPGFT 1120
V+EC H C + C++ G+F CVC G+
Sbjct: 2 VDECADGTHNCPANTVCVNTIGSFECVCPDGYE 34
Score = 28.5 bits (64), Expect = 3.0
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 1127 DIDECAS--NPCLNGGICNDLINTFKCACPIGFT 1158
D+DECA + C +C + I +F+C CP G+
Sbjct: 1 DVDECADGTHNCPANTVCVNTIGSFECVCPDGYE 34
Score = 27.7 bits (62), Expect = 6.2
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 186 VNECES--HPCQNDGSCLDDPGTFRCVCM 212
V+EC H C + C++ G+F CVC
Sbjct: 2 VDECADGTHNCPANTVCVNTIGSFECVCP 30
Score = 27.3 bits (61), Expect = 6.8
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 6/41 (14%)
Query: 1241 LDECAS--NPCQFGGQCEDLINGYQCRCKPG----TSGTNC 1275
+DECA + C C + I ++C C G GTNC
Sbjct: 2 VDECADGTHNCPANTVCVNTIGSFECVCPDGYENNEDGTNC 42
Score = 27.3 bits (61), Expect = 7.1
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 984 TDDCASFP--CQNGGTCLDEVGDYSCLCVDGFSGK 1016
D+CA C C++ +G + C+C DG+
Sbjct: 2 VDECADGTHNCPANTVCVNTIGSFECVCPDGYENN 36
Score = 27.3 bits (61), Expect = 8.3
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 1392 DIDEC--GSNPCQHGGICTDHLNGYTCECQIGYT 1423
D+DEC G++ C +C + + + C C GY
Sbjct: 1 DVDECADGTHNCPANTVCVNTIGSFECVCPDGYE 34
>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat. Ankyrins are multifunctional
adaptors that link specific proteins to the
membrane-associated, spectrin- actin cytoskeleton. This
repeat-domain is a 'membrane-binding' domain of up to 24
repeated units, and it mediates most of the protein's
binding activities.
Length = 30
Score = 36.8 bits (86), Expect = 0.003
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 1844 GKTALHWAAAVNNIDAVNILLSHGVNP 1870
G T LH AA N++ V +LL HG +
Sbjct: 2 GNTPLHLAARNGNLELVKLLLEHGADI 28
>gnl|CDD|215652 pfam00008, EGF, EGF-like domain. There is no clear separation
between noise and signal. pfam00053 is very similar, but
has 8 instead of 6 conserved cysteines. Includes some
cytokine receptors. The EGF domain misses the N-terminus
regions of the Ca2+ binding EGF domains (this is the main
reason of discrepancy between swiss-prot domain start/end
and Pfam). The family is hard to model due to many
similar but different sub-types of EGF domains. Pfam
certainly misses a number of EGF domains.
Length = 32
Score = 36.3 bits (84), Expect = 0.003
Identities = 17/28 (60%), Positives = 18/28 (64%)
Query: 1399 NPCQHGGICTDHLNGYTCECQIGYTGIN 1426
NPC +GG C D GYTCEC GYTG
Sbjct: 5 NPCSNGGTCVDTPGGYTCECPEGYTGKR 32
Score = 34.7 bits (80), Expect = 0.016
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 1134 NPCLNGGICNDLINTFKCACPIGFTGSH 1161
NPC NGG C D + C CP G+TG
Sbjct: 5 NPCSNGGTCVDTPGGYTCECPEGYTGKR 32
Score = 34.3 bits (79), Expect = 0.020
Identities = 15/27 (55%), Positives = 20/27 (74%)
Query: 155 PCEHDGTCVNTPGSFACNCTQGFTGPR 181
PC + GTCV+TPG + C C +G+TG R
Sbjct: 6 PCSNGGTCVDTPGGYTCECPEGYTGKR 32
Score = 34.3 bits (79), Expect = 0.020
Identities = 15/27 (55%), Positives = 20/27 (74%)
Query: 1059 PCEHDGTCVNTPGSFACNCTQGFTGPR 1085
PC + GTCV+TPG + C C +G+TG R
Sbjct: 6 PCSNGGTCVDTPGGYTCECPEGYTGKR 32
Score = 34.3 bits (79), Expect = 0.021
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 990 FPCQNGGTCLDEVGDYSCLCVDGFSGKH 1017
PC NGGTC+D G Y+C C +G++GK
Sbjct: 5 NPCSNGGTCVDTPGGYTCECPEGYTGKR 32
Score = 33.9 bits (78), Expect = 0.027
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 948 CQLSSPCRNGATCHNTNGSYLCECAKGYEGR 978
C ++PC NG TC +T G Y CEC +GY G+
Sbjct: 1 CSPNNPCSNGGTCVDTPGGYTCECPEGYTGK 31
Score = 33.9 bits (78), Expect = 0.031
Identities = 15/27 (55%), Positives = 16/27 (59%)
Query: 1362 PCLNGGTCEDGLNQFICHCKPGYGGKR 1388
PC NGGTC D + C C GY GKR
Sbjct: 6 PCSNGGTCVDTPGGYTCECPEGYTGKR 32
Score = 33.6 bits (77), Expect = 0.033
Identities = 16/28 (57%), Positives = 17/28 (60%)
Query: 1285 NPCRNGAKCVDGINRYSCECLPGYTGLH 1312
NPC NG CVD Y+CEC GYTG
Sbjct: 5 NPCSNGGTCVDTPGGYTCECPEGYTGKR 32
Score = 33.2 bits (76), Expect = 0.043
Identities = 15/26 (57%), Positives = 17/26 (65%)
Query: 1667 CHNNGTCVDKVGGFECRCPPGFVGSR 1692
C N GTCVD GG+ C CP G+ G R
Sbjct: 7 CSNGGTCVDTPGGYTCECPEGYTGKR 32
Score = 32.8 bits (75), Expect = 0.073
Identities = 16/25 (64%), Positives = 18/25 (72%)
Query: 1173 PCHNGGICKDSIAGYTCECLAGFTG 1197
PC NGG C D+ GYTCEC G+TG
Sbjct: 6 PCSNGGTCVDTPGGYTCECPEGYTG 30
Score = 32.0 bits (73), Expect = 0.13
Identities = 17/28 (60%), Positives = 19/28 (67%)
Query: 1323 NPCANGGVCVDLIDGFKCECPRGYYDAR 1350
NPC+NGG CVD G+ CECP GY R
Sbjct: 5 NPCSNGGTCVDTPGGYTCECPEGYTGKR 32
Score = 31.3 bits (71), Expect = 0.23
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 440 KPCRHGGTCIDLVNAYKCVCQVPYTGH 466
PC +GGTC+D Y C C YTG
Sbjct: 5 NPCSNGGTCVDTPGGYTCECPEGYTGK 31
Score = 31.3 bits (71), Expect = 0.23
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 873 KPCRHGGTCIDLVNAYKCVCQVPYTGH 899
PC +GGTC+D Y C C YTG
Sbjct: 5 NPCSNGGTCVDTPGGYTCECPEGYTGK 31
Score = 31.3 bits (71), Expect = 0.25
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 313 CHNGATCTNSVGGFSCICVNGWTGP 337
C NG TC ++ GG++C C G+TG
Sbjct: 7 CSNGGTCVDTPGGYTCECPEGYTGK 31
Score = 30.5 bits (69), Expect = 0.53
Identities = 14/25 (56%), Positives = 15/25 (60%)
Query: 1617 QHGGICTDHLNGYTCECQIGYTGGY 1641
+GG C D GYTCEC GYTG
Sbjct: 8 SNGGTCVDTPGGYTCECPEGYTGKR 32
Score = 30.1 bits (68), Expect = 0.55
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 269 PGNLCQNGATCMDGINKYSCLCLATYTGD 297
P N C NG TC+D Y+C C YTG
Sbjct: 3 PNNPCSNGGTCVDTPGGYTCECPEGYTGK 31
Score = 30.1 bits (68), Expect = 0.55
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 1096 HPCQNDGSCLDDPGTFRCVCMPGFTG 1121
+PC N G+C+D PG + C C G+TG
Sbjct: 5 NPCSNGGTCVDTPGGYTCECPEGYTG 30
Score = 30.1 bits (68), Expect = 0.68
Identities = 16/29 (55%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 633 DSNPCQNGGFCRSKEGGGYRCDCPPGATG 661
+NPC NGG C GGY C+CP G TG
Sbjct: 3 PNNPCSNGGTCVDT-PGGYTCECPEGYTG 30
Score = 29.7 bits (67), Expect = 0.74
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 82 PCRNGAVCTSLEDTYECDCAPGFVGQT 108
PC NG C Y C+C G+ G+
Sbjct: 6 PCSNGGTCVDTPGGYTCECPEGYTGKR 32
Score = 29.3 bits (66), Expect = 1.1
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 41 DSFPCMNGGTCTLKSLDRYTCTCAPGFTGSQ 71
+ PC NGGTC + + YTC C G+TG +
Sbjct: 3 PNNPCSNGGTC-VDTPGGYTCECPEGYTGKR 32
Score = 28.9 bits (65), Expect = 1.6
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 351 CFNGATCIDRVGSFYCQCTPGKTG 374
C NG TC+D G + C+C G TG
Sbjct: 7 CSNGGTCVDTPGGYTCECPEGYTG 30
Score = 28.9 bits (65), Expect = 1.9
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 192 HPCQNDGSCLDDPGTFRCVCMCEPGYTGQN 221
+PC N G+C+D PG + C C GYTG+
Sbjct: 5 NPCSNGGTCVDTPGGYT--CECPEGYTGKR 32
Score = 28.6 bits (64), Expect = 1.9
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 1210 NPC-HRGECIDGENSFTCACHPGFTG 1234
NPC + G C+D +TC C G+TG
Sbjct: 5 NPCSNGGTCVDTPGGYTCECPEGYTG 30
Score = 28.2 bits (63), Expect = 3.1
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 1247 NPCQFGGQCEDLINGYQCRCKPGTSG 1272
NPC GG C D GY C C G +G
Sbjct: 5 NPCSNGGTCVDTPGGYTCECPEGYTG 30
Score = 27.0 bits (60), Expect = 7.1
Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 230 DPSPCQNGGVCRELDNLNYECECQSGYRGKN 260
+PC NGG C + Y CEC GY GK
Sbjct: 3 PNNPCSNGGTCVDTPG-GYTCECPEGYTGKR 32
Score = 27.0 bits (60), Expect = 9.1
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 675 NPCQHAGTCEDRIADYACYCLPMWNGKN 702
NPC + GTC D Y C C + GK
Sbjct: 5 NPCSNGGTCVDTPGGYTCECPEGYTGKR 32
>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies).
Length = 56
Score = 36.9 bits (86), Expect = 0.004
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 1830 LINADADINVPDNSGKTALHWAAAVNNIDAVNILLSHGVNPR 1871
L + D+N D +G T LH AA ++ V LL GV+
Sbjct: 2 LEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLN 43
Score = 31.2 bits (71), Expect = 0.48
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 1825 DCASYLINADADINVPDNSGKTALHWA 1851
+ +L+ D+N+ D+ G TAL A
Sbjct: 30 ELVQWLLKPGVDLNLRDSDGLTALDLA 56
>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional.
Length = 477
Score = 41.4 bits (97), Expect = 0.004
Identities = 31/108 (28%), Positives = 49/108 (45%), Gaps = 23/108 (21%)
Query: 1830 LINADADINVPD-NSGKTALHWAAAVNNIDAVNILLSHGVNP---------------REG 1873
L++ ADIN+ D + G TALH+A + +LLS+G N +
Sbjct: 153 LLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHY 212
Query: 1874 SYGACKALLDNFANREITDHMDR---LPRDVASER-LHHDIVRLLDEH 1917
+ LL+N A+ TD D+ P ++ +DI++LL EH
Sbjct: 213 NKPIVHILLENGAS---TDARDKCGNTPLHISVGYCKDYDILKLLLEH 257
Score = 31.0 bits (70), Expect = 6.4
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 1830 LINADADINVPDNSGKTALHWAAA-VNNIDAVNILLSHGVNPREGSY 1875
L+ A + D G T LH + + D + +LL HGV+ SY
Sbjct: 220 LLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSY 266
>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional.
Length = 471
Score = 40.4 bits (95), Expect = 0.009
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 1822 NTDDCASYLINADADINVPDNSGKTALHWAAAVNNIDA--VNILLSHGVNPRE 1872
T D LI A AD+N D G+T LH + NI+ + +LL G +
Sbjct: 95 TTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNA 147
Score = 38.5 bits (90), Expect = 0.038
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 1830 LINADADINVPDNSGKTALHWAAAVNNIDAVNILLSHGVNP 1870
L+ A IN + G+T LH+AA NN A L++ G +
Sbjct: 243 LLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIALGADI 283
Score = 34.2 bits (79), Expect = 0.65
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 1830 LINADADINVPDNSGKTALHWAAAVNN-IDAVNILLSHGVN 1869
L+ A AD+N P+ G T LH +D + +L+ G +
Sbjct: 69 LLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGAD 109
Score = 33.8 bits (78), Expect = 0.93
Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Query: 1829 YLINADADINVPDNSGKTALHWAAAVNNIDA--VNILLSHGVNPRE 1872
L+ AD+N D G T L N + + +L+ G +
Sbjct: 137 LLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYA 182
Score = 31.5 bits (72), Expect = 4.7
Identities = 16/44 (36%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 1822 NTDDCASYLINADADINVPDNSGKTALHWAAAVNNIDAVNILLS 1865
N C LI ADIN + G T L NN AV L+
Sbjct: 269 NPRACR-RLIALGADINAVSSDGNTPLSLMVRNNNGRAVRAALA 311
>gnl|CDD|214544 smart00181, EGF, Epidermal growth factor-like domain.
Length = 35
Score = 34.0 bits (78), Expect = 0.024
Identities = 18/32 (56%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 947 ECQLSSPCRNGATCHNTNGSYLCECAKGYEGR 978
EC PC NG TC NT GSY C C GY G
Sbjct: 1 ECASGGPCSNG-TCINTPGSYTCSCPPGYTGD 31
Score = 33.3 bits (76), Expect = 0.052
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 1209 SNPCHRGECIDGENSFTCACHPGFTG 1234
PC G CI+ S+TC+C PG+TG
Sbjct: 5 GGPCSNGTCINTPGSYTCSCPPGYTG 30
Score = 30.6 bits (69), Expect = 0.40
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 1670 NGTCVDKVGGFECRCPPGFVGSRW 1693
NGTC++ G + C CPPG+ G +
Sbjct: 10 NGTCINTPGSYTCSCPPGYTGDKR 33
Score = 29.8 bits (67), Expect = 0.91
Identities = 19/32 (59%), Positives = 24/32 (75%), Gaps = 2/32 (6%)
Query: 153 GSPCEHDGTCVNTPGSFACNCTQGFTG-PRCE 183
G PC + GTC+NTPGS+ C+C G+TG RCE
Sbjct: 5 GGPCSN-GTCINTPGSYTCSCPPGYTGDKRCE 35
Score = 29.8 bits (67), Expect = 0.91
Identities = 19/32 (59%), Positives = 24/32 (75%), Gaps = 2/32 (6%)
Query: 1057 GSPCEHDGTCVNTPGSFACNCTQGFTG-PRCE 1087
G PC + GTC+NTPGS+ C+C G+TG RCE
Sbjct: 5 GGPCSN-GTCINTPGSYTCSCPPGYTGDKRCE 35
Score = 29.4 bits (66), Expect = 1.3
Identities = 16/31 (51%), Positives = 22/31 (70%), Gaps = 2/31 (6%)
Query: 1092 ECES-HPCQNDGSCLDDPGTFRCVCMPGFTG 1121
EC S PC N G+C++ PG++ C C PG+TG
Sbjct: 1 ECASGGPCSN-GTCINTPGSYTCSCPPGYTG 30
Score = 28.3 bits (63), Expect = 3.5
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 305 ECSIRPSVCHNGATCTNSVGGFSCICVNGWTG 336
EC+ C NG TC N+ G ++C C G+TG
Sbjct: 1 ECAS-GGPCSNG-TCINTPGSYTCSCPPGYTG 30
Score = 27.9 bits (62), Expect = 3.7
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 1319 ECAS-NPCANGGVCVDLIDGFKCECPRGYYDAR 1350
ECAS PC+NG C++ + C CP GY +
Sbjct: 1 ECASGGPCSNG-TCINTPGSYTCSCPPGYTGDK 32
Score = 27.9 bits (62), Expect = 3.7
Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 1398 SNPCQHGGICTDHLNGYTCECQIGYTG 1424
PC +G C + YTC C GYTG
Sbjct: 5 GGPCSNG-TCINTPGSYTCSCPPGYTG 30
Score = 27.5 bits (61), Expect = 5.7
Identities = 20/36 (55%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 1357 ECAS-DPCLNGGTCEDGLNQFICHCKPGY-GGKRCE 1390
ECAS PC NG TC + + C C PGY G KRCE
Sbjct: 1 ECASGGPCSNG-TCINTPGSYTCSCPPGYTGDKRCE 35
Score = 27.5 bits (61), Expect = 6.1
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 1130 ECAS-NPCLNGGICNDLINTFKCACPIGFTGS 1160
ECAS PC NG C + ++ C+CP G+TG
Sbjct: 1 ECASGGPCSNG-TCINTPGSYTCSCPPGYTGD 31
Score = 27.1 bits (60), Expect = 8.6
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 991 PCQNGGTCLDEVGDYSCLCVDGFSG-KHCE 1019
PC NG TC++ G Y+C C G++G K CE
Sbjct: 7 PCSNG-TCINTPGSYTCSCPPGYTGDKRCE 35
Score = 27.1 bits (60), Expect = 8.9
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 1284 SNPCRNGAKCVDGINRYSCECLPGYTG 1310
PC NG C++ Y+C C PGYTG
Sbjct: 5 GGPCSNG-TCINTPGSYTCSCPPGYTG 30
Score = 26.7 bits (59), Expect = 9.6
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 1171 SSPCHNGGICKDSIAGYTCECLAGFTGM 1198
PC NG C ++ YTC C G+TG
Sbjct: 5 GGPCSNG-TCINTPGSYTCSCPPGYTGD 31
>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional.
Length = 823
Score = 39.1 bits (91), Expect = 0.028
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 1830 LINADADINVPDNSGKTALHWAAAVNNIDAVNILLSHGVN 1869
L+ A D ++ D+ G+T LH AA+ D V +LL H N
Sbjct: 544 LLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACN 583
Score = 39.1 bits (91), Expect = 0.029
Identities = 31/117 (26%), Positives = 45/117 (38%), Gaps = 22/117 (18%)
Query: 1811 AKGYEGRDCLINTDDCASYLINADADINVPDNSGKTALHWAAAVNNIDAVNIL--LSHGV 1868
+KGYE DC L+ ++++ D +G TAL A + + IL +
Sbjct: 567 SKGYE---------DCVLVLLKHACNVHIRDANGNTALWNAISAKHHKIFRILYHFASIS 617
Query: 1869 NP-----------REGSYGACKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL 1914
+P + A K LL N + DH VA H D+VRLL
Sbjct: 618 DPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLL 674
Score = 31.0 bits (70), Expect = 7.5
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 8/72 (11%)
Query: 1796 SLENTERNGSYLCECAKGYEGRDCLINTDDCASYLINADADINVPDNSGKTALHWAAAVN 1855
S+ + G LC AK N L+ +++ D+ G TAL A A +
Sbjct: 615 SISDPHAAGDLLCTAAKR--------NDLTAMKELLKQGLNVDSEDHQGATALQVAMAED 666
Query: 1856 NIDAVNILLSHG 1867
++D V +L+ +G
Sbjct: 667 HVDMVRLLIMNG 678
>gnl|CDD|140343 PTZ00322, PTZ00322,
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase;
Provisional.
Length = 664
Score = 38.3 bits (89), Expect = 0.045
Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 18/88 (20%)
Query: 1830 LINADADINVPDNSGKTALHWAAAVNNIDAVNILLSHGVNPREGSYGACKALLDNFANRE 1889
L+ AD N D G+T LH A A ++ V +LL G +P
Sbjct: 101 LLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADP------------------T 142
Query: 1890 ITDHMDRLPRDVASERLHHDIVRLLDEH 1917
+ D + P ++A E ++V+LL H
Sbjct: 143 LLDKDGKTPLELAEENGFREVVQLLSRH 170
>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional.
Length = 682
Score = 36.2 bits (83), Expect = 0.22
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 1827 ASYLINADADINVPDNSGKTALHWAAAVNNIDAVNILLSHGVN 1869
A L+ AD+N D T +H+AA N VN+LLS+G +
Sbjct: 161 AEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGAD 203
Score = 33.5 bits (76), Expect = 1.3
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 1825 DCASYLINADADINVPDNSGKTALHWAAAVNNIDAVNILLSHGVN 1869
D L+ A++N D KT +H+AA NN+ +N LL +G +
Sbjct: 356 DIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGAD 400
>gnl|CDD|205157 pfam12947, EGF_3, EGF domain. This family includes a variety of
EGF-like domain homologues. This family includes the
C-terminal domain of the malaria parasite MSP1 protein.
Length = 36
Score = 30.6 bits (70), Expect = 0.44
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 306 CSIRPSVCHNGATCTNSVGGFSCICVNGWTG 336
C+ CH ATCTN+ G F+C C +G+TG
Sbjct: 1 CAENNGGCHPNATCTNTGGSFTCTCKSGYTG 31
Score = 29.0 bits (66), Expect = 1.5
Identities = 12/20 (60%), Positives = 13/20 (65%)
Query: 958 ATCHNTNGSYLCECAKGYEG 977
ATC NT GS+ C C GY G
Sbjct: 12 ATCTNTGGSFTCTCKSGYTG 31
Score = 29.0 bits (66), Expect = 1.6
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 5/34 (14%)
Query: 383 CTSNP--CHADAICDTNPIINGSYTCSCASGYKG 414
C N CH +A C GS+TC+C SGY G
Sbjct: 1 CAENNGGCHPNATCTNTG---GSFTCTCKSGYTG 31
Score = 29.0 bits (66), Expect = 1.7
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 1664 PGACHNNGTCVDKVGGFECRCPPGFVG 1690
G CH N TC + G F C C G+ G
Sbjct: 5 NGGCHPNATCTNTGGSFTCTCKSGYTG 31
Score = 28.7 bits (65), Expect = 2.5
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 155 PCEHDGTCVNTPGSFACNCTQGFTG 179
C + TC NT GSF C C G+TG
Sbjct: 7 GCHPNATCTNTGGSFTCTCKSGYTG 31
Score = 28.7 bits (65), Expect = 2.5
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 1059 PCEHDGTCVNTPGSFACNCTQGFTG 1083
C + TC NT GSF C C G+TG
Sbjct: 7 GCHPNATCTNTGGSFTCTCKSGYTG 31
Score = 27.9 bits (63), Expect = 4.0
Identities = 13/35 (37%), Positives = 15/35 (42%), Gaps = 4/35 (11%)
Query: 1200 CETNINDCASNPCHRGECIDGENSFTCACHPGFTG 1234
C N C N C + SFTC C G+TG
Sbjct: 1 CAENNGGCHPN----ATCTNTGGSFTCTCKSGYTG 31
>gnl|CDD|215728 pfam00115, COX1, Cytochrome C and Quinol oxidase polypeptide I.
Length = 441
Score = 34.9 bits (81), Expect = 0.49
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 6/50 (12%)
Query: 1734 EYPPI--DSPANVKYVLMGVFLMMLVGLLLG---VLVTTQRKRSHGITWF 1778
EYPP+ S + V ++G+ L+ +G LLG +VT ++R+ G+T
Sbjct: 115 EYPPLSSTSSSPVDLWILGLLLV-GIGSLLGAINFIVTILKRRAPGMTLS 163
>gnl|CDD|218955 pfam06247, Plasmod_Pvs28, Plasmodium ookinete surface protein Pvs28.
This family consists of several ookinete surface protein
(Pvs28) from several species of Plasmodium. Pvs25 and
Pvs28 are expressed on the surface of ookinetes. These
proteins are potential candidates for vaccine and induce
antibodies that block the infectivity of Plasmodium vivax
in immunised animals.
Length = 196
Score = 33.6 bits (77), Expect = 0.68
Identities = 33/151 (21%), Positives = 53/151 (35%), Gaps = 17/151 (11%)
Query: 1064 GTCVNTPGSFACNCTQGFT-------GPRCETNVNECESHPCQNDGSCLDD-----PGTF 1111
G + F C C +G+ + + + E + C +C++
Sbjct: 11 GYLIQMSNHFECKCNEGYVLKNENTCEEKVKCDKLENVNKVCGEYATCINQANKAEEKAL 70
Query: 1112 RCVCMPGFTGTQCETDIDECASNPCLNGGICNDLINTFK--CACPIGFTG---SHCQINI 1166
+C C+ G+T +Q ++C + C +G D N C+C IG C
Sbjct: 71 KCGCINGYTLSQGVCVPNKCNNKVCGSGKCIVDPANPNNTTCSCNIGKVPDQNGKCTKTG 130
Query: 1167 DDCVSSPCHNGGICKDSIAGYTCECLAGFTG 1197
+ S C CK Y C C GF G
Sbjct: 131 ETKCSLKCKENEECKLVGGYYECVCKEGFPG 161
Score = 32.8 bits (75), Expect = 1.00
Identities = 36/150 (24%), Positives = 53/150 (35%), Gaps = 26/150 (17%)
Query: 1147 NTFKCACPIGFTGSHCQINIDDC-----------VSSPCHNGGIC-----KDSIAGYTCE 1190
N F+C C G+ N + C V+ C C K C
Sbjct: 18 NHFECKCNEGYV----LKNENTCEEKVKCDKLENVNKVCGEYATCINQANKAEEKALKCG 73
Query: 1191 CLAGFTGMSCETNINDCASNPCHRGECI---DGENSFTCACHPGFTG---ALCNTQLDEC 1244
C+ G+T N C + C G+CI N+ TC+C+ G C +
Sbjct: 74 CINGYTLSQGVCVPNKCNNKVCGSGKCIVDPANPNNTTCSCNIGKVPDQNGKCTKTGETK 133
Query: 1245 ASNPCQFGGQCEDLINGYQCRCKPGTSGTN 1274
S C+ +C+ + Y+C CK G G
Sbjct: 134 CSLKCKENEECKLVGGYYECVCKEGFPGDG 163
Score = 30.5 bits (69), Expect = 6.6
Identities = 34/155 (21%), Positives = 55/155 (35%), Gaps = 18/155 (11%)
Query: 1287 CRNGAKCVDGINRYSCECLPGYTGLHCET--NINECAS-----NPCANGGVCVDLIDG-- 1337
C+NG + N + C+C GY + T +C C C++ +
Sbjct: 8 CKNG-YLIQMSNHFECKCNEGYVLKNENTCEEKVKCDKLENVNKVCGEYATCINQANKAE 66
Query: 1338 ---FKCECPRGYYDARCLSDVDECASDPCLNGGTCEDGLNQF--ICHCKPGY---GGKRC 1389
KC C GY ++ + ++C + C +G D N C C G +C
Sbjct: 67 EKALKCGCINGYTLSQGVCVPNKCNNKVCGSGKCIVDPANPNNTTCSCNIGKVPDQNGKC 126
Query: 1390 EFDIDECGSNPCQHGGICTDHLNGYTCECQIGYTG 1424
+ S C+ C Y C C+ G+ G
Sbjct: 127 TKTGETKCSLKCKENEECKLVGGYYECVCKEGFPG 161
>gnl|CDD|238752 cd01475, vWA_Matrilin, VWA_Matrilin: In cartilaginous plate,
extracellular matrix molecules mediate cell-matrix and
matrix-matrix interactions thereby providing tissue
integrity. Some members of the matrilin family are
expressed specifically in developing cartilage
rudiments. The matrilin family consists of at least four
members. All the members of the matrilin family contain
VWA domains, EGF-like domains and a heptad repeat
coiled-coiled domain at the carboxy terminus which is
responsible for the oligomerization of the matrilins.
The VWA domains have been shown to be essential for
matrilin network formation by interacting with matrix
ligands.
Length = 224
Score = 33.1 bits (76), Expect = 0.91
Identities = 10/23 (43%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
Query: 156 CEHDGTCVNTPGSFACNCTQGFT 178
C+ C++TPGS+ C CT+G+
Sbjct: 197 CQQ--VCISTPGSYLCACTEGYA 217
Score = 33.1 bits (76), Expect = 0.91
Identities = 10/23 (43%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
Query: 1060 CEHDGTCVNTPGSFACNCTQGFT 1082
C+ C++TPGS+ C CT+G+
Sbjct: 197 CQQ--VCISTPGSYLCACTEGYA 217
Score = 31.2 bits (71), Expect = 4.1
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 5/34 (14%)
Query: 948 CQLSSPCRNGA-----TCHNTNGSYLCECAKGYE 976
C + C + C +T GSYLC C +GY
Sbjct: 184 CVVPDLCATLSHVCQQVCISTPGSYLCACTEGYA 217
>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional.
Length = 434
Score = 33.8 bits (77), Expect = 0.96
Identities = 29/145 (20%), Positives = 57/145 (39%), Gaps = 24/145 (16%)
Query: 1824 DDCASYLINADADINVPDNSGKTALHWAAAVNNIDAVNILLSHGVN-------------- 1869
D +++ D+N+ D KT LH+A +++++ +L +G +
Sbjct: 104 KDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHI 163
Query: 1870 -PREGSYGACKALLDNFANREITDHMDRLPRDVASERLHHDIVRLLDEHIPR-------- 1920
+ + K LL+ A + D+ P A+E + ++LL +H
Sbjct: 164 AIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNG 223
Query: 1921 -SPQMVSVISNGKVTKGGGNNKKIN 1944
+P ++I N + NN IN
Sbjct: 224 FTPLHNAIIHNRSAIELLINNASIN 248
Score = 30.7 bits (69), Expect = 8.9
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 1822 NTDDCASYLINADADINVPDNSGKTALHWAAAVNNIDAVNILLSHGVN 1869
N D L+ A NV DN+G++ LH AA + + +L+ HG +
Sbjct: 168 NFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNH 215
>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional.
Length = 413
Score = 33.8 bits (77), Expect = 0.97
Identities = 30/105 (28%), Positives = 44/105 (41%), Gaps = 24/105 (22%)
Query: 1830 LINADADINVPDNSGKTALHWAAAVNNIDAVNILLSH----------GVNP-----REGS 1874
LI AD ++P+ + LH A + +I + +L+ H G P +G
Sbjct: 121 LIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGD 180
Query: 1875 YGACKALLDNFANREITDHMDRLPRDVAS-----ERLHHDIVRLL 1914
CK LLD+ AN D+ + VA+ E DIVRL
Sbjct: 181 IAICKMLLDSGAN---IDYFGKNG-CVAALCYAIENNKIDIVRLF 221
>gnl|CDD|233329 TIGR01245, trpD, anthranilate phosphoribosyltransferase. In many
widely different species, including E. coli, Thermotoga
maritima, and Archaeoglobus fulgidus, this enzymatic
domain (anthranilate phosphoribosyltransferase) is found
C-terminal to glutamine amidotransferase; the fusion
protein is designated anthranilate synthase component II
(EC 4.1.3.27) [Amino acid biosynthesis, Aromatic amino
acid family].
Length = 330
Score = 33.4 bits (77), Expect = 1.1
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 1737 PIDSPANVKYVLMGVFLMMLVGLLLGVLVTTQRKRS---HG 1774
P+ +PA KY ++GV+ LV ++ L KR+ HG
Sbjct: 176 PLTNPARPKYQVIGVYDPDLVEVMAEALKNLGVKRALVVHG 216
>gnl|CDD|222954 PHA02989, PHA02989, ankyrin repeat protein; Provisional.
Length = 494
Score = 32.8 bits (75), Expect = 2.2
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 1821 INTDDCASYLINADADIN-VPDNSGKTALH--WAAAVNNIDAVNILLSHGVNPRE 1872
IN D +L++ ++N V ++ G LH + D + ILLS GVN E
Sbjct: 121 INNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFE 175
>gnl|CDD|239451 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type II) chaperonin
family, alpha subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 527
Score = 32.6 bits (75), Expect = 2.6
Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 27/74 (36%)
Query: 1816 GRDCLINTDDCA-----SYLINADAD------------INVPDNSGKTALHWAAAVNNID 1858
G++ LIN A S +I AD+D + + GKT I
Sbjct: 136 GKESLIN---VAKTSMSSKIIGADSDFFANMVVDAILAVKTTNEKGKT-------KYPIK 185
Query: 1859 AVNILLSHGVNPRE 1872
AVNIL +HG + +E
Sbjct: 186 AVNILKAHGKSAKE 199
>gnl|CDD|177148 MTH00079, COX1, cytochrome c oxidase subunit I; Provisional.
Length = 508
Score = 32.3 bits (74), Expect = 2.9
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Query: 1729 GVSSAEYPPIDSPANVKYVL-MGVFLMMLVGL--LLG---VLVTTQRKRSHGITW 1777
G S YPP+ + + + + +F + G+ +LG +VTT+ RS I+
Sbjct: 124 GTSWTVYPPLSTLGHPGSSVDLAIFSLHCAGISSILGGINFMVTTKNLRSSSISL 178
>gnl|CDD|234682 PRK00188, trpD, anthranilate phosphoribosyltransferase; Provisional.
Length = 339
Score = 31.6 bits (73), Expect = 4.1
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 1737 PIDSPANVKYVLMGVFLMMLVGLLLGVLVTTQRKRS---HG 1774
P+ +PA K L+GV+ L+ + VL KR+ HG
Sbjct: 180 PLTNPARPKRQLIGVYSPDLLEPMAEVLKRLGSKRALVVHG 220
>gnl|CDD|165256 PHA02946, PHA02946, ankyin-like protein; Provisional.
Length = 446
Score = 31.6 bits (71), Expect = 4.4
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 1838 NVPDNSGKTALHWAAAVNNIDAVNILLSHGVNP 1870
N D+ G LH A+ +NN V +LL+HG +P
Sbjct: 66 NETDDDGNYPLHIASKINNNRIVAMLLTHGADP 98
>gnl|CDD|221695 pfam12662, cEGF, Complement Clr-like EGF-like. cEGF, or complement
Clr-like EGF, domains have six conserved cysteine
residues disulfide-bonded into the characteristic
pattern 'ababcc'. They are found in blood coagulation
proteins such as fibrillin, Clr and Cls, thrombomodulin,
and the LDL receptor. The core fold of the EGF domain
consists of two small beta-hairpins packed against each
other. Two major structural variants have been
identified based on the structural context of the
C-terminal cysteine residue of disulfide 'c' in the
C-terminal hairpin: hEGFs and cEGFs. In cEGFs the
C-terminal thiol resides on the C-terminal beta-sheet,
resulting in long loop-lengths between the cysteine
residues of disulfide 'c', typically C[10+]XC. These
longer loop-lengths may have arisen by selective
cysteine loss from a four-disulfide EGF template such as
laminin or integrin. Tandem cEGF domains have five
linking residues between terminal cysteines of adjacent
domains. cEGF domains may or may not bind calcium in the
linker region. cEGF domains with the consensus motif
CXN4X[F,Y]XCXC are hydroxylated exclusively on the
asparagine residue.
Length = 24
Score = 27.4 bits (62), Expect = 5.3
Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 5/25 (20%)
Query: 403 SYTCSCASGYK----GVNCSEDINE 423
SYTCSC GY+ G C EDI+E
Sbjct: 1 SYTCSCPPGYQLSGDGRTC-EDIDE 24
>gnl|CDD|238012 cd00055, EGF_Lam, Laminin-type epidermal growth factor-like domain;
laminins are the major noncollagenous components of
basement membranes that mediate cell adhesion, growth
migration, and differentiation; the laminin-type
epidermal growth factor-like module occurs in tandem
arrays; the domain contains 4 disulfide bonds (loops
a-d) the first three resemble epidermal growth factor
(EGF); the number of copies of this domain in the
different forms of laminins is highly variable ranging
from 3 up to 22 copies.
Length = 50
Score = 27.7 bits (62), Expect = 6.8
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 528 PCSSHGTLDCVQLVNNYHCNCRPGYMGRHCE 558
C+ HG+L C C+P GR C+
Sbjct: 3 DCNGHGSLSGQCDPGTGQCECKPNTTGRRCD 33
>gnl|CDD|165098 PHA02730, PHA02730, ankyrin-like protein; Provisional.
Length = 672
Score = 31.1 bits (70), Expect = 7.7
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 1836 DINVPDNSGKTALHWAAAVNNIDAVNILLSHGVN 1869
DI++ DN KT L++A VNNI LL +G +
Sbjct: 454 DIDMIDNENKTLLYYAVDVNNIQFARRLLEYGAS 487
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.139 0.489
Gapped
Lambda K H
0.267 0.0820 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 93,290,402
Number of extensions: 8713028
Number of successful extensions: 6471
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6343
Number of HSP's successfully gapped: 436
Length of query: 1945
Length of database: 10,937,602
Length adjustment: 111
Effective length of query: 1834
Effective length of database: 6,014,308
Effective search space: 11030240872
Effective search space used: 11030240872
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 67 (29.4 bits)