BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6361
(148 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor
Length = 403
Score = 49.7 bits (117), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 23/107 (21%)
Query: 41 LKDLLYVTRNGS-FVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKDEQQESV 99
L+ Y GS +I+N+ + D+ YTC V+ + S + ++ VLVPP+F
Sbjct: 264 LRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVPPWF-------- 315
Query: 100 AIVVNHPMNI----------SCSHYGVPTPDFSWYKDGSLLRIQSHY 136
+NHP N+ C+ G P P +W K+G ++ I S Y
Sbjct: 316 ---LNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVV-IPSDY 358
Score = 35.4 bits (80), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/102 (21%), Positives = 45/102 (44%), Gaps = 6/102 (5%)
Query: 45 LYVTRNGSFVINNIAEKDTNVYTCTVSNAAGS-TSKTIQMNVLVPPFFKDE----QQESV 99
+ V +G+ I+ + D+ VY C+ N A + T ++ +L P + Q+ S
Sbjct: 171 VVVLPSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSN 230
Query: 100 AIVVNHPMNI-SCSHYGVPTPDFSWYKDGSLLRIQSHYITFF 140
I + + C G P P F+W + +++++S +
Sbjct: 231 VIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLL 272
Score = 33.1 bits (74), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 8/103 (7%)
Query: 31 RNPGQVIKRYLKDLLYVTRNGSFVINNIA-----EKDTNVYTCTVS--NAAGSTSKTIQM 83
+ G ++ + D NGS +I NI + D +Y C S ++ S+T ++
Sbjct: 57 KKDGLILALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKV 116
Query: 84 NVLVPPFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKD 126
V P F Q ES+ + + + C G P P W K+
Sbjct: 117 MVAGPLRFL-SQTESITAFMGDTVLLKCEVIGDPMPTIHWQKN 158
>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin
Length = 570
Score = 46.6 bits (109), Expect = 5e-06, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 4/94 (4%)
Query: 51 GSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVL---VPPFFKDEQQESVAIVVNHPM 107
S VIN + D YTC N+ G+ + + + + +PP F + ++ V + P+
Sbjct: 61 ASLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKD-VHETLGFPV 119
Query: 108 NISCSHYGVPTPDFSWYKDGSLLRIQSHYITFFL 141
C G SWYKDG LL+ ++ T F+
Sbjct: 120 AFECRINGSEPLQVSWYKDGELLKDDANLQTSFI 153
Score = 44.3 bits (103), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/95 (26%), Positives = 40/95 (42%)
Query: 47 VTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKDEQQESVAIVVNHP 106
V + + + + D YTC SN AG S + Q+ V PP F + + S + +
Sbjct: 249 VENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEH 308
Query: 107 MNISCSHYGVPTPDFSWYKDGSLLRIQSHYITFFL 141
C G P WYKD + ++ S + F+
Sbjct: 309 TRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFV 343
Score = 39.3 bits (90), Expect = 0.001, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 57 NIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKDEQQESVAIVVNHPMNISCSHYGV 116
N++ +D+ YTC NAAGS S + + V PP F+ ++ V + +++ C G
Sbjct: 353 NLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFR-KKPHPVETLKGADVHLECELQGT 411
Query: 117 PTPDFSWYKDGSLLRIQSHY 136
P SW+KD LR Y
Sbjct: 412 PPFQVSWHKDKRELRSGKKY 431
Score = 36.2 bits (82), Expect = 0.007, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Query: 66 YTCTVSNAAGSTSKTIQMNVL---VPPFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFS 122
Y C+ SN G+ S + ++ + VPPFF D + SV + + C G +
Sbjct: 172 YNCSASNPLGTASSSAKLTLSEHEVPPFF-DLKPVSVDLALGESGTFKCHVTGTAPIKIT 230
Query: 123 WYKDGSLLRIQSHY 136
W KD +R +Y
Sbjct: 231 WAKDNREIRPGGNY 244
Score = 33.9 bits (76), Expect = 0.033, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 88 PPFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHY 136
PP+F E E V + P+ + C G P +WYK+ + LR Y
Sbjct: 5 PPYFI-EPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAY 52
Score = 33.9 bits (76), Expect = 0.039, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Query: 52 SFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKDEQQESVAIVVNHPMNISC 111
S I N+ D Y C SN GS + + + PP F ++ ++ VV + +
Sbjct: 441 SIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPRFV-KKLSDISTVVGEEVQLQA 499
Query: 112 SHYGVPTPDFSWYKD-GSLLR 131
+ G +W+KD G ++R
Sbjct: 500 TIEGAEPISVAWFKDKGEIVR 520
>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated
Variant
Length = 284
Score = 46.2 bits (108), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 41/98 (41%)
Query: 44 LLYVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKDEQQESVAIVV 103
+ V + + + + D YTC SN AG S + Q+ V PP F + + S +
Sbjct: 54 MTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQAPPRFIKKLEPSRIVKQ 113
Query: 104 NHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHYITFFL 141
+ C G P WYKD + ++ S + F+
Sbjct: 114 DEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFV 151
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 57 NIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKDEQQESVAIVVNHPMNISCSHYGV 116
N++ +D+ YTC NAAGS S + + V PP F+ ++ V + +++ C G
Sbjct: 161 NLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFR-KKPHPVETLKGADVHLECELQGT 219
Query: 117 PTPDFSWYKDGSLLRIQSHY 136
P SW+KD LR Y
Sbjct: 220 PPFQVSWHKDKRELRSGKKY 239
>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion
Complex In Space Group P6522
pdb|3P40|A Chain A, Crystal Structure Of Neurofascin Adhesion Complex In Space
Group P3221
Length = 404
Score = 46.2 bits (108), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 50 NGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKDEQQESVAIVVNHPMNI 109
N + I N++E+D+ Y C SN GS TI + V P++ DE + ++ + +
Sbjct: 274 NKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWLDEPK-NLILAPGEDGRL 332
Query: 110 SCSHYGVPTPDFSWYKDGSLLR 131
C G P P W +G L+
Sbjct: 333 VCRANGNPKPTVQWMVNGEPLQ 354
Score = 33.1 bits (74), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 109 ISCSHYGVPTPDFSWYKDGSLL 130
+ C GVPTPD +WYK G L
Sbjct: 242 LECIASGVPTPDIAWYKKGGDL 263
>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin
Length = 284
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 41/98 (41%)
Query: 44 LLYVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKDEQQESVAIVV 103
+ V + + + + D YTC SN AG S + Q+ V PP F + + S +
Sbjct: 54 MTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQ 113
Query: 104 NHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHYITFFL 141
+ C G P WYKD + ++ S + F+
Sbjct: 114 DEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFV 151
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 57 NIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKDEQQESVAIVVNHPMNISCSHYGV 116
N++ +D+ YTC NAAGS S + + V PP F+ ++ V + +++ C G
Sbjct: 161 NLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFR-KKPHPVETLKGADVHLECELQGT 219
Query: 117 PTPDFSWYKDGSLLRIQSHY 136
P SW+KD LR Y
Sbjct: 220 PPFQVSWHKDKRELRSGKKY 239
>pdb|1F97|A Chain A, Soluble Part Of The Junction Adhesion Molecule From Mouse
Length = 212
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 48/110 (43%), Gaps = 5/110 (4%)
Query: 35 QVIKRYLKDLLYVTRNGSFVINNIAEKDTNVYTCTVSNAAGST--SKTIQMNVLVPPFFK 92
Q+ Y + + + +F +++ KD YTC VS G +I + VLVPP
Sbjct: 51 QITAPYADRVTFSSSGITF--SSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKP 108
Query: 93 DEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDG-SLLRIQSHYITFFL 141
S + N + H G P ++SW+KDG S+L + F+
Sbjct: 109 TISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFM 158
>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|B Chain B, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|C Chain C, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
Length = 816
Score = 43.9 bits (102), Expect = 3e-05, Method: Composition-based stats.
Identities = 27/98 (27%), Positives = 40/98 (40%), Gaps = 6/98 (6%)
Query: 46 YVTRNGSFV----INNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKDEQQESVAI 101
YVT NG V I ++ D +Y C + G + ++NV P+ + Q E AI
Sbjct: 481 YVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIR--QMEKKAI 538
Query: 102 VVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHYITF 139
V + ++C G P W +D L I F
Sbjct: 539 VAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVF 576
Score = 43.5 bits (101), Expect = 4e-05, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 10/93 (10%)
Query: 50 NGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFK-DEQQESVAIVVNHPMN 108
+G+ +I + +D+ Y C V+N+ G S + V P K D ++V P
Sbjct: 305 SGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDF--GRPAV 362
Query: 109 ISCSHYGVPTPDFSWYKDG-------SLLRIQS 134
+C + G P SW KDG S+LRI+S
Sbjct: 363 FTCQYTGNPIKTVSWMKDGKAIGHSESVLRIES 395
Score = 37.7 bits (86), Expect = 0.002, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 31/80 (38%), Gaps = 2/80 (2%)
Query: 47 VTRNGS-FVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKDEQQESVAIVVNH 105
V R GS I + +TC N AG T +NV VPP + E + A
Sbjct: 672 VGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPPRWILEPTDK-AFAQGS 730
Query: 106 PMNISCSHYGVPTPDFSWYK 125
+ C G P P +W K
Sbjct: 731 DAKVECKADGFPKPQVTWKK 750
Score = 34.3 bits (77), Expect = 0.025, Method: Composition-based stats.
Identities = 26/109 (23%), Positives = 48/109 (44%), Gaps = 6/109 (5%)
Query: 32 NPGQVIKRYLKDLLYVTRNGSFV-INNIAEKDTNVYTCTVSNAAGSTSKTIQMNV---LV 87
NP + + ++KD + + S + I ++ ++D +Y C V N S + ++ +
Sbjct: 370 NPIKTVS-WMKDGKAIGHSESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFD 428
Query: 88 PPFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHY 136
PP + QE + + + C G PTP+ SW DG + Y
Sbjct: 429 PPVIRQAFQEET-MEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRY 476
>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5S|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 394
Score = 42.4 bits (98), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 10/93 (10%)
Query: 50 NGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFK-DEQQESVAIVVNHPMN 108
+G+ +I + +D+ Y C V+N+ G S + V P K D ++V P
Sbjct: 275 SGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDF--GRPAV 332
Query: 109 ISCSHYGVPTPDFSWYKDG-------SLLRIQS 134
+C + G P SW KDG S+LRI+S
Sbjct: 333 FTCQYTGNPIKTVSWMKDGKAIGHSESVLRIES 365
Score = 32.0 bits (71), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 96 QESVAIVVNHPMNISCSHYGVPTPDFSWYK 125
Q+ + ++V H +++ C G P P F WYK
Sbjct: 225 QKPLELMVAHTISLLCPAQGFPAPSFRWYK 254
>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity
Length = 388
Score = 42.4 bits (98), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 10/93 (10%)
Query: 50 NGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFK-DEQQESVAIVVNHPMN 108
+G+ +I + +D+ Y C V+N+ G S + V P K D ++V P
Sbjct: 269 SGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDF--GRPAV 326
Query: 109 ISCSHYGVPTPDFSWYKDG-------SLLRIQS 134
+C + G P SW KDG S+LRI+S
Sbjct: 327 FTCQYTGNPIKTVSWMKDGKAIGHSESVLRIES 359
Score = 32.0 bits (71), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 96 QESVAIVVNHPMNISCSHYGVPTPDFSWYK 125
Q+ + ++V H +++ C G P P F WYK
Sbjct: 219 QKPLELMVAHTISLLCPAQGFPAPSFRWYK 248
>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5R|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 391
Score = 42.4 bits (98), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 10/93 (10%)
Query: 50 NGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFK-DEQQESVAIVVNHPMN 108
+G+ +I + +D+ Y C V+N+ G S + V P K D ++V P
Sbjct: 272 SGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDF--GRPAV 329
Query: 109 ISCSHYGVPTPDFSWYKDG-------SLLRIQS 134
+C + G P SW KDG S+LRI+S
Sbjct: 330 FTCQYTGNPIKTVSWMKDGKAIGHSESVLRIES 362
>pdb|1NBQ|A Chain A, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
pdb|1NBQ|B Chain B, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
Length = 209
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 57 NIAEKDTNVYTCTVSNAAGSTSKTIQMN--VLVPPFFKDEQQESVAIVVNHPMNISCSHY 114
++ +DT YTC VS G++ +++ VLVPP S A + N + ++CS
Sbjct: 74 SVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAV-LTCSEQ 132
Query: 115 -GVPTPDFSWYKDGSLL 130
G P +++W+KDG ++
Sbjct: 133 DGSPPSEYTWFKDGIVM 149
Score = 26.6 bits (57), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 95 QQESVAIVVNHPMNISCSHYGVPTPDFSW-YKDGSLLRI 132
+ V I N+P+ +SC++ G +P W + G R+
Sbjct: 10 SEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRL 48
>pdb|4FRW|A Chain A, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|B Chain B, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|C Chain C, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|D Chain D, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|E Chain E, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|F Chain F, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
Length = 218
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Query: 50 NGSFVINNIAEKDTNVYTCTVSN-AAGSTSKTIQMNVLVPPFFKDEQQESVAIVVNHPMN 108
+GS ++ N + D Y C VS AGS +++ VLVPP ++ +
Sbjct: 78 DGSVLLRNAVQADEGEYECRVSTFPAGSFQARLRLRVLVPPLPSLNPGPALEEGQGLTLA 137
Query: 109 ISCSHYGVPTPDFSW 123
SC+ G P P +W
Sbjct: 138 ASCTAEGSPAPSVTW 152
>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
pdb|1BIH|B Chain B, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
Length = 395
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 61 KDTNVYTCTVSNAAGSTSK-TIQMNVLVPPFFKDEQQESVAIVVNHPMNISCSHYGVPTP 119
+D VYTC V N G K ++++ V+ P ++ + ++ + + + I C G+P P
Sbjct: 280 EDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAP 339
Query: 120 DFSW 123
+ W
Sbjct: 340 NVVW 343
>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar
pdb|2YD8|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar In Complex
With Sucrose Octasulphate
Length = 214
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 60 EKDTNVYTCTVSNAAGSTSKTIQMNVL----VPPFFKDEQQESVAIVVNHPMNIS--CSH 113
++D +Y CT +N+ G + + +++VL +PP F VV + C+
Sbjct: 73 QRDEAIYECTATNSLGEINTSAKLSVLEEEQLPPGFPSIDMGPQLKVVEKARTATMLCAA 132
Query: 114 YGVPTPDFSWYKD 126
G P P+ SW+KD
Sbjct: 133 GGNPDPEISWFKD 145
Score = 27.3 bits (59), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 49 RNGSFVINNIAEKDTNVYTCTVSNAAGS 76
R+G+ I + E D Y C +N+AG+
Sbjct: 162 RSGALQIESSEESDQGKYECVATNSAGT 189
>pdb|3V6B|R Chain R, Vegfr-2VEGF-E Complex Structure
Length = 424
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 11/96 (11%)
Query: 34 GQVIKRYLKDLLYVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPF--F 91
G +K++L L I+ + D +YTC S+ + + + V PF F
Sbjct: 152 GSEMKKFLSTL---------TIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAF 202
Query: 92 KDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDG 127
+ V V + I + G P P+ WYK+G
Sbjct: 203 GSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNG 238
>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure
Length = 772
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 41/111 (36%), Gaps = 11/111 (9%)
Query: 19 HSRYNYTNLPQSRNPGQVIKRYLKDLLYVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTS 78
H N G +K++L L I+ + D +YTC S+ +
Sbjct: 267 HQHKKLVNRDLKTQSGSEMKKFLSTL---------TIDGVTRSDQGLYTCAASSGLMTKK 317
Query: 79 KTIQMNVLVPPF--FKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDG 127
+ + V PF F + V V + I + G P P+ WYK+G
Sbjct: 318 NSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNG 368
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 33/81 (40%), Gaps = 7/81 (8%)
Query: 55 INNIAEKDTNVYTCTVSNAAGSTSKTI--QMNVL---VPPFFKDEQQESVAIVVNHPMNI 109
+ N + +D Y C + + Q+ VL P + + ++ +I + +
Sbjct: 629 LKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPTITGNLENQTTSI--GESIEV 686
Query: 110 SCSHYGVPTPDFSWYKDGSLL 130
SC+ G P P W+KD L
Sbjct: 687 SCTASGNPPPQIMWFKDNETL 707
>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1
pdb|2V9R|A Chain A, First And Second Ig Domains From Human Robo1 (Form 2)
Length = 212
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 6/82 (7%)
Query: 62 DTNVYTCTVSNAAG---STSKTIQMNVLVPPFFKDEQQESVAIVVNHPMNISCSH-YGVP 117
D VY C N G S ++++ +L F ++ V + V P + C G P
Sbjct: 83 DEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSD--VMVAVGEPAVMECQPPRGHP 140
Query: 118 TPDFSWYKDGSLLRIQSHYITF 139
P SW KDGS L + IT
Sbjct: 141 EPTISWKKDGSPLDDKDERITI 162
Score = 32.7 bits (73), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 8/62 (12%)
Query: 94 EQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRI-----QSHYI---TFFLFFQR 145
E + + P ++C G PTP WYK G + +SH + + LFF R
Sbjct: 14 EHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLR 73
Query: 146 LL 147
++
Sbjct: 74 IV 75
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 42 KDLLYVTRNGSFVINNIAEKDTNVYTCTVSNAAGS-TSKTIQMNVLVPPFF 91
KD R G +I + D Y C +N G S+ ++ VL P F
Sbjct: 156 KDERITIRGGKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLERPSF 206
>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
pdb|2IEP|B Chain B, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
Length = 192
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 15/97 (15%)
Query: 47 VTRNGSFV-INNIAEKDTNVYTCTVSNAAGSTSKT-------IQMNVLVPPFFKDEQQES 98
+ NG + I ++ + D +Y CT +N G ++ ++ + PP +
Sbjct: 57 IRENGQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPI-------N 109
Query: 99 VAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSH 135
V I+ + C+ G P P SW K S LR S
Sbjct: 110 VKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSR 146
Score = 29.3 bits (64), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 45 LYVTRNGSFVINNIAEKDTNVYTCTVSNAAGST-SKTIQMNVLV 87
+ V +GS I+N+ ++D Y C N+ G+ SK +++ V V
Sbjct: 147 IAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVEV 190
>pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169 Of
Titin
pdb|2J8O|A Chain A, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
pdb|2J8O|B Chain B, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
Length = 197
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 44/112 (39%), Gaps = 6/112 (5%)
Query: 31 RNPGQVIKRYLKDLLYVTRNG--SFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVP 88
R ++I LK + + G +I ++ + D VY +N GS S T + V VP
Sbjct: 40 RQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVP 99
Query: 89 PFFKD----EQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHY 136
E +V + ++I G P P +W K L+ HY
Sbjct: 100 AKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHY 151
>pdb|2ILL|A Chain A, Anomalous Substructure Of Titin-A168169
Length = 195
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 44/112 (39%), Gaps = 6/112 (5%)
Query: 31 RNPGQVIKRYLKDLLYVTRNG--SFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVP 88
R ++I LK + + G +I ++ + D VY +N GS S T + V VP
Sbjct: 38 RQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVP 97
Query: 89 PFFKD----EQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHY 136
E +V + ++I G P P +W K L+ HY
Sbjct: 98 AKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHY 149
>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar
Length = 201
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 60 EKDTNVYTCTVSNAAGSTSKTIQMNVL----VPPFFK--DEQQESVAIVVNHPMNISCSH 113
++D +Y CT +N+ G + + +++VL +P F D + + + C+
Sbjct: 74 QRDEAIYECTATNSLGEINTSAKLSVLEEDQLPSGFPTIDMGPQLKVVEKGRTATMLCAA 133
Query: 114 YGVPTPDFSWYKD 126
G P P+ SW+KD
Sbjct: 134 GGNPDPEISWFKD 146
Score = 27.3 bits (59), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 49 RNGSFVINNIAEKDTNVYTCTVSNAAGS 76
R+G+ I + E D Y C +N+AG+
Sbjct: 163 RSGALQIESSEESDQGKYECVATNSAGT 190
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 36.2 bits (82), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 45 LYVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNV 85
+ V +G+ N+ +DT +YTC VSN+ G+T+ + +NV
Sbjct: 391 IAVLSDGTLNFTNVTVQDTGMYTCMVSNSVGNTTASATLNV 431
>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|B Chain B, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|C Chain C, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|D Chain D, Drosophila Robo Ig1-2 (Monoclinic Form)
Length = 208
Score = 36.2 bits (82), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
Query: 94 EQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDG---SLLRIQSHYITF---FLFFQRLL 147
E + + N P ++C G P P W+KDG S +SH + F LFF R +
Sbjct: 14 EHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTM 73
Score = 29.3 bits (64), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 6/72 (8%)
Query: 60 EKDTNVYTCTVSNAAG---STSKTIQMNVLVPPFFKDEQQESVAIVVNHPMNISCSH-YG 115
E+D Y C N G S ++Q+ VL F + + VA + C G
Sbjct: 78 EQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVA--KGETALLECGPPKG 135
Query: 116 VPTPDFSWYKDG 127
+P P W KDG
Sbjct: 136 IPEPTLIWIKDG 147
>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|B Chain B, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|C Chain C, Drosophila Robo Ig1-2 (Tetragonal Form)
Length = 217
Score = 36.2 bits (82), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
Query: 94 EQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDG---SLLRIQSHYITF---FLFFQRLL 147
E + + N P ++C G P P W+KDG S +SH + F LFF R +
Sbjct: 14 EHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTM 73
Score = 29.3 bits (64), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 6/72 (8%)
Query: 60 EKDTNVYTCTVSNAAG---STSKTIQMNVLVPPFFKDEQQESVAIVVNHPMNISCSH-YG 115
E+D Y C N G S ++Q+ VL F + + VA + C G
Sbjct: 78 EQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVA--KGETALLECGPPKG 135
Query: 116 VPTPDFSWYKDG 127
+P P W KDG
Sbjct: 136 IPEPTLIWIKDG 147
>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin
pdb|2NZI|B Chain B, Crystal Structure Of Domains A168-A170 From Titin
Length = 305
Score = 36.2 bits (82), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 44/112 (39%), Gaps = 6/112 (5%)
Query: 31 RNPGQVIKRYLKDLLYVTRNG--SFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVP 88
R ++I LK + + G +I ++ + D VY +N GS S T + V VP
Sbjct: 40 RQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVP 99
Query: 89 PFF----KDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHY 136
E +V + ++I G P P +W K L+ HY
Sbjct: 100 AKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHY 151
>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Chicken Receptor Protein Tyrosine Phosphatase Sigma
Length = 210
Score = 35.8 bits (81), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
Query: 61 KDTNVYTCTVSNAAGSTSKTIQMNVL----VPPFFKDEQQESVAIVVNHPMNIS--CSHY 114
+D N+Y C N G + ++ VL +PP F + VV + C+
Sbjct: 74 RDENIYECVAQNPHGEVTVHAKLTVLREDQLPPGFPNIDMGPQLKVVERTRTATMLCAAS 133
Query: 115 GVPTPDFSWYKD 126
G P P+ +W+KD
Sbjct: 134 GNPDPEITWFKD 145
Score = 27.3 bits (59), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 49 RNGSFVINNIAEKDTNVYTCTVSNAAG 75
R+G I + E D Y C SN+AG
Sbjct: 162 RSGGLQIESSEETDQGKYECVASNSAG 188
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 35.8 bits (81), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 47 VTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNV 85
V +G+ N+ +DT YTC V+N+AG+T+ + +NV
Sbjct: 364 VLHDGTLNFTNVTVQDTGQYTCMVTNSAGNTTASATLNV 402
>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3
Length = 189
Score = 35.4 bits (80), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 32/79 (40%), Gaps = 3/79 (3%)
Query: 62 DTNVYTCTVS-NAAGSTS-KTIQMNVLVPPFFKDEQQESVAIVV-NHPMNISCSHYGVPT 118
D +Y C A G + I + V VPP Q+ A M SC G P
Sbjct: 68 DEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPE 127
Query: 119 PDFSWYKDGSLLRIQSHYI 137
P SW+++G L+ YI
Sbjct: 128 PAISWFRNGKLIEENEKYI 146
>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3
pdb|2WIM|B Chain B, Crystal Structure Of Ncam2 Ig1-3
Length = 291
Score = 35.4 bits (80), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 32/79 (40%), Gaps = 3/79 (3%)
Query: 62 DTNVYTCTVS-NAAGSTS-KTIQMNVLVPPFFKDEQQESVAIVV-NHPMNISCSHYGVPT 118
D +Y C A G + I + V VPP Q+ A M SC G P
Sbjct: 164 DEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPE 223
Query: 119 PDFSWYKDGSLLRIQSHYI 137
P SW+++G L+ YI
Sbjct: 224 PAISWFRNGKLIEENEKYI 242
>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam
Length = 291
Score = 34.7 bits (78), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 14/96 (14%)
Query: 42 KDLLYVTRNGSFV-INNIAEKDTNVYTCTVSN-AAGSTS-KTIQMNVLVPPFFKDEQQES 98
KD+ ++ + +++ I I + D Y C A G + K IQ+ V VPP + Q
Sbjct: 145 KDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQS-- 202
Query: 99 VAIVVNHPMNIS------CSHYGVPTPDFSWYKDGS 128
+VN N+ C G P P SW KDG
Sbjct: 203 ---IVNATANLGQSVTLVCDADGFPEPTMSWTKDGE 235
>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex
Length = 384
Score = 34.7 bits (78), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 34/88 (38%), Gaps = 5/88 (5%)
Query: 50 NGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKDEQQESVAIVVNHPMNI 109
NG I N ++D Y C N+ G Q+ P + + + + + +
Sbjct: 257 NGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWV-QIINDIHVAMEESVFW 315
Query: 110 SCSHYGVPTPDFSWYKDGSLL----RIQ 133
C G P P + W K+G L RIQ
Sbjct: 316 ECKANGRPKPTYRWLKNGDPLLTRDRIQ 343
>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4
pdb|3JXA|B Chain B, Immunoglobulin Domains 1-4 Of Mouse Cntn4
Length = 383
Score = 34.7 bits (78), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 34/88 (38%), Gaps = 5/88 (5%)
Query: 50 NGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKDEQQESVAIVVNHPMNI 109
NG I N ++D Y C N+ G Q+ P + + + + + +
Sbjct: 256 NGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWV-QIINDIHVAMEESVFW 314
Query: 110 SCSHYGVPTPDFSWYKDGSLL----RIQ 133
C G P P + W K+G L RIQ
Sbjct: 315 ECKANGRPKPTYRWLKNGDPLLTRDRIQ 342
>pdb|1RHF|A Chain A, Crystal Structure Of Human Tyro3-D1d2
pdb|1RHF|B Chain B, Crystal Structure Of Human Tyro3-D1d2
Length = 182
Score = 34.3 bits (77), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Query: 51 GSFVINNIAEKDTNVYTCTVSNAAGST-SKTIQMNVLVPPFFKDEQQESVAIVVNHPMNI 109
G + ++ D Y C V + + S+ + + V PFF E ++ +A+ N P +
Sbjct: 60 GFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKD-LAVPPNAPFQL 118
Query: 110 SCSHYGVPTP-DFSWYK 125
SC G P P W++
Sbjct: 119 SCEAVGPPEPVTIVWWR 135
Score = 32.0 bits (71), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 9/46 (19%)
Query: 104 NHPMNISCSHYGVPTPDFSWYKDGSLLR---------IQSHYITFF 140
P+ ++CS G PD W KDG++++ + H+I F
Sbjct: 17 GQPVKLNCSVEGXEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFL 62
>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 214
Score = 34.3 bits (77), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
Query: 61 KDTNVYTCTVSNAAGSTSKTIQMNVL----VPPFFKDEQQESVAIVVNHPMNIS--CSHY 114
+D NVY C N+ G + ++ VL +P F + VV + C+
Sbjct: 74 RDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAAS 133
Query: 115 GVPTPDFSWYKD 126
G P P+ +W+KD
Sbjct: 134 GNPDPEITWFKD 145
>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1
Length = 381
Score = 34.3 bits (77), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 7/93 (7%)
Query: 46 YVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLV---PPFFKDEQQESVAIV 102
+ T + I +++ +D Y C N+ G T+Q ++V P + K I
Sbjct: 251 WTTAEPTLQIPSVSFEDEGTYECEAENSKGR--DTVQGRIIVQAQPEWLKVISDTEADIG 308
Query: 103 VNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSH 135
N + C+ G P P W ++G L Q+
Sbjct: 309 SN--LRWGCAAAGKPRPTVRWLRNGEPLASQNR 339
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 12/91 (13%)
Query: 51 GSFVINNIAEKDTNVYTCTVSNAAGSTSKTI-----QMNV------LVPPFFKDEQQESV 99
G+ I D Y+C ++ ++K++ Q+N+ L P K
Sbjct: 157 GNLYIARTNASDLGNYSCLATSHMDFSTKSVFSKFAQLNLAAEDTRLFAPSIKARFPAET 216
Query: 100 AIVVNHPMNISCSHYGVPTPDFSWYK-DGSL 129
+V + + C +G P P W K DGSL
Sbjct: 217 YALVGQQVTLECFAFGNPVPRIKWRKVDGSL 247
>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 202
Score = 34.3 bits (77), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
Query: 61 KDTNVYTCTVSNAAGSTSKTIQMNVL----VPPFFKDEQQESVAIVVNHPMNIS--CSHY 114
+D NVY C N+ G + ++ VL +P F + VV + C+
Sbjct: 74 RDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAAS 133
Query: 115 GVPTPDFSWYKD 126
G P P+ +W+KD
Sbjct: 134 GNPDPEITWFKD 145
>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 304
Score = 33.9 bits (76), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
Query: 61 KDTNVYTCTVSNAAGSTSKTIQMNVL----VPPFFKDEQQESVAIVVNHPMNIS--CSHY 114
+D NVY C N+ G + ++ VL +P F + VV + C+
Sbjct: 74 RDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAAS 133
Query: 115 GVPTPDFSWYKD 126
G P P+ +W+KD
Sbjct: 134 GNPDPEITWFKD 145
Score = 30.0 bits (66), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 5/86 (5%)
Query: 49 RNGSFVINNIAEKDTNVYTCTVSNAAG---STSKTIQMNVL-VPPFFKDEQQESVAIVVN 104
R+G+ I + E D Y C +N+AG S+ + + V V P F S I+
Sbjct: 162 RSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPM-SHEIMPG 220
Query: 105 HPMNISCSHYGVPTPDFSWYKDGSLL 130
+NI+C G P P W + L
Sbjct: 221 GNVNITCVAVGSPMPYVKWMQGAEDL 246
>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|B Chain B, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
Length = 212
Score = 33.9 bits (76), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
Query: 61 KDTNVYTCTVSNAAGSTSKTIQMNVL----VPPFFK--DEQQESVAIVVNHPMNISCSHY 114
+D +Y C SN G S + ++ VL +P F D + + + C+
Sbjct: 74 RDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAAS 133
Query: 115 GVPTPDFSWYKD 126
G P P+ +W+KD
Sbjct: 134 GNPDPEITWFKD 145
>pdb|3FN3|A Chain A, Dimeric Structure Of Pd-L1
pdb|3FN3|B Chain B, Dimeric Structure Of Pd-L1
Length = 221
Score = 33.5 bits (75), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 5/86 (5%)
Query: 39 RYLKDLLYVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSK-TIQMNVLVPPFFKDEQQE 97
R LKD L + N + I ++ +D VY C +S + T+++N P+ K Q+
Sbjct: 69 RLLKDQLSLG-NAALQITDVKLQDAGVYRCMISYGGADYKRITVKVNA---PYNKINQRI 124
Query: 98 SVAIVVNHPMNISCSHYGVPTPDFSW 123
V V ++C G P + W
Sbjct: 125 LVVDPVTSEHELTCQAEGYPKAEVIW 150
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 33.5 bits (75), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 25/39 (64%)
Query: 47 VTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNV 85
V +G+ +++ DT VYTC V+N AG+++ + +NV
Sbjct: 403 VLNDGTLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNV 441
>pdb|3SBW|C Chain C, Crystal Structure Of The Complex Between The Extracellular
Domains Of Mouse Pd-1 Mutant And Human Pd-L1
Length = 222
Score = 33.5 bits (75), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 5/86 (5%)
Query: 39 RYLKDLLYVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSK-TIQMNVLVPPFFKDEQQE 97
R LKD L + N + I ++ +D VY C +S + T+++N P+ K Q+
Sbjct: 69 RLLKDQLSLG-NAALQITDVKLQDAGVYRCMISYGGADYKRITVKVNA---PYNKINQRI 124
Query: 98 SVAIVVNHPMNISCSHYGVPTPDFSW 123
V V ++C G P + W
Sbjct: 125 LVVDPVTSEHELTCQAEGYPKAEVIW 150
>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4
Length = 192
Score = 33.5 bits (75), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 104 NHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHYI 137
M SC G P P SW+++G L+ YI
Sbjct: 19 GEEMTFSCRASGSPEPAISWFRNGKLIEENEKYI 52
>pdb|3BIK|A Chain A, Crystal Structure Of The Pd-1PD-L1 Complex
pdb|3BIS|A Chain A, Crystal Structure Of The Pd-L1
pdb|3BIS|B Chain B, Crystal Structure Of The Pd-L1
Length = 222
Score = 33.5 bits (75), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 5/86 (5%)
Query: 39 RYLKDLLYVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSK-TIQMNVLVPPFFKDEQQE 97
R LKD L + N + I ++ +D VY C +S + T+++N P+ K Q+
Sbjct: 69 RLLKDQLSLG-NAALQITDVKLQDAGVYRCMISYGGADYKRITVKVNA---PYNKINQRI 124
Query: 98 SVAIVVNHPMNISCSHYGVPTPDFSW 123
V V ++C G P + W
Sbjct: 125 LVVDPVTSEHELTCQAEGYPKAEVIW 150
>pdb|3PUC|A Chain A, Atomic Resolution Structure Of Titin Domain M7
Length = 99
Score = 33.1 bits (74), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 34 GQVIKRYLKDLLYVTRNGSFV-INNIAEKDTNVYTCTVSNAAGSTSKTIQMNV 85
G+ I + K L + G F+ I+ D+ +YTCTV N+AGS S + ++ +
Sbjct: 44 GKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTI 96
>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken
Length = 382
Score = 33.1 bits (74), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
Query: 55 INNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKDEQQESVAIVVNHPMNISCSHY 114
I N+ +D Y C N G + ++ + P + D ++ A + + + SC
Sbjct: 261 IQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLDVITDTEADIGSD-LRWSCVAS 319
Query: 115 GVPTPDFSWYKDGSLLRIQSH 135
G P P W +DG L Q+
Sbjct: 320 GKPRPAVRWLRDGQPLASQNR 340
Score = 30.8 bits (68), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 7/86 (8%)
Query: 43 DLLYVTRNGSFVINN-IAEKDTNVYTCTVSNAAGS-TSKTIQMNVLVPPFFKDEQQESVA 100
D Y G VI+N + KD Y C +NA G+ S+ + F E+++ V
Sbjct: 53 DSRYRLVAGDLVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVK 112
Query: 101 IVVNHPMNISCS---HYGVPTPDFSW 123
I + +CS HY P + W
Sbjct: 113 ITEGWGVMFTCSPPPHY--PALSYRW 136
>pdb|1IE5|A Chain A, Nmr Structure Of The Third Immunoglobulin Domain From The
Neural Cell Adhesion Molecule
Length = 107
Score = 32.7 bits (73), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 79 KTIQMNVLVPPFFKDEQQESVAIV-VNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSH 135
K IQ+ V VPP + Q A ++ + ++C G P P +W KDG + + +
Sbjct: 2 KDIQVIVNVPPSVRARQSTMNATANLSQSVTLACDADGFPEPTMTWTKDGEPIEQEDN 59
>pdb|3S97|C Chain C, Ptprz Cntn1 Complex
pdb|3S97|D Chain D, Ptprz Cntn1 Complex
Length = 201
Score = 32.7 bits (73), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 9/85 (10%)
Query: 50 NGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVP-------PFFKD--EQQESVA 100
NG+ I N+ D Y+C VS+ + + S + L+P P+ D Q + V
Sbjct: 65 NGNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVY 124
Query: 101 IVVNHPMNISCSHYGVPTPDFSWYK 125
++ + + C G P PD W K
Sbjct: 125 ALMGQNVTLECFALGNPVPDIRWRK 149
>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165
pdb|3LCY|B Chain B, Titin Ig Tandem Domains A164-A165
pdb|3LCY|C Chain C, Titin Ig Tandem Domains A164-A165
pdb|3LCY|D Chain D, Titin Ig Tandem Domains A164-A165
Length = 197
Score = 32.7 bits (73), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 18/85 (21%), Positives = 34/85 (40%), Gaps = 2/85 (2%)
Query: 49 RNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKDEQ--QESVAIVVNHP 106
R + + ++D VYTC +N G + ++ + P F +E V
Sbjct: 61 RTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGST 120
Query: 107 MNISCSHYGVPTPDFSWYKDGSLLR 131
+ + + G P P +W+ LL+
Sbjct: 121 LRLHVMYIGRPVPAMTWFHGQKLLQ 145
Score = 30.0 bits (66), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 89 PFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQS 134
P + E ++ V + +SC G P PD WY+ G L IQS
Sbjct: 8 PGIRKEMKD-VTTKLGEAAQLSCQIVGRPLPDIKWYRFGKEL-IQS 51
>pdb|1E07|A Chain A, Model Of Human Carcinoembryonic Antigen By Homology
Modelling And Curve-Fitting To Experimental Solution
Scattering Data
Length = 642
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Query: 50 NGSFVINNIAEKDTNVYTCTVSNA-AGSTSKTIQMNVLVPPFFKDEQQESVAIVVNHPMN 108
N + + N+ D Y C + N+ + + S + ++VL P + + +N
Sbjct: 519 NRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDSSYLSGANLN 578
Query: 109 ISCSHYGVPTPDFSWYKDG 127
+SC P+P +SW +G
Sbjct: 579 LSCHSASNPSPQYSWRING 597
Score = 30.4 bits (67), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
Query: 50 NGSFVINNIAEKDTNVYTCTVSN-AAGSTSKTIQMNVLVPPFFKDEQQESVAIVVNHPMN 108
N + + N+ DT Y C N + S ++ +NVL P + + +N
Sbjct: 163 NRTLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLN 222
Query: 109 ISCSHYGVPTPDFSWYKDGSL 129
+SC P +SW+ +G+
Sbjct: 223 LSCHAASNPPAQYSWFVNGTF 243
Score = 30.0 bits (66), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 55 INNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLV 87
I+NI EK++ +YTC +N+A S+T + V
Sbjct: 430 ISNITEKNSGLYTCQANNSASGHSRTTVKTITV 462
Score = 26.2 bits (56), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 40/102 (39%), Gaps = 21/102 (20%)
Query: 44 LLYVTRNGSFVINNIAEKDTNVYTCTVSNAAG-STSKTIQMNVLVPPFFKDEQQESVAIV 102
LL VTRN D Y C + N S + +NVL P D+ S +
Sbjct: 346 LLSVTRN-----------DVGPYECGIQNELSVDHSDPVILNVLYGP---DDPTISPSYT 391
Query: 103 VNHP---MNISCSHYGVPTPDFSWYKDGSLLRIQSHYITFFL 141
P +++SC P +SW DG+ IQ H F+
Sbjct: 392 YYRPGVNLSLSCHAASNPPAQYSWLIDGN---IQQHTQELFI 430
>pdb|2C5D|C Chain C, Structure Of A Minimal Gas6-Axl Complex
pdb|2C5D|D Chain D, Structure Of A Minimal Gas6-Axl Complex
Length = 195
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 89 PFFKDEQQESVAIVVNHPMNISCSHYGVPTP-DFSWYKD 126
P+F +E E + N P N+SC G P P D W +D
Sbjct: 107 PYFLEEP-EDRTVAANTPFNLSCQAQGPPEPVDLLWLQD 144
>pdb|2V9T|A Chain A, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 117
Score = 32.0 bits (71), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 8/62 (12%)
Query: 94 EQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRI-----QSHYI---TFFLFFQR 145
E + + P ++C G PTP WYK G + +SH + + LFF R
Sbjct: 14 EHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLR 73
Query: 146 LL 147
++
Sbjct: 74 IV 75
>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii
Length = 389
Score = 32.0 bits (71), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Query: 52 SFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKDEQQESVAIVVNHPMNISC 111
S I ++ D+ Y C ++ G K++ +++ P F Q + N P+NISC
Sbjct: 64 SLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGN-PINISC 122
Query: 112 SHYGVPTPDFSWYKDGSLL 130
P W +D +L
Sbjct: 123 DVKSNPPASIHWRRDKLVL 141
>pdb|2DL9|A Chain A, Solution Structure Of The Ig-Like Domain Of Human Leucine-
Rich Repeat-Containing Protein 4
Length = 103
Score = 32.0 bits (71), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 27/45 (60%)
Query: 45 LYVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPP 89
+ V +G+ +++ DT VYTC V+N AG+++ + +NV P
Sbjct: 56 ISVLNDGTLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSSGP 100
>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i
Length = 291
Score = 32.0 bits (71), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Query: 52 SFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKDEQQESVAIVVNHPMNISC 111
S I ++ D+ Y C ++ G K++ +++ P F Q + N P+NISC
Sbjct: 64 SLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGN-PINISC 122
Query: 112 SHYGVPTPDFSWYKDGSLL 130
P W +D +L
Sbjct: 123 DVKSNPPASIHWRRDKLVL 141
>pdb|2IFG|A Chain A, Structure Of The Extracellular Segment Of Human Trka In
Complex With Nerve Growth Factor
pdb|2IFG|B Chain B, Structure Of The Extracellular Segment Of Human Trka In
Complex With Nerve Growth Factor
Length = 347
Score = 31.6 bits (70), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 5/75 (6%)
Query: 67 TCTVSNAAGSTSKTIQMNVLVPPFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKD 126
TC N G ++Q+NV P Q A+ ++H I S G P P W +
Sbjct: 229 TCWAENDVGRAEVSVQVNVSFPASV----QLHTAVEMHH-WCIPFSVDGQPAPSLRWLFN 283
Query: 127 GSLLRIQSHYITFFL 141
GS+L S T FL
Sbjct: 284 GSVLNETSFIFTEFL 298
>pdb|3OAI|A Chain A, Crystal Structure Of The Extra-Cellular Domain Of Human
Myelin Protein Zero
pdb|3OAI|B Chain B, Crystal Structure Of The Extra-Cellular Domain Of Human
Myelin Protein Zero
Length = 507
Score = 31.6 bits (70), Expect = 0.17, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 49 RNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLV 87
++GS VI+N+ D +TC V N KT Q+ + V
Sbjct: 465 KDGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYV 503
>pdb|1HNF|A Chain A, Crystal Structure Of The Extracellular Region Of The Human
Cell Adhesion Molecule Cd2 At 2.5 Angstroms Resolution
Length = 182
Score = 31.6 bits (70), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/129 (21%), Positives = 54/129 (41%), Gaps = 12/129 (9%)
Query: 13 LDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDLLYVTRNGSFVINNIAEKDTNVYTCTVSN 72
+D I + + Q R + K KD + +NG+ I ++ D ++Y ++ +
Sbjct: 30 IDDIKWEKTSDKKKIAQFRKEKETFKE--KDTYKLFKNGTLKIKHLKTDDQDIYKVSIYD 87
Query: 73 AAGSTSKTIQMNVLVPPF-FKDEQQESVAIVVNHPMN--ISCSHYGVPTPDFSWYKDGSL 129
G NVL F K +++ S + +N ++C P+ + Y+DG
Sbjct: 88 TKGK-------NVLEKIFDLKIQERVSKPKISWTCINTTLTCEVMNGTDPELNLYQDGKH 140
Query: 130 LRIQSHYIT 138
L++ IT
Sbjct: 141 LKLSQRVIT 149
>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|1YA5|B Chain B, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|2F8V|A Chain A, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|B Chain B, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|C Chain C, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|D Chain D, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
Length = 201
Score = 31.2 bits (69), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 6/85 (7%)
Query: 53 FVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNV---LVPPFFKDEQQESVAIVVNHPMNI 109
I + + ++ Y+ +N +G + T ++ V PP F Q S+ + + +
Sbjct: 65 LTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQ-SMTVRQGSQVRL 123
Query: 110 SCSHYGVPTPDFSWYKDGSLLRIQS 134
G+PTP +Y+DG+ IQS
Sbjct: 124 QVRVTGIPTPVVKFYRDGA--EIQS 146
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 83 MNVLVPPFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLL 130
M P F + Q SV ++ G P P+ SW++DG ++
Sbjct: 1 MTTQAPTFTQPLQ--SVVVLEGSTATFEAHISGFPVPEVSWFRDGQVI 46
>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human
Palladin
Length = 110
Score = 31.2 bits (69), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 109 ISCSHYGVPTPDFSWYKDGSLLRIQSHY 136
+ C G+PTPD SW DG +R S +
Sbjct: 29 MDCKVSGLPTPDLSWQLDGKPVRPDSAH 56
>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|B Chain B, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|C Chain C, Crystal Structure Of The N-Terminus Of Titin
Length = 194
Score = 31.2 bits (69), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 6/85 (7%)
Query: 53 FVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNV---LVPPFFKDEQQESVAIVVNHPMNI 109
I + + ++ Y+ +N +G + T ++ V PP F Q S+ + + +
Sbjct: 65 LTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQ-SMTVRQGSQVRL 123
Query: 110 SCSHYGVPTPDFSWYKDGSLLRIQS 134
G+PTP +Y+DG+ IQS
Sbjct: 124 QVRVTGIPTPVVKFYRDGA--EIQS 146
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 83 MNVLVPPFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLL 130
M P F + Q SV ++ G P P+ SW++DG ++
Sbjct: 1 MTTQAPTFTQPLQ--SVVVLEGSTATFEAHISGFPVPEVSWFRDGQVI 46
>pdb|1NEU|A Chain A, Structure Of Myelin Membrane Adhesion Molecule P0
Length = 124
Score = 30.8 bits (68), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 49 RNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLV 87
++GS VI+N+ D +TC V N KT Q+ + V
Sbjct: 79 KDGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYV 117
>pdb|2Y25|A Chain A, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|B Chain B, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|C Chain C, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|D Chain D, Crystal Structure Of The Myomesin Domains My11-My13
Length = 317
Score = 30.4 bits (67), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 99 VAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSH 135
V I +N++C+ +G P P+ SW K+ L H
Sbjct: 232 VTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDH 268
>pdb|3O4O|C Chain C, Crystal Structure Of An Interleukin-1 Receptor Complex
Length = 339
Score = 30.4 bits (67), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 20/95 (21%)
Query: 49 RNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKDEQQESVAIVVNHPMN 108
++G+ + ++D+ Y CT NA+ +I++ V E ++ +++P
Sbjct: 79 QDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVF-------ENTDAFLPFISYPQI 131
Query: 109 ISCSHYGV-PTPDFS------------WYKDGSLL 130
++ S GV PD S WYKD LL
Sbjct: 132 LTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLL 166
>pdb|2LQR|A Chain A, Nmr Structure Of Ig3 Domain Of Palladin
Length = 108
Score = 30.4 bits (67), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 89 PFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHYIT 138
PFF + + + I P+ +C G P P W+KDG + +S + T
Sbjct: 8 PFF-EMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYT 56
>pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin
Length = 100
Score = 30.4 bits (67), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 45 LYVTRNG--SFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLV 87
+ V+ G S + + D Y C N AG + T+Q++VL
Sbjct: 54 MIVSEKGLHSLIFEVVRASDAGAYACVAKNRAGEATFTVQLDVLA 98
>pdb|3MJ6|A Chain A, Crystal Structure Of The Gammadelta T Cell Costimulatory
Receptor Junctional Adhesion Molecule-Like Protein, Jaml
pdb|3MJ7|A Chain A, Crystal Structure Of The Complex Of Jaml And Coxsackie And
Adenovirus Receptor, Car
pdb|3MJ9|A Chain A, Crystal Structure Of Jaml In Complex With The Stimulatory
Antibody Hl4e10
Length = 268
Score = 30.4 bits (67), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 47 VTRN-GSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPF 90
++RN GS + + E D +YTC++ + KTI ++V+ F
Sbjct: 196 ISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQDEF 240
>pdb|3MTR|A Chain A, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
pdb|3MTR|B Chain B, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
Length = 215
Score = 30.4 bits (67), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 107 MNISCSHYGVPTPDFSWYKDGSLL 130
+NI+C + P+ SW++DG LL
Sbjct: 36 VNITCEVFAYPSATISWFRDGQLL 59
>pdb|2R15|A Chain A, Crystal Structure Of The Myomesin Domains 12 And 13
pdb|2R15|B Chain B, Crystal Structure Of The Myomesin Domains 12 And 13
Length = 212
Score = 30.0 bits (66), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 99 VAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSH 135
V I +N++C+ +G P P+ SW K+ L H
Sbjct: 127 VTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDH 163
>pdb|2DM2|A Chain A, Solution Structure Of The First Ig Domain Of Human
Palladin
Length = 110
Score = 30.0 bits (66), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 89 PFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHYIT 138
PFF + + + I P+ +C G P P W+KDG + +S + T
Sbjct: 9 PFF-EMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYT 57
>pdb|4FHL|A Chain A, Nucleoporin Nup37 From Schizosaccharomyces Pombe
pdb|4FHM|A Chain A, Nup37-Nup120(Aa1-961) Complex From Schizosaccharomyces
Pombe
pdb|4FHN|A Chain A, Nup37-Nup120 Full-Length Complex From Schizosaccharomyces
Pombe
pdb|4FHN|C Chain C, Nup37-Nup120 Full-Length Complex From Schizosaccharomyces
Pombe
Length = 394
Score = 29.6 bits (65), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 115 GVPTPDFSWYKDGSLLRIQSH---YITFFLFFQRL 146
G+P DF W++DGS L I + +T + F RL
Sbjct: 360 GMPIVDFCWHQDGSHLAIATEGSVLLTRLMGFTRL 394
>pdb|4GQ1|A Chain A, Nup37 Of S. Pombe
pdb|4GQ2|P Chain P, S. Pombe Nup120-Nup37 Complex
Length = 393
Score = 29.6 bits (65), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 115 GVPTPDFSWYKDGSLLRIQSH---YITFFLFFQRL 146
G+P DF W++DGS L I + +T + F RL
Sbjct: 359 GMPIVDFCWHQDGSHLAIATEGSVLLTRLMGFTRL 393
>pdb|1KAC|B Chain B, Knob Domain From Adenovirus Serotype 12 In Complex With
Domain 1 Of Its Cellular Receptor Car
pdb|1P69|B Chain B, Structural Basis For Variation In Adenovirus Affinity For
The Cellular Receptor Car (P417s Mutant)
pdb|1P6A|B Chain B, Structural Basis For Variation In Asdenovirus Affinity For
The Cellular Receptor Car (S489y Mutant)
Length = 124
Score = 29.6 bits (65), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 48 TRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPP 89
+ + S + N+ D Y C V A G +K I + VLV P
Sbjct: 80 SGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVLVKP 121
>pdb|1RSF|A Chain A, Nmr Structure Of Monomeric Car D1 Domain
Length = 126
Score = 29.6 bits (65), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 48 TRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPP 89
+ + S + N+ D Y C V A G +K I + VLV P
Sbjct: 82 SGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVLVKP 123
>pdb|2EDJ|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From
Human Roundabout Homolog 2
Length = 100
Score = 29.6 bits (65), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 47 VTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNV 85
+ G+ I N+ DT YTC ++++G TS + ++V
Sbjct: 58 IQEQGTLQIKNLRISDTGTYTCVATSSSGETSWSAVLDV 96
>pdb|3CJJ|A Chain A, Crystal Structure Of Human Rage Ligand-Binding Domain
Length = 219
Score = 29.3 bits (64), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 40/107 (37%), Gaps = 12/107 (11%)
Query: 28 PQSRNPGQVIKRYLKDLLYVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKT---IQM- 83
PQ P + R L NGS + + +D ++ C N G +K+ +++
Sbjct: 45 PQGGGPWDSVARVLP-------NGSLFLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVY 97
Query: 84 NVLVPPFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLL 130
+ P D E A V N + S P SW+ DG L
Sbjct: 98 QIPGKPEIVDSASELTAGVPNK-VGTCVSEGSYPAGTLSWHLDGKPL 143
>pdb|3O3U|N Chain N, Crystal Structure Of Human Receptor For Advanced Glycation
Endproducts (Rage)
Length = 581
Score = 29.3 bits (64), Expect = 0.91, Method: Composition-based stats.
Identities = 28/107 (26%), Positives = 41/107 (38%), Gaps = 12/107 (11%)
Query: 28 PQSRNPGQVIKRYLKDLLYVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKT-IQMNVL 86
PQ P + R L NGS + + +D ++ C N G +K+ ++ V
Sbjct: 416 PQGGGPWDSVARVLP-------NGSLFLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVY 468
Query: 87 -VP--PFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLL 130
+P P D E A V N + S P SW+ DG L
Sbjct: 469 QIPGKPEIVDSASELTAGVPNK-VGTCVSEGSYPAGTLSWHLDGKPL 514
>pdb|3KVQ|A Chain A, Crystal Structure Of Vegfr2 Extracellular Domain D7
Length = 108
Score = 29.3 bits (64), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 103 VNHPMNISCSHYGVPTPDFSWYKDGSLL 130
+ + +SC+ G P P W+KD L
Sbjct: 24 IGESIEVSCTASGNPPPQIMWFKDNETL 51
>pdb|2EO9|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homo1
Length = 118
Score = 29.3 bits (64), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 101 IVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHYI 137
+ V+ +SC G P P W KDG L+ Q I
Sbjct: 20 VAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRI 56
>pdb|3S58|A Chain A, Rage Recognizes Nucleic Acids And Promotes Inflammatory
Responses To Dna
pdb|3S58|B Chain B, Rage Recognizes Nucleic Acids And Promotes Inflammatory
Responses To Dna
pdb|3S59|A Chain A, Rage Recognizes Nucleic Acids And Promotes Inflammatory
Responses To Dna
pdb|3S59|B Chain B, Rage Recognizes Nucleic Acids And Promotes Inflammatory
Responses To Dna
Length = 223
Score = 28.9 bits (63), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 40/107 (37%), Gaps = 12/107 (11%)
Query: 28 PQSRNPGQVIKRYLKDLLYVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKT---IQM- 83
PQ P + R L NGS + + +D ++ C N G +K+ +++
Sbjct: 48 PQGGGPWDSVARVLP-------NGSLFLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVY 100
Query: 84 NVLVPPFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLL 130
+ P D E A V N + S P SW+ DG L
Sbjct: 101 QIPGKPEIVDSASELTAGVPNK-VGTCVSEGSYPAGTLSWHLDGKPL 146
>pdb|3FEH|A Chain A, Crystal Structure Of Full Length Centaurin Alpha-1
pdb|3LJU|X Chain X, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Head Group Of Pip3
Length = 386
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 90 FFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLL 130
F E++ +V ++ P N C+ G P PD++ Y G +
Sbjct: 16 FQGKERRRAVLELLQRPGNARCADCGAPDPDWASYTLGVFI 56
>pdb|3FM8|C Chain C, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Fha Domain Of Kif13b (Capri Target)
pdb|3FM8|D Chain D, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Fha Domain Of Kif13b (Capri Target)
pdb|3MDB|C Chain C, Crystal Structure Of The Ternary Complex Of Full Length
Centaurin Alpha-1, Kif13b Fha Domain, And Ip4
pdb|3MDB|D Chain D, Crystal Structure Of The Ternary Complex Of Full Length
Centaurin Alpha-1, Kif13b Fha Domain, And Ip4
Length = 392
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 94 EQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLL 130
E++ +V ++ P N C+ G P PD++ Y G +
Sbjct: 22 ERRRAVLELLQRPGNARCADCGAPDPDWASYTLGVFI 58
>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Drosophila Receptor Protein Tyrosine Phosphatase Dlar
Length = 212
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 7/75 (9%)
Query: 59 AEKDTNVYTCTVSNAAGST-----SKTIQMNVLVPPFFK--DEQQESVAIVVNHPMNISC 111
A +D Y C N G + TI P F + + I V H + ++C
Sbjct: 73 AGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTC 132
Query: 112 SHYGVPTPDFSWYKD 126
G PTP+ W K+
Sbjct: 133 KAIGNPTPNIYWIKN 147
>pdb|2NPL|X Chain X, Nmr Structure Of Card D2 Domain
Length = 96
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 55 INNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFK 92
+ N + + + Y+CTV N GS +++NV VPP K
Sbjct: 60 VKNASSEYSGTYSCTVRNRVGSDQCLLRLNV-VPPSNK 96
>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar
pdb|3PXJ|B Chain B, Tandem Ig Repeats Of Dlar
pdb|3PXJ|C Chain C, Tandem Ig Repeats Of Dlar
pdb|3PXJ|D Chain D, Tandem Ig Repeats Of Dlar
Length = 210
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 7/75 (9%)
Query: 59 AEKDTNVYTCTVSNAAGST-----SKTIQMNVLVPPFFK--DEQQESVAIVVNHPMNISC 111
A +D Y C N G + TI P F + + I V H + ++C
Sbjct: 75 AGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTC 134
Query: 112 SHYGVPTPDFSWYKD 126
G PTP+ W K+
Sbjct: 135 KAIGNPTPNIYWIKN 149
Score = 26.6 bits (57), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Query: 46 YVTRNGSFVINNIAEKDTNVYTCTVSNAAGST-SKTIQMNV---LVPPFF 91
Y ++G I N E+D Y C N+ G+ SK + V VPP F
Sbjct: 160 YSLKDGFLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVRRVPPTF 209
>pdb|3OJ2|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
pdb|3OJ2|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
Length = 231
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 40 YLKDLLYVTRNGS----FVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVL 86
YLK L + N S + N+ E D Y C VSN G +++ + VL
Sbjct: 170 YLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVL 220
>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab
Length = 241
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 99 VAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHYITFFLFFQRLLL 148
+A+ + + C G PTP SW K+G R + L Q+ L
Sbjct: 25 LAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSL 74
Score = 26.9 bits (58), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 22/44 (50%)
Query: 55 INNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKDEQQES 98
+ N++E+D Y C +N G K ++V P ++E E+
Sbjct: 186 LANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRAAEEELVEA 229
>pdb|3OJM|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring P253r Apert Mutation
Length = 231
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 40 YLKDLLYVTRNGS----FVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVL 86
YLK L + N S + N+ E D Y C VSN G +++ + VL
Sbjct: 170 YLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVL 220
>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex
With Fgf1
Length = 334
Score = 27.7 bits (60), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 99 VAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHYITFFLFFQRLLL 148
+A+ + + C G PTP SW K+G R + L Q+ L
Sbjct: 133 LAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSL 182
>pdb|1NUN|B Chain B, Crystal Structure Analysis Of The Fgf10-fgfr2b Complex
Length = 230
Score = 27.7 bits (60), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 40 YLKDLLYVTRNGS----FVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVL 86
YLK L + N S + N+ E D Y C VSN G +++ + VL
Sbjct: 169 YLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVL 219
>pdb|3JZ7|A Chain A, Crystal Structure Of The Extracellular Domains Of
Coxsackie & Adenovirus Receptor From Mouse (Mcar)
Length = 214
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 30/81 (37%), Gaps = 10/81 (12%)
Query: 50 NGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPP----FFKDEQQESVAIVVNH 105
+ S + N+ D Y C V A G +K + VLV P F D +E + +
Sbjct: 83 DASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFVDGSEE-----IGN 137
Query: 106 PMNISCSHYGVPTP-DFSWYK 125
+ C P F W K
Sbjct: 138 DFKLKCEPKEGSLPLQFEWQK 158
>pdb|2W9L|A Chain A, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
pdb|2W9L|B Chain B, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
pdb|2W9L|G Chain G, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
pdb|2W9L|J Chain J, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
pdb|2W9L|K Chain K, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
pdb|2W9L|O Chain O, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
pdb|2W9L|P Chain P, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
pdb|2W9L|T Chain T, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
pdb|2W9L|V Chain V, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
pdb|2W9L|X Chain X, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
pdb|2W9L|Y Chain Y, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
pdb|2W9L|Z Chain Z, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
Length = 124
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 50 NGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLV 87
+ S + N+ D Y C V A G +K I + VLV
Sbjct: 87 DASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVLV 124
>pdb|2J12|B Chain B, Ad37 Fibre Head In Complex With Car D1
pdb|2J1K|A Chain A, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|B Chain B, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|G Chain G, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|J Chain J, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|K Chain K, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|O Chain O, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|P Chain P, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|T Chain T, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|V Chain V, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|X Chain X, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|Y Chain Y, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|Z Chain Z, Cav-2 Fibre Head In Complex With Car D1
Length = 128
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 50 NGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLV 87
+ S + N+ D Y C V A G +K I + VLV
Sbjct: 90 DASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVLV 127
>pdb|1F5W|A Chain A, Dimeric Structure Of The Coxsackie Virus And Adenovirus
Receptor D1 Domain
pdb|1F5W|B Chain B, Dimeric Structure Of The Coxsackie Virus And Adenovirus
Receptor D1 Domain
pdb|1EAJ|A Chain A, Dimeric Structure Of The Coxsackie Virus And Adenovirus
Receptor D1 Domain At 1.35 Angstrom Resolution
pdb|1EAJ|B Chain B, Dimeric Structure Of The Coxsackie Virus And Adenovirus
Receptor D1 Domain At 1.35 Angstrom Resolution
Length = 126
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 50 NGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLV 87
+ S + N+ D Y C V A G +K I + VLV
Sbjct: 88 DASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVLV 125
>pdb|1JEW|R Chain R, Cryo-Em Structure Of Coxsackievirus B3(M Strain) With Its
Cellular Receptor, Coxsackievirus And Adenovirus
Receptor (Car)
Length = 120
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 50 NGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLV 87
+ S + N+ D Y C V A G +K I + VLV
Sbjct: 82 DASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVLV 119
>pdb|3MJ7|B Chain B, Crystal Structure Of The Complex Of Jaml And Coxsackie And
Adenovirus Receptor, Car
Length = 225
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 30/81 (37%), Gaps = 10/81 (12%)
Query: 50 NGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPP----FFKDEQQESVAIVVNH 105
+ S + N+ D Y C V A G +K + VLV P F D +E + +
Sbjct: 85 DASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFVDGSEE-----IGN 139
Query: 106 PMNISCSHYGVPTP-DFSWYK 125
+ C P F W K
Sbjct: 140 DFKLKCEPKEGSLPLQFEWQK 160
>pdb|3K74|B Chain B, Disruption Of Protein Dynamics By An Allosteric Effector
Antibody
Length = 115
Score = 27.3 bits (59), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 8/64 (12%)
Query: 32 NPGQVIKRY---LKDLLYVTRNGS-----FVINNIAEKDTNVYTCTVSNAAGSTSKTIQM 83
NPG +I +Y +K ++R+ + +N++ +DT VY C A G K
Sbjct: 50 NPGGIITKYAESVKGRFTISRDNAKNTLYLQMNSLTSEDTAVYYCAKDWATGLAKKGQGT 109
Query: 84 NVLV 87
V V
Sbjct: 110 QVTV 113
>pdb|2P02|A Chain A, Crystal Structure Of The Alpha Subunit Of Human S-
Adenosylmethionine Synthetase 2
Length = 396
Score = 27.3 bits (59), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 96 QESVAIVVNHPMNISCSHYG 115
Q S AI V+HP++IS HYG
Sbjct: 318 QVSYAIGVSHPLSISIFHYG 337
>pdb|1NCT|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
pdb|1NCU|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
Length = 106
Score = 27.3 bits (59), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 8/64 (12%)
Query: 76 STSKTIQMNVLVPPFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQS- 134
S+ T+ +L P S+ + SC G P P +W + G +L +
Sbjct: 8 SSKTTLAARILTKP-------RSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSAR 60
Query: 135 HYIT 138
H +T
Sbjct: 61 HQVT 64
>pdb|2PET|A Chain A, Lutheran Glycoprotein, N-Terminal Domains 1 And 2.
pdb|2PF6|A Chain A, Lutheran Glycoprotein, N-Terminal Domains 1 And 2
pdb|2PF6|B Chain B, Lutheran Glycoprotein, N-Terminal Domains 1 And 2
Length = 231
Score = 26.9 bits (58), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Query: 51 GSFVINNIAEKDTNVYTCTV-SNAAGSTSKTIQMNVLVPPFFKD--EQQESVAIVVNHPM 107
G V+ D Y C V + AAG+ T ++NV P + + +++++ +
Sbjct: 77 GRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDSAQ 136
Query: 108 NIS-C-SHYGVPTPDFSWYKDGSLLRI 132
I+ C S G P P +WY++G L +
Sbjct: 137 EIATCNSRNGNPAPKITWYRNGQRLEV 163
>pdb|2I24|N Chain N, Crystal Structure Analysis Of The Nurse Shark New
Antigen Receptor Pbla8 Variable Domain
pdb|2I25|N Chain N, Crystal Structure Analysis Of The Nurse Shark New
Antigen Receptor Pbla8 Variable Domain In Complex With
Lysozyme
pdb|2I25|O Chain O, Crystal Structure Analysis Of The Nurse Shark New
Antigen Receptor Pbla8 Variable Domain In Complex With
Lysozyme
Length = 121
Score = 26.9 bits (58), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 8/81 (9%)
Query: 4 TMNVEQAMLLDLIPMHSR------YNYTNLPQSRNPGQVIK--RYLKDLLYVTRNGSFVI 55
T +++ ++ + SR Y Y P SRN + RY++ + +++ S I
Sbjct: 11 TKETGESLTINCVVRDSRCVLSTGYWYRKPPGSRNEESISDGGRYVETVNRGSKSFSLRI 70
Query: 56 NNIAEKDTNVYTCTVSNAAGS 76
N++ KD+ Y C + GS
Sbjct: 71 NDLTVKDSGTYRCKPESRYGS 91
>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin
Length = 154
Score = 26.9 bits (58), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 101 IVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHY 136
+V C G P P+ W+KD + ++ H+
Sbjct: 53 VVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHF 88
>pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal
Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms
Resolution
Length = 154
Score = 26.9 bits (58), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 101 IVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHY 136
+V C G P P+ W+KD + ++ H+
Sbjct: 53 VVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHF 88
>pdb|3EOY|G Chain G, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|H Chain H, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|I Chain I, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|J Chain J, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|K Chain K, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|L Chain L, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
Length = 104
Score = 26.6 bits (57), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 96 QESVAIVVNHPMNISCSHYGVPTPDFSW-YKDGSLLRI 132
+ V I N+P+ +SC++ G +P W + G R+
Sbjct: 10 EPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRL 47
Score = 26.2 bits (56), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 57 NIAEKDTNVYTCTVSNAAGSTSKTIQMNVLV 87
++ +DT YTC VS G++ +++ ++V
Sbjct: 73 SVTREDTGTYTCMVSEEGGNSYGEVKVKLIV 103
>pdb|2WO3|B Chain B, Crystal Structure Of The Epha4-Ephrina2 Complex
Length = 157
Score = 26.2 bits (56), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 98 SVAIVVNHPMNISCSHYGVPTP 119
+V + +N ++I C HYG P P
Sbjct: 31 TVEVSINDYLDIYCPHYGAPLP 52
>pdb|1WWC|A Chain A, Nt3 Binding Domain Of Human Trkc Receptor
Length = 118
Score = 26.2 bits (56), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 22/53 (41%)
Query: 51 GSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKDEQQESVAIVV 103
G + N + YT N G+ ++TI + L PF DE + I V
Sbjct: 65 GCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFPVDEVSPTPPITV 117
>pdb|2KKQ|A Chain A, Solution Nmr Structure Of The Ig-Like C2-Type 2 Domain Of
Human Myotilin. Northeast Structural Genomics Target
Hr3158
Length = 116
Score = 26.2 bits (56), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 21/38 (55%)
Query: 52 SFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPP 89
+ +I ++ +KD YT + N AG T+ +++V P
Sbjct: 74 TLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTARP 111
>pdb|1FU5|A Chain A, Nmr Structure Of The N-Sh2 Domain Of The P85 Subunit Of
Pi3- Kinase Complexed To A Doubly Phosphorylated Peptide
Derived From Polyomavirus Middle T Antigen
pdb|1FU6|A Chain A, Nmr Structure Of The N-Sh2 Domain Of The P85 Subunit Of
Pi3- Kinase
Length = 111
Score = 26.2 bits (56), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 16/89 (17%)
Query: 34 GQVIKRYLKDLLYVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKD 93
G + + + + L T +G+F++ + + K YT T+ G +K+I++ F +D
Sbjct: 16 GDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLR--KGGNNKSIKI------FHRD 67
Query: 94 EQQ--------ESVAIVVNHPMNISCSHY 114
+ SV ++NH N S + Y
Sbjct: 68 GKYGFSDPLTFNSVVELINHYRNESLAQY 96
>pdb|2PNA|A Chain A, Structure Of An Sh2 Domain Of The P85 Alpha Subunit Of
Phosphatidylinositol-3-Oh Kinase
pdb|2PNB|A Chain A, Structure Of An Sh2 Domain Of The P85 Alpha Subunit Of
Phosphatidylinositol-3-Oh Kinase
Length = 104
Score = 26.2 bits (56), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 16/89 (17%)
Query: 34 GQVIKRYLKDLLYVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKD 93
G + + + + L T +G+F++ + + K YT T+ N L+ F +D
Sbjct: 9 GDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGN--------NKLIKIFHRD 60
Query: 94 EQQ--------ESVAIVVNHPMNISCSHY 114
+ SV ++NH N S + Y
Sbjct: 61 GKYGFSDPLTFNSVVELINHYRNESLAQY 89
>pdb|2OCW|A Chain A, Solution Structure Of Human Secretory Component
pdb|3CHN|S Chain S, Solution Structure Of Human Secretory Iga1
pdb|3CM9|S Chain S, Solution Structure Of Human Siga2
Length = 585
Score = 25.8 bits (55), Expect = 8.3, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 16/37 (43%)
Query: 52 SFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVP 88
S VIN + D Y C + + S K + VL P
Sbjct: 186 SVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKP 222
>pdb|1OO3|A Chain A, P395s Mutant Of The P85 Regulatory Subunit Of The N-
Terminal Src Homology 2 Domain Of Pi3-Kinase
pdb|1OO4|A Chain A, P395s Mutant Of The P85 Regulatory Subunit Of The N-
Terminal Src Homology 2 Domain Of Pi3-Kinase Complexed
To A Peptide Derived From Pdgfr
Length = 111
Score = 25.8 bits (55), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 16/89 (17%)
Query: 34 GQVIKRYLKDLLYVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKD 93
G + + + + L T +G+F++ + + K YT T+ G +K+I++ F +D
Sbjct: 16 GDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLR--KGGNNKSIKI------FHRD 67
Query: 94 EQQ--------ESVAIVVNHPMNISCSHY 114
+ SV ++NH N S + Y
Sbjct: 68 GKYGFSDSLTFNSVVELINHYRNESLAQY 96
>pdb|2IUG|A Chain A, Crystal Structure Of The Pi3-Kinase P85 N-Terminal Sh2
Domain
pdb|2IUH|A Chain A, Crystal Structure Of The Pi3-Kinase P85 N-Terminal Sh2
Domain In Complex With C-Kit Phosphotyrosyl Peptide
pdb|2IUI|A Chain A, Crystal Structure Of The Pi3-Kinase P85 N-Terminal Sh2
Domain In Complex With Pdgfr Phosphotyrosyl Peptide
pdb|2IUI|B Chain B, Crystal Structure Of The Pi3-Kinase P85 N-Terminal Sh2
Domain In Complex With Pdgfr Phosphotyrosyl Peptide
Length = 120
Score = 25.8 bits (55), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 16/89 (17%)
Query: 34 GQVIKRYLKDLLYVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKD 93
G + + + + L T +G+F++ + + K YT T+ N L+ F +D
Sbjct: 16 GDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGN--------NKLIKIFHRD 67
Query: 94 EQQ--------ESVAIVVNHPMNISCSHY 114
+ SV ++NH N S + Y
Sbjct: 68 GKYGFSDPLTFSSVVELINHYRNESLAQY 96
>pdb|3K0W|A Chain A, Crystal Structure Of The Tandem Ig-Like C2-Type 2 Domains
Of The Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
Length = 218
Score = 25.8 bits (55), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 15/90 (16%)
Query: 52 SFVINNIAEKDTNVYTCTVSNA-AGSTSKTIQMNVL-VPPFFK---DEQQESVAIVVNHP 106
+ N + KD Y C V+N S+ Q++V +P F+ D ES + P
Sbjct: 66 ELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEP 125
Query: 107 MN----------ISCSHYGVPTPDFSWYKD 126
+ + C G P P + W+K+
Sbjct: 126 TSQKLMPGSTLVLQCVAVGSPIPHYQWFKN 155
>pdb|2RD0|B Chain B, Structure Of A Human P110alpha/p85alpha Complex
pdb|4A55|B Chain B, Crystal Structure Of P110alpha In Complex With Ish2 Of
P85alpha And The Inhibitor Pik-108
Length = 279
Score = 25.8 bits (55), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 16/89 (17%)
Query: 34 GQVIKRYLKDLLYVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKD 93
G + + + + L T +G+F++ + + K YT T+ N L+ F +D
Sbjct: 15 GDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGN--------NKLIKIFHRD 66
Query: 94 EQQ--------ESVAIVVNHPMNISCSHY 114
+ SV ++NH N S + Y
Sbjct: 67 GKYGFSDPLTFSSVVELINHYRNESLAQY 95
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,380,611
Number of Sequences: 62578
Number of extensions: 168547
Number of successful extensions: 904
Number of sequences better than 100.0: 128
Number of HSP's better than 100.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 718
Number of HSP's gapped (non-prelim): 211
length of query: 148
length of database: 14,973,337
effective HSP length: 90
effective length of query: 58
effective length of database: 9,341,317
effective search space: 541796386
effective search space used: 541796386
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)