Query psy6361
Match_columns 148
No_of_seqs 143 out of 2051
Neff 11.3
Searched_HMMs 46136
Date Sat Aug 17 00:32:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6361.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6361hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3513|consensus 99.9 8.2E-21 1.8E-25 140.4 13.6 120 7-135 250-377 (1051)
2 PHA02826 IL-1 receptor-like pr 99.8 3.5E-18 7.5E-23 110.2 14.2 135 5-146 29-195 (227)
3 KOG3513|consensus 99.8 3E-18 6.4E-23 127.1 13.4 133 5-146 338-486 (1051)
4 KOG4194|consensus 99.8 1.7E-18 3.6E-23 121.9 10.4 121 5-134 619-752 (873)
5 KOG4221|consensus 99.8 9.6E-18 2.1E-22 125.0 11.5 120 7-135 246-374 (1381)
6 cd05762 Ig8_MLCK Eighth immuno 99.7 6.7E-16 1.5E-20 87.6 9.0 78 5-90 7-95 (98)
7 cd05851 Ig3_Contactin-1 Third 99.7 2.2E-15 4.8E-20 83.8 9.8 73 5-85 8-87 (88)
8 cd04975 Ig4_SCFR_like Fourth i 99.6 2.5E-15 5.5E-20 85.4 9.0 76 3-86 8-100 (101)
9 cd05745 Ig3_Peroxidasin Third 99.6 2.2E-15 4.7E-20 81.3 7.9 66 12-85 1-74 (74)
10 PHA02785 IL-beta-binding prote 99.6 5.5E-14 1.2E-18 95.7 16.0 115 8-132 131-266 (326)
11 cd05863 Ig2_VEGFR-3 Second imm 99.6 4.6E-15 1E-19 78.0 8.3 62 16-85 1-65 (67)
12 KOG4194|consensus 99.6 1.5E-15 3.2E-20 107.4 8.1 117 6-129 511-652 (873)
13 cd05852 Ig5_Contactin-1 Fifth 99.6 4.1E-15 9E-20 79.8 7.9 65 13-85 1-73 (73)
14 cd05894 Ig_C5_MyBP-C C5 immuno 99.6 1.2E-14 2.6E-19 80.5 9.1 72 6-85 3-86 (86)
15 cd05867 Ig4_L1-CAM_like Fourth 99.6 9.4E-15 2E-19 79.2 8.4 65 13-85 1-75 (76)
16 PHA02785 IL-beta-binding prote 99.6 4.4E-14 9.6E-19 96.2 13.3 112 7-127 35-164 (326)
17 cd05859 Ig4_PDGFR-alpha Fourth 99.6 1.6E-14 3.4E-19 82.3 8.9 74 5-86 10-100 (101)
18 cd05737 Ig_Myomesin_like_C C-t 99.6 1.4E-14 3E-19 81.4 8.3 74 3-84 6-91 (92)
19 cd04968 Ig3_Contactin_like Thi 99.6 3E-14 6.5E-19 79.3 9.1 72 6-85 9-87 (88)
20 KOG4221|consensus 99.6 1.4E-13 2.9E-18 103.4 14.9 120 6-134 148-282 (1381)
21 cd05728 Ig4_Contactin-2-like F 99.6 2.1E-14 4.7E-19 79.4 8.2 74 4-85 5-85 (85)
22 cd05854 Ig6_Contactin-2 Sixth 99.6 3.5E-14 7.6E-19 78.5 8.9 70 14-89 1-85 (85)
23 cd05892 Ig_Myotilin_C C-termin 99.6 2.9E-14 6.2E-19 76.8 8.1 62 16-85 1-75 (75)
24 cd04969 Ig5_Contactin_like Fif 99.6 3E-14 6.6E-19 76.6 8.0 65 13-85 1-73 (73)
25 cd05730 Ig3_NCAM-1_like Third 99.6 9.5E-14 2.1E-18 78.4 10.1 74 6-87 11-94 (95)
26 cd05740 Ig_CEACAM_D4 Fourth im 99.6 5.5E-14 1.2E-18 78.6 8.9 70 7-85 12-90 (91)
27 cd05723 Ig4_Neogenin Fourth im 99.6 4.3E-14 9.4E-19 75.5 8.1 63 15-85 1-71 (71)
28 cd05868 Ig4_NrCAM Fourth immun 99.6 4E-14 8.7E-19 76.6 8.0 65 13-85 1-75 (76)
29 cd05876 Ig3_L1-CAM Third immun 99.6 6E-14 1.3E-18 75.0 8.4 62 16-85 1-70 (71)
30 cd05735 Ig8_DSCAM Eight immuno 99.6 5E-14 1.1E-18 78.4 8.2 70 13-90 1-86 (88)
31 cd04976 Ig2_VEGFR Second immun 99.6 6.8E-14 1.5E-18 74.7 8.4 62 16-85 1-69 (71)
32 cd04978 Ig4_L1-NrCAM_like Four 99.6 6E-14 1.3E-18 76.0 8.3 65 13-85 1-75 (76)
33 cd05893 Ig_Palladin_C C-termin 99.6 3.4E-14 7.3E-19 76.6 7.2 62 16-85 1-75 (75)
34 cd04970 Ig6_Contactin_like Six 99.5 9.2E-14 2E-18 76.9 8.8 70 14-89 1-85 (85)
35 cd05853 Ig6_Contactin-4 Sixth 99.5 7.2E-14 1.6E-18 76.8 8.3 70 14-89 1-85 (85)
36 cd04972 Ig_TrkABC_d4 Fourth do 99.5 8.8E-14 1.9E-18 77.8 8.7 72 6-85 8-90 (90)
37 cd05857 Ig2_FGFR Second immuno 99.5 1.2E-13 2.6E-18 76.4 8.7 70 8-85 4-85 (85)
38 cd05746 Ig4_Peroxidasin Fourth 99.5 8.5E-14 1.8E-18 74.0 7.6 60 16-83 1-68 (69)
39 cd05725 Ig3_Robo Third immunog 99.5 1.2E-13 2.5E-18 73.5 8.1 62 16-85 1-69 (69)
40 cd05726 Ig4_Robo Fhird immunog 99.5 2.4E-13 5.1E-18 76.0 9.1 67 13-87 1-83 (90)
41 cd05748 Ig_Titin_like Immunogl 99.5 1.5E-13 3.3E-18 74.0 8.0 62 16-85 2-74 (74)
42 cd05763 Ig_1 Subgroup of the i 99.5 2.5E-13 5.3E-18 73.4 8.9 62 16-85 1-74 (75)
43 cd05744 Ig_Myotilin_C_like Imm 99.5 1.2E-13 2.6E-18 74.6 7.6 62 16-85 1-75 (75)
44 cd05856 Ig2_FGFRL1-like Second 99.5 8.9E-14 1.9E-18 76.3 7.3 69 8-84 4-81 (82)
45 cd05870 Ig5_NCAM-2 Fifth immun 99.5 1.7E-13 3.8E-18 77.8 8.6 73 5-85 8-98 (98)
46 cd05864 Ig2_VEGFR-2 Second imm 99.5 1.5E-13 3.3E-18 73.0 7.8 61 16-84 1-67 (70)
47 cd05747 Ig5_Titin_like M5, fif 99.5 2.3E-13 5.1E-18 76.3 8.9 70 6-83 11-91 (92)
48 cd05865 Ig1_NCAM-1 First immun 99.5 2.8E-13 6E-18 76.4 8.6 72 7-85 9-95 (96)
49 cd05891 Ig_M-protein_C C-termi 99.5 1.9E-13 4.2E-18 76.6 7.9 74 3-84 6-91 (92)
50 cd05760 Ig2_PTK7 Second immuno 99.5 3.4E-13 7.3E-18 73.2 8.5 62 16-85 1-74 (77)
51 cd05732 Ig5_NCAM-1_like Fifth 99.5 2.3E-13 5E-18 76.9 8.2 72 6-85 9-96 (96)
52 cd05869 Ig5_NCAM-1 Fifth immun 99.5 2.2E-13 4.9E-18 77.2 8.0 70 8-85 12-97 (97)
53 PF07679 I-set: Immunoglobulin 99.5 2.2E-13 4.8E-18 76.1 7.8 73 5-85 7-90 (90)
54 cd05764 Ig_2 Subgroup of the i 99.5 3.4E-13 7.5E-18 72.6 8.2 65 13-85 1-74 (74)
55 cd05724 Ig2_Robo Second immuno 99.5 6.7E-13 1.5E-17 73.5 9.6 71 6-84 4-85 (86)
56 cd05765 Ig_3 Subgroup of the i 99.5 2.9E-13 6.3E-18 74.1 7.9 65 13-85 1-81 (81)
57 cd05756 Ig1_IL1R_like First im 99.5 3.6E-13 7.7E-18 75.7 8.4 71 7-85 8-94 (94)
58 cd05771 IgC_Tapasin_R Tapasin- 99.5 7.2E-13 1.6E-17 79.9 9.9 77 52-129 2-80 (139)
59 cd04973 Ig1_FGFR First immunog 99.5 4.6E-13 9.9E-18 73.0 8.2 69 7-84 3-78 (79)
60 cd05739 Ig3_RPTP_IIa_LAR_like 99.5 4.7E-13 1E-17 71.0 8.0 61 13-83 1-68 (69)
61 cd05731 Ig3_L1-CAM_like Third 99.5 3.7E-13 8E-18 71.9 7.6 62 16-85 1-70 (71)
62 cd04974 Ig3_FGFR Third immunog 99.5 2.5E-13 5.4E-18 75.9 6.9 65 13-85 1-89 (90)
63 KOG4222|consensus 99.5 1.5E-13 3.3E-18 102.6 7.6 114 7-129 234-355 (1281)
64 KOG4222|consensus 99.5 3E-13 6.5E-18 101.1 8.2 117 7-132 140-268 (1281)
65 cd05752 Ig1_FcgammaR_like Frst 99.5 4.1E-13 8.8E-18 72.9 6.4 60 6-73 8-68 (78)
66 cd05738 Ig2_RPTP_IIa_LAR_like 99.4 1.3E-12 2.8E-17 70.4 8.2 62 16-85 1-73 (74)
67 cd04971 Ig_TrKABC_d5 Fifth dom 99.4 1.3E-12 2.7E-17 71.5 8.2 59 18-84 3-79 (81)
68 cd05866 Ig1_NCAM-2 First immun 99.4 1.4E-12 3E-17 73.0 8.2 72 5-85 7-91 (92)
69 cd05773 Ig8_hNephrin_like Eigh 99.4 2.1E-12 4.5E-17 74.7 9.2 70 12-89 22-108 (109)
70 cd05743 Ig_Perlecan_D2_like Im 99.4 7.2E-13 1.6E-17 72.1 6.9 60 13-80 1-71 (78)
71 cd07702 Ig2_VEGFR-1 Second imm 99.4 1.6E-12 3.4E-17 69.3 7.6 58 16-81 1-66 (72)
72 cd05858 Ig3_FGFR-2 Third immun 99.4 1.7E-12 3.7E-17 72.5 7.6 65 13-85 1-89 (90)
73 cd05722 Ig1_Neogenin First imm 99.4 3.6E-12 7.9E-17 71.9 9.0 71 6-84 7-94 (95)
74 cd05855 Ig_TrkB_d5 Fifth domai 99.4 1.4E-12 3.1E-17 70.7 6.8 59 18-84 3-77 (79)
75 cd05848 Ig1_Contactin-5 First 99.4 2.3E-12 4.9E-17 72.6 7.8 58 12-77 18-85 (94)
76 cd05850 Ig1_Contactin-2 First 99.4 4.3E-12 9.4E-17 71.4 8.5 64 12-83 18-92 (94)
77 cd05736 Ig2_Follistatin_like S 99.4 7E-12 1.5E-16 67.8 8.8 62 17-86 2-74 (76)
78 cd05849 Ig1_Contactin-1 First 99.4 3.8E-12 8.2E-17 71.5 7.8 64 12-83 18-91 (93)
79 cd05749 Ig2_Tyro3_like Second 99.4 5.7E-12 1.2E-16 68.8 8.2 63 5-76 5-72 (81)
80 cd07693 Ig1_Robo First immunog 99.4 8.3E-12 1.8E-16 70.9 8.8 72 6-85 9-99 (100)
81 cd05734 Ig7_DSCAM Seventh immu 99.4 7.5E-12 1.6E-16 68.2 8.2 61 16-84 1-78 (79)
82 cd05753 Ig2_FcgammaR_like Seco 99.4 2.8E-12 6.2E-17 70.5 6.2 70 8-84 9-82 (83)
83 cd05758 Ig5_KIRREL3-like Fifth 99.4 1.4E-11 3E-16 69.9 9.0 71 6-83 9-97 (98)
84 cd05733 Ig6_L1-CAM_like Sixth 99.4 1E-11 2.2E-16 67.4 7.9 53 16-76 1-68 (77)
85 cd05874 Ig6_NrCAM Sixth immuno 99.3 2.2E-11 4.7E-16 66.0 8.6 54 16-77 1-69 (77)
86 cd05750 Ig_Pro_neuregulin Immu 99.3 1.1E-11 2.4E-16 66.8 7.5 58 16-81 1-73 (75)
87 cd05861 Ig1_PDGFR-alphabeta Fr 99.3 1.4E-11 3E-16 67.9 7.7 66 13-86 1-83 (84)
88 cd04977 Ig1_NCAM-1_like First 99.3 1.2E-11 2.6E-16 69.3 7.5 70 6-84 8-91 (92)
89 cd05742 Ig1_VEGFR_like First i 99.3 7.9E-12 1.7E-16 68.9 6.6 65 13-85 1-83 (84)
90 cd05754 Ig3_Perlecan_like Thir 99.3 1.7E-11 3.8E-16 67.7 7.8 70 6-83 9-84 (85)
91 PHA03376 BARF1; Provisional 99.3 5.4E-11 1.2E-15 73.2 10.3 114 7-126 20-161 (221)
92 cd05882 Ig1_Necl-1 First (N-te 99.3 1.9E-11 4.1E-16 68.8 7.8 61 5-73 4-84 (95)
93 cd05875 Ig6_hNeurofascin_like 99.3 4.5E-11 9.8E-16 64.8 8.9 54 16-77 1-69 (77)
94 cd04979 Ig_Semaphorin_C Immuno 99.3 5.2E-11 1.1E-15 66.3 8.8 72 6-86 4-87 (89)
95 cd05729 Ig2_FGFR_like Second i 99.3 4.4E-11 9.5E-16 65.9 8.4 69 8-84 4-84 (85)
96 cd05757 Ig2_IL1R_like Second i 99.3 9.8E-11 2.1E-15 65.5 9.3 74 6-82 3-83 (92)
97 cd05895 Ig_Pro_neuregulin-1 Im 99.3 5.3E-11 1.2E-15 64.3 7.4 58 16-81 1-74 (76)
98 cd07701 Ig1_Necl-3 First (N-te 99.3 7.3E-11 1.6E-15 66.5 7.9 71 5-84 4-94 (95)
99 cd05871 Ig_Semaphorin_classIII 99.2 2.2E-10 4.8E-15 64.0 9.1 73 5-86 3-89 (91)
100 cd04967 Ig1_Contactin First Ig 99.2 1.1E-10 2.4E-15 65.3 6.9 58 11-76 17-84 (91)
101 cd05873 Ig_Sema4D_like Immunog 99.2 1.3E-10 2.9E-15 64.1 6.8 60 6-74 4-71 (87)
102 cd05896 Ig1_IL1RAPL-1_like Fir 99.2 2.8E-10 6.1E-15 64.2 7.3 78 6-84 8-103 (104)
103 cd05717 Ig1_Necl-1-3_like Firs 99.1 6.1E-10 1.3E-14 62.8 8.3 71 5-84 4-94 (95)
104 smart00408 IGc2 Immunoglobulin 99.1 5.4E-10 1.2E-14 57.6 7.3 55 12-74 1-62 (63)
105 cd05862 Ig1_VEGFR First immuno 99.1 4.5E-10 9.7E-15 62.1 7.2 68 13-86 1-85 (86)
106 PF13895 Ig_2: Immunoglobulin 99.1 7.1E-10 1.5E-14 60.2 7.5 71 7-85 8-80 (80)
107 cd05727 Ig2_Contactin-2-like S 99.1 5.6E-10 1.2E-14 62.5 7.0 63 6-76 11-85 (96)
108 cd05898 Ig5_KIRREL3 Fifth immu 99.1 1.7E-09 3.7E-14 61.0 9.0 71 6-83 9-97 (98)
109 cd07690 Ig1_CD4 First immunogl 99.1 5.6E-10 1.2E-14 62.5 5.5 60 8-75 2-89 (94)
110 PF00047 ig: Immunoglobulin do 99.0 1E-09 2.2E-14 57.2 6.0 51 13-70 1-64 (64)
111 cd05845 Ig2_L1-CAM_like Second 99.0 3E-09 6.5E-14 59.5 7.2 64 5-76 10-84 (95)
112 cd05860 Ig4_SCFR Fourth immuno 99.0 6.6E-09 1.4E-13 58.5 8.0 75 5-86 10-100 (101)
113 cd05774 Ig_CEACAM_D1 First imm 99.0 5.8E-09 1.3E-13 59.7 7.9 61 7-75 7-94 (105)
114 cd05897 Ig2_IL1R2_like Second 99.0 8.7E-09 1.9E-13 57.7 8.4 67 7-76 4-80 (95)
115 PHA02826 IL-1 receptor-like pr 99.0 7.4E-09 1.6E-13 67.2 8.8 59 8-74 139-211 (227)
116 cd05885 Ig2_Necl-4 Second immu 99.0 5E-09 1.1E-13 56.7 6.6 54 16-76 2-68 (80)
117 cd05741 Ig_CEACAM_D1_like Firs 99.0 9.1E-09 2E-13 57.5 7.7 56 13-76 1-82 (92)
118 smart00409 IG Immunoglobulin. 98.9 2.9E-08 6.4E-13 54.0 9.5 71 7-85 3-85 (86)
119 smart00410 IG_like Immunoglobu 98.9 2.9E-08 6.4E-13 54.0 9.5 71 7-85 3-85 (86)
120 cd05851 Ig3_Contactin-1 Third 98.9 7.3E-09 1.6E-13 57.5 6.5 58 88-146 1-60 (88)
121 cd05747 Ig5_Titin_like M5, fif 98.9 1.4E-08 3E-13 56.9 7.5 49 88-137 3-51 (92)
122 cd05878 Ig_Aggrecan_like Immun 98.9 2.6E-08 5.6E-13 57.6 8.8 75 12-86 1-107 (110)
123 cd05713 Ig_MOG_like Immunoglob 98.9 1.8E-08 4E-13 57.2 8.0 35 51-85 65-99 (100)
124 cd05877 Ig_LP_like Immunoglobu 98.9 1.3E-08 2.8E-13 58.5 7.3 73 12-86 1-103 (106)
125 cd05762 Ig8_MLCK Eighth immuno 98.9 2E-08 4.4E-13 56.9 7.6 48 89-137 1-48 (98)
126 cd05900 Ig_Aggrecan Immunoglob 98.9 3.6E-08 7.8E-13 57.1 8.6 75 12-86 1-109 (112)
127 cd05872 Ig_Sema4B_like Immunog 98.9 2.8E-08 6.2E-13 54.5 7.5 57 6-71 4-67 (85)
128 cd05749 Ig2_Tyro3_like Second 98.9 9.5E-09 2.1E-13 56.1 5.6 37 96-132 5-42 (81)
129 cd05714 Ig_CSPGs_LP Immunoglob 98.9 2.5E-08 5.4E-13 57.3 7.4 73 12-86 1-103 (106)
130 cd05881 Ig1_Necl-2 First (N-te 98.9 3.9E-08 8.5E-13 55.1 7.9 63 5-75 4-86 (95)
131 cd05846 Ig1_MRC-OX-2_like Firs 98.8 2.9E-08 6.3E-13 56.1 7.3 66 13-85 1-96 (97)
132 cd04983 IgV_TCR_alpha_like Imm 98.8 1.4E-08 3.1E-13 58.6 5.8 64 3-74 3-93 (109)
133 cd05775 Ig_SLAM-CD84_like_N N- 98.8 2.6E-08 5.6E-13 56.3 6.7 67 11-85 2-96 (97)
134 cd05737 Ig_Myomesin_like_C C-t 98.8 4.6E-08 1E-12 54.7 7.5 41 96-136 8-48 (92)
135 cd04975 Ig4_SCFR_like Fourth i 98.8 9E-08 1.9E-12 54.5 7.3 40 96-135 10-50 (101)
136 cd05751 Ig1_LILRB1_like First 98.8 3.6E-08 7.8E-13 55.1 5.6 57 8-73 11-75 (91)
137 cd05728 Ig4_Contactin-2-like F 98.7 8.8E-08 1.9E-12 52.8 6.9 51 96-146 6-58 (85)
138 cd05718 Ig1_PVR_like First imm 98.7 9.3E-08 2E-12 54.1 7.2 67 14-85 1-97 (98)
139 cd05745 Ig3_Peroxidasin Third 98.7 5.4E-08 1.2E-12 52.2 5.7 44 103-146 1-47 (74)
140 cd05899 IgV_TCR_beta Immunoglo 98.7 4.2E-08 9.1E-13 56.8 5.6 61 4-73 4-94 (110)
141 cd07693 Ig1_Robo First immunog 98.7 4.8E-08 1E-12 55.3 5.7 44 88-132 1-44 (100)
142 PF07679 I-set: Immunoglobulin 98.7 1.7E-07 3.7E-12 52.0 7.9 49 89-138 1-49 (90)
143 cd05880 Ig_EVA1 Immunoglobulin 98.7 1.4E-07 3E-12 55.0 7.6 67 6-76 6-104 (115)
144 cd05879 Ig_P0 Immunoglobulin ( 98.7 1.9E-07 4.1E-12 54.4 7.8 67 6-76 6-105 (116)
145 cd05887 Ig1_Nectin-3_like Firs 98.7 2.5E-07 5.4E-12 52.0 7.8 65 14-85 1-95 (96)
146 PHA02987 Ig domain OX-2-like p 98.7 4.6E-07 1E-11 56.2 9.5 74 6-87 23-123 (189)
147 cd05848 Ig1_Contactin-5 First 98.7 2.3E-07 5.1E-12 52.1 7.4 45 89-134 2-49 (94)
148 cd05886 Ig1_Nectin-1_like Firs 98.7 4.2E-07 9.1E-12 51.5 8.2 36 50-85 62-98 (99)
149 cd05859 Ig4_PDGFR-alpha Fourth 98.7 2.3E-07 4.9E-12 52.8 7.1 37 98-134 12-48 (101)
150 cd04982 IgV_TCR_gamma Immunogl 98.7 1.4E-07 3.1E-12 55.0 6.5 61 4-72 4-98 (116)
151 cd04980 IgV_L_kappa Immunoglob 98.6 7.3E-08 1.6E-12 55.4 5.0 61 5-73 7-93 (106)
152 cd05715 Ig_P0-like Immunoglobu 98.6 4E-07 8.7E-12 53.2 7.9 67 6-76 6-105 (116)
153 cd05759 Ig2_KIRREL3-like Secon 98.6 2.4E-07 5.3E-12 50.6 6.5 53 16-76 2-71 (82)
154 cd04968 Ig3_Contactin_like Thi 98.6 2.2E-07 4.8E-12 51.5 6.2 44 89-133 2-45 (88)
155 cd05901 Ig_Versican Immunoglob 98.6 9.3E-07 2E-11 51.3 8.8 75 12-86 1-114 (117)
156 cd04984 IgV_L_lambda Immunoglo 98.6 1.6E-07 3.5E-12 53.1 5.6 56 9-72 2-84 (98)
157 PF07686 V-set: Immunoglobulin 98.6 6.6E-08 1.4E-12 55.9 4.0 61 5-73 8-101 (114)
158 cd05869 Ig5_NCAM-1 Fifth immun 98.6 5.4E-07 1.2E-11 50.9 7.6 44 88-132 2-45 (97)
159 cd05888 Ig1_Nectin-4_like Frst 98.6 5.4E-07 1.2E-11 51.2 7.6 36 50-85 63-99 (100)
160 cd05739 Ig3_RPTP_IIa_LAR_like 98.6 2.4E-07 5.2E-12 49.0 5.6 32 104-135 1-32 (69)
161 cd05902 Ig_Neurocan Immunoglob 98.6 5E-07 1.1E-11 52.1 7.3 74 12-86 1-107 (110)
162 cd05852 Ig5_Contactin-1 Fifth 98.6 1.9E-07 4.2E-12 49.9 5.2 43 104-146 1-46 (73)
163 KOG3515|consensus 98.6 2.1E-07 4.5E-12 68.8 6.9 116 9-132 18-142 (741)
164 cd04972 Ig_TrkABC_d4 Fourth do 98.6 5E-07 1.1E-11 50.3 7.0 39 96-134 7-45 (90)
165 cd05891 Ig_M-protein_C C-termi 98.6 5E-07 1.1E-11 50.6 6.9 41 96-136 8-48 (92)
166 cd05894 Ig_C5_MyBP-C C5 immuno 98.6 6.1E-07 1.3E-11 49.6 7.0 36 98-133 4-39 (86)
167 cd07694 Ig2_CD4 Second immunog 98.6 1.4E-06 3.1E-11 47.5 8.1 73 7-85 8-85 (88)
168 cd05752 Ig1_FcgammaR_like Frst 98.5 7.7E-07 1.7E-11 48.2 7.0 42 89-131 1-43 (78)
169 cd05730 Ig3_NCAM-1_like Third 98.5 7.6E-07 1.6E-11 50.0 7.0 37 97-133 11-47 (95)
170 cd05716 Ig_pIgR Immunoglobulin 98.5 4.7E-07 1E-11 51.2 6.2 60 8-74 2-87 (98)
171 cd05722 Ig1_Neogenin First imm 98.5 5E-07 1.1E-11 50.8 6.0 39 96-134 6-44 (95)
172 cd05857 Ig2_FGFR Second immuno 98.5 4.8E-07 1E-11 49.7 5.8 37 99-135 4-40 (85)
173 cd00099 IgV Immunoglobulin var 98.5 3.9E-07 8.5E-12 52.1 5.6 59 9-75 2-91 (105)
174 PF13927 Ig_3: Immunoglobulin 98.5 2.3E-07 4.9E-12 49.5 4.2 50 16-72 18-75 (75)
175 cd05849 Ig1_Contactin-1 First 98.5 1.1E-06 2.4E-11 49.3 7.1 43 89-132 2-47 (93)
176 cd05892 Ig_Myotilin_C C-termin 98.5 5E-07 1.1E-11 48.6 5.4 26 107-132 1-26 (75)
177 cd07706 IgV_TCR_delta Immunogl 98.5 2.9E-07 6.3E-12 53.7 4.9 61 5-72 6-93 (116)
178 cd05743 Ig_Perlecan_D2_like Im 98.5 7.4E-07 1.6E-11 48.2 5.9 33 104-136 1-33 (78)
179 cd05850 Ig1_Contactin-2 First 98.5 1.2E-06 2.7E-11 49.2 6.9 43 89-132 2-47 (94)
180 cd05863 Ig2_VEGFR-3 Second imm 98.5 2.8E-07 6E-12 48.4 3.9 37 107-145 1-37 (67)
181 cd04973 Ig1_FGFR First immunog 98.5 8.4E-07 1.8E-11 48.2 5.8 48 97-145 2-51 (79)
182 cd05883 Ig2_Necl-2 Second immu 98.5 1.8E-06 4E-11 47.0 6.8 64 16-86 2-80 (82)
183 cd07700 IgV_CD8_beta Immunoglo 98.4 6.4E-07 1.4E-11 51.6 5.3 56 9-71 2-92 (107)
184 cd05724 Ig2_Robo Second immuno 98.4 1.6E-06 3.4E-11 47.7 6.7 51 96-146 3-58 (86)
185 cd05867 Ig4_L1-CAM_like Fourth 98.4 7.1E-07 1.5E-11 48.1 5.0 30 104-133 1-30 (76)
186 cd05889 Ig1_DNAM-1_like First 98.4 3.3E-06 7.1E-11 47.5 7.8 32 50-81 59-91 (96)
187 cd04969 Ig5_Contactin_like Fif 98.4 1.2E-06 2.7E-11 46.7 5.6 43 104-146 1-46 (73)
188 cd05758 Ig5_KIRREL3-like Fifth 98.4 4E-06 8.7E-11 47.4 7.8 44 88-133 2-46 (98)
189 cd05864 Ig2_VEGFR-2 Second imm 98.4 6.5E-07 1.4E-11 47.4 4.2 40 107-146 1-41 (70)
190 cd05868 Ig4_NrCAM Fourth immun 98.4 1.2E-06 2.5E-11 47.3 5.2 29 104-132 1-29 (76)
191 cd05732 Ig5_NCAM-1_like Fifth 98.4 1.7E-06 3.7E-11 48.6 6.1 43 88-132 2-44 (96)
192 cd05893 Ig_Palladin_C C-termin 98.4 1.3E-06 2.7E-11 47.0 5.2 26 107-132 1-26 (75)
193 cd05866 Ig1_NCAM-2 First immun 98.4 4.3E-06 9.4E-11 46.7 7.4 50 96-146 7-63 (92)
194 cd05740 Ig_CEACAM_D4 Fourth im 98.4 2.7E-06 5.9E-11 47.5 6.4 37 96-133 10-46 (91)
195 cd05711 Ig_FcalphaRI Immunoglo 98.4 1.1E-06 2.5E-11 49.3 4.9 56 7-71 9-75 (94)
196 cd05865 Ig1_NCAM-1 First immun 98.4 3.4E-06 7.3E-11 47.6 6.6 37 96-132 7-45 (96)
197 cd05870 Ig5_NCAM-2 Fifth immun 98.3 5.5E-06 1.2E-10 46.9 7.4 41 88-130 2-44 (98)
198 cd04976 Ig2_VEGFR Second immun 98.3 1.3E-06 2.8E-11 46.4 4.5 39 107-145 1-41 (71)
199 cd05773 Ig8_hNephrin_like Eigh 98.3 3.5E-06 7.7E-11 48.6 6.6 45 87-132 3-51 (109)
200 cd05723 Ig4_Neogenin Fourth im 98.3 2.4E-06 5.1E-11 45.4 5.2 32 106-137 1-32 (71)
201 cd07702 Ig2_VEGFR-1 Second imm 98.3 2.6E-06 5.7E-11 45.3 5.1 40 107-146 1-43 (72)
202 cd05712 Ig_Siglec_N Immunoglob 98.3 7.3E-06 1.6E-10 48.1 7.2 66 6-73 7-102 (119)
203 cd05746 Ig4_Peroxidasin Fourth 98.3 1.9E-06 4E-11 45.5 4.2 40 107-146 1-43 (69)
204 cd05748 Ig_Titin_like Immunogl 98.3 4.4E-06 9.6E-11 44.6 5.6 32 106-137 1-32 (74)
205 cd05744 Ig_Myotilin_C_like Imm 98.3 3.7E-06 8E-11 45.2 5.3 26 107-132 1-26 (75)
206 cd05873 Ig_Sema4D_like Immunog 98.3 8.3E-06 1.8E-10 45.0 6.7 37 96-133 3-39 (87)
207 cd05760 Ig2_PTK7 Second immuno 98.3 4.4E-06 9.5E-11 45.1 5.4 28 107-134 1-28 (77)
208 cd05855 Ig_TrkB_d5 Fifth domai 98.2 3.8E-06 8.3E-11 45.5 5.0 28 108-135 2-29 (79)
209 cd04967 Ig1_Contactin First Ig 98.2 8.5E-06 1.9E-10 45.4 6.6 42 89-131 2-46 (91)
210 cd05738 Ig2_RPTP_IIa_LAR_like 98.2 4.2E-06 9.1E-11 44.8 4.8 25 107-131 1-25 (74)
211 cd04971 Ig_TrKABC_d5 Fifth dom 98.2 5.4E-06 1.2E-10 45.2 5.1 28 108-135 2-29 (81)
212 cd05856 Ig2_FGFRL1-like Second 98.2 4E-06 8.8E-11 45.5 4.7 48 99-146 4-55 (82)
213 cd04978 Ig4_L1-NrCAM_like Four 98.2 3.2E-06 7E-11 45.3 4.2 31 104-134 1-31 (76)
214 cd05720 Ig_CD8_alpha Immunoglo 98.2 5.3E-06 1.1E-10 47.5 4.6 55 9-71 2-89 (104)
215 cd05875 Ig6_hNeurofascin_like 98.1 9.5E-06 2.1E-10 43.8 5.3 25 107-131 1-25 (77)
216 cd07705 Ig2_Necl-1 Second immu 98.1 2.7E-05 5.9E-10 42.6 6.8 54 16-76 2-71 (83)
217 cd00098 IgC Immunoglobulin Con 98.1 4.7E-06 1E-10 46.7 3.9 58 11-75 11-86 (95)
218 cd05874 Ig6_NrCAM Sixth immuno 98.1 4.9E-06 1.1E-10 44.9 3.3 25 107-131 1-25 (77)
219 cd04977 Ig1_NCAM-1_like First 98.1 4.4E-05 9.4E-10 42.7 7.2 50 96-146 7-64 (92)
220 cd05733 Ig6_L1-CAM_like Sixth 98.0 7.5E-06 1.6E-10 44.2 3.7 26 107-132 1-26 (77)
221 cd05735 Ig8_DSCAM Eight immuno 98.0 3E-05 6.4E-10 43.0 6.0 30 104-133 1-30 (88)
222 cd05761 Ig2_Necl-1-4_like Seco 98.0 4.4E-05 9.5E-10 41.7 6.4 54 16-76 2-70 (82)
223 cd05876 Ig3_L1-CAM Third immun 98.0 1.4E-05 3.1E-10 42.3 4.3 26 107-132 1-26 (71)
224 cd05750 Ig_Pro_neuregulin Immu 98.0 1.3E-05 2.8E-10 42.8 4.2 29 107-135 1-30 (75)
225 cd04981 IgV_H Immunoglobulin ( 98.0 1.8E-05 3.9E-10 46.3 4.9 59 7-72 6-97 (117)
226 cd05764 Ig_2 Subgroup of the i 98.0 5.4E-05 1.2E-09 40.3 6.4 32 104-135 1-33 (74)
227 cd05884 Ig2_Necl-3 Second immu 98.0 3.7E-05 8.1E-10 42.1 5.6 53 16-75 2-70 (83)
228 PF13895 Ig_2: Immunoglobulin 98.0 5.2E-05 1.1E-09 40.7 6.2 43 89-134 2-44 (80)
229 cd05754 Ig3_Perlecan_like Thir 98.0 2.8E-05 6E-10 42.7 5.2 51 96-146 8-59 (85)
230 cd05729 Ig2_FGFR_like Second i 98.0 8.7E-05 1.9E-09 40.4 6.9 35 99-133 4-38 (85)
231 PHA02982 hypothetical protein; 98.0 0.00025 5.5E-09 44.9 9.5 109 7-129 33-173 (251)
232 cd05755 Ig2_ICAM-1_like Second 97.9 4.1E-05 8.8E-10 43.4 5.2 62 9-76 12-87 (100)
233 cd07701 Ig1_Necl-3 First (N-te 97.9 6.3E-05 1.4E-09 42.3 6.0 30 96-125 4-33 (95)
234 cd05726 Ig4_Robo Fhird immunog 97.9 3.6E-05 7.8E-10 42.7 5.0 26 104-129 1-26 (90)
235 cd05882 Ig1_Necl-1 First (N-te 97.9 0.00015 3.2E-09 40.8 7.3 33 97-129 5-37 (95)
236 cd05731 Ig3_L1-CAM_like Third 97.9 3.4E-05 7.3E-10 40.7 4.5 26 107-132 1-26 (71)
237 cd05756 Ig1_IL1R_like First im 97.9 2.4E-05 5.3E-10 43.9 3.9 34 98-131 8-46 (94)
238 cd00096 Ig Immunoglobulin doma 97.9 0.0001 2.2E-09 37.9 6.0 51 16-74 1-66 (74)
239 cd05725 Ig3_Robo Third immunog 97.9 4E-05 8.6E-10 40.3 4.3 26 107-132 1-26 (69)
240 cd05858 Ig3_FGFR-2 Third immun 97.9 8.6E-05 1.9E-09 41.2 5.9 23 104-126 1-23 (90)
241 cd05763 Ig_1 Subgroup of the i 97.8 1.8E-05 4E-10 42.3 2.7 23 107-129 1-23 (75)
242 cd05854 Ig6_Contactin-2 Sixth 97.8 0.00013 2.8E-09 40.1 6.0 28 105-132 1-30 (85)
243 smart00406 IGv Immunoglobulin 97.8 4E-05 8.7E-10 41.3 3.9 19 51-69 62-80 (81)
244 cd05736 Ig2_Follistatin_like S 97.8 6.2E-05 1.3E-09 40.3 4.3 28 107-134 1-28 (76)
245 cd05853 Ig6_Contactin-4 Sixth 97.8 0.00014 3E-09 40.0 5.6 27 105-131 1-29 (85)
246 KOG3515|consensus 97.8 7.8E-05 1.7E-09 55.7 5.8 117 10-132 109-250 (741)
247 cd04974 Ig3_FGFR Third immunog 97.8 4.6E-05 9.9E-10 42.4 3.6 24 104-127 1-24 (90)
248 PF00047 ig: Immunoglobulin do 97.8 5.2E-05 1.1E-09 39.1 3.6 34 104-137 1-35 (64)
249 PHA02633 hypothetical protein; 97.7 0.00018 3.8E-09 36.5 5.1 41 49-89 16-56 (63)
250 cd05845 Ig2_L1-CAM_like Second 97.7 0.00023 5E-09 39.9 6.1 51 96-146 10-65 (95)
251 PHA03273 envelope glycoprotein 97.7 0.00078 1.7E-08 47.6 9.8 79 51-132 198-281 (486)
252 cd04979 Ig_Semaphorin_C Immuno 97.7 9E-05 1.9E-09 41.0 4.4 37 96-133 3-39 (89)
253 smart00408 IGc2 Immunoglobulin 97.7 0.00018 3.9E-09 36.3 5.2 29 103-131 1-29 (63)
254 cd04970 Ig6_Contactin_like Six 97.7 0.0002 4.3E-09 39.3 5.4 28 105-132 1-30 (85)
255 cd05757 Ig2_IL1R_like Second i 97.7 0.00011 2.4E-09 41.1 4.2 49 98-146 4-59 (92)
256 cd05765 Ig_3 Subgroup of the i 97.6 7.3E-05 1.6E-09 40.5 3.2 24 104-127 1-24 (81)
257 PHA03269 envelope glycoprotein 97.6 0.0009 1.9E-08 47.6 9.0 81 49-132 287-373 (566)
258 PHA03270 envelope glycoprotein 97.6 0.0017 3.7E-08 45.5 10.0 79 51-132 182-265 (466)
259 cd05753 Ig2_FcgammaR_like Seco 97.6 0.00035 7.6E-09 38.2 5.6 37 96-132 6-43 (83)
260 cd05885 Ig2_Necl-4 Second immu 97.6 0.00013 2.8E-09 39.6 3.6 26 107-132 2-28 (80)
261 PF11465 Receptor_2B4: Natural 97.6 0.0015 3.2E-08 37.1 7.6 41 45-85 65-106 (108)
262 smart00407 IGc1 Immunoglobulin 97.5 0.0005 1.1E-08 36.8 5.3 23 16-44 2-24 (75)
263 cd05895 Ig_Pro_neuregulin-1 Im 97.5 0.00022 4.7E-09 38.2 3.9 26 107-132 1-27 (76)
264 cd05727 Ig2_Contactin-2-like S 97.5 0.00073 1.6E-08 38.0 5.9 35 96-130 10-45 (96)
265 PHA03271 envelope glycoprotein 97.5 0.0039 8.5E-08 43.7 10.3 86 47-135 203-294 (490)
266 cd05759 Ig2_KIRREL3-like Secon 97.4 0.00038 8.1E-09 37.9 4.2 26 107-132 2-28 (82)
267 cd05861 Ig1_PDGFR-alphabeta Fr 97.4 0.0013 2.8E-08 36.0 6.2 25 104-128 1-25 (84)
268 cd07698 IgC_MHC_I_alpha3 Class 97.4 0.0007 1.5E-08 37.8 5.2 57 13-75 14-84 (93)
269 cd05898 Ig5_KIRREL3 Fifth immu 97.4 0.0015 3.3E-08 36.9 6.5 44 88-133 2-46 (98)
270 cd05872 Ig_Sema4B_like Immunog 97.4 0.00076 1.6E-08 37.1 5.1 40 97-137 4-43 (85)
271 cd05897 Ig2_IL1R2_like Second 97.4 0.00055 1.2E-08 38.4 4.6 49 98-146 4-62 (95)
272 cd05766 IgC_MHC_II_beta Class 97.4 0.0035 7.6E-08 35.1 7.9 29 10-44 11-39 (94)
273 cd05742 Ig1_VEGFR_like First i 97.3 0.00061 1.3E-08 37.2 4.5 27 104-130 1-29 (84)
274 cd05883 Ig2_Necl-2 Second immu 97.3 0.00053 1.1E-08 37.4 4.1 27 107-133 2-29 (82)
275 cd07691 Ig_CD3_gamma_delta Imm 97.3 0.0011 2.3E-08 34.6 4.8 49 12-72 5-54 (69)
276 cd05772 IgC_SIRP Signal-regula 97.3 0.0024 5.1E-08 37.0 6.8 30 9-44 17-46 (111)
277 cd05721 IgV_CTLA-4 Immunoglobu 97.3 0.0012 2.5E-08 38.3 5.4 59 7-70 7-93 (115)
278 cd05755 Ig2_ICAM-1_like Second 97.3 0.003 6.4E-08 35.8 6.9 37 96-132 8-47 (100)
279 PF08205 C2-set_2: CD80-like C 97.3 0.00039 8.5E-09 38.4 3.2 57 13-76 14-86 (89)
280 cd07692 Ig_CD3_epsilon Immunog 97.2 0.0014 3.1E-08 33.8 4.7 52 9-72 3-55 (65)
281 cd05734 Ig7_DSCAM Seventh immu 97.2 0.00034 7.4E-09 37.7 2.6 21 107-127 1-21 (79)
282 cd05847 IgC_CH2_IgE CH2 domain 97.2 0.0013 2.8E-08 36.9 4.9 27 12-44 13-39 (94)
283 cd05770 IgC_beta2m Class I maj 97.2 0.0071 1.5E-07 33.8 7.9 58 11-74 13-83 (93)
284 cd05772 IgC_SIRP Signal-regula 97.2 0.00078 1.7E-08 39.0 4.1 46 87-132 4-51 (111)
285 cd07696 IgC_CH3 CH3 domain (th 97.2 0.00092 2E-08 37.6 4.3 31 8-44 9-40 (96)
286 cd07690 Ig1_CD4 First immunogl 97.2 0.0015 3.2E-08 36.7 5.0 31 99-129 2-32 (94)
287 cd05717 Ig1_Necl-1-3_like Firs 97.2 0.0029 6.4E-08 35.3 6.3 30 96-125 4-33 (95)
288 cd05771 IgC_Tapasin_R Tapasin- 97.1 0.002 4.3E-08 38.8 5.6 26 12-44 52-78 (139)
289 cd07699 IgC_L Immunoglobulin C 97.1 0.001 2.3E-08 37.7 4.0 27 12-44 16-42 (100)
290 cd05761 Ig2_Necl-1-4_like Seco 97.1 0.0011 2.5E-08 36.1 4.0 26 107-132 2-28 (82)
291 cd07703 Ig2_Nectin-2_like Seco 97.0 0.0045 9.8E-08 34.8 6.0 57 15-78 17-86 (95)
292 cd05884 Ig2_Necl-3 Second immu 97.0 0.0021 4.6E-08 35.1 4.5 26 107-132 2-28 (83)
293 cd07705 Ig2_Necl-1 Second immu 97.0 0.0017 3.6E-08 35.5 4.0 26 107-132 2-28 (83)
294 cd00098 IgC Immunoglobulin Con 97.0 0.002 4.4E-08 35.9 4.3 33 102-134 11-45 (95)
295 cd05871 Ig_Semaphorin_classIII 97.0 0.0059 1.3E-07 34.0 6.1 27 98-125 5-31 (91)
296 PHA02914 Immunoglobulin-like d 97.0 0.02 4.4E-07 40.1 9.6 114 6-131 272-422 (500)
297 smart00410 IG_like Immunoglobu 96.9 0.0088 1.9E-07 31.8 6.6 34 98-131 3-37 (86)
298 smart00409 IG Immunoglobulin. 96.9 0.0088 1.9E-07 31.8 6.6 34 98-131 3-37 (86)
299 cd05767 IgC_MHC_II_alpha Class 96.9 0.0039 8.5E-08 35.0 4.9 28 11-44 13-40 (94)
300 PF07654 C1-set: Immunoglobuli 96.9 0.0053 1.1E-07 33.4 5.3 27 12-44 7-33 (83)
301 cd05860 Ig4_SCFR Fourth immuno 96.9 0.0042 9.1E-08 35.2 4.8 38 97-134 11-49 (101)
302 cd05719 Ig2_PVR_like Second im 96.8 0.01 2.2E-07 33.3 6.1 55 15-76 17-84 (95)
303 PF08205 C2-set_2: CD80-like C 96.7 0.003 6.4E-08 34.8 3.6 27 104-130 14-41 (89)
304 cd05899 IgV_TCR_beta Immunoglo 96.7 0.0051 1.1E-07 35.4 4.6 30 96-126 5-34 (110)
305 cd05768 IgC_CH4 CH4 domain (fo 96.6 0.0044 9.5E-08 35.3 3.9 28 11-44 14-41 (102)
306 cd05881 Ig1_Necl-2 First (N-te 96.6 0.02 4.3E-07 32.2 6.4 33 97-129 5-37 (95)
307 cd05751 Ig1_LILRB1_like First 96.6 0.013 2.7E-07 32.6 5.5 40 89-131 3-42 (91)
308 cd07698 IgC_MHC_I_alpha3 Class 96.6 0.0099 2.1E-07 33.2 5.0 26 104-129 14-41 (93)
309 cd07699 IgC_L Immunoglobulin C 96.5 0.0044 9.6E-08 35.1 3.5 31 101-131 14-46 (100)
310 cd04983 IgV_TCR_alpha_like Imm 96.5 0.0074 1.6E-07 34.5 4.5 31 96-126 5-35 (109)
311 smart00407 IGc1 Immunoglobulin 96.5 0.0081 1.8E-07 32.0 4.2 24 107-130 2-27 (75)
312 cd04980 IgV_L_kappa Immunoglob 96.4 0.012 2.6E-07 33.6 4.9 31 96-126 7-38 (106)
313 cd05769 IgC_TCR_beta T cell re 96.4 0.016 3.4E-07 33.8 5.3 26 13-44 18-43 (115)
314 cd05769 IgC_TCR_beta T cell re 96.4 0.0067 1.5E-07 35.3 3.7 32 101-132 15-48 (115)
315 cd05768 IgC_CH4 CH4 domain (fo 96.4 0.0055 1.2E-07 34.9 3.3 31 101-131 13-45 (102)
316 cd07697 IgC_TCR_gamma T cell r 96.3 0.012 2.7E-07 33.1 4.4 27 12-44 15-41 (96)
317 cd04985 IgC_CH1 CH1 domain (fi 96.2 0.016 3.4E-07 32.6 4.5 28 12-45 15-42 (95)
318 PF08204 V-set_CD47: CD47 immu 96.2 0.021 4.5E-07 33.9 5.0 76 6-85 20-119 (130)
319 cd05766 IgC_MHC_II_beta Class 96.1 0.019 4.1E-07 32.2 4.4 31 102-132 12-44 (94)
320 cd04982 IgV_TCR_gamma Immunogl 96.1 0.018 4E-07 33.3 4.6 31 96-126 5-37 (116)
321 cd07697 IgC_TCR_gamma T cell r 96.0 0.01 2.2E-07 33.4 3.2 29 103-131 15-45 (96)
322 cd05767 IgC_MHC_II_alpha Class 96.0 0.041 8.9E-07 30.8 5.6 29 104-132 15-45 (94)
323 PF13927 Ig_3: Immunoglobulin 96.0 0.017 3.8E-07 30.1 3.8 34 89-124 2-36 (75)
324 cd04985 IgC_CH1 CH1 domain (fi 95.8 0.044 9.5E-07 30.8 5.0 27 103-129 15-43 (95)
325 cd05896 Ig1_IL1RAPL-1_like Fir 95.7 0.037 8E-07 31.6 4.6 35 98-132 9-54 (104)
326 cd05711 Ig_FcalphaRI Immunoglo 95.7 0.032 6.9E-07 31.2 4.3 32 98-130 9-40 (94)
327 cd05770 IgC_beta2m Class I maj 95.7 0.041 8.8E-07 30.8 4.6 29 103-131 14-44 (93)
328 cd04986 IgC_CH2 CH2 domain (se 95.6 0.03 6.6E-07 31.7 3.9 28 12-44 18-45 (99)
329 cd07704 Ig2_Nectin-3-4_like Se 95.6 0.085 1.8E-06 29.8 5.6 61 8-75 11-85 (97)
330 cd05847 IgC_CH2_IgE CH2 domain 95.6 0.032 6.9E-07 31.3 3.9 28 103-130 13-42 (94)
331 KOG1480|consensus 95.5 0.0081 1.7E-07 45.4 1.8 62 8-76 139-208 (909)
332 PF07654 C1-set: Immunoglobuli 95.5 0.063 1.4E-06 29.1 4.9 29 104-132 8-38 (83)
333 cd07696 IgC_CH3 CH3 domain (th 95.5 0.079 1.7E-06 29.8 5.3 31 99-129 9-42 (96)
334 PHA03042 CD47-like protein; Pr 95.4 0.2 4.3E-06 33.5 7.7 72 8-83 26-102 (286)
335 cd07689 Ig2_VCAM-1 Second immu 95.4 0.091 2E-06 29.7 5.3 58 9-72 11-84 (99)
336 PF07354 Sp38: Zona-pellucida- 95.2 0.069 1.5E-06 35.5 5.0 38 37-74 14-60 (271)
337 cd07706 IgV_TCR_delta Immunogl 95.0 0.076 1.6E-06 30.8 4.6 30 96-125 6-36 (116)
338 cd00099 IgV Immunoglobulin var 95.0 0.055 1.2E-06 30.5 3.8 27 100-126 2-29 (105)
339 PF05790 C2-set: Immunoglobuli 94.8 0.31 6.8E-06 26.4 7.7 35 37-71 28-63 (80)
340 cd04981 IgV_H Immunoglobulin ( 94.8 0.095 2.1E-06 30.6 4.5 30 96-125 4-35 (117)
341 cd04984 IgV_L_lambda Immunoglo 94.7 0.047 1E-06 30.6 3.0 26 100-125 2-29 (98)
342 KOG4597|consensus 94.3 0.063 1.4E-06 38.6 3.5 69 10-86 208-292 (560)
343 cd05862 Ig1_VEGFR First immuno 94.0 0.3 6.5E-06 26.7 5.3 26 104-129 1-28 (86)
344 cd05720 Ig_CD8_alpha Immunoglo 93.9 0.086 1.9E-06 30.0 3.0 27 100-126 2-28 (104)
345 cd00096 Ig Immunoglobulin doma 93.9 0.28 6E-06 24.4 4.9 26 107-132 1-26 (74)
346 cd07700 IgV_CD8_beta Immunoglo 93.5 0.2 4.4E-06 28.6 4.1 27 100-126 2-29 (107)
347 PF07686 V-set: Immunoglobulin 93.2 0.36 7.8E-06 27.3 4.9 30 96-125 8-38 (114)
348 cd07692 Ig_CD3_epsilon Immunog 93.1 0.16 3.5E-06 26.3 2.9 28 102-132 5-32 (65)
349 cd04986 IgC_CH2 CH2 domain (se 92.8 0.18 4E-06 28.5 3.1 31 99-129 14-47 (99)
350 cd05715 Ig_P0-like Immunoglobu 92.7 0.39 8.5E-06 27.8 4.5 30 96-125 5-38 (116)
351 PHA03052 Hypothetical protein; 92.4 0.88 1.9E-05 23.7 4.9 37 96-132 4-43 (69)
352 cd05716 Ig_pIgR Immunoglobulin 92.0 0.34 7.3E-06 27.0 3.6 29 99-127 2-31 (98)
353 PHA02987 Ig domain OX-2-like p 92.0 0.44 9.6E-06 30.2 4.3 31 98-128 24-55 (189)
354 cd05741 Ig_CEACAM_D1_like Firs 91.9 0.18 3.9E-06 27.7 2.4 25 104-128 1-25 (92)
355 cd05774 Ig_CEACAM_D1 First imm 91.8 0.22 4.7E-06 28.5 2.6 31 96-126 5-35 (105)
356 cd05880 Ig_EVA1 Immunoglobulin 91.7 0.64 1.4E-05 27.0 4.6 30 96-125 5-38 (115)
357 cd05712 Ig_Siglec_N Immunoglob 91.7 0.61 1.3E-05 27.2 4.6 31 96-126 6-42 (119)
358 cd05719 Ig2_PVR_like Second im 91.2 0.36 7.8E-06 27.1 3.1 22 105-126 16-38 (95)
359 cd07704 Ig2_Nectin-3-4_like Se 91.1 0.5 1.1E-05 26.7 3.6 28 99-126 11-40 (97)
360 cd07694 Ig2_CD4 Second immunog 90.7 0.89 1.9E-05 25.1 4.2 28 98-125 8-37 (88)
361 cd05877 Ig_LP_like Immunoglobu 89.8 0.71 1.5E-05 26.1 3.7 25 103-127 1-31 (106)
362 cd07703 Ig2_Nectin-2_like Seco 89.8 0.59 1.3E-05 26.3 3.2 22 105-126 16-38 (95)
363 cd05714 Ig_CSPGs_LP Immunoglob 89.1 0.87 1.9E-05 25.8 3.7 24 103-126 1-30 (106)
364 KOG0613|consensus 89.1 0.45 9.8E-06 38.4 3.1 116 7-131 343-481 (1205)
365 cd05775 Ig_SLAM-CD84_like_N N- 89.0 0.43 9.3E-06 26.7 2.3 26 103-128 3-29 (97)
366 cd05900 Ig_Aggrecan Immunoglob 88.5 0.95 2.1E-05 26.2 3.5 24 103-126 1-36 (112)
367 PF06832 BiPBP_C: Penicillin-B 88.4 2.8 6.1E-05 23.0 6.4 28 106-134 31-58 (89)
368 PHA02865 MHC-like TNF binding 87.3 2.9 6.3E-05 29.3 5.7 23 15-43 216-238 (338)
369 cd07689 Ig2_VCAM-1 Second immu 87.2 1.2 2.7E-05 25.2 3.3 32 100-131 11-45 (99)
370 cd05878 Ig_Aggrecan_like Immun 85.1 1.9 4.2E-05 24.7 3.6 23 104-126 2-34 (110)
371 cd05713 Ig_MOG_like Immunoglob 84.5 1.9 4.2E-05 24.0 3.4 24 104-127 1-27 (100)
372 cd05721 IgV_CTLA-4 Immunoglobu 82.2 4.8 0.0001 23.6 4.3 29 97-125 6-37 (115)
373 PHA03240 envelope glycoprotein 81.1 3.9 8.5E-05 26.6 4.0 20 49-68 103-122 (258)
374 PHA03270 envelope glycoprotein 80.1 21 0.00045 26.1 10.5 33 7-44 228-260 (466)
375 cd05879 Ig_P0 Immunoglobulin ( 79.6 7.5 0.00016 22.7 4.6 28 96-123 5-36 (116)
376 PF06328 Lep_receptor_Ig: Ig-l 78.0 9.6 0.00021 21.1 4.8 36 96-131 10-50 (89)
377 PHA03273 envelope glycoprotein 75.9 29 0.00064 25.6 8.5 33 7-44 244-276 (486)
378 PHA03271 envelope glycoprotein 71.4 37 0.00081 24.8 9.6 33 7-44 254-286 (490)
379 PF01688 Herpes_gI: Alphaherpe 64.2 29 0.00064 21.7 4.8 24 51-74 124-147 (161)
380 TIGR00864 PCC polycystin catio 61.9 1.4E+02 0.003 28.0 11.4 73 58-130 1834-1909(2740)
381 PHA03282 envelope glycoprotein 61.2 34 0.00074 25.4 5.3 32 38-71 113-144 (540)
382 KOG0613|consensus 60.4 37 0.00079 28.5 5.8 113 12-132 243-378 (1205)
383 PHA02914 Immunoglobulin-like d 60.2 65 0.0014 23.6 12.2 40 52-92 82-121 (500)
384 PHA02935 Hypothetical protein; 60.0 31 0.00067 22.4 4.5 60 52-113 103-164 (349)
385 PHA03290 envelope glycoprotein 55.6 45 0.00097 23.6 4.9 25 50-74 128-152 (357)
386 PHA03269 envelope glycoprotein 49.7 1.1E+02 0.0024 23.1 10.3 33 7-44 336-368 (566)
387 PHA03264 envelope glycoprotein 49.1 89 0.0019 22.6 5.6 23 50-72 157-179 (416)
388 PF11049 KSHV_K1: Glycoprotein 47.7 41 0.0009 17.6 5.4 48 38-92 13-62 (71)
389 cd05890 Ig2_Nectin-1_like Seco 46.5 55 0.0012 18.6 4.7 20 17-43 24-43 (98)
390 PHA03265 envelope glycoprotein 44.9 1.2E+02 0.0025 21.9 5.7 25 49-73 168-192 (402)
391 PHA03282 envelope glycoprotein 43.0 35 0.00075 25.4 3.0 23 50-72 332-354 (540)
392 PF02124 Marek_A: Marek's dise 40.6 1.1E+02 0.0023 20.3 10.3 21 110-130 95-117 (211)
393 PHA03283 envelope glycoprotein 40.2 1.2E+02 0.0026 23.1 5.4 38 49-86 132-169 (542)
394 PHA03289 envelope glycoprotein 39.1 1.1E+02 0.0024 21.6 4.8 24 51-74 122-145 (352)
395 KOG3611|consensus 39.0 64 0.0014 25.7 4.1 23 51-73 612-634 (737)
396 PHA03286 envelope glycoprotein 38.6 51 0.0011 24.4 3.3 21 52-72 308-328 (492)
397 KOG1026|consensus 38.0 66 0.0014 25.7 4.0 69 8-86 202-273 (774)
398 PHA03292 envelope glycoprotein 36.6 1.2E+02 0.0025 22.1 4.7 25 50-74 127-151 (413)
399 PF02480 Herpes_gE: Alphaherpe 35.4 1.5E+02 0.0032 22.1 5.3 26 47-72 265-290 (439)
400 COG4953 PbpC Membrane carboxyp 35.1 2.3E+02 0.005 22.6 6.3 52 16-76 672-723 (733)
401 PF02440 Adeno_E3_CR1: Adenovi 33.2 76 0.0017 16.4 4.3 7 37-43 17-23 (63)
402 PHA03291 envelope glycoprotein 31.8 1.8E+02 0.0038 21.0 4.9 38 49-86 127-164 (401)
403 KOG4597|consensus 29.2 28 0.0006 25.9 0.9 30 96-125 203-232 (560)
404 PHA03112 IL-18 binding protein 28.9 1.1E+02 0.0023 18.8 3.2 26 102-127 36-63 (141)
405 PHA03286 envelope glycoprotein 28.0 2.6E+02 0.0057 21.0 9.3 37 50-86 126-163 (492)
406 PF01537 Herpes_glycop_D: Herp 27.8 1.4E+02 0.0031 17.8 5.3 24 49-72 90-113 (124)
407 PF10430 Ig_Tie2_1: Tie-2 Ig-l 27.6 87 0.0019 17.5 2.4 10 62-71 74-83 (96)
408 PHA03283 envelope glycoprotein 24.5 1.3E+02 0.0028 23.0 3.4 24 49-72 313-336 (542)
409 PF04668 Tsg: Twisted gastrula 22.4 63 0.0014 19.5 1.4 8 37-44 101-108 (132)
410 cd09030 DUF1425 Putative perip 21.8 1.1E+02 0.0024 17.2 2.3 14 120-133 53-67 (101)
411 PF11781 RRN7: RNA polymerase 20.5 51 0.0011 14.8 0.6 9 60-68 20-28 (36)
412 PF07233 DUF1425: Protein of u 20.2 1.5E+02 0.0032 16.5 2.6 14 120-133 45-59 (94)
No 1
>KOG3513|consensus
Probab=99.86 E-value=8.2e-21 Score=140.42 Aligned_cols=120 Identities=20% Similarity=0.372 Sum_probs=111.1
Q ss_pred eeeEeeeccceeeeeecccCCCCcCCCCccEEEEeeCC--------EEecCCceEEEecCCCCCCEEEEEEEEeCCCCcE
Q psy6361 7 VEQAMLLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDL--------LYVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTS 78 (148)
Q Consensus 7 ~~~~~~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~--------~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~ 78 (148)
.+.+..|+.+.|+|.+.|.|.| ++.|.|.+ ........|.|.++..+|+|.|.|.+.|..|...
T Consensus 250 ~~~a~~G~~v~LECfA~G~P~P--------~i~W~k~~g~~~~~r~~~~~~~~vL~I~nv~~~D~G~Y~C~AeN~~G~~~ 321 (1051)
T KOG3513|consen 250 TETALKGQSVKLECFALGNPTP--------QIKWRKVDGKPPPRRATYSNYGKVLKIPNVQYEDAGEYECIAENSRGSAT 321 (1051)
T ss_pred cccccCCCeEEEEEEecCCCCC--------cEEEEeCCCCCCCcceeeeccccEEEecccCcCCCeEEEEEEecccccce
Confidence 5778999999999999999999 59999976 4556678999999999999999999999999999
Q ss_pred EEEEEEEecCCEEEeCCCceEEEecCCcEEEEeeeecccCCeEEEEECCEEeecCCc
Q psy6361 79 KTIQMNVLVPPFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSH 135 (148)
Q Consensus 79 ~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~g~~l~~~~~ 135 (148)
....+.|..+|.++.. +++..+..|+++.+.|.+.|.|.|.+.|++||.++....+
T Consensus 322 ~~~~v~v~a~P~w~~~-~~d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r 377 (1051)
T KOG3513|consen 322 HSGHVTVYAPPYWLQK-PQDTEADTGSNVTLECKASGKPNPTVKWLKNGEPLEPAER 377 (1051)
T ss_pred eeEEEEEecCchhhcc-cceeEecCCCCeEEEEEecCCCCCceEEeeCCeecCccCC
Confidence 9999999999999998 9999999999999999999999999999999999986665
No 2
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.81 E-value=3.5e-18 Score=110.22 Aligned_cols=135 Identities=14% Similarity=0.151 Sum_probs=97.1
Q ss_pred ceeeeEeeeccceeeeeecccCCCC---cCCCCccEEEEeeCCEE--------------------ecCCceEEEecCCCC
Q psy6361 5 MNVEQAMLLDLIPMHSRYNYTNLPQ---SRNPGQVIKRYLKDLLY--------------------VTRNGSFVINNIAEK 61 (148)
Q Consensus 5 ~~~~~~~~g~~~~l~C~~~~~~~p~---~~~~~~~~v~W~~~~~~--------------------~~~~~~l~i~~~~~~ 61 (148)
.....+..|+.+.|.|.+.+.+.|. ....+.+.+.|+|++.. ......|.|.+++.+
T Consensus 29 ~~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~ 108 (227)
T PHA02826 29 LTPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINI 108 (227)
T ss_pred cceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChH
Confidence 4567899999999999987754331 00012337999998711 012458999999999
Q ss_pred CCEEEEEEEEeCCCCcEEEEEEEEecCCEEEeCCCceEEEecCCcEEEEeeee-----cccCCeEEEEECCEEeecCCce
Q psy6361 62 DTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKDEQQESVAIVVNHPMNISCSHY-----GVPTPDFSWYKDGSLLRIQSHY 136 (148)
Q Consensus 62 d~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~-----g~p~~~~~W~~~g~~l~~~~~~ 136 (148)
|+|.|.|.+.|..+.....+.|.|... +....+.+|+.+.|.|.+. +.|.|.++|||||+++..+.++
T Consensus 109 DsG~Y~C~a~N~~~~~~~~i~L~V~~~-------~~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~r~ 181 (227)
T PHA02826 109 DEGIYICTISSGNICEESTIRLTFDSG-------TINYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTDRI 181 (227)
T ss_pred HCEEEEEEEEECCcceEEEEEEEEecC-------CccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCCCCE
Confidence 999999999998877666667766321 2234667899999999974 3467899999999998766554
Q ss_pred EE----EEEEEEee
Q psy6361 137 IT----FFLFFQRL 146 (148)
Q Consensus 137 ~~----~~l~~~~~ 146 (148)
.. ..|.|.++
T Consensus 182 ~~~~~~~~L~I~~V 195 (227)
T PHA02826 182 QLRNNNSTLVIKSA 195 (227)
T ss_pred EEeCCCCEEEECcC
Confidence 31 25666654
No 3
>KOG3513|consensus
Probab=99.79 E-value=3e-18 Score=127.14 Aligned_cols=133 Identities=24% Similarity=0.416 Sum_probs=112.4
Q ss_pred ceeeeEeeeccceeeeeecccCCCCcCCCCccEEEEeeCC----------EEecCCceEEEecCCCCCCEEEEEEEEeCC
Q psy6361 5 MNVEQAMLLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDL----------LYVTRNGSFVINNIAEKDTNVYTCTVSNAA 74 (148)
Q Consensus 5 ~~~~~~~~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~----------~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 74 (148)
..+..+..|+++.|.|.+.+.|.| +++|++++ +..-..+.|+|.++..+|+|.|.|.|+|..
T Consensus 338 ~~d~~~~~gs~v~~eC~a~g~P~p--------~v~WlkNg~pl~~~~r~~~~~i~~g~L~is~v~~~dsg~YQC~A~Nk~ 409 (1051)
T KOG3513|consen 338 PQDTEADTGSNVTLECKASGKPNP--------TVKWLKNGEPLEPAERDPRYKIDDGTLIISNVQESDSGVYQCIAENKY 409 (1051)
T ss_pred cceeEecCCCCeEEEEEecCCCCC--------ceEEeeCCeecCccCCCcceEEeCCEEEEEecccccCeEEEeeeeccc
Confidence 457888999999999999999999 59999998 244556799999999999999999999999
Q ss_pred CCcEEEEEEEEe-cCCEEEeCCCce--EEEecCCcEEEEeeeecccCCeEEEEECCEEeecCCceEEE---EEEEEee
Q psy6361 75 GSTSKTIQMNVL-VPPFFKDEQQES--VAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHYITF---FLFFQRL 146 (148)
Q Consensus 75 ~~~~~~~~l~v~-~~p~~~~~~~~~--~~~~~g~~~~l~C~~~g~p~~~~~W~~~g~~l~~~~~~~~~---~l~~~~~ 146 (148)
|.....+.|.|. .+|.+... +.. ..+..|..+.+.|...++|.|.+.|.|++..+..+.++... +|.|..+
T Consensus 410 G~i~anA~L~V~a~~P~f~~~-p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~k~~~~~~~~~r~~i~edGtL~I~n~ 486 (1051)
T KOG3513|consen 410 GTIYANAELKVLASAPVFPLN-PVERKVMAVVGGTVTIDCKPFASPKPKVSWLKGGEKLLQSGRIRILEDGTLEISNV 486 (1051)
T ss_pred ceEeeeeEEEEEccCCCCCCC-ccceEEEEEeCCeEEEeeccCCCCcceEEEEcCCcccccCceEEECCCCcEEeccc
Confidence 998899999998 55887766 443 46778999999999999999999999999877777777654 5666543
No 4
>KOG4194|consensus
Probab=99.79 E-value=1.7e-18 Score=121.94 Aligned_cols=121 Identities=24% Similarity=0.389 Sum_probs=107.2
Q ss_pred ceeeeEeeeccceeeeeecccCCCCcCCCCccEEEEeeCC------------EEecCCceEEEecCCCCCCEEEEEEEEe
Q psy6361 5 MNVEQAMLLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDL------------LYVTRNGSFVINNIAEKDTNVYTCTVSN 72 (148)
Q Consensus 5 ~~~~~~~~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~------------~~~~~~~~l~i~~~~~~d~g~y~C~~~~ 72 (148)
..+.....|+...|.|.+.|.|.| .+.|.|+| +....+..+.|.+++.+|+|.|+|.|.|
T Consensus 619 P~dltl~tg~mArl~CaAtG~P~P--------eIawqkdggtdFPAA~eRRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n 690 (873)
T KOG4194|consen 619 PEDLTLRTGQMARLECAATGHPRP--------EIAWQKDGGTDFPAARERRLHVMPEDDVFFITNVKIEDQGIYTCTAQN 690 (873)
T ss_pred cccceeecccceeeeeeccCCCCc--------ceeehhcCCCCCchhhhheeeecCCCCEEEEecccccccceeEEeeec
Confidence 346777889999999999999999 59999987 3445567889999999999999999999
Q ss_pred CCCCcEEEEEEEEecCCEEEeCCCceEEEecCCcEEEEeeeecccC-CeEEEEECCEEeecCC
Q psy6361 73 AAGSTSKTIQMNVLVPPFFKDEQQESVAIVVNHPMNISCSHYGVPT-PDFSWYKDGSLLRIQS 134 (148)
Q Consensus 73 ~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~p~-~~~~W~~~g~~l~~~~ 134 (148)
.+|..+....|.|...|.+..+ ..+..+..|+++.+.|.+.+.|. |.+.|+|+++++.-..
T Consensus 691 ~AG~isanAtL~V~e~p~f~~P-L~~~~V~~get~vlqC~a~~~~a~pr~~W~k~d~pil~t~ 752 (873)
T KOG4194|consen 691 VAGQISANATLTVLETPSFSIP-LEDQLVVVGETLVLQCLAEGAPADPRLEWFKEDKPILITE 752 (873)
T ss_pred cccceeeceEEEEecCCccccc-ccceEEEecceEEEEEecCCCCCCccccccCCCCceEEee
Confidence 9999999999999999999888 78889999999999999999887 9999999998876433
No 5
>KOG4221|consensus
Probab=99.76 E-value=9.6e-18 Score=124.97 Aligned_cols=120 Identities=21% Similarity=0.403 Sum_probs=103.1
Q ss_pred eeeEeeeccceeeeeecccCCCCcCCCCccEEEEeeCC---------EEecCCceEEEecCCCCCCEEEEEEEEeCCCCc
Q psy6361 7 VEQAMLLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDL---------LYVTRNGSFVINNIAEKDTNVYTCTVSNAAGST 77 (148)
Q Consensus 7 ~~~~~~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~---------~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 77 (148)
...+..|+.+.|.|.+.+.+.| +|.|.+++ ........|.|++++..|+|.|+|.|.|.....
T Consensus 246 ~~~v~~g~~v~leCvvs~~p~p--------~v~Wlrng~~i~~ds~rivl~g~~slliS~a~~~dSg~YtC~Atn~~D~i 317 (1381)
T KOG4221|consen 246 NAVVVEGDDVVLECVVSGVPKP--------SVKWLRNGEKISVDSYRIVLVGGSSLLISNATDDDSGKYTCRATNTNDSI 317 (1381)
T ss_pred ccccccCCcEEEEEEecCCCCC--------ceEEeeCCeeeeecceEEEEecccceEEeccccccCceEEEEecCCCccc
Confidence 3567889999999999999999 59999998 223345789999999999999999999955555
Q ss_pred EEEEEEEEecCCEEEeCCCceEEEecCCcEEEEeeeecccCCeEEEEECCEEeecCCc
Q psy6361 78 SKTIQMNVLVPPFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSH 135 (148)
Q Consensus 78 ~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~g~~l~~~~~ 135 (148)
.....+.|..+|.++.. +......++..+.+.|.+.|.|.|.+.|||||..+.+...
T Consensus 318 dasaev~V~a~P~~~~~-p~~l~A~e~~die~ec~~~g~p~p~v~w~kNgd~~ipsdy 374 (1381)
T KOG4221|consen 318 DASAEVTVLAPPGFTKA-PTTLVAHESMDIEFECPVSGKPIPTVRWYKNGDRIIPSDY 374 (1381)
T ss_pred ccceEEEEEcCCCCCCC-CcceeeeeccceeEeCCCCCCCcceEEEEecCcccCcccc
Confidence 66677888899999988 8889999999999999999999999999999988876443
No 6
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.68 E-value=6.7e-16 Score=87.55 Aligned_cols=78 Identities=14% Similarity=0.124 Sum_probs=66.7
Q ss_pred ceeeeEeeeccceeeeeecccCCCCcCCCCccEEEEeeCCEE-----------ecCCceEEEecCCCCCCEEEEEEEEeC
Q psy6361 5 MNVEQAMLLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDLLY-----------VTRNGSFVINNIAEKDTNVYTCTVSNA 73 (148)
Q Consensus 5 ~~~~~~~~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~~~-----------~~~~~~l~i~~~~~~d~g~y~C~~~~~ 73 (148)
.....+..|+.+.|.|.+.|.+.| .+.|+|++.. ......|.|.++..+|+|.|+|.+.|.
T Consensus 7 p~~~~v~~G~~v~l~C~~~G~p~p--------~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~ 78 (98)
T cd05762 7 PEDMKVRAGESVELFCKVTGTQPI--------TCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENK 78 (98)
T ss_pred CcCEEEECCCEEEEEEEEcccCCC--------ceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcC
Confidence 456788999999999999999988 5999999711 123567999999999999999999999
Q ss_pred CCCcEEEEEEEEecCCE
Q psy6361 74 AGSTSKTIQMNVLVPPF 90 (148)
Q Consensus 74 ~~~~~~~~~l~v~~~p~ 90 (148)
.|.....+.|.|..+|.
T Consensus 79 ~G~~~~~~~l~V~~~P~ 95 (98)
T cd05762 79 LGSRQAQVNLTVVDKPD 95 (98)
T ss_pred CCceeEEEEEEEecCCC
Confidence 99988899999987663
No 7
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.66 E-value=2.2e-15 Score=83.85 Aligned_cols=73 Identities=19% Similarity=0.236 Sum_probs=62.4
Q ss_pred ceeeeEeeeccceeeeeecccCCCCcCCCCccEEEEeeCC-------EEecCCceEEEecCCCCCCEEEEEEEEeCCCCc
Q psy6361 5 MNVEQAMLLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDL-------LYVTRNGSFVINNIAEKDTNVYTCTVSNAAGST 77 (148)
Q Consensus 5 ~~~~~~~~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~-------~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 77 (148)
..+..+..|+.+.|.|.+.|.|.| .++|+|++ .....+..|.|.++..+|+|.|+|.|.|..|..
T Consensus 8 ~~~~~~~~G~~v~l~C~~~G~P~P--------~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~ 79 (88)
T cd05851 8 FKDTYALKGQNVTLECFALGNPVP--------VIRWRKILEPMPATAEISMSGAVLKIFNIQPEDEGTYECEAENIKGKD 79 (88)
T ss_pred cccEEEeCCCcEEEEEEecccCCC--------EEEEEECCcCCCCCCEEecCCCEEEECcCChhhCEEEEEEEEcCCCce
Confidence 456778999999999999999999 69999986 233345689999999999999999999999998
Q ss_pred EEEEEEEE
Q psy6361 78 SKTIQMNV 85 (148)
Q Consensus 78 ~~~~~l~v 85 (148)
...+.|.|
T Consensus 80 ~~~~~l~V 87 (88)
T cd05851 80 KHQARVYV 87 (88)
T ss_pred EEEEEEEE
Confidence 77777765
No 8
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.65 E-value=2.5e-15 Score=85.43 Aligned_cols=76 Identities=16% Similarity=0.116 Sum_probs=62.6
Q ss_pred CcceeeeEeeeccceeeeeecc-cCCCCcCCCCccEEEEeeCCEEe---------cC-------CceEEEecCCCCCCEE
Q psy6361 3 GTMNVEQAMLLDLIPMHSRYNY-TNLPQSRNPGQVIKRYLKDLLYV---------TR-------NGSFVINNIAEKDTNV 65 (148)
Q Consensus 3 ~~~~~~~~~~g~~~~l~C~~~~-~~~p~~~~~~~~~v~W~~~~~~~---------~~-------~~~l~i~~~~~~d~g~ 65 (148)
+......+..|+.+.|.|.+.+ .|.| .+.|+|+|... .. ...|.|..+..+|+|.
T Consensus 8 ~~~~~~~v~~G~~v~L~c~v~g~~P~p--------~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~ 79 (101)
T cd04975 8 EQNTTIFVNLGENLNLVVEVEAYPPPP--------HINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGT 79 (101)
T ss_pred CCCceEEEECCCCEEEEEEEEecCCCC--------ccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCee
Confidence 3445788999999999999999 7777 69999998111 11 2569999999999999
Q ss_pred EEEEEEeCCCCcEEEEEEEEe
Q psy6361 66 YTCTVSNAAGSTSKTIQMNVL 86 (148)
Q Consensus 66 y~C~~~~~~~~~~~~~~l~v~ 86 (148)
|+|.|.|..|..+..+.|.|.
T Consensus 80 Ytc~A~N~~G~~~~t~~L~V~ 100 (101)
T cd04975 80 YTFLASNSDASKSLTFELYVN 100 (101)
T ss_pred EEEEEECCCccEEEEEEEEEE
Confidence 999999999998888887764
No 9
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.64 E-value=2.2e-15 Score=81.27 Aligned_cols=66 Identities=21% Similarity=0.276 Sum_probs=56.0
Q ss_pred eeccceeeeeecccCCCCcCCCCccEEEEeeCCE--------EecCCceEEEecCCCCCCEEEEEEEEeCCCCcEEEEEE
Q psy6361 12 LLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDLL--------YVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQM 83 (148)
Q Consensus 12 ~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~~--------~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l 83 (148)
.|+.+.|.|.+.+.|.| .+.|+|++. .......|.|.++..+|+|.|+|.+.|..|..+..+.|
T Consensus 1 eG~~v~l~C~~~g~P~p--------~i~W~k~g~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L 72 (74)
T cd05745 1 EGQTVDFLCEAQGYPQP--------VIAWTKGGSQLSVDRRHLVLSSGTLRISRVALHDQGQYECQAVNIVGSQRTVAQL 72 (74)
T ss_pred CCCeEEEEeECCEecCC--------EEEEEECCEECCCCCCeEEccCCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEE
Confidence 37889999999999999 699999872 23345689999999999999999999999988777776
Q ss_pred EE
Q psy6361 84 NV 85 (148)
Q Consensus 84 ~v 85 (148)
.|
T Consensus 73 ~V 74 (74)
T cd05745 73 TV 74 (74)
T ss_pred eC
Confidence 54
No 10
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.63 E-value=5.5e-14 Score=95.73 Aligned_cols=115 Identities=17% Similarity=0.256 Sum_probs=83.2
Q ss_pred eeEeeeccceeeeee-----cccCCCCcCCCCccEEEEeeCC-----E-EecCCceEEEecCCCCCCEEEEEEEEeCCCC
Q psy6361 8 EQAMLLDLIPMHSRY-----NYTNLPQSRNPGQVIKRYLKDL-----L-YVTRNGSFVINNIAEKDTNVYTCTVSNAAGS 76 (148)
Q Consensus 8 ~~~~~g~~~~l~C~~-----~~~~~p~~~~~~~~~v~W~~~~-----~-~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 76 (148)
+.+..|....|.|.. .+.+.| .++|++++ + ....+..|.|.+++.+|+|.|+|.+.|..+.
T Consensus 131 ~~~~~g~~~~i~C~~~~~~~~~~~~~--------~i~W~k~~~~~~~r~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~ 202 (326)
T PHA02785 131 QIVNERSTGEMVCPNINAFIASNVNA--------DIIWSGHRRLRNKRLKQRTPGIITIEDVRKNDAGYYTCVLKYIYGD 202 (326)
T ss_pred ceecccCcEEEECCChhhcccCCCCc--------eEEEccCCccCCcceEecCCCeEEEeecChhhCeEEEEEEEeccCC
Confidence 345678888999973 233444 79999865 1 1223468999999999999999999998776
Q ss_pred cE----EEEEEEEe---cCCEEEeCCCceEEEecCCcEEEEeeeecccC---CeEEEEECCEEeec
Q psy6361 77 TS----KTIQMNVL---VPPFFKDEQQESVAIVVNHPMNISCSHYGVPT---PDFSWYKDGSLLRI 132 (148)
Q Consensus 77 ~~----~~~~l~v~---~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~p~---~~~~W~~~g~~l~~ 132 (148)
.. ..+.|.|. .+|.+ .. |....+..|..+.|.|.+.|.|. +.+.|++||..+..
T Consensus 203 ~~~~~t~~v~l~V~~~~~pp~~-~~-p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~ 266 (326)
T PHA02785 203 KTYNVTRIVKLEVRDRIIPPTM-QL-PEGVVTSIGSNLTIACRVSLRPPTTDADVFWISNGMYYEE 266 (326)
T ss_pred EEEeEEEEEEEEEeccCCCcee-cC-CCcEEecCCCcEEEEEEEECCCCCCCceEEEEECCEECCC
Confidence 33 23345554 24443 33 55667778999999999998876 48999999998854
No 11
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.63 E-value=4.6e-15 Score=78.01 Aligned_cols=62 Identities=19% Similarity=0.296 Sum_probs=52.6
Q ss_pred ceeeeeecccCCCCcCCCCccEEEEeeCCEEec---CCceEEEecCCCCCCEEEEEEEEeCCCCcEEEEEEEE
Q psy6361 16 IPMHSRYNYTNLPQSRNPGQVIKRYLKDLLYVT---RNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNV 85 (148)
Q Consensus 16 ~~l~C~~~~~~~p~~~~~~~~~v~W~~~~~~~~---~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v 85 (148)
+.|.|.+.+.|.| .+.|+|++.... ....|.|.++..+|+|.|+|.+.|..+..+.++.+.+
T Consensus 1 ~~l~c~v~g~P~P--------~v~W~kdg~~l~~~~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l 65 (67)
T cd05863 1 VKLPVKVAAYPPP--------EFQWYKDGKLISGKHSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLEL 65 (67)
T ss_pred CEEEEEEEEeCCC--------EEEEEECCEECcccCCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEE
Confidence 4789999999999 699999984443 4568999999999999999999999997666666654
No 12
>KOG4194|consensus
Probab=99.63 E-value=1.5e-15 Score=107.38 Aligned_cols=117 Identities=21% Similarity=0.375 Sum_probs=99.5
Q ss_pred eeeeEeeeccceeeeeecccCCCCcCCCCccEEEEeeCC------------------------EEecCCceEEEecCCCC
Q psy6361 6 NVEQAMLLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDL------------------------LYVTRNGSFVINNIAEK 61 (148)
Q Consensus 6 ~~~~~~~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~------------------------~~~~~~~~l~i~~~~~~ 61 (148)
..+.++.|++++|+|.+.+... .++++.|.+++ ...+....|++.++.-.
T Consensus 511 e~~~al~g~nirftC~a~sssa------splsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~nVt~t 584 (873)
T KOG4194|consen 511 ETVSALIGENIRFTCNAYSSSA------SPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDNVTFT 584 (873)
T ss_pred hHhhhhhccceEEEEEeccCCC------CCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeeeeeecc
Confidence 4567889999999999887522 12489999985 11122357999999999
Q ss_pred CCEEEEEEEEeCCCC-cEEEEEEEEecCCEEEeCCCceEEEecCCcEEEEeeeecccCCeEEEEECCEE
Q psy6361 62 DTNVYTCTVSNAAGS-TSKTIQMNVLVPPFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSL 129 (148)
Q Consensus 62 d~g~y~C~~~~~~~~-~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~g~~ 129 (148)
|+|.|.|.+.|.+|. .+..+.++|...|.|+.. |.+..+..|..+.+.|.+.|.|.|++.|-|+|..
T Consensus 585 d~grYQCVvtN~FGStysqk~KltV~~~PsFtkt-P~dltl~tg~mArl~CaAtG~P~PeIawqkdggt 652 (873)
T KOG4194|consen 585 DEGRYQCVVTNHFGSTYSQKAKLTVNQAPSFTKT-PEDLTLRTGQMARLECAATGHPRPEIAWQKDGGT 652 (873)
T ss_pred cCceEEEEEecccCcchhheeEEEeeccCccccC-cccceeecccceeeeeeccCCCCcceeehhcCCC
Confidence 999999999999987 677789999999999999 9999999999999999999999999999998766
No 13
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.63 E-value=4.1e-15 Score=79.79 Aligned_cols=65 Identities=23% Similarity=0.295 Sum_probs=54.9
Q ss_pred eccceeeeeecccCCCCcCCCCccEEEEeeCC--------EEecCCceEEEecCCCCCCEEEEEEEEeCCCCcEEEEEEE
Q psy6361 13 LDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDL--------LYVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMN 84 (148)
Q Consensus 13 g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~--------~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~ 84 (148)
|+.+.|.|.+.+.|.| .+.|+|++ .....+..|.|.++..+|+|.|+|.|.|..|.......|.
T Consensus 1 G~~~~l~C~~~g~P~p--------~v~W~k~~~~l~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~ 72 (73)
T cd05852 1 GGRVIIECKPKAAPKP--------KFSWSKGTELLVNNSRISIWDDGSLEILNITKLDEGSYTCFAENNRGKANSTGVLS 72 (73)
T ss_pred CCeEEEEEecceeCCC--------EEEEEeCCEecccCCCEEEcCCCEEEECcCChhHCEEEEEEEECCCCceeEEEEEE
Confidence 5778999999999988 69999987 2233557899999999999999999999999877777765
Q ss_pred E
Q psy6361 85 V 85 (148)
Q Consensus 85 v 85 (148)
|
T Consensus 73 ~ 73 (73)
T cd05852 73 V 73 (73)
T ss_pred C
Confidence 3
No 14
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.61 E-value=1.2e-14 Score=80.50 Aligned_cols=72 Identities=21% Similarity=0.249 Sum_probs=59.9
Q ss_pred eeeeEeeeccceeeeeecccCCCCcCCCCccEEEEeeCCEEe------------cCCceEEEecCCCCCCEEEEEEEEeC
Q psy6361 6 NVEQAMLLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDLLYV------------TRNGSFVINNIAEKDTNVYTCTVSNA 73 (148)
Q Consensus 6 ~~~~~~~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~~~~------------~~~~~l~i~~~~~~d~g~y~C~~~~~ 73 (148)
....+..|+.+.|.|.+.|.|.| .+.|+|++... .....|.|.++..+|+|.|+|.+.|.
T Consensus 3 ~~~~v~~G~~v~l~c~~~G~P~P--------~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~ 74 (86)
T cd05894 3 NTIVVVAGNKLRLDVPISGEPAP--------TVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNP 74 (86)
T ss_pred CEEEEEcCCEEEEEeeEeecCCC--------eEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeC
Confidence 35678899999999999999999 69999997211 12357999999999999999999999
Q ss_pred CCCcEEEEEEEE
Q psy6361 74 AGSTSKTIQMNV 85 (148)
Q Consensus 74 ~~~~~~~~~l~v 85 (148)
.|.....+.|.|
T Consensus 75 ~G~~~~~~~l~V 86 (86)
T cd05894 75 VGEDHASLFVKV 86 (86)
T ss_pred CCcEEEEEEEEC
Confidence 998777766653
No 15
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.61 E-value=9.4e-15 Score=79.17 Aligned_cols=65 Identities=15% Similarity=0.264 Sum_probs=54.9
Q ss_pred eccceeeeeecccCCCCcCCCCccEEEEeeCCEE----------ecCCceEEEecCCCCCCEEEEEEEEeCCCCcEEEEE
Q psy6361 13 LDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDLLY----------VTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQ 82 (148)
Q Consensus 13 g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~~~----------~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~ 82 (148)
|+.+.|.|.+.+.|.| .++|+|++.. ......|.|.++..+|+|.|.|.+.|..|.....+.
T Consensus 1 G~~v~l~C~~~G~P~p--------~i~W~k~g~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 72 (76)
T cd05867 1 GETARLDCQVEGIPTP--------NITWSINGAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEARNRHGNLLANAH 72 (76)
T ss_pred CCeEEEEEEeeEeCCC--------eEEEEECCEECCCCCCCceEEeeCCEEEECCCChhhCEEEEEEEECCCCeEEEEEE
Confidence 6789999999999988 6999999721 223468999999999999999999999998777777
Q ss_pred EEE
Q psy6361 83 MNV 85 (148)
Q Consensus 83 l~v 85 (148)
|.|
T Consensus 73 l~V 75 (76)
T cd05867 73 VHV 75 (76)
T ss_pred EEE
Confidence 765
No 16
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.61 E-value=4.4e-14 Score=96.18 Aligned_cols=112 Identities=10% Similarity=0.108 Sum_probs=82.3
Q ss_pred eeeEeeeccceeeeee-----cccCCCCcCCCCccEEEEeeCCE------EecCCceEEEecCCCCCCEEEEEEEEeCCC
Q psy6361 7 VEQAMLLDLIPMHSRY-----NYTNLPQSRNPGQVIKRYLKDLL------YVTRNGSFVINNIAEKDTNVYTCTVSNAAG 75 (148)
Q Consensus 7 ~~~~~~g~~~~l~C~~-----~~~~~p~~~~~~~~~v~W~~~~~------~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~ 75 (148)
...+..|+.+.+.|.+ .+.+.| +++|+|++. ....+..+.|.++..+|+|.|+|.+.|..+
T Consensus 35 ~~~~~~ge~~~l~C~~~~~~~~g~p~~--------~i~W~K~g~~~~~~~~~~~g~~l~i~~~~~~DsG~Y~C~a~N~~g 106 (326)
T PHA02785 35 SFMELENEPVILPCPQINTLSSGYNIL--------DILWEKRGADNDRIIPIDNGSNMLILNPTQSDSGIYICITKNETY 106 (326)
T ss_pred hhhhhcCCCEEEECCCccccccCCCCc--------eEEEEECCCccceEEEccCCceEEEcccCcccCeEEEEEEECCCc
Confidence 3467789999999997 454544 799999861 112334588999999999999999999988
Q ss_pred CcEEEEEEEEecC--CEEEeCCCceEEEecCCcEEEEeee-----ecccCCeEEEEECC
Q psy6361 76 STSKTIQMNVLVP--PFFKDEQQESVAIVVNHPMNISCSH-----YGVPTPDFSWYKDG 127 (148)
Q Consensus 76 ~~~~~~~l~v~~~--p~~~~~~~~~~~~~~g~~~~l~C~~-----~g~p~~~~~W~~~g 127 (148)
.....+.|.|... |.+... +....+.+|..+.+.|.. .+.|.+.++|++++
T Consensus 107 ~~~~s~~L~V~~~~~~~~~~~-~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~ 164 (326)
T PHA02785 107 CDMMSLNLTIVSVSESNIDLI-SYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHR 164 (326)
T ss_pred ceEEEEEEEEEecCCCcccee-eccceecccCcEEEECCChhhcccCCCCceEEEccCC
Confidence 7667777777632 333222 334556789999999972 45688899999865
No 17
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.60 E-value=1.6e-14 Score=82.26 Aligned_cols=74 Identities=20% Similarity=0.202 Sum_probs=62.1
Q ss_pred ceeeeEeeeccceeeeeecccCCCCcCCCCccEEEEeeCCEEec-----------------CCceEEEecCCCCCCEEEE
Q psy6361 5 MNVEQAMLLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDLLYVT-----------------RNGSFVINNIAEKDTNVYT 67 (148)
Q Consensus 5 ~~~~~~~~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~~~~~-----------------~~~~l~i~~~~~~d~g~y~ 67 (148)
...+.+..|+.+.|.|.+.+.|.| .+.|+|++.... ....|.|.++..+|+|.|+
T Consensus 10 ~~~~~~~~~~~~~l~~~v~g~P~P--------~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Yt 81 (101)
T cd05859 10 GQLEFANLHEVKEFVVEVEAYPPP--------QIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYT 81 (101)
T ss_pred CceEEEecCCcEEEEEEEEEeCCC--------ceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEE
Confidence 346788999999999999999999 599999982211 1257999999999999999
Q ss_pred EEEEeCCCCcEEEEEEEEe
Q psy6361 68 CTVSNAAGSTSKTIQMNVL 86 (148)
Q Consensus 68 C~~~~~~~~~~~~~~l~v~ 86 (148)
|.|.|..+..+.++.|.|.
T Consensus 82 c~A~N~~g~~~~t~~l~V~ 100 (101)
T cd05859 82 ALAQNEDAVKSYTFALQIQ 100 (101)
T ss_pred EEEEcCCceEEEEEEEEEE
Confidence 9999999988877777764
No 18
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.59 E-value=1.4e-14 Score=81.35 Aligned_cols=74 Identities=18% Similarity=0.207 Sum_probs=60.0
Q ss_pred CcceeeeEeeeccceeeeeecccCCCCcCCCCccEEEEeeCCE---------Ee-c--CCceEEEecCCCCCCEEEEEEE
Q psy6361 3 GTMNVEQAMLLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDLL---------YV-T--RNGSFVINNIAEKDTNVYTCTV 70 (148)
Q Consensus 3 ~~~~~~~~~~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~~---------~~-~--~~~~l~i~~~~~~d~g~y~C~~ 70 (148)
+......+..|+.+.|.|.+.+.|.| .+.|+|++. .. . ....|.|.++..+|+|.|+|.+
T Consensus 6 ~lp~~v~v~~G~~v~L~C~v~G~P~p--------~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a 77 (92)
T cd05737 6 GLPDVVTIMEGKTLNLTCTVFGDPDP--------EVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVV 77 (92)
T ss_pred cCCceEEEeCCCcEEEEEEEEecCCC--------eEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEE
Confidence 34456788999999999999999988 699999971 11 1 1247999999999999999999
Q ss_pred EeCCCCcEEEEEEE
Q psy6361 71 SNAAGSTSKTIQMN 84 (148)
Q Consensus 71 ~~~~~~~~~~~~l~ 84 (148)
.|..|.....+.+.
T Consensus 78 ~N~~G~~~~~~~v~ 91 (92)
T cd05737 78 KNKYGGETVDVTVS 91 (92)
T ss_pred EECCCcceEEEEEe
Confidence 99999877766654
No 19
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.59 E-value=3e-14 Score=79.34 Aligned_cols=72 Identities=17% Similarity=0.154 Sum_probs=61.0
Q ss_pred eeeeEeeeccceeeeeecccCCCCcCCCCccEEEEeeCC-------EEecCCceEEEecCCCCCCEEEEEEEEeCCCCcE
Q psy6361 6 NVEQAMLLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDL-------LYVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTS 78 (148)
Q Consensus 6 ~~~~~~~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~-------~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~ 78 (148)
....+..|+.+.|.|.+.+.|.| .+.|+|++ ........|.|.+++.+|+|.|.|.+.|..|...
T Consensus 9 ~~~~~~~g~~v~l~C~~~g~P~p--------~v~W~k~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~ 80 (88)
T cd04968 9 KDTYALKGQNVTLECFALGNPVP--------QIKWRKVDGSMPSSAEISMSGAVLKIPNIQFEDEGTYECEAENIKGKDT 80 (88)
T ss_pred CceEEeCCCcEEEEEEeeEeCCC--------EEEEEECCCcCCCccEEEEeCCEEEECCCCcccCEEEEEEEEECCCcEE
Confidence 34567899999999999999988 69999976 2223567899999999999999999999999887
Q ss_pred EEEEEEE
Q psy6361 79 KTIQMNV 85 (148)
Q Consensus 79 ~~~~l~v 85 (148)
....|.|
T Consensus 81 ~~~~l~V 87 (88)
T cd04968 81 HQGRIYV 87 (88)
T ss_pred EEEEEEE
Confidence 7777765
No 20
>KOG4221|consensus
Probab=99.58 E-value=1.4e-13 Score=103.43 Aligned_cols=120 Identities=25% Similarity=0.476 Sum_probs=100.3
Q ss_pred eeeeEeeeccceeeeeecccCCCCcCCCCccEEEEeeCC--------EEecCCceEEEecCCCCCCEEEEEEEEeCCCC-
Q psy6361 6 NVEQAMLLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDL--------LYVTRNGSFVINNIAEKDTNVYTCTVSNAAGS- 76 (148)
Q Consensus 6 ~~~~~~~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~--------~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~- 76 (148)
....+..|+.+.|.|.+.+.+.| .+.|.|++ .....++.|.|.++...|.|.|.|.+.+....
T Consensus 148 ~~~t~~~g~ta~f~c~vn~e~~p--------~i~w~kn~~pl~~~~r~i~lpsG~L~I~~~qp~d~g~yrc~vt~g~~~r 219 (1381)
T KOG4221|consen 148 ESTTLLYGQTALFSCEVNAEPVP--------TIMWLKNDQPLPLDSRVIVLPSGALEISGLQPSDTGEYRCVVTGGASQR 219 (1381)
T ss_pred cceeEecCCcEEEEEEEcCccCc--------eeEEecccccccCCCcEEEcCCCcEEecccccCCCceEEEEEecCCcCC
Confidence 35678899999999999998887 69999986 45667889999999999999999999987655
Q ss_pred cEEEEEEEEecCC------EEEeCCCceEEEecCCcEEEEeeeecccCCeEEEEECCEEeecCC
Q psy6361 77 TSKTIQMNVLVPP------FFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQS 134 (148)
Q Consensus 77 ~~~~~~l~v~~~p------~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~g~~l~~~~ 134 (148)
.+....|+|...| .|... +....+.+|+.+.|.|.+.|.|.|.+.|.+||+.+..++
T Consensus 220 ~S~~a~ltv~s~~~~~~~~~fl~~-p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~ds 282 (1381)
T KOG4221|consen 220 TSNEAELTVLSDPGALNKLVFLDE-PSNAVVVEGDDVVLECVVSGVPKPSVKWLRNGEKISVDS 282 (1381)
T ss_pred ccceeEEEecCCcccccceeeecC-CCccccccCCcEEEEEEecCCCCCceEEeeCCeeeeecc
Confidence 4556677776333 34444 777888999999999999999999999999999998765
No 21
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.58 E-value=2.1e-14 Score=79.40 Aligned_cols=74 Identities=18% Similarity=0.301 Sum_probs=61.8
Q ss_pred cceeeeEeeeccceeeeeecccCCCCcCCCCccEEEEeeCCE-------EecCCceEEEecCCCCCCEEEEEEEEeCCCC
Q psy6361 4 TMNVEQAMLLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDLL-------YVTRNGSFVINNIAEKDTNVYTCTVSNAAGS 76 (148)
Q Consensus 4 ~~~~~~~~~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~~-------~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 76 (148)
...+..+..|+.+.|.|.+.+.|.| .+.|+|++. .......|.|.++..+|+|.|+|.+.|..|.
T Consensus 5 ~p~~~~~~~G~~~~l~C~~~g~p~p--------~v~W~k~g~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~ 76 (85)
T cd05728 5 VISDTEADIGSSLRWECKASGNPRP--------AYRWLKNGQPLASENRIEVEAGDLRITKLSLSDSGMYQCVAENKHGT 76 (85)
T ss_pred cCCccEEcCCCcEEEEEEeeEeCCC--------EEEEEECCEECCCCCeEEEeCCEEEEeeCCHHHCEEEEEEEECCCCe
Confidence 3456788999999999999999988 699999972 2234568999999999999999999999998
Q ss_pred cEEEEEEEE
Q psy6361 77 TSKTIQMNV 85 (148)
Q Consensus 77 ~~~~~~l~v 85 (148)
....+.|.|
T Consensus 77 ~~~~~~l~V 85 (85)
T cd05728 77 IYASAELAV 85 (85)
T ss_pred EEEEEEEEC
Confidence 777766653
No 22
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.58 E-value=3.5e-14 Score=78.46 Aligned_cols=70 Identities=20% Similarity=0.275 Sum_probs=57.6
Q ss_pred ccceeeeeecccCCCCcCCCCccEEEEeeCCEEe---------------cCCceEEEecCCCCCCEEEEEEEEeCCCCcE
Q psy6361 14 DLIPMHSRYNYTNLPQSRNPGQVIKRYLKDLLYV---------------TRNGSFVINNIAEKDTNVYTCTVSNAAGSTS 78 (148)
Q Consensus 14 ~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~~~~---------------~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~ 78 (148)
+++.|.|.+.+.|.|. ..+.|++++... .....|.|.+++..|+|.|+|.|.|..+..+
T Consensus 1 ~~~~L~C~a~g~P~p~------~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~ 74 (85)
T cd05854 1 ENLTLQCHASHDPTMD------LTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSAS 74 (85)
T ss_pred CcEEEEEEEecCCCCC------eEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEE
Confidence 4689999999999873 258999987211 1235799999999999999999999999999
Q ss_pred EEEEEEEecCC
Q psy6361 79 KTIQMNVLVPP 89 (148)
Q Consensus 79 ~~~~l~v~~~p 89 (148)
..+.|.|..+|
T Consensus 75 ~~~~L~V~~~P 85 (85)
T cd05854 75 ASATLVVRGPP 85 (85)
T ss_pred EEEEEEEECCC
Confidence 99999988765
No 23
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.57 E-value=2.9e-14 Score=76.83 Aligned_cols=62 Identities=19% Similarity=0.318 Sum_probs=50.8
Q ss_pred ceeeeeecccCCCCcCCCCccEEEEeeCCEEe----------c-CC--ceEEEecCCCCCCEEEEEEEEeCCCCcEEEEE
Q psy6361 16 IPMHSRYNYTNLPQSRNPGQVIKRYLKDLLYV----------T-RN--GSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQ 82 (148)
Q Consensus 16 ~~l~C~~~~~~~p~~~~~~~~~v~W~~~~~~~----------~-~~--~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~ 82 (148)
+.|.|.+.|.|.| .+.|+|++... . .. ..|.|.++..+|+|.|+|.+.|..|.......
T Consensus 1 v~l~C~v~G~P~P--------~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~ 72 (75)
T cd05892 1 VKLECQISAIPPP--------KIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHAR 72 (75)
T ss_pred CEEEEEEEecCCC--------eEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEE
Confidence 5799999999999 69999987211 1 11 26999999999999999999999998877777
Q ss_pred EEE
Q psy6361 83 MNV 85 (148)
Q Consensus 83 l~v 85 (148)
|.|
T Consensus 73 L~V 75 (75)
T cd05892 73 LDV 75 (75)
T ss_pred EeC
Confidence 654
No 24
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.57 E-value=3e-14 Score=76.56 Aligned_cols=65 Identities=22% Similarity=0.268 Sum_probs=54.6
Q ss_pred eccceeeeeecccCCCCcCCCCccEEEEeeCCE--------EecCCceEEEecCCCCCCEEEEEEEEeCCCCcEEEEEEE
Q psy6361 13 LDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDLL--------YVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMN 84 (148)
Q Consensus 13 g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~~--------~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~ 84 (148)
|+.+.|.|.+.+.|.| .++|+|++. .......|.|.+++.+|+|.|+|.+.|..|.....+.|.
T Consensus 1 G~~v~L~C~~~g~P~p--------~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 72 (73)
T cd04969 1 GGDVIIECKPKAAPKP--------TISWSKGTELLTNSSRICIWPDGSLEILNVTKSDEGKYTCFAENFFGKANSTGSLS 72 (73)
T ss_pred CCeEEEEEeeeEcCCC--------EEEEEECCEEcccCCCEEECCCCeEEEccCChhHCEEEEEEEECCCCceEEEEEEE
Confidence 6788999999998887 699999972 223456899999999999999999999999877777765
Q ss_pred E
Q psy6361 85 V 85 (148)
Q Consensus 85 v 85 (148)
|
T Consensus 73 V 73 (73)
T cd04969 73 V 73 (73)
T ss_pred C
Confidence 4
No 25
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.57 E-value=9.5e-14 Score=78.41 Aligned_cols=74 Identities=20% Similarity=0.230 Sum_probs=61.5
Q ss_pred eeeeEeeeccceeeeeecccCCCCcCCCCccEEEEeeCCEE----------ecCCceEEEecCCCCCCEEEEEEEEeCCC
Q psy6361 6 NVEQAMLLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDLLY----------VTRNGSFVINNIAEKDTNVYTCTVSNAAG 75 (148)
Q Consensus 6 ~~~~~~~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~~~----------~~~~~~l~i~~~~~~d~g~y~C~~~~~~~ 75 (148)
....+..|+.+.|.|.+.+.|.| .+.|++++.. ......|.|.++..+|+|.|+|.+.|..|
T Consensus 11 ~~~~~~~G~~v~L~C~~~g~P~p--------~v~W~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G 82 (95)
T cd05730 11 VNATANLGQSVTLACDADGFPEP--------TMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDKLDEAEYTCIAENKAG 82 (95)
T ss_pred cceEEeCCCCEEEEEeccEeCCC--------EEEEEECCEECcCCCCEEEEeCCCCEEEECCCChhhCEEEEEEEEcCCC
Confidence 34578899999999999999888 6999998721 12345799999999999999999999999
Q ss_pred CcEEEEEEEEec
Q psy6361 76 STSKTIQMNVLV 87 (148)
Q Consensus 76 ~~~~~~~l~v~~ 87 (148)
.....+.|.|..
T Consensus 83 ~~~~~~~L~V~~ 94 (95)
T cd05730 83 EQEAEIHLKVFA 94 (95)
T ss_pred eEEEEEEEEEEe
Confidence 888888887753
No 26
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.56 E-value=5.5e-14 Score=78.63 Aligned_cols=70 Identities=19% Similarity=0.241 Sum_probs=57.9
Q ss_pred eeeEeeeccceeeeeecccCCCCcCCCCccEEEEeeCCE--------EecCCceEEEecCCCCCCEEEEEEEEeCCCC-c
Q psy6361 7 VEQAMLLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDLL--------YVTRNGSFVINNIAEKDTNVYTCTVSNAAGS-T 77 (148)
Q Consensus 7 ~~~~~~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~~--------~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~-~ 77 (148)
.+.+..|+.+.|.|.+.+. .| .+.|+|++. .......|.|.+++.+|+|.|.|.+.|..|. .
T Consensus 12 ~~~v~~g~~v~l~C~a~g~-~p--------~i~W~kng~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~ 82 (91)
T cd05740 12 NQPPEDNQPVTLTCEAEGQ-AT--------YIWWVNNGSLLVPPRLQLSNDNRTLTFNNVTRSDTGHYQCEASNEVSNMT 82 (91)
T ss_pred ccccccCCcEEEEEEeCCC-CC--------EEEEEECCEECCCCCEEEeCCCCEEEECcCChhhCEEEEEEEEcCCCCEE
Confidence 4578899999999999999 77 699999972 1234468999999999999999999999987 5
Q ss_pred EEEEEEEE
Q psy6361 78 SKTIQMNV 85 (148)
Q Consensus 78 ~~~~~l~v 85 (148)
+..+.|.|
T Consensus 83 S~~~~L~V 90 (91)
T cd05740 83 SDPYILNV 90 (91)
T ss_pred eeeEEEEe
Confidence 55666665
No 27
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.56 E-value=4.3e-14 Score=75.53 Aligned_cols=63 Identities=13% Similarity=0.287 Sum_probs=51.7
Q ss_pred cceeeeeecccCCCCcCCCCccEEEEeeCCE--------EecCCceEEEecCCCCCCEEEEEEEEeCCCCcEEEEEEEE
Q psy6361 15 LIPMHSRYNYTNLPQSRNPGQVIKRYLKDLL--------YVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNV 85 (148)
Q Consensus 15 ~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~~--------~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v 85 (148)
++.|.|.+.|.|.| .++|+|++. .......+.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 ~v~l~C~~~G~P~p--------~v~W~k~g~~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 71 (71)
T cd05723 1 DVIFECEVTGKPTP--------TVKWVKNGDMVIPSDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII 71 (71)
T ss_pred CEEEEEEEEEeCCC--------EEEEEECCeECCCCCCEEEEecCCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence 36899999999998 699999871 2223456889999999999999999999998777776653
No 28
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.56 E-value=4e-14 Score=76.63 Aligned_cols=65 Identities=20% Similarity=0.284 Sum_probs=55.1
Q ss_pred eccceeeeeecccCCCCcCCCCccEEEEeeCCEEe----------cCCceEEEecCCCCCCEEEEEEEEeCCCCcEEEEE
Q psy6361 13 LDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDLLYV----------TRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQ 82 (148)
Q Consensus 13 g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~~~~----------~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~ 82 (148)
|+.+.|.|.+.+.|.| +++|+|++... .....|.|.++..+|+|.|.|.+.|..|.....+.
T Consensus 1 g~~~~l~C~a~G~P~P--------~i~W~k~g~~i~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~ 72 (76)
T cd05868 1 GEDGTLICRANGNPKP--------SISWLTNGVPIEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCNASNEYGYLLANAF 72 (76)
T ss_pred CCCEEEEEEeeEeCCC--------eEEEEECCEEccccCCCceEEecCCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEE
Confidence 5788999999999998 69999997221 23357899999999999999999999999888888
Q ss_pred EEE
Q psy6361 83 MNV 85 (148)
Q Consensus 83 l~v 85 (148)
|.|
T Consensus 73 l~v 75 (76)
T cd05868 73 VNV 75 (76)
T ss_pred EEe
Confidence 776
No 29
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.56 E-value=6e-14 Score=74.99 Aligned_cols=62 Identities=19% Similarity=0.291 Sum_probs=52.7
Q ss_pred ceeeeeecccCCCCcCCCCccEEEEeeCC--------EEecCCceEEEecCCCCCCEEEEEEEEeCCCCcEEEEEEEE
Q psy6361 16 IPMHSRYNYTNLPQSRNPGQVIKRYLKDL--------LYVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNV 85 (148)
Q Consensus 16 ~~l~C~~~~~~~p~~~~~~~~~v~W~~~~--------~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v 85 (148)
+.|.|.+.|.|.| .+.|+|++ ........|.|.++..+|+|.|+|.|.|..|..+..+.|.|
T Consensus 1 ~~L~C~~~G~P~P--------~v~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05876 1 LVLECIAEGLPTP--------EVHWDRIDGPLSPNRTKKLNNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV 70 (71)
T ss_pred CEEEEEeeEecCC--------eEEEEECCcCCCCCceeEEcCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence 4689999999999 69999986 22345678999999999999999999999998777777765
No 30
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.56 E-value=5e-14 Score=78.38 Aligned_cols=70 Identities=20% Similarity=0.232 Sum_probs=57.6
Q ss_pred eccceeeeeecccCCCCcCCCCccEEEEeeCCEEec-------------C---CceEEEecCCCCCCEEEEEEEEeCCCC
Q psy6361 13 LDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDLLYVT-------------R---NGSFVINNIAEKDTNVYTCTVSNAAGS 76 (148)
Q Consensus 13 g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~~~~~-------------~---~~~l~i~~~~~~d~g~y~C~~~~~~~~ 76 (148)
|+.+.|.|.+.+.|.| .+.|+|++.... . ...|.|.++..+|+|.|+|.|.|..|.
T Consensus 1 g~~~~l~C~~~g~p~~--------~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~ 72 (88)
T cd05735 1 GQKKEMSCTAHGEKPI--------IVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGE 72 (88)
T ss_pred CCeEEEEEEEECCCCC--------EEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCc
Confidence 6789999999999877 699999871110 1 146999999999999999999999999
Q ss_pred cEEEEEEEEecCCE
Q psy6361 77 TSKTIQMNVLVPPF 90 (148)
Q Consensus 77 ~~~~~~l~v~~~p~ 90 (148)
....+.|.|..+|.
T Consensus 73 ~~~~~~L~V~~~P~ 86 (88)
T cd05735 73 DRGIIQLTVQEPPD 86 (88)
T ss_pred ceEEEEEEEeCCCC
Confidence 88889999886553
No 31
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.55 E-value=6.8e-14 Score=74.73 Aligned_cols=62 Identities=16% Similarity=0.269 Sum_probs=51.7
Q ss_pred ceeeeeecccCCCCcCCCCccEEEEeeCC-------EEecCCceEEEecCCCCCCEEEEEEEEeCCCCcEEEEEEEE
Q psy6361 16 IPMHSRYNYTNLPQSRNPGQVIKRYLKDL-------LYVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNV 85 (148)
Q Consensus 16 ~~l~C~~~~~~~p~~~~~~~~~v~W~~~~-------~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v 85 (148)
+.|.|.+.+.|.| .+.|+|++ +.......|.|.++..+|+|.|+|.+.|..+.....+.+.+
T Consensus 1 ~~l~c~v~g~P~p--------~v~W~k~g~~l~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~ 69 (71)
T cd04976 1 VRLPVKVKAYPPP--------EIQWYKNGKLISEKNRTKKSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTL 69 (71)
T ss_pred CEEEeEEEEeCCC--------EEEEEECCEECCCCCEEEcCCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEE
Confidence 4689999999998 69999998 23345678999999999999999999999987666665554
No 32
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.55 E-value=6e-14 Score=75.97 Aligned_cols=65 Identities=18% Similarity=0.263 Sum_probs=55.4
Q ss_pred eccceeeeeecccCCCCcCCCCccEEEEeeCCE----------EecCCceEEEecCCCCCCEEEEEEEEeCCCCcEEEEE
Q psy6361 13 LDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDLL----------YVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQ 82 (148)
Q Consensus 13 g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~~----------~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~ 82 (148)
|+.+.|.|.+.+.|.| .+.|++++. .......|.|.+++.+|+|.|+|.+.|..|.....+.
T Consensus 1 G~~~~l~C~~~g~P~p--------~i~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~ 72 (76)
T cd04978 1 GETGRLDCEAEGIPQP--------TITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAF 72 (76)
T ss_pred CCeEEEEEEceeeCCC--------EEEEEECCEECCCCCCcceEEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEE
Confidence 6789999999999988 699999872 2334578999999999999999999999998877777
Q ss_pred EEE
Q psy6361 83 MNV 85 (148)
Q Consensus 83 l~v 85 (148)
|.|
T Consensus 73 l~V 75 (76)
T cd04978 73 VHV 75 (76)
T ss_pred EEE
Confidence 765
No 33
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.55 E-value=3.4e-14 Score=76.61 Aligned_cols=62 Identities=24% Similarity=0.299 Sum_probs=50.5
Q ss_pred ceeeeeecccCCCCcCCCCccEEEEeeCCEEec----------CC---ceEEEecCCCCCCEEEEEEEEeCCCCcEEEEE
Q psy6361 16 IPMHSRYNYTNLPQSRNPGQVIKRYLKDLLYVT----------RN---GSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQ 82 (148)
Q Consensus 16 ~~l~C~~~~~~~p~~~~~~~~~v~W~~~~~~~~----------~~---~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~ 82 (148)
+.|.|.+.|.|.| .+.|+|++.... .. ..|.|.++..+|+|.|+|.|.|..|..+....
T Consensus 1 v~l~C~v~G~P~P--------~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~ 72 (75)
T cd05893 1 VRLECRVSGVPHP--------QIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTAR 72 (75)
T ss_pred CEEEEEEeEecCC--------EEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEE
Confidence 5799999999999 699999862111 11 15899999999999999999999998877777
Q ss_pred EEE
Q psy6361 83 MNV 85 (148)
Q Consensus 83 l~v 85 (148)
|.|
T Consensus 73 L~V 75 (75)
T cd05893 73 LDV 75 (75)
T ss_pred EeC
Confidence 654
No 34
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.55 E-value=9.2e-14 Score=76.87 Aligned_cols=70 Identities=21% Similarity=0.300 Sum_probs=57.0
Q ss_pred ccceeeeeecccCCCCcCCCCccEEEEeeCCEEe---------------cCCceEEEecCCCCCCEEEEEEEEeCCCCcE
Q psy6361 14 DLIPMHSRYNYTNLPQSRNPGQVIKRYLKDLLYV---------------TRNGSFVINNIAEKDTNVYTCTVSNAAGSTS 78 (148)
Q Consensus 14 ~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~~~~---------------~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~ 78 (148)
+.+.|.|.+.+.|.|. ..+.|++++... .....|.|.+++..|+|.|+|.+.|..+..+
T Consensus 1 e~~~L~C~~~g~P~p~------i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~ 74 (85)
T cd04970 1 ESITLQCHASHDPTLD------LTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLS 74 (85)
T ss_pred CcEEEEEEEecCCCCC------eEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEE
Confidence 4678999999998773 257999987211 1345799999999999999999999999888
Q ss_pred EEEEEEEecCC
Q psy6361 79 KTIQMNVLVPP 89 (148)
Q Consensus 79 ~~~~l~v~~~p 89 (148)
..+.|.|..+|
T Consensus 75 ~~~~l~V~~pP 85 (85)
T cd04970 75 ASADLIVRGPP 85 (85)
T ss_pred EEEEEEEECCC
Confidence 88889888765
No 35
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.55 E-value=7.2e-14 Score=76.76 Aligned_cols=70 Identities=17% Similarity=0.285 Sum_probs=56.5
Q ss_pred ccceeeeeecccCCCCcCCCCccEEEEeeCCEEe---------------cCCceEEEecCCCCCCEEEEEEEEeCCCCcE
Q psy6361 14 DLIPMHSRYNYTNLPQSRNPGQVIKRYLKDLLYV---------------TRNGSFVINNIAEKDTNVYTCTVSNAAGSTS 78 (148)
Q Consensus 14 ~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~~~~---------------~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~ 78 (148)
+++.|.|.+.+.+.+. +.+.|++++... .....|.|.+++.+|+|.|+|.|+|.....+
T Consensus 1 ~~~~l~C~v~~d~~l~------~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~ 74 (85)
T cd05853 1 ESIVLPCQVSHDHSLD------IVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLS 74 (85)
T ss_pred CcEEEEEEeccCCCCC------cEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceE
Confidence 4678999998855321 279999998222 1335799999999999999999999999999
Q ss_pred EEEEEEEecCC
Q psy6361 79 KTIQMNVLVPP 89 (148)
Q Consensus 79 ~~~~l~v~~~p 89 (148)
....|.|..+|
T Consensus 75 a~a~L~V~~pP 85 (85)
T cd05853 75 AAADLIVRGPP 85 (85)
T ss_pred EEEEEEEecCC
Confidence 99999998776
No 36
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.55 E-value=8.8e-14 Score=77.77 Aligned_cols=72 Identities=19% Similarity=0.252 Sum_probs=59.1
Q ss_pred eeeeEeeeccceeeeeecccCCCCcCCCCccEEEEeeCCEEe-----------cCCceEEEecCCCCCCEEEEEEEEeCC
Q psy6361 6 NVEQAMLLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDLLYV-----------TRNGSFVINNIAEKDTNVYTCTVSNAA 74 (148)
Q Consensus 6 ~~~~~~~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~~~~-----------~~~~~l~i~~~~~~d~g~y~C~~~~~~ 74 (148)
....+..|+.+.|.|.+.|.|.| .+.|++++... .....|.|.++..+|.|.|.|.|.|..
T Consensus 8 ~~~~v~~G~~v~l~C~~~G~P~p--------~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~ 79 (90)
T cd04972 8 NATVVYEGGTATIRCTAEGSPLP--------KVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPV 79 (90)
T ss_pred cCEEEcCCCcEEEEEEEEEcCCC--------eEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCC
Confidence 34558899999999999999998 69999997211 123479999999999999999999999
Q ss_pred CCcEEEEEEEE
Q psy6361 75 GSTSKTIQMNV 85 (148)
Q Consensus 75 ~~~~~~~~l~v 85 (148)
|.....+.|.|
T Consensus 80 G~~~~~~~L~v 90 (90)
T cd04972 80 GQANVSVQVTV 90 (90)
T ss_pred CceeEEEEEeC
Confidence 98777766653
No 37
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.54 E-value=1.2e-13 Score=76.37 Aligned_cols=70 Identities=21% Similarity=0.342 Sum_probs=56.8
Q ss_pred eeEeeeccceeeeeecccCCCCcCCCCccEEEEeeCCEEe------------cCCceEEEecCCCCCCEEEEEEEEeCCC
Q psy6361 8 EQAMLLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDLLYV------------TRNGSFVINNIAEKDTNVYTCTVSNAAG 75 (148)
Q Consensus 8 ~~~~~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~~~~------------~~~~~l~i~~~~~~d~g~y~C~~~~~~~ 75 (148)
..+..|+.+.|.|.+.+.|.| .+.|+|++... .....|.|.++..+|+|.|+|.+.|..|
T Consensus 4 ~~v~~G~~~~L~C~~~g~P~p--------~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G 75 (85)
T cd05857 4 HAVPAANTVKFRCPAAGNPTP--------TMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYG 75 (85)
T ss_pred EEcCCCCEEEEEEEcCCCCCC--------EEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCC
Confidence 346789999999999998877 69999997211 1234688999999999999999999999
Q ss_pred CcEEEEEEEE
Q psy6361 76 STSKTIQMNV 85 (148)
Q Consensus 76 ~~~~~~~l~v 85 (148)
.....+.|.|
T Consensus 76 ~~~~~~~l~v 85 (85)
T cd05857 76 SINHTYHLDV 85 (85)
T ss_pred EEEEEEEEEC
Confidence 8777776654
No 38
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.53 E-value=8.5e-14 Score=73.99 Aligned_cols=60 Identities=18% Similarity=0.335 Sum_probs=50.4
Q ss_pred ceeeeeecccCCCCcCCCCccEEEEeeCCE--------EecCCceEEEecCCCCCCEEEEEEEEeCCCCcEEEEEE
Q psy6361 16 IPMHSRYNYTNLPQSRNPGQVIKRYLKDLL--------YVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQM 83 (148)
Q Consensus 16 ~~l~C~~~~~~~p~~~~~~~~~v~W~~~~~--------~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l 83 (148)
|.|.|.+.+.|.| .+.|+|++. .......|.|.++..+|+|.|+|.+.|..|..+..+.|
T Consensus 1 v~L~C~~~g~P~p--------~i~W~k~g~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L 68 (69)
T cd05746 1 VQIPCSAQGDPEP--------TITWNKDGVQVTESGKFHISPEGYLAIRDVGVADQGRYECVARNTIGYASVSMVL 68 (69)
T ss_pred CEeEecceEeCCC--------EEEEEECCEECCCCCCEEECCCCEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence 5789999999998 699999872 23346689999999999999999999999987766554
No 39
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.53 E-value=1.2e-13 Score=73.46 Aligned_cols=62 Identities=19% Similarity=0.343 Sum_probs=51.4
Q ss_pred ceeeeeecccCCCCcCCCCccEEEEeeCC-------EEecCCceEEEecCCCCCCEEEEEEEEeCCCCcEEEEEEEE
Q psy6361 16 IPMHSRYNYTNLPQSRNPGQVIKRYLKDL-------LYVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNV 85 (148)
Q Consensus 16 ~~l~C~~~~~~~p~~~~~~~~~v~W~~~~-------~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v 85 (148)
+.|.|.+.+.|.| .+.|+|++ ........|.|.++..+|+|.|+|.+.|..|.......|.|
T Consensus 1 v~l~C~~~g~P~p--------~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 69 (69)
T cd05725 1 VEFQCEVGGDPVP--------TVLWRKEDGELPKGRAEILDDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV 69 (69)
T ss_pred CEEEEECccCCCC--------EEEEEECCccCCCCcEEEeeCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence 4789999999988 69999986 22234668999999999999999999999998777766653
No 40
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.52 E-value=2.4e-13 Score=76.02 Aligned_cols=67 Identities=21% Similarity=0.279 Sum_probs=56.0
Q ss_pred eccceeeeeecccCCCCcCCCCccEEEEeeCCEE----------------ecCCceEEEecCCCCCCEEEEEEEEeCCCC
Q psy6361 13 LDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDLLY----------------VTRNGSFVINNIAEKDTNVYTCTVSNAAGS 76 (148)
Q Consensus 13 g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~~~----------------~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 76 (148)
|+.+.|.|.+.+.|.| .+.|+|++.. ......|.|.++..+|+|.|+|.+.|..|.
T Consensus 1 G~~v~L~C~~~g~P~p--------~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~ 72 (90)
T cd05726 1 GRTVTFQCEATGNPQP--------AIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTLNVAGS 72 (90)
T ss_pred CCEEEEEEECCccCCC--------EEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhCEEEEEEEEcCCCc
Confidence 6789999999999988 6999997621 122457999999999999999999999999
Q ss_pred cEEEEEEEEec
Q psy6361 77 TSKTIQMNVLV 87 (148)
Q Consensus 77 ~~~~~~l~v~~ 87 (148)
....+.|.|..
T Consensus 73 ~~~~~~l~V~~ 83 (90)
T cd05726 73 ILTKAYLEVTD 83 (90)
T ss_pred eEEEEEEEEee
Confidence 88888888763
No 41
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.52 E-value=1.5e-13 Score=74.03 Aligned_cols=62 Identities=29% Similarity=0.351 Sum_probs=51.4
Q ss_pred ceeeeeecccCCCCcCCCCccEEEEeeCCEE-----------ecCCceEEEecCCCCCCEEEEEEEEeCCCCcEEEEEEE
Q psy6361 16 IPMHSRYNYTNLPQSRNPGQVIKRYLKDLLY-----------VTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMN 84 (148)
Q Consensus 16 ~~l~C~~~~~~~p~~~~~~~~~v~W~~~~~~-----------~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~ 84 (148)
+.|.|.+.|.|.| .+.|+|++.. ......|.|.++..+|+|.|+|.+.|..|..+..+.|.
T Consensus 2 ~~l~c~~~G~P~p--------~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 73 (74)
T cd05748 2 VRLEVPISGRPTP--------TVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVK 73 (74)
T ss_pred EEEEeeEeeeCCC--------eEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEE
Confidence 6899999999999 6999999721 12245799999999999999999999999877776665
Q ss_pred E
Q psy6361 85 V 85 (148)
Q Consensus 85 v 85 (148)
|
T Consensus 74 V 74 (74)
T cd05748 74 V 74 (74)
T ss_pred C
Confidence 3
No 42
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.52 E-value=2.5e-13 Score=73.39 Aligned_cols=62 Identities=27% Similarity=0.376 Sum_probs=51.4
Q ss_pred ceeeeeecccCCCCcCCCCccEEEEeeCCE------------EecCCceEEEecCCCCCCEEEEEEEEeCCCCcEEEEEE
Q psy6361 16 IPMHSRYNYTNLPQSRNPGQVIKRYLKDLL------------YVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQM 83 (148)
Q Consensus 16 ~~l~C~~~~~~~p~~~~~~~~~v~W~~~~~------------~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l 83 (148)
..|.|.+.|.|.| .++|+|++. .......|.|.++..+|+|.|.|.+.|..|..+..+.|
T Consensus 1 a~l~C~~~G~P~P--------~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l 72 (75)
T cd05763 1 ARLECAATGHPTP--------QIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATL 72 (75)
T ss_pred CEeEeecccccCC--------EEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEE
Confidence 3689999999999 699999861 12234689999999999999999999999987777777
Q ss_pred EE
Q psy6361 84 NV 85 (148)
Q Consensus 84 ~v 85 (148)
.|
T Consensus 73 ~V 74 (75)
T cd05763 73 TV 74 (75)
T ss_pred EE
Confidence 66
No 43
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.52 E-value=1.2e-13 Score=74.59 Aligned_cols=62 Identities=23% Similarity=0.292 Sum_probs=50.4
Q ss_pred ceeeeeecccCCCCcCCCCccEEEEeeCCEEec----------C---CceEEEecCCCCCCEEEEEEEEeCCCCcEEEEE
Q psy6361 16 IPMHSRYNYTNLPQSRNPGQVIKRYLKDLLYVT----------R---NGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQ 82 (148)
Q Consensus 16 ~~l~C~~~~~~~p~~~~~~~~~v~W~~~~~~~~----------~---~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~ 82 (148)
+.|.|.+.+.|.| .+.|+|++.... . ...|.|.++..+|+|.|+|.+.|..|.....+.
T Consensus 1 v~L~C~v~G~P~P--------~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 72 (75)
T cd05744 1 VRLECRVSAIPPP--------QIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNAR 72 (75)
T ss_pred CEEEEEEeecCCC--------eEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEE
Confidence 5789999999999 699999972111 1 125999999999999999999999998777777
Q ss_pred EEE
Q psy6361 83 MNV 85 (148)
Q Consensus 83 l~v 85 (148)
|.|
T Consensus 73 l~v 75 (75)
T cd05744 73 LDV 75 (75)
T ss_pred EeC
Confidence 653
No 44
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.52 E-value=8.9e-14 Score=76.34 Aligned_cols=69 Identities=22% Similarity=0.283 Sum_probs=56.1
Q ss_pred eeEeeeccceeeeeecccCCCCcCCCCccEEEEeeCCE---------EecCCceEEEecCCCCCCEEEEEEEEeCCCCcE
Q psy6361 8 EQAMLLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDLL---------YVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTS 78 (148)
Q Consensus 8 ~~~~~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~~---------~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~ 78 (148)
..+..|+.+.|.|.+.+.|.| .+.|++++. .......|.|.++..+|+|.|+|.+.|..|...
T Consensus 4 ~~~~~G~~v~L~C~~~g~p~p--------~i~W~k~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~ 75 (82)
T cd05856 4 IARPVGSSVRLKCVASGNPRP--------DITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEIN 75 (82)
T ss_pred eeccCCCeEEEEEEeeEeCCC--------cEEEEECCcCCcCCccceecCceEEEEEccCChhhCEEEEEEEEcCCccEE
Confidence 456789999999999998888 599999871 112235799999999999999999999999876
Q ss_pred EEEEEE
Q psy6361 79 KTIQMN 84 (148)
Q Consensus 79 ~~~~l~ 84 (148)
..+.|.
T Consensus 76 ~~~~v~ 81 (82)
T cd05856 76 ATYKVD 81 (82)
T ss_pred EEEEEe
Confidence 666654
No 45
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.52 E-value=1.7e-13 Score=77.75 Aligned_cols=73 Identities=12% Similarity=0.261 Sum_probs=58.8
Q ss_pred ceeeeEeeeccceeeeeecccCCCCcCCCCccEEEEeeCC--EEe----------------cCCceEEEecCCCCCCEEE
Q psy6361 5 MNVEQAMLLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDL--LYV----------------TRNGSFVINNIAEKDTNVY 66 (148)
Q Consensus 5 ~~~~~~~~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~--~~~----------------~~~~~l~i~~~~~~d~g~y 66 (148)
+....+..|+.+.|.|.+.+.|.| .+.|+|.. ... .....|.|.++..+|+|.|
T Consensus 8 ~~~~~~~~G~~v~l~C~~~G~P~p--------~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y 79 (98)
T cd05870 8 LKNETTVENGAATLSCKAEGEPIP--------EITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRY 79 (98)
T ss_pred eccEEEcCCCcEEEEEecccCCCC--------eEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEE
Confidence 345778899999999999999988 69999942 110 0134799999999999999
Q ss_pred EEEEEeCCCCcEEEEEEEE
Q psy6361 67 TCTVSNAAGSTSKTIQMNV 85 (148)
Q Consensus 67 ~C~~~~~~~~~~~~~~l~v 85 (148)
+|.|.|..|.....+.|.|
T Consensus 80 ~C~A~N~~G~~~~~~~l~~ 98 (98)
T cd05870 80 DCEAASRIGGHQKSMYLDI 98 (98)
T ss_pred EEEEeccCCcceeEEEEeC
Confidence 9999999998777776653
No 46
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.52 E-value=1.5e-13 Score=72.98 Aligned_cols=61 Identities=18% Similarity=0.297 Sum_probs=49.0
Q ss_pred ceeeeeecccCCCCcCCCCccEEEEeeCCEEe------cCCceEEEecCCCCCCEEEEEEEEeCCCCcEEEEEEE
Q psy6361 16 IPMHSRYNYTNLPQSRNPGQVIKRYLKDLLYV------TRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMN 84 (148)
Q Consensus 16 ~~l~C~~~~~~~p~~~~~~~~~v~W~~~~~~~------~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~ 84 (148)
+.|.|.+.|.|.| .+.|+|++... .....|.|.++..+|+|.|+|.+.|..|.......+.
T Consensus 1 ~~~~c~v~G~P~P--------~v~W~k~g~~l~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~ 67 (70)
T cd05864 1 VKIPVKYYGYPPP--------EVKWYKNGQLIVLNHTFKRGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQ 67 (70)
T ss_pred CEEEeEEEEeCCC--------EEEEEECCEECCCCCEEccCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEE
Confidence 4689999999999 69999998322 2345799999999999999999999998755444443
No 47
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.52 E-value=2.3e-13 Score=76.34 Aligned_cols=70 Identities=13% Similarity=0.199 Sum_probs=58.4
Q ss_pred eeeeEeeeccceeeeeecccCCCCcCCCCccEEEEeeCCEEe-----------cCCceEEEecCCCCCCEEEEEEEEeCC
Q psy6361 6 NVEQAMLLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDLLYV-----------TRNGSFVINNIAEKDTNVYTCTVSNAA 74 (148)
Q Consensus 6 ~~~~~~~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~~~~-----------~~~~~l~i~~~~~~d~g~y~C~~~~~~ 74 (148)
.+..+..|+.+.|.|.+.+.|.| .+.|+|++... .....|.|.++..+|+|.|.|.+.|..
T Consensus 11 ~~~~~~~G~~~~L~C~~~g~P~p--------~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~ 82 (92)
T cd05747 11 RSLTVSEGESARFSCDVDGEPAP--------TVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENSE 82 (92)
T ss_pred ccEEEeCCCcEEEEEEEeecCCC--------EEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcCC
Confidence 46789999999999999999998 69999997211 123579999999999999999999999
Q ss_pred CCcEEEEEE
Q psy6361 75 GSTSKTIQM 83 (148)
Q Consensus 75 ~~~~~~~~l 83 (148)
|.....+.|
T Consensus 83 G~~~~~~~l 91 (92)
T cd05747 83 GKQEAQFTL 91 (92)
T ss_pred CCEeEEEEe
Confidence 987666554
No 48
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.51 E-value=2.8e-13 Score=76.43 Aligned_cols=72 Identities=15% Similarity=0.211 Sum_probs=56.1
Q ss_pred eeeEeeeccceeeeeecccCCCCcCCCCccEEEEee-CCEE----------ecC---CceEEEecCCCCCCEEEEEEEEe
Q psy6361 7 VEQAMLLDLIPMHSRYNYTNLPQSRNPGQVIKRYLK-DLLY----------VTR---NGSFVINNIAEKDTNVYTCTVSN 72 (148)
Q Consensus 7 ~~~~~~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~-~~~~----------~~~---~~~l~i~~~~~~d~g~y~C~~~~ 72 (148)
...+..|+.+.|.|.+.+.|.|. .+.|++ ++.. ... ...|.|.++..+|+|.|+|.|.|
T Consensus 9 ~~~v~~G~~v~l~C~v~G~P~~p-------~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N 81 (96)
T cd05865 9 QGEISVGESKFFLCQVAGEAKDK-------DISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSN 81 (96)
T ss_pred ccEECCCCeEEEEEEEeCCCCCC-------EEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEc
Confidence 34688899999999999998532 699998 5511 011 24799999999999999999999
Q ss_pred CC-CCcEEEEEEEE
Q psy6361 73 AA-GSTSKTIQMNV 85 (148)
Q Consensus 73 ~~-~~~~~~~~l~v 85 (148)
.+ +....++.|.|
T Consensus 82 ~~~g~~~~s~~l~v 95 (96)
T cd05865 82 EDEGESEATVNVKI 95 (96)
T ss_pred CCCCcEEEEEEEEE
Confidence 97 66777777665
No 49
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.50 E-value=1.9e-13 Score=76.65 Aligned_cols=74 Identities=16% Similarity=0.205 Sum_probs=59.4
Q ss_pred CcceeeeEeeeccceeeeeecccCCCCcCCCCccEEEEeeCCEE----------ecC--CceEEEecCCCCCCEEEEEEE
Q psy6361 3 GTMNVEQAMLLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDLLY----------VTR--NGSFVINNIAEKDTNVYTCTV 70 (148)
Q Consensus 3 ~~~~~~~~~~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~~~----------~~~--~~~l~i~~~~~~d~g~y~C~~ 70 (148)
+......+..|+.+.|.|.+.+.|.| .+.|++++.. ... ...|.|.++..+|+|.|+|.+
T Consensus 6 ~~p~~v~v~eG~~v~L~C~v~g~P~p--------~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a 77 (92)
T cd05891 6 GLPDVVTIMEGKTLNLTCTVFGNPDP--------EVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINV 77 (92)
T ss_pred cCCCcEEEcCCCEEEEEEEEEEeCCC--------eEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEE
Confidence 44566789999999999999998888 6999999711 111 137899999999999999999
Q ss_pred EeCCCCcEEEEEEE
Q psy6361 71 SNAAGSTSKTIQMN 84 (148)
Q Consensus 71 ~~~~~~~~~~~~l~ 84 (148)
.|..|.....+.|.
T Consensus 78 ~N~~G~~~~~~~v~ 91 (92)
T cd05891 78 KNKYGGETVDVTVS 91 (92)
T ss_pred EeCCCceeeEEEEE
Confidence 99999877666554
No 50
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.50 E-value=3.4e-13 Score=73.20 Aligned_cols=62 Identities=15% Similarity=0.381 Sum_probs=48.5
Q ss_pred ceeeeeecccCCCCcCCCCccEEEEeeCCEE----------ecCCceEEEecCCCCCCEEEEEEEEeCCCCcE--EEEEE
Q psy6361 16 IPMHSRYNYTNLPQSRNPGQVIKRYLKDLLY----------VTRNGSFVINNIAEKDTNVYTCTVSNAAGSTS--KTIQM 83 (148)
Q Consensus 16 ~~l~C~~~~~~~p~~~~~~~~~v~W~~~~~~----------~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~--~~~~l 83 (148)
+.|.|.+.+.|.| .+.|+|++.. ......|.|.++..+|+|.|.|.+.|..|... ..+.|
T Consensus 1 v~L~C~~~g~P~p--------~v~W~k~g~~l~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l 72 (77)
T cd05760 1 VTLRCHIDGHPRP--------TYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTL 72 (77)
T ss_pred CEEEEEeeecCCC--------cEEEEECCEECCCCCccEEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEE
Confidence 5789999999998 5999998721 12345799999999999999999999988743 34444
Q ss_pred EE
Q psy6361 84 NV 85 (148)
Q Consensus 84 ~v 85 (148)
.|
T Consensus 73 ~v 74 (77)
T cd05760 73 SI 74 (77)
T ss_pred EE
Confidence 43
No 51
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.50 E-value=2.3e-13 Score=76.94 Aligned_cols=72 Identities=18% Similarity=0.334 Sum_probs=58.8
Q ss_pred eeeeEeeeccceeeeeecccCCCCcCCCCccEEEEeeCCEEe----------------cCCceEEEecCCCCCCEEEEEE
Q psy6361 6 NVEQAMLLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDLLYV----------------TRNGSFVINNIAEKDTNVYTCT 69 (148)
Q Consensus 6 ~~~~~~~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~~~~----------------~~~~~l~i~~~~~~d~g~y~C~ 69 (148)
....+..|+.+.|.|.+.+.|.| .+.|++++... .....|.|.++..+|+|.|.|.
T Consensus 9 ~~~~~~~g~~v~l~C~~~g~p~p--------~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 80 (96)
T cd05732 9 ENQTAVELEQITLTCEAEGDPIP--------EITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCE 80 (96)
T ss_pred CceeEecCCcEEEEEEEeEcCCC--------cEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEE
Confidence 45778899999999999999888 59999975110 1124799999999999999999
Q ss_pred EEeCCCCcEEEEEEEE
Q psy6361 70 VSNAAGSTSKTIQMNV 85 (148)
Q Consensus 70 ~~~~~~~~~~~~~l~v 85 (148)
+.|..|.....+.|.|
T Consensus 81 a~N~~G~~~~s~~l~v 96 (96)
T cd05732 81 ASNRIGGDQQSMYLEV 96 (96)
T ss_pred EEeCCCCcEEEEEEeC
Confidence 9999998877777653
No 52
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.50 E-value=2.2e-13 Score=77.15 Aligned_cols=70 Identities=21% Similarity=0.327 Sum_probs=56.1
Q ss_pred eeEeeeccceeeeeecccCCCCcCCCCccEEEEeeCCEEe----------------cCCceEEEecCCCCCCEEEEEEEE
Q psy6361 8 EQAMLLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDLLYV----------------TRNGSFVINNIAEKDTNVYTCTVS 71 (148)
Q Consensus 8 ~~~~~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~~~~----------------~~~~~l~i~~~~~~d~g~y~C~~~ 71 (148)
..+..|+.+.|.|.+.|.|.| .++|++++... .....|.|.++..+|+|.|+|.|.
T Consensus 12 ~~~~~g~~v~l~C~~~G~P~P--------~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~ 83 (97)
T cd05869 12 TAMELEEQITLTCEASGDPIP--------SITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCTAS 83 (97)
T ss_pred eEEEcCCCEEEEEEeeEeCCC--------EEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEEEe
Confidence 334457999999999999988 69999976111 011479999999999999999999
Q ss_pred eCCCCcEEEEEEEE
Q psy6361 72 NAAGSTSKTIQMNV 85 (148)
Q Consensus 72 ~~~~~~~~~~~l~v 85 (148)
|..|.....+.|.|
T Consensus 84 N~~G~~~~~~~l~v 97 (97)
T cd05869 84 NTIGQDSQSMYLEV 97 (97)
T ss_pred cCCCCeeEEEEEEC
Confidence 99999887777754
No 53
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.50 E-value=2.2e-13 Score=76.08 Aligned_cols=73 Identities=18% Similarity=0.284 Sum_probs=61.6
Q ss_pred ceeeeEeeeccceeeeeecccCCCCcCCCCccEEEEeeCC-----------EEecCCceEEEecCCCCCCEEEEEEEEeC
Q psy6361 5 MNVEQAMLLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDL-----------LYVTRNGSFVINNIAEKDTNVYTCTVSNA 73 (148)
Q Consensus 5 ~~~~~~~~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~-----------~~~~~~~~l~i~~~~~~d~g~y~C~~~~~ 73 (148)
.....+..|+.+.|.|.+.+.|.| .+.|++++ ........|.|.++..+|+|.|+|.+.|.
T Consensus 7 ~~~~~v~~G~~~~l~c~~~~~p~~--------~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~ 78 (90)
T PF07679_consen 7 PKDVTVKEGESVTLECEVSGNPPP--------TVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNS 78 (90)
T ss_dssp SSEEEEETTSEEEEEEEEEESSSS--------EEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEET
T ss_pred cCCEEEeCCCEEEEEEEEEeCCCC--------cccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEEC
Confidence 457789999999999999999877 69999997 22234678999999999999999999999
Q ss_pred CCCcEEEEEEEE
Q psy6361 74 AGSTSKTIQMNV 85 (148)
Q Consensus 74 ~~~~~~~~~l~v 85 (148)
.+.....+.|.|
T Consensus 79 ~g~~~~~~~l~V 90 (90)
T PF07679_consen 79 SGEATASVNLTV 90 (90)
T ss_dssp TEEEEEEEEEEE
T ss_pred CCEEEEEEEEEC
Confidence 888777777654
No 54
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.50 E-value=3.4e-13 Score=72.61 Aligned_cols=65 Identities=25% Similarity=0.343 Sum_probs=52.6
Q ss_pred eccceeeeeecccCCCCcCCCCccEEEEeeC-C--------EEecCCceEEEecCCCCCCEEEEEEEEeCCCCcEEEEEE
Q psy6361 13 LDLIPMHSRYNYTNLPQSRNPGQVIKRYLKD-L--------LYVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQM 83 (148)
Q Consensus 13 g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~-~--------~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l 83 (148)
|+.+.|.|.+.+.|.| .+.|++. + ........|.|..+..+|+|.|+|.+.|..|..+..+.|
T Consensus 1 G~~~~l~C~~~g~P~p--------~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 72 (74)
T cd05764 1 GQRATLRCKARGDPEP--------AIHWISPDGKLISNSSRTLVYDNGTLDILITTVKDTGSFTCIASNAAGEATATVEL 72 (74)
T ss_pred CCeEEEEEEccCcCCC--------EEEEEeCCCEEecCCCeEEEecCCEEEEEECChhhCEEEEEEEECCCCeEEEEEEE
Confidence 6789999999999888 6999974 4 122345679999999999999999999999987776666
Q ss_pred EE
Q psy6361 84 NV 85 (148)
Q Consensus 84 ~v 85 (148)
.|
T Consensus 73 ~v 74 (74)
T cd05764 73 HI 74 (74)
T ss_pred EC
Confidence 53
No 55
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.50 E-value=6.7e-13 Score=73.51 Aligned_cols=71 Identities=17% Similarity=0.298 Sum_probs=55.8
Q ss_pred eeeeEeeeccceeeeee-cccCCCCcCCCCccEEEEeeCCE---------EecCCceEEEecCCCCCCEEEEEEEEeCCC
Q psy6361 6 NVEQAMLLDLIPMHSRY-NYTNLPQSRNPGQVIKRYLKDLL---------YVTRNGSFVINNIAEKDTNVYTCTVSNAAG 75 (148)
Q Consensus 6 ~~~~~~~g~~~~l~C~~-~~~~~p~~~~~~~~~v~W~~~~~---------~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~ 75 (148)
....+..|+.+.|.|.+ .+.|.| .+.|+|++. .......|.|.++..+|+|.|+|.+.|..|
T Consensus 4 ~~~~~~~G~~v~l~C~~~~g~p~p--------~i~W~k~g~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G 75 (86)
T cd05724 4 SDTQVAVGEMAVLECSPPRGHPEP--------TVSWRKDGQPLNLDNERVRIVDDGNLLIAEARKSDEGTYKCVATNMVG 75 (86)
T ss_pred ccEEEeCCCCEEEEEECCCCCCCC--------EEEEEECCEECCCCCCCEEEccCCEEEEeECCcccCEEEEEEEEeccC
Confidence 45678899999999998 677777 699999871 222356899999999999999999999988
Q ss_pred C-cEEEEEEE
Q psy6361 76 S-TSKTIQMN 84 (148)
Q Consensus 76 ~-~~~~~~l~ 84 (148)
. .+..+.|.
T Consensus 76 ~~~s~~~~l~ 85 (86)
T cd05724 76 ERESAAARLS 85 (86)
T ss_pred ceeeeeEEEE
Confidence 7 34444443
No 56
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.49 E-value=2.9e-13 Score=74.14 Aligned_cols=65 Identities=28% Similarity=0.405 Sum_probs=52.9
Q ss_pred eccceeeeeecccCCCCcCCCCccEEEEeeCC-----E-----------EecCCceEEEecCCCCCCEEEEEEEEeCCCC
Q psy6361 13 LDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDL-----L-----------YVTRNGSFVINNIAEKDTNVYTCTVSNAAGS 76 (148)
Q Consensus 13 g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~-----~-----------~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 76 (148)
|+.+.|.|.+.+.|.| .+.|+|++ . .......|.|.++..+|+|.|+|.+.|..|.
T Consensus 1 G~~v~l~C~~~g~P~p--------~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~ 72 (81)
T cd05765 1 GETASFHCDVTGRPPP--------EITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGL 72 (81)
T ss_pred CCcEEEEeeccccCCC--------cEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCce
Confidence 6789999999999988 59999973 0 1122357999999999999999999999998
Q ss_pred cEEEEEEEE
Q psy6361 77 TSKTIQMNV 85 (148)
Q Consensus 77 ~~~~~~l~v 85 (148)
....+.|.|
T Consensus 73 ~~~~~~l~v 81 (81)
T cd05765 73 LRANFPLSV 81 (81)
T ss_pred EEEEEEEeC
Confidence 777776654
No 57
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.49 E-value=3.6e-13 Score=75.73 Aligned_cols=71 Identities=15% Similarity=0.139 Sum_probs=56.6
Q ss_pred eeeEeeeccceeeeeecc-----cCCCCcCCCCccEEEEeeCCE-----------EecCCceEEEecCCCCCCEEEEEEE
Q psy6361 7 VEQAMLLDLIPMHSRYNY-----TNLPQSRNPGQVIKRYLKDLL-----------YVTRNGSFVINNIAEKDTNVYTCTV 70 (148)
Q Consensus 7 ~~~~~~g~~~~l~C~~~~-----~~~p~~~~~~~~~v~W~~~~~-----------~~~~~~~l~i~~~~~~d~g~y~C~~ 70 (148)
...+..|+.+.|.|.+.+ .|.| .+.|||++. .......|.|.++..+|+|.|.|.+
T Consensus 8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~--------~v~Wyk~~~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~~ 79 (94)
T cd05756 8 KSYVLEGEPVVIKCPLFYSYIAQSPGL--------NLTWYKSDGKTPIPTEERSRMHQQKDLLWFLPAALEDSGLYTCVV 79 (94)
T ss_pred EEEEecCCCeEEECCCCCcccccCCCc--------eEEEEEcCCCCcccccccceeeecCCeEEEccCCcccCeEEEEEE
Confidence 456778999999999998 4555 699999871 1113467999999999999999999
Q ss_pred EeCCCCcEEEEEEEE
Q psy6361 71 SNAAGSTSKTIQMNV 85 (148)
Q Consensus 71 ~~~~~~~~~~~~l~v 85 (148)
.|..+.....+.|.|
T Consensus 80 ~N~~g~~~~~~~L~v 94 (94)
T cd05756 80 RNSTYCMKVSISLTV 94 (94)
T ss_pred cCCCccEEEEEEEEC
Confidence 999988776666653
No 58
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=99.49 E-value=7.2e-13 Score=79.91 Aligned_cols=77 Identities=22% Similarity=0.470 Sum_probs=64.5
Q ss_pred eEEEecCCCCCCEEEEEEEEeCCCCcEEEEEEEEecCCEEEeCCCceEEEecCCcEEEEeeeecc-cC-CeEEEEECCEE
Q psy6361 52 SFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKDEQQESVAIVVNHPMNISCSHYGV-PT-PDFSWYKDGSL 129 (148)
Q Consensus 52 ~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~-p~-~~~~W~~~g~~ 129 (148)
+|.|.+++.+|+|.|.|.+.+..+.....+.|.|..+|.+... +......+|..+.|.|.+.|. |. +.+.|+++|..
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P~v~~~-~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~ 80 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPPRVRLS-LEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPPG 80 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCCceEEe-CCCceeecCCcEEEEEEECCCCCCCeEEEEEECCCC
Confidence 6899999999999999999988777888889999999988766 554455578889999999885 54 48999999854
No 59
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.48 E-value=4.6e-13 Score=73.02 Aligned_cols=69 Identities=20% Similarity=0.292 Sum_probs=54.2
Q ss_pred eeeEeeeccceeeeeecccCCCCcCCCCccEEEEeeCC-------EEecCCceEEEecCCCCCCEEEEEEEEeCCCCcEE
Q psy6361 7 VEQAMLLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDL-------LYVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSK 79 (148)
Q Consensus 7 ~~~~~~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~-------~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~ 79 (148)
...+..|+.+.|.|.+.+. .| .+.|+|++ +.......|.|.++..+|+|.|+|.+.|..+....
T Consensus 3 ~~~~~~G~~v~l~C~~~~~-~~--------~v~W~k~g~~l~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~ 73 (79)
T cd04973 3 SYSAHPGDLLQLRCRLRDD-VQ--------SINWTKDGVQLGENNRTRITGEEVQIKDAVPRDSGLYACVTSSPSGSDTT 73 (79)
T ss_pred cEEecCCCCEEEEEEecCC-Cc--------eEEEeeCCcCCCCCceEEEeCCEEEECCCChhhCEEEEEEEeCCCCcccE
Confidence 4567899999999999885 34 59999998 22223457999999999999999999998877555
Q ss_pred EEEEE
Q psy6361 80 TIQMN 84 (148)
Q Consensus 80 ~~~l~ 84 (148)
.+.+.
T Consensus 74 ~~~v~ 78 (79)
T cd04973 74 YFSVN 78 (79)
T ss_pred EEEEe
Confidence 55443
No 60
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.48 E-value=4.7e-13 Score=71.02 Aligned_cols=61 Identities=16% Similarity=0.227 Sum_probs=48.2
Q ss_pred eccceeeeeecccCCCCcCCCCccEEEEeeCCEEe-------cCCceEEEecCCCCCCEEEEEEEEeCCCCcEEEEEE
Q psy6361 13 LDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDLLYV-------TRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQM 83 (148)
Q Consensus 13 g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~~~~-------~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l 83 (148)
|+.+.|.|.+.|.|.| .+.|+|++... .....|.|.++ .|+|.|+|.|.|..|.......|
T Consensus 1 G~~v~L~C~a~G~P~P--------~v~W~k~g~~l~~~~~~~~~~~~L~i~~~--~d~G~Y~C~A~N~~G~~~~~a~l 68 (69)
T cd05739 1 GGSVNLTCVAVGAPMP--------YVKWMKGGEELTKEDEMPVGRNVLELTNI--YESANYTCVAISSLGMIEATAQV 68 (69)
T ss_pred CCeEEEEEEeeecCCC--------EEEEEECCEECCCccceecCccEEEEecc--ccCeeEEEEEEeCCCEEEEEEEE
Confidence 5789999999999999 69999987222 22346888886 47999999999999976665544
No 61
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.48 E-value=3.7e-13 Score=71.87 Aligned_cols=62 Identities=27% Similarity=0.375 Sum_probs=51.3
Q ss_pred ceeeeeecccCCCCcCCCCccEEEEeeCCE--------EecCCceEEEecCCCCCCEEEEEEEEeCCCCcEEEEEEEE
Q psy6361 16 IPMHSRYNYTNLPQSRNPGQVIKRYLKDLL--------YVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNV 85 (148)
Q Consensus 16 ~~l~C~~~~~~~p~~~~~~~~~v~W~~~~~--------~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v 85 (148)
+.|.|.+.+.|.| .+.|+|++. .......|.|.++..+|+|.|+|.+.|..|..+..+.|.|
T Consensus 1 v~l~C~~~g~P~p--------~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05731 1 LLLECIAEGLPTP--------EISWIKIGGELPADRTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV 70 (71)
T ss_pred CEEEEEeeEecCC--------eEEEEECCeECCCCceeEecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence 4689999999998 599999862 1223468999999999999999999999998777776665
No 62
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.48 E-value=2.5e-13 Score=75.91 Aligned_cols=65 Identities=18% Similarity=0.339 Sum_probs=52.9
Q ss_pred eccceeeeeecccCCCCcCCCCccEEEEeeCC----EE-----------e---------cCCceEEEecCCCCCCEEEEE
Q psy6361 13 LDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDL----LY-----------V---------TRNGSFVINNIAEKDTNVYTC 68 (148)
Q Consensus 13 g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~----~~-----------~---------~~~~~l~i~~~~~~d~g~y~C 68 (148)
|+.+.|.|.+.+.|.| .++|+|++ .. . .....|.|.+++.+|+|.|+|
T Consensus 1 G~~v~l~C~v~g~P~P--------~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C 72 (90)
T cd04974 1 GSDVEFHCKVYSDAQP--------HIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTC 72 (90)
T ss_pred CCcEEEEEEEeCCCCC--------eEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEE
Confidence 5789999999999999 69999852 00 0 112478999999999999999
Q ss_pred EEEeCCCCcEEEEEEEE
Q psy6361 69 TVSNAAGSTSKTIQMNV 85 (148)
Q Consensus 69 ~~~~~~~~~~~~~~l~v 85 (148)
.|.|..|.....+.|.|
T Consensus 73 ~A~N~~G~~~~sa~L~V 89 (90)
T cd04974 73 LAGNSIGPSHHSAWLTV 89 (90)
T ss_pred EeecccCcccCCEEEEe
Confidence 99999998777777776
No 63
>KOG4222|consensus
Probab=99.48 E-value=1.5e-13 Score=102.58 Aligned_cols=114 Identities=20% Similarity=0.402 Sum_probs=101.8
Q ss_pred eeeEeeeccceeeeeecccCCCCcCCCCccEEEEeeCC--------EEecCCceEEEecCCCCCCEEEEEEEEeCCCCcE
Q psy6361 7 VEQAMLLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDL--------LYVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTS 78 (148)
Q Consensus 7 ~~~~~~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~--------~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~ 78 (148)
+..+..|+.+.|.|.+.+.|.| ++.|.|++ ....+..++.|.+++..|.|.|.|.+.|..+...
T Consensus 234 ~~~v~~g~~~~f~c~v~GdP~P--------~Vrwkk~~~~~P~~ry~i~~d~qtl~i~r~tp~deg~y~C~a~n~vG~l~ 305 (1281)
T KOG4222|consen 234 DLAVLVGAAAEFDCRVGGDPQP--------TVRWKKDDPSLPRSRYSILDDTQTLRIDRVTPTDEGTYVCPAENLVGGLE 305 (1281)
T ss_pred cceeecccccccccccCCCCCC--------ceeeeccCCCCCccceeeeeccccccccccCCCcccceeeeccccccccc
Confidence 4567788889999999999999 59999976 3445558999999999999999999999999988
Q ss_pred EEEEEEEecCCEEEeCCCceEEEecCCcEEEEeeeecccCCeEEEEECCEE
Q psy6361 79 KTIQMNVLVPPFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSL 129 (148)
Q Consensus 79 ~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~g~~ 129 (148)
....++|..+|.|... +.+..+.-|..+.|.|.+.|.|.|.+.|.+.|..
T Consensus 306 asa~ltV~apP~f~kk-p~dq~v~lg~~vt~pc~~~gnP~PavfW~keg~q 355 (1281)
T KOG4222|consen 306 ASATLTVQAPPSFGKK-PRDQKVALGGTVTFPCETLGNPPPAVFWLKEGSQ 355 (1281)
T ss_pred cccceEEecCcccccc-cCccccccCceEEeeeecCCCCCcceEEeccCcc
Confidence 8889999999999988 8888888899999999999999999999997754
No 64
>KOG4222|consensus
Probab=99.46 E-value=3e-13 Score=101.08 Aligned_cols=117 Identities=23% Similarity=0.403 Sum_probs=100.2
Q ss_pred eeeEeeeccceeeeeeccc-CCCCcCCCCccEEEEeeCC----------EEecCCceEEEecCCCCCCEEEEEEEEeCCC
Q psy6361 7 VEQAMLLDLIPMHSRYNYT-NLPQSRNPGQVIKRYLKDL----------LYVTRNGSFVINNIAEKDTNVYTCTVSNAAG 75 (148)
Q Consensus 7 ~~~~~~g~~~~l~C~~~~~-~~p~~~~~~~~~v~W~~~~----------~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~ 75 (148)
+.++..|+.+.|+|..-.. +-| .+.|.|+| ........|.|.++...|+|.|.|.+.|.++
T Consensus 140 d~~~a~ge~avlEcgpP~ghpep--------tvSw~Kdg~pl~~~~~~~~~lisgG~LlIsnvrksD~GtY~CVatNmvG 211 (1281)
T KOG4222|consen 140 DVQAAVGEEAVLECGPPRGHPEP--------TVSWVKDGKPLDHYDVPIIALISGGNLLISNVRKSDEGTYACVATNMVG 211 (1281)
T ss_pred cccccccceeEEeccCCCCCCCC--------cceeecCCCccccccceeEEEecCCcEEEeccccCCCceeeeeeccccc
Confidence 4788889999999985433 333 69999997 3345677899999999999999999999998
Q ss_pred C-cEEEEEEEEecCCEEEeCCCceEEEecCCcEEEEeeeecccCCeEEEEECCEEeec
Q psy6361 76 S-TSKTIQMNVLVPPFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRI 132 (148)
Q Consensus 76 ~-~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~g~~l~~ 132 (148)
. .+....|.|.++|.|... +....+..|..+.+.|.+.|.|.|.+.|.|++..+..
T Consensus 212 ~ReS~~A~lsv~e~P~f~~r-p~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk~~~~~P~ 268 (1281)
T KOG4222|consen 212 ERESIPARLSVQEKPWFWKR-PKDLAVLVGAAAEFDCRVGGDPQPTVRWKKDDPSLPR 268 (1281)
T ss_pred ccccccceeeeccCCccccc-cccceeecccccccccccCCCCCCceeeeccCCCCCc
Confidence 7 666789999999999988 8899999999999999999999999999997777653
No 65
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.45 E-value=4.1e-13 Score=72.88 Aligned_cols=60 Identities=10% Similarity=0.161 Sum_probs=50.5
Q ss_pred eeeeEeeeccceeeeeecccCCCCcCCCCccEEEEeeCCEEe-cCCceEEEecCCCCCCEEEEEEEEeC
Q psy6361 6 NVEQAMLLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDLLYV-TRNGSFVINNIAEKDTNVYTCTVSNA 73 (148)
Q Consensus 6 ~~~~~~~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~~~ 73 (148)
....+..|+.+.|.|.+.+.+.+. .+.|+|++... .....|.|.++ .+|+|.|+|.+.+.
T Consensus 8 ~~~~v~~G~~V~L~C~~~~~p~~~-------~~~W~kng~~l~~~~~~l~i~~~-~~dsG~Y~C~a~~~ 68 (78)
T cd05752 8 PWTTIFQGEKVTLTCNGFNSPEQN-------STQWYHNGKLLETTTNSYRIRAA-NNDSGEYRCQTQGS 68 (78)
T ss_pred CCeEeeCCCCEEEEEeCCCCCCCc-------cEEEEECCEEeeccCCeEEEeec-ccCCEEeEEECCCC
Confidence 346788999999999999887654 69999999544 56778999999 99999999999875
No 66
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.45 E-value=1.3e-12 Score=70.36 Aligned_cols=62 Identities=29% Similarity=0.420 Sum_probs=49.7
Q ss_pred ceeeeeecccCCCCcCCCCccEEEEeeCCE----------EecCCceEEEecCCCCCCEEEEEEEEeCCCC-cEEEEEEE
Q psy6361 16 IPMHSRYNYTNLPQSRNPGQVIKRYLKDLL----------YVTRNGSFVINNIAEKDTNVYTCTVSNAAGS-TSKTIQMN 84 (148)
Q Consensus 16 ~~l~C~~~~~~~p~~~~~~~~~v~W~~~~~----------~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~-~~~~~~l~ 84 (148)
+.|.|.+.|.|.| .+.|+|++. .......|.|.++..+|+|.|.|.+.|..|. .+..+.|.
T Consensus 1 a~l~C~~~G~P~p--------~v~W~k~~~~~~~~~~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~ 72 (74)
T cd05738 1 ATMLCAASGNPDP--------EITWFKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNSAGTRYSAPANLY 72 (74)
T ss_pred CEEEEEEeEecCC--------EEEEEECCEECccCCCCCEEEcCCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEE
Confidence 3689999999998 699999862 1223567999999999999999999999987 45555555
Q ss_pred E
Q psy6361 85 V 85 (148)
Q Consensus 85 v 85 (148)
|
T Consensus 73 v 73 (74)
T cd05738 73 V 73 (74)
T ss_pred E
Confidence 4
No 67
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.45 E-value=1.3e-12 Score=71.49 Aligned_cols=59 Identities=19% Similarity=0.231 Sum_probs=48.0
Q ss_pred eeeeecccCCCCcCCCCccEEEEeeCCEEec------------------CCceEEEecCCCCCCEEEEEEEEeCCCCcEE
Q psy6361 18 MHSRYNYTNLPQSRNPGQVIKRYLKDLLYVT------------------RNGSFVINNIAEKDTNVYTCTVSNAAGSTSK 79 (148)
Q Consensus 18 l~C~~~~~~~p~~~~~~~~~v~W~~~~~~~~------------------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~ 79 (148)
+.|.+.|.|.| .++|+|++.... ....|.|.++..+|+|.|+|.|.|..|..+.
T Consensus 3 i~~~v~G~P~P--------~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~ 74 (81)
T cd04971 3 IPFTVRGNPKP--------TLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSK 74 (81)
T ss_pred EEEEeEeeCCC--------cEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeee
Confidence 68999999999 599999982111 1236999999999999999999999998777
Q ss_pred EEEEE
Q psy6361 80 TIQMN 84 (148)
Q Consensus 80 ~~~l~ 84 (148)
.+.++
T Consensus 75 ~~~~~ 79 (81)
T cd04971 75 SISAH 79 (81)
T ss_pred EEEee
Confidence 66654
No 68
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.44 E-value=1.4e-12 Score=72.96 Aligned_cols=72 Identities=13% Similarity=0.167 Sum_probs=55.2
Q ss_pred ceeeeEeeeccceeeeeecccCCCCcCCCCccEEEEeeC-CE--------EecCC---ceEEEecCCCCCCEEEEEEEEe
Q psy6361 5 MNVEQAMLLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKD-LL--------YVTRN---GSFVINNIAEKDTNVYTCTVSN 72 (148)
Q Consensus 5 ~~~~~~~~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~-~~--------~~~~~---~~l~i~~~~~~d~g~y~C~~~~ 72 (148)
.....+..|+.+.|.|.+.|.|. .+.|+++ +. ....+ ..|.|.++..+|+|.|+|.|.|
T Consensus 7 ~~~~~v~~G~~v~l~C~~~G~P~---------~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N 77 (92)
T cd05866 7 LSKVELSVGESKFFTCTAIGEPE---------SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATD 77 (92)
T ss_pred ecceEEcCCCeEEEEEEEEEeCC---------eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEc
Confidence 34567899999999999999775 3899985 31 11111 3799999999999999999999
Q ss_pred CCCC-cEEEEEEEE
Q psy6361 73 AAGS-TSKTIQMNV 85 (148)
Q Consensus 73 ~~~~-~~~~~~l~v 85 (148)
..|. ....+.|.+
T Consensus 78 ~~G~~~~~~i~l~~ 91 (92)
T cd05866 78 AKGQTQEATVVLEI 91 (92)
T ss_pred CCCcEEEEEEEEEE
Confidence 9887 455555554
No 69
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.44 E-value=2.1e-12 Score=74.65 Aligned_cols=70 Identities=20% Similarity=0.193 Sum_probs=57.4
Q ss_pred eeccceeeeeecccCCCCcCCCCccEEEEeeCCEEec----------------CCceEEEecCC-CCCCEEEEEEEEeCC
Q psy6361 12 LLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDLLYVT----------------RNGSFVINNIA-EKDTNVYTCTVSNAA 74 (148)
Q Consensus 12 ~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~~~~~----------------~~~~l~i~~~~-~~d~g~y~C~~~~~~ 74 (148)
.|..+.|.|.+.+.|.| .+.|+|++.... ....|.|.++. .+|.|.|+|.|.|..
T Consensus 22 ~g~~v~L~C~a~G~P~p--------~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~ 93 (109)
T cd05773 22 GSSDANLVCQAQGVPRV--------QFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSL 93 (109)
T ss_pred CCCEEEEEEECcccCCC--------EEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCC
Confidence 56789999999998887 699999972111 02468899987 589999999999999
Q ss_pred CCcEEEEEEEEecCC
Q psy6361 75 GSTSKTIQMNVLVPP 89 (148)
Q Consensus 75 ~~~~~~~~l~v~~~p 89 (148)
|.....+.|.+..+|
T Consensus 94 G~~~~~i~L~~~~~p 108 (109)
T cd05773 94 GEDSLDIQLVSTSRP 108 (109)
T ss_pred ccCcEEEEEEecCCC
Confidence 998888888887766
No 70
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.44 E-value=7.2e-13 Score=72.09 Aligned_cols=60 Identities=18% Similarity=0.251 Sum_probs=48.6
Q ss_pred eccceeeeeecccCCCCcCCCCccEEEEeeCCEE---------e--cCCceEEEecCCCCCCEEEEEEEEeCCCCcEEE
Q psy6361 13 LDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDLLY---------V--TRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKT 80 (148)
Q Consensus 13 g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~~~---------~--~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~ 80 (148)
|+.+.|.|.+.+.|.| .+.|++++.. . .....|.|.++..+|+|.|+|.+.|..|.....
T Consensus 1 G~~v~l~C~~~g~P~p--------~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~ 71 (78)
T cd05743 1 GETVEFTCVATGVPTP--------IINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGI 71 (78)
T ss_pred CCEEEEEEEEEEecCC--------EEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEec
Confidence 6789999999999988 6999998611 1 123579999999999999999999998875443
No 71
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.43 E-value=1.6e-12 Score=69.29 Aligned_cols=58 Identities=24% Similarity=0.308 Sum_probs=46.2
Q ss_pred ceeeeeecccCCCCcCCCCccEEEEeeCCE--------EecCCceEEEecCCCCCCEEEEEEEEeCCCCcEEEE
Q psy6361 16 IPMHSRYNYTNLPQSRNPGQVIKRYLKDLL--------YVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTI 81 (148)
Q Consensus 16 ~~l~C~~~~~~~p~~~~~~~~~v~W~~~~~--------~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~ 81 (148)
+.|.|.+.|.|.| .+.|+|++. .......|.|.++..+|+|.|+|.+.+.........
T Consensus 1 ~~l~c~v~g~P~P--------~v~W~kdg~~l~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~ 66 (72)
T cd07702 1 YRLTPKVKAFPAP--------EVIWLKDGLPAAEKCSRYHVDGYSLVIKDVTEEDAGIYTILLGIKQYNLFKNL 66 (72)
T ss_pred CeEEeeEEEcCCC--------eEEEEECCEECCCCCcEEEeCCCEEEECcCCHHHCEEEEEEEEccccceEeeE
Confidence 4689999999999 699999972 222345899999999999999999999765544433
No 72
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.42 E-value=1.7e-12 Score=72.52 Aligned_cols=65 Identities=18% Similarity=0.293 Sum_probs=52.9
Q ss_pred eccceeeeeecccCCCCcCCCCccEEEEeeCC----E----------Ee-c---------CCceEEEecCCCCCCEEEEE
Q psy6361 13 LDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDL----L----------YV-T---------RNGSFVINNIAEKDTNVYTC 68 (148)
Q Consensus 13 g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~----~----------~~-~---------~~~~l~i~~~~~~d~g~y~C 68 (148)
|+.+.|.|.+.+.|.| .+.|+|++ . .. . ....|.|.+++.+|+|.|+|
T Consensus 1 G~~v~L~C~~~g~P~P--------~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C 72 (90)
T cd05858 1 GSTVEFVCKVYSDAQP--------HIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTC 72 (90)
T ss_pred CCeEEEEEEEecCCCC--------EEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEE
Confidence 6789999999999998 69999841 0 00 0 01479999999999999999
Q ss_pred EEEeCCCCcEEEEEEEE
Q psy6361 69 TVSNAAGSTSKTIQMNV 85 (148)
Q Consensus 69 ~~~~~~~~~~~~~~l~v 85 (148)
.|.|..|.....+.|.|
T Consensus 73 ~A~N~~G~~~~~a~L~V 89 (90)
T cd05858 73 LAGNSIGISHHSAWLTV 89 (90)
T ss_pred EEEeCCCcccceEEEEE
Confidence 99999999888877776
No 73
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.42 E-value=3.6e-12 Score=71.91 Aligned_cols=71 Identities=23% Similarity=0.321 Sum_probs=53.8
Q ss_pred eeeeEeeeccceeeeeecccCCCCcCCCCccEEEEeeCCEEe----------cCCceEEEecC-----CCCCCEEEEEEE
Q psy6361 6 NVEQAMLLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDLLYV----------TRNGSFVINNI-----AEKDTNVYTCTV 70 (148)
Q Consensus 6 ~~~~~~~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~~~~----------~~~~~l~i~~~-----~~~d~g~y~C~~ 70 (148)
.+..+..|+.+.|.|.+.+.|.| .+.|+|++... ..+..+.|.++ ...|+|.|.|.+
T Consensus 7 ~~~~~~~g~~v~l~C~v~g~P~p--------~i~W~k~g~~l~~~~~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a 78 (95)
T cd05722 7 SDIVAVRGGPVVLNCSAEGEPPP--------KIEWKKDGVLLNLVSDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVA 78 (95)
T ss_pred CCeEEcCCCCEEEeeecccCCCC--------EEEEEECCeECccccCcceEEccCCeEEEeeeeccCCCCCcCEEEEEEE
Confidence 34567789999999999999987 69999987211 22345667665 578999999999
Q ss_pred EeC-CCCc-EEEEEEE
Q psy6361 71 SNA-AGST-SKTIQMN 84 (148)
Q Consensus 71 ~~~-~~~~-~~~~~l~ 84 (148)
.|. .|.. +..+.|.
T Consensus 79 ~N~~~G~~~s~~~~l~ 94 (95)
T cd05722 79 QNDSLGSIVSRTARLT 94 (95)
T ss_pred ECCccCcEEEeeeEEe
Confidence 999 8873 5555554
No 74
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.41 E-value=1.4e-12 Score=70.66 Aligned_cols=59 Identities=14% Similarity=0.260 Sum_probs=48.0
Q ss_pred eeeeecccCCCCcCCCCccEEEEeeCCEEe----------------cCCceEEEecCCCCCCEEEEEEEEeCCCCcEEEE
Q psy6361 18 MHSRYNYTNLPQSRNPGQVIKRYLKDLLYV----------------TRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTI 81 (148)
Q Consensus 18 l~C~~~~~~~p~~~~~~~~~v~W~~~~~~~----------------~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~ 81 (148)
+.|.+.|.|.| +++|+|++... .....|.|.++..+|+|.|+|.|.|..|....++
T Consensus 3 i~~~v~G~P~P--------ti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~ 74 (79)
T cd05855 3 IPFTVKGNPKP--------TLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNV 74 (79)
T ss_pred EEEEEeEeCCC--------ceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEE
Confidence 67999999999 69999998211 1224789999999999999999999999877766
Q ss_pred EEE
Q psy6361 82 QMN 84 (148)
Q Consensus 82 ~l~ 84 (148)
.++
T Consensus 75 ~~~ 77 (79)
T cd05855 75 SAH 77 (79)
T ss_pred Eee
Confidence 554
No 75
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.41 E-value=2.3e-12 Score=72.56 Aligned_cols=58 Identities=22% Similarity=0.354 Sum_probs=47.3
Q ss_pred eeccceeeeeecccCCCCcCCCCccEEEEeeCCEE---------ecCCceEEEecCC-CCCCEEEEEEEEeCCCCc
Q psy6361 12 LLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDLLY---------VTRNGSFVINNIA-EKDTNVYTCTVSNAAGST 77 (148)
Q Consensus 12 ~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~~~---------~~~~~~l~i~~~~-~~d~g~y~C~~~~~~~~~ 77 (148)
.|+.+.|.|.+.|.|.| .++|+|++.. ...+..|.|.++. .+|+|.|+|.|.|..|..
T Consensus 18 ~g~~v~l~C~~~G~P~P--------~i~W~k~g~~l~~~~~~~~~~~~g~L~i~~~~~~~D~G~Y~C~A~N~~G~~ 85 (94)
T cd05848 18 DEKKVILNCEARGNPVP--------TYRWLRNGTEIDTESDYRYSLIDGNLIISNPSEVKDSGRYQCLATNSIGSI 85 (94)
T ss_pred CCCEEEEEEEeeecCCC--------EEEEEECCeECccCCCceEEeeCCeEEEccCCccCcCEEEEEEEEcCCCeE
Confidence 46889999999999998 6999999721 2234578888874 699999999999999873
No 76
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.40 E-value=4.3e-12 Score=71.43 Aligned_cols=64 Identities=20% Similarity=0.314 Sum_probs=48.8
Q ss_pred eeccceeeeeecccCCCCcCCCCccEEEEeeCCEEe---------cCCceEEEecCC-CCCCEEEEEEEEeCCCCc-EEE
Q psy6361 12 LLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDLLYV---------TRNGSFVINNIA-EKDTNVYTCTVSNAAGST-SKT 80 (148)
Q Consensus 12 ~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~~~~---------~~~~~l~i~~~~-~~d~g~y~C~~~~~~~~~-~~~ 80 (148)
.|+.+.|.|.+.+.|.| .++|++++... .....|.|.++. .+|+|.|.|.|.|..|.. +..
T Consensus 18 ~g~~v~l~C~a~g~P~p--------~i~W~~~g~~l~~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~ 89 (94)
T cd05850 18 PEEKVTLGCRARASPPA--------TYRWKMNGTEIKFAPESRYTLVAGNLVINNPQKARDAGSYQCLAINRCGTVVSRE 89 (94)
T ss_pred CCCeEEEEeEceeCCCC--------EEEEEECCEECccCCCceEEEECCeEEEccCCccCcCEEEEEEEEcCcCcEEEEE
Confidence 35689999999999988 69999998222 224578887765 599999999999999873 334
Q ss_pred EEE
Q psy6361 81 IQM 83 (148)
Q Consensus 81 ~~l 83 (148)
+.|
T Consensus 90 a~l 92 (94)
T cd05850 90 ANL 92 (94)
T ss_pred EEE
Confidence 443
No 77
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.39 E-value=7e-12 Score=67.81 Aligned_cols=62 Identities=24% Similarity=0.367 Sum_probs=51.1
Q ss_pred eeeeeecccCCCCcCCCCccEEEEeeCCEE-----------ecCCceEEEecCCCCCCEEEEEEEEeCCCCcEEEEEEEE
Q psy6361 17 PMHSRYNYTNLPQSRNPGQVIKRYLKDLLY-----------VTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNV 85 (148)
Q Consensus 17 ~l~C~~~~~~~p~~~~~~~~~v~W~~~~~~-----------~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v 85 (148)
.|.|.+.+.|.| .+.|+|++.. ......|.|.++..+|+|.|+|.+.|..|.....+.|.|
T Consensus 2 ~L~C~v~g~P~p--------~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (76)
T cd05736 2 SLRCHAEGIPLP--------RLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFV 73 (76)
T ss_pred EeEeEeeecCCC--------EEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEE
Confidence 589999999888 6999999721 122357999999999999999999999998877777766
Q ss_pred e
Q psy6361 86 L 86 (148)
Q Consensus 86 ~ 86 (148)
.
T Consensus 74 ~ 74 (76)
T cd05736 74 E 74 (76)
T ss_pred E
Confidence 4
No 78
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.39 E-value=3.8e-12 Score=71.46 Aligned_cols=64 Identities=30% Similarity=0.425 Sum_probs=49.4
Q ss_pred eeccceeeeeecccCCCCcCCCCccEEEEeeCCEE--------ecCCceEEEecCC-CCCCEEEEEEEEeCCCCc-EEEE
Q psy6361 12 LLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDLLY--------VTRNGSFVINNIA-EKDTNVYTCTVSNAAGST-SKTI 81 (148)
Q Consensus 12 ~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~~~--------~~~~~~l~i~~~~-~~d~g~y~C~~~~~~~~~-~~~~ 81 (148)
.+..+.|.|.+.|.|.| .++|+|++.. ...+..|.|.++. .+|+|.|.|.|.|..|.. +..+
T Consensus 18 ~~~~v~l~C~a~G~P~P--------~i~W~k~~~~i~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a 89 (93)
T cd05849 18 TEGKVSVNCRARANPFP--------IYKWRKNNLDIDLTNDRYSMVGGNLVINNPDKYKDAGRYVCIVSNIYGKVRSREA 89 (93)
T ss_pred cCCeEEEeCcCccCCCC--------EEEEEECCEEccCCCCeEEEECCEEEECcCCcCCCCEEEEEEEEeCcceEEEccE
Confidence 34579999999999998 6999998722 1234689998885 689999999999999873 3344
Q ss_pred EE
Q psy6361 82 QM 83 (148)
Q Consensus 82 ~l 83 (148)
.|
T Consensus 90 ~l 91 (93)
T cd05849 90 TL 91 (93)
T ss_pred EE
Confidence 43
No 79
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.39 E-value=5.7e-12 Score=68.80 Aligned_cols=63 Identities=10% Similarity=0.069 Sum_probs=51.6
Q ss_pred ceeeeEeeeccceeeeeecccCCCCcCCCCccEEEEeeCCEEe-----cCCceEEEecCCCCCCEEEEEEEEeCCCC
Q psy6361 5 MNVEQAMLLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDLLYV-----TRNGSFVINNIAEKDTNVYTCTVSNAAGS 76 (148)
Q Consensus 5 ~~~~~~~~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~~~~-----~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 76 (148)
..+..+..|+.+.|.|.+.|.|.|. .+.|+|++... .....|.|..+ .|+|.|.|.|+|..|.
T Consensus 5 P~~~~v~~G~~v~l~C~a~G~P~P~-------~I~W~k~g~~l~~~~~~~~s~L~i~~~--~d~g~Y~C~A~N~~G~ 72 (81)
T cd05749 5 PEDLSVTANTPFNLTCQAVGPPEPV-------EILWWQGGSPLGDPPAPSPSVLNVPGL--NETSKFSCEAHNAKGV 72 (81)
T ss_pred CCceEEcCCCCEEEEEEeeeecCCe-------EEEEEECCEECCCCCCCCCCEEEEccc--cCCeEEEEEEEeccCc
Confidence 4467889999999999999999983 49999998433 23457888776 5789999999999986
No 80
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.37 E-value=8.3e-12 Score=70.90 Aligned_cols=72 Identities=19% Similarity=0.265 Sum_probs=53.3
Q ss_pred eeeeEeeeccceeeeeecccCCCCcCCCCccEEEEeeCCEEec-------------CCceEEEec-----CCCCCCEEEE
Q psy6361 6 NVEQAMLLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDLLYVT-------------RNGSFVINN-----IAEKDTNVYT 67 (148)
Q Consensus 6 ~~~~~~~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~~~~~-------------~~~~l~i~~-----~~~~d~g~y~ 67 (148)
....+..|+.+.|.|.+.+.|.| .+.|+|++.... ....+.+.. +..+|+|.|+
T Consensus 9 ~~~~v~~G~~~~l~C~~~g~P~p--------~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~ 80 (100)
T cd07693 9 SDLIVSKGDPATLNCKAEGRPTP--------TIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYV 80 (100)
T ss_pred ceeEEcCCCeEEEEeeCCcCCCC--------EEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEE
Confidence 45678889999999999999988 699999972221 122222222 2689999999
Q ss_pred EEEEeCCCC-cEEEEEEEE
Q psy6361 68 CTVSNAAGS-TSKTIQMNV 85 (148)
Q Consensus 68 C~~~~~~~~-~~~~~~l~v 85 (148)
|.+.|..|. .+..+.|.|
T Consensus 81 C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 81 CVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred EEEEccccceecceEEEEe
Confidence 999999998 666666655
No 81
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.37 E-value=7.5e-12 Score=68.20 Aligned_cols=61 Identities=25% Similarity=0.414 Sum_probs=48.3
Q ss_pred ceeeeeecccCCCCcCCCCccEEEEeeCCE----------------EecCCceEEEecCCCCCCEEEEEEEEeCCCCc-E
Q psy6361 16 IPMHSRYNYTNLPQSRNPGQVIKRYLKDLL----------------YVTRNGSFVINNIAEKDTNVYTCTVSNAAGST-S 78 (148)
Q Consensus 16 ~~l~C~~~~~~~p~~~~~~~~~v~W~~~~~----------------~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~-~ 78 (148)
+.|.|.+.|.|.| .+.|++++. .......|.|.++..+|+|.|.|.+.|..|.. +
T Consensus 1 v~l~C~~~G~P~P--------~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s 72 (79)
T cd05734 1 VTLNCSAEGYPPP--------TIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYLCKVSNDVGADAS 72 (79)
T ss_pred CEeEeeCeEeCCC--------EEEEEECCCccccccccccccCCCEEEecCCeEEECcCCcccCEEEEEEEEeCCCCCCc
Confidence 5789999999998 699999630 11235689999999999999999999998873 5
Q ss_pred EEEEEE
Q psy6361 79 KTIQMN 84 (148)
Q Consensus 79 ~~~~l~ 84 (148)
..+.|+
T Consensus 73 ~~~~l~ 78 (79)
T cd05734 73 KSMVLT 78 (79)
T ss_pred eEEEEe
Confidence 555554
No 82
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.37 E-value=2.8e-12 Score=70.48 Aligned_cols=70 Identities=11% Similarity=0.096 Sum_probs=52.9
Q ss_pred eeEeeeccceeeeeecccCCCCcCCCCccEEEEeeCCEEe---cCCceEEEecCCCCCCEEEEEEEEeCCCC-cEEEEEE
Q psy6361 8 EQAMLLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDLLYV---TRNGSFVINNIAEKDTNVYTCTVSNAAGS-TSKTIQM 83 (148)
Q Consensus 8 ~~~~~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~~~~---~~~~~l~i~~~~~~d~g~y~C~~~~~~~~-~~~~~~l 83 (148)
..+..|+.++|.|.+....... .+.|+|++... .....|.|.+++.+|+|.|+|.+.+..+. .+..+.|
T Consensus 9 ~~V~~G~~vtL~C~~~~~~~~~-------~~~w~k~g~~~~~~~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~s~~~~i 81 (83)
T cd05753 9 RVVFEGEPLVLRCHGWKNKPVY-------KVTYYRDGKAKKYSHSNSNLSIPQATLSDSGSYHCSGIIGSYDYSSEPVSI 81 (83)
T ss_pred ceecCCCCEEEEeeCCCCCcce-------EEEEEECCeEccccCCCceEEECccCHHHCEEEEEEEEeCCceecCCCEEE
Confidence 4688999999999986533322 69999998322 33568999999999999999999998765 3444444
Q ss_pred E
Q psy6361 84 N 84 (148)
Q Consensus 84 ~ 84 (148)
+
T Consensus 82 ~ 82 (83)
T cd05753 82 T 82 (83)
T ss_pred E
Confidence 3
No 83
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.36 E-value=1.4e-11 Score=69.92 Aligned_cols=71 Identities=23% Similarity=0.200 Sum_probs=55.7
Q ss_pred eeeeEeeeccceeeeeecccCCCCcCCCCccEEEEeeCCEEecC-----------------CceEEEecCCCCC-CEEEE
Q psy6361 6 NVEQAMLLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDLLYVTR-----------------NGSFVINNIAEKD-TNVYT 67 (148)
Q Consensus 6 ~~~~~~~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~~~~~~-----------------~~~l~i~~~~~~d-~g~y~ 67 (148)
....+..|+.+.|.|.+.+.|.|. .+.|++++..... ...|.|.++..+| .|.|.
T Consensus 9 ~~~~~~~G~~v~L~C~~~g~P~P~-------~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~ 81 (98)
T cd05758 9 ATQYAILGDKGRVECFIFSTPPPD-------RIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYN 81 (98)
T ss_pred CcEEEeCCCcEEEEEEEcccCCCC-------EeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEE
Confidence 345689999999999999999884 5999998722111 1369999999855 89999
Q ss_pred EEEEeCCCCcEEEEEE
Q psy6361 68 CTVSNAAGSTSKTIQM 83 (148)
Q Consensus 68 C~~~~~~~~~~~~~~l 83 (148)
|.|.|..|.....+.|
T Consensus 82 C~A~N~~G~~~~~~~L 97 (98)
T cd05758 82 CTAWNSFGSGTAIISL 97 (98)
T ss_pred EEEEcCCCcccEEEEe
Confidence 9999999986666554
No 84
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.36 E-value=1e-11 Score=67.38 Aligned_cols=53 Identities=21% Similarity=0.337 Sum_probs=42.8
Q ss_pred ceeeeeecccCCCCcCCCCccEEEEeeCCE-----------EecCCceEEEecCCC----CCCEEEEEEEEeCCCC
Q psy6361 16 IPMHSRYNYTNLPQSRNPGQVIKRYLKDLL-----------YVTRNGSFVINNIAE----KDTNVYTCTVSNAAGS 76 (148)
Q Consensus 16 ~~l~C~~~~~~~p~~~~~~~~~v~W~~~~~-----------~~~~~~~l~i~~~~~----~d~g~y~C~~~~~~~~ 76 (148)
+.|.|.+.|.|.| .++|+|++. .......|.|..+.. +|+|.|.|.|.|..|.
T Consensus 1 i~l~C~~~G~P~P--------~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~ 68 (77)
T cd05733 1 IVIKCEAKGNPPP--------TFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGT 68 (77)
T ss_pred CEEEeeCcccCCC--------eEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCc
Confidence 4789999999998 699999872 123356788888753 6899999999999987
No 85
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.34 E-value=2.2e-11 Score=66.01 Aligned_cols=54 Identities=22% Similarity=0.327 Sum_probs=42.4
Q ss_pred ceeeeeecccCCCCcCCCCccEEEEeeCCEE-----------ecCCceEEEecCCC----CCCEEEEEEEEeCCCCc
Q psy6361 16 IPMHSRYNYTNLPQSRNPGQVIKRYLKDLLY-----------VTRNGSFVINNIAE----KDTNVYTCTVSNAAGST 77 (148)
Q Consensus 16 ~~l~C~~~~~~~p~~~~~~~~~v~W~~~~~~-----------~~~~~~l~i~~~~~----~d~g~y~C~~~~~~~~~ 77 (148)
+.|.|.+.|.|.| +++|+|++.. ......|.|..+.. .|+|.|+|.|.|..|..
T Consensus 1 ~~l~C~a~G~P~P--------~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~ 69 (77)
T cd05874 1 IVIQCEAKGKPPP--------SFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAA 69 (77)
T ss_pred CEEEeeCcccCCC--------eEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeE
Confidence 5789999999999 6999998721 12356788877764 37899999999999873
No 86
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.34 E-value=1.1e-11 Score=66.79 Aligned_cols=58 Identities=22% Similarity=0.292 Sum_probs=45.9
Q ss_pred ceeeeeecc-cCCCCcCCCCccEEEEeeCCEEe--------------cCCceEEEecCCCCCCEEEEEEEEeCCCCcEEE
Q psy6361 16 IPMHSRYNY-TNLPQSRNPGQVIKRYLKDLLYV--------------TRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKT 80 (148)
Q Consensus 16 ~~l~C~~~~-~~~p~~~~~~~~~v~W~~~~~~~--------------~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~ 80 (148)
+.|.|.+.+ .|.| .+.|+|++... .....|.|.++..+|+|.|+|.+.|..|.....
T Consensus 1 ~~l~C~~~g~~P~p--------~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~ 72 (75)
T cd05750 1 LVLKCEATSEYPSL--------RFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVT 72 (75)
T ss_pred CEEEEEccCCCCCc--------eEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEE
Confidence 468999999 7777 69999987111 123578999999999999999999999875544
Q ss_pred E
Q psy6361 81 I 81 (148)
Q Consensus 81 ~ 81 (148)
+
T Consensus 73 ~ 73 (75)
T cd05750 73 A 73 (75)
T ss_pred E
Confidence 3
No 87
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.33 E-value=1.4e-11 Score=67.89 Aligned_cols=66 Identities=11% Similarity=0.140 Sum_probs=50.6
Q ss_pred eccceeeeeecccCCCCcCCCCccEEEEeeCCE-----E-----e--c---CCceEEEecCCCCCCEEEEEEEEeCCC--
Q psy6361 13 LDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDLL-----Y-----V--T---RNGSFVINNIAEKDTNVYTCTVSNAAG-- 75 (148)
Q Consensus 13 g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~~-----~-----~--~---~~~~l~i~~~~~~d~g~y~C~~~~~~~-- 75 (148)
|+.+.|.|.+.+.+.| .+.|++++. . . . ....|.|.+++.+|+|.|.|.+.+...
T Consensus 1 Ge~~~l~C~~~~~~~~--------~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~ 72 (84)
T cd05861 1 GETITVNCIVQGNEVV--------DFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQ 72 (84)
T ss_pred CCcEEEEEEEECCCcc--------EEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCc
Confidence 6889999999998777 699998651 0 0 1 135799999999999999999998765
Q ss_pred CcEEEEEEEEe
Q psy6361 76 STSKTIQMNVL 86 (148)
Q Consensus 76 ~~~~~~~l~v~ 86 (148)
.....+.++|.
T Consensus 73 ~~~~sv~i~V~ 83 (84)
T cd05861 73 KAFKKVNITVH 83 (84)
T ss_pred ceeEEEEEEEe
Confidence 35566666653
No 88
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.33 E-value=1.2e-11 Score=69.34 Aligned_cols=70 Identities=13% Similarity=0.168 Sum_probs=52.7
Q ss_pred eeeeEeeeccceeeeeecccCCCCcCCCCccEEEEeeC-CEE--------e-c---CCceEEEecCCCCCCEEEEEEEEe
Q psy6361 6 NVEQAMLLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKD-LLY--------V-T---RNGSFVINNIAEKDTNVYTCTVSN 72 (148)
Q Consensus 6 ~~~~~~~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~-~~~--------~-~---~~~~l~i~~~~~~d~g~y~C~~~~ 72 (148)
....+..|+.+.|.|.+.+.| + .+.|++. +.. . . ....|.|.+++.+|+|.|+|.+.|
T Consensus 8 ~~~~v~~G~~~~l~C~~~G~p-~--------~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N 78 (92)
T cd04977 8 SQGEISVGESKFFLCQVIGEP-K--------DISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATD 78 (92)
T ss_pred CcEEECCCCeEEEEEEeEeeC-C--------eEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEc
Confidence 346688899999999999874 3 5999984 311 1 1 124799999999999999999999
Q ss_pred CCCC-cEEEEEEE
Q psy6361 73 AAGS-TSKTIQMN 84 (148)
Q Consensus 73 ~~~~-~~~~~~l~ 84 (148)
..+. ...++.|+
T Consensus 79 ~~g~~~~~sv~l~ 91 (92)
T cd04977 79 AKGTESEATVNLK 91 (92)
T ss_pred CCCCcceeEEEEE
Confidence 8654 55555554
No 89
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.33 E-value=7.9e-12 Score=68.93 Aligned_cols=65 Identities=14% Similarity=0.157 Sum_probs=51.0
Q ss_pred eccceeeeeeccc--CCCCcCCCCccEEEEeeCCE------Ee----------cCCceEEEecCCCCCCEEEEEEEEeCC
Q psy6361 13 LDLIPMHSRYNYT--NLPQSRNPGQVIKRYLKDLL------YV----------TRNGSFVINNIAEKDTNVYTCTVSNAA 74 (148)
Q Consensus 13 g~~~~l~C~~~~~--~~p~~~~~~~~~v~W~~~~~------~~----------~~~~~l~i~~~~~~d~g~y~C~~~~~~ 74 (148)
|+.+.|.|.+.+. +.| .+.|++++. .. .....|.|.+++.+|+|.|+|.+.|..
T Consensus 1 Ge~~~L~C~~~g~~~~~~--------~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~ 72 (84)
T cd05742 1 GETLVLNCTVLTELNEGV--------DFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGT 72 (84)
T ss_pred CCeEEEEEEEEeCCCccE--------EEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCC
Confidence 6789999999999 555 699987651 00 123479999999999999999999999
Q ss_pred CCcEEEEEEEE
Q psy6361 75 GSTSKTIQMNV 85 (148)
Q Consensus 75 ~~~~~~~~l~v 85 (148)
+..+....+.|
T Consensus 73 ~~~~~s~~v~v 83 (84)
T cd05742 73 MDQKESTKVNI 83 (84)
T ss_pred CceEEEEEEEE
Confidence 88776666654
No 90
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.32 E-value=1.7e-11 Score=67.70 Aligned_cols=70 Identities=17% Similarity=0.152 Sum_probs=55.3
Q ss_pred eeeeEeeeccceeeeeecc-cCCCCcCCCCccEEEEeeCC-----EEecCCceEEEecCCCCCCEEEEEEEEeCCCCcEE
Q psy6361 6 NVEQAMLLDLIPMHSRYNY-TNLPQSRNPGQVIKRYLKDL-----LYVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSK 79 (148)
Q Consensus 6 ~~~~~~~g~~~~l~C~~~~-~~~p~~~~~~~~~v~W~~~~-----~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~ 79 (148)
....+..|+.++|.|.+.+ .+.| .+.|++++ ........|.|.++..+|+|.|.|.+.|..+....
T Consensus 9 ~~~~v~~G~~v~L~C~~~~~~~~~--------~i~W~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~ 80 (85)
T cd05754 9 RSQEVRPGADVSFICRAKSKSPAY--------TLVWTRVGGGLPSRAMDFNGILTIRNVQLSDAGTYVCTGSNMLDTDEA 80 (85)
T ss_pred CceEEcCCCCEEEEEEcCCCCCCc--------EEEEEECCCcCCCcccccCCEEEECCCCHHHCEEEEEEEeccCCeEeE
Confidence 3567889999999999875 4554 69999986 22233578999999999999999999999887665
Q ss_pred EEEE
Q psy6361 80 TIQM 83 (148)
Q Consensus 80 ~~~l 83 (148)
.+.|
T Consensus 81 ~~~l 84 (85)
T cd05754 81 TATL 84 (85)
T ss_pred EEEE
Confidence 5443
No 91
>PHA03376 BARF1; Provisional
Probab=99.32 E-value=5.4e-11 Score=73.16 Aligned_cols=114 Identities=14% Similarity=0.225 Sum_probs=73.1
Q ss_pred eeeEeeeccceeeeeecccCCCCcCCCCccEEEEeeC----C------------------------EEecCCceEEEecC
Q psy6361 7 VEQAMLLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKD----L------------------------LYVTRNGSFVINNI 58 (148)
Q Consensus 7 ~~~~~~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~----~------------------------~~~~~~~~l~i~~~ 58 (148)
...+..|+.+.|.|........ ..+.|.|+|. + .....+.+|.|.++
T Consensus 20 pVta~VGEda~LsC~lnp~ssa-----~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l 94 (221)
T PHA03376 20 AVTAFLGERVTLTSYWRRVSLG-----PEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAA 94 (221)
T ss_pred chhheeCCcEEEEecccCccCC-----CceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEee
Confidence 5778999999999998733222 2358999993 2 11134568999999
Q ss_pred CCCCCEEEEEEEEeCCCCcEEEEEEEEecCCEEEeCCCceEEEecCCcEEEEeeeecccCCeEEEEEC
Q psy6361 59 AEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKD 126 (148)
Q Consensus 59 ~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~ 126 (148)
+.+|.|.|+|.++.........-.|.+-.+...... ........-+...+.|.+.|.|.|.++|.-+
T Consensus 95 ~lSDdGtY~C~fQkge~~~~k~ehLt~V~~~~Lsv~-a~~~dFp~~~~~~i~C~sggfP~P~~~Wle~ 161 (221)
T PHA03376 95 NISHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVH-SERSQFPDFSVLTVTCTVNAFPHPHVQWLMP 161 (221)
T ss_pred eecCCceEEEEEEcCCCceeeeeeeeeeecceEEEE-eccccCCCCCeeEEEEecCCcCCchheeccc
Confidence 999999999998865533333333333221111111 1001111135578899988999999999854
No 92
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.32 E-value=1.9e-11 Score=68.76 Aligned_cols=61 Identities=11% Similarity=0.140 Sum_probs=49.4
Q ss_pred ceeeeEeeeccceeeeeecccCCCCcCCCCccEEEEeeCCE---------------Ee---c--CCceEEEecCCCCCCE
Q psy6361 5 MNVEQAMLLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDLL---------------YV---T--RNGSFVINNIAEKDTN 64 (148)
Q Consensus 5 ~~~~~~~~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~~---------------~~---~--~~~~l~i~~~~~~d~g 64 (148)
..+..+..|+.+.|.|.+.+.+.| .+.|++++. .. . ....|.|.++..+|+|
T Consensus 4 ~~~~tv~~G~tv~L~C~v~g~~~~--------~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G 75 (95)
T cd05882 4 TQDETVAVGGTVTLKCGVKEHDNS--------SLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEG 75 (95)
T ss_pred cccEEEecCCcEEEEEEEeCCCCC--------eEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCE
Confidence 346789999999999999998887 699988641 00 1 1358999999999999
Q ss_pred EEEEEEEeC
Q psy6361 65 VYTCTVSNA 73 (148)
Q Consensus 65 ~y~C~~~~~ 73 (148)
.|+|.+...
T Consensus 76 ~YtC~~~t~ 84 (95)
T cd05882 76 EYTCSIFTM 84 (95)
T ss_pred EEEEEEEee
Confidence 999998873
No 93
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.31 E-value=4.5e-11 Score=64.76 Aligned_cols=54 Identities=20% Similarity=0.331 Sum_probs=42.3
Q ss_pred ceeeeeecccCCCCcCCCCccEEEEeeCCE-----------EecCCceEEEecCC----CCCCEEEEEEEEeCCCCc
Q psy6361 16 IPMHSRYNYTNLPQSRNPGQVIKRYLKDLL-----------YVTRNGSFVINNIA----EKDTNVYTCTVSNAAGST 77 (148)
Q Consensus 16 ~~l~C~~~~~~~p~~~~~~~~~v~W~~~~~-----------~~~~~~~l~i~~~~----~~d~g~y~C~~~~~~~~~ 77 (148)
+.|.|.+.|.|.| .++|+|++. .......|.|..+. .+|+|.|.|.|.|..|..
T Consensus 1 ~~l~C~~~G~P~P--------~v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~ 69 (77)
T cd05875 1 IIIECEAKGNPVP--------TFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTA 69 (77)
T ss_pred CEEEEeccccCCC--------EEEEEECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceE
Confidence 4689999999999 699999872 11245678888764 246999999999999873
No 94
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.30 E-value=5.2e-11 Score=66.34 Aligned_cols=72 Identities=21% Similarity=0.235 Sum_probs=53.6
Q ss_pred eeeeEeeeccceeeeeecccCCCCcCCCCccEEEEeeCCE-----------EecCCceEEEecCCCCCCEEEEEEEEeCC
Q psy6361 6 NVEQAMLLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDLL-----------YVTRNGSFVINNIAEKDTNVYTCTVSNAA 74 (148)
Q Consensus 6 ~~~~~~~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~~-----------~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 74 (148)
....+..|+.+.|.|.+.+ +.+ .+.|++++. .......|.|.++..+|+|.|.|.+.+..
T Consensus 4 ~~~~v~~g~~v~L~C~~~~-p~~--------~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~ 74 (89)
T cd04979 4 KVVTVVEGNSVFLECSPKS-NLA--------SVVWLFQGGPLQRKEEPEERLLVTEDGLLIRSVSPADAGVYTCQSVEHG 74 (89)
T ss_pred eEEEEECCCcEEEEEeCCC-CCc--------eEEEEECCcccccccCcCceEEEcCCCEEEccCCHHHCEEEEEEEecCc
Confidence 4567889999999999876 555 699999871 12223568999999999999999998765
Q ss_pred CC-cEEEEEEEEe
Q psy6361 75 GS-TSKTIQMNVL 86 (148)
Q Consensus 75 ~~-~~~~~~l~v~ 86 (148)
+. ......|.|.
T Consensus 75 ~~~~~~~~~l~V~ 87 (89)
T cd04979 75 FKQTLATYSLNVL 87 (89)
T ss_pred cceeEeEEEEEEe
Confidence 43 4555555553
No 95
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.30 E-value=4.4e-11 Score=65.90 Aligned_cols=69 Identities=19% Similarity=0.296 Sum_probs=54.5
Q ss_pred eeEeeeccceeeeeecccCCCCcCCCCccEEEEeeCCEEe------------cCCceEEEecCCCCCCEEEEEEEEeCCC
Q psy6361 8 EQAMLLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDLLYV------------TRNGSFVINNIAEKDTNVYTCTVSNAAG 75 (148)
Q Consensus 8 ~~~~~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~~~~------------~~~~~l~i~~~~~~d~g~y~C~~~~~~~ 75 (148)
..+..|+.+.|.|.+.+.+.| .+.|++++... .....|.|.++..+|+|.|.|.+.|..+
T Consensus 4 ~~~~~G~~~~l~C~~~~~p~~--------~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g 75 (85)
T cd05729 4 HAVPAGSTVRLKCPASGNPRP--------TITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYG 75 (85)
T ss_pred eEecCCCcEEEEEEcCCCCCC--------eEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCc
Confidence 456689999999999988777 69999997211 1123688999999999999999999988
Q ss_pred CcEEEEEEE
Q psy6361 76 STSKTIQMN 84 (148)
Q Consensus 76 ~~~~~~~l~ 84 (148)
.....+.|.
T Consensus 76 ~~~~~~~l~ 84 (85)
T cd05729 76 SINHTYKVD 84 (85)
T ss_pred eEEEEEEEe
Confidence 766666654
No 96
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.28 E-value=9.8e-11 Score=65.50 Aligned_cols=74 Identities=14% Similarity=0.132 Sum_probs=53.7
Q ss_pred eeeeEeeeccceeeeeecccCCCCcCCCCccEEEEeeCCEEe-------cCCceEEEecCCCCCCEEEEEEEEeCCCCcE
Q psy6361 6 NVEQAMLLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDLLYV-------TRNGSFVINNIAEKDTNVYTCTVSNAAGSTS 78 (148)
Q Consensus 6 ~~~~~~~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~~~~-------~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~ 78 (148)
..+.+..|....|.|...+..... ++. +.+.|+|++... .....|.|.++..+|+|.|+|.+.+..+...
T Consensus 3 ~~~~~~~g~~~~l~Cp~~~~~~~~--~~~-p~i~Wyk~~~~i~~~~~~~~~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~ 79 (92)
T cd05757 3 YKQILFSTKGGKIVCPDLDDFKNE--NTL-PPVQWYKDCKLLEGDRKRFVKGSKLLIQNVTEEDAGNYTCKLTFTHNGKQ 79 (92)
T ss_pred ceEEEeeccCCEEECCChHHccCC--CCC-CcEEEeECCEECCCCccEEecCCEEEEeeCChhhCEEEEEEEEecCCCEE
Confidence 456788999999999976543110 011 169999998221 1567899999999999999999999877644
Q ss_pred EEEE
Q psy6361 79 KTIQ 82 (148)
Q Consensus 79 ~~~~ 82 (148)
..+.
T Consensus 80 ~~~t 83 (92)
T cd05757 80 YNVT 83 (92)
T ss_pred EEEE
Confidence 4433
No 97
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.26 E-value=5.3e-11 Score=64.33 Aligned_cols=58 Identities=17% Similarity=0.228 Sum_probs=43.9
Q ss_pred ceeeeeeccc-CCCCcCCCCccEEEEeeCCEEec---------------CCceEEEecCCCCCCEEEEEEEEeCCCCcEE
Q psy6361 16 IPMHSRYNYT-NLPQSRNPGQVIKRYLKDLLYVT---------------RNGSFVINNIAEKDTNVYTCTVSNAAGSTSK 79 (148)
Q Consensus 16 ~~l~C~~~~~-~~p~~~~~~~~~v~W~~~~~~~~---------------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~ 79 (148)
+.|.|.+.+. |.| .+.|++++.... ....|.|.++..+|+|.|.|.+.|..+..+.
T Consensus 1 ~~L~C~a~~~~p~~--------~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~ 72 (76)
T cd05895 1 LVLRCETVSEYPSL--------RFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSV 72 (76)
T ss_pred CEEEEecccCCCCC--------ceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeE
Confidence 4689998754 444 699999872111 2356999999999999999999999987655
Q ss_pred EE
Q psy6361 80 TI 81 (148)
Q Consensus 80 ~~ 81 (148)
.+
T Consensus 73 ~~ 74 (76)
T cd05895 73 TA 74 (76)
T ss_pred EE
Confidence 43
No 98
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.25 E-value=7.3e-11 Score=66.49 Aligned_cols=71 Identities=10% Similarity=0.071 Sum_probs=53.1
Q ss_pred ceeeeEeeeccceeeeeecccCCCCcCCCCccEEEEeeC--------C-------EEe-----cCCceEEEecCCCCCCE
Q psy6361 5 MNVEQAMLLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKD--------L-------LYV-----TRNGSFVINNIAEKDTN 64 (148)
Q Consensus 5 ~~~~~~~~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~--------~-------~~~-----~~~~~l~i~~~~~~d~g 64 (148)
.....+..|+.+.|.|.+.+.+.| .+.|++. + +.. .....|.|.++..+|+|
T Consensus 4 ~~~v~v~eG~~v~L~C~~~~~p~~--------~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG 75 (95)
T cd07701 4 TQNVTVVEGGTANLTCRVDQNDNT--------SLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEG 75 (95)
T ss_pred cceEEEecCCcEEEEEEEecCCce--------EEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCE
Confidence 346788999999999999998877 6999862 1 111 12357999999999999
Q ss_pred EEEEEEEeCCCCcEEEEEEE
Q psy6361 65 VYTCTVSNAAGSTSKTIQMN 84 (148)
Q Consensus 65 ~y~C~~~~~~~~~~~~~~l~ 84 (148)
.|.|.+.+.... +....|+
T Consensus 76 ~Y~C~~~t~~~~-~~~~~l~ 94 (95)
T cd07701 76 QYTCSLFTMPVK-TSKAYLT 94 (95)
T ss_pred EEEEEeEeecCc-cEEEEEE
Confidence 999999875433 4444554
No 99
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=99.23 E-value=2.2e-10 Score=63.99 Aligned_cols=73 Identities=14% Similarity=0.209 Sum_probs=53.7
Q ss_pred ceeeeEeeeccceeeeeecccCCCCcCCCCccEEEEeeCC-------------EEecCCceEEEecCCCCCCEEEEEEEE
Q psy6361 5 MNVEQAMLLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDL-------------LYVTRNGSFVINNIAEKDTNVYTCTVS 71 (148)
Q Consensus 5 ~~~~~~~~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~-------------~~~~~~~~l~i~~~~~~d~g~y~C~~~ 71 (148)
.....+..|+.+.|.|... .|.| .+.||+++ +.......|.|.++..+|+|.|.|.+.
T Consensus 3 ~~~~~~~eG~~v~L~C~~~-~p~p--------~v~Wykq~~g~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~a~ 73 (91)
T cd05871 3 EKVVYGVENNSTFLECLPK-SPQA--------SVKWLFQRGGDQRKEEVKTEERLIHTERGLLLRSLQRSDAGVYTCTAV 73 (91)
T ss_pred ceEEEEecCCcEEEEEECC-CCCc--------eEEEEEECCCCCccccccccccEEEecCeEEEeeCChhHCEEEEEEEE
Confidence 3456788999999999964 5666 69999832 222234579999999999999999997
Q ss_pred e-CCCCcEEEEEEEEe
Q psy6361 72 N-AAGSTSKTIQMNVL 86 (148)
Q Consensus 72 ~-~~~~~~~~~~l~v~ 86 (148)
+ ..+.....+.|+|.
T Consensus 74 ~~~~~~~~~~~~l~v~ 89 (91)
T cd05871 74 EHSFSQTLAKYTLHVI 89 (91)
T ss_pred ccCCeEEEEEEEEEEe
Confidence 4 54445556666664
No 100
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.20 E-value=1.1e-10 Score=65.32 Aligned_cols=58 Identities=26% Similarity=0.365 Sum_probs=45.9
Q ss_pred eeeccceeeeeecccCCCCcCCCCccEEEEeeCCEEe---------cCCceEEEecCC-CCCCEEEEEEEEeCCCC
Q psy6361 11 MLLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDLLYV---------TRNGSFVINNIA-EKDTNVYTCTVSNAAGS 76 (148)
Q Consensus 11 ~~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~~~~---------~~~~~l~i~~~~-~~d~g~y~C~~~~~~~~ 76 (148)
..+..+.|.|.+.+.|.| .++|++++... .....|.|.++. .+|+|.|+|.+.|..|.
T Consensus 17 ~~~~~~~l~C~~~g~p~p--------~i~W~k~~~~l~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~G~ 84 (91)
T cd04967 17 SDEGKVSLNCRARGSPPP--------TYRWLMNGTEIDDEPDSRYSLVGGNLVISNPSKAKDAGRYQCLASNIVGT 84 (91)
T ss_pred CCCCEEEEEEeeeEcCCC--------EEEEEECCEECCCCCCCCEEEECCEEEEecCCccCCCEEEEEEEEcCCCE
Confidence 344678999999998888 69999987322 123578888876 48999999999999886
No 101
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.19 E-value=1.3e-10 Score=64.06 Aligned_cols=60 Identities=18% Similarity=0.177 Sum_probs=47.7
Q ss_pred eeeeEeeeccceeeeeecccCCCCcCCCCccEEEEeeCCE--------EecCCceEEEecCCCCCCEEEEEEEEeCC
Q psy6361 6 NVEQAMLLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDLL--------YVTRNGSFVINNIAEKDTNVYTCTVSNAA 74 (148)
Q Consensus 6 ~~~~~~~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~~--------~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 74 (148)
.+..+..|+++.|.|.+.+ +.| .+.|++++. .......|.|.+++.+|+|.|+|.+....
T Consensus 4 ~~~~v~~G~~v~L~C~~~~-~~~--------~i~W~~ng~~i~~~~~r~~~~~~~L~I~nv~~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 4 RQRTFKLGNNAELKCSPKS-NLA--------RVVWKFDGKVLTPESAKYLLYRDGLLIFNASEADAGRYQCLSVEKS 71 (87)
T ss_pred ceEEEECCCCEEEEEECCC-CCC--------eEEEEECCEECCCCCceEEEECCcEEEeCCCHHHCEEEEEEEEecc
Confidence 3567889999999999754 344 699999972 23334679999999999999999998753
No 102
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=99.17 E-value=2.8e-10 Score=64.16 Aligned_cols=78 Identities=12% Similarity=0.205 Sum_probs=53.7
Q ss_pred eeeeEeeeccceeeeeecccC----CCCcCCCCccEEEEeeCC--------------EEecCCceEEEecCCCCCCEEEE
Q psy6361 6 NVEQAMLLDLIPMHSRYNYTN----LPQSRNPGQVIKRYLKDL--------------LYVTRNGSFVINNIAEKDTNVYT 67 (148)
Q Consensus 6 ~~~~~~~g~~~~l~C~~~~~~----~p~~~~~~~~~v~W~~~~--------------~~~~~~~~l~i~~~~~~d~g~y~ 67 (148)
..-++..|+.+.|.|..-... -+...+++ +.+.|+|++ +.......|.|.++..+|+|.|+
T Consensus 8 ~~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~-~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~ 86 (104)
T cd05896 8 KKYMVLAGEPVRIKCALFYGYIRTNYSMAQSAG-LSLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSGLYT 86 (104)
T ss_pred eeEEEcCCCeEEEECCCccccccccccccccCC-ceEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCChhhCeEEE
Confidence 346789999999999973211 01011111 269999994 12234678999999999999999
Q ss_pred EEEEeCCCCcEEEEEEE
Q psy6361 68 CTVSNAAGSTSKTIQMN 84 (148)
Q Consensus 68 C~~~~~~~~~~~~~~l~ 84 (148)
|.+.|+.......+.|+
T Consensus 87 C~~rN~t~C~~~~i~l~ 103 (104)
T cd05896 87 CVLRNSTYCMKVSMSLT 103 (104)
T ss_pred EEECCCCcceEEEEEEE
Confidence 99999776555555444
No 103
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=99.15 E-value=6.1e-10 Score=62.78 Aligned_cols=71 Identities=11% Similarity=0.106 Sum_probs=51.7
Q ss_pred ceeeeEeeeccceeeeeecccCCCCcCCCCccEEEEeeCC---------------EEe-----cCCceEEEecCCCCCCE
Q psy6361 5 MNVEQAMLLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDL---------------LYV-----TRNGSFVINNIAEKDTN 64 (148)
Q Consensus 5 ~~~~~~~~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~---------------~~~-----~~~~~l~i~~~~~~d~g 64 (148)
.....+..|+.+.|.|.+.+.+.+ .+.|++.+ +.. .....|.|.+++.+|+|
T Consensus 4 ~~~~~v~~G~~v~L~C~~~~~~~~--------~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG 75 (95)
T cd05717 4 TQDVTVVEGGTATLKCRVKNNDNS--------SLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEG 75 (95)
T ss_pred CCcEEEcCCCCEEEEEEECCCCCc--------eEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCE
Confidence 456788999999999999887666 59997521 110 12347999999999999
Q ss_pred EEEEEEEeCCCCcEEEEEEE
Q psy6361 65 VYTCTVSNAAGSTSKTIQMN 84 (148)
Q Consensus 65 ~y~C~~~~~~~~~~~~~~l~ 84 (148)
.|+|.+.+... ....+.|+
T Consensus 76 ~Y~C~~~~~~~-~~~~~~~~ 94 (95)
T cd05717 76 RYTCSLYTMPV-QTAKATVT 94 (95)
T ss_pred EEEEEEecCCC-ceEEEEEE
Confidence 99999887653 24444444
No 104
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=99.14 E-value=5.4e-10 Score=57.57 Aligned_cols=55 Identities=20% Similarity=0.306 Sum_probs=44.7
Q ss_pred eeccceeeeeecccCCCCcCCCCccEEEEeeCCE-------EecCCceEEEecCCCCCCEEEEEEEEeCC
Q psy6361 12 LLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDLL-------YVTRNGSFVINNIAEKDTNVYTCTVSNAA 74 (148)
Q Consensus 12 ~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~~-------~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 74 (148)
.|+.+.|.|.+.+.+.+ .+.|++++. .......|.|.++...|+|.|+|.+.+..
T Consensus 1 ~g~~~~l~C~~~~~~~~--------~v~W~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~ 62 (63)
T smart00408 1 EGQSVTLTCPAEGDPVP--------NITWLKDGKPLPESNRLSASGSTLTIKSVSLEDSGEYTCVAENSA 62 (63)
T ss_pred CCceEEEEeeCccCCCC--------eEEEEECCEECCCCCEEecCCcEEEEeeCCcccCEEEEEEEecCC
Confidence 37789999998777666 699999872 23456689999999999999999998764
No 105
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=99.14 E-value=4.5e-10 Score=62.13 Aligned_cols=68 Identities=15% Similarity=0.077 Sum_probs=51.0
Q ss_pred eccceeeeeecccCCCCcCCCCccEEEEeeCCEE------e-----------cCCceEEEecCCCCCCEEEEEEEEeCCC
Q psy6361 13 LDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDLLY------V-----------TRNGSFVINNIAEKDTNVYTCTVSNAAG 75 (148)
Q Consensus 13 g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~~~------~-----------~~~~~l~i~~~~~~d~g~y~C~~~~~~~ 75 (148)
|+.+.|.|.+.+.+.+. ..+.|..++.. . .....|.|.++..+|+|.|+|.+.|..+
T Consensus 1 Ge~~~L~C~~~~~~~~~------~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~ 74 (86)
T cd05862 1 GEKLVLNCTARTELNVG------IDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQM 74 (86)
T ss_pred CCcEEEEEEEEeCCCCc------EEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecce
Confidence 67899999998765442 26899876510 0 1234799999999999999999999887
Q ss_pred CcEEEEEEEEe
Q psy6361 76 STSKTIQMNVL 86 (148)
Q Consensus 76 ~~~~~~~l~v~ 86 (148)
.......|.|.
T Consensus 75 ~~~~~t~~~V~ 85 (86)
T cd05862 75 IAKNSTIVIVH 85 (86)
T ss_pred EecccEEEEEe
Confidence 76666666654
No 106
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=99.12 E-value=7.1e-10 Score=60.21 Aligned_cols=71 Identities=23% Similarity=0.352 Sum_probs=53.5
Q ss_pred eeeEeeeccceeeeeecccCCCCcCCCCccEEEEeeCCEEec-CCceEEEecCCCCCCEEEEEEEEeCCCC-cEEEEEEE
Q psy6361 7 VEQAMLLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDLLYVT-RNGSFVINNIAEKDTNVYTCTVSNAAGS-TSKTIQMN 84 (148)
Q Consensus 7 ~~~~~~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~~~~~~-~~~~~~l~ 84 (148)
...+..|+.+.|.|.+.+.+.+ .+.|++++.... ....+.+.++..+|+|.|+|.+.+..+. .+..+.|+
T Consensus 8 ~~~v~~g~~~~l~C~~~~~p~~--------~~~w~~~~~~~~~~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~v~ 79 (80)
T PF13895_consen 8 PQSVEEGDSVTLTCSVSGNPPP--------QVQWYKNGSPINSSQNGLFIPNVSPEDSGNYTCRASNGSGSNTSTSVNVT 79 (80)
T ss_dssp SSEEETTSEEEEEEEEESSSSS--------EEEEEETTEEEEEESSEEEESSEEGGGTEEEEEEEEETTEEEEEEEEEEE
T ss_pred ceEEeCCCcEEEEEEEEcccce--------eeeeeeeeeeeeeeeeeeeeeeeccccCEEEEEEEEeCCCCeEeeeEEee
Confidence 3568889999999999977665 699999883333 2333778889999999999999986543 44555554
Q ss_pred E
Q psy6361 85 V 85 (148)
Q Consensus 85 v 85 (148)
|
T Consensus 80 V 80 (80)
T PF13895_consen 80 V 80 (80)
T ss_dssp E
T ss_pred C
Confidence 3
No 107
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.11 E-value=5.6e-10 Score=62.54 Aligned_cols=63 Identities=16% Similarity=0.127 Sum_probs=49.5
Q ss_pred eeeeEeeeccceeeeeeccc-CCCCcCCCCccEEEEeeCC----------E-EecCCceEEEecCCCCCCEEEEEEEEeC
Q psy6361 6 NVEQAMLLDLIPMHSRYNYT-NLPQSRNPGQVIKRYLKDL----------L-YVTRNGSFVINNIAEKDTNVYTCTVSNA 73 (148)
Q Consensus 6 ~~~~~~~g~~~~l~C~~~~~-~~p~~~~~~~~~v~W~~~~----------~-~~~~~~~l~i~~~~~~d~g~y~C~~~~~ 73 (148)
....+..|+.+.|.|..-.. |.| .+.|++++ + ....++.|.|.++..+|+|.|+|.|+|.
T Consensus 11 ~~~~v~eG~~~~L~C~pP~g~P~p--------~~~W~k~~~~~~~~~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~ 82 (96)
T cd05727 11 DEVKVKEGWGVVLFCDPPPHYPDL--------SYRWLLNEFPNFIPEDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSSP 82 (96)
T ss_pred CceeeeeCCcEEEeeCCCCCCCCC--------EEEEEECCcccccccCCCeEEeCCCCcEEEeecCHhhCceeEEEEEec
Confidence 45678889999999975444 444 79999996 1 1223689999999999999999999997
Q ss_pred CCC
Q psy6361 74 AGS 76 (148)
Q Consensus 74 ~~~ 76 (148)
...
T Consensus 83 ~~~ 85 (96)
T cd05727 83 SST 85 (96)
T ss_pred ccC
Confidence 654
No 108
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.11 E-value=1.7e-09 Score=60.97 Aligned_cols=71 Identities=25% Similarity=0.224 Sum_probs=56.1
Q ss_pred eeeeEeeeccceeeeeecccCCCCcCCCCccEEEEeeCCE-------------Ee----cCCceEEEecCCCCC-CEEEE
Q psy6361 6 NVEQAMLLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDLL-------------YV----TRNGSFVINNIAEKD-TNVYT 67 (148)
Q Consensus 6 ~~~~~~~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~~-------------~~----~~~~~l~i~~~~~~d-~g~y~ 67 (148)
..+.+..|+.+.|.|.+.+.|.|. .+.|...+. .. .....|.|.++...| .|.|.
T Consensus 9 ~s~~~~~G~~~~L~C~~~s~P~P~-------~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~ 81 (98)
T cd05898 9 QVQYAVRGERGKVKCFIGSTPPPD-------RIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYN 81 (98)
T ss_pred ceEEEeCCCcEEEEEEEccCCCCc-------EEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEE
Confidence 357788999999999999999886 788877641 11 123579999998777 68999
Q ss_pred EEEEeCCCCcEEEEEE
Q psy6361 68 CTVSNAAGSTSKTIQM 83 (148)
Q Consensus 68 C~~~~~~~~~~~~~~l 83 (148)
|.|.|..|.....+.|
T Consensus 82 C~a~N~~G~d~~~i~L 97 (98)
T cd05898 82 CTAWNSFGSGTAIIQL 97 (98)
T ss_pred EEEEeCCccceEEEEe
Confidence 9999999987776655
No 109
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=99.06 E-value=5.6e-10 Score=62.55 Aligned_cols=60 Identities=12% Similarity=0.117 Sum_probs=46.7
Q ss_pred eeEeeeccceeeeeecccCCCCcCCCCccEEEEeeCC-E------------------------E---ecCCceEEEecCC
Q psy6361 8 EQAMLLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDL-L------------------------Y---VTRNGSFVINNIA 59 (148)
Q Consensus 8 ~~~~~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~-~------------------------~---~~~~~~l~i~~~~ 59 (148)
..+..|+.++|.|.+.+.+.+ .+.|++++ . . ......|.|.++.
T Consensus 2 v~~~~G~~VtL~C~~s~~~~~--------~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~ 73 (94)
T cd07690 2 VLGKKGDTAELPCTASQKKSI--------QFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLK 73 (94)
T ss_pred eEeeCCCCEEEEEEeCCCCCc--------EEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCC
Confidence 468899999999999887766 69998443 0 0 1122469999999
Q ss_pred CCCCEEEEEEEEeCCC
Q psy6361 60 EKDTNVYTCTVSNAAG 75 (148)
Q Consensus 60 ~~d~g~y~C~~~~~~~ 75 (148)
.+|+|.|+|.+.+...
T Consensus 74 ~sDsgtY~C~v~~~~~ 89 (94)
T cd07690 74 IEDSDTYICEVEDKKE 89 (94)
T ss_pred HHHCEEEEEEECCccc
Confidence 9999999999887554
No 110
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=99.05 E-value=1e-09 Score=57.20 Aligned_cols=51 Identities=22% Similarity=0.296 Sum_probs=37.6
Q ss_pred eccceeeeeecccCCCCcCCCCccEEEEeeCC---------EEecCCce----EEEecCCCCCCEEEEEEE
Q psy6361 13 LDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDL---------LYVTRNGS----FVINNIAEKDTNVYTCTV 70 (148)
Q Consensus 13 g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~---------~~~~~~~~----l~i~~~~~~d~g~y~C~~ 70 (148)
|+.+.|.|.+...+.+. .+.|++++ ........ |.|.+++.+|+|.|+|.+
T Consensus 1 G~~v~L~C~~~~~~~~~-------~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPT-------TVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTS-------EEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCc-------EEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 67899999993333333 79999987 11112222 999999999999999985
No 111
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.02 E-value=3e-09 Score=59.52 Aligned_cols=64 Identities=13% Similarity=0.147 Sum_probs=52.5
Q ss_pred ceeeeEeeeccceeeee-ecccCCCCcCCCCccEEEEeeCC---------EEecCCceEEEecCCCCCCE-EEEEEEEeC
Q psy6361 5 MNVEQAMLLDLIPMHSR-YNYTNLPQSRNPGQVIKRYLKDL---------LYVTRNGSFVINNIAEKDTN-VYTCTVSNA 73 (148)
Q Consensus 5 ~~~~~~~~g~~~~l~C~-~~~~~~p~~~~~~~~~v~W~~~~---------~~~~~~~~l~i~~~~~~d~g-~y~C~~~~~ 73 (148)
.....+..|+.+.|.|. ..+.|.| .+.|++++ .....++.|.|.++..+|+| .|.|.|.+.
T Consensus 10 ~~~v~V~eG~~~~L~C~pP~g~P~P--------~i~W~~~~~~~i~~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~ 81 (95)
T cd05845 10 IRPVEVEEGDSVVLPCNPPKSAVPL--------RIYWMNSDLLHITQDERVSMGQNGNLYFANVEEQDSHPDYICHAHFP 81 (95)
T ss_pred cceeEEecCCCEEEEecCCCCCCCC--------EEEEECCCCccccccccEEECCCceEEEEEEehhhCCCCeEEEEEcc
Confidence 34678889999999997 6888887 69999875 23345689999999999999 799999987
Q ss_pred CCC
Q psy6361 74 AGS 76 (148)
Q Consensus 74 ~~~ 76 (148)
...
T Consensus 82 ~~~ 84 (95)
T cd05845 82 GLR 84 (95)
T ss_pred ccc
Confidence 643
No 112
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=98.99 E-value=6.6e-09 Score=58.46 Aligned_cols=75 Identities=15% Similarity=0.113 Sum_probs=61.2
Q ss_pred ceeeeEeeeccceeeeeecccCCCCcCCCCccEEEEeeCCE---------Eec-------CCceEEEecCCCCCCEEEEE
Q psy6361 5 MNVEQAMLLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDLL---------YVT-------RNGSFVINNIAEKDTNVYTC 68 (148)
Q Consensus 5 ~~~~~~~~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~~---------~~~-------~~~~l~i~~~~~~d~g~y~C 68 (148)
...+.|.+|+++.|.|.+.+.|.|. .+.|.+++. ... ....|.+..++.+|+|.|+|
T Consensus 10 ~~~~~v~~gE~~~L~V~ieAYP~p~-------~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf 82 (101)
T cd05860 10 NTTIFVNAGENLDLIVEYEAYPKPE-------HQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTF 82 (101)
T ss_pred CceEEEECCCCEEEEEEEEeCCCCe-------eeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEE
Confidence 3467899999999999999999995 699998851 111 12578999999999999999
Q ss_pred EEEeCCCCcEEEEEEEEe
Q psy6361 69 TVSNAAGSTSKTIQMNVL 86 (148)
Q Consensus 69 ~~~~~~~~~~~~~~l~v~ 86 (148)
.+.|+....+..+.|.|.
T Consensus 83 ~a~N~~~~~s~tF~l~v~ 100 (101)
T cd05860 83 LVSNSDASASVTFNVYVN 100 (101)
T ss_pred EEECCCCeEEEEEEEEEe
Confidence 999999888877777653
No 113
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.99 E-value=5.8e-09 Score=59.67 Aligned_cols=61 Identities=23% Similarity=0.203 Sum_probs=47.1
Q ss_pred eeeEeeeccceeeeeecccCCCCcCCCCccEEEEeeCC---------------------------EEecCCceEEEecCC
Q psy6361 7 VEQAMLLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDL---------------------------LYVTRNGSFVINNIA 59 (148)
Q Consensus 7 ~~~~~~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~---------------------------~~~~~~~~l~i~~~~ 59 (148)
...|..|+++.|.|....... ..++|||.. .....+.+|.|.+++
T Consensus 7 p~~~~~G~~V~L~v~~~p~~~--------~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~ 78 (105)
T cd05774 7 PPQVAEGENVLLLVHNLPENL--------LAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVT 78 (105)
T ss_pred CCcccCCCCEEEEecCCCCCc--------eEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCC
Confidence 457889999999998753322 279999973 122345689999999
Q ss_pred CCCCEEEEEEEEeCCC
Q psy6361 60 EKDTNVYTCTVSNAAG 75 (148)
Q Consensus 60 ~~d~g~y~C~~~~~~~ 75 (148)
.+|+|.|+|.+.+...
T Consensus 79 ~~D~G~Y~~~v~~~~~ 94 (105)
T cd05774 79 QKDTGFYTLQTITTNF 94 (105)
T ss_pred cccCEEEEEEEEeCCc
Confidence 9999999999988663
No 114
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.99 E-value=8.7e-09 Score=57.75 Aligned_cols=67 Identities=12% Similarity=0.075 Sum_probs=46.7
Q ss_pred eeeEeeeccceeeeeecccCCCCcCCCCccEEEEeeCCEEe----------cCCceEEEecCCCCCCEEEEEEEEeCCCC
Q psy6361 7 VEQAMLLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDLLYV----------TRNGSFVINNIAEKDTNVYTCTVSNAAGS 76 (148)
Q Consensus 7 ~~~~~~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~~~~----------~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 76 (148)
...+..|.+..|.|.-...-.+. ...+.++|||++... .....|.|.++..+|+|.|+|.+.+..+.
T Consensus 4 ~~~~~~~~~~~l~Cp~~~~f~~~---~~~~~v~WYKd~~~l~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g 80 (95)
T cd05897 4 PQILFTSTSGKLVCPDLSDFTIN---RTDVELQWYKDSVLLDKDNEKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTHEG 80 (95)
T ss_pred eeEeccccCcEEECCCHHHcccC---CCCCcEEEccCCEECcCCCcceEecCCCCEEEEEEcChhhCEEEEEEEEEeeCC
Confidence 45677888999999842211000 011269999998322 13458999999999999999999987654
No 115
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=98.97 E-value=7.4e-09 Score=67.22 Aligned_cols=59 Identities=19% Similarity=0.131 Sum_probs=45.9
Q ss_pred eeEeeeccceeeeeecccC-----CCCcCCCCccEEEEeeCCEEe---------cCCceEEEecCCCCCCEEEEEEEEeC
Q psy6361 8 EQAMLLDLIPMHSRYNYTN-----LPQSRNPGQVIKRYLKDLLYV---------TRNGSFVINNIAEKDTNVYTCTVSNA 73 (148)
Q Consensus 8 ~~~~~g~~~~l~C~~~~~~-----~p~~~~~~~~~v~W~~~~~~~---------~~~~~l~i~~~~~~d~g~y~C~~~~~ 73 (148)
..+..|+.+.|.|.+.+.+ .| +++|+|++... .....|.|.+++.+|+|.|+|.+...
T Consensus 139 ~~~~~G~~v~L~C~~~~~~~~~~p~p--------~I~WyKng~~l~~~~r~~~~~~~~~L~I~~V~~~DsG~YtC~a~~~ 210 (227)
T PHA02826 139 YQFNSGKDSKLHCYGTDGISSTFKDY--------TLTWYKNGNIVLYTDRIQLRNNNSTLVIKSATHDDSGIYTCNLRFN 210 (227)
T ss_pred ceEecCCCEEEEeeCCCCccccCCCc--------eEEEEECCEECCCCCCEEEeCCCCEEEECcCCHHhCEEEEEEEEEe
Confidence 3556799999999986442 34 79999998322 23457999999999999999999875
Q ss_pred C
Q psy6361 74 A 74 (148)
Q Consensus 74 ~ 74 (148)
.
T Consensus 211 ~ 211 (227)
T PHA02826 211 K 211 (227)
T ss_pred E
Confidence 3
No 116
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=98.96 E-value=5e-09 Score=56.74 Aligned_cols=54 Identities=11% Similarity=0.138 Sum_probs=42.6
Q ss_pred ceeeeeecccCCCCcCCCCccEEEEeeCCEEec-------------CCceEEEecCCCCCCEEEEEEEEeCCCC
Q psy6361 16 IPMHSRYNYTNLPQSRNPGQVIKRYLKDLLYVT-------------RNGSFVINNIAEKDTNVYTCTVSNAAGS 76 (148)
Q Consensus 16 ~~l~C~~~~~~~p~~~~~~~~~v~W~~~~~~~~-------------~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 76 (148)
+.|.|...+..+|. .++||+++.... ....|.+.....+|.+.|+|+|.|.++.
T Consensus 2 ~~L~C~s~~skP~a-------~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~ 68 (80)
T cd05885 2 VELTCLSPRSKPAA-------TLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALV 68 (80)
T ss_pred EEEEEeCCCccCCC-------eEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhC
Confidence 57899999887765 899999982221 1236888888889999999999998765
No 117
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.95 E-value=9.1e-09 Score=57.52 Aligned_cols=56 Identities=21% Similarity=0.299 Sum_probs=42.9
Q ss_pred eccceeeeeecccCCCCcCCCCccEEEEeeCC--------------------------EEecCCceEEEecCCCCCCEEE
Q psy6361 13 LDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDL--------------------------LYVTRNGSFVINNIAEKDTNVY 66 (148)
Q Consensus 13 g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~--------------------------~~~~~~~~l~i~~~~~~d~g~y 66 (148)
|++|+|.|........ .+.|++.. .....+.+|.|.+++.+|+|.|
T Consensus 1 G~~VtL~c~~~~~~~~--------~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~~DsG~Y 72 (92)
T cd05741 1 GESVTLPVSNLPENLQ--------EITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKEDSGTY 72 (92)
T ss_pred CCcEEEEcccCCCCCE--------EEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCchhcEEE
Confidence 6889999988763333 68998864 1122447899999999999999
Q ss_pred EEEEEeCCCC
Q psy6361 67 TCTVSNAAGS 76 (148)
Q Consensus 67 ~C~~~~~~~~ 76 (148)
+|.+....+.
T Consensus 73 ~c~v~~~~~~ 82 (92)
T cd05741 73 TLQIISTNGV 82 (92)
T ss_pred EEEEEcCCCc
Confidence 9998876643
No 118
>smart00409 IG Immunoglobulin.
Probab=98.94 E-value=2.9e-08 Score=54.02 Aligned_cols=71 Identities=21% Similarity=0.328 Sum_probs=53.6
Q ss_pred eeeEeeeccceeeeeecccCCCCcCCCCccEEEEeeC-CE---------EecC--CceEEEecCCCCCCEEEEEEEEeCC
Q psy6361 7 VEQAMLLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKD-LL---------YVTR--NGSFVINNIAEKDTNVYTCTVSNAA 74 (148)
Q Consensus 7 ~~~~~~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~-~~---------~~~~--~~~l~i~~~~~~d~g~y~C~~~~~~ 74 (148)
...+..|+.+.|.|.+.+.+.+ .+.|+++ +. .... ...|.|.++..+|+|.|.|.+.+..
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~--------~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~ 74 (86)
T smart00409 3 SVTVKEGESVTLSCEVSGSPPP--------EVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSS 74 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCC--------eEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCC
Confidence 4567899999999999988554 6999998 31 1111 3679999999999999999999777
Q ss_pred CCcEEEEEEEE
Q psy6361 75 GSTSKTIQMNV 85 (148)
Q Consensus 75 ~~~~~~~~l~v 85 (148)
+.....+.|.|
T Consensus 75 ~~~~~~~~l~V 85 (86)
T smart00409 75 GSASSTTTLTV 85 (86)
T ss_pred CeEEEEEEEEE
Confidence 66544455543
No 119
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=98.94 E-value=2.9e-08 Score=54.02 Aligned_cols=71 Identities=21% Similarity=0.328 Sum_probs=53.6
Q ss_pred eeeEeeeccceeeeeecccCCCCcCCCCccEEEEeeC-CE---------EecC--CceEEEecCCCCCCEEEEEEEEeCC
Q psy6361 7 VEQAMLLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKD-LL---------YVTR--NGSFVINNIAEKDTNVYTCTVSNAA 74 (148)
Q Consensus 7 ~~~~~~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~-~~---------~~~~--~~~l~i~~~~~~d~g~y~C~~~~~~ 74 (148)
...+..|+.+.|.|.+.+.+.+ .+.|+++ +. .... ...|.|.++..+|+|.|.|.+.+..
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~--------~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~ 74 (86)
T smart00410 3 SVTVKEGESVTLSCEVSGSPPP--------EVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSS 74 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCC--------eEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCC
Confidence 4567899999999999988554 6999998 31 1111 3679999999999999999999777
Q ss_pred CCcEEEEEEEE
Q psy6361 75 GSTSKTIQMNV 85 (148)
Q Consensus 75 ~~~~~~~~l~v 85 (148)
+.....+.|.|
T Consensus 75 ~~~~~~~~l~V 85 (86)
T smart00410 75 GSASSTTTLTV 85 (86)
T ss_pred CeEEEEEEEEE
Confidence 66544455543
No 120
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=98.92 E-value=7.3e-09 Score=57.52 Aligned_cols=58 Identities=14% Similarity=0.207 Sum_probs=44.4
Q ss_pred CCEEEeCCCceEEEecCCcEEEEeeeecccCCeEEEEECCEEeecCCceEE--EEEEEEee
Q psy6361 88 PPFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHYIT--FFLFFQRL 146 (148)
Q Consensus 88 ~p~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~g~~l~~~~~~~~--~~l~~~~~ 146 (148)
+|.+... +.+..+.+|+.+.|.|.+.|.|.|.++|+|++..+....++.. ..|.|..+
T Consensus 1 ~p~i~~~-~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~L~I~~v 60 (88)
T cd05851 1 PADINVK-FKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEISMSGAVLKIFNI 60 (88)
T ss_pred CCceEEc-cccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEEecCCCEEEECcC
Confidence 4667777 7788899999999999999999999999999987765433321 24555443
No 121
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=98.91 E-value=1.4e-08 Score=56.86 Aligned_cols=49 Identities=18% Similarity=0.470 Sum_probs=42.2
Q ss_pred CCEEEeCCCceEEEecCCcEEEEeeeecccCCeEEEEECCEEeecCCceE
Q psy6361 88 PPFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHYI 137 (148)
Q Consensus 88 ~p~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~g~~l~~~~~~~ 137 (148)
+|.+... +....+.+|+.+.|.|.+.|.|.|.+.|+++|..+....++.
T Consensus 3 ~~~~~~~-p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~ 51 (92)
T cd05747 3 PATILTK-PRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQ 51 (92)
T ss_pred CCccccc-CccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEE
Confidence 5777777 788999999999999999999999999999999887655443
No 122
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.91 E-value=2.6e-08 Score=57.63 Aligned_cols=75 Identities=17% Similarity=0.261 Sum_probs=52.7
Q ss_pred eeccceeeeeecccCCC--CcCCCCccEEEEeeCC-----------------------EEe-------cCCceEEEecCC
Q psy6361 12 LLDLIPMHSRYNYTNLP--QSRNPGQVIKRYLKDL-----------------------LYV-------TRNGSFVINNIA 59 (148)
Q Consensus 12 ~g~~~~l~C~~~~~~~p--~~~~~~~~~v~W~~~~-----------------------~~~-------~~~~~l~i~~~~ 59 (148)
+|+++.|.|.....+.+ .+.......+.|+|.. +.. ....+|.|.+++
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~ 80 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR 80 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence 58899999999876532 1111112379999852 111 134679999999
Q ss_pred CCCCEEEEEEEEeCCCCcEEEEEEEEe
Q psy6361 60 EKDTNVYTCTVSNAAGSTSKTIQMNVL 86 (148)
Q Consensus 60 ~~d~g~y~C~~~~~~~~~~~~~~l~v~ 86 (148)
.+|+|.|.|.+..........+.|.|.
T Consensus 81 ~sD~G~Y~C~v~~~~~~~~~~v~l~V~ 107 (110)
T cd05878 81 SSDSGVYRCEVMHGIEDEQDTVPLEVT 107 (110)
T ss_pred hhhCEEEEEEEEeCCCcceEEEEEEEE
Confidence 999999999998866667777777765
No 123
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.91 E-value=1.8e-08 Score=57.24 Aligned_cols=35 Identities=23% Similarity=0.421 Sum_probs=28.8
Q ss_pred ceEEEecCCCCCCEEEEEEEEeCCCCcEEEEEEEE
Q psy6361 51 GSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNV 85 (148)
Q Consensus 51 ~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v 85 (148)
.+|.|.+++.+|+|.|+|.+.+..+.....+.|.|
T Consensus 65 ~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 65 VALRIHNVRASDEGLYTCFFQSDGFYEEATVELKV 99 (100)
T ss_pred EEEEEEcCChhhCEEEEEEEecCCcEEEEEEEEEE
Confidence 57999999999999999999987666666666655
No 124
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.90 E-value=1.3e-08 Score=58.51 Aligned_cols=73 Identities=18% Similarity=0.280 Sum_probs=50.3
Q ss_pred eeccceeeeeecccCCCCcCCCCccEEEEeeCC-------------------------EEe-----cCCceEEEecCCCC
Q psy6361 12 LLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDL-------------------------LYV-----TRNGSFVINNIAEK 61 (148)
Q Consensus 12 ~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~-------------------------~~~-----~~~~~l~i~~~~~~ 61 (148)
.|++++|.|.+...+... ....+.+.|+|.. +.. ....+|.|.+++.+
T Consensus 1 ~G~~vtL~C~~~~~~~~~--~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~ 78 (106)
T cd05877 1 RGGNVTLPCRYHYEPELS--APRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLE 78 (106)
T ss_pred CCCcEEEEeEeECCCcCC--CCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChH
Confidence 378999999987653100 0111268999852 000 11247999999999
Q ss_pred CCEEEEEEEEeCCCCcEEEEEEEEe
Q psy6361 62 DTNVYTCTVSNAAGSTSKTIQMNVL 86 (148)
Q Consensus 62 d~g~y~C~~~~~~~~~~~~~~l~v~ 86 (148)
|+|.|.|.+.+..+.....+.|.|.
T Consensus 79 DsG~Y~C~v~~~~~~~~~~~~l~v~ 103 (106)
T cd05877 79 DYGRYRCEVIDGLEDESVVVALRLR 103 (106)
T ss_pred HCEEEEEEEEecccceEEEEEEEEE
Confidence 9999999999877777777777664
No 125
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=98.89 E-value=2e-08 Score=56.88 Aligned_cols=48 Identities=13% Similarity=0.210 Sum_probs=41.1
Q ss_pred CEEEeCCCceEEEecCCcEEEEeeeecccCCeEEEEECCEEeecCCceE
Q psy6361 89 PFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHYI 137 (148)
Q Consensus 89 p~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~g~~l~~~~~~~ 137 (148)
|.|... +....+..|+.+.|.|.+.|.|.|.+.|+|||+.+..+.++.
T Consensus 1 p~~~~~-p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~ 48 (98)
T cd05762 1 PQIIQF-PEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIK 48 (98)
T ss_pred CceEEC-CcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEE
Confidence 456666 778899999999999999999999999999999997665543
No 126
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.88 E-value=3.6e-08 Score=57.07 Aligned_cols=75 Identities=12% Similarity=0.176 Sum_probs=51.8
Q ss_pred eeccceeeeeecccCCCCc----CCCCccEEEEeeCC-----------------------EE-------ecCCceEEEec
Q psy6361 12 LLDLIPMHSRYNYTNLPQS----RNPGQVIKRYLKDL-----------------------LY-------VTRNGSFVINN 57 (148)
Q Consensus 12 ~g~~~~l~C~~~~~~~p~~----~~~~~~~v~W~~~~-----------------------~~-------~~~~~~l~i~~ 57 (148)
+|++++|.|.......+.. ..+....+.|+|.. +. ...+.+|.|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 4889999999986542210 11222379999851 11 12467899999
Q ss_pred CCCCCCEEEEEEEEeCCCCcEEEEEEEEe
Q psy6361 58 IAEKDTNVYTCTVSNAAGSTSKTIQMNVL 86 (148)
Q Consensus 58 ~~~~d~g~y~C~~~~~~~~~~~~~~l~v~ 86 (148)
++.+|+|.|+|.+.+.....+..+.|.|.
T Consensus 81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v~ 109 (112)
T cd05900 81 LRSNDSGTYRCEVMHGIEDNYDTVEVQVK 109 (112)
T ss_pred cccccCEEEEEEEecCCCCceeEEEEEEE
Confidence 99999999999999776666666666553
No 127
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.87 E-value=2.8e-08 Score=54.51 Aligned_cols=57 Identities=9% Similarity=0.072 Sum_probs=45.8
Q ss_pred eeeeEeeeccceeeeeecccCCCCcCCCCccEEEEeeCCE-------EecCCceEEEecCCCCCCEEEEEEEE
Q psy6361 6 NVEQAMLLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDLL-------YVTRNGSFVINNIAEKDTNVYTCTVS 71 (148)
Q Consensus 6 ~~~~~~~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~~-------~~~~~~~l~i~~~~~~d~g~y~C~~~ 71 (148)
....+..|+++.|.|...+... ++.|++++. .......|.|.+++.+|+|.|.|.+.
T Consensus 4 ~~~tv~~g~~v~L~C~~~s~~A---------~v~W~~ng~~l~~~~r~~~~~~GLlI~~~~~~dsG~Y~C~s~ 67 (85)
T cd05872 4 KNRTVAPGADVVLPCQLRSNLA---------SPVWLFNGTPLNAQFSYRVGTDGLLILVTSPEHSGTYRCYSE 67 (85)
T ss_pred eEEEEecCCCEEEECCCCCCCc---------cEEEEECCcccCCCcceEEeCCCCEEEECCHhhCEEEEEEEe
Confidence 3567899999999999888644 599999972 23344568899999999999999865
No 128
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=98.87 E-value=9.5e-09 Score=56.09 Aligned_cols=37 Identities=32% Similarity=0.790 Sum_probs=33.9
Q ss_pred CceEEEecCCcEEEEeeeecccCC-eEEEEECCEEeec
Q psy6361 96 QESVAIVVNHPMNISCSHYGVPTP-DFSWYKDGSLLRI 132 (148)
Q Consensus 96 ~~~~~~~~g~~~~l~C~~~g~p~~-~~~W~~~g~~l~~ 132 (148)
|.+..+.+|+.+.|.|.+.|.|.| .+.|+|||.++..
T Consensus 5 P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~ 42 (81)
T cd05749 5 PEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGD 42 (81)
T ss_pred CCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCC
Confidence 677888999999999999999999 7999999999864
No 129
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.86 E-value=2.5e-08 Score=57.29 Aligned_cols=73 Identities=18% Similarity=0.264 Sum_probs=51.5
Q ss_pred eeccceeeeeecccCCCCcCCCCccEEEEeeC---C----------------------EE-----ecCCceEEEecCCCC
Q psy6361 12 LLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKD---L----------------------LY-----VTRNGSFVINNIAEK 61 (148)
Q Consensus 12 ~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~---~----------------------~~-----~~~~~~l~i~~~~~~ 61 (148)
.|+++.|.|.+...+.+. ......+.|+|. . +. .....+|.|.+++.+
T Consensus 1 ~G~~V~L~C~~~~~~~~~--~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~s 78 (106)
T cd05714 1 LGGNVTLPCRFHLEPALS--APHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLE 78 (106)
T ss_pred CCCCEEEeEEeECCcccC--CCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHH
Confidence 488999999988654210 001127999986 1 00 113568999999999
Q ss_pred CCEEEEEEEEeCCCCcEEEEEEEEe
Q psy6361 62 DTNVYTCTVSNAAGSTSKTIQMNVL 86 (148)
Q Consensus 62 d~g~y~C~~~~~~~~~~~~~~l~v~ 86 (148)
|+|.|.|.+.+..+.....+.|.|.
T Consensus 79 D~G~Y~C~v~~~~~~~~~~v~L~V~ 103 (106)
T cd05714 79 DSGRYRCEVIDGIEDEQDTVELEVR 103 (106)
T ss_pred HCEEEEEEEEcCCCceEEEEEEEEE
Confidence 9999999999876666777777664
No 130
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.85 E-value=3.9e-08 Score=55.15 Aligned_cols=63 Identities=10% Similarity=0.141 Sum_probs=47.6
Q ss_pred ceeeeEeeeccceeeeeecccCCCCcCCCCccEEEEeeCC---------------EE-----ecCCceEEEecCCCCCCE
Q psy6361 5 MNVEQAMLLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDL---------------LY-----VTRNGSFVINNIAEKDTN 64 (148)
Q Consensus 5 ~~~~~~~~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~---------------~~-----~~~~~~l~i~~~~~~d~g 64 (148)
.....+..|+++.|.|.+.+.... .+.|++.+ +. .....+|.|.++..+|+|
T Consensus 4 ~~nvtv~~G~ta~L~C~v~~~~~~--------~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G 75 (95)
T cd05881 4 TEDVTVVEGEVAIISCRVKNNDDS--------VIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEG 75 (95)
T ss_pred cCceEEcCCCcEEEEEEEccCCcc--------EEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCE
Confidence 345778999999999999998654 46777654 11 122346999999999999
Q ss_pred EEEEEEEeCCC
Q psy6361 65 VYTCTVSNAAG 75 (148)
Q Consensus 65 ~y~C~~~~~~~ 75 (148)
.|.|.+.....
T Consensus 76 ~Y~Cqv~t~p~ 86 (95)
T cd05881 76 RYFCQLYTDPP 86 (95)
T ss_pred EEEEEEEcccC
Confidence 99999876544
No 131
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.84 E-value=2.9e-08 Score=56.11 Aligned_cols=66 Identities=18% Similarity=0.172 Sum_probs=47.0
Q ss_pred eccceeeeeecccCCCCcCCCCccEEEEeeCC------------------------EE-----ecCCceEEEecCCCCCC
Q psy6361 13 LDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDL------------------------LY-----VTRNGSFVINNIAEKDT 63 (148)
Q Consensus 13 g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~------------------------~~-----~~~~~~l~i~~~~~~d~ 63 (148)
|++++|.|......... .+.|+|.. +. .....+|.|.+++.+|+
T Consensus 1 G~~vtL~C~~~~~~~~~-------~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~ 73 (97)
T cd05846 1 GGNVTLSCNLTLPEEVL-------QVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDE 73 (97)
T ss_pred CCcEEEEEEeCCCCeeE-------EEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeee
Confidence 67899999876554332 58898842 10 11346799999999999
Q ss_pred EEEEEEEEeC-CCCcEEEEEEEE
Q psy6361 64 NVYTCTVSNA-AGSTSKTIQMNV 85 (148)
Q Consensus 64 g~y~C~~~~~-~~~~~~~~~l~v 85 (148)
|.|.|.+... .+..+..+.|.|
T Consensus 74 G~Y~C~~~~~p~g~~~~~~~L~v 96 (97)
T cd05846 74 GCYKCIFNTFPDGSKSGTMCLTV 96 (97)
T ss_pred EEEEEEEEeCCCCCeeeEEEEEE
Confidence 9999998754 455666667765
No 132
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.83 E-value=1.4e-08 Score=58.56 Aligned_cols=64 Identities=13% Similarity=0.247 Sum_probs=49.0
Q ss_pred CcceeeeEeeeccceeeeeecccCCCCcCCCCccEEEEeeCC---------------------EE-e-----cCCceEEE
Q psy6361 3 GTMNVEQAMLLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDL---------------------LY-V-----TRNGSFVI 55 (148)
Q Consensus 3 ~~~~~~~~~~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~---------------------~~-~-----~~~~~l~i 55 (148)
.......+..|+++.|.|.+.+.+.+ .+.||+.. +. . .....|.|
T Consensus 3 q~~~~v~~~~G~~v~L~C~~~~~~~~--------~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I 74 (109)
T cd04983 3 QSPQSLSVQEGENVTLNCNYSTSTFY--------YLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHI 74 (109)
T ss_pred ecCCceEEcCCCCEEEEEEECCCCcc--------EEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEE
Confidence 34456789999999999999977444 69999852 00 0 12457999
Q ss_pred ecCCCCCCEEEEEEEEeCC
Q psy6361 56 NNIAEKDTNVYTCTVSNAA 74 (148)
Q Consensus 56 ~~~~~~d~g~y~C~~~~~~ 74 (148)
.+++.+|+|.|.|.+.+..
T Consensus 75 ~~~~~~DsG~Y~C~~~~~~ 93 (109)
T cd04983 75 SAAQLSDSAVYFCALSESG 93 (109)
T ss_pred CCCCHHHCEEEEEEEecCC
Confidence 9999999999999988643
No 133
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.83 E-value=2.6e-08 Score=56.34 Aligned_cols=67 Identities=13% Similarity=0.239 Sum_probs=47.8
Q ss_pred eeeccceeeeeecc-cCCCCcCCCCccEEEEeeCC------------------------E--EecCCceEEEecCCCCCC
Q psy6361 11 MLLDLIPMHSRYNY-TNLPQSRNPGQVIKRYLKDL------------------------L--YVTRNGSFVINNIAEKDT 63 (148)
Q Consensus 11 ~~g~~~~l~C~~~~-~~~p~~~~~~~~~v~W~~~~------------------------~--~~~~~~~l~i~~~~~~d~ 63 (148)
.+|++|+|.|.... .... .+.|++.. + ....+.+|.|.+++.+|+
T Consensus 2 ~~G~sVtL~c~~~~~~~~~--------~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~Ds 73 (97)
T cd05775 2 ILGGSVTLPLNIPDGTEIE--------SITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDA 73 (97)
T ss_pred ccCCeEEEeCCCCCCcEEE--------EEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHC
Confidence 47999999998865 2222 58888743 1 112246899999999999
Q ss_pred EEEEEEEEeCCCC-cEEEEEEEE
Q psy6361 64 NVYTCTVSNAAGS-TSKTIQMNV 85 (148)
Q Consensus 64 g~y~C~~~~~~~~-~~~~~~l~v 85 (148)
|.|.|.+....+. ....+.|.|
T Consensus 74 G~Y~c~v~~~~~~~~~~~f~L~v 96 (97)
T cd05775 74 GSYRAEINTKNGVTITKEFTLHI 96 (97)
T ss_pred EEEEEEEEcCCCCeEEEEEEEEe
Confidence 9999999877655 455555554
No 134
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=98.82 E-value=4.6e-08 Score=54.74 Aligned_cols=41 Identities=32% Similarity=0.818 Sum_probs=35.9
Q ss_pred CceEEEecCCcEEEEeeeecccCCeEEEEECCEEeecCCce
Q psy6361 96 QESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHY 136 (148)
Q Consensus 96 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~g~~l~~~~~~ 136 (148)
|....+.+|+.+.|.|.+.|.|.|.+.|+|+|.++....++
T Consensus 8 p~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~ 48 (92)
T cd05737 8 PDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHY 48 (92)
T ss_pred CceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCE
Confidence 56678889999999999999999999999999998765543
No 135
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=98.75 E-value=9e-08 Score=54.47 Aligned_cols=40 Identities=15% Similarity=0.331 Sum_probs=34.5
Q ss_pred CceEEEecCCcEEEEeeeec-ccCCeEEEEECCEEeecCCc
Q psy6361 96 QESVAIVVNHPMNISCSHYG-VPTPDFSWYKDGSLLRIQSH 135 (148)
Q Consensus 96 ~~~~~~~~g~~~~l~C~~~g-~p~~~~~W~~~g~~l~~~~~ 135 (148)
.....+.+|+.+.|.|.+.| .|.|.+.|+|||.++.....
T Consensus 10 ~~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~ 50 (101)
T cd04975 10 NTTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLT 50 (101)
T ss_pred CceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcc
Confidence 34677889999999999999 89999999999999985444
No 136
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.75 E-value=3.6e-08 Score=55.09 Aligned_cols=57 Identities=11% Similarity=0.127 Sum_probs=43.9
Q ss_pred eeEeeeccceeeeeecccCCCCcCCCCccEEEEeeCCEE--------ecCCceEEEecCCCCCCEEEEEEEEeC
Q psy6361 8 EQAMLLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDLLY--------VTRNGSFVINNIAEKDTNVYTCTVSNA 73 (148)
Q Consensus 8 ~~~~~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~~~--------~~~~~~l~i~~~~~~d~g~y~C~~~~~ 73 (148)
..+..|++|+|.|... .+.. .+.|+|+|.. ......+.|.+++.+|+|.|+|...+.
T Consensus 11 ~vV~~G~~VtL~C~~~-~~~~--------~f~l~k~g~~~~~~~~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 11 SVVPLGKPVTLRCQGP-YGAV--------EYRLYREGSTFAVKKPPEPQNKAKFFIPSMKREHAGRYRCYYRSG 75 (91)
T ss_pred CccCCCCcEEEEEecC-CCCC--------EEEEEECCCCccccccCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence 4678999999999875 3333 6899998721 112346999999999999999999875
No 137
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=98.74 E-value=8.8e-08 Score=52.79 Aligned_cols=51 Identities=20% Similarity=0.377 Sum_probs=40.0
Q ss_pred CceEEEecCCcEEEEeeeecccCCeEEEEECCEEeecCCceEE--EEEEEEee
Q psy6361 96 QESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHYIT--FFLFFQRL 146 (148)
Q Consensus 96 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~g~~l~~~~~~~~--~~l~~~~~ 146 (148)
|.+..+..|+.+.|.|.+.|.|.|.+.|+|+|..+....++.. ..|.|.++
T Consensus 6 p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~L~i~~~ 58 (85)
T cd05728 6 ISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVEAGDLRITKL 58 (85)
T ss_pred CCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEEeCCEEEEeeC
Confidence 6677888999999999999999999999999999876544332 24555443
No 138
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.74 E-value=9.3e-08 Score=54.06 Aligned_cols=67 Identities=13% Similarity=0.256 Sum_probs=46.2
Q ss_pred ccceeeeeecccCCCCcCCCCccEEEEeeCCE-------------------------Eec----CCceEEEecCCCCCCE
Q psy6361 14 DLIPMHSRYNYTNLPQSRNPGQVIKRYLKDLL-------------------------YVT----RNGSFVINNIAEKDTN 64 (148)
Q Consensus 14 ~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~~-------------------------~~~----~~~~l~i~~~~~~d~g 64 (148)
+++.|.|.+...... ....+.|+|... ... ...+|.|.+++.+|+|
T Consensus 1 ~~v~L~C~~~~~~~~-----~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G 75 (98)
T cd05718 1 ESVTLECSFPVPGPV-----QITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEG 75 (98)
T ss_pred CCEEEEeEeeCCCCc-----eEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCE
Confidence 468899998775411 012689998530 000 2468999999999999
Q ss_pred EEEEEEEe-CCCCcEEEEEEEE
Q psy6361 65 VYTCTVSN-AAGSTSKTIQMNV 85 (148)
Q Consensus 65 ~y~C~~~~-~~~~~~~~~~l~v 85 (148)
.|.|.+.. ..+.....+.|.|
T Consensus 76 ~Y~C~v~~~~~g~~~~~~~l~V 97 (98)
T cd05718 76 NYICEFATFPQGNRQKVTTLTV 97 (98)
T ss_pred EEEEEEEeCCCCcEEEEEEEEe
Confidence 99999875 4566666666665
No 139
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=98.73 E-value=5.4e-08 Score=52.20 Aligned_cols=44 Identities=25% Similarity=0.488 Sum_probs=34.6
Q ss_pred cCCcEEEEeeeecccCCeEEEEECCEEeecCCceEE---EEEEEEee
Q psy6361 103 VNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHYIT---FFLFFQRL 146 (148)
Q Consensus 103 ~g~~~~l~C~~~g~p~~~~~W~~~g~~l~~~~~~~~---~~l~~~~~ 146 (148)
+|+.+.|.|.+.|.|.|.+.|+|+|..+..+.++.. ..|.|..+
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~v 47 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSSGTLRISRV 47 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEccCCeEEEeeC
Confidence 588999999999999999999999998876544432 24666554
No 140
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.73 E-value=4.2e-08 Score=56.76 Aligned_cols=61 Identities=11% Similarity=0.051 Sum_probs=46.8
Q ss_pred cceeeeEeeeccceeeeeecccCCCCcCCCCccEEEEeeCC-----------------EE-----------e--cCCceE
Q psy6361 4 TMNVEQAMLLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDL-----------------LY-----------V--TRNGSF 53 (148)
Q Consensus 4 ~~~~~~~~~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~-----------------~~-----------~--~~~~~l 53 (148)
......+..|++++|.|.+.+ +.+ .+.|||.. .. . .....|
T Consensus 4 ~p~~~~v~~G~~v~l~C~~~~-~~~--------~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L 74 (110)
T cd05899 4 SPRYLIKGRGQSVTLRCSQTS-GHD--------NMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSL 74 (110)
T ss_pred CCCceEEcCCCcEEEEEEECC-CCC--------EEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEE
Confidence 445678999999999999987 444 69999963 00 0 123579
Q ss_pred EEecCCCCCCEEEEEEEEeC
Q psy6361 54 VINNIAEKDTNVYTCTVSNA 73 (148)
Q Consensus 54 ~i~~~~~~d~g~y~C~~~~~ 73 (148)
.|.+++.+|+|.|+|.+.+.
T Consensus 75 ~I~~~~~~Dsg~Y~Ca~~~~ 94 (110)
T cd05899 75 TIKSAEPEDSAVYLCASSLG 94 (110)
T ss_pred EECCCChhhCEEEEEEeeCC
Confidence 99999999999999998754
No 141
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=98.73 E-value=4.8e-08 Score=55.27 Aligned_cols=44 Identities=27% Similarity=0.665 Sum_probs=39.3
Q ss_pred CCEEEeCCCceEEEecCCcEEEEeeeecccCCeEEEEECCEEeec
Q psy6361 88 PPFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRI 132 (148)
Q Consensus 88 ~p~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~g~~l~~ 132 (148)
+|.+... +....+.+|+.+.|.|.+.|.|.|.+.|+|+|..+..
T Consensus 1 ~P~i~~~-p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~ 44 (100)
T cd07693 1 PPRIVEH-PSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLET 44 (100)
T ss_pred CCeEEec-CceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECcc
Confidence 4677777 7888899999999999999999999999999998865
No 142
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=98.73 E-value=1.7e-07 Score=52.01 Aligned_cols=49 Identities=27% Similarity=0.658 Sum_probs=42.8
Q ss_pred CEEEeCCCceEEEecCCcEEEEeeeecccCCeEEEEECCEEeecCCceEE
Q psy6361 89 PFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHYIT 138 (148)
Q Consensus 89 p~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~g~~l~~~~~~~~ 138 (148)
|.|... +.+..+.+|+.+.|.|.+.+.|.+.+.|+++|..+....++..
T Consensus 1 P~~~~~-~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~ 49 (90)
T PF07679_consen 1 PVFTKK-PKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQI 49 (90)
T ss_dssp EEEEEE-SSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEE
T ss_pred CEEEEe-cCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeee
Confidence 566777 7889999999999999999999999999999999998666553
No 143
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.72 E-value=1.4e-07 Score=55.01 Aligned_cols=67 Identities=15% Similarity=0.199 Sum_probs=47.1
Q ss_pred eeeeEeeeccceeeeeecccCCCCcCCCCccEEEEeeC---C-----------------------EE------ecCCceE
Q psy6361 6 NVEQAMLLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKD---L-----------------------LY------VTRNGSF 53 (148)
Q Consensus 6 ~~~~~~~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~---~-----------------------~~------~~~~~~l 53 (148)
....+..|+++.|.|.+...... .....+.|++. + +. ...+.+|
T Consensus 6 ~~v~~~~G~~v~L~C~~s~~~~~----~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL 81 (115)
T cd05880 6 KEVEAVNGTDVRLKCTFSSSAPI----GDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASI 81 (115)
T ss_pred ceEEEEcCCCEEEEEEEEeCCCC----CCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEE
Confidence 46789999999999998754321 01125889742 1 00 0124579
Q ss_pred EEecCCCCCCEEEEEEEEeCCCC
Q psy6361 54 VINNIAEKDTNVYTCTVSNAAGS 76 (148)
Q Consensus 54 ~i~~~~~~d~g~y~C~~~~~~~~ 76 (148)
.|.+++.+|+|.|.|.+.+....
T Consensus 82 ~I~~v~~~D~G~Y~C~v~~~~~~ 104 (115)
T cd05880 82 LIWQLQPTDNGTYTCQVKNPPDV 104 (115)
T ss_pred EEeeCChhhCEEEEEEEEeCCCC
Confidence 99999999999999999986653
No 144
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.70 E-value=1.9e-07 Score=54.44 Aligned_cols=67 Identities=15% Similarity=0.203 Sum_probs=47.5
Q ss_pred eeeeEeeeccceeeeeecccCCCCcCCCCccEEEEee---------------CCEE------------------ecCCce
Q psy6361 6 NVEQAMLLDLIPMHSRYNYTNLPQSRNPGQVIKRYLK---------------DLLY------------------VTRNGS 52 (148)
Q Consensus 6 ~~~~~~~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~---------------~~~~------------------~~~~~~ 52 (148)
....+..|+.+.|.|........ .....+.|.. ++.. ...+.+
T Consensus 6 ~ev~a~~G~~v~L~C~f~~~~~~----~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daS 81 (116)
T cd05879 6 REVYGTVGSDVTLSCSFWSSEWI----SDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGS 81 (116)
T ss_pred ceEEEEcCCcEEEEEEEecCCCC----CCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeE
Confidence 45789999999999998753210 0123789922 2200 123467
Q ss_pred EEEecCCCCCCEEEEEEEEeCCCC
Q psy6361 53 FVINNIAEKDTNVYTCTVSNAAGS 76 (148)
Q Consensus 53 l~i~~~~~~d~g~y~C~~~~~~~~ 76 (148)
+.|.+++.+|.|.|+|.+.|....
T Consensus 82 I~I~nv~~sD~G~Y~C~v~n~p~~ 105 (116)
T cd05879 82 IVIHNLDYTDNGTFTCDVKNPPDI 105 (116)
T ss_pred EEEccCCcccCEEEEEEEEcCCCc
Confidence 999999999999999999987764
No 145
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.69 E-value=2.5e-07 Score=52.03 Aligned_cols=65 Identities=15% Similarity=0.261 Sum_probs=46.0
Q ss_pred ccceeeeeecccCCCCcCCCCccEEEEeeCC------------------------EE-----ecCCceEEEecCCCCCCE
Q psy6361 14 DLIPMHSRYNYTNLPQSRNPGQVIKRYLKDL------------------------LY-----VTRNGSFVINNIAEKDTN 64 (148)
Q Consensus 14 ~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~------------------------~~-----~~~~~~l~i~~~~~~d~g 64 (148)
++++|.|.......-. .|.|.|.. +. ...+.+|.|.+++.+|+|
T Consensus 1 ~~vtL~C~~~~~~~~~-------qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G 73 (96)
T cd05887 1 KNVTLKCRIQVNETIT-------QSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIG 73 (96)
T ss_pred CCEEEEEEecCCCcEE-------EEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccE
Confidence 3678999987544322 78897742 11 112568999999999999
Q ss_pred EEEEEEEe-CCCCcEEEEEEEE
Q psy6361 65 VYTCTVSN-AAGSTSKTIQMNV 85 (148)
Q Consensus 65 ~y~C~~~~-~~~~~~~~~~l~v 85 (148)
.|.|.+.+ +.|.......|.|
T Consensus 74 ~Y~C~v~tfP~G~~~~~~~l~~ 95 (96)
T cd05887 74 VYICKAVTFPLGNTQSSTTVTV 95 (96)
T ss_pred EEEEEEEeCCCCCeeEEEEEEE
Confidence 99999865 4566666767665
No 146
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=98.69 E-value=4.6e-07 Score=56.19 Aligned_cols=74 Identities=15% Similarity=0.154 Sum_probs=55.9
Q ss_pred eeeeEeeeccceeeeeec-ccCCCCcCCCCccEEEEeeCC-------------------EEec-----CCceEEEecCCC
Q psy6361 6 NVEQAMLLDLIPMHSRYN-YTNLPQSRNPGQVIKRYLKDL-------------------LYVT-----RNGSFVINNIAE 60 (148)
Q Consensus 6 ~~~~~~~g~~~~l~C~~~-~~~~p~~~~~~~~~v~W~~~~-------------------~~~~-----~~~~l~i~~~~~ 60 (148)
...++..|+++.|.|... +...+ .+.|+|.. +... ....|.|.+++.
T Consensus 23 ~~v~V~ege~VtLsCs~t~s~~~~--------qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~ 94 (189)
T PHA02987 23 VKITVSEHVNVKISCNKTSSFNSI--------LITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSL 94 (189)
T ss_pred EEEEEcCCCCEEEEEecCCCCccc--------eEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCCh
Confidence 467889999999999985 44444 69999973 2211 456899999999
Q ss_pred CCCEEEEEEEEeC-CC-CcEEEEEEEEec
Q psy6361 61 KDTNVYTCTVSNA-AG-STSKTIQMNVLV 87 (148)
Q Consensus 61 ~d~g~y~C~~~~~-~~-~~~~~~~l~v~~ 87 (148)
+|+|.|.|....- .| ..+....|.|..
T Consensus 95 sDeGcY~C~F~tfp~G~~~~gt~CLtVt~ 123 (189)
T PHA02987 95 KDNGCYTCIFNTLLSKNNEKGVVCLNVTT 123 (189)
T ss_pred hhCeEEEEEEEecCCCCCceeEEEEEEEc
Confidence 9999999987653 45 566777787763
No 147
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=98.68 E-value=2.3e-07 Score=52.10 Aligned_cols=45 Identities=22% Similarity=0.617 Sum_probs=35.0
Q ss_pred CEEEeCCCceEEEe---cCCcEEEEeeeecccCCeEEEEECCEEeecCC
Q psy6361 89 PFFKDEQQESVAIV---VNHPMNISCSHYGVPTPDFSWYKDGSLLRIQS 134 (148)
Q Consensus 89 p~~~~~~~~~~~~~---~g~~~~l~C~~~g~p~~~~~W~~~g~~l~~~~ 134 (148)
|.|... |.+..+. +|+.+.|.|.+.|.|.|.++|+|||..+....
T Consensus 2 P~f~~~-p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~ 49 (94)
T cd05848 2 PVFVQE-PDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTES 49 (94)
T ss_pred CeeEEC-CCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECccCC
Confidence 556655 5554443 46789999999999999999999999986433
No 148
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.66 E-value=4.2e-07 Score=51.47 Aligned_cols=36 Identities=19% Similarity=0.583 Sum_probs=30.3
Q ss_pred CceEEEecCCCCCCEEEEEEEEe-CCCCcEEEEEEEE
Q psy6361 50 NGSFVINNIAEKDTNVYTCTVSN-AAGSTSKTIQMNV 85 (148)
Q Consensus 50 ~~~l~i~~~~~~d~g~y~C~~~~-~~~~~~~~~~l~v 85 (148)
+.+|.|.+++.+|+|.|.|.+.+ ..|..+..+.|.|
T Consensus 62 daSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V 98 (99)
T cd05886 62 DGTISLSRLELEDEGVYICEFATFPTGNRESQLNLTV 98 (99)
T ss_pred cceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEE
Confidence 37899999999999999999998 4566777777766
No 149
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=98.66 E-value=2.3e-07 Score=52.84 Aligned_cols=37 Identities=16% Similarity=0.202 Sum_probs=32.7
Q ss_pred eEEEecCCcEEEEeeeecccCCeEEEEECCEEeecCC
Q psy6361 98 SVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQS 134 (148)
Q Consensus 98 ~~~~~~g~~~~l~C~~~g~p~~~~~W~~~g~~l~~~~ 134 (148)
...+..|+.+.|.|.+.|.|.|.+.|+|||+++..+.
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~ 48 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENL 48 (101)
T ss_pred eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCc
Confidence 4567778999999999999999999999999987654
No 150
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.66 E-value=1.4e-07 Score=55.02 Aligned_cols=61 Identities=8% Similarity=0.109 Sum_probs=46.1
Q ss_pred cceeeeEeeeccceeeeeecc--cCCCCcCCCCccEEEEeeCC--------------------------E----Eec--C
Q psy6361 4 TMNVEQAMLLDLIPMHSRYNY--TNLPQSRNPGQVIKRYLKDL--------------------------L----YVT--R 49 (148)
Q Consensus 4 ~~~~~~~~~g~~~~l~C~~~~--~~~p~~~~~~~~~v~W~~~~--------------------------~----~~~--~ 49 (148)
......+..|+.+.|.|.+.+ .+.+ .+.||+.. + ... .
T Consensus 4 ~p~~~~~~~G~~v~l~C~~~~~~~~~~--------~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 75 (116)
T cd04982 4 PQLSITREESKSVTISCKVSGIDFSTT--------YIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKS 75 (116)
T ss_pred cCCeEEeCCCCCEEEEEEEeCCCcccc--------EEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCC
Confidence 445678899999999999877 3444 58999952 0 001 2
Q ss_pred CceEEEecCCCCCCEEEEEEEEe
Q psy6361 50 NGSFVINNIAEKDTNVYTCTVSN 72 (148)
Q Consensus 50 ~~~l~i~~~~~~d~g~y~C~~~~ 72 (148)
...|.|.+++.+|+|.|.|.+..
T Consensus 76 ~~~L~I~~~~~~Dsg~Y~C~~~~ 98 (116)
T cd04982 76 TSTLTIQNLEKEDSATYYCAYWE 98 (116)
T ss_pred EEEEEEEECCHHHCEEEEEEEec
Confidence 35799999999999999998764
No 151
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.65 E-value=7.3e-08 Score=55.37 Aligned_cols=61 Identities=8% Similarity=0.109 Sum_probs=44.6
Q ss_pred ceeeeEeeeccceeeeeecccC-CCCcCCCCccEEEEeeCC---------------------EE----ecCCceEEEecC
Q psy6361 5 MNVEQAMLLDLIPMHSRYNYTN-LPQSRNPGQVIKRYLKDL---------------------LY----VTRNGSFVINNI 58 (148)
Q Consensus 5 ~~~~~~~~g~~~~l~C~~~~~~-~p~~~~~~~~~v~W~~~~---------------------~~----~~~~~~l~i~~~ 58 (148)
.....+..|+++.|.|.+.+.. .. .+.|||.. +. ......|.|.++
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~--------~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~ 78 (106)
T cd04980 7 PATLSVSPGESATISCKASQSVSSN--------YLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRV 78 (106)
T ss_pred CCcEEECCCCCEEEEEEECCCCCCC--------cEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCC
Confidence 3456789999999999987654 33 58898853 00 001236899999
Q ss_pred CCCCCEEEEEEEEeC
Q psy6361 59 AEKDTNVYTCTVSNA 73 (148)
Q Consensus 59 ~~~d~g~y~C~~~~~ 73 (148)
..+|+|.|.|.+.+.
T Consensus 79 ~~~Dsg~Y~Ca~~~~ 93 (106)
T cd04980 79 EPEDAAVYYCQQYGT 93 (106)
T ss_pred ChHHCEEEEEEEeCC
Confidence 999999999987653
No 152
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.63 E-value=4e-07 Score=53.17 Aligned_cols=67 Identities=18% Similarity=0.262 Sum_probs=45.8
Q ss_pred eeeeEeeeccceeeeeecccCCCCcCCCCccEEEEeeCC---------------E--------E------e----cCCce
Q psy6361 6 NVEQAMLLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDL---------------L--------Y------V----TRNGS 52 (148)
Q Consensus 6 ~~~~~~~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~---------------~--------~------~----~~~~~ 52 (148)
....+..|+.+.|.|.+....... ....+.|++.. . . . ....+
T Consensus 6 ~~v~v~~G~~vtL~C~~s~~~~~~----~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~s 81 (116)
T cd05715 6 REVYAVNGSDVRLKCTFSSSEPIS----DDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDAS 81 (116)
T ss_pred CeEEEEcCCCeEEEeEEeCCCCcC----CceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeE
Confidence 346788999999999986543210 01258897631 0 0 0 01256
Q ss_pred EEEecCCCCCCEEEEEEEEeCCCC
Q psy6361 53 FVINNIAEKDTNVYTCTVSNAAGS 76 (148)
Q Consensus 53 l~i~~~~~~d~g~y~C~~~~~~~~ 76 (148)
|.|.+++.+|+|.|.|.+.+....
T Consensus 82 L~I~~v~~~D~G~Y~C~v~~~~~~ 105 (116)
T cd05715 82 IVIHNLQFTDNGTYTCDVKNPPDI 105 (116)
T ss_pred EEEeeCCcccCEEEEEEEEeCCCC
Confidence 999999999999999999876553
No 153
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.63 E-value=2.4e-07 Score=50.63 Aligned_cols=53 Identities=13% Similarity=0.132 Sum_probs=36.9
Q ss_pred ceeeeeeccc-CCCCcCCCCccEEEEeeCCEEe----------cC------CceEEEecCCCCCCEEEEEEEEeCCCC
Q psy6361 16 IPMHSRYNYT-NLPQSRNPGQVIKRYLKDLLYV----------TR------NGSFVINNIAEKDTNVYTCTVSNAAGS 76 (148)
Q Consensus 16 ~~l~C~~~~~-~~p~~~~~~~~~v~W~~~~~~~----------~~------~~~l~i~~~~~~d~g~y~C~~~~~~~~ 76 (148)
+.|.|.+.+. |.| .++|++++... .. ...|.+......|.|.|+|.+.|....
T Consensus 2 ~~L~C~v~g~~P~~--------~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~ 71 (82)
T cd05759 2 YNLTCRARGAKPAA--------EIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALP 71 (82)
T ss_pred EEEEEEEeCccCCC--------EEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCC
Confidence 5789999875 554 69999997211 11 124556666667788999999987644
No 154
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.62 E-value=2.2e-07 Score=51.51 Aligned_cols=44 Identities=14% Similarity=0.298 Sum_probs=36.2
Q ss_pred CEEEeCCCceEEEecCCcEEEEeeeecccCCeEEEEECCEEeecC
Q psy6361 89 PFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQ 133 (148)
Q Consensus 89 p~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~g~~l~~~ 133 (148)
|.+... +....+.+|+.+.|.|.+.|.|.|.+.|++++..+...
T Consensus 2 ~~~~~~-p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~ 45 (88)
T cd04968 2 SIIVVF-PKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSS 45 (88)
T ss_pred CcEEEC-CCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCc
Confidence 344445 67788889999999999999999999999988766544
No 155
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.61 E-value=9.3e-07 Score=51.33 Aligned_cols=75 Identities=19% Similarity=0.278 Sum_probs=54.0
Q ss_pred eeccceeeeeecccCC-CC--cCCCCccEEEEeeC--------C---------------------EE-------ecCCce
Q psy6361 12 LLDLIPMHSRYNYTNL-PQ--SRNPGQVIKRYLKD--------L---------------------LY-------VTRNGS 52 (148)
Q Consensus 12 ~g~~~~l~C~~~~~~~-p~--~~~~~~~~v~W~~~--------~---------------------~~-------~~~~~~ 52 (148)
++.++.|.|.....|. |. ...+..+.|.|++- . +. ...+.+
T Consensus 1 ~~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~as 80 (117)
T cd05901 1 LSGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDAS 80 (117)
T ss_pred CCCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCceE
Confidence 3677899999997653 21 12344568999774 0 11 123578
Q ss_pred EEEecCCCCCCEEEEEEEEeCCCCcEEEEEEEEe
Q psy6361 53 FVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVL 86 (148)
Q Consensus 53 l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~ 86 (148)
|.|.+++.+|+|.|.|.+..........+.|.|.
T Consensus 81 L~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~ 114 (117)
T cd05901 81 LTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVS 114 (117)
T ss_pred EEEcccccccCEEEEEEEEECCcccEEEEEEEEE
Confidence 9999999999999999999887777777777764
No 156
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.61 E-value=1.6e-07 Score=53.13 Aligned_cols=56 Identities=11% Similarity=0.099 Sum_probs=41.4
Q ss_pred eEeeeccceeeeeeccc--CCCCcCCCCccEEEEeeCC---------------------E----EecCCceEEEecCCCC
Q psy6361 9 QAMLLDLIPMHSRYNYT--NLPQSRNPGQVIKRYLKDL---------------------L----YVTRNGSFVINNIAEK 61 (148)
Q Consensus 9 ~~~~g~~~~l~C~~~~~--~~p~~~~~~~~~v~W~~~~---------------------~----~~~~~~~l~i~~~~~~ 61 (148)
.+..|+++.|.|.+... ... .+.||+.. + .......|.|.+++.+
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~--------~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~ 73 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGN--------YVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTE 73 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCC--------CEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChh
Confidence 46789999999998765 233 48898863 0 0012246899999999
Q ss_pred CCEEEEEEEEe
Q psy6361 62 DTNVYTCTVSN 72 (148)
Q Consensus 62 d~g~y~C~~~~ 72 (148)
|+|.|.|.+.+
T Consensus 74 Dsg~Y~C~~~~ 84 (98)
T cd04984 74 DEADYYCQVWD 84 (98)
T ss_pred hCEEEEEEEcc
Confidence 99999998764
No 157
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.61 E-value=6.6e-08 Score=55.90 Aligned_cols=61 Identities=18% Similarity=0.259 Sum_probs=45.8
Q ss_pred ceeeeEeeeccceeeeeec-ccCCCCcCCCCccEEEEeeCC---------------------------EE-e----cCCc
Q psy6361 5 MNVEQAMLLDLIPMHSRYN-YTNLPQSRNPGQVIKRYLKDL---------------------------LY-V----TRNG 51 (148)
Q Consensus 5 ~~~~~~~~g~~~~l~C~~~-~~~~p~~~~~~~~~v~W~~~~---------------------------~~-~----~~~~ 51 (148)
.....+..|+++.|.|... ..... .+.|++.. .. . ....
T Consensus 8 ~~~v~~~~G~~v~L~C~~~~~~~~~--------~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 79 (114)
T PF07686_consen 8 PSPVTVQEGESVTLPCSYSSSSNQS--------SVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNF 79 (114)
T ss_dssp ESEEEEETTSEEEEEEEEESSSSGS--------EEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEE
T ss_pred CCeEEEecCCCEEEEEEEeCCCCcc--------eEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeE
Confidence 4467889999999999998 22222 68999842 00 0 1124
Q ss_pred eEEEecCCCCCCEEEEEEEEeC
Q psy6361 52 SFVINNIAEKDTNVYTCTVSNA 73 (148)
Q Consensus 52 ~l~i~~~~~~d~g~y~C~~~~~ 73 (148)
.|.|.+++.+|+|.|.|.+...
T Consensus 80 sL~i~~l~~~DsG~Y~C~v~~~ 101 (114)
T PF07686_consen 80 SLTIKNLQPSDSGTYFCQVSTS 101 (114)
T ss_dssp EEEESSESGGGEEEEEEEEEES
T ss_pred EEEECCCCcCcCEEEEEEEEEC
Confidence 6999999999999999998876
No 158
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=98.60 E-value=5.4e-07 Score=50.88 Aligned_cols=44 Identities=16% Similarity=0.425 Sum_probs=35.3
Q ss_pred CCEEEeCCCceEEEecCCcEEEEeeeecccCCeEEEEECCEEeec
Q psy6361 88 PPFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRI 132 (148)
Q Consensus 88 ~p~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~g~~l~~ 132 (148)
+|.+... +.......|+.+.|.|.+.|.|.|.++|++++..+..
T Consensus 2 ~p~i~~~-~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~ 45 (97)
T cd05869 2 KPKITYV-ENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISS 45 (97)
T ss_pred CceEEEc-cCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccC
Confidence 5777666 5555555689999999999999999999999877653
No 159
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.60 E-value=5.4e-07 Score=51.20 Aligned_cols=36 Identities=25% Similarity=0.582 Sum_probs=28.4
Q ss_pred CceEEEecCCCCCCEEEEEEEEe-CCCCcEEEEEEEE
Q psy6361 50 NGSFVINNIAEKDTNVYTCTVSN-AAGSTSKTIQMNV 85 (148)
Q Consensus 50 ~~~l~i~~~~~~d~g~y~C~~~~-~~~~~~~~~~l~v 85 (148)
+.+|.|.+++.+|+|.|.|.+.+ ..|..+..+.|.|
T Consensus 63 ~~sL~I~nv~~sD~GtY~C~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 63 DGALILRNAVQADEGKYKCRVITFPAGNFEAELVLTV 99 (100)
T ss_pred ceEEEEecCccccceEEEEEEEeCCCCCeeeEEEEEe
Confidence 45899999999999999999887 4454556666655
No 160
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=98.59 E-value=2.4e-07 Score=48.98 Aligned_cols=32 Identities=28% Similarity=0.646 Sum_probs=27.9
Q ss_pred CCcEEEEeeeecccCCeEEEEECCEEeecCCc
Q psy6361 104 NHPMNISCSHYGVPTPDFSWYKDGSLLRIQSH 135 (148)
Q Consensus 104 g~~~~l~C~~~g~p~~~~~W~~~g~~l~~~~~ 135 (148)
|+.+.|.|.+.|.|.|.+.|+|+|.++....+
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~ 32 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDE 32 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECCEECCCccc
Confidence 57899999999999999999999998865443
No 161
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.59 E-value=5e-07 Score=52.12 Aligned_cols=74 Identities=18% Similarity=0.245 Sum_probs=50.5
Q ss_pred eeccceeeeeecccCCCCcCCCCccEEEEeeCC--------------------------EEe-------cCCceEEEecC
Q psy6361 12 LLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDL--------------------------LYV-------TRNGSFVINNI 58 (148)
Q Consensus 12 ~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~--------------------------~~~-------~~~~~l~i~~~ 58 (148)
+|+++.|.|.+...|.+.. .+..+.+.|.|.. +.. ..+.+|.|.++
T Consensus 1 ~~~~v~LpC~~~~~p~~~~-~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv 79 (110)
T cd05902 1 LSSSVLLPCVFTLPPSASS-PPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRL 79 (110)
T ss_pred CCCcEEEeeEEEcCccccC-CCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCC
Confidence 4778999999775433211 1123478898751 111 13568999999
Q ss_pred CCCCCEEEEEEEEeCCCCcEEEEEEEEe
Q psy6361 59 AEKDTNVYTCTVSNAAGSTSKTIQMNVL 86 (148)
Q Consensus 59 ~~~d~g~y~C~~~~~~~~~~~~~~l~v~ 86 (148)
+.+|+|.|.|.+..........+.|.|.
T Consensus 80 ~~~D~G~Y~C~v~~g~~~~~~~v~L~V~ 107 (110)
T cd05902 80 RYSDSGTYRCEVVLGINDEQDTVPLEVT 107 (110)
T ss_pred CHHHCEEEEEEEEECCcccEEEEEEEEE
Confidence 9999999999998866556666677664
No 162
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=98.59 E-value=1.9e-07 Score=49.92 Aligned_cols=43 Identities=28% Similarity=0.441 Sum_probs=34.3
Q ss_pred CCcEEEEeeeecccCCeEEEEECCEEeecCCceEEE---EEEEEee
Q psy6361 104 NHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHYITF---FLFFQRL 146 (148)
Q Consensus 104 g~~~~l~C~~~g~p~~~~~W~~~g~~l~~~~~~~~~---~l~~~~~ 146 (148)
|+.+.|.|.+.|.|.|.+.|+|++..+....++... .|.|..+
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~~g~L~I~~v 46 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWDDGSLEILNI 46 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEcCCCEEEECcC
Confidence 578999999999999999999999988766665542 5666544
No 163
>KOG3515|consensus
Probab=98.59 E-value=2.1e-07 Score=68.82 Aligned_cols=116 Identities=17% Similarity=0.217 Sum_probs=87.7
Q ss_pred eEeeeccceeeeeecccCCCCcCCCCccEEEEeeCC------EEecCCceEEEecCCCCCCEEEEEEEEeCCCC-cEEEE
Q psy6361 9 QAMLLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDL------LYVTRNGSFVINNIAEKDTNVYTCTVSNAAGS-TSKTI 81 (148)
Q Consensus 9 ~~~~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~------~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~-~~~~~ 81 (148)
-+.+|++|.|.|.+.+.|++. .+.|++.+ ........+.......+.-+.|.|.+.|+.+. .....
T Consensus 18 ~~~~g~~v~l~C~v~~~pp~~-------~~eW~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~a~ns~~~~~~~~~ 90 (741)
T KOG3515|consen 18 GLRLGEDVPLPCRVNSNPPEI-------DVEWYHSTSGEHGRYATIADPTLVTTGDVRDTVAELNCRAFNSVGMPSRCPM 90 (741)
T ss_pred hhccCCcceeeeecCCCCCCc-------ceEEEecCcccccccccccCCceeeecchhhhhhhhhhhhcccccCceecce
Confidence 788999999999999998886 89999986 22234556777777777778999999998665 55566
Q ss_pred EEEEecCCEEEeCCCceEEEecCCcEEEEeee--ecccCCeEEEEECCEEeec
Q psy6361 82 QMNVLVPPFFKDEQQESVAIVVNHPMNISCSH--YGVPTPDFSWYKDGSLLRI 132 (148)
Q Consensus 82 ~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~--~g~p~~~~~W~~~g~~l~~ 132 (148)
.+.+..+|.-.-. ........+..+.+.|.+ .+.|.+.+.|+.++.....
T Consensus 91 ~l~v~~~pa~~~~-~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~ 142 (741)
T KOG3515|consen 91 ILDVDYPPACLPE-LGEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELN 142 (741)
T ss_pred eeccccCcccccc-ccchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeec
Confidence 7777766655544 344456677889999964 5667889999998877653
No 164
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=98.58 E-value=5e-07 Score=50.31 Aligned_cols=39 Identities=18% Similarity=0.430 Sum_probs=33.5
Q ss_pred CceEEEecCCcEEEEeeeecccCCeEEEEECCEEeecCC
Q psy6361 96 QESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQS 134 (148)
Q Consensus 96 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~g~~l~~~~ 134 (148)
+....+.+|+.+.|.|.+.|.|.|.+.|+++|..+....
T Consensus 7 p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~ 45 (90)
T cd04972 7 PNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTR 45 (90)
T ss_pred CcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCc
Confidence 455568899999999999999999999999999886543
No 165
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=98.57 E-value=5e-07 Score=50.56 Aligned_cols=41 Identities=27% Similarity=0.805 Sum_probs=35.5
Q ss_pred CceEEEecCCcEEEEeeeecccCCeEEEEECCEEeecCCce
Q psy6361 96 QESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHY 136 (148)
Q Consensus 96 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~g~~l~~~~~~ 136 (148)
|....+.+|+.+.|.|.+.|.|.|.+.||++|..+....++
T Consensus 8 p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~ 48 (92)
T cd05891 8 PDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHY 48 (92)
T ss_pred CCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCE
Confidence 56778899999999999999999999999999988765443
No 166
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=98.57 E-value=6.1e-07 Score=49.56 Aligned_cols=36 Identities=14% Similarity=0.467 Sum_probs=32.3
Q ss_pred eEEEecCCcEEEEeeeecccCCeEEEEECCEEeecC
Q psy6361 98 SVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQ 133 (148)
Q Consensus 98 ~~~~~~g~~~~l~C~~~g~p~~~~~W~~~g~~l~~~ 133 (148)
...+.+|+.+.|.|.+.|.|.|.+.|+|++.++...
T Consensus 4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~ 39 (86)
T cd05894 4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTET 39 (86)
T ss_pred EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccC
Confidence 456788999999999999999999999999999753
No 167
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.56 E-value=1.4e-06 Score=47.55 Aligned_cols=73 Identities=10% Similarity=0.176 Sum_probs=52.7
Q ss_pred eeeEeeeccceeeeeecccCCCCcCCCCccEEEEeeCC-E----EecCCceEEEecCCCCCCEEEEEEEEeCCCCcEEEE
Q psy6361 7 VEQAMLLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDL-L----YVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTI 81 (148)
Q Consensus 7 ~~~~~~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~-~----~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~ 81 (148)
+...+.|++++|+|.....+.|. ..+.|+..+ . ......+|.+..+...|+|.++|.+..........+
T Consensus 8 ~~~lL~G~sLtLtl~~~s~s~p~------~~i~w~~P~n~~~~~~~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~ 81 (88)
T cd07694 8 SDHVLSGTNLTLTLHGSSNSLPA------FKVEWRGPGNKSKQILNQDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKL 81 (88)
T ss_pred CCeeecCCcEEEEEecCCCCCCC------ccEEEeCCCCccceeccCCccEEEeceeCcccCCEEEEEEEECceEEEEEe
Confidence 56789999999999986654431 159998876 2 223678899999999999999999976543333344
Q ss_pred EEEE
Q psy6361 82 QMNV 85 (148)
Q Consensus 82 ~l~v 85 (148)
.+.|
T Consensus 82 ~V~V 85 (88)
T cd07694 82 DIKV 85 (88)
T ss_pred eEEE
Confidence 4433
No 168
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.55 E-value=7.7e-07 Score=48.19 Aligned_cols=42 Identities=19% Similarity=0.521 Sum_probs=35.0
Q ss_pred CEEEeCCCceEEEecCCcEEEEeeeecccC-CeEEEEECCEEee
Q psy6361 89 PFFKDEQQESVAIVVNHPMNISCSHYGVPT-PDFSWYKDGSLLR 131 (148)
Q Consensus 89 p~~~~~~~~~~~~~~g~~~~l~C~~~g~p~-~~~~W~~~g~~l~ 131 (148)
|.+... |+...+.+|+.+.|.|.+.+.|. +.+.|+|||..+.
T Consensus 1 ~vv~~~-P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~ 43 (78)
T cd05752 1 AVVSLD-PPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLE 43 (78)
T ss_pred CeEEeC-CCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEee
Confidence 345555 77889999999999999988875 4799999999884
No 169
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=98.54 E-value=7.6e-07 Score=50.04 Aligned_cols=37 Identities=22% Similarity=0.585 Sum_probs=32.6
Q ss_pred ceEEEecCCcEEEEeeeecccCCeEEEEECCEEeecC
Q psy6361 97 ESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQ 133 (148)
Q Consensus 97 ~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~g~~l~~~ 133 (148)
....+..|+.+.|.|.+.|.|.|.+.|+++|..+...
T Consensus 11 ~~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~ 47 (95)
T cd05730 11 VNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESG 47 (95)
T ss_pred cceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCC
Confidence 3456789999999999999999999999999988764
No 170
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=98.54 E-value=4.7e-07 Score=51.21 Aligned_cols=60 Identities=17% Similarity=0.127 Sum_probs=43.6
Q ss_pred eeEeeeccceeeeeecccCCCCcCCCCccEEEEeeCC--------------------EEe------cCCceEEEecCCCC
Q psy6361 8 EQAMLLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDL--------------------LYV------TRNGSFVINNIAEK 61 (148)
Q Consensus 8 ~~~~~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~--------------------~~~------~~~~~l~i~~~~~~ 61 (148)
..+..|++++|.|.+....... .+.|+|.. +.. .....|.|.+++.+
T Consensus 2 v~~~~G~~vtl~C~~~~~~~~~-------~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~ 74 (98)
T cd05716 2 VTGELGGSVTIPCPYPPKNRSY-------EKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKE 74 (98)
T ss_pred EEEEeCCeEEEEeeCCCCCCCc-------EeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHH
Confidence 5688999999999987542221 58898863 000 12247999999999
Q ss_pred CCEEEEEEEEeCC
Q psy6361 62 DTNVYTCTVSNAA 74 (148)
Q Consensus 62 d~g~y~C~~~~~~ 74 (148)
|+|.|.|.+....
T Consensus 75 DsG~Y~C~~~~~~ 87 (98)
T cd05716 75 DAGWYWCGVGDDG 87 (98)
T ss_pred HCEEEEEEcccCC
Confidence 9999999876543
No 171
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=98.52 E-value=5e-07 Score=50.81 Aligned_cols=39 Identities=36% Similarity=0.712 Sum_probs=34.5
Q ss_pred CceEEEecCCcEEEEeeeecccCCeEEEEECCEEeecCC
Q psy6361 96 QESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQS 134 (148)
Q Consensus 96 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~g~~l~~~~ 134 (148)
|....+.+|+.+.|.|.+.|.|.|.+.|+|||..+....
T Consensus 6 P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~ 44 (95)
T cd05722 6 PSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVS 44 (95)
T ss_pred CCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECcccc
Confidence 666778899999999999999999999999999987543
No 172
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=98.52 E-value=4.8e-07 Score=49.72 Aligned_cols=37 Identities=24% Similarity=0.602 Sum_probs=32.1
Q ss_pred EEEecCCcEEEEeeeecccCCeEEEEECCEEeecCCc
Q psy6361 99 VAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSH 135 (148)
Q Consensus 99 ~~~~~g~~~~l~C~~~g~p~~~~~W~~~g~~l~~~~~ 135 (148)
..+.+|+.+.|.|.+.|.|.|.+.|+|+|..+..+.+
T Consensus 4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~ 40 (85)
T cd05857 4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHR 40 (85)
T ss_pred EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCc
Confidence 3567899999999999999999999999999876544
No 173
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.51 E-value=3.9e-07 Score=52.08 Aligned_cols=59 Identities=15% Similarity=0.242 Sum_probs=44.7
Q ss_pred eEeeeccceeeeeeccc-CCCCcCCCCccEEEEeeCC---------E-------------------Eec--CCceEEEec
Q psy6361 9 QAMLLDLIPMHSRYNYT-NLPQSRNPGQVIKRYLKDL---------L-------------------YVT--RNGSFVINN 57 (148)
Q Consensus 9 ~~~~g~~~~l~C~~~~~-~~p~~~~~~~~~v~W~~~~---------~-------------------~~~--~~~~l~i~~ 57 (148)
.+..|+.++|.|.+... ... .+.|++.. . ... ....|.|.+
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~--------~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~ 73 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSY--------YIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISS 73 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcc--------eEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECC
Confidence 57789999999999876 333 68999853 0 000 234799999
Q ss_pred CCCCCCEEEEEEEEeCCC
Q psy6361 58 IAEKDTNVYTCTVSNAAG 75 (148)
Q Consensus 58 ~~~~d~g~y~C~~~~~~~ 75 (148)
++.+|+|.|.|.+.+..+
T Consensus 74 v~~~D~G~Y~C~v~~~~~ 91 (105)
T cd00099 74 LQPEDSAVYYCAVSLSGG 91 (105)
T ss_pred CCHHHCEEEEEEEecCCC
Confidence 999999999999887553
No 174
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.51 E-value=2.3e-07 Score=49.45 Aligned_cols=50 Identities=20% Similarity=0.329 Sum_probs=39.7
Q ss_pred ceeeeeecccCCCCcCCCCccEEEEe------eCC--EEecCCceEEEecCCCCCCEEEEEEEEe
Q psy6361 16 IPMHSRYNYTNLPQSRNPGQVIKRYL------KDL--LYVTRNGSFVINNIAEKDTNVYTCTVSN 72 (148)
Q Consensus 16 ~~l~C~~~~~~~p~~~~~~~~~v~W~------~~~--~~~~~~~~l~i~~~~~~d~g~y~C~~~~ 72 (148)
+.|.|.+.+.+.+. .+.|+ ... ........|.+.++..+|.|.|+|.|.|
T Consensus 18 ~~l~C~~~~~~~~~-------~~~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 18 VTLTCSAEGGPPPP-------SISWYDSNPSFNSNSRGSSSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp EEEEEEESSEESSE-------EEEEETEEEEEEEEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred EEEEEEEccccCCe-------EEEEEecCCceeeeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence 89999999998443 79999 111 3334467899999999999999999976
No 175
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=98.51 E-value=1.1e-06 Score=49.27 Aligned_cols=43 Identities=16% Similarity=0.442 Sum_probs=32.6
Q ss_pred CEEEeCCCceEEEecC---CcEEEEeeeecccCCeEEEEECCEEeec
Q psy6361 89 PFFKDEQQESVAIVVN---HPMNISCSHYGVPTPDFSWYKDGSLLRI 132 (148)
Q Consensus 89 p~~~~~~~~~~~~~~g---~~~~l~C~~~g~p~~~~~W~~~g~~l~~ 132 (148)
|.|... |......++ ..+.|.|.+.|.|.|.++|+|++..+..
T Consensus 2 P~f~~~-P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~ 47 (93)
T cd05849 2 PVFEEQ-PIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDL 47 (93)
T ss_pred CEEEEC-CCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEccC
Confidence 555554 555444443 4799999999999999999999998853
No 176
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=98.50 E-value=5e-07 Score=48.57 Aligned_cols=26 Identities=15% Similarity=0.687 Sum_probs=23.7
Q ss_pred EEEEeeeecccCCeEEEEECCEEeec
Q psy6361 107 MNISCSHYGVPTPDFSWYKDGSLLRI 132 (148)
Q Consensus 107 ~~l~C~~~g~p~~~~~W~~~g~~l~~ 132 (148)
+.|.|.+.|.|.|.+.|+|||..+..
T Consensus 1 v~l~C~v~G~P~P~i~W~k~~~~i~~ 26 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRNNEMVQY 26 (75)
T ss_pred CEEEEEEEecCCCeEEEEECCEECcC
Confidence 46899999999999999999999874
No 177
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.50 E-value=2.9e-07 Score=53.73 Aligned_cols=61 Identities=18% Similarity=0.274 Sum_probs=45.1
Q ss_pred ceeeeEeeeccceeeeeecccCCCCcCCCCccEEEEeeCC---------------------EE------ecCCceEEEec
Q psy6361 5 MNVEQAMLLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDL---------------------LY------VTRNGSFVINN 57 (148)
Q Consensus 5 ~~~~~~~~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~---------------------~~------~~~~~~l~i~~ 57 (148)
.....+..|+++.|.|.+....... .+.|||.. +. ......|.|.+
T Consensus 6 ~~~v~~~~G~~v~L~C~~~~~~~~~-------~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~ 78 (116)
T cd07706 6 QPDVSVQVGEEVTLNCRYETSWTNY-------YIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISA 78 (116)
T ss_pred CCceEEcCCCCEEEEEEEeCCCCce-------EEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECC
Confidence 4467799999999999987643222 58899852 11 11234799999
Q ss_pred CCCCCCEEEEEEEEe
Q psy6361 58 IAEKDTNVYTCTVSN 72 (148)
Q Consensus 58 ~~~~d~g~y~C~~~~ 72 (148)
+..+|+|.|.|.+..
T Consensus 79 ~~~~Dsg~Y~C~~~~ 93 (116)
T cd07706 79 LQLEDSAKYFCALST 93 (116)
T ss_pred CCHHHCEEEEEEEEC
Confidence 999999999998874
No 178
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=98.49 E-value=7.4e-07 Score=48.25 Aligned_cols=33 Identities=21% Similarity=0.450 Sum_probs=28.5
Q ss_pred CCcEEEEeeeecccCCeEEEEECCEEeecCCce
Q psy6361 104 NHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHY 136 (148)
Q Consensus 104 g~~~~l~C~~~g~p~~~~~W~~~g~~l~~~~~~ 136 (148)
|+++.|.|.+.|.|.|.+.|++++..+....++
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~ 33 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARV 33 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEECCeECCCCCCE
Confidence 678999999999999999999999888665544
No 179
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=98.48 E-value=1.2e-06 Score=49.16 Aligned_cols=43 Identities=16% Similarity=0.556 Sum_probs=34.4
Q ss_pred CEEEeCCCceEEEecC---CcEEEEeeeecccCCeEEEEECCEEeec
Q psy6361 89 PFFKDEQQESVAIVVN---HPMNISCSHYGVPTPDFSWYKDGSLLRI 132 (148)
Q Consensus 89 p~~~~~~~~~~~~~~g---~~~~l~C~~~g~p~~~~~W~~~g~~l~~ 132 (148)
|.+... |....+.+| +.+.|.|.+.|.|.|.++|++||..+..
T Consensus 2 P~f~~~-P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~ 47 (94)
T cd05850 2 PVFEEQ-PSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKF 47 (94)
T ss_pred CeeEEC-CCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECcc
Confidence 555555 666665555 5799999999999999999999999864
No 180
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=98.48 E-value=2.8e-07 Score=48.40 Aligned_cols=37 Identities=27% Similarity=0.586 Sum_probs=28.1
Q ss_pred EEEEeeeecccCCeEEEEECCEEeecCCceEEEEEEEEe
Q psy6361 107 MNISCSHYGVPTPDFSWYKDGSLLRIQSHYITFFLFFQR 145 (148)
Q Consensus 107 ~~l~C~~~g~p~~~~~W~~~g~~l~~~~~~~~~~l~~~~ 145 (148)
+.|.|.+.|.|.|.+.|||||+++.... ....|.|.+
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~--~~~~L~i~~ 37 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYKDGKLISGKH--SQHSLQIKD 37 (67)
T ss_pred CEEEEEEEEeCCCEEEEEECCEECcccC--CcCEEEECC
Confidence 4689999999999999999999996432 233555544
No 181
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=98.47 E-value=8.4e-07 Score=48.17 Aligned_cols=48 Identities=17% Similarity=0.194 Sum_probs=36.1
Q ss_pred ceEEEecCCcEEEEeeeecccCCeEEEEECCEEeecCCceE--EEEEEEEe
Q psy6361 97 ESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHYI--TFFLFFQR 145 (148)
Q Consensus 97 ~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~g~~l~~~~~~~--~~~l~~~~ 145 (148)
....+.+|+.+.|.|.+.+. .+.+.|+|||.++..+.++. ...|.|..
T Consensus 2 ~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~~~~~L~I~~ 51 (79)
T cd04973 2 ESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRITGEEVQIKD 51 (79)
T ss_pred CcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEEeCCEEEECC
Confidence 45678899999999999886 56899999999987655443 22455544
No 182
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.45 E-value=1.8e-06 Score=46.96 Aligned_cols=64 Identities=16% Similarity=0.154 Sum_probs=41.3
Q ss_pred ceeeeeecccCCCCcCCCCccEEEEeeCCEEec--------------CCceEEEecCCCCCCEEEEEEEEeCCCC-cEEE
Q psy6361 16 IPMHSRYNYTNLPQSRNPGQVIKRYLKDLLYVT--------------RNGSFVINNIAEKDTNVYTCTVSNAAGS-TSKT 80 (148)
Q Consensus 16 ~~l~C~~~~~~~p~~~~~~~~~v~W~~~~~~~~--------------~~~~l~i~~~~~~d~g~y~C~~~~~~~~-~~~~ 80 (148)
+.|.|...+..++. .++||+++.... ....|.+..-...|...|+|.+.|..-. ....
T Consensus 2 ~~L~C~s~gSkP~A-------~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~ 74 (82)
T cd05883 2 IELNCTAMASKPAA-------TIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQ 74 (82)
T ss_pred EEEEEEecCCCCCC-------EEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceee
Confidence 57899999987776 899999981111 1134555444445555799999987643 3444
Q ss_pred EEEEEe
Q psy6361 81 IQMNVL 86 (148)
Q Consensus 81 ~~l~v~ 86 (148)
..|.|.
T Consensus 75 ~~L~V~ 80 (82)
T cd05883 75 RYLEVQ 80 (82)
T ss_pred EEEEEE
Confidence 455543
No 183
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=98.45 E-value=6.4e-07 Score=51.56 Aligned_cols=56 Identities=11% Similarity=0.135 Sum_probs=40.0
Q ss_pred eEeeeccceeeeeecccCCCCcCCCCccEEEEeeCCE-----------------------------E----ecC--CceE
Q psy6361 9 QAMLLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDLL-----------------------------Y----VTR--NGSF 53 (148)
Q Consensus 9 ~~~~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~~-----------------------------~----~~~--~~~l 53 (148)
.+..|+.++|.|.+....... .+.||+... . ... ...|
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~-------~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L 74 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENT-------RIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRL 74 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCC-------eEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEE
Confidence 578899999999987643222 588887520 0 000 1248
Q ss_pred EEecCCCCCCEEEEEEEE
Q psy6361 54 VINNIAEKDTNVYTCTVS 71 (148)
Q Consensus 54 ~i~~~~~~d~g~y~C~~~ 71 (148)
.|.++..+|+|.|.|...
T Consensus 75 ~I~~~~~~Dsg~YyCa~~ 92 (107)
T cd07700 75 HINRVKPEDSGTYFCMTV 92 (107)
T ss_pred EECCCCHHHCEEEEEeEc
Confidence 999999999999999875
No 184
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=98.45 E-value=1.6e-06 Score=47.71 Aligned_cols=51 Identities=25% Similarity=0.428 Sum_probs=38.6
Q ss_pred CceEEEecCCcEEEEeee-ecccCCeEEEEECCEEeecC-CceEE---EEEEEEee
Q psy6361 96 QESVAIVVNHPMNISCSH-YGVPTPDFSWYKDGSLLRIQ-SHYIT---FFLFFQRL 146 (148)
Q Consensus 96 ~~~~~~~~g~~~~l~C~~-~g~p~~~~~W~~~g~~l~~~-~~~~~---~~l~~~~~ 146 (148)
|....+.+|+++.|.|.+ .|.|.|.+.|+|+|..+... .++.. ..|.|..+
T Consensus 3 p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~~L~I~~~ 58 (86)
T cd05724 3 PSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVDDGNLLIAEA 58 (86)
T ss_pred CccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEccCCEEEEeEC
Confidence 566788899999999997 78999999999999988763 23322 24666543
No 185
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=98.44 E-value=7.1e-07 Score=48.06 Aligned_cols=30 Identities=23% Similarity=0.660 Sum_probs=27.0
Q ss_pred CCcEEEEeeeecccCCeEEEEECCEEeecC
Q psy6361 104 NHPMNISCSHYGVPTPDFSWYKDGSLLRIQ 133 (148)
Q Consensus 104 g~~~~l~C~~~g~p~~~~~W~~~g~~l~~~ 133 (148)
|+.+.|.|.+.|.|.|.++|+++|.++...
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~ 30 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSINGAPIEGT 30 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEECCEECCCC
Confidence 678999999999999999999999988653
No 186
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=98.44 E-value=3.3e-06 Score=47.52 Aligned_cols=32 Identities=34% Similarity=0.562 Sum_probs=25.0
Q ss_pred CceEEEecCCCCCCEEEEEEEEeC-CCCcEEEE
Q psy6361 50 NGSFVINNIAEKDTNVYTCTVSNA-AGSTSKTI 81 (148)
Q Consensus 50 ~~~l~i~~~~~~d~g~y~C~~~~~-~~~~~~~~ 81 (148)
+.+|.|.+++.+|+|.|.|.+... .|.....+
T Consensus 59 d~sI~i~nvt~~D~G~Y~C~~~t~P~g~~~~~i 91 (96)
T cd05889 59 DMSLSFNNATEEDVGLYCCSLVTYPQGSWEKVI 91 (96)
T ss_pred ccEEEEcCCCcccCEEEEEEEEeCCCCCeEEEE
Confidence 478999999999999999998764 44444443
No 187
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.42 E-value=1.2e-06 Score=46.69 Aligned_cols=43 Identities=26% Similarity=0.332 Sum_probs=33.3
Q ss_pred CCcEEEEeeeecccCCeEEEEECCEEeecCCceEE---EEEEEEee
Q psy6361 104 NHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHYIT---FFLFFQRL 146 (148)
Q Consensus 104 g~~~~l~C~~~g~p~~~~~W~~~g~~l~~~~~~~~---~~l~~~~~ 146 (148)
|+.+.|.|.+.|.|.|.+.|++++..+....++.. ..|.|..+
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v 46 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWPDGSLEILNV 46 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEECCCCeEEEccC
Confidence 67899999999999999999999998876555442 24655543
No 188
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.41 E-value=4e-06 Score=47.40 Aligned_cols=44 Identities=16% Similarity=0.430 Sum_probs=35.2
Q ss_pred CCEEEeCCCceEEEecCCcEEEEeeeecccCC-eEEEEECCEEeecC
Q psy6361 88 PPFFKDEQQESVAIVVNHPMNISCSHYGVPTP-DFSWYKDGSLLRIQ 133 (148)
Q Consensus 88 ~p~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~-~~~W~~~g~~l~~~ 133 (148)
+|.+. . +....+.+|+.+.|.|.+.|.|.| .+.|++++..+...
T Consensus 2 pp~i~-~-~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~ 46 (98)
T cd05758 2 PPIIT-S-EATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESG 46 (98)
T ss_pred CCeEc-C-CCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCC
Confidence 34443 3 445678899999999999999999 69999999988653
No 189
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=98.40 E-value=6.5e-07 Score=47.44 Aligned_cols=40 Identities=28% Similarity=0.703 Sum_probs=29.7
Q ss_pred EEEEeeeecccCCeEEEEECCEEeecCCceEE-EEEEEEee
Q psy6361 107 MNISCSHYGVPTPDFSWYKDGSLLRIQSHYIT-FFLFFQRL 146 (148)
Q Consensus 107 ~~l~C~~~g~p~~~~~W~~~g~~l~~~~~~~~-~~l~~~~~ 146 (148)
+.+.|.+.|.|.|.+.|+|||+++..+.++.. ..|.|.++
T Consensus 1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~~~~~~~~L~I~~v 41 (70)
T cd05864 1 VKIPVKYYGYPPPEVKWYKNGQLIVLNHTFKRGVHLTIYEV 41 (70)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEEccCCEEEECcC
Confidence 36889999999999999999999976544322 24555543
No 190
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=98.40 E-value=1.2e-06 Score=47.25 Aligned_cols=29 Identities=28% Similarity=0.662 Sum_probs=26.5
Q ss_pred CCcEEEEeeeecccCCeEEEEECCEEeec
Q psy6361 104 NHPMNISCSHYGVPTPDFSWYKDGSLLRI 132 (148)
Q Consensus 104 g~~~~l~C~~~g~p~~~~~W~~~g~~l~~ 132 (148)
|+.+.|.|.+.|.|.|.++|+|||.++..
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~ 29 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNGVPIEI 29 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECCEEccc
Confidence 57899999999999999999999999864
No 191
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=98.39 E-value=1.7e-06 Score=48.62 Aligned_cols=43 Identities=19% Similarity=0.396 Sum_probs=35.0
Q ss_pred CCEEEeCCCceEEEecCCcEEEEeeeecccCCeEEEEECCEEeec
Q psy6361 88 PPFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRI 132 (148)
Q Consensus 88 ~p~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~g~~l~~ 132 (148)
+|.+.. +....+.+|+.+.|.|.+.|.|.|.+.|++++..+..
T Consensus 2 ~P~i~~--~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~ 44 (96)
T cd05732 2 QPKITY--LENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSE 44 (96)
T ss_pred Ccccee--cCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCC
Confidence 466653 3467888999999999999999999999999866543
No 192
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=98.39 E-value=1.3e-06 Score=47.00 Aligned_cols=26 Identities=31% Similarity=0.698 Sum_probs=23.6
Q ss_pred EEEEeeeecccCCeEEEEECCEEeec
Q psy6361 107 MNISCSHYGVPTPDFSWYKDGSLLRI 132 (148)
Q Consensus 107 ~~l~C~~~g~p~~~~~W~~~g~~l~~ 132 (148)
+.|.|.+.|.|.|.+.|+|++..+..
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~~l~~ 26 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENESLTH 26 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCEECCC
Confidence 46899999999999999999998864
No 193
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=98.38 E-value=4.3e-06 Score=46.73 Aligned_cols=50 Identities=18% Similarity=0.381 Sum_probs=38.6
Q ss_pred CceEEEecCCcEEEEeeeecccCCeEEEEE-CCEEeecCCceEEE------EEEEEee
Q psy6361 96 QESVAIVVNHPMNISCSHYGVPTPDFSWYK-DGSLLRIQSHYITF------FLFFQRL 146 (148)
Q Consensus 96 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~-~g~~l~~~~~~~~~------~l~~~~~ 146 (148)
+....+.+|+.+.|.|.+.|.|. .+.|++ ++..+....++... .|.|.++
T Consensus 7 ~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v 63 (92)
T cd05866 7 LSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNA 63 (92)
T ss_pred ecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecC
Confidence 55677889999999999999997 899998 57777665555432 5777665
No 194
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=98.37 E-value=2.7e-06 Score=47.47 Aligned_cols=37 Identities=24% Similarity=0.416 Sum_probs=32.1
Q ss_pred CceEEEecCCcEEEEeeeecccCCeEEEEECCEEeecC
Q psy6361 96 QESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQ 133 (148)
Q Consensus 96 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~g~~l~~~ 133 (148)
+....+.+|+.+.|.|.+.|. .|.+.|++++..+...
T Consensus 10 ~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~ 46 (91)
T cd05740 10 VGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPP 46 (91)
T ss_pred cCccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCC
Confidence 445688899999999999999 9999999999887643
No 195
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.36 E-value=1.1e-06 Score=49.29 Aligned_cols=56 Identities=11% Similarity=0.090 Sum_probs=42.0
Q ss_pred eeeEeeeccceeeeeecccCCCCcCCCCccEEEEeeCCE-----Ee------cCCceEEEecCCCCCCEEEEEEEE
Q psy6361 7 VEQAMLLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDLL-----YV------TRNGSFVINNIAEKDTNVYTCTVS 71 (148)
Q Consensus 7 ~~~~~~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~~-----~~------~~~~~l~i~~~~~~d~g~y~C~~~ 71 (148)
...+..|++|+|.|.... ..- .+.|+|++. .. .....+.|.+++.+|+|.|.|...
T Consensus 9 ~~vV~~G~~VTL~C~~~~-~~~--------~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~ 75 (94)
T cd05711 9 SPVVPSGENVTLQCHSDI-RFD--------RFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGS 75 (94)
T ss_pred CCccCCCCeEEEEEecCC-CCC--------EEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEE
Confidence 346778999999998765 222 699999871 11 123467999999999999999875
No 196
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=98.36 E-value=3.4e-06 Score=47.56 Aligned_cols=37 Identities=24% Similarity=0.418 Sum_probs=31.1
Q ss_pred CceEEEecCCcEEEEeeeecccC-CeEEEEE-CCEEeec
Q psy6361 96 QESVAIVVNHPMNISCSHYGVPT-PDFSWYK-DGSLLRI 132 (148)
Q Consensus 96 ~~~~~~~~g~~~~l~C~~~g~p~-~~~~W~~-~g~~l~~ 132 (148)
|....+..|+.+.|.|.+.|.|. |.++|++ ||..+..
T Consensus 7 p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~ 45 (96)
T cd05865 7 PSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTP 45 (96)
T ss_pred CCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccc
Confidence 55667889999999999999985 7999998 8876654
No 197
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=98.34 E-value=5.5e-06 Score=46.85 Aligned_cols=41 Identities=27% Similarity=0.601 Sum_probs=33.0
Q ss_pred CCEEEeCCCceEEEecCCcEEEEeeeecccCCeEEEEE--CCEEe
Q psy6361 88 PPFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYK--DGSLL 130 (148)
Q Consensus 88 ~p~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~--~g~~l 130 (148)
+|.+.. +.+..+.+|+.+.|.|.+.|.|.|.+.|++ +|..+
T Consensus 2 ~p~i~~--~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~ 44 (98)
T cd05870 2 QPHIIQ--LKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTF 44 (98)
T ss_pred CCEEEe--eccEEEcCCCcEEEEEecccCCCCeEEEEECCCCcee
Confidence 455543 456888899999999999999999999998 45444
No 198
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=98.34 E-value=1.3e-06 Score=46.43 Aligned_cols=39 Identities=21% Similarity=0.485 Sum_probs=29.1
Q ss_pred EEEEeeeecccCCeEEEEECCEEeecCCceE--EEEEEEEe
Q psy6361 107 MNISCSHYGVPTPDFSWYKDGSLLRIQSHYI--TFFLFFQR 145 (148)
Q Consensus 107 ~~l~C~~~g~p~~~~~W~~~g~~l~~~~~~~--~~~l~~~~ 145 (148)
+.|.|.+.|.|.|.+.|+|||..+..+.++. ...|.|..
T Consensus 1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~~~~~~~L~I~~ 41 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRTKKSGHSLTIKD 41 (71)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEEEcCCCEEEECc
Confidence 4689999999999999999999987654332 22455544
No 199
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=98.34 E-value=3.5e-06 Score=48.62 Aligned_cols=45 Identities=24% Similarity=0.498 Sum_probs=33.2
Q ss_pred cCCEEEeCCCceEEE-e---cCCcEEEEeeeecccCCeEEEEECCEEeec
Q psy6361 87 VPPFFKDEQQESVAI-V---VNHPMNISCSHYGVPTPDFSWYKDGSLLRI 132 (148)
Q Consensus 87 ~~p~~~~~~~~~~~~-~---~g~~~~l~C~~~g~p~~~~~W~~~g~~l~~ 132 (148)
.+|.+... +....+ . .|..+.|.|.+.|.|.|.+.|+|||..+..
T Consensus 3 ~~P~~~~~-~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~ 51 (109)
T cd05773 3 FAPDLQKG-PQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAKNGVPLDL 51 (109)
T ss_pred cccccccC-CceEEEEEecCCCCEEEEEEECcccCCCEEEEEECCEECCC
Confidence 45666555 432222 2 346899999999999999999999998864
No 200
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=98.32 E-value=2.4e-06 Score=45.37 Aligned_cols=32 Identities=25% Similarity=0.590 Sum_probs=26.8
Q ss_pred cEEEEeeeecccCCeEEEEECCEEeecCCceE
Q psy6361 106 PMNISCSHYGVPTPDFSWYKDGSLLRIQSHYI 137 (148)
Q Consensus 106 ~~~l~C~~~g~p~~~~~W~~~g~~l~~~~~~~ 137 (148)
.+.|.|.+.|.|.|.++|+|+|..+....++.
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~ 32 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFK 32 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEECCeECCCCCCEE
Confidence 47899999999999999999999887655433
No 201
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=98.30 E-value=2.6e-06 Score=45.32 Aligned_cols=40 Identities=23% Similarity=0.448 Sum_probs=29.5
Q ss_pred EEEEeeeecccCCeEEEEECCEEeecC-CceE--EEEEEEEee
Q psy6361 107 MNISCSHYGVPTPDFSWYKDGSLLRIQ-SHYI--TFFLFFQRL 146 (148)
Q Consensus 107 ~~l~C~~~g~p~~~~~W~~~g~~l~~~-~~~~--~~~l~~~~~ 146 (148)
+.|.|.+.|.|.|.+.|+|||.++... .++. ...|.|.++
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~L~I~~v 43 (72)
T cd07702 1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCSRYHVDGYSLVIKDV 43 (72)
T ss_pred CeEEeeEEEcCCCeEEEEECCEECCCCCcEEEeCCCEEEECcC
Confidence 368999999999999999999998754 2222 225666554
No 202
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=98.28 E-value=7.3e-06 Score=48.06 Aligned_cols=66 Identities=14% Similarity=0.097 Sum_probs=43.9
Q ss_pred eeeeEeeeccceeeeeecccCCCCcCCCCccEEEEeeCC------------------------EE------ecCCceEEE
Q psy6361 6 NVEQAMLLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDL------------------------LY------VTRNGSFVI 55 (148)
Q Consensus 6 ~~~~~~~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~------------------------~~------~~~~~~l~i 55 (148)
....+..|+.+.|.|........ ..+....+.||+.. +. ...+..|.|
T Consensus 7 ~~v~~~~G~~VtL~C~f~~~~~~--~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I 84 (119)
T cd05712 7 KSVSVQEGLCVLIPCSFSYPADW--PVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLI 84 (119)
T ss_pred CEEEEeccccEEEEEEeeCcccc--cCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEE
Confidence 34688999999999987543210 00011258898763 00 111247999
Q ss_pred ecCCCCCCEEEEEEEEeC
Q psy6361 56 NNIAEKDTNVYTCTVSNA 73 (148)
Q Consensus 56 ~~~~~~d~g~y~C~~~~~ 73 (148)
.+++.+|+|.|.|.+...
T Consensus 85 ~~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 85 SDAQPEDSGKYFFRVELG 102 (119)
T ss_pred ccCChhhCeEEEEEEEcC
Confidence 999999999999987653
No 203
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=98.28 E-value=1.9e-06 Score=45.50 Aligned_cols=40 Identities=28% Similarity=0.620 Sum_probs=30.0
Q ss_pred EEEEeeeecccCCeEEEEECCEEeecCCceEEE---EEEEEee
Q psy6361 107 MNISCSHYGVPTPDFSWYKDGSLLRIQSHYITF---FLFFQRL 146 (148)
Q Consensus 107 ~~l~C~~~g~p~~~~~W~~~g~~l~~~~~~~~~---~l~~~~~ 146 (148)
+.|.|.+.|.|.|.+.|+|+|..+....++... .|.|..+
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~~ 43 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISPEGYLAIRDV 43 (69)
T ss_pred CEeEecceEeCCCEEEEEECCEECCCCCCEEECCCCEEEECcC
Confidence 468999999999999999999988765544322 4555443
No 204
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=98.27 E-value=4.4e-06 Score=44.62 Aligned_cols=32 Identities=28% Similarity=0.603 Sum_probs=26.7
Q ss_pred cEEEEeeeecccCCeEEEEECCEEeecCCceE
Q psy6361 106 PMNISCSHYGVPTPDFSWYKDGSLLRIQSHYI 137 (148)
Q Consensus 106 ~~~l~C~~~g~p~~~~~W~~~g~~l~~~~~~~ 137 (148)
.+.|.|.+.|.|.|.+.|+|+|..+....++.
T Consensus 1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~ 32 (74)
T cd05748 1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQ 32 (74)
T ss_pred CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEE
Confidence 36899999999999999999999986554443
No 205
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=98.27 E-value=3.7e-06 Score=45.16 Aligned_cols=26 Identities=23% Similarity=0.696 Sum_probs=23.6
Q ss_pred EEEEeeeecccCCeEEEEECCEEeec
Q psy6361 107 MNISCSHYGVPTPDFSWYKDGSLLRI 132 (148)
Q Consensus 107 ~~l~C~~~g~p~~~~~W~~~g~~l~~ 132 (148)
+.|.|.+.|.|.|.+.|+|+|..+..
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~~~i~~ 26 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNNEMLTY 26 (75)
T ss_pred CEEEEEEeecCCCeEEEEECCEECCC
Confidence 46899999999999999999999874
No 206
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=98.27 E-value=8.3e-06 Score=45.03 Aligned_cols=37 Identities=16% Similarity=0.331 Sum_probs=31.9
Q ss_pred CceEEEecCCcEEEEeeeecccCCeEEEEECCEEeecC
Q psy6361 96 QESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQ 133 (148)
Q Consensus 96 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~g~~l~~~ 133 (148)
|....+..|+++.|.|.+.+ +.+.+.|++||.++..+
T Consensus 3 P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~ 39 (87)
T cd05873 3 PRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPE 39 (87)
T ss_pred cceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCC
Confidence 56778899999999999754 67899999999999765
No 207
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=98.25 E-value=4.4e-06 Score=45.08 Aligned_cols=28 Identities=29% Similarity=0.805 Sum_probs=24.4
Q ss_pred EEEEeeeecccCCeEEEEECCEEeecCC
Q psy6361 107 MNISCSHYGVPTPDFSWYKDGSLLRIQS 134 (148)
Q Consensus 107 ~~l~C~~~g~p~~~~~W~~~g~~l~~~~ 134 (148)
+.|.|.+.|.|.|.+.|+|+|.++....
T Consensus 1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~ 28 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQ 28 (77)
T ss_pred CEEEEEeeecCCCcEEEEECCEECCCCC
Confidence 4789999999999999999999986543
No 208
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=98.25 E-value=3.8e-06 Score=45.52 Aligned_cols=28 Identities=25% Similarity=0.643 Sum_probs=24.1
Q ss_pred EEEeeeecccCCeEEEEECCEEeecCCc
Q psy6361 108 NISCSHYGVPTPDFSWYKDGSLLRIQSH 135 (148)
Q Consensus 108 ~l~C~~~g~p~~~~~W~~~g~~l~~~~~ 135 (148)
.+.|.+.|.|.|.++|||||.+|..+.+
T Consensus 2 ~i~~~v~G~P~Pti~W~kng~~l~~~~~ 29 (79)
T cd05855 2 CIPFTVKGNPKPTLQWFHEGAILNESEY 29 (79)
T ss_pred eEEEEEeEeCCCceEEEECCEECCCCcc
Confidence 3678899999999999999999976554
No 209
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=98.24 E-value=8.5e-06 Score=45.39 Aligned_cols=42 Identities=19% Similarity=0.653 Sum_probs=31.7
Q ss_pred CEEEeCCCceEEEec---CCcEEEEeeeecccCCeEEEEECCEEee
Q psy6361 89 PFFKDEQQESVAIVV---NHPMNISCSHYGVPTPDFSWYKDGSLLR 131 (148)
Q Consensus 89 p~~~~~~~~~~~~~~---g~~~~l~C~~~g~p~~~~~W~~~g~~l~ 131 (148)
|.|... +......+ +..+.|.|.+.|.|.|.++|++++..+.
T Consensus 2 P~f~~~-p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~ 46 (91)
T cd04967 2 PVFEEQ-PDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEID 46 (91)
T ss_pred CeeEeC-CCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEECCEECC
Confidence 455544 45444333 3569999999999999999999999884
No 210
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=98.22 E-value=4.2e-06 Score=44.77 Aligned_cols=25 Identities=28% Similarity=0.720 Sum_probs=22.8
Q ss_pred EEEEeeeecccCCeEEEEECCEEee
Q psy6361 107 MNISCSHYGVPTPDFSWYKDGSLLR 131 (148)
Q Consensus 107 ~~l~C~~~g~p~~~~~W~~~g~~l~ 131 (148)
+.|.|.+.|.|.|.+.|+|++..+.
T Consensus 1 a~l~C~~~G~P~p~v~W~k~~~~~~ 25 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKDFLPVD 25 (74)
T ss_pred CEEEEEEeEecCCEEEEEECCEECc
Confidence 4689999999999999999999886
No 211
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=98.21 E-value=5.4e-06 Score=45.21 Aligned_cols=28 Identities=29% Similarity=0.680 Sum_probs=24.4
Q ss_pred EEEeeeecccCCeEEEEECCEEeecCCc
Q psy6361 108 NISCSHYGVPTPDFSWYKDGSLLRIQSH 135 (148)
Q Consensus 108 ~l~C~~~g~p~~~~~W~~~g~~l~~~~~ 135 (148)
.+.|.+.|.|.|.++|||||..+..+..
T Consensus 2 ~i~~~v~G~P~P~v~W~k~g~~i~~~~~ 29 (81)
T cd04971 2 CIPFTVRGNPKPTLTWYHNGAVLNESDY 29 (81)
T ss_pred eEEEEeEeeCCCcEEEEECCEECcCCCc
Confidence 4689999999999999999999987653
No 212
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=98.20 E-value=4e-06 Score=45.54 Aligned_cols=48 Identities=27% Similarity=0.476 Sum_probs=35.1
Q ss_pred EEEecCCcEEEEeeeecccCCeEEEEECCEEeecCCce----EEEEEEEEee
Q psy6361 99 VAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHY----ITFFLFFQRL 146 (148)
Q Consensus 99 ~~~~~g~~~~l~C~~~g~p~~~~~W~~~g~~l~~~~~~----~~~~l~~~~~ 146 (148)
.....|+.+.|.|.+.|.|.|.+.|+++|..+...... ....|.|..+
T Consensus 4 ~~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~L~i~~v 55 (82)
T cd05856 4 IARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNL 55 (82)
T ss_pred eeccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccceecCceEEEEEccC
Confidence 34567899999999999999999999999887543222 1245665543
No 213
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.20 E-value=3.2e-06 Score=45.32 Aligned_cols=31 Identities=19% Similarity=0.557 Sum_probs=27.4
Q ss_pred CCcEEEEeeeecccCCeEEEEECCEEeecCC
Q psy6361 104 NHPMNISCSHYGVPTPDFSWYKDGSLLRIQS 134 (148)
Q Consensus 104 g~~~~l~C~~~g~p~~~~~W~~~g~~l~~~~ 134 (148)
|+.+.|.|.+.|.|.|.+.|+++|..+....
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~ 31 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELP 31 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEECCEECCCCC
Confidence 6789999999999999999999999886543
No 214
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=98.15 E-value=5.3e-06 Score=47.48 Aligned_cols=55 Identities=13% Similarity=0.198 Sum_probs=38.9
Q ss_pred eEeeeccceeeeeecccCCCCcCCCCccEEEEeeCC-----------------------------EE----ecCCceEEE
Q psy6361 9 QAMLLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDL-----------------------------LY----VTRNGSFVI 55 (148)
Q Consensus 9 ~~~~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~-----------------------------~~----~~~~~~l~i 55 (148)
.+..|+.++|.|.+...... .+.||+.. +. ......|.|
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~--------~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I 73 (104)
T cd05720 2 DAELGQKVELKCEVLNSSPT--------GCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTL 73 (104)
T ss_pred cccCCCeEEEEEEecCCCCC--------cEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEE
Confidence 46789999999998655322 47777742 00 011235899
Q ss_pred ecCCCCCCEEEEEEEE
Q psy6361 56 NNIAEKDTNVYTCTVS 71 (148)
Q Consensus 56 ~~~~~~d~g~y~C~~~ 71 (148)
.++..+|+|.|.|...
T Consensus 74 ~~~~~sDsgtY~Ca~~ 89 (104)
T cd05720 74 KNFQKENEGYYFCSVA 89 (104)
T ss_pred CCCCHHHCEEEEEEEc
Confidence 9999999999999865
No 215
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=98.15 E-value=9.5e-06 Score=43.79 Aligned_cols=25 Identities=32% Similarity=0.902 Sum_probs=22.3
Q ss_pred EEEEeeeecccCCeEEEEECCEEee
Q psy6361 107 MNISCSHYGVPTPDFSWYKDGSLLR 131 (148)
Q Consensus 107 ~~l~C~~~g~p~~~~~W~~~g~~l~ 131 (148)
+.|.|.+.|.|.|.++|+|||..+.
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~g~~~~ 25 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRNGKFFN 25 (77)
T ss_pred CEEEEeccccCCCEEEEEECCEEcc
Confidence 3689999999999999999998763
No 216
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=98.12 E-value=2.7e-05 Score=42.65 Aligned_cols=54 Identities=15% Similarity=0.137 Sum_probs=34.3
Q ss_pred ceeeeeecccCCCCcCCCCccEEEEeeCCEEe---------cCC-ceE------EEecCCCCCCEEEEEEEEeCCCC
Q psy6361 16 IPMHSRYNYTNLPQSRNPGQVIKRYLKDLLYV---------TRN-GSF------VINNIAEKDTNVYTCTVSNAAGS 76 (148)
Q Consensus 16 ~~l~C~~~~~~~p~~~~~~~~~v~W~~~~~~~---------~~~-~~l------~i~~~~~~d~g~y~C~~~~~~~~ 76 (148)
+.|.|.+.+..++. .++|++++... ... ..+ .+......+...|+|.+.+....
T Consensus 2 ~~LtC~a~g~~P~~-------~ItW~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~ 71 (83)
T cd07705 2 AKLRCTSSGSKPAA-------NIKWRKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLH 71 (83)
T ss_pred EEEEEEecCccCCC-------EeEEEECCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccC
Confidence 57899999885554 79999997211 111 222 22233344557899999987643
No 217
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.12 E-value=4.7e-06 Score=46.69 Aligned_cols=58 Identities=14% Similarity=0.168 Sum_probs=39.4
Q ss_pred eeeccceeeeeeccc-CCCCcCCCCccEEEEeeCCEEe-----------cCCc------eEEEecCCCCCCEEEEEEEEe
Q psy6361 11 MLLDLIPMHSRYNYT-NLPQSRNPGQVIKRYLKDLLYV-----------TRNG------SFVINNIAEKDTNVYTCTVSN 72 (148)
Q Consensus 11 ~~g~~~~l~C~~~~~-~~p~~~~~~~~~v~W~~~~~~~-----------~~~~------~l~i~~~~~~d~g~y~C~~~~ 72 (148)
..|+.+.|.|.+.+. |.+. .++|++++... ..+. .|.+......+.+.|+|.+.+
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~-------~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h 83 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDI-------TVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTH 83 (95)
T ss_pred HcCCCeEEEEEEeeEECCCc-------EEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEe
Confidence 367889999999998 4343 79999997111 1111 234444444588999999988
Q ss_pred CCC
Q psy6361 73 AAG 75 (148)
Q Consensus 73 ~~~ 75 (148)
...
T Consensus 84 ~~~ 86 (95)
T cd00098 84 ESL 86 (95)
T ss_pred CCC
Confidence 665
No 218
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=98.08 E-value=4.9e-06 Score=44.93 Aligned_cols=25 Identities=36% Similarity=0.910 Sum_probs=22.6
Q ss_pred EEEEeeeecccCCeEEEEECCEEee
Q psy6361 107 MNISCSHYGVPTPDFSWYKDGSLLR 131 (148)
Q Consensus 107 ~~l~C~~~g~p~~~~~W~~~g~~l~ 131 (148)
+.|.|.+.|.|.|.++|+|||..+.
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g~~l~ 25 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNGTHFD 25 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECC
Confidence 4689999999999999999999874
No 219
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=98.08 E-value=4.4e-05 Score=42.65 Aligned_cols=50 Identities=24% Similarity=0.348 Sum_probs=36.3
Q ss_pred CceEEEecCCcEEEEeeeecccCCeEEEEE-CCEEeecCCceEE-------EEEEEEee
Q psy6361 96 QESVAIVVNHPMNISCSHYGVPTPDFSWYK-DGSLLRIQSHYIT-------FFLFFQRL 146 (148)
Q Consensus 96 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~-~g~~l~~~~~~~~-------~~l~~~~~ 146 (148)
|....+..|+.+.|.|.+.|.| +.+.|++ ++..+....++.. ..|.|..+
T Consensus 7 p~~~~v~~G~~~~l~C~~~G~p-~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v 64 (92)
T cd04977 7 PSQGEISVGESKFFLCQVIGEP-KDISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNA 64 (92)
T ss_pred cCcEEECCCCeEEEEEEeEeeC-CeEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecC
Confidence 5667788999999999999987 4999997 6776655333321 25666654
No 220
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=98.05 E-value=7.5e-06 Score=44.16 Aligned_cols=26 Identities=35% Similarity=0.828 Sum_probs=23.1
Q ss_pred EEEEeeeecccCCeEEEEECCEEeec
Q psy6361 107 MNISCSHYGVPTPDFSWYKDGSLLRI 132 (148)
Q Consensus 107 ~~l~C~~~g~p~~~~~W~~~g~~l~~ 132 (148)
+.|.|.+.|.|.|.++|+|||..+..
T Consensus 1 i~l~C~~~G~P~P~v~W~k~g~~l~~ 26 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRNGTHFDP 26 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCC
Confidence 46899999999999999999998854
No 221
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=98.04 E-value=3e-05 Score=42.96 Aligned_cols=30 Identities=17% Similarity=0.392 Sum_probs=26.7
Q ss_pred CCcEEEEeeeecccCCeEEEEECCEEeecC
Q psy6361 104 NHPMNISCSHYGVPTPDFSWYKDGSLLRIQ 133 (148)
Q Consensus 104 g~~~~l~C~~~g~p~~~~~W~~~g~~l~~~ 133 (148)
|+.+.|.|.+.|.|.+.+.|+|++..+...
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~ 30 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPE 30 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCCEECCCC
Confidence 678999999999999999999999888643
No 222
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.02 E-value=4.4e-05 Score=41.68 Aligned_cols=54 Identities=15% Similarity=0.129 Sum_probs=33.0
Q ss_pred ceeeeeecccCCCCcCCCCccEEEEeeCCEEec---------CCc------eEEEecCCCCCCEEEEEEEEeCCCC
Q psy6361 16 IPMHSRYNYTNLPQSRNPGQVIKRYLKDLLYVT---------RNG------SFVINNIAEKDTNVYTCTVSNAAGS 76 (148)
Q Consensus 16 ~~l~C~~~~~~~p~~~~~~~~~v~W~~~~~~~~---------~~~------~l~i~~~~~~d~g~y~C~~~~~~~~ 76 (148)
+.|.|.+.+..++. .++|++++.... .+. .|.+......+.+.|+|.+.+....
T Consensus 2 ~~L~C~~~~~~P~~-------~v~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~ 70 (82)
T cd05761 2 VELTCTSSGSKPAA-------TIRWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK 70 (82)
T ss_pred EEEEEEecCcCcCC-------eEEEEECCEEccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence 57899998874443 799999972211 111 2222223334456899999887643
No 223
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=98.01 E-value=1.4e-05 Score=42.33 Aligned_cols=26 Identities=27% Similarity=0.618 Sum_probs=22.8
Q ss_pred EEEEeeeecccCCeEEEEECCEEeec
Q psy6361 107 MNISCSHYGVPTPDFSWYKDGSLLRI 132 (148)
Q Consensus 107 ~~l~C~~~g~p~~~~~W~~~g~~l~~ 132 (148)
+.|.|.+.|.|.|.+.|+|++..+..
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~~~~ 26 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGPLSP 26 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcCCCC
Confidence 46899999999999999999887754
No 224
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=98.01 E-value=1.3e-05 Score=42.79 Aligned_cols=29 Identities=28% Similarity=0.706 Sum_probs=24.5
Q ss_pred EEEEeeeec-ccCCeEEEEECCEEeecCCc
Q psy6361 107 MNISCSHYG-VPTPDFSWYKDGSLLRIQSH 135 (148)
Q Consensus 107 ~~l~C~~~g-~p~~~~~W~~~g~~l~~~~~ 135 (148)
+.|.|.+.| .|.|.+.|+|+|..+....+
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~ 30 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKELNRKNK 30 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCeeccccCC
Confidence 368999999 99999999999998876543
No 225
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=98.00 E-value=1.8e-05 Score=46.27 Aligned_cols=59 Identities=12% Similarity=0.136 Sum_probs=41.7
Q ss_pred eeeEeeeccceeeeeecccCC-CCcCCCCccEEEEeeCC--------------------------EE----ec--CCceE
Q psy6361 7 VEQAMLLDLIPMHSRYNYTNL-PQSRNPGQVIKRYLKDL--------------------------LY----VT--RNGSF 53 (148)
Q Consensus 7 ~~~~~~g~~~~l~C~~~~~~~-p~~~~~~~~~v~W~~~~--------------------------~~----~~--~~~~l 53 (148)
...+..|+.++|.|....... .. .+.|||.. +. .. ....|
T Consensus 6 ~~~v~~G~~vtL~C~~~~~~~~~~-------~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L 78 (117)
T cd04981 6 PGLVKPGQSLKLSCKASGFTFTSY-------GVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYL 78 (117)
T ss_pred CeEEcCCCCEEEEEEEeCCCcccc-------eEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEE
Confidence 467889999999998765431 11 47888863 00 00 11268
Q ss_pred EEecCCCCCCEEEEEEEEe
Q psy6361 54 VINNIAEKDTNVYTCTVSN 72 (148)
Q Consensus 54 ~i~~~~~~d~g~y~C~~~~ 72 (148)
.|.++..+|+|.|.|....
T Consensus 79 ~I~~~~~~Dsa~YyCa~~~ 97 (117)
T cd04981 79 QLNSLTPEDTAVYYCARGL 97 (117)
T ss_pred EECCCCHHHCEEEEEEEEc
Confidence 9999999999999998754
No 226
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.00 E-value=5.4e-05 Score=40.34 Aligned_cols=32 Identities=28% Similarity=0.659 Sum_probs=26.2
Q ss_pred CCcEEEEeeeecccCCeEEEEE-CCEEeecCCc
Q psy6361 104 NHPMNISCSHYGVPTPDFSWYK-DGSLLRIQSH 135 (148)
Q Consensus 104 g~~~~l~C~~~g~p~~~~~W~~-~g~~l~~~~~ 135 (148)
|+.+.|.|.+.|.|.|.+.|++ ++..+....+
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~ 33 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSR 33 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCe
Confidence 6789999999999999999997 6776655443
No 227
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=97.98 E-value=3.7e-05 Score=42.10 Aligned_cols=53 Identities=9% Similarity=0.113 Sum_probs=33.6
Q ss_pred ceeeeeecccCCCCcCCCCccEEEEeeCCEEec----------CC------ceEEEecCCCCCCEEEEEEEEeCCC
Q psy6361 16 IPMHSRYNYTNLPQSRNPGQVIKRYLKDLLYVT----------RN------GSFVINNIAEKDTNVYTCTVSNAAG 75 (148)
Q Consensus 16 ~~l~C~~~~~~~p~~~~~~~~~v~W~~~~~~~~----------~~------~~l~i~~~~~~d~g~y~C~~~~~~~ 75 (148)
+.|.|.+.+..++. .++|+|++.... .+ ..|.+..-...+...|+|.+.+...
T Consensus 2 ~~LtC~a~gf~P~~-------~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l 70 (83)
T cd05884 2 MQLTCKTSGSKPAA-------DIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESL 70 (83)
T ss_pred EEEEEEeCCccCCC-------EEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhc
Confidence 57899998876555 899999982211 11 1333433334445679999987654
No 228
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=97.98 E-value=5.2e-05 Score=40.71 Aligned_cols=43 Identities=26% Similarity=0.649 Sum_probs=34.4
Q ss_pred CEEEeCCCceEEEecCCcEEEEeeeecccCCeEEEEECCEEeecCC
Q psy6361 89 PFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQS 134 (148)
Q Consensus 89 p~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~g~~l~~~~ 134 (148)
|.+... ...+.+|+.+.|.|.+.+.|.+.+.|++++..+....
T Consensus 2 P~l~~~---~~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~ 44 (80)
T PF13895_consen 2 PVLSSS---PQSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSSQ 44 (80)
T ss_dssp -EEEEE---SSEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEES
T ss_pred cEEEcc---ceEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeeee
Confidence 445533 3568899999999999998889999999998887543
No 229
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=97.98 E-value=2.8e-05 Score=42.68 Aligned_cols=51 Identities=14% Similarity=0.217 Sum_probs=35.9
Q ss_pred CceEEEecCCcEEEEeeeec-ccCCeEEEEECCEEeecCCceEEEEEEEEee
Q psy6361 96 QESVAIVVNHPMNISCSHYG-VPTPDFSWYKDGSLLRIQSHYITFFLFFQRL 146 (148)
Q Consensus 96 ~~~~~~~~g~~~~l~C~~~g-~p~~~~~W~~~g~~l~~~~~~~~~~l~~~~~ 146 (148)
|....+.+|+.+.|.|.+.+ .|.+.+.|++++..+..........|.|.++
T Consensus 8 p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~L~I~~v 59 (85)
T cd05754 8 PRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSRAMDFNGILTIRNV 59 (85)
T ss_pred CCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCcccccCCEEEECCC
Confidence 55677889999999999864 6888999999887654332222235555543
No 230
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=97.96 E-value=8.7e-05 Score=40.41 Aligned_cols=35 Identities=26% Similarity=0.656 Sum_probs=29.7
Q ss_pred EEEecCCcEEEEeeeecccCCeEEEEECCEEeecC
Q psy6361 99 VAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQ 133 (148)
Q Consensus 99 ~~~~~g~~~~l~C~~~g~p~~~~~W~~~g~~l~~~ 133 (148)
..+..|+.+.|.|.+.+.|.+.+.|++++..+..+
T Consensus 4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~ 38 (85)
T cd05729 4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKE 38 (85)
T ss_pred eEecCCCcEEEEEEcCCCCCCeEEEEECCEECccc
Confidence 34557899999999999999999999999887643
No 231
>PHA02982 hypothetical protein; Provisional
Probab=97.96 E-value=0.00025 Score=44.92 Aligned_cols=109 Identities=9% Similarity=0.093 Sum_probs=69.3
Q ss_pred eeeEeeeccceeeeeecccCCCCcCCCCccEEEEeeCC------------------------------EEecCCceEEEe
Q psy6361 7 VEQAMLLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDL------------------------------LYVTRNGSFVIN 56 (148)
Q Consensus 7 ~~~~~~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~------------------------------~~~~~~~~l~i~ 56 (148)
+..+..++.|.|.|.......-. +..|+++. ......++|+|.
T Consensus 33 dv~a~vd~~V~L~C~~~~~~~i~-------~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIk 105 (251)
T PHA02982 33 DVNATVDQEVKLQCLFKDADEIS-------RAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMK 105 (251)
T ss_pred hhhccCCCcEEEEecCCCcchhh-------hheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEec
Confidence 45567799999999976555443 57898863 222345789999
Q ss_pred cCCCCCCEEEEEEEEeCCCC-cEEEEEEEEecCCEEEeCCCceEEEecCCc-EEEEeeeecccCCeEEEEECCEE
Q psy6361 57 NIAEKDTNVYTCTVSNAAGS-TSKTIQMNVLVPPFFKDEQQESVAIVVNHP-MNISCSHYGVPTPDFSWYKDGSL 129 (148)
Q Consensus 57 ~~~~~d~g~y~C~~~~~~~~-~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~-~~l~C~~~g~p~~~~~W~~~g~~ 129 (148)
++..+..|.|+|.+....+. ......|.|+.. .+. ....++.. -.+.|-+.+...+...|..+|..
T Consensus 106 k~~i~N~GCYtc~~ks~~~k~E~c~kCl~V~~~-~V~------~~W~e~nNeT~V~CyVgS~~~dvp~W~V~GVv 173 (251)
T PHA02982 106 KPDPQNLGCFTCEAKDAEGKEETCEKCLEIQKE-DIL------YVVEEHNNETIITCFVGSKHGDVPRFIVAGIV 173 (251)
T ss_pred cCCcccCCceEEEEecCCCchheeheeeeEecc-eEE------EEEEecCCeEEEEEEEEeccCCCccEEEeeEE
Confidence 99999999999999876544 332444444211 111 11123333 56678875554443489887764
No 232
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=97.93 E-value=4.1e-05 Score=43.35 Aligned_cols=62 Identities=8% Similarity=0.037 Sum_probs=40.9
Q ss_pred eEeeeccceeeeeecccCCCCcCCCCccEEEEeeCCEEe-------------cCCceEEEecCCCCCCE-EEEEEEEeCC
Q psy6361 9 QAMLLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDLLYV-------------TRNGSFVINNIAEKDTN-VYTCTVSNAA 74 (148)
Q Consensus 9 ~~~~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~~~~-------------~~~~~l~i~~~~~~d~g-~y~C~~~~~~ 74 (148)
.+..|+.++|.|.+.+..++. .+++.||+++... ....++.+.. ..+|.| .|+|++.+..
T Consensus 12 ~~~eG~~~tL~C~v~g~~P~a-----~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~~-~r~D~g~~~sC~A~l~l 85 (100)
T cd05755 12 WQPVGKNYTLQCDVPGVAPRQ-----NLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITV-DREDHGANFSCETELDL 85 (100)
T ss_pred cccCCCcEEEEEEEcCcCCCC-----cEEEEEeeCCEEcccceeccccCCCceeEEEEEEec-chhhCCcEEEEEEEecc
Confidence 467899999999998876553 1247999997111 1123455543 455555 8999998765
Q ss_pred CC
Q psy6361 75 GS 76 (148)
Q Consensus 75 ~~ 76 (148)
..
T Consensus 86 ~~ 87 (100)
T cd05755 86 RP 87 (100)
T ss_pred Cc
Confidence 43
No 233
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=97.92 E-value=6.3e-05 Score=42.30 Aligned_cols=30 Identities=17% Similarity=0.409 Sum_probs=27.1
Q ss_pred CceEEEecCCcEEEEeeeecccCCeEEEEE
Q psy6361 96 QESVAIVVNHPMNISCSHYGVPTPDFSWYK 125 (148)
Q Consensus 96 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~ 125 (148)
++...+.+|+++.|.|.+.+.|.+.+.|++
T Consensus 4 ~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~ 33 (95)
T cd07701 4 TQNVTVVEGGTANLTCRVDQNDNTSLQWSN 33 (95)
T ss_pred cceEEEecCCcEEEEEEEecCCceEEEEeC
Confidence 456789999999999999999999999986
No 234
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=97.92 E-value=3.6e-05 Score=42.74 Aligned_cols=26 Identities=31% Similarity=0.724 Sum_probs=23.5
Q ss_pred CCcEEEEeeeecccCCeEEEEECCEE
Q psy6361 104 NHPMNISCSHYGVPTPDFSWYKDGSL 129 (148)
Q Consensus 104 g~~~~l~C~~~g~p~~~~~W~~~g~~ 129 (148)
|+.+.|.|.+.|.|.|.+.|+|+|..
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~ 26 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQ 26 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCc
Confidence 67899999999999999999998864
No 235
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=97.91 E-value=0.00015 Score=40.81 Aligned_cols=33 Identities=9% Similarity=0.322 Sum_probs=29.1
Q ss_pred ceEEEecCCcEEEEeeeecccCCeEEEEECCEE
Q psy6361 97 ESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSL 129 (148)
Q Consensus 97 ~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~g~~ 129 (148)
.+..+.+|+++.|.|.+.+.|.|.+.|++++..
T Consensus 5 ~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~ 37 (95)
T cd05882 5 QDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQ 37 (95)
T ss_pred ccEEEecCCcEEEEEEEeCCCCCeEEEeccCcc
Confidence 467888999999999999999999999987753
No 236
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=97.90 E-value=3.4e-05 Score=40.68 Aligned_cols=26 Identities=38% Similarity=0.774 Sum_probs=22.7
Q ss_pred EEEEeeeecccCCeEEEEECCEEeec
Q psy6361 107 MNISCSHYGVPTPDFSWYKDGSLLRI 132 (148)
Q Consensus 107 ~~l~C~~~g~p~~~~~W~~~g~~l~~ 132 (148)
+.|.|.+.|.|.|.+.|++++..+..
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~ 26 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGELPA 26 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeECCC
Confidence 46899999999999999999987754
No 237
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=97.89 E-value=2.4e-05 Score=43.89 Aligned_cols=34 Identities=21% Similarity=0.527 Sum_probs=28.9
Q ss_pred eEEEecCCcEEEEeeeec-----ccCCeEEEEECCEEee
Q psy6361 98 SVAIVVNHPMNISCSHYG-----VPTPDFSWYKDGSLLR 131 (148)
Q Consensus 98 ~~~~~~g~~~~l~C~~~g-----~p~~~~~W~~~g~~l~ 131 (148)
...+.+|+.+.|.|.+.+ .|.+.+.|||++..+.
T Consensus 8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~ 46 (94)
T cd05756 8 KSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTP 46 (94)
T ss_pred EEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCc
Confidence 456778999999999988 6888999999987643
No 238
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.86 E-value=0.0001 Score=37.92 Aligned_cols=51 Identities=24% Similarity=0.373 Sum_probs=37.8
Q ss_pred ceeeeeecccCCCCcCCCCccEEEEeeCCEE---------------ecCCceEEEecCCCCCCEEEEEEEEeCC
Q psy6361 16 IPMHSRYNYTNLPQSRNPGQVIKRYLKDLLY---------------VTRNGSFVINNIAEKDTNVYTCTVSNAA 74 (148)
Q Consensus 16 ~~l~C~~~~~~~p~~~~~~~~~v~W~~~~~~---------------~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 74 (148)
+.|.|.+.+.+.+ .+.|++.+.. ......+.+.++...|.|.|.|.+.+..
T Consensus 1 ~~l~C~~~~~~~~--------~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 1 VTLTCLASGPPPP--------TITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred CEEEEEecCCCCC--------cEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 4678999884343 6999998611 2223568888999999999999988755
No 239
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=97.86 E-value=4e-05 Score=40.29 Aligned_cols=26 Identities=27% Similarity=0.556 Sum_probs=22.4
Q ss_pred EEEEeeeecccCCeEEEEECCEEeec
Q psy6361 107 MNISCSHYGVPTPDFSWYKDGSLLRI 132 (148)
Q Consensus 107 ~~l~C~~~g~p~~~~~W~~~g~~l~~ 132 (148)
+.|.|.+.|.|.|.+.|+|++..+..
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~ 26 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGELPK 26 (69)
T ss_pred CEEEEECccCCCCEEEEEECCccCCC
Confidence 46899999999999999999877643
No 240
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=97.86 E-value=8.6e-05 Score=41.23 Aligned_cols=23 Identities=22% Similarity=0.652 Sum_probs=21.1
Q ss_pred CCcEEEEeeeecccCCeEEEEEC
Q psy6361 104 NHPMNISCSHYGVPTPDFSWYKD 126 (148)
Q Consensus 104 g~~~~l~C~~~g~p~~~~~W~~~ 126 (148)
|+.+.|.|.+.|.|.|.+.|+|+
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~ 23 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKH 23 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEe
Confidence 67899999999999999999984
No 241
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.83 E-value=1.8e-05 Score=42.32 Aligned_cols=23 Identities=39% Similarity=0.926 Sum_probs=20.4
Q ss_pred EEEEeeeecccCCeEEEEECCEE
Q psy6361 107 MNISCSHYGVPTPDFSWYKDGSL 129 (148)
Q Consensus 107 ~~l~C~~~g~p~~~~~W~~~g~~ 129 (148)
+.|.|.+.|.|.|.++|+|+|..
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~ 23 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGT 23 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCc
Confidence 46899999999999999999864
No 242
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=97.81 E-value=0.00013 Score=40.08 Aligned_cols=28 Identities=21% Similarity=0.495 Sum_probs=24.0
Q ss_pred CcEEEEeeeecccCC--eEEEEECCEEeec
Q psy6361 105 HPMNISCSHYGVPTP--DFSWYKDGSLLRI 132 (148)
Q Consensus 105 ~~~~l~C~~~g~p~~--~~~W~~~g~~l~~ 132 (148)
+++.|.|.+.|.|.| .+.|++||..+..
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~ 30 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDL 30 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccc
Confidence 468999999999987 5899999998864
No 243
>smart00406 IGv Immunoglobulin V-Type.
Probab=97.81 E-value=4e-05 Score=41.33 Aligned_cols=19 Identities=37% Similarity=0.644 Sum_probs=16.6
Q ss_pred ceEEEecCCCCCCEEEEEE
Q psy6361 51 GSFVINNIAEKDTNVYTCT 69 (148)
Q Consensus 51 ~~l~i~~~~~~d~g~y~C~ 69 (148)
..|.|.+++.+|+|.|.|.
T Consensus 62 ~~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 62 VSLTISNLRVEDTGTYYCA 80 (81)
T ss_pred EEEEEcCCCHHHCEEEEEc
Confidence 4688999999999999995
No 244
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=97.78 E-value=6.2e-05 Score=40.33 Aligned_cols=28 Identities=25% Similarity=0.686 Sum_probs=24.0
Q ss_pred EEEEeeeecccCCeEEEEECCEEeecCC
Q psy6361 107 MNISCSHYGVPTPDFSWYKDGSLLRIQS 134 (148)
Q Consensus 107 ~~l~C~~~g~p~~~~~W~~~g~~l~~~~ 134 (148)
+.|.|.+.|.|.|.+.|+|++..+....
T Consensus 1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~ 28 (76)
T cd05736 1 ASLRCHAEGIPLPRLTWLKNGMDITPKL 28 (76)
T ss_pred CEeEeEeeecCCCEEEEEECCEECCCCC
Confidence 3689999999999999999999886543
No 245
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=97.77 E-value=0.00014 Score=39.99 Aligned_cols=27 Identities=19% Similarity=0.427 Sum_probs=22.7
Q ss_pred CcEEEEeeeec--ccCCeEEEEECCEEee
Q psy6361 105 HPMNISCSHYG--VPTPDFSWYKDGSLLR 131 (148)
Q Consensus 105 ~~~~l~C~~~g--~p~~~~~W~~~g~~l~ 131 (148)
+++.|.|.+.+ .+.+.+.|++||+++.
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~ 29 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLID 29 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECc
Confidence 36889999866 5578999999999996
No 246
>KOG3515|consensus
Probab=97.76 E-value=7.8e-05 Score=55.72 Aligned_cols=117 Identities=18% Similarity=0.216 Sum_probs=75.2
Q ss_pred EeeeccceeeeeecccCCCCcCCCCccEEEEeeCC-------------------EEecCCceEEEecCCCCCCEEEEEEE
Q psy6361 10 AMLLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDL-------------------LYVTRNGSFVINNIAEKDTNVYTCTV 70 (148)
Q Consensus 10 ~~~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~-------------------~~~~~~~~l~i~~~~~~d~g~y~C~~ 70 (148)
...+..+.+.|.......|. ..++|..++ ........+.+...+..+.|.|+|.+
T Consensus 109 ~~~~~vvqi~c~~~~~~~P~------~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~v~Rka~~g~~tC~A 182 (741)
T KOG3515|consen 109 QVDKGVVQIICSAKVAGRPN------PNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLKQTVSRKADNGNYTCPA 182 (741)
T ss_pred hhcCCeEEEEEeecCCCCCC------cceeeeeccEEeecccCCcccccccccCceeccccceeeEEEEecCCceeEccc
Confidence 34556678888666555443 269998885 01122445777777889999999999
Q ss_pred EeCCC---CcEEEEEEEEe--cCCEEEeCCCceEEEecCCcEEEEeee-ecccCCeEEEEECCEEeec
Q psy6361 71 SNAAG---STSKTIQMNVL--VPPFFKDEQQESVAIVVNHPMNISCSH-YGVPTPDFSWYKDGSLLRI 132 (148)
Q Consensus 71 ~~~~~---~~~~~~~l~v~--~~p~~~~~~~~~~~~~~g~~~~l~C~~-~g~p~~~~~W~~~g~~l~~ 132 (148)
.+... .......+.+. .+..............+|..+.+.|.+ .|+|.+.++|+++......
T Consensus 183 ~nr~s~~l~~~~~~~i~v~~~~~~~~~~~~~~~qsF~~g~~inlvc~~~gg~P~~~~~w~~~s~~~~~ 250 (741)
T KOG3515|consen 183 NNRNSPGLSFAKQLTIIVEAPCKGIGITGAQEQQSFTEGQTINLVCNAQGGNPSQQQTWYKDSRPQSE 250 (741)
T ss_pred ccccCccccccceeEeecccccccceecchhhcCcccccceEEEEehhhcCCcchhhhhccccccchh
Confidence 88532 22223333333 222222221223667789999999975 5679999999998877654
No 247
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=97.75 E-value=4.6e-05 Score=42.37 Aligned_cols=24 Identities=21% Similarity=0.580 Sum_probs=21.7
Q ss_pred CCcEEEEeeeecccCCeEEEEECC
Q psy6361 104 NHPMNISCSHYGVPTPDFSWYKDG 127 (148)
Q Consensus 104 g~~~~l~C~~~g~p~~~~~W~~~g 127 (148)
|+.+.|.|.+.|.|.|.++|+|++
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~ 24 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHV 24 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEec
Confidence 578999999999999999999963
No 248
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=97.75 E-value=5.2e-05 Score=39.11 Aligned_cols=34 Identities=26% Similarity=0.491 Sum_probs=27.2
Q ss_pred CCcEEEEeee-ecccCCeEEEEECCEEeecCCceE
Q psy6361 104 NHPMNISCSH-YGVPTPDFSWYKDGSLLRIQSHYI 137 (148)
Q Consensus 104 g~~~~l~C~~-~g~p~~~~~W~~~g~~l~~~~~~~ 137 (148)
|+++.|.|.+ .+.+.+.+.|+++++.+.......
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~ 35 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTN 35 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCcceeE
Confidence 6789999999 777888999999988776544443
No 249
>PHA02633 hypothetical protein; Provisional
Probab=97.73 E-value=0.00018 Score=36.54 Aligned_cols=41 Identities=17% Similarity=0.314 Sum_probs=32.6
Q ss_pred CCceEEEecCCCCCCEEEEEEEEeCCCCcEEEEEEEEecCC
Q psy6361 49 RNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPP 89 (148)
Q Consensus 49 ~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~p 89 (148)
....|.|.++..+|+|.|.|...|..-.....+.++|...+
T Consensus 16 ~~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~~ 56 (63)
T PHA02633 16 NCNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLRI 56 (63)
T ss_pred ccccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeecc
Confidence 45678999999999999999999876666667777776443
No 250
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=97.73 E-value=0.00023 Score=39.94 Aligned_cols=51 Identities=12% Similarity=0.236 Sum_probs=36.5
Q ss_pred CceEEEecCCcEEEEee-eecccCCeEEEEECCEE-eecCCceEE---EEEEEEee
Q psy6361 96 QESVAIVVNHPMNISCS-HYGVPTPDFSWYKDGSL-LRIQSHYIT---FFLFFQRL 146 (148)
Q Consensus 96 ~~~~~~~~g~~~~l~C~-~~g~p~~~~~W~~~g~~-l~~~~~~~~---~~l~~~~~ 146 (148)
.....+.+|+.+.|.|. ..|.|.|.+.|++++.. +..+.++.. -.|.|..+
T Consensus 10 ~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~~~GnL~fs~v 65 (95)
T cd05845 10 IRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMGQNGNLYFANV 65 (95)
T ss_pred cceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEECCCceEEEEEE
Confidence 46678999999999997 69999999999987644 333344332 24555544
No 251
>PHA03273 envelope glycoprotein C; Provisional
Probab=97.73 E-value=0.00078 Score=47.59 Aligned_cols=79 Identities=14% Similarity=0.317 Sum_probs=58.3
Q ss_pred ceEEEecCCCCCCEEEEEEEEeCCCC--cEEEEEEEEecCCEEEeCCCceEEEecCCcEEEEeeeecc-c--CCeEEEEE
Q psy6361 51 GSFVINNIAEKDTNVYTCTVSNAAGS--TSKTIQMNVLVPPFFKDEQQESVAIVVNHPMNISCSHYGV-P--TPDFSWYK 125 (148)
Q Consensus 51 ~~l~i~~~~~~d~g~y~C~~~~~~~~--~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~-p--~~~~~W~~ 125 (148)
..|.|..++..++|.|+-...+..+. ....+.+....+|.+... ...+.+|+...-.|.+..+ | ...+.||+
T Consensus 198 ~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv~---~~PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~ 274 (486)
T PHA03273 198 FPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDLS---VHPSLKGENYRAVCVVASYFPHSSVKLRWYK 274 (486)
T ss_pred cceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCCccccc---CCccccCCCceEEEEeeeecCCCceEEEEEe
Confidence 44999999999999999776554333 233344444578887755 4578899999999998655 3 22799999
Q ss_pred CCEEeec
Q psy6361 126 DGSLLRI 132 (148)
Q Consensus 126 ~g~~l~~ 132 (148)
||.++..
T Consensus 275 dg~~V~~ 281 (486)
T PHA03273 275 NAKEVDF 281 (486)
T ss_pred CCeeccc
Confidence 9999983
No 252
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=97.72 E-value=9e-05 Score=41.03 Aligned_cols=37 Identities=19% Similarity=0.395 Sum_probs=30.5
Q ss_pred CceEEEecCCcEEEEeeeecccCCeEEEEECCEEeecC
Q psy6361 96 QESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQ 133 (148)
Q Consensus 96 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~g~~l~~~ 133 (148)
+....+.+|+.+.|.|.+.+ |.+.+.|++++..+...
T Consensus 3 ~~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~ 39 (89)
T cd04979 3 EKVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRK 39 (89)
T ss_pred ceEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccc
Confidence 34567788999999999877 78899999999877654
No 253
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=97.71 E-value=0.00018 Score=36.35 Aligned_cols=29 Identities=31% Similarity=0.783 Sum_probs=25.7
Q ss_pred cCCcEEEEeeeecccCCeEEEEECCEEee
Q psy6361 103 VNHPMNISCSHYGVPTPDFSWYKDGSLLR 131 (148)
Q Consensus 103 ~g~~~~l~C~~~g~p~~~~~W~~~g~~l~ 131 (148)
+|+.+.|.|.+.+.+.+.+.|++++..+.
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~ 29 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLKDGKPLP 29 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEECCEECC
Confidence 47889999998888889999999998876
No 254
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=97.67 E-value=0.0002 Score=39.25 Aligned_cols=28 Identities=21% Similarity=0.541 Sum_probs=23.8
Q ss_pred CcEEEEeeeecccCC--eEEEEECCEEeec
Q psy6361 105 HPMNISCSHYGVPTP--DFSWYKDGSLLRI 132 (148)
Q Consensus 105 ~~~~l~C~~~g~p~~--~~~W~~~g~~l~~ 132 (148)
+.+.|.|.+.|.|.| .+.|++||..+..
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~ 30 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDF 30 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeec
Confidence 368899999999987 6789999998864
No 255
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=97.66 E-value=0.00011 Score=41.05 Aligned_cols=49 Identities=22% Similarity=0.339 Sum_probs=35.2
Q ss_pred eEEEecCCcEEEEeeeec-----ccCCeEEEEECCEEeecCCce--EEEEEEEEee
Q psy6361 98 SVAIVVNHPMNISCSHYG-----VPTPDFSWYKDGSLLRIQSHY--ITFFLFFQRL 146 (148)
Q Consensus 98 ~~~~~~g~~~~l~C~~~g-----~p~~~~~W~~~g~~l~~~~~~--~~~~l~~~~~ 146 (148)
...+.+|....|.|...+ +|.|.+.|||||+++...... ....|.|..+
T Consensus 4 ~~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~~~~~~L~I~~v 59 (92)
T cd05757 4 KQILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRFVKGSKLLIQNV 59 (92)
T ss_pred eEEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEEecCCEEEEeeC
Confidence 456778999999998633 357899999999998765433 2235666654
No 256
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.63 E-value=7.3e-05 Score=40.46 Aligned_cols=24 Identities=25% Similarity=0.659 Sum_probs=21.9
Q ss_pred CCcEEEEeeeecccCCeEEEEECC
Q psy6361 104 NHPMNISCSHYGVPTPDFSWYKDG 127 (148)
Q Consensus 104 g~~~~l~C~~~g~p~~~~~W~~~g 127 (148)
|+.+.|.|.+.|.|.|.+.|+|++
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~ 24 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQV 24 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecC
Confidence 678999999999999999999973
No 257
>PHA03269 envelope glycoprotein C; Provisional
Probab=97.62 E-value=0.0009 Score=47.61 Aligned_cols=81 Identities=14% Similarity=0.174 Sum_probs=60.7
Q ss_pred CCceEEEecCCCCCCEEEEEEEEeCCC---CcEEEEEEEEecCCEEEeCCCceEEEecCCcEEEEeeeecc-c--CCeEE
Q psy6361 49 RNGSFVINNIAEKDTNVYTCTVSNAAG---STSKTIQMNVLVPPFFKDEQQESVAIVVNHPMNISCSHYGV-P--TPDFS 122 (148)
Q Consensus 49 ~~~~l~i~~~~~~d~g~y~C~~~~~~~---~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~-p--~~~~~ 122 (148)
....|.|.++...++|.|+-...+... .....+.+.+...|.+... ...+.+|+...-.|.+..+ | ...+.
T Consensus 287 ~~~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV~---p~PVL~Ge~YkAtC~vA~YYPp~Svrlr 363 (566)
T PHA03269 287 SDFSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITVI---GDPVLLGNPYAAYCKVNKYYPPHSVIVK 363 (566)
T ss_pred CccceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCcccc---CCccccCCCceEEEEeeeecCCCceEEE
Confidence 346799999999999999877654332 2445566666678876655 5578899999999998665 3 22799
Q ss_pred EEECCEEeec
Q psy6361 123 WYKDGSLLRI 132 (148)
Q Consensus 123 W~~~g~~l~~ 132 (148)
||+||.++..
T Consensus 364 Wf~ng~~V~~ 373 (566)
T PHA03269 364 WTSNFGNIGK 373 (566)
T ss_pred EEeCCcccCc
Confidence 9999988874
No 258
>PHA03270 envelope glycoprotein C; Provisional
Probab=97.60 E-value=0.0017 Score=45.54 Aligned_cols=79 Identities=14% Similarity=0.275 Sum_probs=60.0
Q ss_pred ceEEEecCCCCCCEEEEEEEEeCCCC--cEEEEEEEEecCCEEEeCCCceEEEecCCcEEEEeeeecccCC---eEEEEE
Q psy6361 51 GSFVINNIAEKDTNVYTCTVSNAAGS--TSKTIQMNVLVPPFFKDEQQESVAIVVNHPMNISCSHYGVPTP---DFSWYK 125 (148)
Q Consensus 51 ~~l~i~~~~~~d~g~y~C~~~~~~~~--~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~---~~~W~~ 125 (148)
..|.|..++...+|.|+-...+.... ....+.+.....|.+... ...+.+|+...-.|.+..+-++ .+.||+
T Consensus 182 ~~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~---~~PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ 258 (466)
T PHA03270 182 QRLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIR---PHAVLEGEPFGATCVAANYYPGDRAAFRWFE 258 (466)
T ss_pred ceEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCccccc---CCccccCCCceEEEEeeeecCCCceEEEEEe
Confidence 34999999999999999987665543 334455555678887755 4577899999999998655333 799999
Q ss_pred CCEEeec
Q psy6361 126 DGSLLRI 132 (148)
Q Consensus 126 ~g~~l~~ 132 (148)
||.++..
T Consensus 259 ng~~V~~ 265 (466)
T PHA03270 259 GGDEVFA 265 (466)
T ss_pred CCccccC
Confidence 9999864
No 259
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=97.60 E-value=0.00035 Score=38.20 Aligned_cols=37 Identities=19% Similarity=0.498 Sum_probs=29.5
Q ss_pred CceEEEecCCcEEEEeeee-cccCCeEEEEECCEEeec
Q psy6361 96 QESVAIVVNHPMNISCSHY-GVPTPDFSWYKDGSLLRI 132 (148)
Q Consensus 96 ~~~~~~~~g~~~~l~C~~~-g~p~~~~~W~~~g~~l~~ 132 (148)
++...+.+|+.+.|.|.+. +.+.+.+.|||+|..+..
T Consensus 6 ~p~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~ 43 (83)
T cd05753 6 VPSRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKY 43 (83)
T ss_pred CCcceecCCCCEEEEeeCCCCCcceEEEEEECCeEccc
Confidence 3455788999999999985 456678999999987753
No 260
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=97.58 E-value=0.00013 Score=39.58 Aligned_cols=26 Identities=23% Similarity=0.655 Sum_probs=22.6
Q ss_pred EEEEeee-ecccCCeEEEEECCEEeec
Q psy6361 107 MNISCSH-YGVPTPDFSWYKDGSLLRI 132 (148)
Q Consensus 107 ~~l~C~~-~g~p~~~~~W~~~g~~l~~ 132 (148)
+.|.|.. .|.|.+.+.||+|+++|..
T Consensus 2 ~~L~C~s~~skP~a~i~W~k~~~~l~~ 28 (80)
T cd05885 2 VELTCLSPRSKPAATLRWYRDRKELKG 28 (80)
T ss_pred EEEEEeCCCccCCCeEEEEECCEECCC
Confidence 6899996 5679999999999999964
No 261
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=97.56 E-value=0.0015 Score=37.06 Aligned_cols=41 Identities=24% Similarity=0.470 Sum_probs=30.4
Q ss_pred EEecCCceEEEecCCCCCCEEEEEEEEeCCCC-cEEEEEEEE
Q psy6361 45 LYVTRNGSFVINNIAEKDTNVYTCTVSNAAGS-TSKTIQMNV 85 (148)
Q Consensus 45 ~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~-~~~~~~l~v 85 (148)
.....+.+|.|..+++.|+|.|.-++.+..|. ....+++.|
T Consensus 65 ~F~~enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsV 106 (108)
T PF11465_consen 65 NFTSENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSV 106 (108)
T ss_dssp EEETTTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEE
T ss_pred eeeccCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEe
Confidence 45556789999999999999999999998887 444555544
No 262
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=97.50 E-value=0.0005 Score=36.78 Aligned_cols=23 Identities=9% Similarity=0.083 Sum_probs=17.9
Q ss_pred ceeeeeecccCCCCcCCCCccEEEEeeCC
Q psy6361 16 IPMHSRYNYTNLPQSRNPGQVIKRYLKDL 44 (148)
Q Consensus 16 ~~l~C~~~~~~~p~~~~~~~~~v~W~~~~ 44 (148)
++|.|.+.+..++. +.++|+|++
T Consensus 2 ~~L~C~a~gf~P~~------i~v~W~k~g 24 (75)
T smart00407 2 ATLVCLVSGFYPPD------ITVTWLRNG 24 (75)
T ss_pred eEEEEEEEeEeCCC------CEEEEEECC
Confidence 57899999985442 279999997
No 263
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=97.50 E-value=0.00022 Score=38.20 Aligned_cols=26 Identities=23% Similarity=0.703 Sum_probs=21.3
Q ss_pred EEEEeeee-cccCCeEEEEECCEEeec
Q psy6361 107 MNISCSHY-GVPTPDFSWYKDGSLLRI 132 (148)
Q Consensus 107 ~~l~C~~~-g~p~~~~~W~~~g~~l~~ 132 (148)
+.|.|.+. +.|.+.+.||++|+.+..
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~ 27 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGA 27 (76)
T ss_pred CEEEEecccCCCCCceEEEECCccccc
Confidence 36899976 468889999999998864
No 264
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=97.48 E-value=0.00073 Score=38.01 Aligned_cols=35 Identities=11% Similarity=0.246 Sum_probs=29.6
Q ss_pred CceEEEecCCcEEEEee-eecccCCeEEEEECCEEe
Q psy6361 96 QESVAIVVNHPMNISCS-HYGVPTPDFSWYKDGSLL 130 (148)
Q Consensus 96 ~~~~~~~~g~~~~l~C~-~~g~p~~~~~W~~~g~~l 130 (148)
.....+.+|..+.|.|. ..|.|.+.+.|++++.++
T Consensus 10 ~~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~ 45 (96)
T cd05727 10 RDEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPN 45 (96)
T ss_pred cCceeeeeCCcEEEeeCCCCCCCCCEEEEEECCccc
Confidence 34567889999999997 578899999999998764
No 265
>PHA03271 envelope glycoprotein C; Provisional
Probab=97.47 E-value=0.0039 Score=43.68 Aligned_cols=86 Identities=16% Similarity=0.222 Sum_probs=58.5
Q ss_pred ecCCceEEEecCCCCCCEEEEEEEEeCCCC--cEEEEEEEEe-cCCEEEeCCCceEEEecCCcEEEEeeeecccCC---e
Q psy6361 47 VTRNGSFVINNIAEKDTNVYTCTVSNAAGS--TSKTIQMNVL-VPPFFKDEQQESVAIVVNHPMNISCSHYGVPTP---D 120 (148)
Q Consensus 47 ~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~--~~~~~~l~v~-~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~---~ 120 (148)
......+.|.++...++|.|.-...+..-. ......+.+. .+|.+... ...+.+|+.-.-.|.+..+-+| .
T Consensus 203 tt~~m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsVsV~---a~PVL~Ge~YkAtC~vAnYYPP~Svr 279 (490)
T PHA03271 203 TTNTMGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASVDVL---APPVLSGENYKASCIVRHFYPPGSVY 279 (490)
T ss_pred ccceeeEEEEEeecccceEEEEEecCCCCCccccceEEEEEEecCCCcccc---CCccccCCCceEEEEeeeecCCCceE
Confidence 445668999999999999664444432222 2333444444 66767655 4577899999999998665333 7
Q ss_pred EEEEECCEEeecCCc
Q psy6361 121 FSWYKDGSLLRIQSH 135 (148)
Q Consensus 121 ~~W~~~g~~l~~~~~ 135 (148)
+.||+||.+......
T Consensus 280 lrWf~nG~~V~~~~~ 294 (490)
T PHA03271 280 VSWRQNGNIATPRKD 294 (490)
T ss_pred EEEEeCCccccCccc
Confidence 999999999876543
No 266
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=97.42 E-value=0.00038 Score=37.87 Aligned_cols=26 Identities=31% Similarity=0.851 Sum_probs=22.2
Q ss_pred EEEEeeeec-ccCCeEEEEECCEEeec
Q psy6361 107 MNISCSHYG-VPTPDFSWYKDGSLLRI 132 (148)
Q Consensus 107 ~~l~C~~~g-~p~~~~~W~~~g~~l~~ 132 (148)
+.|.|.+.| .|.+.++|+++|+.+..
T Consensus 2 ~~L~C~v~g~~P~~~v~W~~~g~~l~~ 28 (82)
T cd05759 2 YNLTCRARGAKPAAEIIWFRDGEVLDG 28 (82)
T ss_pred EEEEEEEeCccCCCEEEEEECCEEccC
Confidence 679999977 68889999999998754
No 267
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=97.39 E-value=0.0013 Score=36.01 Aligned_cols=25 Identities=28% Similarity=0.615 Sum_probs=22.4
Q ss_pred CCcEEEEeeeecccCCeEEEEECCE
Q psy6361 104 NHPMNISCSHYGVPTPDFSWYKDGS 128 (148)
Q Consensus 104 g~~~~l~C~~~g~p~~~~~W~~~g~ 128 (148)
|+++.|.|.+.+.|.+.+.|++.++
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~ 25 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGK 25 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCc
Confidence 6889999999999999999998765
No 268
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=97.39 E-value=0.0007 Score=37.85 Aligned_cols=57 Identities=12% Similarity=0.181 Sum_probs=36.1
Q ss_pred eccceeeeeecccCCCCcCCCCccEEEEeeCCEE-----------ecCCceEE---EecCCCCCCEEEEEEEEeCCC
Q psy6361 13 LDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDLLY-----------VTRNGSFV---INNIAEKDTNVYTCTVSNAAG 75 (148)
Q Consensus 13 g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~~~-----------~~~~~~l~---i~~~~~~d~g~y~C~~~~~~~ 75 (148)
++.+.|.|.+.+..++. +.++|++++.. ...+..+. ...+...+.+.|+|.+.+...
T Consensus 14 ~~~~~L~C~a~gF~P~~------i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H~~~ 84 (93)
T cd07698 14 DGSLTLSCHATGFYPRD------IEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCRVEHSGL 84 (93)
T ss_pred CCcEEEEEEEEEEeCCC------cEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEEEEeCCC
Confidence 67899999999974442 27999998721 11122221 233445567789998877553
No 269
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=97.39 E-value=0.0015 Score=36.91 Aligned_cols=44 Identities=18% Similarity=0.381 Sum_probs=33.4
Q ss_pred CCEEEeCCCceEEEecCCcEEEEeeeecccCC-eEEEEECCEEeecC
Q psy6361 88 PPFFKDEQQESVAIVVNHPMNISCSHYGVPTP-DFSWYKDGSLLRIQ 133 (148)
Q Consensus 88 ~p~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~-~~~W~~~g~~l~~~ 133 (148)
+|.+ .. .....+.+|+.+.|.|.+.+.|.| .+.|..++..+...
T Consensus 2 pP~i-~~-~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~ 46 (98)
T cd05898 2 PPII-SS-EQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESG 46 (98)
T ss_pred CCEE-ec-CceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCC
Confidence 4555 34 567788899999999999888876 56888887776543
No 270
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=97.39 E-value=0.00076 Score=37.05 Aligned_cols=40 Identities=15% Similarity=0.268 Sum_probs=32.3
Q ss_pred ceEEEecCCcEEEEeeeecccCCeEEEEECCEEeecCCceE
Q psy6361 97 ESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHYI 137 (148)
Q Consensus 97 ~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~g~~l~~~~~~~ 137 (148)
....+.+|+.+.|.|...+. .+.+.|++||..+..+.++.
T Consensus 4 ~~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~~r~~ 43 (85)
T cd05872 4 KNRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNAQFSYR 43 (85)
T ss_pred eEEEEecCCCEEEECCCCCC-CccEEEEECCcccCCCcceE
Confidence 35678899999999998776 56999999999987655443
No 271
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=97.38 E-value=0.00055 Score=38.43 Aligned_cols=49 Identities=16% Similarity=0.433 Sum_probs=33.4
Q ss_pred eEEEecCCcEEEEeee-e----cccCCeEEEEECCEEeecCCc-eEE----EEEEEEee
Q psy6361 98 SVAIVVNHPMNISCSH-Y----GVPTPDFSWYKDGSLLRIQSH-YIT----FFLFFQRL 146 (148)
Q Consensus 98 ~~~~~~g~~~~l~C~~-~----g~p~~~~~W~~~g~~l~~~~~-~~~----~~l~~~~~ 146 (148)
...+.+|.+..|.|.- . ..+.+.++||||+.++..+.. +.. ..|.|..+
T Consensus 4 ~~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~~~~~L~I~~v 62 (95)
T cd05897 4 PQILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLKGSTYLHIIDV 62 (95)
T ss_pred eeEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecCCCCEEEEEEc
Confidence 3456778899999983 3 336679999999999875432 111 25666655
No 272
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=97.38 E-value=0.0035 Score=35.14 Aligned_cols=29 Identities=10% Similarity=0.019 Sum_probs=23.0
Q ss_pred EeeeccceeeeeecccCCCCcCCCCccEEEEeeCC
Q psy6361 10 AMLLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDL 44 (148)
Q Consensus 10 ~~~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~ 44 (148)
+..++...|.|.+.+..++. +.++|++++
T Consensus 11 ~~~~~~~~L~C~~~gFyP~~------i~v~W~~~g 39 (94)
T cd05766 11 GSLSHPHLLVCHVWGFYPPE------ITVKWFKNG 39 (94)
T ss_pred ccCCCCeEEEEEEeeecCCC------CEEEEEECC
Confidence 34678899999999975553 379999998
No 273
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=97.34 E-value=0.00061 Score=37.21 Aligned_cols=27 Identities=19% Similarity=0.416 Sum_probs=23.2
Q ss_pred CCcEEEEeeeecc--cCCeEEEEECCEEe
Q psy6361 104 NHPMNISCSHYGV--PTPDFSWYKDGSLL 130 (148)
Q Consensus 104 g~~~~l~C~~~g~--p~~~~~W~~~g~~l 130 (148)
|+.+.|.|.+.+. |.|.+.|+++++.+
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~ 29 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKR 29 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCccc
Confidence 6789999999998 88899999877654
No 274
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=97.34 E-value=0.00053 Score=37.38 Aligned_cols=27 Identities=19% Similarity=0.597 Sum_probs=22.5
Q ss_pred EEEEeeeec-ccCCeEEEEECCEEeecC
Q psy6361 107 MNISCSHYG-VPTPDFSWYKDGSLLRIQ 133 (148)
Q Consensus 107 ~~l~C~~~g-~p~~~~~W~~~g~~l~~~ 133 (148)
+.|.|.+.| .|.+.+.||++++++...
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~ 29 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNKELTGK 29 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCEECcCc
Confidence 678999765 588899999999998753
No 275
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.31 E-value=0.0011 Score=34.56 Aligned_cols=49 Identities=10% Similarity=0.082 Sum_probs=35.4
Q ss_pred eeccceeeeeecccCCCCcCCCCccEEEEeeCCEEe-cCCceEEEecCCCCCCEEEEEEEEe
Q psy6361 12 LLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDLLYV-TRNGSFVINNIAEKDTNVYTCTVSN 72 (148)
Q Consensus 12 ~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~~ 72 (148)
..+.|.|.|.. . . +|.|+++.... ..+..+.+.+......|.|.|.+.+
T Consensus 5 ~~~~V~L~C~~---~--t-------si~W~kG~~~~~~~~~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 5 SEGKVFLKCNG---A--T-------NITWKKGKEILEVSNTLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred cCceEEEEecC---C--C-------cEEEecCcccccccccEEeccCcccCCCcceEecCcc
Confidence 44568899965 1 2 59999953222 2267888888888889999998766
No 276
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=97.31 E-value=0.0024 Score=36.99 Aligned_cols=30 Identities=10% Similarity=0.016 Sum_probs=23.3
Q ss_pred eEeeeccceeeeeecccCCCCcCCCCccEEEEeeCC
Q psy6361 9 QAMLLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDL 44 (148)
Q Consensus 9 ~~~~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~ 44 (148)
....|+.++|.|.+.+..++. ..++|+|+|
T Consensus 17 ~~~~g~~~tL~C~a~gF~P~~------i~v~W~kng 46 (111)
T cd05772 17 RANPGQSVNFTCSAHGFSPRD------ITVKWLKNG 46 (111)
T ss_pred ccCCCCCEEEEEEEeeEeCCC------CEEEEEECC
Confidence 345677889999999986542 289999998
No 277
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=97.30 E-value=0.0012 Score=38.27 Aligned_cols=59 Identities=17% Similarity=0.324 Sum_probs=41.2
Q ss_pred eeeEeeeccceeeeeecccCCCCcCCCCccEEEEeeCC----------------------------EEecCCceEEEecC
Q psy6361 7 VEQAMLLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDL----------------------------LYVTRNGSFVINNI 58 (148)
Q Consensus 7 ~~~~~~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~----------------------------~~~~~~~~l~i~~~ 58 (148)
...+..|..++|.|.+.+..... +..+.|+|.. ........|.|.++
T Consensus 7 ~~lv~p~~sv~LsC~~sg~~~s~-----e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L 81 (115)
T cd05721 7 PVLASSNGAASLVCEYTYNGFSK-----EFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNL 81 (115)
T ss_pred CeEEcCCCCEEEEEEecCCcccc-----EEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCC
Confidence 45677788899999997766542 1357888863 01112246888899
Q ss_pred CCCCCEEEEEEE
Q psy6361 59 AEKDTNVYTCTV 70 (148)
Q Consensus 59 ~~~d~g~y~C~~ 70 (148)
+.+|.+.|.|..
T Consensus 82 ~a~DTa~Y~Ca~ 93 (115)
T cd05721 82 RANQTDIYFCKI 93 (115)
T ss_pred CHHHCeEEEEEe
Confidence 999999999953
No 278
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=97.28 E-value=0.003 Score=35.83 Aligned_cols=37 Identities=14% Similarity=0.189 Sum_probs=29.9
Q ss_pred CceEEEecCCcEEEEeeeec-ccCCe--EEEEECCEEeec
Q psy6361 96 QESVAIVVNHPMNISCSHYG-VPTPD--FSWYKDGSLLRI 132 (148)
Q Consensus 96 ~~~~~~~~g~~~~l~C~~~g-~p~~~--~~W~~~g~~l~~ 132 (148)
+....+.+|+.+.|.|.+.| .|.+. +.||+++..+..
T Consensus 8 ~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~ 47 (100)
T cd05755 8 PLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSR 47 (100)
T ss_pred cCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEccc
Confidence 45556789999999999866 57665 799999999865
No 279
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=97.26 E-value=0.00039 Score=38.39 Aligned_cols=57 Identities=18% Similarity=0.139 Sum_probs=35.5
Q ss_pred eccceeeeeecccCCCCcCCCCccEEEEeeCCEEe----------cCC------ceEEEecCCCCCCEEEEEEEEeCCCC
Q psy6361 13 LDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDLLYV----------TRN------GSFVINNIAEKDTNVYTCTVSNAAGS 76 (148)
Q Consensus 13 g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~~~~----------~~~------~~l~i~~~~~~d~g~y~C~~~~~~~~ 76 (148)
|+.+.+.|...+..++. .++|+.++... ... ..|.+..-...+...++|.+.+....
T Consensus 14 ~~~~~~~C~s~~~~P~~-------~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~ 86 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPP-------QITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALS 86 (89)
T ss_dssp TEEEEEEEEEEEEBS-E-------EEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCC
T ss_pred ceEEEEEEEeCCeECCe-------EEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccC
Confidence 56899999877765543 79999987111 111 23444333333556799999886643
No 280
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.23 E-value=0.0014 Score=33.82 Aligned_cols=52 Identities=12% Similarity=0.135 Sum_probs=35.3
Q ss_pred eEeeeccceeeeeecccCCCCcCCCCccEEEEeeCCEEec-CCceEEEecCCCCCCEEEEEEEEe
Q psy6361 9 QAMLLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDLLYVT-RNGSFVINNIAEKDTNVYTCTVSN 72 (148)
Q Consensus 9 ~~~~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~~ 72 (148)
.-+.|..|+|+|.... . .+.|++++.... ....+.+.+-. +++|.|.|.+.+
T Consensus 3 VsisGTtVtlTCP~~~---~--------~i~W~~n~~~~~g~~~~~~~~~~~-e~~G~Y~C~~~~ 55 (65)
T cd07692 3 VSISGTTVTVTCPLSG---D--------DIKWKKNDQVSQGSDEKYLSLNHF-SSSGYYHCTADN 55 (65)
T ss_pred EEEeccEEEEECCCCC---C--------CceEEeCCccCCCCCceEEeeccC-CCCceEEEEeCC
Confidence 3467889999998542 1 377999973333 22345555666 889999998753
No 281
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=97.22 E-value=0.00034 Score=37.75 Aligned_cols=21 Identities=29% Similarity=0.776 Sum_probs=18.8
Q ss_pred EEEEeeeecccCCeEEEEECC
Q psy6361 107 MNISCSHYGVPTPDFSWYKDG 127 (148)
Q Consensus 107 ~~l~C~~~g~p~~~~~W~~~g 127 (148)
+.|.|.+.|.|.|.+.|++++
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~ 21 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSK 21 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECC
Confidence 468999999999999999964
No 282
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=97.21 E-value=0.0013 Score=36.90 Aligned_cols=27 Identities=11% Similarity=-0.031 Sum_probs=20.7
Q ss_pred eeccceeeeeecccCCCCcCCCCccEEEEeeCC
Q psy6361 12 LLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDL 44 (148)
Q Consensus 12 ~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~ 44 (148)
..+.+.|.|.+.+..++. +.++|++++
T Consensus 13 ~~~~~~L~C~a~gFyP~~------I~vtW~~dg 39 (94)
T cd05847 13 TSETIQLLCLISGYTPGT------IEVEWLVDG 39 (94)
T ss_pred CCCCEEEEEEEEeEECCC------CEEEEEECC
Confidence 345688999999975442 389999997
No 283
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=97.21 E-value=0.0071 Score=33.84 Aligned_cols=58 Identities=14% Similarity=0.218 Sum_probs=35.2
Q ss_pred eeeccceeeeeecccCCCCcCCCCccEEEEeeCCEEe----------cCCceEEE---ecCCCCCCEEEEEEEEeCC
Q psy6361 11 MLLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDLLYV----------TRNGSFVI---NNIAEKDTNVYTCTVSNAA 74 (148)
Q Consensus 11 ~~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~~~~----------~~~~~l~i---~~~~~~d~g~y~C~~~~~~ 74 (148)
..|....|.|.+.+-.++. ..++|+|+|... ..+.++.+ ..+...+...|+|.+.+..
T Consensus 13 ~~g~~~~L~C~a~gFyP~~------i~v~W~~dg~~~~~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~~ 83 (93)
T cd05770 13 ENGKPNVLNCYVTGFHPPD------IEIRLLKNGVKIPKVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHNS 83 (93)
T ss_pred cCCCceEEEEEEEEEeCCC------CEEEEEECCEECCCcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEECC
Confidence 3445568999999975542 389999998321 22222222 2234555667888877643
No 284
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=97.21 E-value=0.00078 Score=39.01 Aligned_cols=46 Identities=24% Similarity=0.369 Sum_probs=30.7
Q ss_pred cCCEEEeCCCceEEEecCCcEEEEeeeecc-cC-CeEEEEECCEEeec
Q psy6361 87 VPPFFKDEQQESVAIVVNHPMNISCSHYGV-PT-PDFSWYKDGSLLRI 132 (148)
Q Consensus 87 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~-p~-~~~~W~~~g~~l~~ 132 (148)
.+|..............|+.+.|.|.+.|. |. ..++|+|||+.+..
T Consensus 4 ~~P~~p~i~~~~~~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~ 51 (111)
T cd05772 4 AKPSVPVVSGPSGRANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSA 51 (111)
T ss_pred cCCCCcEeCCchhccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcc
Confidence 344433331233445567889999999875 53 58999999999753
No 285
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.21 E-value=0.00092 Score=37.64 Aligned_cols=31 Identities=10% Similarity=0.061 Sum_probs=23.9
Q ss_pred eeEeeeccceeeeeeccc-CCCCcCCCCccEEEEeeCC
Q psy6361 8 EQAMLLDLIPMHSRYNYT-NLPQSRNPGQVIKRYLKDL 44 (148)
Q Consensus 8 ~~~~~g~~~~l~C~~~~~-~~p~~~~~~~~~v~W~~~~ 44 (148)
+....++...|.|.+.+. .++. ..++|.|++
T Consensus 9 ~~l~~~~~~tLtC~v~gf~yP~~------i~v~W~r~~ 40 (96)
T cd07696 9 KQLLLTKSVKLTCLVTNLTSPEG------VNVTWTRGS 40 (96)
T ss_pred HHhccCCCeEEEEEEeCCCCCCC------cEEEEEECC
Confidence 445568889999999999 4432 389999985
No 286
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=97.20 E-value=0.0015 Score=36.69 Aligned_cols=31 Identities=13% Similarity=0.313 Sum_probs=26.1
Q ss_pred EEEecCCcEEEEeeeecccCCeEEEEECCEE
Q psy6361 99 VAIVVNHPMNISCSHYGVPTPDFSWYKDGSL 129 (148)
Q Consensus 99 ~~~~~g~~~~l~C~~~g~p~~~~~W~~~g~~ 129 (148)
..+.+|++|.|.|...+.+.+.+.|+++++.
T Consensus 2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k 32 (94)
T cd07690 2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQI 32 (94)
T ss_pred eEeeCCCCEEEEEEeCCCCCcEEEEEECCcE
Confidence 3567899999999998889999999977633
No 287
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=97.18 E-value=0.0029 Score=35.33 Aligned_cols=30 Identities=13% Similarity=0.379 Sum_probs=25.8
Q ss_pred CceEEEecCCcEEEEeeeecccCCeEEEEE
Q psy6361 96 QESVAIVVNHPMNISCSHYGVPTPDFSWYK 125 (148)
Q Consensus 96 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~ 125 (148)
.....+.+|+++.|.|.+.+.+.+.+.|++
T Consensus 4 ~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~ 33 (95)
T cd05717 4 TQDVTVVEGGTATLKCRVKNNDNSSLQWSN 33 (95)
T ss_pred CCcEEEcCCCCEEEEEEECCCCCceEEEeC
Confidence 345678899999999999888888999985
No 288
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=97.13 E-value=0.002 Score=38.77 Aligned_cols=26 Identities=0% Similarity=-0.148 Sum_probs=20.8
Q ss_pred eeccceeeeeecccCCC-CcCCCCccEEEEeeCC
Q psy6361 12 LLDLIPMHSRYNYTNLP-QSRNPGQVIKRYLKDL 44 (148)
Q Consensus 12 ~g~~~~l~C~~~~~~~p-~~~~~~~~~v~W~~~~ 44 (148)
.|+.+.|.|.+.+..++ . .+.|++++
T Consensus 52 ~~~~~~L~C~a~g~~P~~~-------~i~W~~~g 78 (139)
T cd05771 52 IEEPQTLICHIAGYYPLDV-------QVEWTREP 78 (139)
T ss_pred cCCcEEEEEEECCCCCCCe-------EEEEEECC
Confidence 57788999999987443 3 79999986
No 289
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.12 E-value=0.001 Score=37.72 Aligned_cols=27 Identities=7% Similarity=-0.220 Sum_probs=21.0
Q ss_pred eeccceeeeeecccCCCCcCCCCccEEEEeeCC
Q psy6361 12 LLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDL 44 (148)
Q Consensus 12 ~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~ 44 (148)
.++.+.|.|.+.+..++. +.+.|+++|
T Consensus 16 ~~~~~~L~C~~~gfyP~~------i~v~W~~~g 42 (100)
T cd07699 16 KSGKATLVCLINDFYPGF------ATVQWKVDG 42 (100)
T ss_pred cCCCcEEEEEEEeEECCC------CEEEEEECC
Confidence 356689999999975432 389999998
No 290
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=97.11 E-value=0.0011 Score=36.06 Aligned_cols=26 Identities=23% Similarity=0.694 Sum_probs=21.8
Q ss_pred EEEEeeeec-ccCCeEEEEECCEEeec
Q psy6361 107 MNISCSHYG-VPTPDFSWYKDGSLLRI 132 (148)
Q Consensus 107 ~~l~C~~~g-~p~~~~~W~~~g~~l~~ 132 (148)
+.|.|.+.+ .|.+.+.|+++|+.+..
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~ 28 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKELKG 28 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEEccC
Confidence 679999865 58889999999998753
No 291
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=97.04 E-value=0.0045 Score=34.76 Aligned_cols=57 Identities=11% Similarity=0.089 Sum_probs=34.3
Q ss_pred cceeeeeecccCCCCcCCCCccEEEEeeCC-------EEecCC------ceEEEecCCCCCCEEEEEEEEeCCCCcE
Q psy6361 15 LIPMHSRYNYTNLPQSRNPGQVIKRYLKDL-------LYVTRN------GSFVINNIAEKDTNVYTCTVSNAAGSTS 78 (148)
Q Consensus 15 ~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~-------~~~~~~------~~l~i~~~~~~d~g~y~C~~~~~~~~~~ 78 (148)
.+.+.|...+..++. .++|+++. .....+ ..|.+......|...|+|.+.+......
T Consensus 17 ~~va~C~s~~gkPaa-------~IsW~~~~~g~~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~ 86 (95)
T cd07703 17 VPVAKCVSANGRPPA-------RISWSSTLGGNANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEP 86 (95)
T ss_pred cEEEEEEcCCCCCCc-------EEEEEcCCCCCeeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCC
Confidence 346899888776654 89999973 111111 2344433333444579999998765433
No 292
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=97.03 E-value=0.0021 Score=35.14 Aligned_cols=26 Identities=27% Similarity=0.787 Sum_probs=21.7
Q ss_pred EEEEeeeec-ccCCeEEEEECCEEeec
Q psy6361 107 MNISCSHYG-VPTPDFSWYKDGSLLRI 132 (148)
Q Consensus 107 ~~l~C~~~g-~p~~~~~W~~~g~~l~~ 132 (148)
+.|.|.+.| +|...++|+|||..+..
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~ 28 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKD 28 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcC
Confidence 578999866 67789999999998754
No 293
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=97.01 E-value=0.0017 Score=35.54 Aligned_cols=26 Identities=23% Similarity=0.566 Sum_probs=21.8
Q ss_pred EEEEeeeecc-cCCeEEEEECCEEeec
Q psy6361 107 MNISCSHYGV-PTPDFSWYKDGSLLRI 132 (148)
Q Consensus 107 ~~l~C~~~g~-p~~~~~W~~~g~~l~~ 132 (148)
+.|.|.+.|. |.+.++|++||+.+..
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~ 28 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEG 28 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCC
Confidence 6789998764 8889999999988764
No 294
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=96.97 E-value=0.002 Score=35.88 Aligned_cols=33 Identities=21% Similarity=0.535 Sum_probs=26.6
Q ss_pred ecCCcEEEEeeeecc-c-CCeEEEEECCEEeecCC
Q psy6361 102 VVNHPMNISCSHYGV-P-TPDFSWYKDGSLLRIQS 134 (148)
Q Consensus 102 ~~g~~~~l~C~~~g~-p-~~~~~W~~~g~~l~~~~ 134 (148)
..|..+.|.|.+.|. | .+.++|++||..+....
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~ 45 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGV 45 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCce
Confidence 357899999999987 5 35899999999886543
No 295
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=96.97 E-value=0.0059 Score=33.98 Aligned_cols=27 Identities=22% Similarity=0.342 Sum_probs=23.0
Q ss_pred eEEEecCCcEEEEeeeecccCCeEEEEE
Q psy6361 98 SVAIVVNHPMNISCSHYGVPTPDFSWYK 125 (148)
Q Consensus 98 ~~~~~~g~~~~l~C~~~g~p~~~~~W~~ 125 (148)
.....+|+.+.|.|.. +.|.|.+.||+
T Consensus 5 ~~~~~eG~~v~L~C~~-~~p~p~v~Wyk 31 (91)
T cd05871 5 VVYGVENNSTFLECLP-KSPQASVKWLF 31 (91)
T ss_pred EEEEecCCcEEEEEEC-CCCCceEEEEE
Confidence 3467789999999996 57889999998
No 296
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=96.96 E-value=0.02 Score=40.13 Aligned_cols=114 Identities=7% Similarity=0.021 Sum_probs=70.4
Q ss_pred eeeeEeeeccceeeeeecccCCCCcCCCCccEEEEeeCC------------------------------E----EecCCc
Q psy6361 6 NVEQAMLLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDL------------------------------L----YVTRNG 51 (148)
Q Consensus 6 ~~~~~~~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~------------------------------~----~~~~~~ 51 (148)
+..++..|..+.+.|....-. |.......|+..+ + .....+
T Consensus 272 ~~~~~~~g~~v~~~c~~s~~~-----~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~S 346 (500)
T PHA02914 272 DEVMLEVGKRVDIECFFSMCG-----NENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNS 346 (500)
T ss_pred ceeEeccCcEEEEEEEEeecC-----CcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhc
Confidence 345677799999999976522 1112257888764 0 112346
Q ss_pred eEEEecCCCCCCEEEEEEEEeCCCCcEEEEEEEEecCCEEEeCCCceEEEecCCc-EEEEeeeecc--cCCeEEEEECCE
Q psy6361 52 SFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKDEQQESVAIVVNHP-MNISCSHYGV--PTPDFSWYKDGS 128 (148)
Q Consensus 52 ~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~-~~l~C~~~g~--p~~~~~W~~~g~ 128 (148)
+|+|.++..+..|-|+|.+............|.|... +. -.-..+++. -...|-+-.. -++.+.|..+|.
T Consensus 347 TLTIkka~I~N~GCY~~~a~~g~~~~ec~~Cl~V~d~--V~-----f~W~~e~~n~T~V~Cyv~sy~~kp~si~wkvnGV 419 (500)
T PHA02914 347 TLTIKKAHINNAGCYEAQAFMGKFKEECRHCFKVADH--VF-----FKWNTEGDNETKVACYAAQYDMQPFSILWKSNGV 419 (500)
T ss_pred eEEeeeEEEEcCCceEEEEecCcchhhhhhheEeccE--EE-----EEEEeccCceEEEEEEEEecccCCceeEEEEccE
Confidence 8999999999999999999876443333334433321 11 112334444 4567886444 344689998887
Q ss_pred Eee
Q psy6361 129 LLR 131 (148)
Q Consensus 129 ~l~ 131 (148)
...
T Consensus 420 ~~~ 422 (500)
T PHA02914 420 SFG 422 (500)
T ss_pred Eec
Confidence 764
No 297
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=96.93 E-value=0.0088 Score=31.82 Aligned_cols=34 Identities=38% Similarity=0.855 Sum_probs=28.7
Q ss_pred eEEEecCCcEEEEeeeecccCCeEEEEEC-CEEee
Q psy6361 98 SVAIVVNHPMNISCSHYGVPTPDFSWYKD-GSLLR 131 (148)
Q Consensus 98 ~~~~~~g~~~~l~C~~~g~p~~~~~W~~~-g~~l~ 131 (148)
...+..|+.+.|.|.+.+.+.+.+.|+++ +..+.
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~ 37 (86)
T smart00410 3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLA 37 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcC
Confidence 45677899999999998878889999998 77665
No 298
>smart00409 IG Immunoglobulin.
Probab=96.93 E-value=0.0088 Score=31.82 Aligned_cols=34 Identities=38% Similarity=0.855 Sum_probs=28.7
Q ss_pred eEEEecCCcEEEEeeeecccCCeEEEEEC-CEEee
Q psy6361 98 SVAIVVNHPMNISCSHYGVPTPDFSWYKD-GSLLR 131 (148)
Q Consensus 98 ~~~~~~g~~~~l~C~~~g~p~~~~~W~~~-g~~l~ 131 (148)
...+..|+.+.|.|.+.+.+.+.+.|+++ +..+.
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~ 37 (86)
T smart00409 3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLA 37 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcC
Confidence 45677899999999998878889999998 77665
No 299
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=96.89 E-value=0.0039 Score=34.95 Aligned_cols=28 Identities=14% Similarity=-0.031 Sum_probs=20.9
Q ss_pred eeeccceeeeeecccCCCCcCCCCccEEEEeeCC
Q psy6361 11 MLLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDL 44 (148)
Q Consensus 11 ~~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~ 44 (148)
..++..+|.|.+.+-.++. +.++|.++|
T Consensus 13 ~~~~~~tL~C~a~gFyP~~------I~v~W~~~g 40 (94)
T cd05767 13 ELGEPNTLICFVDNFFPPV------LNVTWLKNG 40 (94)
T ss_pred cCCCCeEEEEEEEEEECCc------CEEEEEECC
Confidence 3455579999999975432 289999998
No 300
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=96.88 E-value=0.0053 Score=33.44 Aligned_cols=27 Identities=11% Similarity=0.016 Sum_probs=21.5
Q ss_pred eeccceeeeeecccCCCCcCCCCccEEEEeeCC
Q psy6361 12 LLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDL 44 (148)
Q Consensus 12 ~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~ 44 (148)
.++.+.|.|.+.+..+.. +.+.|++++
T Consensus 7 ~~~~~~L~C~v~~f~P~~------i~v~W~~~~ 33 (83)
T PF07654_consen 7 LGGSVTLTCLVSGFYPKD------ITVTWLKNG 33 (83)
T ss_dssp STSEEEEEEEEEEEBSST------EEEEEEETT
T ss_pred CCCCEEEEEEEEEEECCC------cEEEEEecc
Confidence 377889999999875542 379999997
No 301
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=96.85 E-value=0.0042 Score=35.21 Aligned_cols=38 Identities=13% Similarity=0.264 Sum_probs=32.2
Q ss_pred ceEEEecCCcEEEEeeeecccCCe-EEEEECCEEeecCC
Q psy6361 97 ESVAIVVNHPMNISCSHYGVPTPD-FSWYKDGSLLRIQS 134 (148)
Q Consensus 97 ~~~~~~~g~~~~l~C~~~g~p~~~-~~W~~~g~~l~~~~ 134 (148)
....+.+|+++.|.|.+.++|+|. +.|.+++..+....
T Consensus 11 ~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~ 49 (101)
T cd05860 11 TTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTS 49 (101)
T ss_pred ceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccc
Confidence 456788999999999999999997 99999988765433
No 302
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=96.79 E-value=0.01 Score=33.33 Aligned_cols=55 Identities=13% Similarity=0.068 Sum_probs=33.0
Q ss_pred cceeeeeecccCCCCcCCCCccEEEEeeC--C-----EEecCC------ceEEEecCCCCCCEEEEEEEEeCCCC
Q psy6361 15 LIPMHSRYNYTNLPQSRNPGQVIKRYLKD--L-----LYVTRN------GSFVINNIAEKDTNVYTCTVSNAAGS 76 (148)
Q Consensus 15 ~~~l~C~~~~~~~p~~~~~~~~~v~W~~~--~-----~~~~~~------~~l~i~~~~~~d~g~y~C~~~~~~~~ 76 (148)
...+.|...+..++. .|+|+++ + .....+ ..|.+......|...|+|.+.+....
T Consensus 17 ~~va~C~s~~gkP~a-------~ItW~~~~~~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~ 84 (95)
T cd05719 17 VTVATCVSANGKPPA-------TISWETTLGGEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQ 84 (95)
T ss_pred cEEEEEECCCCcCCC-------EEEEEeCCCCcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccC
Confidence 346799997665554 7999997 2 111112 23444333334445799999987654
No 303
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=96.72 E-value=0.003 Score=34.81 Aligned_cols=27 Identities=33% Similarity=0.882 Sum_probs=22.4
Q ss_pred CCcEEEEeee-ecccCCeEEEEECCEEe
Q psy6361 104 NHPMNISCSH-YGVPTPDFSWYKDGSLL 130 (148)
Q Consensus 104 g~~~~l~C~~-~g~p~~~~~W~~~g~~l 130 (148)
|+.+.+.|.+ .++|.|.+.|+.++..+
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~ 41 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPV 41 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEE
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCce
Confidence 5689999975 67899999999999887
No 304
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=96.69 E-value=0.0051 Score=35.37 Aligned_cols=30 Identities=13% Similarity=0.411 Sum_probs=25.9
Q ss_pred CceEEEecCCcEEEEeeeecccCCeEEEEEC
Q psy6361 96 QESVAIVVNHPMNISCSHYGVPTPDFSWYKD 126 (148)
Q Consensus 96 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~ 126 (148)
|....+.+|+++.|.|...+ +.+.+.|||.
T Consensus 5 p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq 34 (110)
T cd05899 5 PRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQ 34 (110)
T ss_pred CCceEEcCCCcEEEEEEECC-CCCEEEEEEE
Confidence 56778899999999999877 6778999984
No 305
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.63 E-value=0.0044 Score=35.30 Aligned_cols=28 Identities=7% Similarity=0.097 Sum_probs=22.1
Q ss_pred eeeccceeeeeecccCCCCcCCCCccEEEEeeCC
Q psy6361 11 MLLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDL 44 (148)
Q Consensus 11 ~~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~ 44 (148)
..++.++|.|.+.+..++. +.++|++++
T Consensus 14 ~~~~~~tL~C~a~gFyP~~------i~v~W~k~g 41 (102)
T cd05768 14 SLQETATLTCLVKGFSPSD------IFVKWLQNG 41 (102)
T ss_pred CcCCceEEEEEEeeEeCCC------CEEEEEECC
Confidence 3467899999999975542 378999997
No 306
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=96.60 E-value=0.02 Score=32.18 Aligned_cols=33 Identities=18% Similarity=0.162 Sum_probs=25.8
Q ss_pred ceEEEecCCcEEEEeeeecccCCeEEEEECCEE
Q psy6361 97 ESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSL 129 (148)
Q Consensus 97 ~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~g~~ 129 (148)
+...+.+|+++.|.|.+.+.....+.|++-+..
T Consensus 5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~ 37 (95)
T cd05881 5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQ 37 (95)
T ss_pred CceEEcCCCcEEEEEEEccCCccEEEEEecCCc
Confidence 457788999999999998876666778765533
No 307
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=96.57 E-value=0.013 Score=32.58 Aligned_cols=40 Identities=20% Similarity=0.471 Sum_probs=29.2
Q ss_pred CEEEeCCCceEEEecCCcEEEEeeeecccCCeEEEEECCEEee
Q psy6361 89 PFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLR 131 (148)
Q Consensus 89 p~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~g~~l~ 131 (148)
|.+... + ...+.+|++|.|.|... .+...+.|+|+|....
T Consensus 3 P~L~a~-p-~~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~ 42 (91)
T cd05751 3 PSLWAE-P-SSVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFA 42 (91)
T ss_pred CEEEec-C-CCccCCCCcEEEEEecC-CCCCEEEEEECCCCcc
Confidence 444444 3 34677999999999875 5567899999987643
No 308
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=96.56 E-value=0.0099 Score=33.16 Aligned_cols=26 Identities=27% Similarity=0.772 Sum_probs=21.4
Q ss_pred CCcEEEEeeeecc-cCC-eEEEEECCEE
Q psy6361 104 NHPMNISCSHYGV-PTP-DFSWYKDGSL 129 (148)
Q Consensus 104 g~~~~l~C~~~g~-p~~-~~~W~~~g~~ 129 (148)
++.+.|.|.+.|. |.. .+.|+++|..
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~ 41 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGED 41 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEE
Confidence 6789999999995 543 8999999964
No 309
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=96.54 E-value=0.0044 Score=35.13 Aligned_cols=31 Identities=16% Similarity=0.375 Sum_probs=24.6
Q ss_pred EecCCcEEEEeeeecc-c-CCeEEEEECCEEee
Q psy6361 101 IVVNHPMNISCSHYGV-P-TPDFSWYKDGSLLR 131 (148)
Q Consensus 101 ~~~g~~~~l~C~~~g~-p-~~~~~W~~~g~~l~ 131 (148)
...+..+.|.|.+.|. | ...+.|++||..+.
T Consensus 14 ~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~ 46 (100)
T cd07699 14 LEKSGKATLVCLINDFYPGFATVQWKVDGATVS 46 (100)
T ss_pred HccCCCcEEEEEEEeEECCCCEEEEEECCEECc
Confidence 4456779999999874 4 45889999999974
No 310
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=96.52 E-value=0.0074 Score=34.52 Aligned_cols=31 Identities=13% Similarity=0.378 Sum_probs=26.7
Q ss_pred CceEEEecCCcEEEEeeeecccCCeEEEEEC
Q psy6361 96 QESVAIVVNHPMNISCSHYGVPTPDFSWYKD 126 (148)
Q Consensus 96 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~ 126 (148)
+....+.+|+++.|.|...+.+...+.||+.
T Consensus 5 ~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~ 35 (109)
T cd04983 5 PQSLSVQEGENVTLNCNYSTSTFYYLFWYRQ 35 (109)
T ss_pred CCceEEcCCCCEEEEEEECCCCccEEEEEEE
Confidence 5567888999999999988777789999984
No 311
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=96.48 E-value=0.0081 Score=32.04 Aligned_cols=24 Identities=21% Similarity=0.631 Sum_probs=19.6
Q ss_pred EEEEeeeecc-cC-CeEEEEECCEEe
Q psy6361 107 MNISCSHYGV-PT-PDFSWYKDGSLL 130 (148)
Q Consensus 107 ~~l~C~~~g~-p~-~~~~W~~~g~~l 130 (148)
+.|.|.+.|. |. ..+.|+|||+++
T Consensus 2 ~~L~C~a~gf~P~~i~v~W~k~g~~~ 27 (75)
T smart00407 2 ATLVCLVSGFYPPDITVTWLRNGQEV 27 (75)
T ss_pred eEEEEEEEeEeCCCCEEEEEECCEEC
Confidence 6799999886 44 589999999874
No 312
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=96.42 E-value=0.012 Score=33.60 Aligned_cols=31 Identities=16% Similarity=0.454 Sum_probs=25.4
Q ss_pred CceEEEecCCcEEEEeeeeccc-CCeEEEEEC
Q psy6361 96 QESVAIVVNHPMNISCSHYGVP-TPDFSWYKD 126 (148)
Q Consensus 96 ~~~~~~~~g~~~~l~C~~~g~p-~~~~~W~~~ 126 (148)
|....+.+|+++.|.|...+.. ...+.|||.
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq 38 (106)
T cd04980 7 PATLSVSPGESATISCKASQSVSSNYLAWYQQ 38 (106)
T ss_pred CCcEEECCCCCEEEEEEECCCCCCCcEEEEEE
Confidence 6667888999999999987654 567999974
No 313
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=96.39 E-value=0.016 Score=33.82 Aligned_cols=26 Identities=4% Similarity=-0.256 Sum_probs=20.6
Q ss_pred eccceeeeeecccCCCCcCCCCccEEEEeeCC
Q psy6361 13 LDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDL 44 (148)
Q Consensus 13 g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~ 44 (148)
++.+.|.|.+.+..++. +.++|++++
T Consensus 18 ~~~~tL~Cla~gFyP~~------I~V~W~kng 43 (115)
T cd05769 18 KRKATLVCLATGFYPDH------VSLSWKVNG 43 (115)
T ss_pred CCCcEEEEEEEeEeCCC------cEEEEEECC
Confidence 45689999999975552 379999997
No 314
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=96.38 E-value=0.0067 Score=35.34 Aligned_cols=32 Identities=22% Similarity=0.422 Sum_probs=24.6
Q ss_pred EecCCcEEEEeeeecc-cC-CeEEEEECCEEeec
Q psy6361 101 IVVNHPMNISCSHYGV-PT-PDFSWYKDGSLLRI 132 (148)
Q Consensus 101 ~~~g~~~~l~C~~~g~-p~-~~~~W~~~g~~l~~ 132 (148)
+.++..+.|.|.+.|. |. ..+.|++||..+..
T Consensus 15 ~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~ 48 (115)
T cd05769 15 IRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTD 48 (115)
T ss_pred hccCCCcEEEEEEEeEeCCCcEEEEEECCEECCC
Confidence 3356779999999885 54 38899999988754
No 315
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.37 E-value=0.0055 Score=34.90 Aligned_cols=31 Identities=19% Similarity=0.551 Sum_probs=23.9
Q ss_pred EecCCcEEEEeeeecc-cCC-eEEEEECCEEee
Q psy6361 101 IVVNHPMNISCSHYGV-PTP-DFSWYKDGSLLR 131 (148)
Q Consensus 101 ~~~g~~~~l~C~~~g~-p~~-~~~W~~~g~~l~ 131 (148)
+..+..+.|.|.+.|. |.. .+.|++||+.+.
T Consensus 13 ~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~ 45 (102)
T cd05768 13 LSLQETATLTCLVKGFSPSDIFVKWLQNGQPLS 45 (102)
T ss_pred hCcCCceEEEEEEeeEeCCCCEEEEEECCEECC
Confidence 3346789999999885 433 679999998865
No 316
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=96.30 E-value=0.012 Score=33.08 Aligned_cols=27 Identities=0% Similarity=-0.323 Sum_probs=20.8
Q ss_pred eeccceeeeeecccCCCCcCCCCccEEEEeeCC
Q psy6361 12 LLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDL 44 (148)
Q Consensus 12 ~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~ 44 (148)
.++...|.|.+.+-.++. ..++|.++|
T Consensus 15 ~~~~~tL~C~a~gFyP~~------I~v~W~kng 41 (96)
T cd07697 15 KQGQGIYLCLLENFFPDV------IQVHWREGN 41 (96)
T ss_pred cCCCEEEEEEEEEEeCCC------eEEEEEECC
Confidence 356689999999975442 379999998
No 317
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.22 E-value=0.016 Score=32.59 Aligned_cols=28 Identities=7% Similarity=-0.205 Sum_probs=21.5
Q ss_pred eeccceeeeeecccCCCCcCCCCccEEEEeeCCE
Q psy6361 12 LLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDLL 45 (148)
Q Consensus 12 ~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~~ 45 (148)
.++.+.|.|.+.+-.++. +.++|+|++.
T Consensus 15 ~~~~~~L~C~a~gFyP~~------i~vtW~k~g~ 42 (95)
T cd04985 15 SSDSVTLGCLATGFLPEP------VTFTWNSGSN 42 (95)
T ss_pred CCCcEEEEEEEeeEECCC------cEEEEeECCE
Confidence 456789999999974432 3899999984
No 318
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=96.18 E-value=0.021 Score=33.92 Aligned_cols=76 Identities=17% Similarity=0.184 Sum_probs=41.3
Q ss_pred eeeeEeeeccceeeeeecccCCCCcCCCCccEEEEeeCCEE----e--------------------cCCceEEEecCCCC
Q psy6361 6 NVEQAMLLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDLLY----V--------------------TRNGSFVINNIAEK 61 (148)
Q Consensus 6 ~~~~~~~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~~~----~--------------------~~~~~l~i~~~~~~ 61 (148)
.++...-.+.|.+.|.+.....- +-..+.+.|..++.. . .++.+|.+.....-
T Consensus 20 ~V~~t~CN~tV~IPC~v~n~~~~---ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~ 96 (130)
T PF08204_consen 20 SVEYTVCNDTVVIPCFVNNLEAN---NISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV 96 (130)
T ss_dssp EEEE-TT-SEEEE--BBSS---S---SGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH
T ss_pred EEEEEecCCCEEEEeEecccccc---ccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc
Confidence 45566667889999999753211 222347999998710 0 11233666664333
Q ss_pred CCEEEEEEEEeCCCCcEEEEEEEE
Q psy6361 62 DTNVYTCTVSNAAGSTSKTIQMNV 85 (148)
Q Consensus 62 d~g~y~C~~~~~~~~~~~~~~l~v 85 (148)
.|+|+|.+.......+..+.|..
T Consensus 97 -~GnYTCeVt~~~~ege~~i~Lk~ 119 (130)
T PF08204_consen 97 -EGNYTCEVTELSREGETTIELKY 119 (130)
T ss_dssp --EEEEEEEEETTEEEEEEEEEEE
T ss_pred -ccceEEEEEecCCCceEEEEEEE
Confidence 79999999876655555555554
No 319
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=96.08 E-value=0.019 Score=32.17 Aligned_cols=31 Identities=26% Similarity=0.681 Sum_probs=24.7
Q ss_pred ecCCcEEEEeeeecc-cCC-eEEEEECCEEeec
Q psy6361 102 VVNHPMNISCSHYGV-PTP-DFSWYKDGSLLRI 132 (148)
Q Consensus 102 ~~g~~~~l~C~~~g~-p~~-~~~W~~~g~~l~~ 132 (148)
..+..+.|.|.+.|. |.. .+.|++||+.+..
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~ 44 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETE 44 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEECCeecCC
Confidence 357889999999885 443 7899999998765
No 320
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=96.07 E-value=0.018 Score=33.33 Aligned_cols=31 Identities=29% Similarity=0.547 Sum_probs=25.7
Q ss_pred CceEEEecCCcEEEEeeeec--ccCCeEEEEEC
Q psy6361 96 QESVAIVVNHPMNISCSHYG--VPTPDFSWYKD 126 (148)
Q Consensus 96 ~~~~~~~~g~~~~l~C~~~g--~p~~~~~W~~~ 126 (148)
+....+.+|+++.|.|...+ .+.+.+.|||.
T Consensus 5 p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq 37 (116)
T cd04982 5 QLSITREESKSVTISCKVSGIDFSTTYIHWYRQ 37 (116)
T ss_pred CCeEEeCCCCCEEEEEEEeCCCccccEEEEEEE
Confidence 55667788999999999877 56778999984
No 321
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=96.03 E-value=0.01 Score=33.41 Aligned_cols=29 Identities=14% Similarity=0.104 Sum_probs=22.7
Q ss_pred cCCcEEEEeeeecc-c-CCeEEEEECCEEee
Q psy6361 103 VNHPMNISCSHYGV-P-TPDFSWYKDGSLLR 131 (148)
Q Consensus 103 ~g~~~~l~C~~~g~-p-~~~~~W~~~g~~l~ 131 (148)
.+..+.|.|.+.|. | ...+.|.+||..+.
T Consensus 15 ~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~ 45 (96)
T cd07697 15 KQGQGIYLCLLENFFPDVIQVHWREGNSPSI 45 (96)
T ss_pred cCCCEEEEEEEEEEeCCCeEEEEEECCEECc
Confidence 35678999999884 4 33789999999864
No 322
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=96.01 E-value=0.041 Score=30.83 Aligned_cols=29 Identities=21% Similarity=0.483 Sum_probs=22.7
Q ss_pred CCcEEEEeeeecc-c-CCeEEEEECCEEeec
Q psy6361 104 NHPMNISCSHYGV-P-TPDFSWYKDGSLLRI 132 (148)
Q Consensus 104 g~~~~l~C~~~g~-p-~~~~~W~~~g~~l~~ 132 (148)
+....|.|.+.|. | ...++|.+||..+..
T Consensus 15 ~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~ 45 (94)
T cd05767 15 GEPNTLICFVDNFFPPVLNVTWLKNGVPVTD 45 (94)
T ss_pred CCCeEEEEEEEEEECCcCEEEEEECCeEccC
Confidence 4557999999885 4 347899999998754
No 323
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=95.95 E-value=0.017 Score=30.09 Aligned_cols=34 Identities=29% Similarity=0.609 Sum_probs=23.1
Q ss_pred CEEEeCCCceEEEecCCcEEEEeeeeccc-CCeEEEE
Q psy6361 89 PFFKDEQQESVAIVVNHPMNISCSHYGVP-TPDFSWY 124 (148)
Q Consensus 89 p~~~~~~~~~~~~~~g~~~~l~C~~~g~p-~~~~~W~ 124 (148)
|.+... +.......+. +.|.|.+.+.+ .+.++|+
T Consensus 2 P~I~~~-~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~ 36 (75)
T PF13927_consen 2 PQISVP-PPPVVTSGGS-VTLTCSAEGGPPPPSISWY 36 (75)
T ss_dssp SEEEEE-STSEEETTEE-EEEEEEESSEESSEEEEEE
T ss_pred CEEEEc-CCCcEeecee-EEEEEEEccccCCeEEEEE
Confidence 455544 3333333333 99999998887 7899999
No 324
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=95.77 E-value=0.044 Score=30.77 Aligned_cols=27 Identities=19% Similarity=0.569 Sum_probs=21.6
Q ss_pred cCCcEEEEeeeecc-c-CCeEEEEECCEE
Q psy6361 103 VNHPMNISCSHYGV-P-TPDFSWYKDGSL 129 (148)
Q Consensus 103 ~g~~~~l~C~~~g~-p-~~~~~W~~~g~~ 129 (148)
.++.+.|.|.+.|. | ...+.|++||+.
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~ 43 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS 43 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE
Confidence 45679999999885 4 347899999997
No 325
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=95.73 E-value=0.037 Score=31.59 Aligned_cols=35 Identities=20% Similarity=0.458 Sum_probs=24.8
Q ss_pred eEEEecCCcEEEEeee-e----------cccCCeEEEEECCEEeec
Q psy6361 98 SVAIVVNHPMNISCSH-Y----------GVPTPDFSWYKDGSLLRI 132 (148)
Q Consensus 98 ~~~~~~g~~~~l~C~~-~----------g~p~~~~~W~~~g~~l~~ 132 (148)
...+.+|+.+.|.|.. . ......+.|||++..+..
T Consensus 9 ~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~ 54 (104)
T cd05896 9 KYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEE 54 (104)
T ss_pred eEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCC
Confidence 3567799999999995 1 122347999999755544
No 326
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=95.70 E-value=0.032 Score=31.19 Aligned_cols=32 Identities=19% Similarity=0.271 Sum_probs=24.9
Q ss_pred eEEEecCCcEEEEeeeecccCCeEEEEECCEEe
Q psy6361 98 SVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLL 130 (148)
Q Consensus 98 ~~~~~~g~~~~l~C~~~g~p~~~~~W~~~g~~l 130 (148)
...+.+|++|+|.|.... +...+.|||+|...
T Consensus 9 ~~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~ 40 (94)
T cd05711 9 SPVVPSGENVTLQCHSDI-RFDRFILYKEGRSK 40 (94)
T ss_pred CCccCCCCeEEEEEecCC-CCCEEEEEECCCCC
Confidence 456778999999998654 44579999988653
No 327
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=95.68 E-value=0.041 Score=30.79 Aligned_cols=29 Identities=21% Similarity=0.423 Sum_probs=22.3
Q ss_pred cCCcEEEEeeeecc-c-CCeEEEEECCEEee
Q psy6361 103 VNHPMNISCSHYGV-P-TPDFSWYKDGSLLR 131 (148)
Q Consensus 103 ~g~~~~l~C~~~g~-p-~~~~~W~~~g~~l~ 131 (148)
.|....|.|.+.|. | ...+.|+|||..+.
T Consensus 14 ~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~ 44 (93)
T cd05770 14 NGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP 44 (93)
T ss_pred CCCceEEEEEEEEEeCCCCEEEEEECCEECC
Confidence 35557899999885 4 33789999999865
No 328
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=95.61 E-value=0.03 Score=31.69 Aligned_cols=28 Identities=7% Similarity=-0.019 Sum_probs=21.1
Q ss_pred eeccceeeeeecccCCCCcCCCCccEEEEeeCC
Q psy6361 12 LLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDL 44 (148)
Q Consensus 12 ~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~ 44 (148)
.++.++|.|.+.+...|. .+.|+|.+++
T Consensus 18 ~~~~atLtClV~~f~~P~-----~i~V~W~~~g 45 (99)
T cd04986 18 LGSSASLTCTLSGLRDPE-----GAVFTWTPSG 45 (99)
T ss_pred cCCccEEEEEEeccCCCC-----CeEEEEEECC
Confidence 567789999999865221 1389999986
No 329
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=95.56 E-value=0.085 Score=29.76 Aligned_cols=61 Identities=10% Similarity=-0.049 Sum_probs=36.3
Q ss_pred eeEeeecccee-eeeecccCCCCcCCCCccEEEEeeCC--E-----EecCC------ceEEEecCCCCCCEEEEEEEEeC
Q psy6361 8 EQAMLLDLIPM-HSRYNYTNLPQSRNPGQVIKRYLKDL--L-----YVTRN------GSFVINNIAEKDTNVYTCTVSNA 73 (148)
Q Consensus 8 ~~~~~g~~~~l-~C~~~~~~~p~~~~~~~~~v~W~~~~--~-----~~~~~------~~l~i~~~~~~d~g~y~C~~~~~ 73 (148)
.....|+.+.+ .|...+..++. .++|+.+. . ....+ ..+.+...+..|.-.++|.+.+.
T Consensus 11 ~~~~~g~~~~vA~C~sa~gkPaa-------~IsW~~~~~G~~~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~ 83 (97)
T cd07704 11 LLIDGGNGTTLAACCAAEGRPAA-------DVTWETNVYGTSESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHP 83 (97)
T ss_pred eEeecCcceeEEEEEccCCccCC-------EeEEeCCCCCccceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCc
Confidence 44455667777 89888776665 89999873 0 11111 12333333334445799998876
Q ss_pred CC
Q psy6361 74 AG 75 (148)
Q Consensus 74 ~~ 75 (148)
.-
T Consensus 84 al 85 (97)
T cd07704 84 AL 85 (97)
T ss_pred cc
Confidence 54
No 330
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=95.55 E-value=0.032 Score=31.27 Aligned_cols=28 Identities=21% Similarity=0.567 Sum_probs=22.5
Q ss_pred cCCcEEEEeeeecc-cC-CeEEEEECCEEe
Q psy6361 103 VNHPMNISCSHYGV-PT-PDFSWYKDGSLL 130 (148)
Q Consensus 103 ~g~~~~l~C~~~g~-p~-~~~~W~~~g~~l 130 (148)
..+.+.|.|.+.|. |. ..++|++||..+
T Consensus 13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~ 42 (94)
T cd05847 13 TSETIQLLCLISGYTPGTIEVEWLVDGQVA 42 (94)
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEEC
Confidence 44668999999884 53 488999999986
No 331
>KOG1480|consensus
Probab=95.54 E-value=0.0081 Score=45.36 Aligned_cols=62 Identities=15% Similarity=0.227 Sum_probs=45.7
Q ss_pred eeEeeeccceeeeeecccCCCCcCCCCccEEEEeeCC--------EEecCCceEEEecCCCCCCEEEEEEEEeCCCC
Q psy6361 8 EQAMLLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDL--------LYVTRNGSFVINNIAEKDTNVYTCTVSNAAGS 76 (148)
Q Consensus 8 ~~~~~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~--------~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 76 (148)
..+..+..+.+.|..-...+.. .+.|+|++ ......+.+.+..+...|+|+|+|++.|-...
T Consensus 139 q~V~~~s~~~l~cr~pe~~paa-------e~~w~k~e~~~~pd~n~~~~~d~~li~~~arlsd~~nytc~a~ni~~~ 208 (909)
T KOG1480|consen 139 QEVQEETTLQLPCRPPEGDPKA-------EVEWLKNEVVIDPDANVIRASDHNLIISQARLSDSGNYTCEATNIVAK 208 (909)
T ss_pred heecccccccccccCcccchhh-------hhhccccCCCCCccccchhhhcCCccccchhhhhcccceeeeehhhcc
Confidence 4455666677777765444332 58899997 33344578899999999999999999987765
No 332
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=95.50 E-value=0.063 Score=29.13 Aligned_cols=29 Identities=21% Similarity=0.564 Sum_probs=23.5
Q ss_pred CCcEEEEeeeecc-cCC-eEEEEECCEEeec
Q psy6361 104 NHPMNISCSHYGV-PTP-DFSWYKDGSLLRI 132 (148)
Q Consensus 104 g~~~~l~C~~~g~-p~~-~~~W~~~g~~l~~ 132 (148)
+..+.|.|.+.+. |.. .+.|++||..+..
T Consensus 8 ~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~ 38 (83)
T PF07654_consen 8 GGSVTLTCLVSGFYPKDITVTWLKNGKEVTE 38 (83)
T ss_dssp TSEEEEEEEEEEEBSSTEEEEEEETTEEETT
T ss_pred CCCEEEEEEEEEEECCCcEEEEEeccceeee
Confidence 6789999999885 533 7999999998754
No 333
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=95.46 E-value=0.079 Score=29.81 Aligned_cols=31 Identities=10% Similarity=0.453 Sum_probs=23.0
Q ss_pred EEEecCCcEEEEeeeecc--c-CCeEEEEECCEE
Q psy6361 99 VAIVVNHPMNISCSHYGV--P-TPDFSWYKDGSL 129 (148)
Q Consensus 99 ~~~~~g~~~~l~C~~~g~--p-~~~~~W~~~g~~ 129 (148)
..+..++.+.|.|.+.|. | ...++|.|||..
T Consensus 9 ~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~ 42 (96)
T cd07696 9 KQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGE 42 (96)
T ss_pred HHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeE
Confidence 344557889999999887 3 337899998743
No 334
>PHA03042 CD47-like protein; Provisional
Probab=95.42 E-value=0.2 Score=33.54 Aligned_cols=72 Identities=17% Similarity=0.137 Sum_probs=41.0
Q ss_pred eeEeeeccceeeeeecccCCCCcCCCCccEEEEeeCCEEe-----cCCceEEEecCCCCCCEEEEEEEEeCCCCcEEEEE
Q psy6361 8 EQAMLLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDLLYV-----TRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQ 82 (148)
Q Consensus 8 ~~~~~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~~~~-----~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~ 82 (148)
+.-.=.+.+.+.|.+... ...|-....+.|..+++.. ....+|.+.. ...-.|+|+|++.+........+.
T Consensus 26 eyT~CN~TV~IpC~v~n~---~~~ni~~~~V~Wkf~~~~If~~n~tn~aSL~~~f-~~~l~GNYTCEv~~l~n~gk~~Ie 101 (286)
T PHA03042 26 IYTTCNKTIVIVCNLNLL---IYYNISNIHINWKFNNKVIFKKNNTNTSSLKFNF-SKNLSGNYTCEAINKFNKIKNTIE 101 (286)
T ss_pred EEEecCceEEEEeecCCh---hhcCccceEEEEEeCCeeEEEecCCcceEEEEec-cccCCCceeEEEeecccCccEEEE
Confidence 334445778889998653 2223334479999987211 1223455433 344579999998865443333333
Q ss_pred E
Q psy6361 83 M 83 (148)
Q Consensus 83 l 83 (148)
|
T Consensus 102 L 102 (286)
T PHA03042 102 L 102 (286)
T ss_pred E
Confidence 3
No 335
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=95.40 E-value=0.091 Score=29.68 Aligned_cols=58 Identities=10% Similarity=0.012 Sum_probs=37.1
Q ss_pred eEeeeccceeeeeecccCCCCcCCCCccEEEEeeCCEE-----e----------cCCceEEEecCCCCCCE-EEEEEEEe
Q psy6361 9 QAMLLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDLLY-----V----------TRNGSFVINNIAEKDTN-VYTCTVSN 72 (148)
Q Consensus 9 ~~~~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~~~-----~----------~~~~~l~i~~~~~~d~g-~y~C~~~~ 72 (148)
....|..+++.|.+.+..+. ..+.+.|+++... . .....+.+.. .++|.| +|.|.|.-
T Consensus 11 ~l~~G~~vtv~C~v~~v~P~-----~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftp-treD~g~~fsC~A~L 84 (99)
T cd07689 11 PLEEGKPVTVKCEVPDVYPF-----DRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTP-TIEDIGKVLVCRAKL 84 (99)
T ss_pred cccCCceEEEEEEecCcccC-----CceEEEEecCcceecccccccccccCCCCCcceeEEEec-chhhCCcEEEEEEEE
Confidence 34789999999999766433 2347899987511 0 0123444444 466766 79999763
No 336
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=95.19 E-value=0.069 Score=35.48 Aligned_cols=38 Identities=24% Similarity=0.397 Sum_probs=31.2
Q ss_pred EEEEeeCC---------EEecCCceEEEecCCCCCCEEEEEEEEeCC
Q psy6361 37 IKRYLKDL---------LYVTRNGSFVINNIAEKDTNVYTCTVSNAA 74 (148)
Q Consensus 37 ~v~W~~~~---------~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 74 (148)
.+.|..++ ......+.|.+.+...+++|.|+|..+...
T Consensus 14 ~y~W~GP~g~~l~gn~~~nIT~TG~L~~~~F~esmSG~YTCtLsYk~ 60 (271)
T PF07354_consen 14 TYLWTGPNGKPLSGNSYVNITETGKLMFKNFQESMSGSYTCTLSYKP 60 (271)
T ss_pred ceEEECCCCcccCCCCeEEEccCceEEeeccccccCCceEEEEEEEe
Confidence 58998874 355667789999999999999999988654
No 337
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=95.05 E-value=0.076 Score=30.77 Aligned_cols=30 Identities=23% Similarity=0.453 Sum_probs=24.2
Q ss_pred CceEEEecCCcEEEEeeeecc-cCCeEEEEE
Q psy6361 96 QESVAIVVNHPMNISCSHYGV-PTPDFSWYK 125 (148)
Q Consensus 96 ~~~~~~~~g~~~~l~C~~~g~-p~~~~~W~~ 125 (148)
+....+.+|+++.|.|..... ....+.|||
T Consensus 6 ~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyr 36 (116)
T cd07706 6 QPDVSVQVGEEVTLNCRYETSWTNYYIFWYK 36 (116)
T ss_pred CCceEEcCCCCEEEEEEEeCCCCceEEEEEE
Confidence 566788899999999997653 456799997
No 338
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=94.96 E-value=0.055 Score=30.53 Aligned_cols=27 Identities=19% Similarity=0.543 Sum_probs=22.4
Q ss_pred EEecCCcEEEEeeeecc-cCCeEEEEEC
Q psy6361 100 AIVVNHPMNISCSHYGV-PTPDFSWYKD 126 (148)
Q Consensus 100 ~~~~g~~~~l~C~~~g~-p~~~~~W~~~ 126 (148)
.+.+|+++.|.|..... +...+.|++.
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~ 29 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSYYIFWYRQ 29 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcceEEEEEE
Confidence 46689999999998776 6678999984
No 339
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=94.81 E-value=0.31 Score=26.43 Aligned_cols=35 Identities=11% Similarity=0.030 Sum_probs=27.3
Q ss_pred EEEEeeCC-EEecCCceEEEecCCCCCCEEEEEEEE
Q psy6361 37 IKRYLKDL-LYVTRNGSFVINNIAEKDTNVYTCTVS 71 (148)
Q Consensus 37 ~v~W~~~~-~~~~~~~~l~i~~~~~~d~g~y~C~~~ 71 (148)
.+.|+..+ +...............+|+|.+.|.|+
T Consensus 28 ~~~l~~~~~k~~~~~~~~~~~~~~~~d~G~w~C~a~ 63 (80)
T PF05790_consen 28 SLFLENPGKKSLETKKLVSTFTPTTEDSGTWVCTAS 63 (80)
T ss_dssp EEEEECSSCEEEEESSEEEEESBTCGGSEEEEEEEE
T ss_pred hheeeccCccccccceEEEEecCCCCCCEEEEEEEc
Confidence 57777766 455666677778888999999999994
No 340
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=94.77 E-value=0.095 Score=30.56 Aligned_cols=30 Identities=13% Similarity=0.407 Sum_probs=23.9
Q ss_pred CceEEEecCCcEEEEeeeeccc--CCeEEEEE
Q psy6361 96 QESVAIVVNHPMNISCSHYGVP--TPDFSWYK 125 (148)
Q Consensus 96 ~~~~~~~~g~~~~l~C~~~g~p--~~~~~W~~ 125 (148)
|....+.+|+++.|.|...+.. ...+.|||
T Consensus 4 ~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYk 35 (117)
T cd04981 4 SGPGLVKPGQSLKLSCKASGFTFTSYGVNWVR 35 (117)
T ss_pred CCCeEEcCCCCEEEEEEEeCCCcccceEEEEE
Confidence 6677889999999999875433 45699997
No 341
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=94.71 E-value=0.047 Score=30.62 Aligned_cols=26 Identities=15% Similarity=0.473 Sum_probs=20.8
Q ss_pred EEecCCcEEEEeeeecc--cCCeEEEEE
Q psy6361 100 AIVVNHPMNISCSHYGV--PTPDFSWYK 125 (148)
Q Consensus 100 ~~~~g~~~~l~C~~~g~--p~~~~~W~~ 125 (148)
.+.+|+++.|.|...+. ....+.||+
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~ 29 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQ 29 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEE
Confidence 45689999999998664 456799997
No 342
>KOG4597|consensus
Probab=94.32 E-value=0.063 Score=38.60 Aligned_cols=69 Identities=16% Similarity=0.133 Sum_probs=52.3
Q ss_pred EeeeccceeeeeecccCCCCcCCCCccEEEEeeCC----------------EEecCCceEEEecCCCCCCEEEEEEEEeC
Q psy6361 10 AMLLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDL----------------LYVTRNGSFVINNIAEKDTNVYTCTVSNA 73 (148)
Q Consensus 10 ~~~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~----------------~~~~~~~~l~i~~~~~~d~g~y~C~~~~~ 73 (148)
+-.++..+++|.+.|.+.+ .|+|.+.- ........|.|-+....|+|-|+|.+.+.
T Consensus 208 vg~wetcS~tCg~~G~q~r--------~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg 279 (560)
T KOG4597|consen 208 VGDWETCSSTCGVQGRQYR--------VVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSARCG 279 (560)
T ss_pred cccchhhcccccccCCcCc--------eeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeeccccc
Confidence 3457788999999999988 59997752 22233457888999999999999999999
Q ss_pred CCCcEEEEEEEEe
Q psy6361 74 AGSTSKTIQMNVL 86 (148)
Q Consensus 74 ~~~~~~~~~l~v~ 86 (148)
++...+.+.+.+.
T Consensus 280 ~g~~~rdv~c~s~ 292 (560)
T KOG4597|consen 280 AGFLRRDVPCSSV 292 (560)
T ss_pred cceeeccceeeee
Confidence 8876665555543
No 343
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=94.05 E-value=0.3 Score=26.70 Aligned_cols=26 Identities=19% Similarity=0.399 Sum_probs=20.0
Q ss_pred CCcEEEEeeeeccc--CCeEEEEECCEE
Q psy6361 104 NHPMNISCSHYGVP--TPDFSWYKDGSL 129 (148)
Q Consensus 104 g~~~~l~C~~~g~p--~~~~~W~~~g~~ 129 (148)
|+.+.|.|.+.+.+ ...+.|...+..
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~ 28 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKK 28 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcc
Confidence 67899999998765 447899876653
No 344
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=93.93 E-value=0.086 Score=30.02 Aligned_cols=27 Identities=11% Similarity=0.350 Sum_probs=20.9
Q ss_pred EEecCCcEEEEeeeecccCCeEEEEEC
Q psy6361 100 AIVVNHPMNISCSHYGVPTPDFSWYKD 126 (148)
Q Consensus 100 ~~~~g~~~~l~C~~~g~p~~~~~W~~~ 126 (148)
.+.+|+.|.|.|.........+.||+.
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq 28 (104)
T cd05720 2 DAELGQKVELKCEVLNSSPTGCSWLFQ 28 (104)
T ss_pred cccCCCeEEEEEEecCCCCCcEEEEEe
Confidence 356899999999976555567999973
No 345
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=93.92 E-value=0.28 Score=24.37 Aligned_cols=26 Identities=31% Similarity=0.782 Sum_probs=20.7
Q ss_pred EEEEeeeecccCCeEEEEECCEEeec
Q psy6361 107 MNISCSHYGVPTPDFSWYKDGSLLRI 132 (148)
Q Consensus 107 ~~l~C~~~g~p~~~~~W~~~g~~l~~ 132 (148)
+.+.|.+.+.+.+.+.|++++.....
T Consensus 1 ~~l~C~~~~~~~~~~~W~~~~~~~~~ 26 (74)
T cd00096 1 VTLTCLASGPPPPTITWLKNGKPLPS 26 (74)
T ss_pred CEEEEEecCCCCCcEEEEECCEECCC
Confidence 36789988877889999998877653
No 346
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=93.54 E-value=0.2 Score=28.58 Aligned_cols=27 Identities=19% Similarity=0.519 Sum_probs=20.8
Q ss_pred EEecCCcEEEEeeeecc-cCCeEEEEEC
Q psy6361 100 AIVVNHPMNISCSHYGV-PTPDFSWYKD 126 (148)
Q Consensus 100 ~~~~g~~~~l~C~~~g~-p~~~~~W~~~ 126 (148)
.+.+|+++.|.|...+. ....+.||+.
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq 29 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRW 29 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEE
Confidence 46689999999998664 3457999973
No 347
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=93.17 E-value=0.36 Score=27.27 Aligned_cols=30 Identities=17% Similarity=0.473 Sum_probs=24.7
Q ss_pred CceEEEecCCcEEEEeeee-cccCCeEEEEE
Q psy6361 96 QESVAIVVNHPMNISCSHY-GVPTPDFSWYK 125 (148)
Q Consensus 96 ~~~~~~~~g~~~~l~C~~~-g~p~~~~~W~~ 125 (148)
+....+.+|+++.|.|... ......+.|++
T Consensus 8 ~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~ 38 (114)
T PF07686_consen 8 PSPVTVQEGESVTLPCSYSSSSNQSSVYWYR 38 (114)
T ss_dssp ESEEEEETTSEEEEEEEEESSSSGSEEEEEE
T ss_pred CCeEEEecCCCEEEEEEEeCCCCcceEEEEE
Confidence 4567888999999999987 44566899998
No 348
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=93.15 E-value=0.16 Score=26.30 Aligned_cols=28 Identities=18% Similarity=0.490 Sum_probs=21.1
Q ss_pred ecCCcEEEEeeeecccCCeEEEEECCEEeec
Q psy6361 102 VVNHPMNISCSHYGVPTPDFSWYKDGSLLRI 132 (148)
Q Consensus 102 ~~g~~~~l~C~~~g~p~~~~~W~~~g~~l~~ 132 (148)
..|.+|.|+|+..+. .+.|++|+..+..
T Consensus 5 isGTtVtlTCP~~~~---~i~W~~n~~~~~g 32 (65)
T cd07692 5 ISGTTVTVTCPLSGD---DIKWKKNDQVSQG 32 (65)
T ss_pred EeccEEEEECCCCCC---CceEEeCCccCCC
Confidence 468899999986533 2899999866654
No 349
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=92.82 E-value=0.18 Score=28.54 Aligned_cols=31 Identities=19% Similarity=0.607 Sum_probs=23.1
Q ss_pred EEEecCCcEEEEeeeecc--c-CCeEEEEECCEE
Q psy6361 99 VAIVVNHPMNISCSHYGV--P-TPDFSWYKDGSL 129 (148)
Q Consensus 99 ~~~~~g~~~~l~C~~~g~--p-~~~~~W~~~g~~ 129 (148)
.....+..+.|.|.+.+. | ...+.|.++|..
T Consensus 14 e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~ 47 (99)
T cd04986 14 EDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK 47 (99)
T ss_pred HHhCcCCccEEEEEEeccCCCCCeEEEEEECCcc
Confidence 334467789999999884 3 348999999864
No 350
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=92.68 E-value=0.39 Score=27.82 Aligned_cols=30 Identities=13% Similarity=0.276 Sum_probs=22.6
Q ss_pred CceEEEecCCcEEEEeeeeccc----CCeEEEEE
Q psy6361 96 QESVAIVVNHPMNISCSHYGVP----TPDFSWYK 125 (148)
Q Consensus 96 ~~~~~~~~g~~~~l~C~~~g~p----~~~~~W~~ 125 (148)
|....+.+|+.+.|.|...... ...+.|++
T Consensus 5 p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~ 38 (116)
T cd05715 5 PREVYAVNGSDVRLKCTFSSSEPISDDISVTWSF 38 (116)
T ss_pred CCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEE
Confidence 5567788999999999875432 24699986
No 351
>PHA03052 Hypothetical protein; Provisional
Probab=92.37 E-value=0.88 Score=23.70 Aligned_cols=37 Identities=16% Similarity=0.390 Sum_probs=27.5
Q ss_pred CceEEEecCCcEEEEeee-ecc--cCCeEEEEECCEEeec
Q psy6361 96 QESVAIVVNHPMNISCSH-YGV--PTPDFSWYKDGSLLRI 132 (148)
Q Consensus 96 ~~~~~~~~g~~~~l~C~~-~g~--p~~~~~W~~~g~~l~~ 132 (148)
|....+.-|..+.+.|.+ .|. ..+.+.|..|+..+..
T Consensus 4 P~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~e~ 43 (69)
T PHA03052 4 PEGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYYEE 43 (69)
T ss_pred CccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEEec
Confidence 445567779999999996 333 3557889999999843
No 352
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=92.00 E-value=0.34 Score=27.04 Aligned_cols=29 Identities=21% Similarity=0.248 Sum_probs=22.1
Q ss_pred EEEecCCcEEEEeeeec-ccCCeEEEEECC
Q psy6361 99 VAIVVNHPMNISCSHYG-VPTPDFSWYKDG 127 (148)
Q Consensus 99 ~~~~~g~~~~l~C~~~g-~p~~~~~W~~~g 127 (148)
..+.+|+++.|.|.... .....+.|+|..
T Consensus 2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~ 31 (98)
T cd05716 2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWG 31 (98)
T ss_pred EEEEeCCeEEEEeeCCCCCCCcEeEeECCC
Confidence 35678999999998654 345678999753
No 353
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=91.98 E-value=0.44 Score=30.21 Aligned_cols=31 Identities=16% Similarity=0.399 Sum_probs=24.7
Q ss_pred eEEEecCCcEEEEeeee-cccCCeEEEEECCE
Q psy6361 98 SVAIVVNHPMNISCSHY-GVPTPDFSWYKDGS 128 (148)
Q Consensus 98 ~~~~~~g~~~~l~C~~~-g~p~~~~~W~~~g~ 128 (148)
...+.+|+++.|.|... +...+.+.|+|...
T Consensus 24 ~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~ 55 (189)
T PHA02987 24 KITVSEHVNVKISCNKTSSFNSILITWKKNNK 55 (189)
T ss_pred EEEEcCCCCEEEEEecCCCCccceEEEEEcCC
Confidence 45778999999999973 55677899998643
No 354
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=91.95 E-value=0.18 Score=27.65 Aligned_cols=25 Identities=16% Similarity=0.453 Sum_probs=19.9
Q ss_pred CCcEEEEeeeecccCCeEEEEECCE
Q psy6361 104 NHPMNISCSHYGVPTPDFSWYKDGS 128 (148)
Q Consensus 104 g~~~~l~C~~~g~p~~~~~W~~~g~ 128 (148)
|++|.|.|.........+.|+++..
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~ 25 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKD 25 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCC
Confidence 6889999997766666899998653
No 355
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=91.76 E-value=0.22 Score=28.53 Aligned_cols=31 Identities=10% Similarity=0.213 Sum_probs=23.2
Q ss_pred CceEEEecCCcEEEEeeeecccCCeEEEEEC
Q psy6361 96 QESVAIVVNHPMNISCSHYGVPTPDFSWYKD 126 (148)
Q Consensus 96 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~ 126 (148)
+.+..+.+|+++.|.|.........+.|||+
T Consensus 5 ~~p~~~~~G~~V~L~v~~~p~~~~~~~W~kg 35 (105)
T cd05774 5 LVPPQVAEGENVLLLVHNLPENLLAYAWYKG 35 (105)
T ss_pred ccCCcccCCCCEEEEecCCCCCceEEEEEcC
Confidence 4456778899999999754334448999996
No 356
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=91.69 E-value=0.64 Score=26.98 Aligned_cols=30 Identities=17% Similarity=0.330 Sum_probs=22.2
Q ss_pred CceEEEecCCcEEEEeeeeccc----CCeEEEEE
Q psy6361 96 QESVAIVVNHPMNISCSHYGVP----TPDFSWYK 125 (148)
Q Consensus 96 ~~~~~~~~g~~~~l~C~~~g~p----~~~~~W~~ 125 (148)
+....+.+|+++.|.|.....+ ...+.|++
T Consensus 5 ~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~ 38 (115)
T cd05880 5 SKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNF 38 (115)
T ss_pred CceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEE
Confidence 4567888999999999965432 23699974
No 357
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=91.66 E-value=0.61 Score=27.18 Aligned_cols=31 Identities=26% Similarity=0.300 Sum_probs=22.9
Q ss_pred CceEEEecCCcEEEEeeeeccc------CCeEEEEEC
Q psy6361 96 QESVAIVVNHPMNISCSHYGVP------TPDFSWYKD 126 (148)
Q Consensus 96 ~~~~~~~~g~~~~l~C~~~g~p------~~~~~W~~~ 126 (148)
|....+.+|+.|.|.|...... ...+.||+.
T Consensus 6 P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq 42 (119)
T cd05712 6 PKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKG 42 (119)
T ss_pred CCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeC
Confidence 5667888999999999754221 246889974
No 358
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=91.24 E-value=0.36 Score=27.08 Aligned_cols=22 Identities=23% Similarity=0.480 Sum_probs=18.3
Q ss_pred CcEEEEeee-ecccCCeEEEEEC
Q psy6361 105 HPMNISCSH-YGVPTPDFSWYKD 126 (148)
Q Consensus 105 ~~~~l~C~~-~g~p~~~~~W~~~ 126 (148)
....+.|.+ .|.|.+.++|+++
T Consensus 16 ~~~va~C~s~~gkP~a~ItW~~~ 38 (95)
T cd05719 16 PVTVATCVSANGKPPATISWETT 38 (95)
T ss_pred ccEEEEEECCCCcCCCEEEEEeC
Confidence 346788997 6789999999997
No 359
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=91.12 E-value=0.5 Score=26.69 Aligned_cols=28 Identities=21% Similarity=0.519 Sum_probs=21.7
Q ss_pred EEEecCCcEEE-Eeee-ecccCCeEEEEEC
Q psy6361 99 VAIVVNHPMNI-SCSH-YGVPTPDFSWYKD 126 (148)
Q Consensus 99 ~~~~~g~~~~l-~C~~-~g~p~~~~~W~~~ 126 (148)
..+.+|..+.+ .|.+ .|.|.+.+.|+.+
T Consensus 11 ~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~ 40 (97)
T cd07704 11 LLIDGGNGTTLAACCAAEGRPAADVTWETN 40 (97)
T ss_pred eEeecCcceeEEEEEccCCccCCEeEEeCC
Confidence 34556777777 8885 6789999999986
No 360
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=90.66 E-value=0.89 Score=25.14 Aligned_cols=28 Identities=11% Similarity=0.227 Sum_probs=21.8
Q ss_pred eEEEecCCcEEEEeeeecc--cCCeEEEEE
Q psy6361 98 SVAIVVNHPMNISCSHYGV--PTPDFSWYK 125 (148)
Q Consensus 98 ~~~~~~g~~~~l~C~~~g~--p~~~~~W~~ 125 (148)
...+..|+++.|.|..... |.+.+.|+.
T Consensus 8 ~~~lL~G~sLtLtl~~~s~s~p~~~i~w~~ 37 (88)
T cd07694 8 SDHVLSGTNLTLTLHGSSNSLPAFKVEWRG 37 (88)
T ss_pred CCeeecCCcEEEEEecCCCCCCCccEEEeC
Confidence 4567789999999998543 455999995
No 361
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=89.85 E-value=0.71 Score=26.12 Aligned_cols=25 Identities=16% Similarity=0.243 Sum_probs=18.6
Q ss_pred cCCcEEEEeeeeccc------CCeEEEEECC
Q psy6361 103 VNHPMNISCSHYGVP------TPDFSWYKDG 127 (148)
Q Consensus 103 ~g~~~~l~C~~~g~p------~~~~~W~~~g 127 (148)
.|+++.|.|.....| ...+.|+|..
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~ 31 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLE 31 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEec
Confidence 478999999876542 3479999853
No 362
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=89.84 E-value=0.59 Score=26.26 Aligned_cols=22 Identities=23% Similarity=0.434 Sum_probs=18.1
Q ss_pred CcEEEEeee-ecccCCeEEEEEC
Q psy6361 105 HPMNISCSH-YGVPTPDFSWYKD 126 (148)
Q Consensus 105 ~~~~l~C~~-~g~p~~~~~W~~~ 126 (148)
....+.|.+ .|.|.+.++|+++
T Consensus 16 ~~~va~C~s~~gkPaa~IsW~~~ 38 (95)
T cd07703 16 PVPVAKCVSANGRPPARISWSST 38 (95)
T ss_pred ccEEEEEEcCCCCCCcEEEEEcC
Confidence 457889986 5779999999987
No 363
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=89.15 E-value=0.87 Score=25.78 Aligned_cols=24 Identities=21% Similarity=0.477 Sum_probs=18.7
Q ss_pred cCCcEEEEeeeeccc------CCeEEEEEC
Q psy6361 103 VNHPMNISCSHYGVP------TPDFSWYKD 126 (148)
Q Consensus 103 ~g~~~~l~C~~~g~p------~~~~~W~~~ 126 (148)
.|+++.|.|.....+ ...+.|++.
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~ 30 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKL 30 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEe
Confidence 378999999976542 468999986
No 364
>KOG0613|consensus
Probab=89.13 E-value=0.45 Score=38.43 Aligned_cols=116 Identities=16% Similarity=0.175 Sum_probs=72.0
Q ss_pred eeeEeeeccceeeeeecccCCCCcCCCCccEEEEeeCC-------------EEecCCceEEEecCCCCCCEEEEEEEEeC
Q psy6361 7 VEQAMLLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDL-------------LYVTRNGSFVINNIAEKDTNVYTCTVSNA 73 (148)
Q Consensus 7 ~~~~~~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~-------------~~~~~~~~l~i~~~~~~d~g~y~C~~~~~ 73 (148)
...+.-+..+.+.|...+...|. .+.|++++ ........+.+..+...+.+.|.|.+.|.
T Consensus 343 ~v~a~d~~~v~m~~~~~~~~~p~-------~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~ 415 (1205)
T KOG0613|consen 343 SVTARDNTLVEMPTALSGTQKPD-------EAQGYHGEEVSSESLGALPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNK 415 (1205)
T ss_pred eeccccCcceeecccccCCcCCc-------hheeecccccccccccccccccccccCcchhhhhcCcccccccccceecc
Confidence 34455566678899988888885 68899986 22233456778888889999999999998
Q ss_pred CCCcEEEEEEEEec------CCEEEeCCCceEEEec--CCcEEEEeeeeccc--CCeEEEEECCEEee
Q psy6361 74 AGSTSKTIQMNVLV------PPFFKDEQQESVAIVV--NHPMNISCSHYGVP--TPDFSWYKDGSLLR 131 (148)
Q Consensus 74 ~~~~~~~~~l~v~~------~p~~~~~~~~~~~~~~--g~~~~l~C~~~g~p--~~~~~W~~~g~~l~ 131 (148)
.+.........+.. ++.+... ....... -+.+...|...+.+ .+.++|++++....
T Consensus 416 ~g~~~~~~~~~vs~~~~gt~~~~~kk~--~~~t~~L~~~~~i~~~~~~~s~~~~~~~~tt~~~~~~~s 481 (1205)
T KOG0613|consen 416 GGTEQTIAESTVSEEMPGTQPPKFKKD--VSTTDLLTVKDEITVRTPDSSTSMPMTTVTTIKDGLPLS 481 (1205)
T ss_pred CCcccccchhhcccccCCCCCcccccc--ccccccccCCcccccccCCCCccccceeEeeccCCcccc
Confidence 87633222222221 1222211 1122222 25677888887776 44666777665544
No 365
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=88.97 E-value=0.43 Score=26.73 Aligned_cols=26 Identities=8% Similarity=0.186 Sum_probs=19.8
Q ss_pred cCCcEEEEeeeec-ccCCeEEEEECCE
Q psy6361 103 VNHPMNISCSHYG-VPTPDFSWYKDGS 128 (148)
Q Consensus 103 ~g~~~~l~C~~~g-~p~~~~~W~~~g~ 128 (148)
.|++|.|.|.... .....+.|+++..
T Consensus 3 ~G~sVtL~c~~~~~~~~~~v~W~~~~~ 29 (97)
T cd05775 3 LGGSVTLPLNIPDGTEIESITWSFNTS 29 (97)
T ss_pred cCCeEEEeCCCCCCcEEEEEEEecCCE
Confidence 6899999998754 4455899998653
No 366
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=88.46 E-value=0.95 Score=26.24 Aligned_cols=24 Identities=17% Similarity=0.351 Sum_probs=17.6
Q ss_pred cCCcEEEEeeeeccc------------CCeEEEEEC
Q psy6361 103 VNHPMNISCSHYGVP------------TPDFSWYKD 126 (148)
Q Consensus 103 ~g~~~~l~C~~~g~p------------~~~~~W~~~ 126 (148)
.|+++.|.|...... .+.+.|+|.
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~ 36 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFI 36 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEe
Confidence 378999999865322 458999984
No 367
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=88.38 E-value=2.8 Score=23.00 Aligned_cols=28 Identities=18% Similarity=0.275 Sum_probs=19.2
Q ss_pred cEEEEeeeecccCCeEEEEECCEEeecCC
Q psy6361 106 PMNISCSHYGVPTPDFSWYKDGSLLRIQS 134 (148)
Q Consensus 106 ~~~l~C~~~g~p~~~~~W~~~g~~l~~~~ 134 (148)
...+.+.+.+. ...+.||.||..+....
T Consensus 31 ~~~l~l~a~~~-~~~~~W~vdg~~~g~~~ 58 (89)
T PF06832_consen 31 RQPLVLKAAGG-RGPVYWFVDGEPLGTTQ 58 (89)
T ss_pred cceEEEEEeCC-CCcEEEEECCEEcccCC
Confidence 45555665555 44899999999995433
No 368
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=87.29 E-value=2.9 Score=29.29 Aligned_cols=23 Identities=4% Similarity=0.167 Sum_probs=18.6
Q ss_pred cceeeeeecccCCCCcCCCCccEEEEeeC
Q psy6361 15 LIPMHSRYNYTNLPQSRNPGQVIKRYLKD 43 (148)
Q Consensus 15 ~~~l~C~~~~~~~p~~~~~~~~~v~W~~~ 43 (148)
.++|.|.+.+-.+.. +.++|.|+
T Consensus 216 ~~tL~C~A~GFYP~~------I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSS------VAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCc------cEEEEEec
Confidence 578999999986553 37899999
No 369
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=87.24 E-value=1.2 Score=25.20 Aligned_cols=32 Identities=19% Similarity=0.378 Sum_probs=24.0
Q ss_pred EEecCCcEEEEeeeec-ccC--CeEEEEECCEEee
Q psy6361 100 AIVVNHPMNISCSHYG-VPT--PDFSWYKDGSLLR 131 (148)
Q Consensus 100 ~~~~g~~~~l~C~~~g-~p~--~~~~W~~~g~~l~ 131 (148)
...+|..+.+.|.+.+ +|. ..+.|+++...+.
T Consensus 11 ~l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~ 45 (99)
T cd07689 11 PLEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLP 45 (99)
T ss_pred cccCCceEEEEEEecCcccCCceEEEEecCcceec
Confidence 3478999999999864 454 5789998776554
No 370
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=85.11 E-value=1.9 Score=24.74 Aligned_cols=23 Identities=22% Similarity=0.483 Sum_probs=17.5
Q ss_pred CCcEEEEeeeeccc----------CCeEEEEEC
Q psy6361 104 NHPMNISCSHYGVP----------TPDFSWYKD 126 (148)
Q Consensus 104 g~~~~l~C~~~g~p----------~~~~~W~~~ 126 (148)
|+++.|.|.....+ ...+.|+|.
T Consensus 2 G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~ 34 (110)
T cd05878 2 SSSVLLPCYFTLPPALPPPSNAPESPRIKWTKL 34 (110)
T ss_pred CCCEEEeeEeeCCccccccccCCCCCEEEEEEe
Confidence 78899999975543 357999984
No 371
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=84.46 E-value=1.9 Score=23.98 Aligned_cols=24 Identities=8% Similarity=0.372 Sum_probs=15.1
Q ss_pred CCcEEEEeeeeccc---CCeEEEEECC
Q psy6361 104 NHPMNISCSHYGVP---TPDFSWYKDG 127 (148)
Q Consensus 104 g~~~~l~C~~~g~p---~~~~~W~~~g 127 (148)
|++|.|.|...... ...+.|++..
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~ 27 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQ 27 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECC
Confidence 67888999864221 2257787744
No 372
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=82.16 E-value=4.8 Score=23.57 Aligned_cols=29 Identities=17% Similarity=0.009 Sum_probs=20.2
Q ss_pred ceEEEecCCcEEEEeeeecccC---CeEEEEE
Q psy6361 97 ESVAIVVNHPMNISCSHYGVPT---PDFSWYK 125 (148)
Q Consensus 97 ~~~~~~~g~~~~l~C~~~g~p~---~~~~W~~ 125 (148)
...-+..|..+.|+|..+|... -.+.|+|
T Consensus 6 ~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvR 37 (115)
T cd05721 6 SPVLASSNGAASLVCEYTYNGFSKEFRASLLK 37 (115)
T ss_pred CCeEEcCCCCEEEEEEecCCccccEEEEEEEE
Confidence 3455667788999999866432 3577887
No 373
>PHA03240 envelope glycoprotein M; Provisional
Probab=81.10 E-value=3.9 Score=26.60 Aligned_cols=20 Identities=20% Similarity=0.418 Sum_probs=15.6
Q ss_pred CCceEEEecCCCCCCEEEEE
Q psy6361 49 RNGSFVINNIAEKDTNVYTC 68 (148)
Q Consensus 49 ~~~~l~i~~~~~~d~g~y~C 68 (148)
.+.+|.|.++..+|.|+|.-
T Consensus 103 ~NstL~i~~vn~sd~~nYcr 122 (258)
T PHA03240 103 HNSTLIIAHLNLSDAGEYCR 122 (258)
T ss_pred ccceEEEEEEeecCcchhhh
Confidence 34678888999999999743
No 374
>PHA03270 envelope glycoprotein C; Provisional
Probab=80.08 E-value=21 Score=26.14 Aligned_cols=33 Identities=3% Similarity=-0.138 Sum_probs=25.4
Q ss_pred eeeEeeeccceeeeeecccCCCCcCCCCccEEEEeeCC
Q psy6361 7 VEQAMLLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDL 44 (148)
Q Consensus 7 ~~~~~~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~ 44 (148)
...++.|+.-.-.|.+-...+|. ...++||+++
T Consensus 228 ~~PvL~Ge~Y~AtC~va~YYPp~-----Sv~lrWf~ng 260 (466)
T PHA03270 228 PHAVLEGEPFGATCVAANYYPGD-----RAAFRWFEGG 260 (466)
T ss_pred CCccccCCCceEEEEeeeecCCC-----ceEEEEEeCC
Confidence 34567788888899998776664 2379999997
No 375
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=79.62 E-value=7.5 Score=22.67 Aligned_cols=28 Identities=25% Similarity=0.539 Sum_probs=21.0
Q ss_pred CceEEEecCCcEEEEeeeecc----cCCeEEE
Q psy6361 96 QESVAIVVNHPMNISCSHYGV----PTPDFSW 123 (148)
Q Consensus 96 ~~~~~~~~g~~~~l~C~~~g~----p~~~~~W 123 (148)
+....+..|+.+.|.|..... +...+.|
T Consensus 5 ~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W 36 (116)
T cd05879 5 DREVYGTVGSDVTLSCSFWSSEWISDDISFTW 36 (116)
T ss_pred cceEEEEcCCcEEEEEEEecCCCCCCcEEEEE
Confidence 345677889999999997543 3458999
No 376
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=78.04 E-value=9.6 Score=21.13 Aligned_cols=36 Identities=17% Similarity=0.327 Sum_probs=24.5
Q ss_pred CceEEEecCCcEEEEeeeec-----ccCCeEEEEECCEEee
Q psy6361 96 QESVAIVVNHPMNISCSHYG-----VPTPDFSWYKDGSLLR 131 (148)
Q Consensus 96 ~~~~~~~~g~~~~l~C~~~g-----~p~~~~~W~~~g~~l~ 131 (148)
++...+..|..+..+|.... .....+.|..|+..+.
T Consensus 10 p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP 50 (89)
T PF06328_consen 10 PPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIP 50 (89)
T ss_dssp CSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCEST
T ss_pred cCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECC
Confidence 45566778999999998632 2455888998888543
No 377
>PHA03273 envelope glycoprotein C; Provisional
Probab=75.91 E-value=29 Score=25.63 Aligned_cols=33 Identities=12% Similarity=-0.044 Sum_probs=25.4
Q ss_pred eeeEeeeccceeeeeecccCCCCcCCCCccEEEEeeCC
Q psy6361 7 VEQAMLLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDL 44 (148)
Q Consensus 7 ~~~~~~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~ 44 (148)
...++.|+.-.-.|.+....+|. ...++||+++
T Consensus 244 ~~PvL~Ge~y~A~C~aa~YYPp~-----Sv~~rWf~dg 276 (486)
T PHA03273 244 VHPSLKGENYRAVCVVASYFPHS-----SVKLRWYKNA 276 (486)
T ss_pred CCccccCCCceEEEEeeeecCCC-----ceEEEEEeCC
Confidence 34567888888999998776654 3479999997
No 378
>PHA03271 envelope glycoprotein C; Provisional
Probab=71.45 E-value=37 Score=24.85 Aligned_cols=33 Identities=6% Similarity=-0.089 Sum_probs=25.5
Q ss_pred eeeEeeeccceeeeeecccCCCCcCCCCccEEEEeeCC
Q psy6361 7 VEQAMLLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDL 44 (148)
Q Consensus 7 ~~~~~~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~ 44 (148)
...++.|+.-.-.|.+....+|. ...++||++|
T Consensus 254 a~PVL~Ge~YkAtC~vAnYYPP~-----SvrlrWf~nG 286 (490)
T PHA03271 254 APPVLSGENYKASCIVRHFYPPG-----SVYVSWRQNG 286 (490)
T ss_pred CCccccCCCceEEEEeeeecCCC-----ceEEEEEeCC
Confidence 34567788888899998776664 2379999998
No 379
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=64.16 E-value=29 Score=21.70 Aligned_cols=24 Identities=21% Similarity=0.160 Sum_probs=19.9
Q ss_pred ceEEEecCCCCCCEEEEEEEEeCC
Q psy6361 51 GSFVINNIAEKDTNVYTCTVSNAA 74 (148)
Q Consensus 51 ~~l~i~~~~~~d~g~y~C~~~~~~ 74 (148)
.-|.|.+.+.+|+|.|.-++.-..
T Consensus 124 ~lL~i~~p~~~dsG~Y~lRV~l~~ 147 (161)
T PF01688_consen 124 VLLRIRNPRPEDSGIYYLRVWLDG 147 (161)
T ss_pred eEEEeCCCCcccceEEEEEEEECC
Confidence 458999999999999999877443
No 380
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=61.86 E-value=1.4e+02 Score=27.95 Aligned_cols=73 Identities=11% Similarity=0.070 Sum_probs=49.3
Q ss_pred CCCCCCEEEEEE--EEeCCCCcEEEEEEEEecCCEEEeCCCceEEEecCCcEEEEeeeecccCCeEEEEE-CCEEe
Q psy6361 58 IAEKDTNVYTCT--VSNAAGSTSKTIQMNVLVPPFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYK-DGSLL 130 (148)
Q Consensus 58 ~~~~d~g~y~C~--~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~-~g~~l 130 (148)
.+..++|.|+.. +.|..+.......+.|..++.-.........+..|+.+.+.+.......-.+.|.. ++...
T Consensus 1834 ~Tf~~aG~ytV~L~AsN~vs~~~~s~~~~VQe~I~~L~L~as~~~~~~n~~v~fsa~l~~GS~Vtf~w~fGdgs~~ 1909 (2740)
T TIGR00864 1834 MTFPDAGTFAIRLNASNAVSGKSASREFFAEEPIFGLELKASKKIAAIGEKVEFQILLAAGSAVNFRLQIGGAAPE 1909 (2740)
T ss_pred EecCCCeEEEEEEEEEcccCcceeeeeEEEEEecceEEEecccccccCCCEEEEEEEecCCCceEEEEEeCCCCce
Confidence 356789999886 56777776667777777665333221445567788999999986555567888875 44433
No 381
>PHA03282 envelope glycoprotein E; Provisional
Probab=61.23 E-value=34 Score=25.43 Aligned_cols=32 Identities=25% Similarity=0.389 Sum_probs=24.6
Q ss_pred EEEeeCCEEecCCceEEEecCCCCCCEEEEEEEE
Q psy6361 38 KRYLKDLLYVTRNGSFVINNIAEKDTNVYTCTVS 71 (148)
Q Consensus 38 v~W~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~ 71 (148)
+-| +.+....+.+|.|.++..+|+|.|+-.+.
T Consensus 113 ~~~--~~rvs~~n~tl~l~~a~~~DsG~Y~L~~~ 144 (540)
T PHA03282 113 FAW--PPRVAVVNGTLVLREARETDSGMYVLSVS 144 (540)
T ss_pred ccc--CcceeEecceEEEeeccccCCceEEEEec
Confidence 445 33445557789999999999999999864
No 382
>KOG0613|consensus
Probab=60.36 E-value=37 Score=28.45 Aligned_cols=113 Identities=12% Similarity=0.015 Sum_probs=62.9
Q ss_pred eeccceeeeeecccCCCCcCCCCccEEEEeeCC----EEecCCceEEEecCCCCCCEEEEEEEEeCCCCcEEEEEEEEe-
Q psy6361 12 LLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDL----LYVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVL- 86 (148)
Q Consensus 12 ~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~----~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~- 86 (148)
.+....+.|.+.....+. +.|+.+. ..........+.+-...+.+.|+|...+..+.....+.-.+.
T Consensus 243 e~s~~~i~~~l~~~~G~~--------~~~~~~~l~e~~~~~~~~t~~i~~~~~~~~~s~t~~~~~~~~q~~~~v~~~~~i 314 (1205)
T KOG0613|consen 243 EASDRKIQLTLRAPRGPY--------SAHILGYLIEQRKHKGGNTKTIQNDGPEPELSWTVADKRQGCQDRFKVTEEAPI 314 (1205)
T ss_pred chhheeeeEEeecCCCch--------HHHHhcchhhhcccCCCccccccccCCccccceeeecccCCcccceeeeEEeec
Confidence 334445566666665552 4454443 112334456666666777788888877766553332222221
Q ss_pred ---------------cCCEEEeCC--CceEEEecCCcEEEEeeeecccCCe-EEEEECCEEeec
Q psy6361 87 ---------------VPPFFKDEQ--QESVAIVVNHPMNISCSHYGVPTPD-FSWYKDGSLLRI 132 (148)
Q Consensus 87 ---------------~~p~~~~~~--~~~~~~~~g~~~~l~C~~~g~p~~~-~~W~~~g~~l~~ 132 (148)
.+|...... ...+....+..+.+.|...+...|. ++||+++.....
T Consensus 315 ~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~~ 378 (1205)
T KOG0613|consen 315 GKGKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPTALSGTQKPDEAQGYHGEEVSSE 378 (1205)
T ss_pred cccccCchhhhhhccCCccccccccccceeccccCcceeecccccCCcCCchheeecccccccc
Confidence 122222111 2233344556789999999988775 999987765543
No 383
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=60.18 E-value=65 Score=23.58 Aligned_cols=40 Identities=23% Similarity=0.355 Sum_probs=28.1
Q ss_pred eEEEecCCCCCCEEEEEEEEeCCCCcEEEEEEEEecCCEEE
Q psy6361 52 SFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFK 92 (148)
Q Consensus 52 ~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~ 92 (148)
.+.+.+++..|.|.|.|.+.-... .+..-.+.+.+.|.+.
T Consensus 82 sf~~~Nvs~sdEGrYrCIFYLn~~-EtyrH~I~vrVmPKId 121 (500)
T PHA02914 82 SFIEENIGEHEDGDFKCIFYLGDN-ESHKHEILVRKAPKID 121 (500)
T ss_pred EEEecCcccccCCcEEEEEEeCCc-eeEEEEEEEEEcccee
Confidence 577788999999999999875332 3333455666667766
No 384
>PHA02935 Hypothetical protein; Provisional
Probab=59.98 E-value=31 Score=22.44 Aligned_cols=60 Identities=22% Similarity=0.255 Sum_probs=30.2
Q ss_pred eEEEecCCCCCCEEEEEEEEeCCCCcEEEEEEEEecCCEEEeCCCceE-EEecC-CcEEEEeee
Q psy6361 52 SFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKDEQQESV-AIVVN-HPMNISCSH 113 (148)
Q Consensus 52 ~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~-~~~~g-~~~~l~C~~ 113 (148)
-|.|.+++.+|+|.|.-...-..|. .....+.+.++..+.-. .... ..... -.+.+.|+.
T Consensus 103 clnisslryedsgsykgvshlkdgv-ivtttmnisvkaniidl-tgrvryltrnycevkircei 164 (349)
T PHA02935 103 CLNISSLRYEDSGSYKGVSHLKDGV-IVTTTMNISVKANIIDL-TGRVRYLTRNYCEVKIRCEI 164 (349)
T ss_pred EeeccceeeccCCcccCchhhcCce-EEEEEEEEEEEeeeEec-cceeeeeccccEEEEEEEEE
Confidence 3556777789999998764444443 22223333333333322 2222 22222 357788875
No 385
>PHA03290 envelope glycoprotein I; Provisional
Probab=55.56 E-value=45 Score=23.59 Aligned_cols=25 Identities=24% Similarity=0.227 Sum_probs=20.6
Q ss_pred CceEEEecCCCCCCEEEEEEEEeCC
Q psy6361 50 NGSFVINNIAEKDTNVYTCTVSNAA 74 (148)
Q Consensus 50 ~~~l~i~~~~~~d~g~y~C~~~~~~ 74 (148)
..-|.|.+.+.+|+|.|.-++.-..
T Consensus 128 ~vLL~I~~P~~~DSGiY~LRV~Ldg 152 (357)
T PHA03290 128 EIIFKINKPGIEDAGIYLLLVQLDH 152 (357)
T ss_pred ceEEEeCCCCcccCeeEEEEEEeCC
Confidence 3468899999999999999987543
No 386
>PHA03269 envelope glycoprotein C; Provisional
Probab=49.67 E-value=1.1e+02 Score=23.09 Aligned_cols=33 Identities=15% Similarity=0.210 Sum_probs=25.4
Q ss_pred eeeEeeeccceeeeeecccCCCCcCCCCccEEEEeeCC
Q psy6361 7 VEQAMLLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDL 44 (148)
Q Consensus 7 ~~~~~~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~ 44 (148)
..-++.|+.-.-.|.+....+|. ...++||+++
T Consensus 336 p~PVL~Ge~YkAtC~vA~YYPp~-----SvrlrWf~ng 368 (566)
T PHA03269 336 GDPVLLGNPYAAYCKVNKYYPPH-----SVIVKWTSNF 368 (566)
T ss_pred CCccccCCCceEEEEeeeecCCC-----ceEEEEEeCC
Confidence 34577888888999998776664 3479999996
No 387
>PHA03264 envelope glycoprotein D; Provisional
Probab=49.08 E-value=89 Score=22.64 Aligned_cols=23 Identities=9% Similarity=0.072 Sum_probs=15.2
Q ss_pred CceEEEecCCCCCCEEEEEEEEe
Q psy6361 50 NGSFVINNIAEKDTNVYTCTVSN 72 (148)
Q Consensus 50 ~~~l~i~~~~~~d~g~y~C~~~~ 72 (148)
.-.|.|..-...++|+|+-.+.-
T Consensus 157 ELGLvmAAPA~~~~GqYrRvI~I 179 (416)
T PHA03264 157 ELGLLMAAPARLNEGQYRRALYI 179 (416)
T ss_pred ccceEEecCCcccCceEEEEEEE
Confidence 34566666677778888776553
No 388
>PF11049 KSHV_K1: Glycoprotein K1 of Kaposi's sarcoma-associated herpes virus; InterPro: IPR021022 This is a highly glycosylated cytoplasmic and membrane protein similar to the immunoglobulin receptor family that is expressed as an inducible early-lytic-cycle gene product in primary effusion lymphoma cell-lines. This domain would appear to be the cytoplasmic region of the protein [].
Probab=47.68 E-value=41 Score=17.56 Aligned_cols=48 Identities=13% Similarity=0.245 Sum_probs=26.9
Q ss_pred EEEeeCC--EEecCCceEEEecCCCCCCEEEEEEEEeCCCCcEEEEEEEEecCCEEE
Q psy6361 38 KRYLKDL--LYVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFK 92 (148)
Q Consensus 38 v~W~~~~--~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~ 92 (148)
+.||-++ ........+.+.++ .++|+|..+.. ...++-++-...|...
T Consensus 13 iswYcN~TRLlRlt~~Tlt~~~l----tcNFtCV~qSG---h~hSiWItW~~qPVLQ 62 (71)
T PF11049_consen 13 ISWYCNGTRLLRLTQQTLTVVTL----TCNFTCVGQSG---HRHSIWITWYAQPVLQ 62 (71)
T ss_pred ccEEECCceeeeecCCeEeeeee----eEEeeecCCCC---CCceEEEEEcCchhhh
Confidence 7899998 22333445555433 57889964322 3344555555555443
No 389
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=46.54 E-value=55 Score=18.61 Aligned_cols=20 Identities=10% Similarity=0.051 Sum_probs=13.5
Q ss_pred eeeeeecccCCCCcCCCCccEEEEeeC
Q psy6361 17 PMHSRYNYTNLPQSRNPGQVIKRYLKD 43 (148)
Q Consensus 17 ~l~C~~~~~~~p~~~~~~~~~v~W~~~ 43 (148)
.-.|...+..+|. .|+|.-+
T Consensus 24 VA~CiSa~GrPpa-------~ItW~t~ 43 (98)
T cd05890 24 VATCVSANGKPPS-------VVRWDTR 43 (98)
T ss_pred EEEEEcCCCcCCc-------EeEEEcc
Confidence 4589865555554 7999764
No 390
>PHA03265 envelope glycoprotein D; Provisional
Probab=44.92 E-value=1.2e+02 Score=21.90 Aligned_cols=25 Identities=12% Similarity=0.182 Sum_probs=17.9
Q ss_pred CCceEEEecCCCCCCEEEEEEEEeC
Q psy6361 49 RNGSFVINNIAEKDTNVYTCTVSNA 73 (148)
Q Consensus 49 ~~~~l~i~~~~~~d~g~y~C~~~~~ 73 (148)
+.-.|.+..-....+|.|+-.+.-.
T Consensus 168 DELGLvmAAPA~~~~GqYrRlI~In 192 (402)
T PHA03265 168 DELGLVLAAPAHSASGLYRRVIEID 192 (402)
T ss_pred cccceEEecCCcccCceEEEEEEEC
Confidence 3456777777788889998776543
No 391
>PHA03282 envelope glycoprotein E; Provisional
Probab=42.96 E-value=35 Score=25.38 Aligned_cols=23 Identities=17% Similarity=0.401 Sum_probs=20.2
Q ss_pred CceEEEecCCCCCCEEEEEEEEe
Q psy6361 50 NGSFVINNIAEKDTNVYTCTVSN 72 (148)
Q Consensus 50 ~~~l~i~~~~~~d~g~y~C~~~~ 72 (148)
+..|.+.++...++|.|.|.+..
T Consensus 332 ~VdL~F~nAp~saSGLYVfVl~y 354 (540)
T PHA03282 332 TVNLQLRDASEASGGLYVCVVYV 354 (540)
T ss_pred ccceEecCCCcccCceEEEEEEE
Confidence 45899999999999999999864
No 392
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=40.63 E-value=1.1e+02 Score=20.27 Aligned_cols=21 Identities=19% Similarity=0.411 Sum_probs=12.7
Q ss_pred Eeeeeccc--CCeEEEEECCEEe
Q psy6361 110 SCSHYGVP--TPDFSWYKDGSLL 130 (148)
Q Consensus 110 ~C~~~g~p--~~~~~W~~~g~~l 130 (148)
.|.+..-| ...+.|..++...
T Consensus 95 VC~A~CVP~~~v~l~W~v~d~~~ 117 (211)
T PF02124_consen 95 VCTARCVPRGNVTLRWSVGDDPS 117 (211)
T ss_pred EEEcceeeCCCeEEEEEECCccC
Confidence 35544433 2479999877653
No 393
>PHA03283 envelope glycoprotein E; Provisional
Probab=40.19 E-value=1.2e+02 Score=23.08 Aligned_cols=38 Identities=18% Similarity=0.163 Sum_probs=27.7
Q ss_pred CCceEEEecCCCCCCEEEEEEEEeCCCCcEEEEEEEEe
Q psy6361 49 RNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVL 86 (148)
Q Consensus 49 ~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~ 86 (148)
....|.|.+++.+++|.|+-..++..+.....+.+.|.
T Consensus 132 ~~~~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk 169 (542)
T PHA03283 132 ERSVLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVK 169 (542)
T ss_pred CCCeeEEEecccccCeEEEEEecCCCceEEEEEEEEec
Confidence 35679999999999999999888765533333445554
No 394
>PHA03289 envelope glycoprotein I; Provisional
Probab=39.14 E-value=1.1e+02 Score=21.62 Aligned_cols=24 Identities=29% Similarity=0.187 Sum_probs=20.0
Q ss_pred ceEEEecCCCCCCEEEEEEEEeCC
Q psy6361 51 GSFVINNIAEKDTNVYTCTVSNAA 74 (148)
Q Consensus 51 ~~l~i~~~~~~d~g~y~C~~~~~~ 74 (148)
.-|.|.+.+++|+|.|.-++.-..
T Consensus 122 vLL~I~~Pr~~DSGiYyLRV~Ldg 145 (352)
T PHA03289 122 LLLTIIEPRMSDTGIYYIRVSLAG 145 (352)
T ss_pred eEEEeCCCCcccCeeEEEEEEeCC
Confidence 468899999999999999887543
No 395
>KOG3611|consensus
Probab=38.98 E-value=64 Score=25.70 Aligned_cols=23 Identities=22% Similarity=0.569 Sum_probs=18.7
Q ss_pred ceEEEecCCCCCCEEEEEEEEeC
Q psy6361 51 GSFVINNIAEKDTNVYTCTVSNA 73 (148)
Q Consensus 51 ~~l~i~~~~~~d~g~y~C~~~~~ 73 (148)
+.+.+..+...|.|.|.|.+...
T Consensus 612 G~lll~~~q~~~~G~y~c~~~e~ 634 (737)
T KOG3611|consen 612 GGLVLLSVQKLDGGTYPCYADES 634 (737)
T ss_pred CceeEEEEeeccCcccccccccC
Confidence 44778888999999999987653
No 396
>PHA03286 envelope glycoprotein E; Provisional
Probab=38.56 E-value=51 Score=24.42 Aligned_cols=21 Identities=24% Similarity=0.382 Sum_probs=18.9
Q ss_pred eEEEecCCCCCCEEEEEEEEe
Q psy6361 52 SFVINNIAEKDTNVYTCTVSN 72 (148)
Q Consensus 52 ~l~i~~~~~~d~g~y~C~~~~ 72 (148)
.|.+.++...++|.|.|.+..
T Consensus 308 nL~f~nA~~s~SGLYVfVl~y 328 (492)
T PHA03286 308 SFRLANAQPTDAGLYVVVALY 328 (492)
T ss_pred ceeecCCCcccCceEEEEEEE
Confidence 588999999999999999864
No 397
>KOG1026|consensus
Probab=37.98 E-value=66 Score=25.70 Aligned_cols=69 Identities=13% Similarity=0.087 Sum_probs=38.8
Q ss_pred eeEeeeccceeeeeecccCCCCcCCCCccEEEEeeCCEEecCC---ceEEEecCCCCCCEEEEEEEEeCCCCcEEEEEEE
Q psy6361 8 EQAMLLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDLLYVTRN---GSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMN 84 (148)
Q Consensus 8 ~~~~~g~~~~l~C~~~~~~~p~~~~~~~~~v~W~~~~~~~~~~---~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~ 84 (148)
..+..+..+.+.|...+.+.|. ..|+......... ..+.. +.. .-.-.+.|.+.+..+.....+.+.
T Consensus 202 ~~v~~~~~~~~~c~~~~~~vp~--------~~~~~~~~~~~~~~~~~~~c~-~~~-~~~~~~~c~~E~~~~~~~~~v~~~ 271 (774)
T KOG1026|consen 202 LTVEEGSSITLKCSQAGIPVPC--------HYWFPNCLASSNTNQTSSLCR-SEC-EVLENDLCIAENAVARSNPSILLV 271 (774)
T ss_pred hhhcccchheeeeecccCCCcc--------eeeecccccccCCCccccccc-ccc-eeeechhhHHHHhhhhcCceeeeE
Confidence 3456788899999999999994 8898875111111 11111 000 001127888777666544444444
Q ss_pred Ee
Q psy6361 85 VL 86 (148)
Q Consensus 85 v~ 86 (148)
+.
T Consensus 272 ~~ 273 (774)
T KOG1026|consen 272 VD 273 (774)
T ss_pred Ee
Confidence 44
No 398
>PHA03292 envelope glycoprotein I; Provisional
Probab=36.56 E-value=1.2e+02 Score=22.11 Aligned_cols=25 Identities=20% Similarity=0.149 Sum_probs=20.7
Q ss_pred CceEEEecCCCCCCEEEEEEEEeCC
Q psy6361 50 NGSFVINNIAEKDTNVYTCTVSNAA 74 (148)
Q Consensus 50 ~~~l~i~~~~~~d~g~y~C~~~~~~ 74 (148)
..-|.|.+.+.+|+|.|.-++.-..
T Consensus 127 ~vLL~I~~P~~~DSGiY~LRV~Ldg 151 (413)
T PHA03292 127 NVLLNITGPQPADSGAYILRVKLDH 151 (413)
T ss_pred ceEEEeCCCCcccceeEEEEEEeCC
Confidence 3568899999999999999987543
No 399
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=35.43 E-value=1.5e+02 Score=22.13 Aligned_cols=26 Identities=15% Similarity=0.245 Sum_probs=19.0
Q ss_pred ecCCceEEEecCCCCCCEEEEEEEEe
Q psy6361 47 VTRNGSFVINNIAEKDTNVYTCTVSN 72 (148)
Q Consensus 47 ~~~~~~l~i~~~~~~d~g~y~C~~~~ 72 (148)
....-.|.+.++...++|.|.|.+..
T Consensus 265 ~~~~~~l~f~~a~~~~sGLYv~V~~~ 290 (439)
T PF02480_consen 265 ASNGVDLQFTNAPESASGLYVFVVYY 290 (439)
T ss_dssp -TTSSSEEESS--GGG-EEEEEEEEE
T ss_pred cCCCcceEecCCCcccCceEEEEEEE
Confidence 45567899999999999999999864
No 400
>COG4953 PbpC Membrane carboxypeptidase/penicillin-binding protein PbpC [Cell envelope biogenesis, outer membrane]
Probab=35.14 E-value=2.3e+02 Score=22.61 Aligned_cols=52 Identities=13% Similarity=0.056 Sum_probs=30.6
Q ss_pred ceeeeeecccCCCCcCCCCccEEEEeeCCEEecCCceEEEecCCCCCCEEEEEEEEeCCCC
Q psy6361 16 IPMHSRYNYTNLPQSRNPGQVIKRYLKDLLYVTRNGSFVINNIAEKDTNVYTCTVSNAAGS 76 (148)
Q Consensus 16 ~~l~C~~~~~~~p~~~~~~~~~v~W~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 76 (148)
+.|.-...+...| +.|+-+|..........-..-...+.|.|+..+....|.
T Consensus 672 ~~l~l~~~g~~~~---------~~W~lng~~l~~~~~~~~~~w~~~~~G~~~ltVid~~G~ 723 (733)
T COG4953 672 VTLKLIAQGGRGP---------IYWFLNGEPLGEASRNRPVTWKPEDAGYYKLTVIDASGR 723 (733)
T ss_pred eEEEEEcCCCcce---------eEEEeCCcCccccccCCcceeccCCCCeEEEEEEccCCc
Confidence 4555555555554 889999833332211111223467789999988876665
No 401
>PF02440 Adeno_E3_CR1: Adenovirus E3 region protein CR1; InterPro: IPR003471 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D virus) 49 Kd protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=33.15 E-value=76 Score=16.39 Aligned_cols=7 Identities=14% Similarity=-0.078 Sum_probs=4.8
Q ss_pred EEEEeeC
Q psy6361 37 IKRYLKD 43 (148)
Q Consensus 37 ~v~W~~~ 43 (148)
.++||+-
T Consensus 17 ~V~Wy~~ 23 (63)
T PF02440_consen 17 PVTWYKF 23 (63)
T ss_pred ceEEEEe
Confidence 4889843
No 402
>PHA03291 envelope glycoprotein I; Provisional
Probab=31.81 E-value=1.8e+02 Score=21.04 Aligned_cols=38 Identities=11% Similarity=0.125 Sum_probs=25.5
Q ss_pred CCceEEEecCCCCCCEEEEEEEEeCCCCcEEEEEEEEe
Q psy6361 49 RNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVL 86 (148)
Q Consensus 49 ~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~ 86 (148)
..--|.|.+....|+|.|.-++.-.......-+.|.+.
T Consensus 127 ~~vLL~i~~P~~~DsGiYvLRV~vdgat~adlF~lg~~ 164 (401)
T PHA03291 127 RQPLLRARGAARAVVGLYVLRVWVEGATNASLFPLGLA 164 (401)
T ss_pred cceEEEecCCCcccceeEEEEEEeCCCcccceEEEeee
Confidence 34568899999999999999887554433233334433
No 403
>KOG4597|consensus
Probab=29.22 E-value=28 Score=25.92 Aligned_cols=30 Identities=7% Similarity=-0.054 Sum_probs=26.5
Q ss_pred CceEEEecCCcEEEEeeeecccCCeEEEEE
Q psy6361 96 QESVAIVVNHPMNISCSHYGVPTPDFSWYK 125 (148)
Q Consensus 96 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~ 125 (148)
+....+.++++..++|.+.|.+.+.++|.+
T Consensus 203 pa~w~vg~wetcS~tCg~~G~q~r~V~c~q 232 (560)
T KOG4597|consen 203 PAEWFVGDWETCSSTCGVQGRQYRVVTCEQ 232 (560)
T ss_pred cchhhcccchhhcccccccCCcCceeeeeh
Confidence 556778889999999999999999999975
No 404
>PHA03112 IL-18 binding protein; Provisional
Probab=28.91 E-value=1.1e+02 Score=18.80 Aligned_cols=26 Identities=12% Similarity=0.308 Sum_probs=18.9
Q ss_pred ecCCcEEEEeeeecc-cC-CeEEEEECC
Q psy6361 102 VVNHPMNISCSHYGV-PT-PDFSWYKDG 127 (148)
Q Consensus 102 ~~g~~~~l~C~~~g~-p~-~~~~W~~~g 127 (148)
.+++.+.|+|.+-+. |. .-+.|.+++
T Consensus 36 k~~~~vvL~C~gcs~fp~fS~lYWl~gn 63 (141)
T PHA03112 36 KETEKVVLECRGCSYFPKFSYVYWLIGN 63 (141)
T ss_pred CCCCEEEEEEECccCCCCceEEEEEcCC
Confidence 357889999997654 43 468899765
No 405
>PHA03286 envelope glycoprotein E; Provisional
Probab=28.00 E-value=2.6e+02 Score=21.00 Aligned_cols=37 Identities=14% Similarity=0.197 Sum_probs=28.0
Q ss_pred CceEEEecCCCCCCEEEEEEEEeCCCC-cEEEEEEEEe
Q psy6361 50 NGSFVINNIAEKDTNVYTCTVSNAAGS-TSKTIQMNVL 86 (148)
Q Consensus 50 ~~~l~i~~~~~~d~g~y~C~~~~~~~~-~~~~~~l~v~ 86 (148)
...|.|.+++.+++|.|+-...|..+. ....+.+.|.
T Consensus 126 ~~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~ 163 (492)
T PHA03286 126 GKELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVS 163 (492)
T ss_pred CCceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEe
Confidence 467999999999999999998887665 3334455553
No 406
>PF01537 Herpes_glycop_D: Herpesvirus glycoprotein D/GG/GX domain; InterPro: IPR002896 Herpesviruses are dsDNA viruses with no RNA stage. This entry represents a conserved domain found in several Herpes viruses glycoproteins, including: Glycoprotein-D (gD or gIV), which is common to Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2), as well as Equid herpesvirus 1, Bovine herpesvirus 1 and Meleagrid herpesvirus 1 (MeHV-1). Glycoprotein-D has been found on the viral envelope and the plasma membrane of infected cells. gD immunisation can produce an immune response to bovine herpes virus (BHV-1). This response is stronger than that of the other major glycoproteins gB (gI) and gC (gIII) in BHV-1 [, , , ]. Glycoprotein G (gG), which is one of the seven external glycoproteins of Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) []. In the HHV-2 virus-infected cell, gG-2 is cleaved into a secreted amino-terminal portion (sgG-2) and a carboxy-terminal portion. The latter protein is further O-glycosylated, generating the cell membrane-associated mature gG-2 (mgG-2). The mgG-2 protein has widely been used as a prototype antigen for detection of type-specific antibodies against HHV-2 []. Glycoprotein GX (gX), which was initially identified in Suid herpesvirus 1 (Pseudorabies virus). ; GO: 0016021 integral to membrane; PDB: 3U82_A 1L2G_A 2C3A_B 2C36_A 1JMA_A 3SKU_B.
Probab=27.84 E-value=1.4e+02 Score=17.81 Aligned_cols=24 Identities=13% Similarity=0.160 Sum_probs=14.3
Q ss_pred CCceEEEecCCCCCCEEEEEEEEe
Q psy6361 49 RNGSFVINNIAEKDTNVYTCTVSN 72 (148)
Q Consensus 49 ~~~~l~i~~~~~~d~g~y~C~~~~ 72 (148)
+.-.|.+......++|.|.-.+.-
T Consensus 90 d~lgll~~aP~~~~sG~Y~r~i~i 113 (124)
T PF01537_consen 90 DELGLLMAAPARYDSGQYRRVIQI 113 (124)
T ss_dssp TSSEEEEES--GGG-EEEEEEEEE
T ss_pred CccceEEEccCccCCceEEEEEEE
Confidence 345667777778888888776554
No 407
>PF10430 Ig_Tie2_1: Tie-2 Ig-like domain 1; InterPro: IPR018941 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. Angiogenesis is a physiological process whereby new blood vessels are formed from existing ones. It is essential for tissue repair and regeneration during wound healing but also plays important roles in many pathological processes including tumor growth and metastasis [, ]. Angiogenesis is regulated in part by the receptor protein tyrosine kinase Tie2 and its ligands, the angiopoietins. The angiopoietin-binding site is harbord by the N-terminal two immunoglobulin-like (Ig-like) domains of Tie2 []. The angiopoietin-1 receptor contains the Tie-2 Ig-like domain. This protein is a tyrosine-kinase transmembrane receptor for angiopoietin 1. It probably regulates endothelial cell proliferation, differentiation and guides the proper patterning of endothelial cells during blood vessel formation. Tie2 contains not two but three immunoglobulin domains. They fold together with the three epidermal growth factor domains to form a compact, arrowhead-shaped structure [].; GO: 0004714 transmembrane receptor protein tyrosine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation, 0007169 transmembrane receptor protein tyrosine kinase signaling pathway, 0005887 integral to plasma membrane; PDB: 2GY7_B 2GY5_A.
Probab=27.58 E-value=87 Score=17.51 Aligned_cols=10 Identities=20% Similarity=0.458 Sum_probs=7.3
Q ss_pred CCEEEEEEEE
Q psy6361 62 DTNVYTCTVS 71 (148)
Q Consensus 62 d~g~y~C~~~ 71 (148)
.-|.|+|...
T Consensus 74 ~~GayyCegk 83 (96)
T PF10430_consen 74 AIGAYYCEGK 83 (96)
T ss_dssp --EEEEEEEE
T ss_pred ccceEEEEEE
Confidence 3599999987
No 408
>PHA03283 envelope glycoprotein E; Provisional
Probab=24.51 E-value=1.3e+02 Score=22.95 Aligned_cols=24 Identities=8% Similarity=0.217 Sum_probs=20.5
Q ss_pred CCceEEEecCCCCCCEEEEEEEEe
Q psy6361 49 RNGSFVINNIAEKDTNVYTCTVSN 72 (148)
Q Consensus 49 ~~~~l~i~~~~~~d~g~y~C~~~~ 72 (148)
.+-.|.+.++...++|.|.|.+..
T Consensus 313 ~~v~L~f~nap~~~SGLYVfVv~y 336 (542)
T PHA03283 313 NRVDLLFKNAPASASGLYVFVLLY 336 (542)
T ss_pred CCcceEeccCCcccCceEEEEEEE
Confidence 346789999999999999999864
No 409
>PF04668 Tsg: Twisted gastrulation (Tsg) protein conserved region; InterPro: IPR006761 Tsg was identified in Drosophila melanogaster as being required to specify the dorsal-most structures in the embryo, for example the amnioserosa. Biochemical experiments have revealed three key properties of Tsg: it can synergistically inhibit Dpp/BMP action in both D. melanogaster and vertebrates by forming a tripartite complete between itself, SOG/chordin and a BMP ligand; Tsg seems to enhance the Tld/BMP-1-mediated cleavage rate of SOG/chordin and may change the preference of site utilisation; Tsg can promote the dissociation of chordin cysteine-rich-containing fragments from the ligand to inhibit BMP signalling [, ].
Probab=22.40 E-value=63 Score=19.53 Aligned_cols=8 Identities=25% Similarity=0.326 Sum_probs=6.8
Q ss_pred EEEEeeCC
Q psy6361 37 IKRYLKDL 44 (148)
Q Consensus 37 ~v~W~~~~ 44 (148)
+++||++|
T Consensus 101 sYRWFHdg 108 (132)
T PF04668_consen 101 SYRWFHDG 108 (132)
T ss_pred cceeeccc
Confidence 68899987
No 410
>cd09030 DUF1425 Putative periplasmic lipoprotein. This bacterial family of proteins contains members described as putative lipoproteins, some are also known as YcfL. The function of this family is unknown. Family members have also been annotated as predicted periplasmic lipoproteins (COG5633), and appear to contain an N-terminal membrane lipoprotein lipid attachment side (pfam08139), which is not included in this alignment model.
Probab=21.75 E-value=1.1e+02 Score=17.16 Aligned_cols=14 Identities=29% Similarity=0.722 Sum_probs=10.3
Q ss_pred eEEEE-ECCEEeecC
Q psy6361 120 DFSWY-KDGSLLRIQ 133 (148)
Q Consensus 120 ~~~W~-~~g~~l~~~ 133 (148)
.+.|| .+|..+...
T Consensus 53 rf~WyD~~G~~v~~~ 67 (101)
T cd09030 53 RFYWYDAQGLEVEPE 67 (101)
T ss_pred EEEEECCCCCCcCCC
Confidence 57788 677777665
No 411
>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[].
Probab=20.49 E-value=51 Score=14.76 Aligned_cols=9 Identities=33% Similarity=0.741 Sum_probs=6.8
Q ss_pred CCCCEEEEE
Q psy6361 60 EKDTNVYTC 68 (148)
Q Consensus 60 ~~d~g~y~C 68 (148)
..+.|.|+|
T Consensus 20 ~~~dG~~yC 28 (36)
T PF11781_consen 20 YSDDGFYYC 28 (36)
T ss_pred EccCCEEEh
Confidence 456788988
No 412
>PF07233 DUF1425: Protein of unknown function (DUF1425); InterPro: IPR010824 This family consists of several hypothetical bacterial proteins of around 125 residues in length. Several members of this family are described as putative lipoproteins and are often known as YcfL. The function of this family is unknown.; PDB: 3O0L_A.
Probab=20.20 E-value=1.5e+02 Score=16.48 Aligned_cols=14 Identities=36% Similarity=0.790 Sum_probs=7.9
Q ss_pred eEEEE-ECCEEeecC
Q psy6361 120 DFSWY-KDGSLLRIQ 133 (148)
Q Consensus 120 ~~~W~-~~g~~l~~~ 133 (148)
.+.|| ++|..+.+.
T Consensus 45 rf~WyD~~G~~v~~~ 59 (94)
T PF07233_consen 45 RFYWYDKQGLEVDPE 59 (94)
T ss_dssp EEEEE-TTS-EE--T
T ss_pred EEEEECCCCCCcCCC
Confidence 57788 677777654
Done!