RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6361
(148 letters)
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 82.9 bits (205), Expect = 4e-20
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Query: 44 LLYVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKDEQQESVAIVV 103
+ +V + N++ +D+ YTC NAAGS S + + V PP F+ ++ V +
Sbjct: 148 MSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFR-KKPHPVETLK 206
Query: 104 NHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHY 136
+++ C G P SW+KD LR Y
Sbjct: 207 GADVHLECELQGTPPFQVSWHKDKRELRSGKKY 239
Score = 80.2 bits (198), Expect = 4e-19
Identities = 24/91 (26%), Positives = 38/91 (41%)
Query: 46 YVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKDEQQESVAIVVNH 105
V + + + + D YTC SN AG S + Q+ V PP F + + S + +
Sbjct: 56 LVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDE 115
Query: 106 PMNISCSHYGVPTPDFSWYKDGSLLRIQSHY 136
C G P WYKD + ++ S +
Sbjct: 116 HTRYECKIGGSPEIKVLWYKDETEIQESSKF 146
Score = 43.2 bits (102), Expect = 6e-06
Identities = 14/62 (22%), Positives = 22/62 (35%), Gaps = 1/62 (1%)
Query: 86 LVPPFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHYITFFLFFQR 145
+ PPFF + SV + + C G +W KD +R +Y +
Sbjct: 3 MAPPFFD-LKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTA 61
Query: 146 LL 147
L
Sbjct: 62 TL 63
Score = 41.3 bits (97), Expect = 4e-05
Identities = 10/36 (27%), Positives = 14/36 (38%)
Query: 50 NGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNV 85
S I N+ D Y C SN GS + + +
Sbjct: 247 LTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITL 282
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 84.5 bits (209), Expect = 4e-20
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 1/93 (1%)
Query: 44 LLYVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKDEQQESVAIVV 103
+ +V + N++ +D+ YTC NAAGS S + + V PP F+ + V +
Sbjct: 340 MSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHP-VETLK 398
Query: 104 NHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHY 136
+++ C G P SW+KD LR Y
Sbjct: 399 GADVHLECELQGTPPFQVSWHKDKRELRSGKKY 431
Score = 81.0 bits (200), Expect = 7e-19
Identities = 26/102 (25%), Positives = 42/102 (41%)
Query: 46 YVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKDEQQESVAIVVNH 105
V + + + + D YTC SN AG S + Q+ V PP F + + S + +
Sbjct: 248 LVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDE 307
Query: 106 PMNISCSHYGVPTPDFSWYKDGSLLRIQSHYITFFLFFQRLL 147
C G P WYKD + ++ S + F+ +L
Sbjct: 308 HTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVL 349
Score = 77.9 bits (192), Expect = 8e-18
Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 1/91 (1%)
Query: 49 RNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKDEQQESVAIVVNHPMN 108
S I N+ D Y C SN GS + + + PP F ++ ++ VV +
Sbjct: 438 FLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPRFV-KKLSDISTVVGEEVQ 496
Query: 109 ISCSHYGVPTPDFSWYKDGSLLRIQSHYITF 139
+ + G +W+KD + +S I
Sbjct: 497 LQATIEGAEPISVAWFKDKGEIVRESDNIWI 527
Score = 77.2 bits (190), Expect = 1e-17
Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 4/101 (3%)
Query: 44 LLYVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNV---LVPPFFKDEQQESVA 100
+ + S VIN + D YTC N+ G+ + + + + +PP F + + V
Sbjct: 54 MQFKNNVASLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLK-DVH 112
Query: 101 IVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHYITFFL 141
+ P+ C G SWYKDG LL+ ++ T F+
Sbjct: 113 ETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFI 153
Score = 72.5 bits (178), Expect = 7e-16
Identities = 22/105 (20%), Positives = 39/105 (37%), Gaps = 4/105 (3%)
Query: 46 YVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVL---VPPFFKDEQQESVAIV 102
++ + I + Y C+ SN G+ S + ++ + VPPFF + SV +
Sbjct: 152 FIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPPFFD-LKPVSVDLA 210
Query: 103 VNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHYITFFLFFQRLL 147
+ C G +W KD +R +Y + L
Sbjct: 211 LGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATL 255
Score = 45.6 bits (108), Expect = 2e-06
Identities = 8/38 (21%), Positives = 15/38 (39%)
Query: 49 RNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVL 86
+ + + YTC + N AG+ ++VL
Sbjct: 532 NIATLQFSRAEPANAGKYTCQIKNEAGTQECFATLSVL 569
Score = 44.4 bits (105), Expect = 4e-06
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 88 PPFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHY 136
PP+F E E V + P+ + C G P +WYK+ + LR Y
Sbjct: 5 PPYFI-EPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAY 52
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Length = 192
Score = 80.6 bits (199), Expect = 6e-20
Identities = 20/83 (24%), Positives = 30/83 (36%), Gaps = 2/83 (2%)
Query: 50 NGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKDEQQESVAIVVNHPMNI 109
N + NI D Y C +N AG K + V V P + E+ N + +
Sbjct: 57 NTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQPHIIQLKNETT--YENGQVTL 114
Query: 110 SCSHYGVPTPDFSWYKDGSLLRI 132
C G P P+ +W +
Sbjct: 115 VCDAEGEPIPEITWKRAVDGFTF 137
Score = 44.4 bits (105), Expect = 2e-06
Identities = 13/52 (25%), Positives = 21/52 (40%)
Query: 87 VPPFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHYIT 138
+P ++ + M SC G P P SW+++G L+ YI
Sbjct: 2 MPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYIL 53
Score = 41.7 bits (98), Expect = 2e-05
Identities = 8/63 (12%), Positives = 22/63 (34%), Gaps = 2/63 (3%)
Query: 23 NYTNLPQSRNPGQVIKRYLKDLLYVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQ 82
+ + R + + S I ++ D+ Y C ++ G K++
Sbjct: 131 AVDGFTFTEGDKSLDGRIE--VKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMY 188
Query: 83 MNV 85
+++
Sbjct: 189 LDI 191
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 77.8 bits (192), Expect = 7e-19
Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 2/90 (2%)
Query: 49 RNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKDE--QQESVAIVVNHP 106
R + + ++D VYTC +N G + ++ + P F +E V
Sbjct: 61 RTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGST 120
Query: 107 MNISCSHYGVPTPDFSWYKDGSLLRIQSHY 136
+ + + G P P +W+ LL+ +
Sbjct: 121 LRLHVMYIGRPVPAMTWFHGQKLLQNSENI 150
Score = 37.0 bits (86), Expect = 8e-04
Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Query: 88 PPFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHYITFF 140
P + ++ + V + +SC G P PD WY+ G L Y
Sbjct: 7 APGIR-KEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSS 58
Score = 37.0 bits (86), Expect = 0.001
Identities = 7/38 (18%), Positives = 14/38 (36%), Gaps = 1/38 (2%)
Query: 49 RNGSFVINNIAEK-DTNVYTCTVSNAAGSTSKTIQMNV 85
V+ N+ K Y +SN G+ + + +
Sbjct: 157 HYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEI 194
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 80.6 bits (199), Expect = 7e-19
Identities = 23/107 (21%), Positives = 38/107 (35%), Gaps = 4/107 (3%)
Query: 30 SRNPGQVIKRYLKDLLYVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPP 89
R G+ I R + NG I N ++D Y C N+ G Q+ P
Sbjct: 240 RRADGKPIARKARRHKS---NGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQP 296
Query: 90 FFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHY 136
+ + + + + + C G P P + W K+G L +
Sbjct: 297 NWV-QIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRI 342
Score = 71.8 bits (176), Expect = 9e-16
Identities = 19/100 (19%), Positives = 38/100 (38%), Gaps = 3/100 (3%)
Query: 42 KDLLYVTRNGSFVINNIAE-KDTNVYTCTVSNAAGS-TSKTIQMNVLVPPFFKDEQQESV 99
D Y +GS +INN + +D Y C +N+ G+ S+ ++ FK + +V
Sbjct: 53 MDFRYSVVDGSLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTV 112
Query: 100 AIVVNHPMNISCS-HYGVPTPDFSWYKDGSLLRIQSHYIT 138
++ M + C ++W + +
Sbjct: 113 SVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFV 152
Score = 62.5 bits (152), Expect = 1e-12
Identities = 19/104 (18%), Positives = 34/104 (32%), Gaps = 11/104 (10%)
Query: 47 VTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLV----------PPFFKDEQQ 96
G+ I + + D YTC V+N + L+ P + +
Sbjct: 153 SQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFP 212
Query: 97 ESVAIVVNHPMNISCSHYGVPTPDFSWYK-DGSLLRIQSHYITF 139
E+V + + C G P P W + DG + ++
Sbjct: 213 ETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKS 256
Score = 43.3 bits (102), Expect = 8e-06
Identities = 8/41 (19%), Positives = 16/41 (39%)
Query: 46 YVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVL 86
G+ I + D +Y C N G + +++V+
Sbjct: 342 IQIEQGTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSVI 382
Score = 40.6 bits (95), Expect = 7e-05
Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 2/51 (3%)
Query: 88 PPFFKDEQQESVAIVV--NHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHY 136
P F E + + + +SC G P P W +G+ + I +
Sbjct: 5 GPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDF 55
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 80.4 bits (198), Expect = 8e-19
Identities = 21/94 (22%), Positives = 36/94 (38%), Gaps = 1/94 (1%)
Query: 46 YVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKDEQQESVAIVVNH 105
+G+ +I + +D+ Y C V+N+ G S + V P K + +
Sbjct: 265 VKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAK-IDPPTQTVDFGR 323
Query: 106 PMNISCSHYGVPTPDFSWYKDGSLLRIQSHYITF 139
P +C + G P SW KDG + +
Sbjct: 324 PAVFTCQYTGNPIKTVSWMKDGKAIGHSESVLRI 357
Score = 65.0 bits (158), Expect = 2e-13
Identities = 20/114 (17%), Positives = 38/114 (33%), Gaps = 12/114 (10%)
Query: 31 RNPGQVIKRYLKDLLYVTRNGSFVINNIAEKDTN------VYTCTVSNAAGS-TSKTIQM 83
R+ G + + L ++ +G V +D VY C N GS S+ + +
Sbjct: 40 RSDGTAVGD-VPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHV 98
Query: 84 NVLVPPFFKDEQQESVAIVVNHPMNISC---SHYGVPTPDFSWYKDGSLLRIQS 134
+V +++ ++ + I C S SW+ D
Sbjct: 99 RAVVAQYYE-ADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPG 151
Score = 57.3 bits (138), Expect = 1e-10
Identities = 21/119 (17%), Positives = 35/119 (29%), Gaps = 10/119 (8%)
Query: 29 QSRNPGQVIKRYLKDLLYVTRNGSFVINNIAEKDTN-VYTCTVSNAAGS---TSKTIQMN 84
V +G I + +D Y C + S T
Sbjct: 142 TDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRL 201
Query: 85 VLVPPFFKDE------QQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHYI 137
V+ P Q+ + ++V H +++ C G P P F WYK + +
Sbjct: 202 VITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVV 260
Score = 41.5 bits (97), Expect = 3e-05
Identities = 7/39 (17%), Positives = 16/39 (41%)
Query: 47 VTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNV 85
I ++ ++D +Y C V N S + ++ +
Sbjct: 349 GHSESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKL 387
Score = 41.5 bits (97), Expect = 3e-05
Identities = 13/65 (20%), Positives = 19/65 (29%), Gaps = 5/65 (7%)
Query: 87 VPPFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYK-DGSLLRIQSHYITFF----L 141
P F E + + I C G P P+ W + DG+ + L
Sbjct: 2 KGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKL 61
Query: 142 FFQRL 146
F
Sbjct: 62 VFPPF 66
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 77.5 bits (191), Expect = 8e-19
Identities = 26/107 (24%), Positives = 41/107 (38%), Gaps = 3/107 (2%)
Query: 34 GQVIKRYLKDLLYVTRNGSFVINNIAEKDTNVYTCTVSNAAG--STSKTIQMNVLVPPFF 91
+ + + + N + I NI + D +Y C A + I + V VPP
Sbjct: 40 NEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAI 99
Query: 92 KDEQQ-ESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHYI 137
Q+ + M SC G P P SW+++G L+ YI
Sbjct: 100 SMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYI 146
Score = 46.3 bits (110), Expect = 3e-07
Identities = 12/38 (31%), Positives = 15/38 (39%)
Query: 50 NGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLV 87
N + NI D Y C +N AG K + V V
Sbjct: 151 NTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFV 188
Score = 33.6 bits (77), Expect = 0.012
Identities = 8/48 (16%), Positives = 11/48 (22%), Gaps = 1/48 (2%)
Query: 88 PPFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSH 135
F+ E + C P P SW + S
Sbjct: 2 MLTFR-EVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISD 48
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 78.4 bits (193), Expect = 2e-18
Identities = 26/99 (26%), Positives = 36/99 (36%), Gaps = 3/99 (3%)
Query: 47 VTRNGSFVINNIAEKDTNVYTCTVSNAAGST--SKTIQMNVLVPPFFKDEQQ-ESVAIVV 103
V N I I + D Y C A K IQ+ V VPP + Q + +
Sbjct: 151 VLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANL 210
Query: 104 NHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHYITFFLF 142
+ + C G P P SW KDG + + +F
Sbjct: 211 GQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIF 249
Score = 69.1 bits (169), Expect = 5e-15
Identities = 15/88 (17%), Positives = 26/88 (29%), Gaps = 2/88 (2%)
Query: 49 RNGSFVINNIAEKDTNVYTCTVSNAAGST-SKTIQMNVLVPPFFKDEQQESVAIVVNHPM 107
+ + I N D +Y C V+ G+ T+ + + FK
Sbjct: 60 DSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFK-NAPTPQEFKEGEDA 118
Query: 108 NISCSHYGVPTPDFSWYKDGSLLRIQSH 135
I C P W G + ++
Sbjct: 119 VIVCDVVSSLPPTIIWKHKGRDVILKKD 146
Score = 44.9 bits (106), Expect = 2e-06
Identities = 10/41 (24%), Positives = 15/41 (36%)
Query: 47 VTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLV 87
+ I N+ + D Y C N AG +I + V
Sbjct: 250 SDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFA 290
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 79.6 bits (196), Expect = 2e-18
Identities = 27/98 (27%), Positives = 40/98 (40%), Gaps = 6/98 (6%)
Query: 46 YVTRNGSFV----INNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKDEQQESVAI 101
YVT NG V I ++ D +Y C + G + ++NV P+ + Q E AI
Sbjct: 481 YVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIR--QMEKKAI 538
Query: 102 VVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHYITF 139
V + ++C G P W +D L I F
Sbjct: 539 VAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVF 576
Score = 78.1 bits (192), Expect = 8e-18
Identities = 20/99 (20%), Positives = 30/99 (30%), Gaps = 1/99 (1%)
Query: 46 YVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKDEQQESVAIVVNH 105
R I + +TC N AG T +NV VPP + + A
Sbjct: 672 VGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPPRWI-LEPTDKAFAQGS 730
Query: 106 PMNISCSHYGVPTPDFSWYKDGSLLRIQSHYITFFLFFQ 144
+ C G P P +W K + + +
Sbjct: 731 DAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIR 769
Score = 77.7 bits (191), Expect = 1e-17
Identities = 21/102 (20%), Positives = 39/102 (38%), Gaps = 1/102 (0%)
Query: 38 KRYLKDLLYVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKDEQQE 97
+ + + +G+ +I + +D+ Y C V+N+ G S + V P K
Sbjct: 293 QAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAK-IDPP 351
Query: 98 SVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHYITF 139
+ + P +C + G P SW KDG + +
Sbjct: 352 TQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESVLRI 393
Score = 73.4 bits (180), Expect = 3e-16
Identities = 21/92 (22%), Positives = 35/92 (38%), Gaps = 4/92 (4%)
Query: 48 TRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLV---PPFFKDEQQESVAIVVN 104
I ++ ++D +Y C V N S + ++ + PP + QE
Sbjct: 386 HSESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFDPPVIRQAFQEETM-EPG 444
Query: 105 HPMNISCSHYGVPTPDFSWYKDGSLLRIQSHY 136
+ + C G PTP+ SW DG + Y
Sbjct: 445 PSVFLKCVAGGNPTPEISWELDGKKIANNDRY 476
Score = 70.7 bits (173), Expect = 2e-15
Identities = 24/94 (25%), Positives = 36/94 (38%), Gaps = 3/94 (3%)
Query: 46 YVTRNGSFVINNIAEK-DTNVYTCTVSNAAG-STSKTIQMNVLVPPFFKDEQQESVAIVV 103
V NG+ +I N+ D YTC N G S ++++ V+V P E V
Sbjct: 574 KVFPNGTLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQV 633
Query: 104 NHPMNISCSHYGVPTP-DFSWYKDGSLLRIQSHY 136
+ + CS G P + W DG +
Sbjct: 634 GQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGI 667
Score = 69.6 bits (170), Expect = 7e-15
Identities = 20/116 (17%), Positives = 39/116 (33%), Gaps = 12/116 (10%)
Query: 31 RNPGQVIKRYLKDLLYVTRNGSFVINNIAEKDTN------VYTCTVSNAAGS-TSKTIQM 83
R+ G + + L ++ +G V +D VY C N GS S+ + +
Sbjct: 75 RSDGTAVGD-VPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHV 133
Query: 84 NVLVPPFFKDEQQESVAIVVNHPMNISC---SHYGVPTPDFSWYKDGSLLRIQSHY 136
+V +++ + ++ + I C S SW+ D
Sbjct: 134 RAVVAQYYEADVN-KEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAE 188
Score = 65.0 bits (158), Expect = 3e-13
Identities = 18/99 (18%), Positives = 28/99 (28%), Gaps = 7/99 (7%)
Query: 55 INNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLV--PPFFKDEQQESVAIVVNHPMNISCS 112
+ N K ++ A GS + P F E + + I C
Sbjct: 3 MPNERLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIECK 62
Query: 113 HYGVPTPDFSWYK-DGSLLRIQSHYITFF----LFFQRL 146
G P P+ W + DG+ + L F
Sbjct: 63 ASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPF 101
Score = 62.6 bits (152), Expect = 2e-12
Identities = 16/102 (15%), Positives = 29/102 (28%), Gaps = 11/102 (10%)
Query: 47 VTRNGSFVINNIAEKDTN-VYTCTVSNAAGSTSKTIQMNVLV----------PPFFKDEQ 95
V +G I + +D Y C + ++ + P +
Sbjct: 195 VLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAK 254
Query: 96 QESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHYI 137
+ + M + C G P P F WYK + +
Sbjct: 255 FDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVV 296
Score = 48.8 bits (116), Expect = 1e-07
Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 46 YVTRNGSFVINNIAEKDTNVYTCTVSNAAGS-TSKTIQMNVLVPPFF 91
G+ ++NI + + Y C N GS S I ++V
Sbjct: 768 IRVEEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMISVQAHHHH 814
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 79.1 bits (195), Expect = 2e-18
Identities = 20/115 (17%), Positives = 41/115 (35%), Gaps = 3/115 (2%)
Query: 21 RYNYTNLPQSRNPGQVIKRYLKDLLYVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKT 80
+ + + R + + S I ++ D+ Y C ++ G K+
Sbjct: 35 KRAVDGFTFTEGDKSLDGRIE--VKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKS 92
Query: 81 IQMNVLVPPFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSH 135
+ +++ P F Q +P+NISC P W +D +L ++
Sbjct: 93 MYLDIEYAPKF-ISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNT 146
Score = 44.4 bits (105), Expect = 3e-06
Identities = 9/41 (21%), Positives = 16/41 (39%)
Query: 49 RNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPP 89
R I ++ D Y CT +N G+ + + + P
Sbjct: 156 RKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVP 196
Score = 32.9 bits (75), Expect = 0.026
Identities = 6/39 (15%), Positives = 13/39 (33%)
Query: 97 ESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSH 135
++ N + + C G P P+ +W +
Sbjct: 8 KNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEG 46
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 78.4 bits (193), Expect = 5e-18
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 46 YVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKDEQQESVAIVVNH 105
+ N + I N++E+D+ Y C SN GS TI + V P++ DE + ++ +
Sbjct: 270 FENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWLDEPK-NLILAPGE 328
Query: 106 PMNISCSHYGVPTPDFSWYKDGSLLR 131
+ C G P P W +G L+
Sbjct: 329 DGRLVCRANGNPKPTVQWMVNGEPLQ 354
Score = 71.8 bits (176), Expect = 9e-16
Identities = 22/101 (21%), Positives = 39/101 (38%), Gaps = 6/101 (5%)
Query: 46 YVTRNGSFVIN----NIAEKDTNVYTCTVSNAAGS-TSKTIQMNVLVPPFFKDEQQESVA 100
R+G+ VI+ E+ Y C N G+ S I++ V P + E + V
Sbjct: 68 MRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVV 127
Query: 101 IVVNHPMNISCS-HYGVPTPDFSWYKDGSLLRIQSHYITFF 140
+ P+ + C+ G+P+P W Q ++
Sbjct: 128 VQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQG 168
Score = 60.7 bits (147), Expect = 8e-12
Identities = 26/107 (24%), Positives = 37/107 (34%), Gaps = 13/107 (12%)
Query: 47 VTRNGSFVINNIAEKDTN-VYTCTVSNAAGST---SKTIQMNVLV-------PPFFKDEQ 95
NG +N+ +D Y+C T + VL P F Q
Sbjct: 167 QGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQ 226
Query: 96 QESVAIVV--NHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHYITFF 140
+ + +V + + C GVPTPD +WYK G L F
Sbjct: 227 GTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENF 273
Score = 50.6 bits (121), Expect = 2e-08
Identities = 12/61 (19%), Positives = 20/61 (32%)
Query: 76 STSKTIQMNVLVPPFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSH 135
+IQ + PP + + + + I C G P P F W ++ I
Sbjct: 4 PMDPSIQNELTQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKD 63
Query: 136 Y 136
Sbjct: 64 P 64
Score = 47.2 bits (112), Expect = 3e-07
Identities = 9/54 (16%), Positives = 18/54 (33%)
Query: 33 PGQVIKRYLKDLLYVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVL 86
G+ ++ + + + + VY C SN G ++VL
Sbjct: 349 NGEPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSVL 402
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 78.0 bits (192), Expect = 6e-18
Identities = 21/90 (23%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 47 VTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKDEQQESVAIVVNHP 106
+ + +I+N+ + D+ YTC V+ + S + ++ VLVPP+F ++ +
Sbjct: 271 LLGGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVPPWFL-NHPSNLYAYESMD 329
Query: 107 MNISCSHYGVPTPDFSWYKDGSLLRIQSHY 136
+ C+ G P P +W K+G ++ ++
Sbjct: 330 IEFECAVSGKPVPTVNWMKNGDVVIPSDYF 359
Score = 72.2 bits (177), Expect = 8e-16
Identities = 20/98 (20%), Positives = 42/98 (42%), Gaps = 6/98 (6%)
Query: 47 VTRNGSFVINNIAEKDTNVYTCTVSNAAGS-TSKTIQMNVLVPPFFKDEQQ-----ESVA 100
V +G+ I+ + D+ VY C+ N A + T ++ +L P + +V
Sbjct: 173 VLPSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVI 232
Query: 101 IVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHYIT 138
+ + C G P P F+W + +++++S +
Sbjct: 233 AIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYS 270
Score = 66.4 bits (162), Expect = 8e-14
Identities = 27/104 (25%), Positives = 42/104 (40%), Gaps = 8/104 (7%)
Query: 34 GQVIKRYLKDLLYVTRNGSFVINNIA-----EKDTNVYTCTVSNAAGST--SKTIQMNVL 86
G ++ + D NGS +I NI + D +Y C S + S+T ++ V
Sbjct: 60 GLILALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVA 119
Query: 87 VPPFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLL 130
P F Q ES+ + + + C G P P W K+ L
Sbjct: 120 GPLRFL-SQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDL 162
Score = 51.4 bits (123), Expect = 1e-08
Identities = 11/72 (15%), Positives = 20/72 (27%), Gaps = 2/72 (2%)
Query: 71 SNAAGSTSKTIQMNVLVPPFFKDEQQESVAIVVNHPMNISCSHYGV-PTPDFSWYKDGSL 129
+ S+ F + + + ++CS P W KDG +
Sbjct: 4 GSELESSHHHHHHGGRRSLHFV-SEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLI 62
Query: 130 LRIQSHYITFFL 141
L + L
Sbjct: 63 LALGMDDRKQQL 74
Score = 48.7 bits (116), Expect = 1e-07
Identities = 10/42 (23%), Positives = 17/42 (40%)
Query: 47 VTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVP 88
+ + I + + D Y C N AG+ + Q+ V P
Sbjct: 361 IVGGSNLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVPKP 402
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 77.7 bits (191), Expect = 9e-18
Identities = 22/98 (22%), Positives = 39/98 (39%), Gaps = 2/98 (2%)
Query: 43 DLLYVTRNGSFVINNIAEKDTNVYTCTVSNAAGS-TSKTIQMNVLVPPFFKDEQQESVAI 101
L N + + N+ DT Y C N + S ++ +NVL P + +
Sbjct: 156 RLQLSNGNRTLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSY 215
Query: 102 VVNHPMNISCSHYGVPTPDFSWYKDGSLLRI-QSHYIT 138
+N+SC P +SW+ +G+ + Q +I
Sbjct: 216 RSGENLNLSCHAASNPPAQYSWFVNGTFQQSTQELFIP 253
Score = 72.7 bits (178), Expect = 5e-16
Identities = 18/85 (21%), Positives = 34/85 (40%), Gaps = 1/85 (1%)
Query: 47 VTRNGSFVINNIAEKDTNVYTCTVSNAAGS-TSKTIQMNVLVPPFFKDEQQESVAIVVNH 105
N + + N+ D Y C + N+ + S + ++VL P + +
Sbjct: 516 SNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDSSYLSGA 575
Query: 106 PMNISCSHYGVPTPDFSWYKDGSLL 130
+N+SC P+P +SW +G
Sbjct: 576 NLNLSCHSASNPSPQYSWRINGIPQ 600
Score = 71.9 bits (176), Expect = 1e-15
Identities = 17/86 (19%), Positives = 30/86 (34%), Gaps = 1/86 (1%)
Query: 46 YVTRNGSFVINNIAEKDTNVYTCTVSNAAGST-SKTIQMNVLVPPFFKDEQQESVAIVVN 104
N + + ++ D Y C + N S + +NVL P
Sbjct: 337 LSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPG 396
Query: 105 HPMNISCSHYGVPTPDFSWYKDGSLL 130
+++SC P +SW DG++
Sbjct: 397 VNLSLSCHAASNPPAQYSWLIDGNIQ 422
Score = 68.8 bits (168), Expect = 1e-14
Identities = 22/103 (21%), Positives = 37/103 (35%), Gaps = 4/103 (3%)
Query: 41 LKDLLYVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLV---PPFFKDEQQE 97
L D I+NI EK++ +YTC +N+A S+T + V P
Sbjct: 416 LIDGNIQQHTQELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNN 475
Query: 98 SVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHYITFF 140
S + + +C T + W+ +G L +
Sbjct: 476 SKPVEDKDAVAFTCEPEAQNTT-YLWWVNGQSLPVSPRLQLSN 517
Score = 60.0 bits (145), Expect = 2e-11
Identities = 18/92 (19%), Positives = 30/92 (32%), Gaps = 3/92 (3%)
Query: 47 VTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSK-TIQMNVLV-PPFFKDEQQESVAIVVN 104
+ N S +I NI + DT YT V + + T Q V P S +
Sbjct: 67 IYPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKPVEDK 126
Query: 105 HPMNISCSHYGVPTPDFSWYKDGSLLRIQSHY 136
+ +C + W+ + L +
Sbjct: 127 DAVAFTCEPETQD-ATYLWWVNNQSLPVSPRL 157
Score = 56.1 bits (135), Expect = 3e-10
Identities = 16/93 (17%), Positives = 30/93 (32%), Gaps = 4/93 (4%)
Query: 47 VTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLV---PPFFKDEQQESVAIVV 103
I NI ++ YTC N+ ++T + V PP S +
Sbjct: 244 QQSTQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVED 303
Query: 104 NHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHY 136
+ ++C T + W+ + L +
Sbjct: 304 EDAVALTCEPEIQNTT-YLWWVNNQSLPVSPRL 335
Score = 50.7 bits (121), Expect = 2e-08
Identities = 10/48 (20%), Positives = 17/48 (35%)
Query: 41 LKDLLYVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVP 88
+ + I I + Y C VSN A + +I ++ V
Sbjct: 594 RINGIPQQHTQVLFIAKITPNNNGTYACFVSNLATGRNNSIVKSITVS 641
Score = 27.2 bits (60), Expect = 2.4
Identities = 4/21 (19%), Positives = 7/21 (33%)
Query: 110 SCSHYGVPTPDFSWYKDGSLL 130
+ +SWYK +
Sbjct: 20 LVHNLPQHLFGYSWYKGERVD 40
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 76.8 bits (189), Expect = 2e-17
Identities = 18/91 (19%), Positives = 33/91 (36%), Gaps = 1/91 (1%)
Query: 46 YVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKDEQQESVAIVVNH 105
+++ I N+ +D Y C N G + ++ + P + + +
Sbjct: 252 WLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWL-DVITDTEADIGS 310
Query: 106 PMNISCSHYGVPTPDFSWYKDGSLLRIQSHY 136
+ SC G P P W +DG L Q+
Sbjct: 311 DLRWSCVASGKPRPAVRWLRDGQPLASQNRI 341
Score = 68.3 bits (167), Expect = 1e-14
Identities = 23/97 (23%), Positives = 36/97 (37%), Gaps = 3/97 (3%)
Query: 42 KDLLYVTRNGSFVINNIA-EKDTNVYTCTVSNAAGS-TSKTIQMNVLVPPFFKDEQQESV 99
D Y G VI+N KD Y C +NA G+ S+ + F E+++ V
Sbjct: 52 PDSRYRLVAGDLVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPV 111
Query: 100 AIVVNHPMNISCS-HYGVPTPDFSWYKDGSLLRIQSH 135
I + +CS P + W + I +
Sbjct: 112 KITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPAD 148
Score = 60.6 bits (147), Expect = 7e-12
Identities = 14/100 (14%), Positives = 27/100 (27%), Gaps = 11/100 (11%)
Query: 47 VTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQM-----------NVLVPPFFKDEQ 95
G+ I D Y+C ++ +K++ P K +
Sbjct: 154 SQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKF 213
Query: 96 QESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSH 135
+ + + C +G P P W K +
Sbjct: 214 PADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWL 253
Score = 42.2 bits (99), Expect = 2e-05
Identities = 7/41 (17%), Positives = 16/41 (39%)
Query: 46 YVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVL 86
G + + +D+ +Y C N G+ + ++ V
Sbjct: 341 IEVSGGELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQ 381
Score = 41.0 bits (96), Expect = 5e-05
Identities = 7/51 (13%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Query: 88 PPFFKDEQQESVAIVV--NHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHY 136
P F+++ ++ + ++C P + W +G+ L++
Sbjct: 4 GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDS 54
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 73.6 bits (181), Expect = 3e-17
Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 4/91 (4%)
Query: 50 NGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFK----DEQQESVAIVVNH 105
+I ++ + D VY +N GS S T + V VP E +V +
Sbjct: 61 YHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGE 120
Query: 106 PMNISCSHYGVPTPDFSWYKDGSLLRIQSHY 136
++I G P P +W K L+ HY
Sbjct: 121 VVSIKIPFSGKPDPVITWQKGQDLIDNNGHY 151
Score = 38.9 bits (91), Expect = 2e-04
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 4/43 (9%)
Query: 47 VTRNGSF----VINNIAEKDTNVYTCTVSNAAGSTSKTIQMNV 85
V SF N + KD Y N G KT++++V
Sbjct: 153 VIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDV 195
Score = 38.2 bits (89), Expect = 3e-04
Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 1/56 (1%)
Query: 87 VPPFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHYITFFLF 142
+ P FK E+ ++ + + C G P P WY+ G + F
Sbjct: 3 MAPHFK-EELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEF 57
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 73.2 bits (180), Expect = 4e-17
Identities = 24/104 (23%), Positives = 38/104 (36%), Gaps = 2/104 (1%)
Query: 34 GQVIKRYLKDLLYVTRNGSFVINNIAEKDTNVYTCTVSNAAG-STSKTIQMNVLVPPFFK 92
+IK + I ++ + D +Y CT +N G + + V + P
Sbjct: 45 KILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKIT 104
Query: 93 DEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHY 136
+V I+ + C+ G P P SW K S LR S
Sbjct: 105 -RPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRI 147
Score = 42.8 bits (101), Expect = 6e-06
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 47 VTRNGSFVINNIAEKDTNVYTCTVSNAAGS-TSKTIQMNVLVP 88
V +GS I+N+ ++D Y C N+ G+ SK +++ V V
Sbjct: 149 VLESGSLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVEVF 191
Score = 40.1 bits (94), Expect = 7e-05
Identities = 10/55 (18%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Query: 85 VLVPPFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHYITF 139
+ P E+V +V C+ P P+ SW ++ L+++ +
Sbjct: 4 LPKAPVIT-TPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSI 57
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 74.9 bits (184), Expect = 4e-17
Identities = 24/109 (22%), Positives = 41/109 (37%), Gaps = 4/109 (3%)
Query: 34 GQVIKRYLKDLLYVTRNGSFVINNIAEKDTNVYTCTVSNAAG--STSKTIQMNVLVPPFF 91
+ + + + N + I NI + D +Y C A + I + V VPP
Sbjct: 136 NEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAI 195
Query: 92 KDEQQ-ESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHYITF 139
Q+ + M SC G P P SW+++G L+ ++
Sbjct: 196 SMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIE-ENEKYIL 243
Score = 67.9 bits (166), Expect = 1e-14
Identities = 17/87 (19%), Positives = 27/87 (31%), Gaps = 2/87 (2%)
Query: 50 NGSFVINNIAEKDTNVYTCTVSNAAGST-SKTIQMNVLVPPFFKDEQQESVAIVVNHPMN 108
I N +D +Y C ++A G T T+ + + F+ E
Sbjct: 59 RSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFR-EVVSPQEFKQGEDAE 117
Query: 109 ISCSHYGVPTPDFSWYKDGSLLRIQSH 135
+ C P P SW + S
Sbjct: 118 VVCRVSSSPAPAVSWLYHNEEVTTISD 144
Score = 52.5 bits (126), Expect = 5e-09
Identities = 12/42 (28%), Positives = 15/42 (35%)
Query: 50 NGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFF 91
N + NI D Y C +N AG K + V V
Sbjct: 247 NTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQHHH 288
Score = 35.2 bits (81), Expect = 0.005
Identities = 6/54 (11%), Positives = 13/54 (24%), Gaps = 1/54 (1%)
Query: 86 LVPPFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHYITF 139
+ V + V +C+ G P + G + +
Sbjct: 2 MALLQVT-ISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQ 54
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 72.9 bits (179), Expect = 5e-17
Identities = 15/89 (16%), Positives = 27/89 (30%), Gaps = 2/89 (2%)
Query: 49 RNGSFVINNIAEKDTNVYTCTVSNAAGS-TSKTIQMNVLVPPFFKDEQQESVAIVVNHPM 107
+ + I N D +Y C V+ G+ + T+ + + FK
Sbjct: 60 DSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFK-NAPTPQEFKEGEDA 118
Query: 108 NISCSHYGVPTPDFSWYKDGSLLRIQSHY 136
I C P W G + ++
Sbjct: 119 VIVCDVVSSLPPTIIWKHKGRDVILKKDV 147
Score = 44.0 bits (104), Expect = 2e-06
Identities = 10/41 (24%), Positives = 13/41 (31%)
Query: 47 VTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLV 87
V N I I + D Y C A + V+V
Sbjct: 151 VLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIV 191
Score = 26.3 bits (58), Expect = 3.5
Identities = 10/53 (18%), Positives = 13/53 (24%), Gaps = 3/53 (5%)
Query: 88 PPFFKDEQQESVAIVVNHPMNISCSHYGVP-TPDFSWYK-DGSLLRIQSHYIT 138
I V C G D SW+ +G L I+
Sbjct: 2 VLQVD-IVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRIS 53
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 75.1 bits (184), Expect = 6e-17
Identities = 14/93 (15%), Positives = 27/93 (29%), Gaps = 4/93 (4%)
Query: 46 YVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFK-DEQQESVAIVVN 104
+ R ++++A DT YTC+ S + + ++ F E I
Sbjct: 285 TMIRILFAFVSSVARNDTGYYTCSSSKHPSQS---ALVTIVEKGFINATNSSEDYEIDQY 341
Query: 105 HPMNISCSHYGVPTPDFSWYKDGSLLRIQSHYI 137
S P +W + +
Sbjct: 342 EEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGL 374
Score = 70.9 bits (173), Expect = 2e-15
Identities = 13/100 (13%), Positives = 29/100 (29%), Gaps = 2/100 (2%)
Query: 49 RNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKDEQQESVAIVVNHPMN 108
S VI + E Y + + A + + +++ + + + +
Sbjct: 101 GVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYFR--KMENQDA 158
Query: 109 ISCSHYGVPTPDFSWYKDGSLLRIQSHYITFFLFFQRLLL 148
+ C VP P W S + + +L
Sbjct: 159 LVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVL 198
Score = 62.0 bits (150), Expect = 2e-12
Identities = 14/91 (15%), Positives = 27/91 (29%), Gaps = 6/91 (6%)
Query: 47 VTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKDEQQESVAIVVNHP 106
V + V++ + D C N G + L Q + V P
Sbjct: 190 VVKKEEKVLHELFGTD---IRCCARNELGRECTRLFTIDLNQTPQTTLPQLFLK--VGEP 244
Query: 107 MNISCS-HYGVPTPDFSWYKDGSLLRIQSHY 136
+ I C + +W + L +++
Sbjct: 245 LWIRCKAVHVNHGFGLTWELENKALEEGNYF 275
Score = 57.0 bits (137), Expect = 1e-10
Identities = 9/82 (10%), Positives = 22/82 (26%), Gaps = 5/82 (6%)
Query: 55 INNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKDEQQESVAIVVNHPMNISCSHY 114
N+ + ++ Y + + + +V + V+ + +
Sbjct: 19 NNDSSVGKSSSYPMVSESPEDLG---CALRPQSSGTVYEAA--AVEVDVSASITLQVLVD 73
Query: 115 GVPTPDFSWYKDGSLLRIQSHY 136
W S L Q H+
Sbjct: 74 APGNISCLWVFKHSSLNCQPHF 95
Score = 45.8 bits (108), Expect = 1e-06
Identities = 5/44 (11%), Positives = 10/44 (22%)
Query: 46 YVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPP 89
+ S + Y N +K +N+
Sbjct: 373 GLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSGT 416
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 72.6 bits (178), Expect = 7e-17
Identities = 24/106 (22%), Positives = 39/106 (36%), Gaps = 3/106 (2%)
Query: 27 LPQSRNPGQVIKRYLKDLLYVTRNGSFVINNIAEKDTNVYTCTVSNAAGS-TSKTIQMNV 85
L + + + + I ++ DT Y C V + S+ + +
Sbjct: 44 LELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGL 103
Query: 86 LVPPFFKDEQQESVAIVVNHPMNISCSHYGVPTP-DFSWYKDGSLL 130
P+F E+ E + N P N+SC G P P D W +D L
Sbjct: 104 EGLPYFL-EEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPL 148
Score = 37.2 bits (86), Expect = 8e-04
Identities = 8/41 (19%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Query: 49 RNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPP 89
S + + T+ ++C NA G T+ ++P
Sbjct: 156 PQRSLHVPGL--NKTSSFSCEAHNAKGVTTSRTATITVLPQ 194
Score = 34.5 bits (79), Expect = 0.007
Identities = 8/54 (14%), Positives = 15/54 (27%), Gaps = 2/54 (3%)
Query: 88 PPFFKDEQQESVAIVVNHPMNISCSHY-GVPTPDFSWYKDGSLLRIQSHYITFF 140
F ++ + C P+ W +DG +L + T
Sbjct: 2 ESPFV-GNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQV 54
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 74.6 bits (183), Expect = 8e-17
Identities = 22/102 (21%), Positives = 42/102 (41%), Gaps = 6/102 (5%)
Query: 30 SRNPGQVIKRYLKDLLYVTRNGSFVINNIAEKDTNVYTCTVSNAAGS-TSKTIQMNVLVP 88
+ NP I R+ T + +D VYTC V N G ++++ V+
Sbjct: 254 NGNPEDRITRHN-----RTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSA 308
Query: 89 PFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLL 130
P ++ + ++ + + + I C G+P P+ W + L
Sbjct: 309 PKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPL 350
Score = 71.1 bits (174), Expect = 2e-15
Identities = 19/107 (17%), Positives = 28/107 (26%), Gaps = 3/107 (2%)
Query: 34 GQVIKRYLKDLLYVTRNGSFVINNIAEKDTNVYTCTVSNAAGS-TSKTIQMNVLVPPFFK 92
G+ + GS V D Y C AG +S+ I
Sbjct: 45 GKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASP 104
Query: 93 DEQQESVAIVVNHPMNISCSH-YGVPTPDFSWYKDGSLLRIQSHYIT 138
+ E + P + C P P +W K S +
Sbjct: 105 AKTHEKTP-IEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTD 150
Score = 60.3 bits (146), Expect = 1e-11
Identities = 16/124 (12%), Positives = 38/124 (30%), Gaps = 20/124 (16%)
Query: 21 RYNYTNLPQSRNPGQVIKRYLKDLLYVTRNGSFVINNIAEKDTN---VYTCTVSNAAGST 77
+ + + + +R +G+ + ++D + Y CT NAA
Sbjct: 136 KKRLSGADPNADVTDFDRRIT-----AGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDE 190
Query: 78 SKTI-----------QMNVLVPPFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKD 126
+ P + ++ +A I C + P +++K+
Sbjct: 191 EVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMA-KAGDVTMIYCMYGSNPMGYPNYFKN 249
Query: 127 GSLL 130
G +
Sbjct: 250 GKDV 253
Score = 44.5 bits (105), Expect = 3e-06
Identities = 16/58 (27%), Positives = 20/58 (34%), Gaps = 2/58 (3%)
Query: 85 VLVPPFFKDEQQESVAIVVNHPMNISCSHYGVPTP-DFSWYKDGSLLRIQSHYITFFL 141
V P K +Q V N+P + C G +SW KDG Q H
Sbjct: 3 VDKYPVLK-DQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRK 59
Score = 41.8 bits (98), Expect = 2e-05
Identities = 8/40 (20%), Positives = 12/40 (30%)
Query: 46 YVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNV 85
+ VI + D Y C +N G + V
Sbjct: 355 ATVTDSGLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV 394
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 72.7 bits (178), Expect = 9e-17
Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 4/102 (3%)
Query: 50 NGSFVINNIAEKDTNVYTCTVSNAAGST--SKTIQMNVLVPPFFKDEQQESVAIVVNHPM 107
+ +++ KD YTC VS G +I + VLVPP ++ + +
Sbjct: 64 SSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKP-TISVPSSVTIGNRA 122
Query: 108 NISCS-HYGVPTPDFSWYKDGSLLRIQSHYITFFLFFQRLLL 148
++CS H G P ++SW+KDG + T +
Sbjct: 123 VLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTI 164
Score = 47.7 bits (113), Expect = 1e-07
Identities = 6/41 (14%), Positives = 17/41 (41%)
Query: 49 RNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPP 89
++G + + + D+ Y C N G+ ++ ++
Sbjct: 167 KSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVE 207
Score = 29.9 bits (67), Expect = 0.22
Identities = 7/40 (17%), Positives = 15/40 (37%), Gaps = 2/40 (5%)
Query: 88 PPFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDG 127
+ Q V + N + ++C++ G +P W
Sbjct: 2 GSVY--TAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQ 39
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 72.7 bits (178), Expect = 9e-17
Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 4/101 (3%)
Query: 50 NGSFVINNIAEKDTNVYTCTVSNAAGST--SKTIQMNVLVPPFFKDEQQESVAIVVNHPM 107
++ +DT YTC VS G++ +++ VLVPP S A + +
Sbjct: 67 PTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSA-TIGNRA 125
Query: 108 NISCS-HYGVPTPDFSWYKDGSLLRIQSHYITFFLFFQRLL 147
++CS G P +++W+KDG ++ F +L
Sbjct: 126 VLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVL 166
Score = 43.0 bits (101), Expect = 6e-06
Identities = 10/60 (16%), Positives = 20/60 (33%)
Query: 26 NLPQSRNPGQVIKRYLKDLLYVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNV 85
+ NP + G V + ++ DT Y+C N G+ + + +
Sbjct: 146 GIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRM 205
Score = 33.0 bits (75), Expect = 0.019
Identities = 11/50 (22%), Positives = 19/50 (38%)
Query: 87 VPPFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHY 136
+ + V I N+P+ +SC++ G +P W D Y
Sbjct: 2 MGSVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCY 51
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 74.8 bits (183), Expect = 1e-16
Identities = 21/87 (24%), Positives = 34/87 (39%), Gaps = 2/87 (2%)
Query: 46 YVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPF--FKDEQQESVAIVV 103
+ I+ + D +YTC S+ + + + V PF F + V V
Sbjct: 285 MKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATV 344
Query: 104 NHPMNISCSHYGVPTPDFSWYKDGSLL 130
+ I + G P P+ WYK+G L
Sbjct: 345 GERVRIPAKYLGYPPPEIKWYKNGIPL 371
Score = 70.9 bits (173), Expect = 2e-15
Identities = 22/130 (16%), Positives = 39/130 (30%), Gaps = 6/130 (4%)
Query: 14 DLIPMHSRYNYTNLPQSRNPGQVIKRYLKDLLYVTRNGSF-VINNIAEKDTNVYTCTVSN 72
P+ P +N + K T + + N + +D Y C +
Sbjct: 587 GPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQD 646
Query: 73 AAGSTSKTIQMNVLV----PPFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGS 128
+ + V P E+ + + +SC+ G P P W+KD
Sbjct: 647 RKTKKRHCVVRQLTVLERVAPTIT-GNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNE 705
Query: 129 LLRIQSHYIT 138
L S +
Sbjct: 706 TLVEDSGIVL 715
Score = 69.8 bits (170), Expect = 6e-15
Identities = 13/83 (15%), Positives = 25/83 (30%), Gaps = 2/83 (2%)
Query: 54 VINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKDEQQESVAIVVNHPMNISCSH 113
+ A + +Y C N G + I +V P + +++ C+
Sbjct: 516 TLVIQAANVSALYKCEAVNKVGRGERVISFHVTRGPEITLQPDMQP--TEQESVSLWCTA 573
Query: 114 YGVPTPDFSWYKDGSLLRIQSHY 136
+ +WYK G
Sbjct: 574 DRSTFENLTWYKLGPQPLPIHVG 596
Score = 63.6 bits (154), Expect = 8e-13
Identities = 18/98 (18%), Positives = 33/98 (33%), Gaps = 5/98 (5%)
Query: 46 YVTRNGSFVINNIAEKDTNVYTCTVSNAAG--STSKTIQMNVLVPPFFKDE--QQESVAI 101
+ I ++E+DT YT ++N S + + V VPP ++ +
Sbjct: 376 TIKAGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSY 435
Query: 102 VVNHPMNISCSHYGVPTPD-FSWYKDGSLLRIQSHYIT 138
++C+ Y +P P WY
Sbjct: 436 QYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQA 473
Score = 59.0 bits (142), Expect = 3e-11
Identities = 10/92 (10%), Positives = 25/92 (27%), Gaps = 3/92 (3%)
Query: 50 NGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKD---EQQESVAIVVNHP 106
F I + + C S + + V+V D + + V
Sbjct: 182 KKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEK 241
Query: 107 MNISCSHYGVPTPDFSWYKDGSLLRIQSHYIT 138
+ ++C+ + + + Q +
Sbjct: 242 LVLNCTARTELNVGIDFNWEYPSSKHQHKKLV 273
Score = 52.8 bits (126), Expect = 4e-09
Identities = 11/97 (11%), Positives = 25/97 (25%), Gaps = 6/97 (6%)
Query: 48 TRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKDEQQESVAIVV---- 103
+ I + DT Y C ++ + + PF + + +
Sbjct: 83 LFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQDYRSPFIASVSDQHGVVYITENK 142
Query: 104 NHPMNISCSHYGVPTPD--FSWYKDGSLLRIQSHYIT 138
N + I C + Y + + +
Sbjct: 143 NKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISW 179
Score = 49.8 bits (118), Expect = 5e-08
Identities = 13/75 (17%), Positives = 25/75 (33%), Gaps = 6/75 (8%)
Query: 65 VYTCTVSNAAGSTSKTIQMNVLVPPFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWY 124
++ C + AA ++ L P ++ I N + I+C G D+ W
Sbjct: 11 LWLCVETRAASVGLPSVS---LDLPRLSIQKDILT-IKANTTLQITCR--GQRDLDWLWP 64
Query: 125 KDGSLLRIQSHYITF 139
+ S +
Sbjct: 65 NNQSGSEQRVEVTEC 79
Score = 49.0 bits (116), Expect = 9e-08
Identities = 7/44 (15%), Positives = 14/44 (31%)
Query: 46 YVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPP 89
N + I + ++D +YTC + G +
Sbjct: 715 LKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQ 758
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular
adhesion, ligand-independent DIME mutational analysis,
transferase; HET: EPE; 1.96A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.4
Length = 182
Score = 71.4 bits (175), Expect = 1e-16
Identities = 19/87 (21%), Positives = 37/87 (42%), Gaps = 3/87 (3%)
Query: 50 NGSFVINNIAEKDTNVYTCTVSNAAGS-TSKTIQMNVLVPPFFKDEQQESVAIVVNHPMN 108
G + ++ D Y C V + + S+ + + V PFF + + +A+ N P
Sbjct: 59 IGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFT-VEPKDLAVPPNAPFQ 117
Query: 109 ISCSHYGVPTPD-FSWYKDGSLLRIQS 134
+SC G P P W++ + + +
Sbjct: 118 LSCEAVGPPEPVTIVWWRGTTKIGGPA 144
Score = 39.0 bits (91), Expect = 1e-04
Identities = 10/44 (22%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 88 PPFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLR 131
+ + P+ ++CS G+ PD W KDG++++
Sbjct: 2 GLKLM-GAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQ 44
Score = 35.9 bits (83), Expect = 0.002
Identities = 7/37 (18%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 50 NGSFVINNIAEKDTNVYTCTVSNAAGS-TSKTIQMNV 85
V+N + +++C N G +S+T +++
Sbjct: 145 PSPSVLNVTGVTQSTMFSCEAHNLKGLASSRTATVHL 181
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 71.4 bits (175), Expect = 2e-16
Identities = 17/93 (18%), Positives = 28/93 (30%), Gaps = 2/93 (2%)
Query: 44 LLYVTRNGSFVINNIAEKDTNVYTCTVSNAAGST-SKTIQMNVLVPPFFKDEQQESVAIV 102
+ I N +D +Y C ++A G T T+ + + F+ E
Sbjct: 51 VQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFR-EVVSPQEFK 109
Query: 103 VNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSH 135
+ C P P SW + S
Sbjct: 110 QGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISD 142
Score = 42.5 bits (100), Expect = 8e-06
Identities = 10/54 (18%), Positives = 19/54 (35%)
Query: 34 GQVIKRYLKDLLYVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLV 87
+ + + + N + I NI + D +Y C A + V+V
Sbjct: 134 NEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIV 187
Score = 34.4 bits (79), Expect = 0.007
Identities = 6/50 (12%), Positives = 12/50 (24%), Gaps = 1/50 (2%)
Query: 88 PPFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHYI 137
V + V +C+ G P + G + +
Sbjct: 2 LLQVT-ISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVV 50
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 72.9 bits (179), Expect = 2e-16
Identities = 23/92 (25%), Positives = 35/92 (38%), Gaps = 4/92 (4%)
Query: 49 RNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFK----DEQQESVAIVVN 104
+I ++ + D VY +N GS S T + V VP E +V +
Sbjct: 60 GYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRG 119
Query: 105 HPMNISCSHYGVPTPDFSWYKDGSLLRIQSHY 136
++I G P P +W K L+ HY
Sbjct: 120 EVVSIKIPFSGKPDPVITWQKGQDLIDNNGHY 151
Score = 42.1 bits (99), Expect = 2e-05
Identities = 10/37 (27%), Positives = 15/37 (40%)
Query: 53 FVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPP 89
N + KD Y N G KT++++V P
Sbjct: 163 VFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVP 199
Score = 38.6 bits (90), Expect = 3e-04
Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 87 VPPFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQS 134
+ P FK+E + ++ + + C G P P WY+ G +
Sbjct: 3 MAPHFKEELR-NLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADG 49
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 71.1 bits (174), Expect = 4e-16
Identities = 21/103 (20%), Positives = 38/103 (36%), Gaps = 6/103 (5%)
Query: 34 GQVIKR--YLKDLLYVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLV---- 87
G+ K+ + ++ S ++ ++ D YTC V N GS + T ++V+
Sbjct: 57 GKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRH 116
Query: 88 PPFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLL 130
P + + + VV + C Y P W K
Sbjct: 117 RPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKN 159
Score = 47.6 bits (113), Expect = 2e-07
Identities = 15/79 (18%), Positives = 29/79 (36%), Gaps = 2/79 (2%)
Query: 19 HSRYNYTNLPQSRNPGQVIKRYLKDLLYVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTS 78
H N + P + ++ + + + N+ E D Y C VSN G +
Sbjct: 155 HVEKNGSKYGPDGLPYLKVLKH--SGINSSNAEVLALFNVTEADAGEYICKVSNYIGQAN 212
Query: 79 KTIQMNVLVPPFFKDEQQE 97
++ + VL ++E
Sbjct: 213 QSAWLTVLPKQQAPGREKE 231
Score = 39.1 bits (91), Expect = 2e-04
Identities = 10/56 (17%), Positives = 21/56 (37%), Gaps = 3/56 (5%)
Query: 84 NVLVPPFFKDEQQ---ESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHY 136
N P++ + ++ A+ + + C G P P W K+G + +
Sbjct: 11 NNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRI 66
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 72.8 bits (178), Expect = 5e-16
Identities = 14/94 (14%), Positives = 27/94 (28%), Gaps = 4/94 (4%)
Query: 46 YVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFK-DEQQESVAIVVN 104
+ R ++++A DT YTC+ S + + ++ F E I
Sbjct: 285 TMIRILFAFVSSVARNDTGYYTCSSSKHPSQS---ALVTIVEKGFINATNSSEDYEIDQY 341
Query: 105 HPMNISCSHYGVPTPDFSWYKDGSLLRIQSHYIT 138
S P +W + +
Sbjct: 342 EEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLD 375
Score = 70.9 bits (173), Expect = 3e-15
Identities = 13/100 (13%), Positives = 29/100 (29%), Gaps = 2/100 (2%)
Query: 49 RNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKDEQQESVAIVVNHPMN 108
S VI + E Y + + A + + +++ + + + +
Sbjct: 101 GVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYT--LRRPYFRKMENQDA 158
Query: 109 ISCSHYGVPTPDFSWYKDGSLLRIQSHYITFFLFFQRLLL 148
+ C VP P W S + + +L
Sbjct: 159 LVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVL 198
Score = 67.0 bits (163), Expect = 5e-14
Identities = 15/93 (16%), Positives = 24/93 (25%), Gaps = 9/93 (9%)
Query: 46 YVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKDEQQESVAIVVNH 105
+ S + Y N +K +N+ P +
Sbjct: 373 GLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRKP---------QVLAEAS 423
Query: 106 PMNISCSHYGVPTPDFSWYKDGSLLRIQSHYIT 138
SC G P P ++W K + IT
Sbjct: 424 ASQASCFSDGYPLPSWTWKKCSDKSPNCTEEIT 456
Score = 54.7 bits (131), Expect = 8e-10
Identities = 13/103 (12%), Positives = 29/103 (28%), Gaps = 9/103 (8%)
Query: 42 KDLLYVTRNGSFVI----NNIAEKDTNVYTCTVSNAAG-STSKTIQMNVLVPPFFKDEQQ 96
V+ + E C N G ++ +++ P Q
Sbjct: 178 SQGESCKEESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQ- 236
Query: 97 ESVAIVVNHPMNISCS-HYGVPTPDFSWYKDGSLLRIQSHYIT 138
+ + V P+ I C + +W + L +++
Sbjct: 237 --LFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEM 277
Score = 53.5 bits (128), Expect = 2e-09
Identities = 9/82 (10%), Positives = 22/82 (26%), Gaps = 5/82 (6%)
Query: 55 INNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKDEQQESVAIVVNHPMNISCSHY 114
N+ + ++ Y + + + +V + V+ + +
Sbjct: 19 NNDSSVGKSSSYPMVSESPEDLG---CALRPQSSGTVYEAA--AVEVDVSASITLQVLVD 73
Query: 115 GVPTPDFSWYKDGSLLRIQSHY 136
W S L Q H+
Sbjct: 74 APGNISCLWVFKHSSLNCQPHF 95
Score = 43.1 bits (101), Expect = 8e-06
Identities = 10/51 (19%), Positives = 18/51 (35%)
Query: 51 GSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKDEQQESVAI 101
S +N + C N+ G++ +TI +N P F +
Sbjct: 474 SSSTLNMSEAIKGFLVKCCAYNSLGTSCETILLNSPGPFPFIQDGGTKHHH 524
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 70.3 bits (172), Expect = 5e-16
Identities = 24/119 (20%), Positives = 41/119 (34%), Gaps = 11/119 (9%)
Query: 31 RNPGQVIKRYLKDLLYVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLV--- 87
N V K NG+ I N+ D Y+C VS+ + + S + L+
Sbjct: 46 LNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIP 105
Query: 88 -------PPFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHYITF 139
P + ++ A ++ + + C G P PD W K + + T
Sbjct: 106 ERTTKPYPADIVVQFKDVYA-LMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTS 163
Score = 42.9 bits (101), Expect = 6e-06
Identities = 10/40 (25%), Positives = 14/40 (35%)
Query: 46 YVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNV 85
T I NI +D +Y C N G ++ V
Sbjct: 160 ISTSGAVLKIFNIQLEDEGIYECEAENIRGKDKHQARIYV 199
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 69.9 bits (171), Expect = 6e-16
Identities = 16/87 (18%), Positives = 29/87 (33%), Gaps = 2/87 (2%)
Query: 50 NGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKDEQQESVAIVVNHPMNI 109
N + IN +D+ Y C V + + + V P + S +
Sbjct: 55 NMEYRINKPRAEDSGEYHC-VYHFVSAPKANATIEVKAAPDIT-GHKRSENKNEGQDAMM 112
Query: 110 SCSHYGVPTPDFSWYKDGSLLRIQSHY 136
C G P P++ W K + + +
Sbjct: 113 YCKSVGYPHPEWMWRKKENGVFEEISN 139
Score = 38.3 bits (89), Expect = 3e-04
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 50 NGSFVINNIAEK-DTNVYTCTVSNAAGSTSKTIQMNVLV 87
I N+ D Y C +N+ GS S + + V V
Sbjct: 152 YTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRVRV 190
Score = 34.4 bits (79), Expect = 0.006
Identities = 8/47 (17%), Positives = 14/47 (29%), Gaps = 3/47 (6%)
Query: 87 VPPFFKDEQQESVAIVVNHPMNISCSHYGVPTP--DFSWYKDGSLLR 131
P +E + P+ + C+ W K+G L
Sbjct: 2 NEPRIV-TSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELT 47
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 72.0 bits (176), Expect = 6e-16
Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 4/89 (4%)
Query: 46 YVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLV----PPFFKDEQQESVAI 101
+ S V+ ++ D YTC V N GS +T ++VL P + +
Sbjct: 175 LRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTA 234
Query: 102 VVNHPMNISCSHYGVPTPDFSWYKDGSLL 130
V+ + C Y P W K +
Sbjct: 235 VLGSDVEFHCKVYSDAQPHIQWLKHVEVN 263
Score = 53.9 bits (129), Expect = 1e-09
Identities = 16/115 (13%), Positives = 32/115 (27%), Gaps = 24/115 (20%)
Query: 46 YVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSK---------------------TIQMN 84
+ + N + +D+ Y+C
Sbjct: 56 VLVGPQRLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGV 115
Query: 85 VLVPPFFKDE---QQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHY 136
P++ ++ +A+ + + C G PTP SW K+G R +
Sbjct: 116 DTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRI 170
Score = 46.5 bits (110), Expect = 6e-07
Identities = 12/71 (16%), Positives = 24/71 (33%)
Query: 19 HSRYNYTNLPQSRNPGQVIKRYLKDLLYVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTS 78
H N + + P + + ++N+ +D YTC N+ G +
Sbjct: 259 HVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSH 318
Query: 79 KTIQMNVLVPP 89
+ + VL
Sbjct: 319 HSAWLVVLPAE 329
Score = 40.8 bits (95), Expect = 6e-05
Identities = 13/51 (25%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Query: 88 PPFFKDEQQESVAIVVNHPMNISCS-HYGVPTPDFSWYKDGSLLRIQSHYI 137
P + QQE + + +SC G P W KDG+ L +
Sbjct: 7 VPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVL 57
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 72.4 bits (177), Expect = 7e-16
Identities = 15/110 (13%), Positives = 34/110 (30%), Gaps = 3/110 (2%)
Query: 32 NPGQVIKRYLKDLLYVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFF 91
+ + R + I++ D+ V+ C +N GS + T + V+ F
Sbjct: 254 KLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFI 313
Query: 92 --KDEQQESVAIVVNHPMNISCSHYGVPTPD-FSWYKDGSLLRIQSHYIT 138
+V + +++ + P P+ W +
Sbjct: 314 NIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYP 363
Score = 69.3 bits (169), Expect = 7e-15
Identities = 14/92 (15%), Positives = 26/92 (28%), Gaps = 7/92 (7%)
Query: 47 VTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKDEQQESVAIVVNHP 106
+ + + + YT VSN+ + + + V P +
Sbjct: 371 IRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTKPEI-------LTYDRLVN 423
Query: 107 MNISCSHYGVPTPDFSWYKDGSLLRIQSHYIT 138
+ C G P P WY + S +
Sbjct: 424 GMLQCVAAGFPEPTIDWYFCPGTEQRCSASVL 455
Score = 52.4 bits (125), Expect = 6e-09
Identities = 13/101 (12%), Positives = 32/101 (31%), Gaps = 8/101 (7%)
Query: 47 VTRNGSFVINNIAEK-DTNVYTCTVSNAAGS-TSKTIQMNVLV----PPFFKDEQQESVA 100
+I ++ C+V S S+ + V P + +
Sbjct: 164 PDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLL 223
Query: 101 IVVNHPMNISCSHYGVPTP-DFSWYKDGSLLRIQSHYITFF 140
++C+ V + +W ++ S ++Q Y ++
Sbjct: 224 RE-GEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWH 263
Score = 49.7 bits (118), Expect = 5e-08
Identities = 11/91 (12%), Positives = 27/91 (29%), Gaps = 4/91 (4%)
Query: 49 RNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKDEQQESVAIVVNHPMN 108
+ ++ +T YTCT + + +I + V P + S+ ++
Sbjct: 78 KQNEWITEKAEATNTGKYTCTNKHGLSN---SIYVFVRDPAKLFLVDR-SLYGKEDNDTL 133
Query: 109 ISCSHYGVPTPDFSWYKDGSLLRIQSHYITF 139
+ C ++S +
Sbjct: 134 VRCPLTDPEVTNYSLKGCQGKPLPKDLRFIP 164
Score = 45.8 bits (108), Expect = 1e-06
Identities = 8/80 (10%), Positives = 24/80 (30%), Gaps = 9/80 (11%)
Query: 66 YTCTV----SNAAGSTSKTIQMNVLVPPFFKDEQQESVAIVVNHPMNISCSHYGVPTPDF 121
+ C + GS+ ++ PP + + + + V + + C+
Sbjct: 10 FLCVLLLLLRVQTGSSQPSVSPGEPSPPSIHPGKSDLI-VRVGDEIRLLCT----DPGFV 64
Query: 122 SWYKDGSLLRIQSHYITFFL 141
W + ++ +
Sbjct: 65 KWTFEILDETNENKQNEWIT 84
Score = 45.8 bits (108), Expect = 1e-06
Identities = 11/81 (13%), Positives = 15/81 (18%)
Query: 18 MHSRYNYTNLPQSRNPGQVIKRYLKDLLYVTRNGSFVINNIAEKDTNVYTCTVSNAAGST 77
S P V + I++ A K C N G T
Sbjct: 441 YFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKT 500
Query: 78 SKTIQMNVLVPPFFKDEQQES 98
S +
Sbjct: 501 SAYFNFAFKGNNKEQIHPHHH 521
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 70.5 bits (172), Expect = 7e-16
Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 2/90 (2%)
Query: 50 NGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKDEQQESVAIVVNHPMNI 109
+ S + N+ D Y C V A G +K + VLV P + + + +
Sbjct: 83 DASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFVDGSEE-IGNDFKL 141
Query: 110 SC-SHYGVPTPDFSWYKDGSLLRIQSHYIT 138
C G F W K + + ++
Sbjct: 142 KCEPKEGSLPLQFEWQKLSDSQTMPTPWLA 171
Score = 49.3 bits (117), Expect = 4e-08
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 43 DLLYVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPP 89
L + + N + + + Y+CTV N GS ++++V VPP
Sbjct: 168 PWLAEMTSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDV-VPP 213
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 70.0 bits (171), Expect = 1e-15
Identities = 20/94 (21%), Positives = 34/94 (36%), Gaps = 4/94 (4%)
Query: 41 LKDLLYVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLV----PPFFKDEQQ 96
+ + + S V+ ++ D YTC V N GS +T ++VL P +
Sbjct: 62 IGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLP 121
Query: 97 ESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLL 130
+ V+ + C Y P W K +
Sbjct: 122 ANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVN 155
Score = 50.7 bits (121), Expect = 1e-08
Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 3/88 (3%)
Query: 21 RYNYTNLPQSRNPGQVIKRYLKDLLYVT--RNGSFVINNIAEKDTNVYTCTVSNAAGSTS 78
++ N + G LK + + + + N++E+D Y C +N G
Sbjct: 150 KHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAE 209
Query: 79 KTIQMNVLVPPFFKDEQQES-VAIVVNH 105
K ++V P ++E E+ A V+H
Sbjct: 210 KAFWLSVHGPRAAEEELVEADEAGSVHH 237
Score = 39.5 bits (92), Expect = 1e-04
Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 88 PPFFKDEQQ---ESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHYITFFLFFQ 144
P++ ++ + +A+ + + C G PTP SW K+G R + L Q
Sbjct: 11 APYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQ 70
Query: 145 RLLL 148
+ L
Sbjct: 71 QWSL 74
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 69.4 bits (170), Expect = 1e-15
Identities = 17/90 (18%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
Query: 50 NGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNV---LVPPFFKDEQQESVAIVVNHP 106
I + + ++ Y+ +N +G + T ++ V PP F ++ +S+ +
Sbjct: 62 RAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFV-QRLQSMTVRQGSQ 120
Query: 107 MNISCSHYGVPTPDFSWYKDGSLLRIQSHY 136
+ + G+PTP +Y+DG+ ++ +
Sbjct: 121 VRLQVRVTGIPTPVVKFYRDGAEIQSSLDF 150
Score = 37.0 bits (86), Expect = 9e-04
Identities = 8/34 (23%), Positives = 17/34 (50%)
Query: 52 SFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNV 85
S +I +D+ Y+ +N+ G + T ++ V
Sbjct: 160 SLLIAEAYPEDSGTYSVNATNSVGRATSTAELLV 193
Score = 36.6 bits (85), Expect = 0.001
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 88 PPFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLR 131
P F + +SV ++ G P P+ SW++DG ++
Sbjct: 5 APTFT-QPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVIS 47
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 70.9 bits (173), Expect = 2e-15
Identities = 20/123 (16%), Positives = 39/123 (31%), Gaps = 6/123 (4%)
Query: 31 RNPGQVIKRYLKDLLYVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLV-PP 89
+N ++ ++G+ + ++D+ Y CT NA+ +I++ V
Sbjct: 61 KNDSARTVPGEEETRMWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTD 120
Query: 90 FFKDEQQESVAIVVNHPMNISCSHY-----GVPTPDFSWYKDGSLLRIQSHYITFFLFFQ 144
F + ++ + C WYKD LL +
Sbjct: 121 AFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTT 180
Query: 145 RLL 147
LL
Sbjct: 181 HLL 183
Score = 58.2 bits (140), Expect = 5e-11
Identities = 14/106 (13%), Positives = 38/106 (35%), Gaps = 13/106 (12%)
Query: 34 GQVIKRYLKDLLYVTRNGSFVINNIAEKDTNVYTCTVSNAAGST----SKTIQMNVL--- 86
++ + + L V +++++A +D Y C ++ A +++I++ +
Sbjct: 163 SLLLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKK 222
Query: 87 --VPPFFKDEQQESVAIVVNHPMNISCS---HYGVPTPDFSWYKDG 127
P + ++ + + I C G P W+
Sbjct: 223 EETIPVIISPLKT-ISASLGSRLTIPCKVFLGTGTPLTTMLWWTAN 267
Score = 35.4 bits (81), Expect = 0.004
Identities = 4/36 (11%), Positives = 12/36 (33%), Gaps = 1/36 (2%)
Query: 48 TRNGSFVINNIAEKDTNV-YTCTVSNAAGSTSKTIQ 82
+ + + +D ++ + C V N +
Sbjct: 295 YIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTT 330
Score = 34.3 bits (78), Expect = 0.010
Identities = 8/69 (11%), Positives = 21/69 (30%), Gaps = 13/69 (18%)
Query: 91 FKDEQQESVAIVVNHPMNISCSHY-------GVPTPDFSWYKDGSLLRI---QSHYITFF 140
F+ + + P+ + C P + +W+K+ S + + +
Sbjct: 20 FRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQ 79
Query: 141 ---LFFQRL 146
L+
Sbjct: 80 DGALWLLPA 88
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 70.2 bits (172), Expect = 2e-15
Identities = 25/95 (26%), Positives = 36/95 (37%), Gaps = 5/95 (5%)
Query: 47 VTRNGSFVINNIAEKDTNVYTCTVSNAAGS-TSKTIQMNVLV---PPFFKDEQQESVAIV 102
R+G+ I + E D Y C +N+AG S + V V P F S I+
Sbjct: 160 QLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFS-ILPMSHEIM 218
Query: 103 VNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHYI 137
+NI+C G P P W + L +
Sbjct: 219 PGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDDMP 253
Score = 62.9 bits (153), Expect = 8e-13
Identities = 19/111 (17%), Positives = 37/111 (33%), Gaps = 7/111 (6%)
Query: 38 KRYLKDLLYVTRNGSFVINNIA-EKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFK---- 92
+R+ + I + +D NVY C N+ G + ++ VL
Sbjct: 50 QRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFP 109
Query: 93 --DEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHYITFFL 141
D + + + C+ G P P+ +W+KD + +
Sbjct: 110 NIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQ 160
Score = 46.4 bits (110), Expect = 6e-07
Identities = 11/49 (22%), Positives = 17/49 (34%)
Query: 49 RNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKDEQQE 97
G V+ KD+ YTC ++ G Q+ V P +
Sbjct: 253 PVGRNVLELTDVKDSANYTCVAMSSLGVIEAVAQITVKSLPKAGTKHHH 301
Score = 44.0 bits (104), Expect = 3e-06
Identities = 13/56 (23%), Positives = 19/56 (33%), Gaps = 1/56 (1%)
Query: 85 VLVPPFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHYITFF 140
PP F ++ + V + C G P P +W K G + Q F
Sbjct: 3 GEEPPRFI-KEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEF 57
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 70.5 bits (172), Expect = 2e-15
Identities = 17/103 (16%), Positives = 36/103 (34%), Gaps = 9/103 (8%)
Query: 46 YVTRNGSFVINNIAEKDTNVYTCTVSNAAGST----SKTIQMNVL-----VPPFFKDEQQ 96
+ ++ N+AEK YTC S ++ I+ L P
Sbjct: 157 FSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPAN 216
Query: 97 ESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHYITF 139
E++ + + + + C+ G + W +GS++ +
Sbjct: 217 ETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGE 259
Score = 57.8 bits (139), Expect = 5e-11
Identities = 17/123 (13%), Positives = 32/123 (26%), Gaps = 18/123 (14%)
Query: 25 TNLPQSRNPGQVIKRYLKDLLYVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMN 84
+ P S I +D+ Y C V N++ I
Sbjct: 45 SKTPVSTEQASRI---------HQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAK 95
Query: 85 VLVPP---FFKDEQQESVAIVVNHPMNISCSHY------GVPTPDFSWYKDGSLLRIQSH 135
+ + + + V + C + P WYKD L + +
Sbjct: 96 FVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNI 155
Query: 136 YIT 138
+ +
Sbjct: 156 HFS 158
Score = 37.0 bits (85), Expect = 0.001
Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 4/36 (11%)
Query: 55 INNIAEKDTN-VYTCTVSNAAGSTSKTIQMNVLVPP 89
I+ I + +TC N G + IQ L+ P
Sbjct: 281 ISEIESRFYKHPFTCFAKNTHGIDAAYIQ---LIYP 313
Score = 30.1 bits (67), Expect = 0.21
Identities = 11/64 (17%), Positives = 20/64 (31%), Gaps = 2/64 (3%)
Query: 86 LVPPFFKD-EQQESVAIVVNHPMNISCSHYGVPTP-DFSWYKDGSLLRIQSHYITFFLFF 143
L K+ E++ + N C +WYKD S + + +
Sbjct: 1 LEADKCKEREEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQH 60
Query: 144 QRLL 147
+ L
Sbjct: 61 KEKL 64
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1,
isoform 2; hydrolase, immunoglobulin domain, nucleus,
protease; 2.80A {Homo sapiens}
Length = 218
Score = 67.6 bits (165), Expect = 8e-15
Identities = 19/102 (18%), Positives = 34/102 (33%), Gaps = 15/102 (14%)
Query: 49 RNGSFVINNIAEKDTNVYTCTVSNAAGS-TSKTIQMNVLVPPFFKDEQQ----------- 96
+ N + KD Y C V+N S+ Q++V P
Sbjct: 63 NTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQIC 122
Query: 97 ---ESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSH 135
S ++ + + C G P P + W+K+ L ++
Sbjct: 123 VEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETK 164
Score = 42.6 bits (100), Expect = 1e-05
Identities = 9/58 (15%), Positives = 18/58 (31%), Gaps = 1/58 (1%)
Query: 73 AAGSTSKTIQMNVLVPPFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLL 130
++ V ES A++ + + C G P + W+K +
Sbjct: 3 SSHHHHHHSSGLVPRGSKI-TVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEI 59
Score = 42.2 bits (99), Expect = 1e-05
Identities = 9/55 (16%), Positives = 19/55 (34%), Gaps = 3/55 (5%)
Query: 41 LKD--LLYVTRNGSFVINNIAEKDTNVYTCTVSNAAGS-TSKTIQMNVLVPPFFK 92
K+ L +++ + + Y C V N S SK +++ +
Sbjct: 153 FKNELPLTHETKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNLG 207
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 67.2 bits (164), Expect = 2e-14
Identities = 14/97 (14%), Positives = 32/97 (32%), Gaps = 11/97 (11%)
Query: 50 NGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKDEQQESVAIVVNHPMNI 109
+ +I ++KD +Y + + G +++ E + +A + + I
Sbjct: 60 ICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIA-LSATDLKI 118
Query: 110 SCS----------HYGVPTPDFSWYKDGSLLRIQSHY 136
+ Y V +W +GS +R
Sbjct: 119 QSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRV 155
Score = 66.1 bits (161), Expect = 7e-14
Identities = 19/113 (16%), Positives = 32/113 (28%), Gaps = 22/113 (19%)
Query: 49 RNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLV--------------------- 87
IN D Y + + KT+ ++
Sbjct: 162 EQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNR 221
Query: 88 PPFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHYITFF 140
+ V I +N++C+ +G P P+ SW K+ L H F
Sbjct: 222 ARVLG-GLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKF 273
Score = 49.1 bits (117), Expect = 7e-08
Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 2/57 (3%)
Query: 34 GQVIK--RYLKDLLYVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVP 88
+ + + R F IN ++ D+ Y V N GS + ++V +P
Sbjct: 260 EKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFIP 316
Score = 41.4 bits (97), Expect = 3e-05
Identities = 8/55 (14%), Positives = 17/55 (30%), Gaps = 3/55 (5%)
Query: 83 MNVLVPPFFKDEQQESVAIVVNHPMNISCSHYGV-PTPDFSWYKDGSLLRIQSHY 136
++ P F + V + + C + WYKD + + +
Sbjct: 2 IDPFTGPHFVEYLSWEV--TGECNVLLKCKVANIKKETHIVWYKDEREISVDEKH 54
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 66.9 bits (163), Expect = 3e-14
Identities = 17/93 (18%), Positives = 30/93 (32%), Gaps = 1/93 (1%)
Query: 48 TRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKDEQQESVAIVVNHPM 107
+ + N K+T Y CT + S TI + V P + + V +V
Sbjct: 48 SPGSTLTTRNATFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNLLAQEVTVVEGQEA 107
Query: 108 NISCS-HYGVPTPDFSWYKDGSLLRIQSHYITF 139
+ C S ++G ++ F
Sbjct: 108 VLPCLITDPALKDSVSLMREGGRQVLRKTVYFF 140
Score = 56.1 bits (135), Expect = 2e-10
Identities = 22/87 (25%), Positives = 27/87 (31%), Gaps = 6/87 (6%)
Query: 47 VTRNGSFVINNIAEKDTNVYTCTVSNAA-GSTSKTIQMNV----LVPPFFKDEQQESVAI 101
+ F+I D+N Y C STS I + V PP K E + V I
Sbjct: 140 FSPWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRI 199
Query: 102 VVNHPMNISCSHYGVPTPDFSWYKDGS 128
I CS K G
Sbjct: 200 -RGEAAQIVCSATNAEVGFNVILKRGD 225
Score = 53.4 bits (128), Expect = 2e-09
Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 10/60 (16%)
Query: 46 YVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKDEQQESVAIVVNH 105
Y + + +N + +D +Y+C SN G+ + T+ V+ +H
Sbjct: 240 YYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVESHH----------HHHHH 289
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 66.8 bits (162), Expect = 5e-14
Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 2/92 (2%)
Query: 49 RNGSFVINNIAEKDT-NVYTCTVSNAAGSTSKTIQMNVLVPPFFKDEQQESVAIVVNHPM 107
+NG I N D+ Y CTV+ G + I + + P + + + +
Sbjct: 87 KNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGI 146
Query: 108 NISCS-HYGVPTPDFSWYKDGSLLRIQSHYIT 138
++ C Y + +WYK+ L I +
Sbjct: 147 DLYCGILYAKHYNNITWYKNNQELIIDGTKYS 178
Score = 56.4 bits (135), Expect = 2e-10
Identities = 15/97 (15%), Positives = 28/97 (28%), Gaps = 12/97 (12%)
Query: 46 YVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPF--------FKDEQQE 97
Y + +I+N +D+ Y C V I ++ FK
Sbjct: 177 YSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDP 236
Query: 98 SVAIVVNHPMNISCSHYGVPTPD----FSWYKDGSLL 130
+ + + P NI+C+ W +
Sbjct: 237 KINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWI 273
Score = 40.2 bits (93), Expect = 1e-04
Identities = 8/38 (21%), Positives = 14/38 (36%), Gaps = 1/38 (2%)
Query: 49 RNGSFVINNIAEKDT-NVYTCTVSNAAGSTSKTIQMNV 85
+ N+ E+ N YTC N + T + +
Sbjct: 291 TEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVL 328
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 64.5 bits (157), Expect = 7e-14
Identities = 17/100 (17%), Positives = 37/100 (37%), Gaps = 8/100 (8%)
Query: 42 KDLLYVTRNGSFVINNIAEKDTNVYTCTVSNAAGS--TSKTIQMNVLVPPFFKDEQQESV 99
KD + +NG+ I ++ D ++Y ++ + G K + + +
Sbjct: 57 KDTYKLFKNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERV------SKPK 110
Query: 100 AIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHYITF 139
++C P+ + Y+DG L++ IT
Sbjct: 111 ISWTCINTTLTCEVMNGTDPELNLYQDGKHLKLSQRVITH 150
Score = 37.9 bits (88), Expect = 3e-04
Identities = 5/45 (11%), Positives = 15/45 (33%)
Query: 41 LKDLLYVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNV 85
+D ++ + + + + + CT N S ++
Sbjct: 135 YQDGKHLKLSQRVITHKWTTSLSAKFKCTAGNKVSKESSVEPVSC 179
Score = 26.4 bits (58), Expect = 3.1
Identities = 5/43 (11%), Positives = 10/43 (23%), Gaps = 2/43 (4%)
Query: 92 KDEQQESVAIVVNHP--MNISCSHYGVPTPDFSWYKDGSLLRI 132
+ + ++I D W K +I
Sbjct: 2 EITNALETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKI 44
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 64.7 bits (157), Expect = 7e-14
Identities = 11/86 (12%), Positives = 23/86 (26%), Gaps = 1/86 (1%)
Query: 50 NGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKDEQQESVAIVVNHPMNI 109
V+ Y C + +K ++V+ P E + +
Sbjct: 66 TFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVH-SERSQFPDFSVLTV 124
Query: 110 SCSHYGVPTPDFSWYKDGSLLRIQSH 135
+C+ P P W + +
Sbjct: 125 TCTVNAFPHPHVQWLMPEGVEPAPTA 150
Score = 32.7 bits (74), Expect = 0.022
Identities = 6/54 (11%), Positives = 13/54 (24%), Gaps = 4/54 (7%)
Query: 30 SRNPGQVIKRYLKDLLY-VTRNGSFVI---NNIAEKDTNVYTCTVSNAAGSTSK 79
G + ++GS + ++ + TC N
Sbjct: 139 LMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAHG 192
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 65.5 bits (159), Expect = 8e-14
Identities = 15/104 (14%), Positives = 34/104 (32%), Gaps = 5/104 (4%)
Query: 32 NPGQVIKRYLKDLLYVTRNGSFVINNIAEKDTNVYTCTVSNAAGST----SKTIQMNVLV 87
+P + + ++ E + ++C+ + ++T ++ VL
Sbjct: 123 HPRAKVTLNGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLY 182
Query: 88 PPFFKDEQQ-ESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLL 130
P + + N C +G P P+ KDG+
Sbjct: 183 GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFP 226
Score = 43.5 bits (102), Expect = 6e-06
Identities = 9/86 (10%), Positives = 20/86 (23%), Gaps = 3/86 (3%)
Query: 54 VINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKDEQQESVAIVVNHPMNISCSH 113
V ++ T TC V S + + P + + + + C
Sbjct: 64 VSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKP-EVSEGTEVTVKCE- 121
Query: 114 YGVPTPDFSWYKDGSLLRIQSHYITF 139
P + + +
Sbjct: 122 -AHPRAKVTLNGVPAQPLGPRAQLLL 146
Score = 42.7 bits (100), Expect = 9e-06
Identities = 9/46 (19%), Positives = 18/46 (39%), Gaps = 5/46 (10%)
Query: 48 TRNGSFV-----INNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVP 88
++G+F + Y C + G ++ + +NVL P
Sbjct: 220 LKDGTFPLPIGESVTVTRDLEGTYLCRARSTQGEVTREVTVNVLSP 265
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 64.1 bits (156), Expect = 1e-13
Identities = 28/101 (27%), Positives = 37/101 (36%), Gaps = 9/101 (8%)
Query: 46 YVTRNGSFVINNIA-----EKDTNVYTCTVSNAAGST-SKTIQMNVLV-PPFFKDEQQES 98
+ +GS I D VY C N G S + V + F+ +
Sbjct: 62 MLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFR-QNPSD 120
Query: 99 VAIVVNHPMNISCS-HYGVPTPDFSWYKDGSLLRIQSHYIT 138
V + V P + C G P P SW KDGS L + IT
Sbjct: 121 VMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERIT 161
Score = 48.3 bits (115), Expect = 8e-08
Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 46 YVTRNGSFVINNIAEKDTNVYTCTVSNAAGS-TSKTIQMNVLVPPFF 91
R G +I + D Y C +N G S+ ++ VL P F
Sbjct: 160 ITIRGGKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLERPSF 206
Score = 41.3 bits (97), Expect = 3e-05
Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Query: 87 VPPFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHYITF 139
PP + + + + P ++C G PTP WYK G +
Sbjct: 8 FPPRIVEHPSD-LIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRS 59
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 64.1 bits (156), Expect = 1e-13
Identities = 18/104 (17%), Positives = 31/104 (29%), Gaps = 22/104 (21%)
Query: 54 VINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLV---------------------PPFFK 92
IN D Y + + KT+ ++
Sbjct: 62 QINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLG 121
Query: 93 DEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHY 136
+ V I +N++C+ +G P P+ SW K+ L H
Sbjct: 122 -GLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHC 164
Score = 48.7 bits (116), Expect = 6e-08
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 49 RNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVP 88
R F IN ++ D+ Y V N GS + ++V +P
Sbjct: 172 RTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFIP 211
Score = 31.8 bits (72), Expect = 0.059
Identities = 7/27 (25%), Positives = 10/27 (37%)
Query: 110 SCSHYGVPTPDFSWYKDGSLLRIQSHY 136
S Y V +W +GS +R
Sbjct: 24 SFVTYYVEDLKVNWSHNGSAIRYSDRV 50
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 64.1 bits (156), Expect = 2e-13
Identities = 19/102 (18%), Positives = 35/102 (34%), Gaps = 9/102 (8%)
Query: 51 GSFVINNIA-EKDTNVYTCTVSNAAGSTSKTIQMNVL-------VPPFFKDEQQESVAIV 102
I + +D +Y C SN G S + ++ VL P D + +
Sbjct: 63 SVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTI-DMGPQLKVVE 121
Query: 103 VNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHYITFFLFFQ 144
+ C+ G P P+ +W+KD + ++
Sbjct: 122 RTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRS 163
Score = 45.6 bits (108), Expect = 8e-07
Identities = 13/56 (23%), Positives = 16/56 (28%), Gaps = 1/56 (1%)
Query: 85 VLVPPFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHYITFF 140
PP F V + C G P P W K G + Q + F
Sbjct: 3 GETPPRFT-RTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEF 57
Score = 42.9 bits (101), Expect = 8e-06
Identities = 12/49 (24%), Positives = 17/49 (34%), Gaps = 1/49 (2%)
Query: 45 LYVTRNGSFVINNIAEKDTNVYTCTVSNAAGST-SKTIQMNVLVPPFFK 92
L G+ I E D Y C +N+AG+ S + V
Sbjct: 161 LRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRGTKHHH 209
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin
superfamily, integrin-binding, cell adhesion protein;
1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A
1vsc_A
Length = 202
Score = 63.6 bits (154), Expect = 2e-13
Identities = 17/98 (17%), Positives = 34/98 (34%), Gaps = 4/98 (4%)
Query: 42 KDLLYVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKDEQQESVAI 101
+ + +N ++ + + Y CT + + K IQ+ + P E S +
Sbjct: 45 GKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVEIYSFPKD-PEIHLSGPL 103
Query: 102 VVNHPMNISCSHYGV---PTPDFSWYKDGSLLRIQSHY 136
P+ + CS V + K L++ Q
Sbjct: 104 EAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFL 141
Score = 30.9 bits (69), Expect = 0.12
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 96 QESVAIVVNHPMNISCSHYGVPTPDFSWYKDG 127
+ + ++++CS G +P FSW
Sbjct: 8 ESRYLAQIGDSVSLTCSTTGCESPFFSWRTQI 39
Score = 29.4 bits (65), Expect = 0.31
Identities = 6/50 (12%), Positives = 12/50 (24%), Gaps = 7/50 (14%)
Query: 47 VTRNGSFVINNIAEKDTNVYTCTVSNAAGST-------SKTIQMNVLVPP 89
T++ + E V C ++ V + P
Sbjct: 150 ETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVYISP 199
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 64.8 bits (157), Expect = 3e-13
Identities = 13/85 (15%), Positives = 27/85 (31%), Gaps = 1/85 (1%)
Query: 47 VTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKDEQQESVAIVVNHP 106
VT + + E C V+ +++ +NV P E + +
Sbjct: 190 VTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQRMD 249
Query: 107 MNISCSHYGVPTP-DFSWYKDGSLL 130
+ ++C P ++ W L
Sbjct: 250 VKLTCKADANPPATEYHWTTLNGSL 274
Score = 56.7 bits (136), Expect = 1e-10
Identities = 16/94 (17%), Positives = 32/94 (34%), Gaps = 6/94 (6%)
Query: 49 RNGSFVINNIAEKDTNVYTCTVSN-AAGSTSKTIQMNVLVPPFFKDEQQESVAIVV---- 103
+G+ ++ + +D VY C + G+ + + V+ P E ++V
Sbjct: 90 TDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQD 149
Query: 104 NHPMNISC-SHYGVPTPDFSWYKDGSLLRIQSHY 136
+ + +C S G P SW
Sbjct: 150 DKVLVATCTSANGKPPSVVSWETRLKGEAEYQEI 183
Score = 52.1 bits (124), Expect = 6e-09
Identities = 9/57 (15%), Positives = 17/57 (29%)
Query: 41 LKDLLYVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKDEQQE 97
L + F I Y C +N G+ S +++N+ +
Sbjct: 274 LPKGVEAQNRTLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNITEAAALEHHHHH 330
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 63.6 bits (154), Expect = 5e-13
Identities = 24/89 (26%), Positives = 33/89 (37%), Gaps = 3/89 (3%)
Query: 49 RNGSFVINNIAEKDTNVYTCTVSNA-AGSTSKTIQMNVLVPPFFKDEQQESVAIVVNHPM 107
RN S + + +D YTC GS S I + VL P E Q+ V +
Sbjct: 77 RNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQK-VQLTGEPVP 135
Query: 108 NISC-SHYGVPTPDFSWYKDGSLLRIQSH 135
C S G P +W+ D + S
Sbjct: 136 MARCVSTGGRPPAQITWHSDLGGMPNTSQ 164
Score = 59.7 bits (144), Expect = 1e-11
Identities = 16/103 (15%), Positives = 37/103 (35%), Gaps = 3/103 (2%)
Query: 47 VTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSK--TIQMNVLVPPFFKDEQQESVAIVVN 104
VT +++ ++ D TC V + + + T+ + V PP ++ +
Sbjct: 173 VTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQ 232
Query: 105 HPMNISCSHYGVPTP-DFSWYKDGSLLRIQSHYITFFLFFQRL 146
+ ++C P P ++W L + L + +
Sbjct: 233 NEATLTCDARSNPEPTGYNWSTTMGPLPPFAVAQGAQLLIRPV 275
Score = 45.5 bits (107), Expect = 1e-06
Identities = 8/39 (20%), Positives = 16/39 (41%)
Query: 47 VTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNV 85
V + +I + + C V+NA G+ + + V
Sbjct: 264 VAQGAQLLIRPVDKPINTTLICNVTNALGARQAELTVQV 302
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 63.0 bits (153), Expect = 6e-13
Identities = 17/116 (14%), Positives = 35/116 (30%), Gaps = 13/116 (11%)
Query: 30 SRNPGQVIKRYLKD---LLYVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVL 86
++ Y ++ + N + I Y C+ TS I + V
Sbjct: 107 WKDKLVYNVLYYRNGKAFKFFHWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVK 166
Query: 87 V---PPFFKDEQQESVAIVVNHPMNISCSHYGVPTPD-----FSWYKDGSLLRIQS 134
P + ++ + + +SC + FS+Y LR ++
Sbjct: 167 ELFPAPVLN--ASVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRN 220
Score = 58.4 bits (141), Expect = 3e-11
Identities = 15/88 (17%), Positives = 29/88 (32%), Gaps = 5/88 (5%)
Query: 48 TRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKDEQQESVAIVVNHPM 107
T S+ I + + D+ Y C S IQ+ + Q S P+
Sbjct: 45 TSTPSYRITSASVNDSGEYRCQRGL--SGRSDPIQLEIHRGWLL--LQVSSRVFTEGEPL 100
Query: 108 NISC-SHYGVPTPDFSWYKDGSLLRIQS 134
+ C + + +Y++G +
Sbjct: 101 ALRCHAWKDKLVYNVLYYRNGKAFKFFH 128
Score = 33.7 bits (77), Expect = 0.012
Identities = 8/44 (18%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Query: 46 YVTRNGSFVINNIAEKDTNVYTCTVSNAAGST---SKTIQMNVL 86
+ + I +D+ +Y C + G+ S +++ VL
Sbjct: 218 GRNTSSEYQILTARREDSGLYWCEAATEDGNVLKRSPELELQVL 261
Score = 28.7 bits (64), Expect = 0.61
Identities = 5/38 (13%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 98 SVAIVVNHPMNISCSHYGVPTP-DFSWYKDGSLLRIQS 134
V++ + + C +P W+ +G+ + +
Sbjct: 10 WVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTST 47
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 62.1 bits (151), Expect = 7e-13
Identities = 22/117 (18%), Positives = 41/117 (35%), Gaps = 13/117 (11%)
Query: 34 GQVIKRYLKDLLYVTRNGSFVINNI----AEKDTNVYTCTVSNAAGST-SKTIQMNVLV- 87
G+ + + + G I I A +D Y C N G S + +
Sbjct: 44 GKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEG 103
Query: 88 ------PPFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHYIT 138
P + + I V H + ++C G PTP+ W K+ + + + + +
Sbjct: 104 DKTPAGFPVI-TQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYS 159
Score = 47.5 bits (113), Expect = 2e-07
Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Query: 46 YVTRNGSFVINNIAEKDTNVYTCTVSNAAGS-TSKTIQMNVLVPPFFKDEQQE 97
Y ++G I N E+D Y C N+ G+ SK + V V
Sbjct: 158 YSLKDGFLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVRRVGTKHHHH 210
Score = 39.0 bits (91), Expect = 2e-04
Identities = 11/57 (19%), Positives = 19/57 (33%), Gaps = 1/57 (1%)
Query: 85 VLVPPFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHYITFFL 141
PP + ++ + V + C+ G P P W K+G + T
Sbjct: 3 GAHPPEII-RKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLE 58
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 61.9 bits (150), Expect = 2e-12
Identities = 19/110 (17%), Positives = 31/110 (28%), Gaps = 7/110 (6%)
Query: 30 SRNPGQVIKRYLKDLLYVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPP 89
P Y + NN ++T Y CT S I + V P
Sbjct: 35 DGPPSPHWTLYSDG-----SSSILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPA 89
Query: 90 FFKDEQQESVAIVVNHPMNISCSHYG-VPTPDFSWYK-DGSLLRIQSHYI 137
+ + V + + + C V S + G L ++Y
Sbjct: 90 RPWNVLAQEVVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYS 139
Score = 55.4 bits (133), Expect = 5e-10
Identities = 18/96 (18%), Positives = 28/96 (29%), Gaps = 7/96 (7%)
Query: 47 VTRNGSFVINNIAEKDTNVYTCTVSNAAGST-SKTIQMNVLV----PPFFKDEQQESVAI 101
+ F I+ + Y C+ S +I++ V PP E V
Sbjct: 140 FSPWHGFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVR- 198
Query: 102 VVNHPMNISCSHYGVPTP-DFSWYKDGSLLRIQSHY 136
+ I CS V D + + L I
Sbjct: 199 IRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQS 234
Score = 50.0 bits (119), Expect = 3e-08
Identities = 7/49 (14%), Positives = 17/49 (34%)
Query: 49 RNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKDEQQE 97
+ + ++ + + Y+C SN G S ++ V+
Sbjct: 243 KVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVESAGNSHHHHH 291
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 61.0 bits (148), Expect = 2e-12
Identities = 19/93 (20%), Positives = 32/93 (34%), Gaps = 8/93 (8%)
Query: 46 YVTRNGSF----VINNIAEKDTNVYTCTVSNAAGST-SKTIQMNVLV-PPFFKDEQQESV 99
++G+ + E+D Y C N G S+ + + V F + +
Sbjct: 60 VQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDF-RVEPKDT 118
Query: 100 AIVVNHPMNISCS-HYGVPTPDFSWYKDGSLLR 131
+ + C G+P P W KDG L
Sbjct: 119 RVAKGETALLECGPPKGIPEPTLIWIKDGVPLD 151
Score = 47.6 bits (113), Expect = 2e-07
Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Query: 45 LYVTRNGSFVINNIAEKDTNVYTCTVSNAAGS-TSKTIQMNVLVPPFFKDEQQ 96
+ + G+ +I+N+ D Y C N G+ S ++ V V
Sbjct: 164 VRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQVKAAAHHHHH 216
Score = 39.1 bits (91), Expect = 1e-04
Identities = 13/55 (23%), Positives = 19/55 (34%), Gaps = 1/55 (1%)
Query: 88 PPFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHYITFFLF 142
P E + + N P ++C G P P W+KDG + F
Sbjct: 9 SPRII-EHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQF 62
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 62.2 bits (150), Expect = 2e-12
Identities = 14/87 (16%), Positives = 30/87 (34%), Gaps = 5/87 (5%)
Query: 49 RNGSFVINNIAEKDTNVYTCTVSNAAGST----SKTIQMNVLVPPFFKDEQQ-ESVAIVV 103
++ E + ++C+ + ++T ++ VL P + +
Sbjct: 325 PRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPE 384
Query: 104 NHPMNISCSHYGVPTPDFSWYKDGSLL 130
N C +G P P+ KDG+
Sbjct: 385 NSQQTPMCQAWGNPLPELKCLKDGTFP 411
Score = 46.8 bits (110), Expect = 5e-07
Identities = 11/97 (11%), Positives = 25/97 (25%), Gaps = 3/97 (3%)
Query: 42 KDLLYVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKDEQQESVAI 101
K L + N V ++ + C + G ++ + V P +
Sbjct: 39 KKELLLPGNNRKVYELSNVQEDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQ 98
Query: 102 VVNHPMNISC---SHYGVPTPDFSWYKDGSLLRIQSH 135
V + + C + L+ +
Sbjct: 99 PVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPA 135
Score = 42.9 bits (100), Expect = 1e-05
Identities = 10/98 (10%), Positives = 23/98 (23%), Gaps = 1/98 (1%)
Query: 34 GQVIKRYLKDLLYVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKD 93
Q + + + V ++ T TC V S + + P
Sbjct: 229 DQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNV 288
Query: 94 EQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLR 131
+ + + + C + + L
Sbjct: 289 ILTKPE-VSEGTEVTVKCEAHPRAKVTLNGVPAQPLGP 325
Score = 42.5 bits (99), Expect = 2e-05
Identities = 9/46 (19%), Positives = 19/46 (41%), Gaps = 5/46 (10%)
Query: 48 TRNGSFVI-----NNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVP 88
++G+F + + Y C + G ++ + +NVL P
Sbjct: 405 LKDGTFPLPIGESVTVTRDLEGTYLCRARSTQGEVTREVTVNVLSP 450
Score = 40.6 bits (94), Expect = 7e-05
Identities = 15/114 (13%), Positives = 29/114 (25%), Gaps = 13/114 (11%)
Query: 34 GQVIKRYLKDLLYVTRNGSFVINNIAEKDTNVYTCTVSNAAGS--------TSKTIQMNV 85
+ +KR + + + + + ++C TS Q+
Sbjct: 127 EKELKR--EPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQT 184
Query: 86 LVPPFFKDEQQESVAIVVNHPMNISCSHYG---VPTPDFSWYKDGSLLRIQSHY 136
V P + + V+ + CS G V L Y
Sbjct: 185 FVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTY 238
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 61.7 bits (149), Expect = 3e-12
Identities = 23/106 (21%), Positives = 35/106 (33%), Gaps = 5/106 (4%)
Query: 33 PGQVIKRYLKDLLYVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFK 92
+ + G + N ++ + TC N G ++Q+NV P +
Sbjct: 195 TELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNVSFPASVQ 254
Query: 93 DEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHYIT 138
V H I S G P P W +GS+L S T
Sbjct: 255 LHT-----AVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFT 295
Score = 52.8 bits (126), Expect = 4e-09
Identities = 10/43 (23%), Positives = 16/43 (37%)
Query: 47 VTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPP 89
R+G +N + YT +N G S +I + P
Sbjct: 305 TVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNP 347
Score = 25.9 bits (56), Expect = 5.6
Identities = 8/76 (10%), Positives = 15/76 (19%), Gaps = 1/76 (1%)
Query: 56 NNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKDEQQESVAIVVNHPMNISCSHYG 115
E V + + P K + ++ V + + C G
Sbjct: 126 RWEEEGLGGVPEQKLQCHGQGPLAHMPNASCGVPTLKVQVPN-ASVDVGDDVLLRCQVEG 184
Query: 116 VPTPDFSWYKDGSLLR 131
W
Sbjct: 185 RGLEQAGWILTELEQS 200
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 59.1 bits (143), Expect = 7e-12
Identities = 16/111 (14%), Positives = 38/111 (34%), Gaps = 5/111 (4%)
Query: 33 PGQVIKRYLKDLLYVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFK 92
+ + + L ++ S+ I+ D+ Y C + + S +Q+ V +
Sbjct: 36 EDNSTQWFHNESLISSQASSYFIDAATVNDSGEYRCQTNL--STLSDPVQLEVHIGWLL- 92
Query: 93 DEQQESVAIVVNHPMNISC-SHYGVPTPDFSWYKDGSLLRIQSHYITFFLF 142
Q P+++ C S ++ ++G + H F +
Sbjct: 93 -LQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYFHHNSDFHIP 142
Score = 35.2 bits (81), Expect = 0.003
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 42 KDLLYVTRNGSFVINNIAEKDTNVYTCTVSNAAGS-TSKTIQMNV 85
KD Y N F I KD+ Y C + + +S+T+ + +
Sbjct: 128 KDRKYFHHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITI 172
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 57.7 bits (139), Expect = 2e-11
Identities = 13/91 (14%), Positives = 28/91 (30%), Gaps = 4/91 (4%)
Query: 47 VTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKDEQQESVAIVVNHP 106
+ NG I N+ D+ Y TV + G+ +++ + + +
Sbjct: 57 ILANGDLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDL----RILEMVSKPMIYWECSN 112
Query: 107 MNISCSHYGVPTPDFSWYKDGSLLRIQSHYI 137
++C + Y+ LR
Sbjct: 113 ATLTCEVLEGTDVELKLYQGKEHLRSLRQKT 143
Score = 30.7 bits (69), Expect = 0.12
Identities = 4/39 (10%), Positives = 10/39 (25%)
Query: 47 VTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNV 85
+ ++ + C N S+ +N
Sbjct: 136 LRSLRQKTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNC 174
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 57.5 bits (139), Expect = 2e-11
Identities = 18/110 (16%), Positives = 33/110 (30%), Gaps = 5/110 (4%)
Query: 33 PGQVIKRYLKDLLYVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFK 92
I+ + L T D+ YTC S S + + VL
Sbjct: 33 ESDSIQWFHNGNLIPTHTQPSYRFKANNNDSGEYTCQTGQ--TSLSDPVHLTVLFEWLVL 90
Query: 93 DEQQESVAIVVNHPMNISC-SHYGVPTPDFSWYKDGSLLRIQSHYITFFL 141
Q + + + C S P +++++G + TF +
Sbjct: 91 --QTPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSHLDPTFSI 138
Score = 38.6 bits (90), Expect = 2e-04
Identities = 9/59 (15%), Positives = 22/59 (37%), Gaps = 4/59 (6%)
Query: 31 RNPGQVIKRYLKD---LLYVTRNGSFVINNIAEKDTNVYTCTVSNAAGS-TSKTIQMNV 85
++ V + ++ + + +F I + Y CT + +SK + + V
Sbjct: 111 KDKPLVKVTFFQNGKSQKFSHLDPTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITV 169
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 56.4 bits (136), Expect = 6e-11
Identities = 19/111 (17%), Positives = 34/111 (30%), Gaps = 5/111 (4%)
Query: 33 PGQVIKRYLKDLLYVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFK 92
K + L N S I N +D+ Y C + S+ + + V
Sbjct: 33 EVSSTKWFHNGSLSEETNSSLNIVNAKFEDSGEYKCQHQQ--VNESEPVYLEVFSDWLLL 90
Query: 93 DEQQESVAIVVNHPMNISC-SHYGVPTPDFSWYKDGSLLRIQSHYITFFLF 142
Q + ++ P+ + C +YKDG L+ +
Sbjct: 91 --QASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYENHNISIT 139
Score = 44.1 bits (104), Expect = 2e-06
Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 4/63 (6%)
Query: 31 RNPGQVIKRYLKD---LLYVTRNGSFVINNIAEKDTNVYTCTVSNAAGS-TSKTIQMNVL 86
RN Y KD L Y N + I N +D+ Y CT S+ + + V+
Sbjct: 111 RNWDVYKVIYYKDGEALKYWYENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVI 170
Query: 87 VPP 89
P
Sbjct: 171 KAP 173
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 56.8 bits (137), Expect = 6e-11
Identities = 17/111 (15%), Positives = 39/111 (35%), Gaps = 5/111 (4%)
Query: 33 PGQVIKRYLKDLLYVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFK 92
Q + + + L ++ S+ I+ D+ Y C + S +Q+ V +
Sbjct: 36 EDQSTQWFHNESLISSQASSYFIDAATVDDSGEYRCQTQL--STLSDPVQLEVHIGWLLL 93
Query: 93 DEQQESVAIVVNHPMNISC-SHYGVPTPDFSWYKDGSLLRIQSHYITFFLF 142
Q P+++ C S ++ ++G + H F++
Sbjct: 94 --QAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYFHHNSDFYIP 142
Score = 37.2 bits (86), Expect = 7e-04
Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 4/63 (6%)
Query: 31 RNPGQVIKRYLKD---LLYVTRNGSFVINNIAEKDTNVYTCTVSNAAGS-TSKTIQMNVL 86
+N YL++ Y N F I KD+ Y C + + +S+T+Q+ +
Sbjct: 114 KNTALHKVTYLQNGKGRKYFHHNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITIT 173
Query: 87 VPP 89
Sbjct: 174 QGL 176
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 57.6 bits (138), Expect = 8e-11
Identities = 17/117 (14%), Positives = 33/117 (28%), Gaps = 8/117 (6%)
Query: 29 QSRNPGQVIKRYLKDLLYVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVP 88
Q R+ + I L + DT YTC + N + + V+
Sbjct: 57 QDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQK 116
Query: 89 P---FFKDEQQESVAIVVNHPMNISCSHY-----GVPTPDFSWYKDGSLLRIQSHYI 137
+ + I+C + P +WY ++ ++ I
Sbjct: 117 DSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVI 173
Score = 54.1 bits (129), Expect = 1e-09
Identities = 16/100 (16%), Positives = 27/100 (27%), Gaps = 15/100 (15%)
Query: 46 YVTRNGSFVINNIAEKDTNVYTCTVS----NAAGSTSKTIQMNVL------VPPFFKDEQ 95
+ + + YTC V+ ++T+ + V+ VPP
Sbjct: 172 VIPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPN 231
Query: 96 QESVAIV-VNHPMNISC----SHYGVPTPDFSWYKDGSLL 130
V + I C S + W DG
Sbjct: 232 DHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKP 271
Score = 41.4 bits (96), Expect = 4e-05
Identities = 9/38 (23%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 54 VINNIAEKDTNV-YTCTVSNAAGSTSKTIQMNVLVPPF 90
I + +D Y C +A G +K ++ VP
Sbjct: 299 SIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQKVPAP 336
Score = 27.5 bits (60), Expect = 1.7
Identities = 4/27 (14%), Positives = 7/27 (25%)
Query: 102 VVNHPMNISCSHYGVPTPDFSWYKDGS 128
+ H + + S WY
Sbjct: 31 LFEHFLKFNYSTAHSAGLTLIWYWTRQ 57
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 56.0 bits (134), Expect = 2e-10
Identities = 22/98 (22%), Positives = 36/98 (36%), Gaps = 5/98 (5%)
Query: 42 KDLLYVTRNGSFVINNIAEKDTNVYTCTV-SNAAGSTSKTIQMNVLVPP---FFKDEQQE 97
+ G V+ D Y C V + AAG+ T ++NV P +
Sbjct: 68 SPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGT 127
Query: 98 SVAIVVNHPMNISC-SHYGVPTPDFSWYKDGSLLRIQS 134
+ + +C S G P P +WY++G L +
Sbjct: 128 LSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPV 165
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 56.5 bits (136), Expect = 2e-10
Identities = 9/118 (7%), Positives = 26/118 (22%), Gaps = 17/118 (14%)
Query: 34 GQVIK---RYLKDLLYVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTS------------ 78
+ R ++ ++ D +Y+C V++ G S
Sbjct: 40 YVSTEDSPRL--EVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRL 97
Query: 79 KTIQMNVLVPPFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHY 136
+ P + + + ++ + + Y
Sbjct: 98 LALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKY 155
Score = 53.5 bits (128), Expect = 2e-09
Identities = 16/124 (12%), Positives = 38/124 (30%), Gaps = 21/124 (16%)
Query: 34 GQVIKRYLKDLLYVTRNG---SFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPF 90
+ I K +++ RN + + ++D YT + + + T+ + V
Sbjct: 146 EKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKK 205
Query: 91 FKDEQQE-----------------SVAIVVNHPMNISCSHYGVPTP-DFSWYKDGSLLRI 132
+ E + S + + + C + WYKD + +
Sbjct: 206 LQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISV 265
Query: 133 QSHY 136
+
Sbjct: 266 DEKH 269
Score = 45.8 bits (108), Expect = 1e-06
Identities = 13/51 (25%), Positives = 17/51 (33%), Gaps = 2/51 (3%)
Query: 87 VPPFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHYI 137
+ PF K E +V +N C P +FSW KD
Sbjct: 2 IDPFTK-EVVVNVDDDGVISLNFEC-DKMTPKSEFSWSKDYVSTEDSPRLE 50
Score = 39.6 bits (92), Expect = 1e-04
Identities = 5/38 (13%), Positives = 15/38 (39%)
Query: 48 TRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNV 85
+ +I ++KD +Y + + G +++
Sbjct: 273 DGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD 310
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 54.5 bits (131), Expect = 4e-10
Identities = 13/91 (14%), Positives = 26/91 (28%), Gaps = 7/91 (7%)
Query: 47 VTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKDEQQESVAIVVNHP 106
NG+ I N++++D Y + + I M V + +
Sbjct: 65 DKTNGALRIYNVSKEDRGDYYMRMLH-ETEDQWKITMEVYEMV------SKPMIYWECSN 117
Query: 107 MNISCSHYGVPTPDFSWYKDGSLLRIQSHYI 137
++C + Y+ LR
Sbjct: 118 ATLTCEVLEGTDVELKLYQGKEHLRSLRQKT 148
Score = 29.9 bits (67), Expect = 0.24
Identities = 4/32 (12%), Positives = 9/32 (28%)
Query: 54 VINNIAEKDTNVYTCTVSNAAGSTSKTIQMNV 85
++ + C N S+ +N
Sbjct: 148 TMSYQWTNLRAPFKCKAVNRVSQESEMEVVNC 179
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 52.1 bits (125), Expect = 7e-10
Identities = 11/58 (18%), Positives = 20/58 (34%)
Query: 32 NPGQVIKRYLKDLLYVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPP 89
N + I + + +G ++N + YT N G K I + + P
Sbjct: 43 NESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGWP 100
Score = 42.0 bits (99), Expect = 4e-06
Identities = 11/56 (19%), Positives = 19/56 (33%), Gaps = 4/56 (7%)
Query: 85 VLVPPFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHYITFF 140
V P + +H I + G P P W+ +G++L + T
Sbjct: 1 VHFAPTITFLES----PTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKI 52
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A
{Homo sapiens}
Length = 207
Score = 53.8 bits (129), Expect = 8e-10
Identities = 13/105 (12%), Positives = 29/105 (27%), Gaps = 22/105 (20%)
Query: 52 SFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLV-------------------PPFFK 92
+ + ++D YT + + + T+ + V P F
Sbjct: 62 EMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFV 121
Query: 93 DEQQESVAIVVNHPMNISCSHYGVPTP-DFSWYKDGSLLRIQSHY 136
+ V + + C + WYKD + + +
Sbjct: 122 EYLSWEVT--GECNVLLKCKVANIKKETHIVWYKDEREISVDEKH 164
Score = 36.8 bits (85), Expect = 0.001
Identities = 5/33 (15%), Positives = 14/33 (42%)
Query: 50 NGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQ 82
+ +I ++KD +Y + + G ++
Sbjct: 170 ICTLLITEFSKKDAGIYEVILKDDRGKDKSRLK 202
Score = 32.6 bits (74), Expect = 0.024
Identities = 7/51 (13%), Positives = 16/51 (31%), Gaps = 3/51 (5%)
Query: 87 VPPFFKDEQQESVAIVVNHPMNIS-CSHYGVPTPDFSWYKDGSLLRIQSHY 136
+ PF K E +V I+ + + ++ + + Y
Sbjct: 2 IDPFTKSEL--AVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKY 50
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 53.4 bits (128), Expect = 8e-10
Identities = 9/95 (9%), Positives = 27/95 (28%), Gaps = 9/95 (9%)
Query: 45 LYVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKDEQQESVAIVVN 104
L+ N +I N+ +D++ Y C V + + + + ++
Sbjct: 62 LWDQGNFPLIIKNLKIEDSDTYICEVEDQKE-EVQLLVFGLTANS--------DTHLLQG 112
Query: 105 HPMNISCSHYGVPTPDFSWYKDGSLLRIQSHYITF 139
+ ++ +P ++
Sbjct: 113 QSLTLTLESPPGSSPSVQCRSPRGKNIQGGKTLSV 147
Score = 43.0 bits (101), Expect = 5e-06
Identities = 8/40 (20%), Positives = 17/40 (42%)
Query: 47 VTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVL 86
+ + ++ + +D+ +TCTV I + VL
Sbjct: 139 IQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVL 178
Score = 29.9 bits (67), Expect = 0.18
Identities = 4/40 (10%), Positives = 14/40 (35%)
Query: 96 QESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSH 135
++ V + ++C+ + F W + + +
Sbjct: 2 KKVVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQ 41
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 53.9 bits (129), Expect = 8e-10
Identities = 16/92 (17%), Positives = 34/92 (36%), Gaps = 2/92 (2%)
Query: 47 VTRNGSFVINNIAEKDTNVYTCTVSNAAGST-SKTIQMNVLVPPFFKDEQQESVAIVVNH 105
+ NGS + I KD VYT +++ T++ +V P Q + +
Sbjct: 67 IYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELD 126
Query: 106 PMNISCSHYGVPTPDFSWYKDGSLLRIQSHYI 137
+ ++C + + W + L++
Sbjct: 127 SVTLTCLSNDIG-ANIQWLFNSQSLQLTERMT 157
Score = 48.1 bits (114), Expect = 1e-07
Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 50 NGSFVINNIAEKDTNVYTCTVSNAAGS-TSKTIQMNVLVPPFF 91
N I+ I +D Y C +SN S +I+++++ P
Sbjct: 162 NSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFDPHH 204
Score = 25.0 bits (54), Expect = 9.9
Identities = 5/41 (12%), Positives = 14/41 (34%), Gaps = 3/41 (7%)
Query: 101 IVVNHPMNISCSHYGVPTPDFSWYKDGSLL---RIQSHYIT 138
+ ++ + + + + F+WYK + I
Sbjct: 11 VAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPN 51
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 54.1 bits (129), Expect = 1e-09
Identities = 17/126 (13%), Positives = 39/126 (30%), Gaps = 11/126 (8%)
Query: 17 PMHSRYNYTNLPQSRNPGQVIKRYLKDLLYVTRNGSFVINNIAEKDTNVYTCTVSNAAGS 76
+ Y+ ++P R R +GS ++ ++ + D +YTC + S
Sbjct: 54 YVLFYYSNLSVPTGRFQN----RSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNES 109
Query: 77 TSKTIQMNVLVPPFFKDEQQESVAIVVNHPMNISCSHYGVPTPD---FSWYKDGSLLRIQ 133
+ + V P + + V + CS +W +
Sbjct: 110 MVMKKPVELWVLPEE----PRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEE 165
Query: 134 SHYITF 139
+++
Sbjct: 166 ETVLSY 171
Score = 47.9 bits (113), Expect = 2e-07
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 48 TRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPF 90
+GS + + E D +YTC++ + KTI ++V+ F
Sbjct: 198 RNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQDEF 240
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor
tyrosine kinase, 3D-domain swapping, transferase; 1.90A
{Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 51.7 bits (124), Expect = 1e-09
Identities = 15/56 (26%), Positives = 22/56 (39%)
Query: 48 TRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKDEQQESVAIVV 103
G + N + YT N G+ ++TI + L PF DE + I V
Sbjct: 62 ISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFPVDEVSPTPPITV 117
Score = 45.6 bits (108), Expect = 3e-07
Identities = 11/60 (18%), Positives = 18/60 (30%), Gaps = 4/60 (6%)
Query: 81 IQMNVLVPPFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHYITFF 140
+ + V PP ++ + I G P P W +G LR +
Sbjct: 1 VALTVYYPPRVVSLEEPELR----LEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEY 56
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 54.4 bits (130), Expect = 1e-09
Identities = 9/99 (9%), Positives = 27/99 (27%), Gaps = 9/99 (9%)
Query: 41 LKDLLYVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKDEQQESVA 100
+ L+ N +I N+ +D++ Y C V + + +
Sbjct: 57 SRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQ-LLVFGLTANS--------DTH 107
Query: 101 IVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHYITF 139
++ + ++ +P ++
Sbjct: 108 LLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGKTLSV 146
Score = 51.3 bits (122), Expect = 1e-08
Identities = 10/84 (11%), Positives = 29/84 (34%), Gaps = 3/84 (3%)
Query: 47 VTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNV--LVPPFFKDEQQESVAIVVN 104
+ + ++ + +D+ +TCTV I + V ++E + +
Sbjct: 138 IQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFS 197
Query: 105 HPMNISCSHYGVPTPDFSWYKDGS 128
P+ + + + W + +
Sbjct: 198 FPLAFTVEKLT-GSGELWWQAERA 220
Score = 48.3 bits (114), Expect = 2e-07
Identities = 8/91 (8%), Positives = 24/91 (26%), Gaps = 16/91 (17%)
Query: 47 VTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKDEQQESVAIVVNHP 106
+ + + + T + G + + + V+
Sbjct: 253 LPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVMR--------------ATQLQ 298
Query: 107 MNISCSHYGVPTPD--FSWYKDGSLLRIQSH 135
N++C +G +P S + ++
Sbjct: 299 KNLTCEVWGPTSPKLMLSLKLENKEAKVSKR 329
Score = 29.8 bits (66), Expect = 0.34
Identities = 5/58 (8%), Positives = 20/58 (34%), Gaps = 3/58 (5%)
Query: 32 NPGQVIKRYLKDLLYVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPP 89
+++ + + + + ++ C +S++ ++ N+ V P
Sbjct: 309 TSPKLMLSLKLENKEAKVSKREKAVWVLNPEAGMWQCLLSDSG---QVLLESNIKVLP 363
Score = 28.6 bits (63), Expect = 0.76
Identities = 4/40 (10%), Positives = 14/40 (35%)
Query: 96 QESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSH 135
++ V + ++C+ + F W + + +
Sbjct: 1 KKVVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQ 40
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in
U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 51.3 bits (123), Expect = 2e-09
Identities = 11/45 (24%), Positives = 15/45 (33%)
Query: 47 VTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFF 91
NG I DT YTC S +G + + + V
Sbjct: 58 QLENGVLQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVP 102
Score = 38.6 bits (90), Expect = 9e-05
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Query: 88 PPFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHYITFF 140
PP + + + + V+ +SC G P P W KDG L+ Q I
Sbjct: 8 PPVIR-QGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQL 59
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 53.2 bits (127), Expect = 2e-09
Identities = 15/90 (16%), Positives = 27/90 (30%), Gaps = 5/90 (5%)
Query: 49 RNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKDEQQESVAIVVNHPMN 108
+ ++ T YTC+ SN S +I + V P +
Sbjct: 55 KKNEWIQEKAEATRTGTYTCSNSNGLTS---SIYVFVRDPAKLFLVGLPLFGK-EDSDAL 110
Query: 109 ISCSHYGVPTPDFSWYK-DGSLLRIQSHYI 137
+ C +S + DG L ++
Sbjct: 111 VRCPLTDPQVSQYSLIECDGKSLPTDLTFV 140
Score = 46.3 bits (109), Expect = 6e-07
Identities = 11/86 (12%), Positives = 19/86 (22%), Gaps = 7/86 (8%)
Query: 49 RNGSFVINNIAEKDTNVYTCTVSNAAGS-TSKTIQMNVLV----PPFFKDEQQESVAIVV 103
+ G + N C S + V P + +
Sbjct: 144 KAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLK-K 202
Query: 104 NHPMNISCSHYGVPTP-DFSWYKDGS 128
+ C+ V T + W K
Sbjct: 203 GDTFTVVCTIKDVSTSVNSMWLKMNP 228
Score = 45.9 bits (108), Expect = 9e-07
Identities = 12/70 (17%), Positives = 26/70 (37%)
Query: 17 PMHSRYNYTNLPQSRNPGQVIKRYLKDLLYVTRNGSFVINNIAEKDTNVYTCTVSNAAGS 76
++S + N + + R + I++ D+ V+ C +N GS
Sbjct: 218 SVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGS 277
Query: 77 TSKTIQMNVL 86
+ T + V+
Sbjct: 278 ANVTTTLKVV 287
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 51.4 bits (123), Expect = 3e-09
Identities = 14/82 (17%), Positives = 30/82 (36%), Gaps = 1/82 (1%)
Query: 59 AEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKDEQQESVAIVVNHPMNISCSHYGVPT 118
+ + + V N + + V P+F + + +V C G P
Sbjct: 12 SSPTSPINANKVENEDAFLEEVAEEKPHVKPYF-TKTILDMEVVEGSAARFDCKVEGYPD 70
Query: 119 PDFSWYKDGSLLRIQSHYITFF 140
P+ W+KD + ++ H+ +
Sbjct: 71 PEVMWFKDDNPVKESRHFQIDY 92
Score = 41.0 bits (96), Expect = 2e-05
Identities = 13/72 (18%), Positives = 23/72 (31%), Gaps = 2/72 (2%)
Query: 34 GQVIKRYLKDLLYVTRNG--SFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFF 91
+K + G S I+ + D YTC N+ G + T ++ V
Sbjct: 79 DNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVETMGKE 138
Query: 92 KDEQQESVAIVV 103
+ + E
Sbjct: 139 GEGEGEGEEDEE 150
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 53.1 bits (126), Expect = 3e-09
Identities = 17/101 (16%), Positives = 26/101 (25%), Gaps = 10/101 (9%)
Query: 48 TRNGSF--VINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKDEQQESVAIVVNH 105
T F VIN + D Y C + + S K + VL P + ++ +
Sbjct: 180 TGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVTFHC 239
Query: 106 PMNIS--------CSHYGVPTPDFSWYKDGSLLRIQSHYIT 138
+ C D G I
Sbjct: 240 ALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRIL 280
Score = 43.4 bits (101), Expect = 8e-06
Identities = 13/90 (14%), Positives = 25/90 (27%), Gaps = 4/90 (4%)
Query: 49 RNGSF--VINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKDEQQESVAI--VVN 104
NG+F ++N + +D Y C + + + P K + + +
Sbjct: 402 GNGTFTVILNQLTSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLK 461
Query: 105 HPMNISCSHYGVPTPDFSWYKDGSLLRIQS 134
P + C W G
Sbjct: 462 VPCHFPCKFSSYEKYWCKWNNTGCQALPSQ 491
Score = 42.3 bits (98), Expect = 2e-05
Identities = 20/112 (17%), Positives = 38/112 (33%), Gaps = 4/112 (3%)
Query: 25 TNLPQSRNPGQVIKRYLKDLLYVTRNGSFV--INNIAEKDTNVYTCTVSNAAGSTSKTIQ 82
L S +L NG+FV I +++ D+ Y C + + S +
Sbjct: 47 ITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVS 106
Query: 83 MNVLVPPFFKDEQQESVAIVVNHPMNISCSHYGVPTPD-FSWYKDGSLLRIQ 133
+ V P ++ + + + + I+C S YK L +
Sbjct: 107 LEVSQGPGLLNDTKV-YTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVL 157
Score = 38.4 bits (88), Expect = 4e-04
Identities = 9/79 (11%), Positives = 21/79 (26%), Gaps = 3/79 (3%)
Query: 49 RNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVL---VPPFFKDEQQESVAIVVNH 105
+ S VI + ++D Y C + + V V
Sbjct: 288 GSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGS 347
Query: 106 PMNISCSHYGVPTPDFSWY 124
+ + C + + ++
Sbjct: 348 SVAVLCPYNRKESKSIKYW 366
Score = 32.7 bits (73), Expect = 0.040
Identities = 8/42 (19%), Positives = 13/42 (30%), Gaps = 1/42 (2%)
Query: 49 RNGSFVINNIAEKDTNVYTCTVSNA-AGSTSKTIQMNVLVPP 89
R S +N + D Y C V + + + V
Sbjct: 507 RLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEERK 548
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 50.8 bits (121), Expect = 9e-09
Identities = 14/78 (17%), Positives = 27/78 (34%), Gaps = 2/78 (2%)
Query: 50 NGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKDEQQESVAIVVNHPMNI 109
F I ++ +D+ Y C V A K + + V + + + + +
Sbjct: 66 KALFHIPSVQVRDSGQYRCLVICGAAWDYKYLTVK--VKASYMRIDTRILEVPGTGEVQL 123
Query: 110 SCSHYGVPTPDFSWYKDG 127
+C G P + SW
Sbjct: 124 TCQARGYPLAEVSWQNVS 141
Score = 31.9 bits (72), Expect = 0.040
Identities = 7/50 (14%), Positives = 16/50 (32%), Gaps = 5/50 (10%)
Query: 47 VTRNGSFVIN---NIAEKDTNVYTCTVSNAAGSTSKT--IQMNVLVPPFF 91
T G + + + + + ++C NA + I + P
Sbjct: 150 RTPEGLYQVTSVLRLKPQPSRNFSCMFWNAHMKELTSAIIDPLSRMEPKV 199
Score = 25.4 bits (55), Expect = 8.2
Identities = 5/43 (11%), Positives = 11/43 (25%), Gaps = 7/43 (16%)
Query: 85 VLVPPFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDG 127
V P E + V +++ C + +
Sbjct: 5 VTAPK-------EVYTVDVGSSVSLECDFDRRECTELEGIRAS 40
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 51.6 bits (123), Expect = 1e-08
Identities = 17/110 (15%), Positives = 39/110 (35%), Gaps = 7/110 (6%)
Query: 33 PGQVIKRYLKDLLYVTRNGSFVINNIAEKDTNVYTCTVSNAAGS-TSKTIQMNVLVPPFF 91
Q + + T + + N+ DT Y CT +++ G T + ++ + VP
Sbjct: 33 MSQEPPQEMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPT 92
Query: 92 K-----DEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHY 136
D ++ + + + I C P + ++ + + Y
Sbjct: 93 VGFLPNDAEELFIFLTEITEITIPC-RVTDPQLVVTLHEKKGDVALPVPY 141
Score = 46.6 bits (110), Expect = 5e-07
Identities = 7/68 (10%), Positives = 15/68 (22%), Gaps = 2/68 (2%)
Query: 62 DTNVYTCTVSNAAGS--TSKTIQMNVLVPPFFKDEQQESVAIVVNHPMNISCSHYGVPTP 119
+ Y C + + + V + + + C G
Sbjct: 152 EDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVV 211
Query: 120 DFSWYKDG 127
+F W
Sbjct: 212 NFEWTYPR 219
Score = 42.4 bits (99), Expect = 1e-05
Identities = 8/50 (16%), Positives = 15/50 (30%), Gaps = 2/50 (4%)
Query: 46 YVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLV--PPFFKD 93
I + +D+ YTC V+ + +N+ V
Sbjct: 237 PYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITVVESGHHHH 286
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Length = 171
Score = 50.3 bits (120), Expect = 1e-08
Identities = 17/112 (15%), Positives = 33/112 (29%), Gaps = 9/112 (8%)
Query: 21 RYNYTNLPQSRNPGQVIKRYLKDLLY-VTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSK 79
+ + + N K+ +Y T +GS I N+ D + Y N +
Sbjct: 29 KKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNITD--TM 86
Query: 80 TIQMNVLVPPFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLR 131
+ VL + + ++C + Y+ LR
Sbjct: 87 KFFLYVLEMV------SKPMIYWECSNATLTCEVLEGTDVELKLYQGKEHLR 132
Score = 30.3 bits (68), Expect = 0.16
Identities = 4/32 (12%), Positives = 9/32 (28%)
Query: 54 VINNIAEKDTNVYTCTVSNAAGSTSKTIQMNV 85
++ + C N S+ +N
Sbjct: 138 TMSYQWTNLRAPFKCKAVNRVSQESEMEVVNC 169
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP:
b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 49.2 bits (117), Expect = 1e-08
Identities = 11/43 (25%), Positives = 17/43 (39%)
Query: 48 TRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPF 90
R+G +N + YT +N G S +I + PF
Sbjct: 60 VRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNPF 102
Score = 35.7 bits (82), Expect = 0.001
Identities = 16/54 (29%), Positives = 18/54 (33%), Gaps = 4/54 (7%)
Query: 88 PPFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHYITFFL 141
P V H I S G P P W +GS+L S T FL
Sbjct: 3 MPASVQLHTA----VEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFL 52
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 50.2 bits (120), Expect = 2e-08
Identities = 15/66 (22%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 71 SNAAGSTSKTIQMNVLVPPFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLL 130
+ AA S++ + + + P + +V + +NI+C + P+ SW++DG LL
Sbjct: 2 TYAAASSALVPRGSHMYAPKLQGPV--AVYTWEGNQVNITCEVFAYPSATISWFRDGQLL 59
Query: 131 RIQSHY 136
++
Sbjct: 60 PSSNYS 65
Score = 44.4 bits (105), Expect = 2e-06
Identities = 10/62 (16%), Positives = 17/62 (27%), Gaps = 5/62 (8%)
Query: 50 NGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPP-----FFKDEQQESVAIVVN 104
+ +E D Y CT N G S + P + + + +
Sbjct: 75 ASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADTPSSPSIDQVEPYSSTAQVQFD 134
Query: 105 HP 106
P
Sbjct: 135 EP 136
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 48.3 bits (115), Expect = 2e-08
Identities = 13/41 (31%), Positives = 17/41 (41%)
Query: 47 VTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLV 87
+ NG I N+ D Y CT SN T ++V V
Sbjct: 58 MDFNGILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHVQV 98
Score = 35.2 bits (81), Expect = 0.001
Identities = 7/41 (17%), Positives = 13/41 (31%), Gaps = 1/41 (2%)
Query: 88 PPFFKDEQQESVAIVVNHPMNISCS-HYGVPTPDFSWYKDG 127
P E+Q S ++ + C+ P W +
Sbjct: 9 PIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLH 49
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 49.6 bits (118), Expect = 2e-08
Identities = 15/81 (18%), Positives = 25/81 (30%), Gaps = 5/81 (6%)
Query: 48 TRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKDEQQESVAIVVNHPM 107
++ Y+C T+ + + PP K + S I
Sbjct: 46 LPGQKTEFKVDSDDQWGEYSCVFLPEPMGTA---NIQLHGPPRVK-AVKSSEHINEGETA 101
Query: 108 NISCSHYGVP-TPDFSWYKDG 127
+ C VP D++WYK
Sbjct: 102 MLVCKSESVPPVTDWAWYKIT 122
Score = 38.9 bits (90), Expect = 2e-04
Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 49 RNGSFVINNI-AEKDTNVYTCTVSNAAGSTSKTIQMNV 85
I N+ E D Y C +++ GS I + V
Sbjct: 144 GRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 181
Score = 26.5 bits (58), Expect = 2.6
Identities = 7/30 (23%), Positives = 12/30 (40%), Gaps = 2/30 (6%)
Query: 103 VNHPMNISCSHYGVPTP--DFSWYKDGSLL 130
+ + ++CS T W K G +L
Sbjct: 12 LGSKILLTCSLNDSATEVTGHRWLKGGVVL 41
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 49.6 bits (118), Expect = 2e-08
Identities = 16/110 (14%), Positives = 36/110 (32%), Gaps = 5/110 (4%)
Query: 30 SRNPGQVIK-RYLKDLLYVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVP 88
+++P + L T++ S ++N+ +DT Y +S + + + +L
Sbjct: 48 TKSPEIHVTNPKQGKRLNFTQSYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQ 107
Query: 89 PFFKDEQQESVAIVVNHPMNIS---CSHYGVPTPDFSWYKDGSLLRIQSH 135
+ + N + F W G+ L Q +
Sbjct: 108 L-RNIQVTNHSQLFQNMTCELHLTCSVEDADDNVSFRWEALGNTLSSQPN 156
Score = 34.2 bits (78), Expect = 0.007
Identities = 8/33 (24%), Positives = 12/33 (36%)
Query: 54 VINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVL 86
V + YTC NA + S ++ L
Sbjct: 159 VSWDPRISSEQDYTCIAENAVSNLSFSVSAQKL 191
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 47.4 bits (113), Expect = 4e-08
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 47 VTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVL 86
+ G+ I N+ DT YTC ++++G TS + ++V
Sbjct: 58 IQEQGTLQIKNLRISDTGTYTCVATSSSGETSWSAVLDVT 97
Score = 35.8 bits (83), Expect = 7e-04
Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Query: 88 PPFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHYIT 138
PP + + + V+ + C G P P SW K+G + T
Sbjct: 8 PPIIL-QGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRAT 57
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 47.8 bits (114), Expect = 4e-08
Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 3/64 (4%)
Query: 71 SNAAGSTSKTIQ-MNVLVPPFFK-DEQQESVAIV-VNHPMNISCSHYGVPTPDFSWYKDG 127
S ++G+ ++ + + PP + I V +N+ G P P W K G
Sbjct: 3 SGSSGTLAQPVTIREIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGG 62
Query: 128 SLLR 131
+ L
Sbjct: 63 APLD 66
Score = 46.6 bits (111), Expect = 1e-07
Identities = 8/41 (19%), Positives = 16/41 (39%)
Query: 49 RNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPP 89
+ F + A D+ Y +V + TI++ V+
Sbjct: 77 FDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVVEKA 117
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens}
PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 47.4 bits (113), Expect = 4e-08
Identities = 12/40 (30%), Positives = 15/40 (37%)
Query: 50 NGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPP 89
++ D VY C NAAG + VL PP
Sbjct: 68 EHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAVTVLEPP 107
Score = 38.9 bits (91), Expect = 7e-05
Identities = 14/59 (23%), Positives = 17/59 (28%), Gaps = 1/59 (1%)
Query: 78 SKTIQMNVLVPPFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHY 136
K + PP F V +V + C G P P W K G L
Sbjct: 3 MKASSGDQGSPPCFL-RFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERL 60
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 47.4 bits (113), Expect = 5e-08
Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 34 GQVIK--RYLKDLLYVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPP 89
G+ ++ K L+ S +I + +D +YTC +N AG S ++++ V
Sbjct: 47 GKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKE 104
Score = 37.7 bits (88), Expect = 2e-04
Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Query: 87 VPPFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHYITFF 140
P F + + + + C G+PTPD SW DG +R S +
Sbjct: 8 FRPHFL-QAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLV 60
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 48.6 bits (115), Expect = 6e-08
Identities = 15/107 (14%), Positives = 34/107 (31%), Gaps = 6/107 (5%)
Query: 30 SRNPGQVIKRYLKDLLYVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPP 89
+R P + + + ++ G F I + + C S + + V+V
Sbjct: 44 ARYPEKRFVPDGNRISWDSKKG-FTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGY 102
Query: 90 FFKD---EQQESVAIVVNHPMNISCSHYGVPTPD--FSWYKDGSLLR 131
D + + V + ++C+ F+W S +
Sbjct: 103 RIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQ 149
Score = 45.2 bits (106), Expect = 1e-06
Identities = 8/40 (20%), Positives = 16/40 (40%)
Query: 50 NGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPP 89
+ I+ + D +YTC S+ + + + V P
Sbjct: 170 LSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEDP 209
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 46.7 bits (111), Expect = 8e-08
Identities = 11/41 (26%), Positives = 21/41 (51%)
Query: 46 YVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVL 86
++ S ++ ++ D YTC V N GS + T ++V+
Sbjct: 60 VRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVV 100
Score = 38.6 bits (90), Expect = 8e-05
Identities = 11/64 (17%), Positives = 24/64 (37%), Gaps = 3/64 (4%)
Query: 88 PPFFKDEQQ---ESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHYITFFLFFQ 144
P++ + ++ A+ + + C G P P W K+G + + + + Q
Sbjct: 4 APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQ 63
Query: 145 RLLL 148
L
Sbjct: 64 HWSL 67
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 46.8 bits (111), Expect = 9e-08
Identities = 13/63 (20%), Positives = 22/63 (34%), Gaps = 3/63 (4%)
Query: 75 GSTSKTIQMNVLVPPFFKDEQQESVAIVVNHPMNISCSHYGVPTPDF-SWYKDGSLLRIQ 133
GS+ + + V PP Q + + I C P PD +W ++L
Sbjct: 1 GSSGSSGTLTVNGPPIISSTQTQHA--LHGEKGQIKCFIRSTPPPDRIAWSWKENVLESG 58
Query: 134 SHY 136
+
Sbjct: 59 TSG 61
Score = 40.6 bits (95), Expect = 2e-05
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 51 GSFVINNIAEKDTN-VYTCTVSNAAGSTSKTIQMNV 85
+ I+NI D +Y CT N+ GS ++ I++
Sbjct: 76 STLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKE 111
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 48.7 bits (115), Expect = 9e-08
Identities = 15/104 (14%), Positives = 34/104 (32%), Gaps = 13/104 (12%)
Query: 39 RYLKDLLYVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKDEQQ-- 96
+ K + I VYT V + ++ + +++ D+
Sbjct: 133 SWSKGEDVIDTTQDITIQEFTADKNGVYTVKVWGESEDSAASASTKIMLATMNVDQDVVE 192
Query: 97 -------ESVAIVVNHPMNISCSHYGVP--TPDFSWY--KDGSL 129
+++ +I G+P T ++WY ++G L
Sbjct: 193 SKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQL 236
Score = 43.7 bits (102), Expect = 5e-06
Identities = 10/91 (10%), Positives = 29/91 (31%), Gaps = 10/91 (10%)
Query: 50 NGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLV--PPFFKDEQQESVAIVVNHPM 107
+ + + ++ Y TV + TS ++ ++ + + + +
Sbjct: 51 TATLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDV 110
Query: 108 NISCSHY---GVPTPD-----FSWYKDGSLL 130
+ + G D +SW K ++
Sbjct: 111 ELHATVKFSGGKTPADNYELHYSWSKGEDVI 141
Score = 32.5 bits (73), Expect = 0.032
Identities = 11/52 (21%), Positives = 17/52 (32%), Gaps = 10/52 (19%)
Query: 45 LYVTRNGSFVINNIAEKDTNVYTCTVS----------NAAGSTSKTIQMNVL 86
+T +G + DT + C A STS+ M V+
Sbjct: 252 FSITPDGHLFKESATYDDTAKFWCVAKLYQQIEDETVEVAASTSRKCSMEVV 303
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 46.6 bits (111), Expect = 1e-07
Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
Query: 79 KTIQMNVLVPPFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHYI 137
+ + + V P E+ + + +SC+ G P P W+KD L S +
Sbjct: 1 RQLTVLERVAPTIT-GNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIV 58
Score = 43.5 bits (103), Expect = 2e-06
Identities = 7/40 (17%), Positives = 14/40 (35%)
Query: 50 NGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPP 89
N + I + ++D +YTC + G +
Sbjct: 63 NRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQ 102
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 48.4 bits (114), Expect = 1e-07
Identities = 12/89 (13%), Positives = 31/89 (34%), Gaps = 8/89 (8%)
Query: 50 NGSFVINNIAEKDTNVYTCTVSNAAGST-----SKTIQMNVLV---PPFFKDEQQESVAI 101
+ + ++ +D Y C V+ + T +K++ + V E V +
Sbjct: 89 APTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQV 148
Query: 102 VVNHPMNISCSHYGVPTPDFSWYKDGSLL 130
+ + ++C + +WY +
Sbjct: 149 DEGNDITMTCPCTDCANANVTWYTGPTFF 177
Score = 46.8 bits (110), Expect = 4e-07
Identities = 8/71 (11%), Positives = 16/71 (22%), Gaps = 5/71 (7%)
Query: 17 PMHSRYNYTNLPQSRNPGQVIKRYLKDLLYVTRNGSFVINNIAEKDTNVYTCTVSNAAGS 76
N + ++ R + + VI D C ++ G
Sbjct: 184 TYQPLANKNQFGITWFSSEIAGRA-----SFSGARNLVIRAAKITDAGRVWCELATGQGE 238
Query: 77 TSKTIQMNVLV 87
+L
Sbjct: 239 LDADRSSTILK 249
Score = 26.4 bits (57), Expect = 4.1
Identities = 9/49 (18%), Positives = 15/49 (30%), Gaps = 3/49 (6%)
Query: 95 QQESVAIVVNHPMNISCSHY---GVPTPDFSWYKDGSLLRIQSHYITFF 140
V + + + CS+ P SW K S R + +
Sbjct: 8 THTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNY 56
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 48.2 bits (115), Expect = 2e-07
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 45 LYVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPP 89
+ V +G+ N+ +DT +YTC VSN+ G+T+ + +NV
Sbjct: 391 IAVLSDGTLNFTNVTVQDTGMYTCMVSNSVGNTTASATLNVTGTH 435
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 47.8 bits (114), Expect = 2e-07
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 45 LYVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPP 89
+ V +G+ +++ DT VYTC V+N AG+++ + +NV
Sbjct: 401 ISVLNDGTLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSTAG 445
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 45.8 bits (109), Expect = 2e-07
Identities = 9/40 (22%), Positives = 14/40 (35%)
Query: 50 NGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPP 89
I ++ YT V N GS + + V+ P
Sbjct: 62 GSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKP 101
Score = 37.7 bits (88), Expect = 2e-04
Identities = 6/49 (12%), Positives = 13/49 (26%), Gaps = 1/49 (2%)
Query: 88 PPFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHY 136
P + E + + + G +W K ++ H
Sbjct: 7 GPQII-QFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHM 54
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 47.5 bits (113), Expect = 3e-07
Identities = 9/59 (15%), Positives = 20/59 (33%)
Query: 31 RNPGQVIKRYLKDLLYVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPP 89
+ + + RNG + +D VYTC + + ++++ V
Sbjct: 281 SPSNEQVLSQGSNGSVSVRNGDLFFKKVQVEDGGVYTCYAMGETFNETLSVELKVYNFT 339
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R
3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 47.0 bits (111), Expect = 3e-07
Identities = 23/91 (25%), Positives = 34/91 (37%), Gaps = 3/91 (3%)
Query: 48 TRNGSFVINNIAEKDTNVYTCTV-SNAAGSTSKTIQMNVLVPPFFKDEQQESVAIVVNHP 106
R+ S + + +D YTC + GS S I + VL P E Q+ V +
Sbjct: 75 LRDASLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQK-VQLTGEPV 133
Query: 107 MNISC-SHYGVPTPDFSWYKDGSLLRIQSHY 136
C S G P +W+ D + S
Sbjct: 134 PMARCVSTGGRPPAQITWHSDLGGMPQTSQV 164
Score = 30.8 bits (69), Expect = 0.11
Identities = 9/45 (20%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 47 VTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSK--TIQMNVLVPP 89
VT +++ ++ D TC V + + + T+ + V P
Sbjct: 172 VTVTSLWILVPSSQVDGKQVTCKVEHESFEKPQLLTVSLTVYYPH 216
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 45.5 bits (108), Expect = 3e-07
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 52 SFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFF 91
+ +I ++ +KD YT + N AG T+ +++V P
Sbjct: 74 TLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTARPNQ 113
Score = 42.4 bits (100), Expect = 4e-06
Identities = 10/66 (15%), Positives = 24/66 (36%), Gaps = 1/66 (1%)
Query: 75 GSTSKTIQMNVLVPPFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQS 134
G P F + Q S ++ + + C +P P W ++ +++ +
Sbjct: 2 GHHHHHHSHEHKRAPMFIYKPQ-SKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNT 60
Query: 135 HYITFF 140
I+ +
Sbjct: 61 DRISLY 66
>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain,
integrin, allosteric mobility, cell adhesi immune
system; HET: NAG; 2.10A {Homo sapiens}
Length = 196
Score = 46.6 bits (110), Expect = 4e-07
Identities = 13/90 (14%), Positives = 25/90 (27%), Gaps = 4/90 (4%)
Query: 48 TRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKDEQQESVAIVVNHPM 107
R + + +I E +T C A + + P + V
Sbjct: 49 LRWLARQLVDIREPETQ-PVCFFRCARRTLQARGLIRTFQRPDRVELMPLPPWQPVGENF 107
Query: 108 NISCSHYGV---PTPDFSWYKDGSLLRIQS 134
+SC G + + + L +S
Sbjct: 108 TLSCRVPGAGPRASLTLTLLRGAQELIRRS 137
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 45.2 bits (107), Expect = 4e-07
Identities = 11/53 (20%), Positives = 15/53 (28%), Gaps = 6/53 (11%)
Query: 46 YVTRNGSFVINNI-----AEKDTNVYTCTVSNAAGS-TSKTIQMNVLVPPFFK 92
+ +GS I + D VY C N G S + V
Sbjct: 62 MLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAAAAHHH 114
Score = 39.4 bits (92), Expect = 4e-05
Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 1/50 (2%)
Query: 85 VLVPPFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQS 134
PP + + + P ++C G PTP WYK G +
Sbjct: 6 EDFPPRIVEHPS-DLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDK 54
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF
receptor, cancer, immune system-transfer complex; HET:
NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 45.1 bits (106), Expect = 5e-07
Identities = 9/42 (21%), Positives = 17/42 (40%)
Query: 49 RNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPF 90
+ I+ + D +YTC S+ + + + V PF
Sbjct: 72 FLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPF 113
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 45.9 bits (109), Expect = 9e-07
Identities = 11/52 (21%), Positives = 21/52 (40%)
Query: 34 GQVIKRYLKDLLYVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNV 85
++ L V +G+ + +D Y C +NA G+ S ++V
Sbjct: 424 KHLVSAKSNGRLTVFPDGTLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHV 475
Score = 26.6 bits (59), Expect = 3.6
Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Query: 88 PPFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKD-GSLLRIQSH 135
+D + + V + H + C G P P W L+ +S+
Sbjct: 384 RARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSN 432
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 45.0 bits (106), Expect = 1e-06
Identities = 18/78 (23%), Positives = 31/78 (39%), Gaps = 2/78 (2%)
Query: 50 NGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKDEQQESVAIVVNHPMNI 109
N + I ++ +D VY C +S G+ K I + V P +++ V V +
Sbjct: 79 NAALQITDVKLQDAGVYRCMISYG-GADYKRITVKVNAPYNKINQRI-LVVDPVTSEHEL 136
Query: 110 SCSHYGVPTPDFSWYKDG 127
+C G P + W
Sbjct: 137 TCQAEGYPKAEVIWTSSD 154
Score = 38.1 bits (88), Expect = 4e-04
Identities = 8/64 (12%), Positives = 17/64 (26%), Gaps = 3/64 (4%)
Query: 31 RNPGQVIKRYLKDLLYVTRNGSFVIN---NIAEKDTNVYTCTVSNAAGSTSKTIQMNVLV 87
+ QV+ F + I ++ CT + T ++ +
Sbjct: 152 SSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIPE 211
Query: 88 PPFF 91
P
Sbjct: 212 LPLA 215
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 43.2 bits (102), Expect = 2e-06
Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 5/60 (8%)
Query: 75 GSTSKTIQMNVLVPPFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQS 134
GS+ + L + E A+ + ++C P+P W KDG L +
Sbjct: 1 GSSGSS----GLEEVQLV-VEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPP 55
Score = 42.8 bits (101), Expect = 2e-06
Identities = 9/52 (17%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 41 LKD--LLYVTRNGSFVINNIAEKDTNVYTCTVSNAAGS--TSKTIQMNVLVP 88
+KD L + + ++ I +D Y+C ++++ S+ + ++++ P
Sbjct: 45 MKDGVPLPLPPSPVLILPEIGPQDQGTYSCVATHSSHGPQESRAVSISIIEP 96
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 42.7 bits (101), Expect = 2e-06
Identities = 9/34 (26%), Positives = 22/34 (64%)
Query: 52 SFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNV 85
+ +I ++ ++D +YT ++ N GS S T+ +++
Sbjct: 64 TLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHI 97
Score = 39.6 bits (93), Expect = 3e-05
Identities = 11/50 (22%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 87 VPPFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHY 136
+PP + ++I + ++C+ G PTP+ +W G + Q
Sbjct: 4 IPPKIE-ALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQG 52
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily,
immune system; HET: NAG; 3.00A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Length = 201
Score = 44.2 bits (104), Expect = 2e-06
Identities = 21/85 (24%), Positives = 30/85 (35%), Gaps = 4/85 (4%)
Query: 50 NGSFVINNIAEKDTNVYTCTVSNAAGSTSK---TIQMNVLVPPFFKDEQQESVAIVVNHP 106
N S VI + D Y C V K ++ + V F I ++
Sbjct: 64 NLSIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSNI 123
Query: 107 MNISC-SHYGVPTPDFSWYKDGSLL 130
I C + G P P SW ++G L
Sbjct: 124 RRIICSTSGGFPEPHLSWLENGEEL 148
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 42.7 bits (100), Expect = 3e-06
Identities = 7/60 (11%), Positives = 15/60 (25%)
Query: 30 SRNPGQVIKRYLKDLLYVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPP 89
S+ + + + I + Y C V+ S + + V
Sbjct: 54 SKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHEST 113
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 42.3 bits (100), Expect = 4e-06
Identities = 11/55 (20%), Positives = 22/55 (40%), Gaps = 5/55 (9%)
Query: 34 GQVIK---RYLKDLLYVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNV 85
GQV+ R+ + +F I+++ D Y+ V N+ G + +
Sbjct: 52 GQVLSTSARH--QVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTI 104
Score = 35.8 bits (83), Expect = 9e-04
Identities = 9/52 (17%), Positives = 18/52 (34%), Gaps = 1/52 (1%)
Query: 85 VLVPPFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHY 136
+ + S+ + SC G P P +W + G +L + +
Sbjct: 11 TTLAARIL-TKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARH 61
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A*
1ow0_C*
Length = 218
Score = 43.7 bits (103), Expect = 4e-06
Identities = 15/87 (17%), Positives = 32/87 (36%), Gaps = 3/87 (3%)
Query: 52 SFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKD---EQQESVAIVVNHPMN 108
FVI+++ Y C + + ++V + + ++ ++
Sbjct: 65 EFVIDHMDANKAGRYQCQYRIGHYRFRYSDTLELVVTGLYGKPFLSADRGLVLMPGENIS 124
Query: 109 ISCSHYGVPTPDFSWYKDGSLLRIQSH 135
++CS +P FS K+G L Q
Sbjct: 125 LTCSSAHIPFDRFSLAKEGELSLPQHQ 151
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG
superfamily, rossmann fold, metal mediated protein
interf immune system; HET: NAG; 3.30A {Homo sapiens}
SCOP: b.1.1.3 b.1.1.4
Length = 291
Score = 43.7 bits (102), Expect = 5e-06
Identities = 10/86 (11%), Positives = 28/86 (32%), Gaps = 5/86 (5%)
Query: 52 SFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKDEQQESVAIVVNHPMNISC 111
+ ++N+ ++ + C + G ++ + V P + V + + C
Sbjct: 51 VYELSNV--QEDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRC 108
Query: 112 SHYGV-PTPD--FSWYKDGSLLRIQS 134
G P + + L+ +
Sbjct: 109 QVEGGAPRANLTVVLLRGEKELKREP 134
Score = 26.7 bits (58), Expect = 3.3
Identities = 7/36 (19%), Positives = 11/36 (30%)
Query: 54 VINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPP 89
V ++ T TC V S + + P
Sbjct: 249 VSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFP 284
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 41.5 bits (98), Expect = 5e-06
Identities = 9/56 (16%), Positives = 15/56 (26%), Gaps = 1/56 (1%)
Query: 85 VLVPPFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHYITFF 140
+ P + + + + G P P W KDG + Y
Sbjct: 3 ISSKPVIV-TGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSE 57
Score = 37.3 bits (87), Expect = 2e-04
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 52 SFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNV 85
I+ D+ +YTCTV N+AGS S + ++ +
Sbjct: 63 FLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTI 96
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 42.4 bits (99), Expect = 5e-06
Identities = 10/37 (27%), Positives = 16/37 (43%)
Query: 50 NGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVL 86
F + ++D VYT TV N G + + V+
Sbjct: 102 RSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVI 138
Score = 34.0 bits (77), Expect = 0.007
Identities = 8/45 (17%), Positives = 15/45 (33%), Gaps = 4/45 (8%)
Query: 87 VPPFFK----DEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDG 127
PP +++ +V + + + G P P W K
Sbjct: 12 EPPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAI 56
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 41.5 bits (98), Expect = 6e-06
Identities = 8/50 (16%), Positives = 15/50 (30%), Gaps = 1/50 (2%)
Query: 87 VPPFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHY 136
+ P ++ + I N+ G P P +W S +
Sbjct: 1 LKPKILTASRK-IKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPEL 49
Score = 40.8 bits (96), Expect = 1e-05
Identities = 7/34 (20%), Positives = 11/34 (32%)
Query: 52 SFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNV 85
S + D+ Y V N G ++ V
Sbjct: 59 SIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1,
BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 41.6 bits (98), Expect = 6e-06
Identities = 8/44 (18%), Positives = 16/44 (36%)
Query: 46 YVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPP 89
+ + D+ +Y C S+ +GS + +NV
Sbjct: 49 TRITGEEVEVQDSVPADSGLYACVTSSPSGSDTTYFSVNVSDAL 92
Score = 31.2 bits (71), Expect = 0.041
Identities = 7/49 (14%), Positives = 14/49 (28%), Gaps = 2/49 (4%)
Query: 88 PPFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHY 136
+ ES + + + C +W +DG L +
Sbjct: 3 SGSSG-VEVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRT 49
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor,
adhesion, structural genomics, NEW YORK STR genomics
research consortium, nysgrc; 1.70A {Homo sapiens} PDB:
3rq3_A 3udw_A* 3ucr_A
Length = 117
Score = 41.8 bits (98), Expect = 7e-06
Identities = 12/64 (18%), Positives = 21/64 (32%), Gaps = 1/64 (1%)
Query: 34 GQVIKRYLKDLLYVTRNGSFVINNIAEKDTNVYTCTVSNA-AGSTSKTIQMNVLVPPFFK 92
G I KD + + ++ DT Y C G+ + I + VL +
Sbjct: 54 GWHISPSFKDRVAPGPGLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVLESSVAE 113
Query: 93 DEQQ 96
+
Sbjct: 114 HGAR 117
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein
1 (isoform 2); hydrolase, immunoglobulin domain,
nucleus, protease; 1.15A {Homo sapiens}
Length = 91
Score = 41.2 bits (97), Expect = 7e-06
Identities = 7/44 (15%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Query: 49 RNGSFVINNIAEKDTNVYTCTVSNAAGS-TSKTIQMNVLVPPFF 91
+++ + + Y C V N S SK +++ +
Sbjct: 48 TKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNL 91
Score = 37.3 bits (87), Expect = 2e-04
Identities = 8/38 (21%), Positives = 17/38 (44%)
Query: 97 ESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQS 134
S ++ + + C G P P + W+K+ L ++
Sbjct: 11 TSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHET 48
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 41.5 bits (97), Expect = 1e-05
Identities = 10/40 (25%), Positives = 15/40 (37%)
Query: 46 YVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNV 85
+ + I+ + E+DT Y C SN T V
Sbjct: 85 HQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRV 124
Score = 29.2 bits (65), Expect = 0.30
Identities = 9/50 (18%), Positives = 16/50 (32%), Gaps = 1/50 (2%)
Query: 88 PPFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHYI 137
F + S V + + C G P P+ W+ +G +
Sbjct: 21 MAGFV-QAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQL 69
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon,
OKT3 FAB, signaling protein/antibiotic complex; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Length = 204
Score = 42.6 bits (99), Expect = 1e-05
Identities = 12/127 (9%), Positives = 26/127 (20%), Gaps = 28/127 (22%)
Query: 48 TRNGSFVINNIAEKDTNVYTCTVSN------------AAGSTSKTIQMNVLVPP------ 89
+ + + A+ +Y C S + +K
Sbjct: 46 EDKKKWNLGSNAKDPRGMYQCKGSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKK 105
Query: 90 --------FFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHYITFFL 141
Q + + ++C Y P + W + +
Sbjct: 106 DGSDGNEEMGGITQTPYKVSISGTTVILTCPQY--PGSEILWQHNDKNIGGDEDDKNIGS 163
Query: 142 FFQRLLL 148
L L
Sbjct: 164 DEDHLSL 170
Score = 33.7 bits (76), Expect = 0.012
Identities = 5/48 (10%), Positives = 12/48 (25%), Gaps = 1/48 (2%)
Query: 34 GQVIKRYLKDLLYVTRNGSFVINNIAEK-DTNVYTCTVSNAAGSTSKT 80
+ I D + + +E + Y C + +
Sbjct: 149 DKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANF 196
Score = 27.9 bits (61), Expect = 1.1
Identities = 4/20 (20%), Positives = 10/20 (50%)
Query: 115 GVPTPDFSWYKDGSLLRIQS 134
+ +W+KDG ++ +
Sbjct: 26 DAEAKNITWFKDGKMIGFLT 45
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural
protein, cell membrane, cytoplasm, cytoskeleton,
disease mutation, immunoglobulin domain; NMR {Homo
sapiens}
Length = 100
Score = 40.8 bits (96), Expect = 1e-05
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 52 SFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLV 87
S + + D Y C N AG + T+Q++VL
Sbjct: 63 SLIFEVVRASDAGAYACVAKNRAGEATFTVQLDVLA 98
Score = 39.2 bits (92), Expect = 4e-05
Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 86 LVPPFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHY 136
+ PP F + E+++I + G+P PD SWY +G ++ +
Sbjct: 3 MGPPRFI-QVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLH 52
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 40.2 bits (94), Expect = 2e-05
Identities = 8/40 (20%), Positives = 16/40 (40%)
Query: 46 YVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNV 85
+ + D+ +Y C S+ +GS + +NV
Sbjct: 55 TRITGEEVEVRDSIPADSGLYACVTSSPSGSDTTYFSVNV 94
Score = 37.1 bits (86), Expect = 3e-04
Identities = 8/50 (16%), Positives = 17/50 (34%), Gaps = 1/50 (2%)
Query: 87 VPPFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHY 136
P+ + ES+ + + + C +W +DG L +
Sbjct: 7 AQPWGVPVEVESLLVHPGDLLQLRCRLRD-DVQSINWLRDGVQLVESNRT 55
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 40.0 bits (94), Expect = 3e-05
Identities = 9/52 (17%), Positives = 16/52 (30%), Gaps = 1/52 (1%)
Query: 85 VLVPPFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHY 136
+ P + S + + PT + WY +G L+ S
Sbjct: 5 LDHAPRIT-LRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKI 55
Score = 34.6 bits (80), Expect = 0.002
Identities = 7/34 (20%), Positives = 13/34 (38%)
Query: 52 SFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNV 85
+ I + D+ Y +N G S ++V
Sbjct: 65 TLEILDCHTDDSGTYRAVCTNYKGEASDYATLDV 98
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 38.8 bits (91), Expect = 6e-05
Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 4/64 (6%)
Query: 75 GSTSKTIQMNVLVPPFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQS 134
GS+ + + V P F + A++ + CS G P P +W +G ++
Sbjct: 1 GSSGSS---GMEVAPSFS-SVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYAR 56
Query: 135 HYIT 138
Sbjct: 57 STCE 60
Score = 36.1 bits (84), Expect = 5e-04
Identities = 10/36 (27%), Positives = 14/36 (38%)
Query: 50 NGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNV 85
I + +D YTC NA G S + + V
Sbjct: 63 VAELHIQDALPEDHGTYTCLAENALGQVSCSAWVTV 98
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 38.6 bits (90), Expect = 1e-04
Identities = 12/64 (18%), Positives = 22/64 (34%), Gaps = 5/64 (7%)
Query: 75 GSTSKTIQMNVLVPPFFKDEQ-QESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQ 133
GS+ + V + + VA V + ++C P + W KDG +
Sbjct: 1 GSSGSS---GTDVSSWIVYPSGKVYVAAVRLERVVLTC-ELCRPWAEVRWTKDGEEVVES 56
Query: 134 SHYI 137
+
Sbjct: 57 PALL 60
Score = 32.4 bits (74), Expect = 0.019
Identities = 9/46 (19%), Positives = 17/46 (36%), Gaps = 5/46 (10%)
Query: 54 VINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPP-FFKDEQQES 98
V+ + +D+ Y C + + + S + V PP S
Sbjct: 71 VLPAVQLEDSGEYLCEIDDESASF----TVTVTEPPVRIIYSGPSS 112
>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein
receptor, immunoglobulin V domain fold, symmetric dimer;
1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B
2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B
1p6a_B
Length = 126
Score = 38.3 bits (89), Expect = 2e-04
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 50 NGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLV 87
+ S + N+ D Y C V A G +K I + VLV
Sbjct: 88 DASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVLV 125
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 37.7 bits (88), Expect = 2e-04
Identities = 9/38 (23%), Positives = 12/38 (31%)
Query: 52 SFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPP 89
S D YT +N G S T ++ V
Sbjct: 67 SLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVN 104
Score = 35.8 bits (83), Expect = 8e-04
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 88 PPFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHYITFF 140
PFF + + + I P+ +C G P P W+KDG + +S + T
Sbjct: 8 APFF-EMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQ 59
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 37.3 bits (87), Expect = 2e-04
Identities = 10/53 (18%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Query: 88 PPFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHYITFF 140
P E+ +S + + G P P+ WYK+G + ++
Sbjct: 5 APKIF-ERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYW 56
Score = 36.1 bits (84), Expect = 7e-04
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Query: 34 GQVIKRYLKDLLYVTRNG--SFVINNIAEKDTNVYTCTVSNAAGSTS 78
G I+R + Y + VI ++ +D+ N AG TS
Sbjct: 43 GVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGETS 89
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding
protein C, immunoglobulin domain, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Length = 100
Score = 37.4 bits (87), Expect = 2e-04
Identities = 9/50 (18%), Positives = 16/50 (32%), Gaps = 1/50 (2%)
Query: 88 PPFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHYI 137
F + + + P + WYK+G +R + YI
Sbjct: 7 GAAFAKILDPAYQVDKGGRVRFVV-ELADPKLEVKWYKNGQEIRPSTKYI 55
Score = 30.4 bits (69), Expect = 0.074
Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 4/36 (11%)
Query: 54 VINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPP 89
INN D + Y T + ST ++ V P
Sbjct: 66 FINNCQMTDDSEYYVTAGDEKCST----ELFVRSGP 97
>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin
domain, microsome, protein disulfide isomerase,
thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo
sapiens}
Length = 401
Score = 38.8 bits (89), Expect = 3e-04
Identities = 16/85 (18%), Positives = 26/85 (30%), Gaps = 4/85 (4%)
Query: 48 TRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFK-DEQQESVAIVVNHP 106
T NG+F + + Y T+ T+++ V PP + A P
Sbjct: 251 TGNGTFWLPRVQPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPATLARAAPGEAP 310
Query: 107 MNISCS---HYGVPTPDFSWYKDGS 128
+ C Y + W G
Sbjct: 311 PELLCLVSHFYPSGGLEVEWELRGG 335
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune
system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A
4f8q_A
Length = 226
Score = 38.1 bits (88), Expect = 3e-04
Identities = 12/79 (15%), Positives = 25/79 (31%), Gaps = 4/79 (5%)
Query: 50 NGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKDEQQESVAIVVNHPMNI 109
+ I+N+ D+ Y C + ++ L + V + +++
Sbjct: 82 KAALRIHNVTASDSGKYLCYFQDGDFYEKALVE---LKVAALGSDLHVDVKGYKDGGIHL 138
Query: 110 SC-SHYGVPTPDFSWYKDG 127
C S P P W +
Sbjct: 139 ECRSTGWYPQPQIQWSNNK 157
Score = 30.4 bits (68), Expect = 0.14
Identities = 8/41 (19%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 57 NIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKDEQQE 97
+ +CT+ ++ KT +++ PFF+ Q
Sbjct: 183 IMRGSSGEGVSCTIRSSLLGLEKTASISIA-DPFFRSAQHH 222
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural
cytotoxicity receptor, NK cell receptor, immunoglobulin
fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4
Length = 242
Score = 38.3 bits (89), Expect = 3e-04
Identities = 11/88 (12%), Positives = 27/88 (30%), Gaps = 4/88 (4%)
Query: 51 GSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKDEQ---QESVAIVVNHPM 107
F I ++ + Y+C + + ++++V + ++ +
Sbjct: 60 VKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKV 119
Query: 108 NISCSHYGVPTPDFSWYKDGSLLRIQSH 135
C T F K+G +Q
Sbjct: 120 TFYC-RLDTATSMFLLLKEGRSSHVQRG 146
>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus
receptor, cell adhesion, integrin ligand, glycopr LFA-1
ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo
sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A
1d3e_I 1d3i_I 3tcx_A
Length = 185
Score = 37.8 bits (87), Expect = 4e-04
Identities = 9/86 (10%), Positives = 26/86 (30%), Gaps = 5/86 (5%)
Query: 52 SFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKDEQQESVAIVVNHPMNISC 111
+ ++N+ ++ + C + G ++ + V P + V + + C
Sbjct: 51 VYELSNV--QEDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKQLTLRC 108
Query: 112 SHYGVPTPD---FSWYKDGSLLRIQS 134
G + L+ +
Sbjct: 109 QVEGGAPRAQLTVVLLRGEKELKREP 134
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 37.3 bits (86), Expect = 4e-04
Identities = 9/44 (20%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 46 YVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPP 89
+ S + N+ +D VY C + ++K +++ VL
Sbjct: 61 HSANQLSITVPNVTLQDEGVYKCLHYS-DSVSTKEVKVIVLATM 103
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic
adhesion, arterial smooth muscle cells; 0.96A {Homo
sapiens}
Length = 99
Score = 36.5 bits (85), Expect = 4e-04
Identities = 10/54 (18%), Positives = 16/54 (29%), Gaps = 2/54 (3%)
Query: 34 GQVIKRYLKDLLYVTRNGSF--VINNIAEKDTNVYTCTVSNAAGSTSKTIQMNV 85
Q ++ + G I D YTC N G+ ++ V
Sbjct: 43 RQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEV 96
Score = 35.7 bits (83), Expect = 8e-04
Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 1/54 (1%)
Query: 87 VPPFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHYITFF 140
PP FK ++ + +S G P P SW ++ +R
Sbjct: 4 APPTFK-VSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEE 56
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo
sapiens}
Length = 97
Score = 36.5 bits (85), Expect = 5e-04
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 52 SFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNV 85
+ +I + D Y C V N G S ++ V
Sbjct: 59 ILYVKDITKLDDGTYRCKVVNDYGEDSSYAELFV 92
Score = 30.4 bits (69), Expect = 0.067
Identities = 5/45 (11%), Positives = 8/45 (17%), Gaps = 1/45 (2%)
Query: 97 ESVAIVVNHPMNISCSHYGVPTP-DFSWYKDGSLLRIQSHYITFF 140
+ C +WY L Y +
Sbjct: 9 MHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITY 53
>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology,
X-RAY solution scattering, constrained modelling, immune
system; NMR {Homo sapiens}
Length = 523
Score = 37.9 bits (88), Expect = 5e-04
Identities = 18/82 (21%), Positives = 32/82 (39%), Gaps = 5/82 (6%)
Query: 52 SFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPF-FKDEQQESVAIVVNHPMNIS 110
S V + T Y C V++ +T ++ L P F + ++++ ++
Sbjct: 281 SVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPLSLPSVFLFPPKPKDTLMISRTPEVT 340
Query: 111 CSHYGVPTPD----FSWYKDGS 128
C V D F+WY DG
Sbjct: 341 CVVVDVSHEDPQVKFNWYVDGV 362
Score = 28.3 bits (63), Expect = 1.1
Identities = 6/29 (20%), Positives = 11/29 (37%)
Query: 61 KDTNVYTCTVSNAAGSTSKTIQMNVLVPP 89
K Y+C V++ + KT+
Sbjct: 188 KSHRSYSCQVTHEGSTVEKTVAPTECSAS 216
Score = 26.3 bits (58), Expect = 4.5
Identities = 20/128 (15%), Positives = 36/128 (28%), Gaps = 37/128 (28%)
Query: 22 YNYTNLPQSRNPGQVIKRYLKDLLYVTRNGSFV---INNIAEKDTNVYTCTVSNAAG--- 75
Y P + +++G+ I+ + +D + Y C N++
Sbjct: 48 YRDAMRPSG----------VPTRFSGSKSGTSASLAISGLEAEDESDYYCASWNSSDNSY 97
Query: 76 -----------STSKTIQMNVLVPPFFKDEQQESVAIVVNHPMNISCSHYGV-PTP-DFS 122
K L PP ++ Q +V C P +
Sbjct: 98 VFGTGTKVTVLGQPKANPTVTLFPPSSEELQANKATLV--------CLISDFYPGAVTVA 149
Query: 123 WYKDGSLL 130
W DGS +
Sbjct: 150 WKADGSPV 157
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 36.5 bits (84), Expect = 6e-04
Identities = 7/35 (20%), Positives = 9/35 (25%)
Query: 51 GSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNV 85
I + T Y C VS + V
Sbjct: 72 FELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTV 106
>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation
marker blast-1, BCM1 surface antigen, leukocyte antigen
MEM-102, TCT.1; NMR {Homo sapiens}
Length = 121
Score = 36.4 bits (84), Expect = 7e-04
Identities = 10/41 (24%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 50 NGSFVINNIAEKDTNVYTCTVSNAAGST-SKTIQMNVLVPP 89
+G+ I+ + ++D + Y V G+ I++ VL P
Sbjct: 72 SGALYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQVLDPV 112
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 36.2 bits (84), Expect = 7e-04
Identities = 10/66 (15%), Positives = 19/66 (28%), Gaps = 4/66 (6%)
Query: 72 NAAGSTSKTIQMNVL-VPPFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLL 130
++ S + + V +P F E + + C W+K L
Sbjct: 2 SSGSSGRTSAMLTVRALPIKFT-EGLRNEEATEGATAVLRCE--LSKMAPVEWWKGHETL 58
Query: 131 RIQSHY 136
R +
Sbjct: 59 RDGDRH 64
Score = 30.8 bits (70), Expect = 0.055
Identities = 7/36 (19%), Positives = 11/36 (30%), Gaps = 4/36 (11%)
Query: 54 VINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPP 89
I + +D Y C G + + V P
Sbjct: 76 QIRGLVAEDAGEYLCM----CGKERTSAMLTVRAMP 107
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 37.4 bits (86), Expect = 8e-04
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 53 FVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPP 89
F I+ I D+ V+ C+V+ AG K ++V V P
Sbjct: 387 FTIHRILPPDSGVWVCSVNTVAGMVEKPFNISVKVLP 423
Score = 34.7 bits (79), Expect = 0.007
Identities = 22/116 (18%), Positives = 38/116 (32%), Gaps = 20/116 (17%)
Query: 20 SRYNYTNLPQSRNPGQVIKRYLKDLLYVTRNGSFVINNIAEKDTN---VYTCTVSNAAGS 76
R + Q ++P +V + VTR + + EK + Y C +
Sbjct: 36 GRDFEALMNQHQDPLEVTQD-------VTREWAKKVVWKREKASKINGAYFCEGRVRGEA 88
Query: 77 TS----KTIQMNVLVPPFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGS 128
K Q +P ++ + +NIS + D YK+GS
Sbjct: 89 IRIRTMKMRQQASFLPATL------TMTVDKGDNVNISFKKVLIKEEDAVIYKNGS 138
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 35.7 bits (83), Expect = 8e-04
Identities = 10/36 (27%), Positives = 15/36 (41%)
Query: 54 VINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPP 89
VI + KD YTC V + + S ++ P
Sbjct: 66 VIRGASLKDAGEYTCEVEASKSTASLHVEEKASGPS 101
Score = 31.5 bits (72), Expect = 0.030
Identities = 10/49 (20%), Positives = 15/49 (30%), Gaps = 2/49 (4%)
Query: 88 PPFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHY 136
P + E + + + C TP W KD +R Y
Sbjct: 8 PAAII-KPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKY 54
>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system;
1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E
3csp_A 1py9_A
Length = 139
Score = 36.4 bits (84), Expect = 9e-04
Identities = 8/41 (19%), Positives = 16/41 (39%)
Query: 50 NGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPF 90
+ I N+ D YTC + + +++ V P +
Sbjct: 84 KVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVEDPFY 124
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A
{Homo sapiens}
Length = 184
Score = 36.7 bits (85), Expect = 0.001
Identities = 13/92 (14%), Positives = 29/92 (31%), Gaps = 4/92 (4%)
Query: 51 GSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKD---EQQESVAIVVNHPM 107
I + Y C+ N + + + Q+ ++ F Q A+ +
Sbjct: 52 AVLFIPAMKRSLAGRYRCSYQNGSLWSLPSDQLELVATGVFAKPSLSAQPGPAVSSGGDV 111
Query: 108 NISCSHYGVPTPDFSWYKDGSLLRIQSHYITF 139
+ C F+ YK+G ++ +
Sbjct: 112 TLQC-QTRYGFDQFALYKEGDPAPYKNPERWY 142
>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane,
phosphorylation, immunoglobulin fold, signal; 1.90A
{Rattus norvegicus} SCOP: b.1.1.1
Length = 124
Score = 36.1 bits (83), Expect = 0.001
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 48 TRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPP 89
++GS VI+N+ D +TC V N KT Q+ + V
Sbjct: 78 WKDGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVFE 119
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 35.4 bits (82), Expect = 0.001
Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Query: 52 SFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFK 92
VI+++ +D YT A S S ++N L
Sbjct: 64 KLVIDDVRPEDEGDYTFVPDGYALSLS--AKLNFLEIKVSG 102
Score = 26.6 bits (59), Expect = 2.1
Identities = 6/49 (12%), Positives = 11/49 (22%), Gaps = 2/49 (4%)
Query: 88 PPFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHY 136
+ + + C WYK+G +R
Sbjct: 8 QLEVL-QDIADLTVKAAEQAVFKC-EVSDEKVTGKWYKNGVEVRPSKRI 54
>3pv7_A B7-H6, IG-like domain-containing protein
DKFZP686O24166/DKFZP686I21167; NK cell receptor,
receptor-ligand complex, immune system; HET: NAG; 2.00A
{Homo sapiens} PDB: 3pv6_A*
Length = 248
Score = 36.6 bits (84), Expect = 0.001
Identities = 18/112 (16%), Positives = 37/112 (33%), Gaps = 10/112 (8%)
Query: 23 NYTNLPQSRNPGQVI-KRYLKDLLYVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTI 81
+ + ++ PG ++ LK + + S + I ++ Y C V T+
Sbjct: 58 FFGDHQEAFRPGAIVSPWRLK-----SGDASLRLPGIQLEEAGEYRCEVVVTPLKAQGTV 112
Query: 82 QMNVLVPPFFKDEQQESVAIVVNHPMNISCSHYG-VPTP-DFSWYKDGSLLR 131
Q+ V+ P + + + C G P + +W K
Sbjct: 113 QLEVVASPASRLLLDQVGMK--ENEDKYMCESSGFYPEAINITWEKQTQKFP 162
>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology,
IGSF, cell SU receptor signalling, glycosylation,
membrane protein; HET: NAG; 2.90A {Homo sapiens}
Length = 118
Score = 35.6 bits (82), Expect = 0.001
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 48 TRNGSFVINNIAEKDTNVYTCTVSN-AAGSTSKTIQMNVLVPP 89
RN S + + +D YTC GS S I + VL P
Sbjct: 76 LRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKP 118
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 102
Score = 35.1 bits (81), Expect = 0.001
Identities = 11/52 (21%), Positives = 16/52 (30%), Gaps = 3/52 (5%)
Query: 85 VLVPPFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHY 136
V+ + V +SC + +WYKDG L S
Sbjct: 9 VVFAKEQPAHR--EVQAEAGASATLSC-EVAQAQTEVTWYKDGKKLSSSSKV 57
Score = 28.1 bits (63), Expect = 0.45
Identities = 4/29 (13%), Positives = 9/29 (31%)
Query: 54 VINNIAEKDTNVYTCTVSNAAGSTSKTIQ 82
V+ + + Y+C S +
Sbjct: 69 VVQQAGQAEAGEYSCEAGGQQLSFRLQVA 97
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 36.7 bits (85), Expect = 0.002
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 52 SFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNV 85
IN + D YT N+ G+ + + +NV
Sbjct: 539 GLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572
Score = 32.9 bits (75), Expect = 0.026
Identities = 8/44 (18%), Positives = 14/44 (31%)
Query: 97 ESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHYITFF 140
+ N C P +W+KD L+ Y+ +
Sbjct: 490 YGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRY 533
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 35.0 bits (81), Expect = 0.002
Identities = 7/37 (18%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Query: 54 VINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPF 90
VI N +D Y + + +++V+ P
Sbjct: 64 VIANALTEDEGDYVFAPDA--YNVTLPAKVHVISGPS 98
Score = 29.6 bits (67), Expect = 0.13
Identities = 4/49 (8%), Positives = 11/49 (22%), Gaps = 3/49 (6%)
Query: 88 PPFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHY 136
+ + + + C W K+G ++
Sbjct: 7 GLKIL-TPLTDQTVNLGKEICLKCEISENIPG--KWTKNGLPVQESDRL 52
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 34.7 bits (80), Expect = 0.003
Identities = 9/67 (13%), Positives = 15/67 (22%), Gaps = 4/67 (5%)
Query: 73 AAGSTSKTIQMNVLVPPFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRI 132
+ +S +Q E E V + C W+ D + L
Sbjct: 1 GSSGSSGLVQ---GRRVHII-EDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHA 56
Query: 133 QSHYITF 139
Sbjct: 57 NELNEID 63
Score = 31.6 bits (72), Expect = 0.032
Identities = 9/48 (18%), Positives = 14/48 (29%), Gaps = 5/48 (10%)
Query: 52 SFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVL-VPPFFKDEQQES 98
+ +A KD+ AG + + V P F S
Sbjct: 71 VLTLRQLALKDSGTIYFE----AGDQRASAALRVTEKPSVFSRSGPSS 114
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond,
glycoprotein, immunoglobulin membrane, transmembrane;
HET: NAG; 2.21A {Mus musculus}
Length = 108
Score = 34.5 bits (79), Expect = 0.003
Identities = 7/35 (20%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 55 INNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPP 89
+++++ D YTC++ + + VL P
Sbjct: 75 VSDVSLSDEGQYTCSL-FTMPVKTSKAYLTVLGVP 108
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor,
immune system, IG domain, cytotoxicity, C2-type IG-like
domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 188
Score = 34.8 bits (80), Expect = 0.004
Identities = 11/87 (12%), Positives = 27/87 (31%), Gaps = 4/87 (4%)
Query: 52 SFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKDEQ---QESVAIVVNHPMN 108
F I ++ + Y+C + + ++++V + ++ +
Sbjct: 58 KFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVT 117
Query: 109 ISCSHYGVPTPDFSWYKDGSLLRIQSH 135
C T F K+G +Q
Sbjct: 118 FYC-RLDTATSMFLLLKEGRSSHVQRG 143
>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel,
immunoglobulin fold, IGV domain, TIM, immune system;
2.50A {Mus musculus}
Length = 116
Score = 34.1 bits (78), Expect = 0.005
Identities = 10/41 (24%), Positives = 17/41 (41%)
Query: 49 RNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPP 89
+ S I N E D+ +Y C V + + ++ V P
Sbjct: 71 GDVSLTIENSVESDSGLYCCRVEIPGWFNDQKVTFSLQVKP 111
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast
MYBP-C, C-protein, skeletal muscle fast isoform,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 34.0 bits (77), Expect = 0.006
Identities = 8/59 (13%), Positives = 16/59 (27%)
Query: 30 SRNPGQVIKRYLKDLLYVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVP 88
S++ + + + I + D Y V S ++V P
Sbjct: 59 SKSGARFSFKESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVEAP 117
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2;
IG domain, structural protein; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 104
Score = 33.5 bits (77), Expect = 0.006
Identities = 7/62 (11%), Positives = 22/62 (35%), Gaps = 5/62 (8%)
Query: 80 TIQMNVLVPPFFKDEQQESVAIVVNHPMNISC--SHYGVPTPDFSWYKDGSLLRIQSHYI 137
M+ F+ + + + + H + ++ + + W K+G +++
Sbjct: 7 HSSMDEKKSTAFQKKLEPAYQVSKGHKIRLTVELAD---HDAEVKWLKNGQEIQMSGSKY 63
Query: 138 TF 139
F
Sbjct: 64 IF 65
Score = 32.0 bits (73), Expect = 0.024
Identities = 7/31 (22%), Positives = 12/31 (38%)
Query: 52 SFVINNIAEKDTNVYTCTVSNAAGSTSKTIQ 82
+ I+ + D Y C V ST ++
Sbjct: 73 TLTISQCSLADDAAYQCVVGGEKCSTELFVK 103
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 33.5 bits (77), Expect = 0.006
Identities = 9/59 (15%), Positives = 18/59 (30%), Gaps = 5/59 (8%)
Query: 34 GQVIKRYLKDLLYVTRNGSF---VINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPP 89
G+ I K + G +I + D Y+ + S ++ + P
Sbjct: 44 GEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTGGQSSAKLSVD--LKSGP 100
Score = 27.7 bits (62), Expect = 0.76
Identities = 7/55 (12%), Positives = 14/55 (25%), Gaps = 7/55 (12%)
Query: 88 PPFFKDEQQESVAIVVNHPMNISC--SHYGVPTPDFSWYKDGSLLRIQ-SHYITF 139
+Q E + + C S + W+K+G +
Sbjct: 7 GIMVT-KQLEDTTAYCGERVELECEVSE---DDANVKWFKNGEEIIPGPKSRYRI 57
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 34.8 bits (79), Expect = 0.007
Identities = 14/83 (16%), Positives = 25/83 (30%), Gaps = 1/83 (1%)
Query: 8 EQAMLLDLIPMHSRYNYTNLPQSRNPGQVIKRYLKDLLYVTRNGSFVINNIAEKDTNVYT 67
+ A + Q + + +K SF + N ++D Y
Sbjct: 180 QFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYR 239
Query: 68 CTVSNAAGS-TSKTIQMNVLVPP 89
C + G S ++ V PP
Sbjct: 240 CMIRTEGGVGISNYAELVVKEPP 262
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 34.1 bits (77), Expect = 0.012
Identities = 13/88 (14%), Positives = 30/88 (34%), Gaps = 12/88 (13%)
Query: 46 YVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKDEQQESVAIVVNH 105
+ ++ ++ D+ Y+C + G + T+ + V VPP E+ + +
Sbjct: 55 WAGMGRRLLLRSVQLHDSGNYSCYRA---GRPAGTVHLLVDVPP----EEPQLSCFRKSP 107
Query: 106 PMNISCS-----HYGVPTPDFSWYKDGS 128
N+ C + T +
Sbjct: 108 LSNVVCEWGPRSTPSLTTKAVLLVRKFQ 135
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor,
two-domain structure, V-SET, C2-SET, IG-like domain,
6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens}
PDB: 2zg3_A* 2zg2_A
Length = 214
Score = 33.7 bits (76), Expect = 0.014
Identities = 18/89 (20%), Positives = 27/89 (30%), Gaps = 9/89 (10%)
Query: 48 TRNGSFVINNIAEKDTNVYTCTVSNAAGST----SKTIQMNVLVPPFFKDEQQESVAIVV 103
+N S I + +DT Y V + + V K + +
Sbjct: 79 KKNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALI-EKPDIHFLEPLES 137
Query: 104 NHPMNISCSHYGV----PTPDFSWYKDGS 128
P +SCS G P FSW +
Sbjct: 138 GRPTRLSCSLPGSCEAGPPLTFSWTGNAL 166
Score = 33.3 bits (75), Expect = 0.016
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 47 VTRNGSFVINNIAEKDTNVYTCTVSNAAG--STSKTIQMNV 85
TR+ + E TC + +T +T+Q+NV
Sbjct: 173 TTRSSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQLNV 213
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 32.4 bits (74), Expect = 0.015
Identities = 8/50 (16%), Positives = 17/50 (34%), Gaps = 2/50 (4%)
Query: 88 PPFF-KDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHY 136
P + + S+ + + ++C +WYKDG +
Sbjct: 8 PVHILSPQDKVSLTFTTSERVVLTC-ELSRVDFPATWYKDGQKVEESELL 56
Score = 30.4 bits (69), Expect = 0.083
Identities = 4/36 (11%), Positives = 11/36 (30%), Gaps = 4/36 (11%)
Query: 54 VINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPP 89
++ +D+ + C + + V P
Sbjct: 68 ILPEAKVQDSGEFECRTEGVSAF----FGVTVQDPS 99
>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system;
1.63A {Mus musculus} PDB: 2ptv_A
Length = 110
Score = 31.7 bits (72), Expect = 0.027
Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 48 TRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVP 88
NG+ I+N+ ++D Y V I + V P
Sbjct: 70 ENNGALHISNVRKEDKGTYYMRVLR-ETENELKITLEVFDP 109
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 31.2 bits (71), Expect = 0.038
Identities = 4/52 (7%), Positives = 16/52 (30%), Gaps = 2/52 (3%)
Query: 88 PPFFKDEQQESVAIVVNHPMNISCS-HYGVPTPDFSWYKDGSLLRIQSHYIT 138
++ +++ ++ + C + + W G + S +
Sbjct: 8 HVGIT-KRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQA 58
Score = 30.1 bits (68), Expect = 0.094
Identities = 5/29 (17%), Positives = 9/29 (31%)
Query: 54 VINNIAEKDTNVYTCTVSNAAGSTSKTIQ 82
V+ A D +V S ++
Sbjct: 68 VVREAAPSDAGEVVFSVRGLTSKASLIVR 96
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2edl_A
2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 31.2 bits (71), Expect = 0.039
Identities = 10/63 (15%), Positives = 17/63 (26%), Gaps = 11/63 (17%)
Query: 75 GSTSKTIQMNVLVPPFFKDEQQESVAIVVNHPMNISCSHYGV-PTPDFSWYKDGSLLRIQ 133
GS+ + P F + ++ + C + W K LR
Sbjct: 1 GSSGSS------GPARFT-QDLKTKEASEGATATLQCE---LSKVAPVEWKKGPETLRDG 50
Query: 134 SHY 136
Y
Sbjct: 51 GRY 53
Score = 29.7 bits (67), Expect = 0.13
Identities = 7/36 (19%), Positives = 13/36 (36%), Gaps = 4/36 (11%)
Query: 54 VINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPP 89
I++++ D Y+C S + V P
Sbjct: 65 QIHDLSVADAGEYSCMCGQERTSA----TLTVRALP 96
>3o3u_N Maltose-binding periplasmic protein, advanced Gly END
product-specific receptor; RAGE, AGER, scavenger
receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3cjj_A
2l7u_A* 2e5e_A
Length = 581
Score = 32.2 bits (73), Expect = 0.044
Identities = 23/91 (25%), Positives = 33/91 (36%), Gaps = 11/91 (12%)
Query: 47 VTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPF-------FKDEQQESV 99
V NGS + + +D ++ C N G +K+ N V + D E
Sbjct: 428 VLPNGSLFLPAVGIQDEGIFRCQAMNRNGKETKS---NYRVRVYQIPGKPEIVDSASELT 484
Query: 100 AIVVNHPMNISCSHYGVPTPDFSWYKDGSLL 130
A V N + S P SW+ DG L
Sbjct: 485 AGVPNK-VGTCVSEGSYPAGTLSWHLDGKPL 514
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 31.1 bits (71), Expect = 0.045
Identities = 8/49 (16%), Positives = 15/49 (30%), Gaps = 2/49 (4%)
Query: 88 PPFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHY 136
F E+ ++ + +C P +W K LR +
Sbjct: 8 ANCFT-EELTNLQVEEKGTAVFTC-KTEHPAATVTWRKGLLELRASGKH 54
Score = 27.7 bits (62), Expect = 0.63
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 54 VINNIAEKDTNVYTCTVSNAAGSTSKTIQ 82
I+ + + D++ YTC + A +Q
Sbjct: 66 TISALEKADSDTYTCDIGQAQSRAQLLVQ 94
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion;
2.40A {Homo sapiens}
Length = 145
Score = 31.7 bits (71), Expect = 0.048
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 55 INNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPP 89
I+N+A D YTC++ + + VL P
Sbjct: 107 ISNVALADEGEYTCSIFTMPVR-TAKSLVTVLGIP 140
Score = 25.1 bits (54), Expect = 8.9
Identities = 5/85 (5%), Positives = 13/85 (15%), Gaps = 1/85 (1%)
Query: 55 INNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKDEQQESVAIVVNHPMNISCSHY 114
+ A + ++ + +V + + C
Sbjct: 4 MKETAAAKFERQHMDSPDLGTDDDDKAMADINLSQDDSQPWTSDETVVAGGTVVLKCQVK 63
Query: 115 GVPTPDFSWYK-DGSLLRIQSHYIT 138
W L
Sbjct: 64 DHEDSSLQWSNPAQQTLYFGEKRAL 88
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac
muscle, hypertrophic cardiomyopathy, actin-binding, cell
adhesion, disease mutation; NMR {Homo sapiens}
Length = 95
Score = 30.8 bits (70), Expect = 0.051
Identities = 8/49 (16%), Positives = 14/49 (28%), Gaps = 2/49 (4%)
Query: 88 PPFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHY 136
F ++ SV + P W + GS + + Y
Sbjct: 8 VSAFS-KKPRSVEVAAGSPAVFEAETER-AGVKVRWQRGGSDISASNKY 54
Score = 26.9 bits (60), Expect = 1.3
Identities = 2/31 (6%), Positives = 8/31 (25%)
Query: 52 SFVINNIAEKDTNVYTCTVSNAAGSTSKTIQ 82
+ + + D Y ++ +
Sbjct: 64 TLTVREVGPADQGSYAVIAGSSKVKFDLKVI 94
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform
1; immunoglobulin-like fold, immune system; 1.85A {Homo
sapiens}
Length = 196
Score = 31.4 bits (71), Expect = 0.071
Identities = 17/106 (16%), Positives = 32/106 (30%), Gaps = 8/106 (7%)
Query: 34 GQVIKRYLKDLLYVTRNGSFVINNIAEKDTNVYTCTVSNAAGST--SKTIQMNVLV---P 88
G ++ L F I ++ E Y C + AG + S +++ V
Sbjct: 41 GSPEPWDTQNPLEPKNKARFSIPSMTEHHAGRYRCYYYSPAGWSEPSDPLELVVTGFYNK 100
Query: 89 PFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQS 134
P V N + + C + F ++G +
Sbjct: 101 PTLSALPSPVVTSGEN--VTLQC-GSRLRFDRFILTEEGDHKLSWT 143
>3oai_A Maltose-binding periplasmic protein, myelin prote; schwann cell
membrane protein, immunoglobulin-folding, inter
adhesion, tetramer; HET: MAL; 2.10A {Escherichia coli}
Length = 507
Score = 31.3 bits (71), Expect = 0.091
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 49 RNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLV 87
++GS VI+N+ D +TC V N KT Q+ + V
Sbjct: 465 KDGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYV 503
>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion
molecule, virus entry receptor, STR genomics,
PSI-biology; 1.30A {Homo sapiens}
Length = 128
Score = 30.3 bits (68), Expect = 0.10
Identities = 7/38 (18%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 49 RNGSFVINNIAEKDTNVYTCTVSN-AAGSTSKTIQMNV 85
++ + ++ + +D YTC + GS + V
Sbjct: 91 QDATLALHGLTVEDEGNYTCEFATFPKGSVRGMTWLRV 128
>2qsq_A Carcinoembryonic antigen-related cell adhesion MO; glycoprotein,
GPI-anchor, immunoglobulin DOMA lipoprotein, membrane;
1.95A {Homo sapiens} PDB: 2qst_A 2ver_N* 2gk2_A
Length = 111
Score = 30.3 bits (68), Expect = 0.11
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 47 VTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSK-TIQMNV 85
+ N S +I NI + D YT V + + T Q V
Sbjct: 68 IYPNASLLIQNIIQNDAGFYTLHVIKSDLVNEEATGQFRV 107
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 29.6 bits (67), Expect = 0.13
Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 2/49 (4%)
Query: 88 PPFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHY 136
P F+ E + + ++ + C V P W ++LR Y
Sbjct: 8 PVRFQ-EALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKY 54
Score = 27.3 bits (61), Expect = 1.1
Identities = 8/36 (22%), Positives = 16/36 (44%), Gaps = 4/36 (11%)
Query: 54 VINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPP 89
V+ N+ +D+ Y+C+ + S + V P
Sbjct: 66 VVRNLRPQDSGRYSCSFGDQTTSA----TLTVTALP 97
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG,
inhibitory receptor, disulfide, immune system; 1.70A
{Homo sapiens}
Length = 196
Score = 30.6 bits (69), Expect = 0.15
Identities = 15/107 (14%), Positives = 31/107 (28%), Gaps = 10/107 (9%)
Query: 34 GQVIKRYLKDLLYVTRNGSFVINNIAEKDTNVYTCTVSNAAGST--SKTIQMNV---LVP 88
++ L F I ++ E Y C + G + S +++ +
Sbjct: 41 ESPAPWDRQNPLEPKNKARFSIPSMTEDYAGRYRCYYRSPVGWSQPSDPLELVMTGAYSK 100
Query: 89 PFFKDEQQESVAIVVNHPMNISC-SHYGVPTPDFSWYKDGSLLRIQS 134
P V + + C S + T F K+ + +
Sbjct: 101 PTLSALPSPLVT--SGKSVTLLCQSRSPMDT--FLLCKERAAHPLLC 143
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional
adaptor protein2, transcriptional activation, MYB
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: a.4.1.1
Length = 60
Score = 28.5 bits (64), Expect = 0.17
Identities = 7/38 (18%), Positives = 17/38 (44%), Gaps = 3/38 (7%)
Query: 8 EQAMLLDLIPMHSRYNYTNLPQ---SRNPGQVIKRYLK 42
E+ LL+ + N+ ++ ++ + K Y+K
Sbjct: 15 EEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMK 52
>3bia_X T-cell immunoglobulin and mucin domain- containing protein 4; beta
barrel, immunoglobulin fold, IGV domain, TIM,
glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB:
3bi9_X* 3bib_X*
Length = 116
Score = 29.5 bits (66), Expect = 0.18
Identities = 7/41 (17%), Positives = 13/41 (31%)
Query: 49 RNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPP 89
S I+N D+ VY C + + + +
Sbjct: 71 GEVSLTISNTNRGDSGVYCCRIEVPGWFNDVKKNVRLELRR 111
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion
protein, immunoglobulin fold, I-SET fold, cell adhesion
glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
PDB: 1bqs_A*
Length = 210
Score = 29.9 bits (66), Expect = 0.21
Identities = 7/49 (14%), Positives = 16/49 (32%), Gaps = 1/49 (2%)
Query: 84 NVLVPPFFKDEQQESVAIVVNHPMNISCSHYGV-PTPDFSWYKDGSLLR 131
++ V P + + VA+ + ++C W + L
Sbjct: 2 SLQVKPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLG 50
>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain,
glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens}
PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A
1f6a_B 1g84_A
Length = 323
Score = 30.0 bits (67), Expect = 0.22
Identities = 7/74 (9%), Positives = 18/74 (24%), Gaps = 7/74 (9%)
Query: 61 KDTNVYTCTVSNAAGSTSKTI---QMNVLVPPFFKDEQQESVAIVVNHPMNISCSHYGVP 117
YTC V+ + + + + + + I+C +
Sbjct: 82 LSDRTYTCQVTYQGHTFEDSTKKCADSNPRGVSAYLSRPSPFDLFIRKSPTITCLVVDLA 141
Query: 118 TPD----FSWYKDG 127
+W +
Sbjct: 142 PSKGTVQLTWSRAS 155
Score = 26.2 bits (57), Expect = 4.7
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 64 NVYTCTVSNAAGSTSKTIQMNV 85
+ + C + A S S+T+Q V
Sbjct: 297 DEFICRAVHEAASPSQTVQRAV 318
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 28.8 bits (65), Expect = 0.23
Identities = 2/29 (6%), Positives = 11/29 (37%)
Query: 54 VINNIAEKDTNVYTCTVSNAAGSTSKTIQ 82
+ +++ ++D Y + ++
Sbjct: 70 IFSDVVQEDRGRYQVITNGGQCEAELIVE 98
Score = 28.8 bits (65), Expect = 0.28
Identities = 7/44 (15%), Positives = 12/44 (27%), Gaps = 2/44 (4%)
Query: 88 PPFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLR 131
P E + V + ++ W K+G L
Sbjct: 8 PVLIV-TPLEDQQVFVGDRVEMAV-EVSEEGAQVMWMKNGVELT 49
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane,
disulfide bond, glycoprotein, immunoglobulin domain,
membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A
{Homo sapiens}
Length = 589
Score = 30.4 bits (68), Expect = 0.24
Identities = 12/78 (15%), Positives = 17/78 (21%), Gaps = 17/78 (21%)
Query: 48 TRNGSFVINNIAEKDTNVYTCTVSNAA--GSTSKTIQMNVLVPPFFKDEQQESVAIVVNH 105
S +I TC + I + +PP
Sbjct: 61 RTASSVTFTDI-ASLNIQLTCNILTFGQLEQNVYGITIISGLPP--------------EK 105
Query: 106 PMNISCSHYGVPTPDFSW 123
P N+SC W
Sbjct: 106 PKNLSCIVNEGKKMRCEW 123
Score = 28.8 bits (64), Expect = 0.60
Identities = 6/48 (12%), Positives = 15/48 (31%), Gaps = 7/48 (14%)
Query: 97 ESVAIVVNHPMNISCS-------HYGVPTPDFSWYKDGSLLRIQSHYI 137
ES + ++ C ++ V W + + + + I
Sbjct: 11 ESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTI 58
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3;
structural genomics, joint center for struct genomics,
JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 29.3 bits (65), Expect = 0.24
Identities = 11/64 (17%), Positives = 19/64 (29%), Gaps = 2/64 (3%)
Query: 23 NYTNLPQSRNPGQVIKRYLKDLLYVTRNGSFVINNIAEKDTNVYTCTVSNAAGS-TSKTI 81
+ L + R L + + N+ Y C +SN GS S
Sbjct: 49 DNEALQDAEMENYAHLRAQGGEL-MEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXA 107
Query: 82 QMNV 85
+ +
Sbjct: 108 XLTI 111
>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin
mucin, signaling protein; 1.95A {Mus musculus} PDB:
3kaa_A*
Length = 109
Score = 29.1 bits (65), Expect = 0.27
Identities = 7/40 (17%), Positives = 16/40 (40%)
Query: 48 TRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLV 87
+ S +I N+ D Y C + K +++ + +
Sbjct: 69 KGDVSLIIKNVTLDDHGTYCCRIQFPGLMNDKKLELKLDI 108
>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta
barrel, immunoglobulin fold, IGV domain, TIM, immune
system; 1.50A {Mus musculus}
Length = 115
Score = 28.8 bits (64), Expect = 0.32
Identities = 9/42 (21%), Positives = 10/42 (23%)
Query: 49 RNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPF 90
N S I N D Y C V + V
Sbjct: 72 GNVSLTIENTVVGDGGPYCCVVEIPGAFHFVDYMLEVKPELV 113
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal
regulatory protein alpha, immunoglobulin superfamily,
phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Length = 327
Score = 29.5 bits (66), Expect = 0.34
Identities = 16/83 (19%), Positives = 28/83 (33%), Gaps = 7/83 (8%)
Query: 55 INNIAEKDTNVYTCTVSNAAGST-----SKTIQMNVLVPPFFKDEQQESVAIVVNHPMNI 109
I+NI D Y C +++V P + H ++
Sbjct: 78 ISNITPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATPQHTVSF 137
Query: 110 SCSHYGVPTPD--FSWYKDGSLL 130
+C +G D W+K+G+ L
Sbjct: 138 TCESHGFSPRDITLKWFKNGNEL 160
Score = 27.2 bits (60), Expect = 1.9
Identities = 13/84 (15%), Positives = 28/84 (33%), Gaps = 18/84 (21%)
Query: 59 AEKDTNVYTCTVSNAAGST---------SKTIQMNVLVPPFFKDEQQESVAIVVNHPMNI 109
E + C V++ S+TI++ + + + E+ V
Sbjct: 188 REDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQPVRAENQVNVT------ 241
Query: 110 SCSHYGV-PTP-DFSWYKDGSLLR 131
C P +W ++G++ R
Sbjct: 242 -CQVRKFYPQRLQLTWLENGNVSR 264
>2pnd_A V-SET and immunoglobulin domain containing 4; complement receptor,
IG-like domain, immune system; 1.00A {Mus musculus} PDB:
2icc_A 2ice_S* 2icf_S*
Length = 119
Score = 28.8 bits (64), Expect = 0.35
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 5/41 (12%)
Query: 50 NGSFVINNIAEKDTNVYTCTVSN-----AAGSTSKTIQMNV 85
+ S IN + D N YTC V+ K I++ V
Sbjct: 77 DVSLQINTLQMDDRNHYTCEVTWQTPDGNQVIRDKIIELRV 117
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 28.4 bits (64), Expect = 0.38
Identities = 4/20 (20%), Positives = 4/20 (20%)
Query: 117 PTPDFSWYKDGSLLRIQSHY 136
P W G L
Sbjct: 32 PDVHGQWKLKGQPLAASPDC 51
Score = 28.4 bits (64), Expect = 0.39
Identities = 3/29 (10%), Positives = 12/29 (41%)
Query: 54 VINNIAEKDTNVYTCTVSNAAGSTSKTIQ 82
+++N T + +N + + ++
Sbjct: 63 ILHNCQLGMTGEVSFQAANTKSAANLKVK 91
>2pkd_A SLAM family member 5; signaling lymphocyte activation molecule,
IGV, immunoglobulin variable, IGC, immunoglobulin
constant, signaling protein; 2.04A {Homo sapiens}
Length = 111
Score = 28.0 bits (62), Expect = 0.57
Identities = 9/50 (18%), Positives = 24/50 (48%)
Query: 38 KRYLKDLLYVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLV 87
+ Y + + + N + VI+++ +D Y ++ A + T + N+ +
Sbjct: 59 RNYYERIHALGPNYNLVISDLRMEDAGDYKADINTQADPYTTTKRYNLQI 108
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like
folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A
2dyp_D 2otp_A 3q2c_A
Length = 198
Score = 28.3 bits (63), Expect = 0.77
Identities = 15/88 (17%), Positives = 25/88 (28%), Gaps = 9/88 (10%)
Query: 52 SFVINNIAEKDTNVYTCTVSNAAGSTSK------TIQMNVLVPPFFKDEQQESVAIVVNH 105
F I +I + T Y C + S+ + + P + V
Sbjct: 59 QFPIPSITWEHTGRYRCYYGSDTAGRSESSDPLELVVTGAYIKPTLSAQPSPVVN--SGG 116
Query: 106 PMNISCSHYGVPTPDFSWYKDGSLLRIQ 133
+ + C V F K+G Q
Sbjct: 117 NVTLQC-DSQVAFDGFILCKEGEDEHPQ 143
>3gin_A Sodium/calcium exchanger 1; CBD1, CBD2, NCX, calcium binding domain
1, antiport, calcium transport, calmodulin-binding, cell
membrane; 2.40A {Canis lupus familiaris} PDB: 2dpk_A*
2fws_A
Length = 160
Score = 28.0 bits (62), Expect = 0.78
Identities = 15/96 (15%), Positives = 32/96 (33%), Gaps = 12/96 (12%)
Query: 46 YVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKD---EQQESVAIV 102
+ T +G+ A D TV G T K I++ ++ D E+ ++ +
Sbjct: 60 FRTEDGT----ANAGSDYEFTEGTVVFKPGETQKEIRVGII-----DDDIFEEDKNFLVH 110
Query: 103 VNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHYIT 138
+++ S + L + +T
Sbjct: 111 LSNVKVSSEASEDGILEANHVSALACLGSPSTATVT 146
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold,
natural killer cell receptor, immune SY; HET: NAG; 1.80A
{Homo sapiens} PDB: 1im9_D
Length = 316
Score = 28.3 bits (63), Expect = 0.83
Identities = 12/89 (13%), Positives = 24/89 (26%), Gaps = 9/89 (10%)
Query: 52 SFVINNIAEKDTNVYTCTVSNAAG-------STSKTIQMNVLVPPFFKDEQQESVAIVVN 104
SF ++ + YTC S+ S I + + +
Sbjct: 75 SFNMSPVTTAHAGNYTCRGSHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGPL-VKSG 133
Query: 105 HPMNISCSHYGVPTPDFSWYKDGSLLRIQ 133
+ + C + F +K+G
Sbjct: 134 ERVILQC-WSDIMFEHFFLHKEGISKDPS 161
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells,
immunological receptors, immunoglobulin fold; 1.70A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D
2dli_A 2dl2_A 3h8n_A
Length = 201
Score = 28.3 bits (63), Expect = 0.83
Identities = 16/119 (13%), Positives = 32/119 (26%), Gaps = 16/119 (13%)
Query: 38 KRYLKDLLYVTRNGSFVINNIAEKDTNVYTCTVSNAAGST-----SKTIQMNV---LVPP 89
R + + +F I+ + + Y C S S + + + P
Sbjct: 50 LRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVTHSPYQVSAPSDPLDIVIIGLYEKP 109
Query: 90 FFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGS-----LLRIQSHYITFFLFF 143
+ +V + +SC + ++G L TF F
Sbjct: 110 SLSAQPGPTVL--AGENVTLSC-SSRSSYDMYHLSREGEAHERRLPAGPKVNGTFQADF 165
>3us9_A Sodium/calcium exchanger 1; beta-sandwich, calcium binding protein,
intracellular, metal protein; 2.68A {Canis lupus
familiaris} PDB: 2klt_A
Length = 295
Score = 28.1 bits (62), Expect = 1.1
Identities = 10/63 (15%), Positives = 20/63 (31%), Gaps = 5/63 (7%)
Query: 46 YVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKDEQQESVAIVVNH 105
Y T G+ +D + KTI + V+ E+ ++ + +
Sbjct: 177 YKTIEGT---ARGGGEDFEDTCGELEFQNDEIVKTISVKVIDDEE--YEKNKTFFLEIGE 231
Query: 106 PMN 108
P
Sbjct: 232 PRL 234
Score = 26.1 bits (57), Expect = 4.7
Identities = 14/93 (15%), Positives = 31/93 (33%), Gaps = 6/93 (6%)
Query: 46 YVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKDEQQESVAIVVNH 105
+ T +G+ A D TV G T K I++ ++ E+ ++ + +++
Sbjct: 47 FRTEDGT----ANAGSDYEFTEGTVVFKPGETQKEIRVGIIDDDI--FEEDKNFLVHLSN 100
Query: 106 PMNISCSHYGVPTPDFSWYKDGSLLRIQSHYIT 138
S + L + +T
Sbjct: 101 VKVSSEASEDGILEANHVSALACLGSPSTATVT 133
>1a64_A CD2; domain swapping, hinge loop, oligomer evolution; 2.00A
{Rattus norvegicus} SCOP: b.1.1.1 PDB: 1a7b_A 1cdc_B
1a6p_A 1t6w_A
Length = 97
Score = 26.6 bits (58), Expect = 1.6
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 38 KRYLKDLLY-VTRNGSFVINNIAEKDTNVYTCTVSNAAGST--SKTIQMNVL 86
K +LK + + NG I N+ D+ Y TV + G+ K + + +L
Sbjct: 45 KPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNGTRILDKALDLRIL 96
>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding
homology region (CHR), cell MEMB disease mutation,
glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo
sapiens}
Length = 483
Score = 27.5 bits (60), Expect = 1.6
Identities = 12/118 (10%), Positives = 26/118 (22%), Gaps = 16/118 (13%)
Query: 27 LPQSRNPGQVIKRYLKDLLYVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVL 86
+ + + N + I NI + V +
Sbjct: 222 SQEKVLSALIGHTNCPLIHLDGENVAIKIRNI--SVSASSGTNVVFTTEDNIFGTVIFAG 279
Query: 87 VPPFFKDEQQESVAIVVNHPMNISCSHYGVPTPDFSWYKDGSLLRIQSHYITFFLFFQ 144
PP + P ++C + + SW + ++ L
Sbjct: 280 YPP--------------DTPQQLNCETHDLKEIICSWNPGRVTALVGPRATSYTLVES 323
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics,
NPPSFA; NMR {Schizosaccharomyces pombe}
Length = 58
Score = 25.9 bits (57), Expect = 1.7
Identities = 8/39 (20%), Positives = 16/39 (41%), Gaps = 4/39 (10%)
Query: 8 EQAMLLDLIPMHSRYNYTN----LPQSRNPGQVIKRYLK 42
E+ +L+D N+ + + +R + YLK
Sbjct: 16 EELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLK 54
>3fso_A Integrin beta-4, GP150; immunoglobulin fold, cell adhesion,
alternative splicing, disease mutation, epidermolysis
bullosa, glycoprotein, membrane; 1.41A {Homo sapiens}
PDB: 3fq4_A 3h6a_A
Length = 123
Score = 26.7 bits (59), Expect = 2.2
Identities = 11/67 (16%), Positives = 24/67 (35%), Gaps = 8/67 (11%)
Query: 46 YVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVL----VPPFFKDEQQESVAI 101
Y T++G+ +D + G K +Q+ +L V + Q +
Sbjct: 42 YRTQDGT----AQGNRDYIPVEGELLFQPGEAWKELQVKLLELQEVDSLLRGRQVRRFHV 97
Query: 102 VVNHPMN 108
+++P
Sbjct: 98 QLSNPKF 104
>2frg_P TREM-like transcript-1; immunoglobulin-like, beta-sandwich, cell
surface receptor, triggering receptor, platelet
receptor, ITIM, immune system; 1.19A {Homo sapiens}
Length = 106
Score = 26.4 bits (58), Expect = 2.2
Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 3/44 (6%)
Query: 48 TRNGSFV--INNIAEKDTNVYTCTVSNAAG-STSKTIQMNVLVP 88
G + + E+D Y C V A G + +N+L P
Sbjct: 63 LGGGLLQVEMVTLQEEDAGEYGCMVDGARGPQILHRVSLNILPP 106
>2nw2_A ELS4 TCR alpha chain; T cell receptor, immune system; 1.40A {Homo
sapiens} PDB: 2nx5_D 4dzb_A
Length = 200
Score = 26.8 bits (59), Expect = 2.4
Identities = 5/32 (15%), Positives = 12/32 (37%)
Query: 94 EQQESVAIVVNHPMNISCSHYGVPTPDFSWYK 125
+Q + + I+C++ WY+
Sbjct: 4 DQPTEMTATEGAIVQINCTYQTSGFNGLFWYQ 35
>1xt5_A Variable region-containing chitin-binding protein 3; innate
immunity, VCBP, primordial antigen receptor, florida
lancelet, amphioxus; 1.15A {Branchiostoma floridae}
Length = 135
Score = 26.4 bits (57), Expect = 2.5
Identities = 6/38 (15%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 52 SFVINNIAEKDTNVYTCTVSNAAGSTSKTIQM-NVLVP 88
+ + ++ +D Y C V+ + T + +V++
Sbjct: 93 TLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLK 130
>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase,
complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas
testosteroni} PDB: 2dki_A*
Length = 639
Score = 27.2 bits (60), Expect = 2.8
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 9 QAMLLDLIPMHSRYNYTNLPQSR 31
+ D S + + L Q+R
Sbjct: 120 HGRVQDTEDGLSEFPHVILNQAR 142
>1wgo_A VPS10 domain-containing receptor sorcs2; polycystic kidney disease,
PKD, structural genomics, KIAA1329 protein; NMR {Homo
sapiens} SCOP: b.1.3.1
Length = 123
Score = 26.3 bits (57), Expect = 3.1
Identities = 5/23 (21%), Positives = 8/23 (34%)
Query: 67 TCTVSNAAGSTSKTIQMNVLVPP 89
+ N AG + + V P
Sbjct: 99 SVRAENTAGHDEAVLFVQVSGPS 121
>2z0j_A Putative uncharacterized protein TTHA1438; uncharacterized
conserved protein, structural genomics, UNKN function,
NPPSFA; HET: MES; 1.50A {Thermus thermophilus}
Length = 237
Score = 26.6 bits (58), Expect = 3.3
Identities = 16/81 (19%), Positives = 29/81 (35%), Gaps = 14/81 (17%)
Query: 22 YNYTNLPQSRNPGQVIKRYLKDLLYVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTI 81
++ N P+ QV R ++ T NG+ + A +V ++ NA
Sbjct: 73 FDLGNSPREALSAQVAGR---VVVMSTTNGTKAAHAAARTAKHVLLASLYNAHA------ 123
Query: 82 QMNVLVPPFFKDEQQESVAIV 102
++ E VAI+
Sbjct: 124 -----AARLARELATEEVAIL 139
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.9 bits (59), Expect = 3.5
Identities = 10/54 (18%), Positives = 20/54 (37%), Gaps = 9/54 (16%)
Query: 17 PMHSRY--NYTNLPQSRNPGQVIKRYLKDL---LYVTRNGSFVINNIAEKDTNV 65
P HS ++L + KD+ +Y T +GS ++ ++
Sbjct: 426 PFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGS----DLRVLSGSI 475
>3mlq_A DNA-directed RNA polymerase subunit beta; tudor,
transferase-transcription complex; 2.91A {Thermus
aquaticus}
Length = 188
Score = 26.4 bits (59), Expect = 3.6
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 40 YLKDLLYVTRNGSFVIN 56
+L L +T +GSF+IN
Sbjct: 99 FLGHLPLMTEDGSFIIN 115
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.7 bits (58), Expect = 3.8
Identities = 15/147 (10%), Positives = 37/147 (25%), Gaps = 50/147 (34%)
Query: 8 EQA-----MLLDLIP-----MHSRYNYTNLPQSRNPGQVIKRYLKDL-------LYVTRN 50
+ L +I + ++ +I+ L L ++
Sbjct: 320 REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD--- 376
Query: 51 GSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKDEQQESVAIVVNHPMNIS 110
+ ++ + + + + D + V +VVN S
Sbjct: 377 -RLS---VFPPSAHI-----------PTILLSL------IWFDVIKSDVMVVVNKLHKYS 415
Query: 111 CSHYGVPTPDFSWYKDGSLLRIQSHYI 137
K+ + + I S Y+
Sbjct: 416 LV--------EKQPKEST-ISIPSIYL 433
>3ead_A Na/Ca exchange protein; CBD1, calcium regulation, membrane,
transmembrane, membrane; 2.25A {Drosophila melanogaster}
Length = 137
Score = 25.8 bits (57), Expect = 4.4
Identities = 13/66 (19%), Positives = 24/66 (36%), Gaps = 12/66 (18%)
Query: 46 YVTRNGSFVINNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKD---EQQESVAIV 102
Y T++G+ A D +S G + ++ V+ D E+ E I
Sbjct: 41 YETQDGT----ASAGTDFVGRKGLLSFPPGVDEQRFRIEVI-----DDDVFEEDECFYIR 91
Query: 103 VNHPMN 108
+ +P
Sbjct: 92 LFNPSE 97
>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG
BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1
b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*
Length = 457
Score = 26.0 bits (57), Expect = 5.1
Identities = 11/79 (13%), Positives = 23/79 (29%), Gaps = 17/79 (21%)
Query: 61 KDTNVYTCTVSNAAGSTSKTIQMNV-----------LVPPFFKDEQQESVAIV------V 103
+ Y C VSN A ++ +PP + + V++
Sbjct: 324 LNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFY 383
Query: 104 NHPMNISCSHYGVPTPDFS 122
+ + G P ++
Sbjct: 384 PSDIAVEWESNGQPENNYK 402
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet,
C2-SET immunoglobulin superfamily, H-bonded G strand
PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4
b.1.1.4 PDB: 1xmw_A
Length = 186
Score = 25.6 bits (55), Expect = 6.1
Identities = 14/104 (13%), Positives = 32/104 (30%), Gaps = 22/104 (21%)
Query: 50 NGSFVINNIAE-KDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKDEQQESV--------- 99
+ V+ + +E +D+ Y C + +T ++ V K + +
Sbjct: 43 DKHLVLQDFSEVEDSGYYVCYTPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKK 102
Query: 100 ----AIVVNHPMNISCSHYG--------VPTPDFSWYKDGSLLR 131
+ + + S + W KDGS++
Sbjct: 103 DGSQTNKAKNLVQVDGSRGDGSVLLTCGLTDKTIKWLKDGSIIS 146
>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus
musculus} PDB: 2qhr_L 3ffd_B 4dcq_A
Length = 218
Score = 25.7 bits (57), Expect = 6.2
Identities = 5/24 (20%), Positives = 12/24 (50%)
Query: 61 KDTNVYTCTVSNAAGSTSKTIQMN 84
+ N +TC V++ + K++
Sbjct: 194 RSHNSFTCQVTHEGDTVEKSLSPA 217
>2jjs_C Leukocyte surface antigen CD47; signal regulatory protein alpha,
immunoglobulin superfamily, transmembrane,
phosphoprotein, paired receptor; HET: NAG; 1.85A {Homo
sapiens} PDB: 2jjt_C* 2vsc_A*
Length = 127
Score = 25.2 bits (54), Expect = 6.4
Identities = 8/41 (19%), Positives = 13/41 (31%)
Query: 56 NNIAEKDTNVYTCTVSNAAGSTSKTIQMNVLVPPFFKDEQQ 96
+ A T YTC V+ I++ V +
Sbjct: 84 KSDAVSHTGNYTCEVTELTREGETIIELKYRVVSWSTRHHH 124
>2kzw_A Uncharacterized protein; structural genomics, northeast structural
genomics consortiu PSI-2, protein structure initiative;
NMR {Methanosarcina mazei}
Length = 145
Score = 25.2 bits (55), Expect = 7.3
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 69 TVSNAAGSTSKTIQMNVL 86
VSN S S ++ + L
Sbjct: 121 IVSNENDSDSASVTIRAL 138
>3lu0_C DNA-directed RNA polymerase subunit beta; E. coli RNA polymerase,
nucleotidyltransferase, transcription, transferase;
11.20A {Escherichia coli} PDB: 3iyd_C*
Length = 1342
Score = 25.8 bits (57), Expect = 7.3
Identities = 11/60 (18%), Positives = 26/60 (43%), Gaps = 8/60 (13%)
Query: 5 MNVEQAMLLDL---IPMHSR---YNYTNLPQSRNPGQVIKR--YLKDLLYVTRNGSFVIN 56
+V++ + + P+ + Y + ++ Y+ ++ +T NG+FVIN
Sbjct: 80 FDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVIN 139
>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus
musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A
1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B
2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B*
2aq3_A 3mc0_A 3byt_A 3bzd_A ...
Length = 238
Score = 25.3 bits (55), Expect = 7.6
Identities = 5/29 (17%), Positives = 6/29 (20%)
Query: 60 EKDTNVYTCTVSNAAGSTSKTIQMNVLVP 88
N + C V S P
Sbjct: 196 HNPRNHFRCQVQFHGLSEEDKWPEGSPKP 224
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 25.5 bits (55), Expect = 8.0
Identities = 21/112 (18%), Positives = 31/112 (27%), Gaps = 52/112 (46%)
Query: 14 DLIPMH---SRYNYTNLPQSRNPGQVIKRYLKDLLYVTRNGSFVI-----NNIA------ 59
+ P+ S ++ Q K++L VI NIA
Sbjct: 140 KVPPLIRIVSGLELSDTKQKG------KKFL------------VIAYEPFENIAIELPPN 181
Query: 60 EKDTNVYTCTVSNAAGST------------SK--TIQMNVLVPPFFKDEQQE 97
E + +N G SK +Q FFK +QE
Sbjct: 182 EILFSENNDMDNNNDGVDELNKKCTFWDAISKLYYVQF------FFKQAEQE 227
>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin
fold, immune surveillance of cell stress PROT A/B,
MIC-A/B binding, epithelium; 3.04A {Homo sapiens}
Length = 259
Score = 25.6 bits (56), Expect = 8.0
Identities = 7/32 (21%), Positives = 10/32 (31%)
Query: 94 EQQESVAIVVNHPMNISCSHYGVPTPDFSWYK 125
+ +SV I+C T WY
Sbjct: 7 GRTKSVIRQTGSSAEITCDLAEGSTGYIHWYL 38
>1iq8_A Archaeosine tRNA-guanine transglycosylase; (alpha/beta)8 barrel,
riken structural genomics/proteomics initiative, RSGI;
2.20A {Pyrococcus horikoshii} SCOP: b.122.1.1 c.1.20.1
d.17.6.1 PDB: 1it7_A* 1it8_A* 1j2b_A
Length = 582
Score = 25.4 bits (56), Expect = 8.0
Identities = 7/31 (22%), Positives = 14/31 (45%)
Query: 39 RYLKDLLYVTRNGSFVINNIAEKDTNVYTCT 69
Y KD Y+T G+ ++ + + C+
Sbjct: 255 LYAKDDRYMTPEGTKRLDELDYFPCSCPVCS 285
>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D,
mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo
sapiens}
Length = 253
Score = 25.2 bits (55), Expect = 8.3
Identities = 5/29 (17%), Positives = 9/29 (31%)
Query: 60 EKDTNVYTCTVSNAAGSTSKTIQMNVLVP 88
+ N + C V S + + P
Sbjct: 203 QNPRNHFRCQVQFYGLSENDEWTQDRAKP 231
>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine;
HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*
Length = 240
Score = 25.3 bits (55), Expect = 8.9
Identities = 12/70 (17%), Positives = 21/70 (30%), Gaps = 10/70 (14%)
Query: 65 VYTCTVSNAAGSTSKTIQMN----VLVPPFFKDEQ--QESVAIVVNHPMNISCSHYGVPT 118
+C ++ + L PP KD + + + + P
Sbjct: 2 TKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCV----VVDVSHEDPE 57
Query: 119 PDFSWYKDGS 128
F+WY DG
Sbjct: 58 VKFNWYVDGV 67
>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C
region, hinge region, immunoglobulin; HET: NAG FUL NDG
BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1
b.1.1.2 b.1.1.2 b.1.1.2
Length = 434
Score = 25.3 bits (55), Expect = 9.8
Identities = 4/23 (17%), Positives = 9/23 (39%)
Query: 61 KDTNVYTCTVSNAAGSTSKTIQM 83
+ + C V++AA +
Sbjct: 305 LNGKEFKCRVNSAAFPAPIEKTI 327
>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate
immunity, immunoglobulin-like I2 type natural killer
cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB:
3pv6_B*
Length = 120
Score = 24.5 bits (53), Expect = 9.9
Identities = 11/50 (22%), Positives = 17/50 (34%), Gaps = 5/50 (10%)
Query: 22 YNYTNLPQSRNPGQVIKRYLKDLLYVTRNGSFVINNIAEKDTNVYTCTVS 71
N T + R R+L D I ++ D ++Y C V
Sbjct: 57 RNGTPEFRGRLAPLASSRFLHD-----HQAELHIRDVRGHDASIYVCRVE 101
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.135 0.403
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,275,968
Number of extensions: 121861
Number of successful extensions: 1022
Number of sequences better than 10.0: 1
Number of HSP's gapped: 838
Number of HSP's successfully gapped: 521
Length of query: 148
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 63
Effective length of database: 4,328,508
Effective search space: 272696004
Effective search space used: 272696004
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.7 bits)