BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6362
(157 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/51 (78%), Positives = 41/51 (80%)
Query: 106 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINFFVHIFFKENINK 156
ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLI I +N K
Sbjct: 102 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGK 152
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/128 (39%), Positives = 66/128 (51%), Gaps = 21/128 (16%)
Query: 38 RNRATNLNARMHDGTTPLILAARLAIEGMVEDLIN--------DFVCSPGLHDWFWTLGI 89
RNRATNLNARMHDGTTPLILAARLAIEGMVEDLI D LH W +
Sbjct: 105 RNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALH-WAAAVNN 163
Query: 90 EHVCNVLVILITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINFFVHIF 149
N+L++ N +A+ TPL LAAR + L++ F +
Sbjct: 164 TEAVNILLM------------HHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANRE 211
Query: 150 FKENINKF 157
+++++
Sbjct: 212 ITDHMDRL 219
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 72.8 bits (177), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 35/51 (68%), Positives = 43/51 (84%)
Query: 106 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINFFVHIFFKENINK 156
ILLRNRAT+L+ARMHDGTTPLILAARLA+EGM+EDLIN + +++ K
Sbjct: 73 ILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGK 123
Score = 70.1 bits (170), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 71/120 (59%), Gaps = 5/120 (4%)
Query: 38 RNRATNLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGIEHVCNVLV 97
RNRAT+L+ARMHDGTTPLILAARLA+EGM+EDLIN + D LG +
Sbjct: 76 RNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDD----LGKSALHWAAA 131
Query: 98 ILITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINFFVHIFFKENINKF 157
+ D V+LL+N A N + + + TPL LAAR + L++ F + +++++
Sbjct: 132 VNNVDAAVVLLKNGA-NKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRL 190
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/51 (66%), Positives = 43/51 (84%)
Query: 106 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINFFVHIFFKENINK 156
IL+RNRAT+L+ARMHDGTTPLILAARLA+EGM+EDLIN + +++ K
Sbjct: 108 ILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGK 158
Score = 69.7 bits (169), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 71/120 (59%), Gaps = 5/120 (4%)
Query: 38 RNRATNLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGIEHVCNVLV 97
RNRAT+L+ARMHDGTTPLILAARLA+EGM+EDLIN + D LG +
Sbjct: 111 RNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDD----LGKSALHWAAA 166
Query: 98 ILITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINFFVHIFFKENINKF 157
+ D V+LL+N A N + + + TPL LAAR + L++ F + +++++
Sbjct: 167 VNNVDAAVVLLKNGA-NKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRL 225
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/51 (66%), Positives = 43/51 (84%)
Query: 106 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINFFVHIFFKENINK 156
IL+RNRAT+L+ARMHDGTTPLILAARLA+EGM+EDLIN + +++ K
Sbjct: 108 ILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGK 158
Score = 69.7 bits (169), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 71/120 (59%), Gaps = 5/120 (4%)
Query: 38 RNRATNLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGIEHVCNVLV 97
RNRAT+L+ARMHDGTTPLILAARLA+EGM+EDLIN + D LG +
Sbjct: 111 RNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDD----LGKSALHWAAA 166
Query: 98 ILITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINFFVHIFFKENINKF 157
+ D V+LL+N A N + + + TPL LAAR + L++ F + +++++
Sbjct: 167 VNNVDAAVVLLKNGA-NKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRL 225
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/51 (66%), Positives = 43/51 (84%)
Query: 106 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINFFVHIFFKENINK 156
IL+RNRAT+L+ARMHDGTTPLILAARLA+EGM+EDLIN + +++ K
Sbjct: 76 ILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGK 126
Score = 70.1 bits (170), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 71/120 (59%), Gaps = 5/120 (4%)
Query: 38 RNRATNLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGIEHVCNVLV 97
RNRAT+L+ARMHDGTTPLILAARLA+EGM+EDLIN + D LG +
Sbjct: 79 RNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDD----LGKSALHWAAA 134
Query: 98 ILITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINFFVHIFFKENINKF 157
+ D V+LL+N A N + + + TPL LAAR + L++ F + +++++
Sbjct: 135 VNNVDAAVVLLKNGA-NKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRL 193
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/51 (66%), Positives = 43/51 (84%)
Query: 106 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINFFVHIFFKENINK 156
IL+RNRAT+L+ARMHDGTTPLILAARLA+EGM+EDLIN + +++ K
Sbjct: 109 ILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGK 159
Score = 69.7 bits (169), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 71/120 (59%), Gaps = 5/120 (4%)
Query: 38 RNRATNLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGIEHVCNVLV 97
RNRAT+L+ARMHDGTTPLILAARLA+EGM+EDLIN + D LG +
Sbjct: 112 RNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDD----LGKSALHWAAA 167
Query: 98 ILITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINFFVHIFFKENINKF 157
+ D V+LL+N A N + + + TPL LAAR + L++ F + +++++
Sbjct: 168 VNNVDAAVVLLKNGA-NKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRL 226
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 69.3 bits (168), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 71/120 (59%), Gaps = 5/120 (4%)
Query: 38 RNRATNLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGIEHVCNVLV 97
RNRAT+L+ARMHDGTTPLILAARLA+EGM+EDLIN + D LG +
Sbjct: 2 RNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDD----LGKSALHWAAA 57
Query: 98 ILITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINFFVHIFFKENINKF 157
+ D V+LL+N A N + + + TPL LAAR + L++ F + +++++
Sbjct: 58 VNNVDAAVVLLKNGA-NKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRL 116
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/49 (67%), Positives = 41/49 (83%)
Query: 108 LRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINFFVHIFFKENINK 156
LRNRAT+L+ARMHDGTTPLILAARLA+EGM+EDLIN + +++ K
Sbjct: 1 LRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGK 49
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 34.7 bits (78), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 49/104 (47%), Gaps = 20/104 (19%)
Query: 42 TNLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGL------HDWFWTLGIEHVCNV 95
++NA+ DG TPL LAAR EG +E I + + G D + L +
Sbjct: 26 ADVNAKDKDGYTPLHLAAR---EGHLE--IVEVLLKAGADVNAKDKDGYTPLHLAAREGH 80
Query: 96 LVILITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVE 139
L I V +L ++NA+ DG TPL LAAR EG +E
Sbjct: 81 LEI------VEVLLKAGADVNAKDKDGYTPLHLAAR---EGHLE 115
Score = 31.2 bits (69), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 101 TDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVE 139
DD+V +L ++NA+ DG TPL LAAR EG +E
Sbjct: 14 QDDEVRILMANGADVNAKDKDGYTPLHLAAR---EGHLE 49
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 34.7 bits (78), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 49/104 (47%), Gaps = 20/104 (19%)
Query: 42 TNLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGL------HDWFWTLGIEHVCNV 95
++NA+ DG TPL LAAR EG +E I + + G D + L +
Sbjct: 26 ADVNAKDKDGYTPLHLAAR---EGHLE--IVEVLLKAGADVNAKDKDGYTPLHLAAREGH 80
Query: 96 LVILITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVE 139
L I V +L ++NA+ DG TPL LAAR EG +E
Sbjct: 81 LEI------VEVLLKAGADVNAKDKDGYTPLHLAAR---EGHLE 115
Score = 31.2 bits (69), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 101 TDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVE 139
DD+V +L ++NA+ DG TPL LAAR EG +E
Sbjct: 14 QDDEVRILMANGADVNAKDKDGYTPLHLAAR---EGHLE 49
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 34.7 bits (78), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 49/105 (46%), Gaps = 20/105 (19%)
Query: 41 ATNLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGL------HDWFWTLGIEHVCN 94
++NA+ DG TPL LAAR EG +E I + + G D + L +
Sbjct: 37 GADVNAKDKDGYTPLHLAAR---EGHLE--IVEVLLKAGADVNAKDKDGYTPLHLAAREG 91
Query: 95 VLVILITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVE 139
L I V +L ++NA+ DG TPL LAAR EG +E
Sbjct: 92 HLEI------VEVLLKAGADVNAKDKDGYTPLHLAAR---EGHLE 127
Score = 31.2 bits (69), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 101 TDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVE 139
DD+V +L ++NA+ DG TPL LAAR EG +E
Sbjct: 26 QDDEVRILMANGADVNAKDKDGYTPLHLAAR---EGHLE 61
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%)
Query: 101 TDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINFFVHIFFKEN 153
DD+V +L ++NA DG TPL LAA+L +VE L+ + + ++N
Sbjct: 26 QDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDN 78
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 31.2 bits (69), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 101 TDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVE 139
DD+V +L ++NA+ DG TPL LAAR EG +E
Sbjct: 14 QDDEVRILMANGADVNAKDKDGYTPLHLAAR---EGHLE 49
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 30.4 bits (67), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 21/116 (18%)
Query: 41 ATNLNARMHDGTTPLILAARLAIEGMVEDLIN--------DFVCSPGLHDWFWTLGIEHV 92
++NA DG TPL AA+ + +V+ LI+ D LH + G + +
Sbjct: 27 GADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLH-YAAKEGHKEI 85
Query: 93 CNVLVILITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINFFVHI 148
+L+ ++ ++NA+ DG TPL AA+ + +V+ LI+ +
Sbjct: 86 VKLLI------------SKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADV 129
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 29/49 (59%)
Query: 105 VILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINFFVHIFFKEN 153
V LL ++ ++NA+ DG TPL AA+ + +V+ LI+ + K++
Sbjct: 53 VKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDS 101
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 29.6 bits (65), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 103 DDVILLRNRATNLNARMHDGTTPLILAAR 131
++V L ++ ++NAR DG TPL LAA+
Sbjct: 23 EEVKKLLSKGADVNARSKDGNTPLHLAAK 51
Score = 27.3 bits (59), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 39 NRATNLNARMHDGTTPLILAAR 60
++ ++NAR DG TPL LAA+
Sbjct: 30 SKGADVNARSKDGNTPLHLAAK 51
>pdb|2PB0|A Chain A, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
pdb|2PB0|B Chain B, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
pdb|2PB2|A Chain A, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
pdb|2PB2|B Chain B, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
Length = 420
Score = 29.3 bits (64), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%)
Query: 88 GIEHVCNVLVILITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEG 136
G+ +C+ L+ D+V R +L A MH G TP IL + A+ G
Sbjct: 226 GLRDLCDEHQALLVFDEVQCGMGRTGDLFAYMHYGVTPDILTSAKALGG 274
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 29.3 bits (64), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 106 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINFFVHIFFKE 152
+LLRN A ++NA +GTTPL LAA L +VE L+ + + K+
Sbjct: 53 VLLRNGA-DVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKD 98
>pdb|4ADB|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADB|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADB|C Chain C, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADB|D Chain D, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|C Chain C, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|D Chain D, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|C Chain C, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|D Chain D, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADE|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADE|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
Length = 406
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 88 GIEHVCNVLVILITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEG 136
G+ +CN L+ D+V R L A MH G TP +L A+ G
Sbjct: 208 GLRELCNRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDLLTTAKALGG 256
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 27.3 bits (59), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 107 LLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLI 142
LL+N+A +NA+ D TPL AAR+ MV+ L+
Sbjct: 66 LLQNKA-KVNAKAKDDQTPLHCAARIGHTNMVKLLL 100
Score = 26.9 bits (58), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 101 TDDDVILLRNRATNLNARMHDGTTPLILAARL 132
TD +LL+N A+ N DGTTPL +A RL
Sbjct: 357 TDIVTLLLKNGASP-NEVSSDGTTPLAIAKRL 387
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 27.3 bits (59), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 54/117 (46%), Gaps = 7/117 (5%)
Query: 41 ATNLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWT-LGIEHVCNVLVIL 99
++NA + GTTPL LAA +VE L+ + +T L + L I+
Sbjct: 37 GADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAYWGHLEIV 96
Query: 100 ITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINFFVHIFFKENINK 156
+LL+N A ++NA DG TPL LAA+ +VE L+ + ++ K
Sbjct: 97 -----EVLLKNGA-DVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGK 147
Score = 26.6 bits (57), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 101 TDDDVILLRNRATNLNARMHDGTTPLILAA 130
DD+V +L ++NA + GTTPL LAA
Sbjct: 26 QDDEVRILMANGADVNAADNTGTTPLHLAA 55
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 27.3 bits (59), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 101 TDDDVILLRNRATNLNARMHDGTTPLILAAR 131
DD+V +L ++ A+ +G+TPL LAAR
Sbjct: 36 QDDEVRILMANGADVAAKDKNGSTPLHLAAR 66
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 26.9 bits (58), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 101 TDDDVILLRNRATNLNARMHDGTTPLILAAR 131
DD+V +L ++ A+ +G+TPL LAAR
Sbjct: 18 QDDEVRILMANGADVAAKDKNGSTPLHLAAR 48
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 26.9 bits (58), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 5/116 (4%)
Query: 41 ATNLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGIEHVCNVLVILI 100
++NA H G TPL LAA +VE L+ + D + + + +
Sbjct: 37 GADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNG-ADVNADDSLGVTPLHLAADRGHLEV 95
Query: 101 TDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINFFVHIFFKENINK 156
+ +LL+N A ++NA H+G TPL LAA + +VE L+ + ++ K
Sbjct: 96 VE---VLLKNGA-DVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGK 147
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 26.9 bits (58), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 51/121 (42%), Gaps = 15/121 (12%)
Query: 41 ATNLNARMHDGTTPLILAARLAIEGMVEDLIN---DFVCS--PGLHDWFWTLGIEHVCNV 95
++NA +DG TPL LAA +VE L+ D S G+ H+ V
Sbjct: 37 GADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGHLEIV 96
Query: 96 LVILITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINFFVHIFFKENIN 155
V+L ++NA +DG TPL LAA+ +VE L+ + ++
Sbjct: 97 EVLL----------KHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFG 146
Query: 156 K 156
K
Sbjct: 147 K 147
Score = 26.9 bits (58), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 101 TDDDVILLRNRATNLNARMHDGTTPLILAAR 131
DD+V +L ++NA +DG TPL LAA
Sbjct: 26 QDDEVRILMANGADVNATDNDGYTPLHLAAS 56
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 26.6 bits (57), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 106 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINFFVHIFFKENINK 156
+LL+N A ++NA+ +G TPL LAA +VE L+ + + ++ K
Sbjct: 98 VLLKNGA-DVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGK 147
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 26.2 bits (56), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Query: 97 VILITDDDVI-----LLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIN 143
+L +DD + LL + ++N R G TPLILA G+V+ L+
Sbjct: 209 ALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 260
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 26.2 bits (56), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Query: 97 VILITDDDVI-----LLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIN 143
+L +DD + LL + ++N R G TPLILA G+V+ L+
Sbjct: 189 ALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 26.2 bits (56), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 101 TDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINFFVHIFFKE 152
DD+V +L ++NA G+TPL LAA + +VE L+ + ++
Sbjct: 26 QDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARD 77
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 25.8 bits (55), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 101 TDDDVILLRNRATNLNARMHDGTTPLILAARLA 133
DD+V +L ++NA G TPL LAAR+
Sbjct: 26 QDDEVRILMANGADVNAEDTYGDTPLHLAARVG 58
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.328 0.143 0.461
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,236,365
Number of Sequences: 62578
Number of extensions: 144114
Number of successful extensions: 518
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 371
Number of HSP's gapped (non-prelim): 132
length of query: 157
length of database: 14,973,337
effective HSP length: 91
effective length of query: 66
effective length of database: 9,278,739
effective search space: 612396774
effective search space used: 612396774
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.7 bits)