RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6362
(157 letters)
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell
cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A
2f8x_K 3nbn_B 3v79_K* 1ot8_A
Length = 253
Score = 53.6 bits (130), Expect = 1e-09
Identities = 41/109 (37%), Positives = 52/109 (47%), Gaps = 38/109 (34%)
Query: 35 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGIEHVCN 94
IL+RNRAT+L+ARMHDGTTPLILAARLA+EGM+EDLIN
Sbjct: 108 ILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLIN---------------------- 145
Query: 95 VLVILITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIN 143
+ A ++NA G + L AA + L+
Sbjct: 146 ---------------SHA-DVNAVDDLGKSALHWAAAVNNVDAAVVLLK 178
Score = 53.6 bits (130), Expect = 2e-09
Identities = 43/109 (39%), Positives = 54/109 (49%), Gaps = 38/109 (34%)
Query: 35 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGIEHVCN 94
LL A + N + + G TPL A +G+ +
Sbjct: 75 RLLEASA-DANIQDNMGRTPLHAAVSADAQGVFQ-------------------------- 107
Query: 95 VLVILITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIN 143
IL+RNRAT+L+ARMHDGTTPLILAARLA+EGM+EDLIN
Sbjct: 108 -----------ILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLIN 145
Score = 30.9 bits (71), Expect = 0.12
Identities = 19/101 (18%), Positives = 31/101 (30%), Gaps = 24/101 (23%)
Query: 43 NLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGIEHVCNVLVILITD 102
++N R DG TPL++A+ + V +
Sbjct: 2 DVNVRGPDGFTPLMIASC-------------SGGGLETGNSEEEEDAPAVIS-------- 40
Query: 103 DDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIN 143
+ A+ N G T L LAAR + + L+
Sbjct: 41 ---DFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLE 78
Score = 27.8 bits (63), Expect = 1.3
Identities = 21/109 (19%), Positives = 32/109 (29%), Gaps = 39/109 (35%)
Query: 35 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGIEHVCN 94
+LL+N A N + + + TPL LAAR +
Sbjct: 175 VLLKNGA-NKDMQNNREETPLFLAAREGSYETAK-------------------------- 207
Query: 95 VLVILITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIN 143
+LL + A N + H P +A +V L
Sbjct: 208 -----------VLLDHFA-NRDITDHMDRLPRDIAQERMHHDIVRLLDL 244
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin
repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A
1ymp_A
Length = 223
Score = 53.2 bits (129), Expect = 2e-09
Identities = 52/120 (43%), Positives = 68/120 (56%), Gaps = 27/120 (22%)
Query: 35 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLI---------NDFVCSPGLHDWFW 85
IL+RNRAT+L+ARMHDGTTPLILAARLA+EGM+EDLI +D S LH W
Sbjct: 76 ILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSA-LH---W 131
Query: 86 TLGIEHVCNVLVILITDDDV--ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIN 143
+ +V D +LL+N A N + + + TPL LAAR + L++
Sbjct: 132 AAAVNNV-----------DAAVVLLKNGA-NKDMQNNREETPLFLAAREGSYETAKVLLD 179
Score = 50.1 bits (121), Expect = 2e-08
Identities = 43/109 (39%), Positives = 54/109 (49%), Gaps = 38/109 (34%)
Query: 35 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGIEHVCN 94
LL A + N + + G TPL A +G+ +
Sbjct: 43 RLLEASA-DANIQDNMGRTPLHAAVSADAQGVFQ-------------------------- 75
Query: 95 VLVILITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIN 143
IL+RNRAT+L+ARMHDGTTPLILAARLA+EGM+EDLIN
Sbjct: 76 -----------ILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLIN 113
Score = 32.4 bits (75), Expect = 0.035
Identities = 21/108 (19%), Positives = 32/108 (29%), Gaps = 39/108 (36%)
Query: 35 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGIEHVCN 94
+LL+N A N + + + TPL LAAR +
Sbjct: 143 VLLKNGA-NKDMQNNREETPLFLAAREGSYETAK-------------------------- 175
Query: 95 VLVILITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLI 142
+LL + A N + H P +A +V L
Sbjct: 176 -----------VLLDHFA-NRDITDHMDRLPRDIAQERMHHDIVRLLD 211
Score = 28.1 bits (64), Expect = 0.89
Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 35 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLI-NDFVCSPGLH 81
+LL + A N + H P +A +V L + V SP LH
Sbjct: 176 VLLDHFA-NRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRSPQLH 222
Score = 26.6 bits (60), Expect = 3.3
Identities = 10/37 (27%), Positives = 15/37 (40%)
Query: 106 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLI 142
+ A+ N G T L LAAR + + L+
Sbjct: 9 DFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLL 45
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein
complex, transcription factors, nuclear localization,
DNA binding protein; 2.05A {Mus musculus} SCOP:
d.211.1.1 PDB: 1k3z_D
Length = 282
Score = 39.8 bits (94), Expect = 1e-04
Identities = 23/119 (19%), Positives = 35/119 (29%), Gaps = 12/119 (10%)
Query: 35 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLI----------NDFVCSPGLHDWF 84
L A + G T L LA R+ L+ +D +
Sbjct: 63 KLYAAGA-GVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTP 121
Query: 85 WTLGIEHVCNVLVILITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIN 143
T + +++ R L A +DG TPL +A MV L +
Sbjct: 122 DTSHAPAAVDSQPNPENEEEPRDEDWRL-QLEAENYDGHTPLHVAVIHKDAEMVRLLRD 179
Score = 36.0 bits (84), Expect = 0.003
Identities = 18/117 (15%), Positives = 27/117 (23%), Gaps = 36/117 (30%)
Query: 44 LNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGIEHVCNVLVILITDD 103
DG T L LA E ++ L + + + +D
Sbjct: 2 FGYVTEDGDTALHLAVIHQHEPFLDFL------------------LGFSAGHEYLDLQND 43
Query: 104 D-----------------VILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIN 143
L A + G T L LA R+ L+
Sbjct: 44 LGQTALHLAAILGEASTVEKLYAAGA-GVLVAERGGHTALHLACRVRAHTCACVLLQ 99
Score = 33.7 bits (78), Expect = 0.015
Identities = 29/120 (24%), Positives = 40/120 (33%), Gaps = 24/120 (20%)
Query: 34 VILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLI----------NDFVCSPGLHDW 83
+ L A +DG TPL +A MV L +P LH
Sbjct: 141 EPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTP-LH-- 197
Query: 84 FWTLGIEHVCNVLVILITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIN 143
L +E ++ L LL+ A + ARM+ G TPL A + L
Sbjct: 198 ---LAVEAQAASVLEL-------LLKAGA-DPTARMYGGRTPLGSALLRPNPILARLLRA 246
Score = 31.4 bits (72), Expect = 0.090
Identities = 15/97 (15%), Positives = 24/97 (24%), Gaps = 39/97 (40%)
Query: 35 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGIEHVCN 94
+LL+ A + ARM+ G TPL A +
Sbjct: 210 LLLKAGA-DPTARMYGGRTPLGSALLRPNPILAR-------------------------- 242
Query: 95 VLVILITDDDVILLRNRATNLNARMHDGTTPLILAAR 131
+L + A D +P +
Sbjct: 243 -----------LLRAHGA-PEPEDGGDKLSPCSSSGS 267
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix,
ankyrin repeat, gene regulation/signalling protein/DNA
complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Length = 373
Score = 39.6 bits (93), Expect = 2e-04
Identities = 23/122 (18%), Positives = 40/122 (32%), Gaps = 21/122 (17%)
Query: 27 ILITVDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLI---------NDFVCS 77
LI + + A ++NA D TPL+LA +V L+ N S
Sbjct: 143 DLIVHEAKECIAAGA-DVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERS 201
Query: 78 PGLHDWFWTLGIEHVCNVLVILITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGM 137
LH ++V ++ + ++ +G T L++ A
Sbjct: 202 A-LH---QAAANRDF-GMMVYMLNSTKLK------GDIEELDRNGMTALMIVAHNEGRDQ 250
Query: 138 VE 139
V
Sbjct: 251 VA 252
Score = 38.4 bits (90), Expect = 5e-04
Identities = 17/111 (15%), Positives = 35/111 (31%), Gaps = 29/111 (26%)
Query: 35 ILLRNRAT--NLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGIEHV 92
+L + ++ +G T L++ A V L +E
Sbjct: 217 YMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASA---------------KLLVEKG 261
Query: 93 CNVLVILITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIN 143
V + A ++ + G T L AA+++ +V+ L+
Sbjct: 262 AKVDY------------DGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVG 300
Score = 35.7 bits (83), Expect = 0.004
Identities = 19/118 (16%), Positives = 31/118 (26%), Gaps = 15/118 (12%)
Query: 34 VILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLI--------NDFVCSPGLHDWFW 85
+ L A + + E + + LH W
Sbjct: 77 GDFNHTNLQIPTEPEPESPIKLHTEAAGSYA-ITEPITRESVNIIDPRHNRTV-LH---W 131
Query: 86 TLGIEHVCNVLVILITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIN 143
LI + + A ++NA D TPL+LA +V L+
Sbjct: 132 IASNSSA-EKSEDLIVHEAKECIAAGA-DVNAMDCDENTPLMLAVLARRRRLVAYLMK 187
Score = 31.5 bits (72), Expect = 0.10
Identities = 17/109 (15%), Positives = 32/109 (29%), Gaps = 38/109 (34%)
Query: 35 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGIEHVCN 94
L+ + +N + + DG TP++LAA+ +V
Sbjct: 297 YLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVM-------------------------- 330
Query: 95 VLVILITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIN 143
L++ A ++ A T LA +V+
Sbjct: 331 -----------YLIQQGA-SVEAVDATDHTARQLAQANNHHNIVDIFDR 367
Score = 31.1 bits (71), Expect = 0.14
Identities = 7/105 (6%), Positives = 22/105 (20%), Gaps = 15/105 (14%)
Query: 39 NRATNLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGIEHVCNVLVI 98
+ + + L+ A+ + + + P + G + +
Sbjct: 25 EKNRKNHQSITSSQHSLLEASYDGYIKRQRNELQHYSLYP-NP-QGYGNGNDFL------ 76
Query: 99 LITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIN 143
+ L A + + E +
Sbjct: 77 ------GDFNHTNLQIPTEPEPESPIKLHTEAAGSYA-ITEPITR 114
Score = 27.6 bits (62), Expect = 1.9
Identities = 19/106 (17%), Positives = 37/106 (34%), Gaps = 37/106 (34%)
Query: 38 RNRATNLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGIEHVCNVLV 97
+ A ++ + G T L AA+++ +V+
Sbjct: 266 YDGAARKDSEKYKGRTALHYAAQVSNMPIVK----------------------------- 296
Query: 98 ILITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIN 143
L+ + +N + + DG TP++LAA+ +V LI
Sbjct: 297 --------YLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQ 334
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1,
ankyrin repeat domain, transport protein; HET: ATP;
2.70A {Rattus norvegicus} PDB: 2nyj_A*
Length = 273
Score = 38.2 bits (89), Expect = 4e-04
Identities = 18/111 (16%), Positives = 33/111 (29%), Gaps = 24/111 (21%)
Query: 35 ILLRNRAT--NLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGIEHV 92
LL+N +++AR G T L +A ++ V + + +
Sbjct: 166 FLLQNSWQPADISARDSVGNTVLHALVEVA---------DNTVDNTKFVTSMYNEILILG 216
Query: 93 CNVLVILITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIN 143
+ G TPL LAA G++ ++
Sbjct: 217 AKLH-------------PTLKLEEITNRKGLTPLALAASSGKIGVLAYILQ 254
Score = 28.6 bits (64), Expect = 0.75
Identities = 18/114 (15%), Positives = 35/114 (30%), Gaps = 27/114 (23%)
Query: 43 NLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGIEHVCNVLVILITD 102
+ + G T L +A +V L+ E+ +V
Sbjct: 93 SYTDSYYKGQTALHIAIERRNMTLVTLLV------------------ENGADVQA---AA 131
Query: 103 DDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINFFVHIFFKENINK 156
+ + T + G PL LAA +V+ L+ + + +I+
Sbjct: 132 NGDFF---KKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQ---NSWQPADISA 179
Score = 25.5 bits (56), Expect = 9.0
Identities = 15/114 (13%), Positives = 31/114 (27%), Gaps = 27/114 (23%)
Query: 31 VDDVILLRNRATNLNARMHD-GTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGI 89
+ + + R T+ + + G T L+ A G
Sbjct: 33 LPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNG------------------------ 68
Query: 90 EHVCNVLVILITDDDVILLRNRAT-NLNARMHDGTTPLILAARLAIEGMVEDLI 142
+ ++L L+ + + G T L +A +V L+
Sbjct: 69 -QNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLV 121
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase
(M130), serine/threonine protein phosphatase PP1-beta
(OR delta) catalytic subunit; myosin phosphatase; HET:
PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Length = 299
Score = 38.2 bits (90), Expect = 4e-04
Identities = 22/109 (20%), Positives = 39/109 (35%), Gaps = 12/109 (11%)
Query: 35 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGIEHVCN 94
L+ A ++ A +G TPL +A A+E ++++ +N D E
Sbjct: 124 YLISQGA-HVGAVNSEGDTPLDIAEEEAMEELLQNEVNR-----QGVDIEAARKEEERIM 177
Query: 95 VLVILITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIN 143
+ L + N G T L +AA +++ LI
Sbjct: 178 LRDA------RQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQ 220
Score = 35.2 bits (82), Expect = 0.005
Identities = 29/122 (23%), Positives = 47/122 (38%), Gaps = 34/122 (27%)
Query: 36 LLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLH--------DWFWT- 86
LL A ++N DG T L A MV+ L+ + + W
Sbjct: 59 LLERGA-DINYANVDGLTALHQACIDDNVDMVKFLVE--------NGANINQPDNEGWIP 109
Query: 87 LGIEHV---CNVLVILITDDDV--ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDL 141
L H C L D+ L+ A ++ A +G TPL +A A+E ++++
Sbjct: 110 L---HAAASCGYL-------DIAEYLISQGA-HVGAVNSEGDTPLDIAEEEAMEELLQNE 158
Query: 142 IN 143
+N
Sbjct: 159 VN 160
Score = 32.1 bits (74), Expect = 0.055
Identities = 19/109 (17%), Positives = 32/109 (29%), Gaps = 39/109 (35%)
Query: 35 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGIEHVCN 94
+L++ R ++N + +DG TPL AA E
Sbjct: 217 LLIQARY-DVNIKDYDGWTPLHAAAHWGKEEACR-------------------------- 249
Query: 95 VLVILITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIN 143
IL+ N ++ A G T +A + + E
Sbjct: 250 -----------ILVENLC-DMEAVNKVGQTAFDVADEDILGYLEELQKK 286
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural
genomics of pathogenic protozoa consortium, SGPP, ANK
repeat; 2.90A {Leishmania major}
Length = 364
Score = 38.3 bits (90), Expect = 5e-04
Identities = 17/126 (13%), Positives = 41/126 (32%), Gaps = 35/126 (27%)
Query: 35 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGIEHVCN 94
IL++ A + A+ TPL+ A ++ +++ L
Sbjct: 158 ILVQLGA-SPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLR------------- 203
Query: 95 VLVILITDDD-----------------VILLRNRATNLNARMHDGTTPLILAARLAIEGM 137
+ + + + ++N ++ T PL L+ R A+ +
Sbjct: 204 ---LDYANKQGNSHLHWAILINWEDVAMRFVEMGI-DVNMEDNEHTVPLYLSVRAAMVLL 259
Query: 138 VEDLIN 143
++L+
Sbjct: 260 TKELLQ 265
Score = 38.3 bits (90), Expect = 5e-04
Identities = 14/125 (11%), Positives = 38/125 (30%), Gaps = 25/125 (20%)
Query: 35 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGIEHVCN 94
+ ++N ++ T PL L+ R A+ + ++L+ + + N
Sbjct: 229 RFVEMGI-DVNMEDNEHTVPLYLSVRAAMVLLTKELLQ--------KTDVFLIQACPYHN 279
Query: 95 VLVILITDDD----------------VILLRNRATNLNARMHDGTTPLILAARLAIEGMV 138
+L + LL+ + + ++ G + + A +
Sbjct: 280 GTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVK 339
Query: 139 EDLIN 143
+
Sbjct: 340 RMKLA 344
Score = 29.5 bits (67), Expect = 0.38
Identities = 17/103 (16%), Positives = 33/103 (32%), Gaps = 27/103 (26%)
Query: 50 DGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWT-------LGIEHVCNVLVILITD 102
G P L + E + H T LG E++
Sbjct: 110 RGQMPESLLNECDEREVNEIGSHV------KHCKGQTALHWCVGLGPEYL---------- 153
Query: 103 DDVI--LLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIN 143
++I L++ A + A+ TPL+ A ++ +++
Sbjct: 154 -EMIKILVQLGA-SPTAKDKADETPLMRAMEFRNREALDLMMD 194
Score = 27.9 bits (63), Expect = 1.4
Identities = 14/101 (13%), Positives = 22/101 (21%), Gaps = 38/101 (37%)
Query: 43 NLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGIEHVCNVLVILITD 102
N + + +AAR V LI E +
Sbjct: 12 NRIKSDDENMEKIHVAARKGQTDEVRRLI------------------ETGVSP------- 46
Query: 103 DDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIN 143
+ G T L LA + + L +
Sbjct: 47 -------------TIQNRFGCTALHLACKFGCVDTAKYLAS 74
Score = 27.1 bits (61), Expect = 2.3
Identities = 13/109 (11%), Positives = 22/109 (20%), Gaps = 41/109 (37%)
Query: 35 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGIEHVCN 94
L+ + + G T L LA + +
Sbjct: 38 RLIETGV-SPTIQNRFGCTALHLACKFGCVDTAK-------------------------- 70
Query: 95 VLVILITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIN 143
L + G P+ LA +V L+
Sbjct: 71 -----------YLASVGE-VHSLW--HGQKPIHLAVMANKTDLVVALVE 105
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch,
ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB:
3ixe_A 2kbx_A
Length = 179
Score = 37.0 bits (87), Expect = 8e-04
Identities = 32/118 (27%), Positives = 45/118 (38%), Gaps = 23/118 (19%)
Query: 35 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLI---------NDFVCSPGLHDWFW 85
+ L N +LN G +PL A R +VE LI N +P LH
Sbjct: 23 LWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTP-LH---- 77
Query: 86 TLGIEHVCNVLVILITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIN 143
L H +V LL+ +A ++NA G PL A + + EDL+
Sbjct: 78 -LAASHGHRDIVQK-------LLQYKA-DINAVNEHGNVPLHYACFWGQDQVAEDLVA 126
Score = 33.9 bits (79), Expect = 0.010
Identities = 19/109 (17%), Positives = 30/109 (27%), Gaps = 39/109 (35%)
Query: 35 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGIEHVCN 94
LL+ +A ++NA G PL A + + EDL+
Sbjct: 90 KLLQYKA-DINAVNEHGNVPLHYACFWGQDQVAEDLVA---------------------- 126
Query: 95 VLVILITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIN 143
N A ++ G P+ A E + E
Sbjct: 127 ---------------NGA-LVSICNKYGEMPVDKAKAPLRELLRERAEK 159
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A
{Enterococcus faecalis}
Length = 201
Score = 36.7 bits (86), Expect = 0.001
Identities = 23/118 (19%), Positives = 42/118 (35%), Gaps = 19/118 (16%)
Query: 35 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLI----------NDFVCSPGLHDWF 84
+L++ +LN G LI AA V+ L+ NDF + L +
Sbjct: 90 YMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTA-LIEAV 148
Query: 85 WTLGIEHVCNVLVILITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLI 142
+ +V L L+ N A + + + + G T + A + + + L
Sbjct: 149 GLREGNQLYQDIVKL-------LMENGA-DQSIKDNSGRTAMDYANQKGYTEISKILA 198
Score = 35.5 bits (83), Expect = 0.003
Identities = 21/121 (17%), Positives = 39/121 (32%), Gaps = 26/121 (21%)
Query: 34 VILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLI---------NDFVCSPGLHDWF 84
+L++ ++ +G TPL +A + + LI N SP
Sbjct: 22 KEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSP-YL--- 77
Query: 85 WTLGIEHVCNVLVILITDDDV--ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLI 142
+ ++ +L++ +LN G LI AA V+ L+
Sbjct: 78 YAGAQGRT-----------EILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLL 126
Query: 143 N 143
Sbjct: 127 E 127
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit);
transcription factor, IKB/NFKB complex; 2.30A {Homo
sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Length = 236
Score = 36.4 bits (85), Expect = 0.001
Identities = 20/122 (16%), Positives = 28/122 (22%), Gaps = 39/122 (31%)
Query: 35 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGIEHVCN 94
+ + A LN + + TPL LA + E L + C+
Sbjct: 30 QVKGDLA-FLNFQNNLQQTPLHLAVITNQPEIAEAL------------------LGAGCD 70
Query: 95 VLVILITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINFFVHIFFKENI 154
R G TPL LA V L +
Sbjct: 71 P--------------------ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSIL 110
Query: 155 NK 156
Sbjct: 111 KA 112
Score = 34.8 bits (81), Expect = 0.006
Identities = 25/115 (21%), Positives = 42/115 (36%), Gaps = 24/115 (20%)
Query: 39 NRATNLNARMHDGTTPLILAARLAIEGMVEDLI----------NDFVCSPGLHDWFWTLG 88
+ + L A ++G T L LA+ G+VE L+ + LH L
Sbjct: 105 HLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTA-LH-----LA 158
Query: 89 IEHVCNVLVILITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIN 143
++ LV L LL+ A ++N + G +P L + + L
Sbjct: 159 VDLQNPDLVSL-------LLKCGA-DVNRVTYQGYSPYQLTWGRPSTRIQQQLGQ 205
Score = 33.3 bits (77), Expect = 0.017
Identities = 24/121 (19%), Positives = 36/121 (29%), Gaps = 33/121 (27%)
Query: 35 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGIEHVCN 94
LL + R G TPL LA V L +
Sbjct: 63 ALLGAGC-DPELRDFRGNTPLHLACEQGCLASVGVL------------------TQSCTT 103
Query: 95 VLVILITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINFFVHIFFKENI 154
+ + L A ++G T L LA+ G+VE L++ + +E
Sbjct: 104 P--------------HLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPC 149
Query: 155 N 155
N
Sbjct: 150 N 150
Score = 32.9 bits (76), Expect = 0.029
Identities = 8/38 (21%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 35 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIN 72
+LL+ A ++N + G +P L + + L
Sbjct: 169 LLLKCGA-DVNRVTYQGYSPYQLTWGRPSTRIQQQLGQ 205
>2etb_A Transient receptor potential cation channel subfamily V member 2;
TRPV2, ankyrin repeat domain, transport protein; 1.65A
{Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Length = 256
Score = 36.7 bits (85), Expect = 0.002
Identities = 19/111 (17%), Positives = 31/111 (27%), Gaps = 24/111 (21%)
Query: 35 ILLRNRAT--NLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGIEHV 92
LL N +L A G T L +A ++ + L + ++
Sbjct: 154 YLLENPHQPASLEATDSLGNTVLHALVMIA---------DNSPENSALVIHMYDGLLQMG 204
Query: 93 CNVLVILITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIN 143
L H G TPL LAA+ + ++
Sbjct: 205 ------------ARLCPTVQ-LEEISNHQGLTPLKLAAKEGKIEIFRHILQ 242
Score = 32.5 bits (74), Expect = 0.045
Identities = 9/39 (23%), Positives = 13/39 (33%)
Query: 34 VILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIN 72
L H G TPL LAA+ + ++
Sbjct: 204 GARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQ 242
Score = 26.3 bits (58), Expect = 5.1
Identities = 13/106 (12%), Positives = 25/106 (23%), Gaps = 24/106 (22%)
Query: 38 RNRATNLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGIEHVCNVLV 97
+ + G T L+ A +G+ L+
Sbjct: 30 KYLTDSAYTEGSTGKTCLMKAVLNLQDGVNA-----------------------CIMPLL 66
Query: 98 ILITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIN 143
+ D A + G + L +A V+ L+
Sbjct: 67 QIDKDSGNPKPLVNA-QCTDEFYQGHSALHIAIEKRSLQCVKLLVE 111
Score = 25.9 bits (57), Expect = 5.4
Identities = 16/100 (16%), Positives = 27/100 (27%), Gaps = 25/100 (25%)
Query: 43 NLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGIEHVCNVLVILITD 102
+ G + L +A V+ L+ E+ +V
Sbjct: 82 QCTDEFYQGHSALHIAIEKRSLQCVKLLV------------------ENGADV------- 116
Query: 103 DDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLI 142
R + + G PL LAA +V L+
Sbjct: 117 HLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLL 156
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati midwest center F or structural
genomics, MCSG; 1.77A {Leptotrichia buccalis}
Length = 186
Score = 35.8 bits (83), Expect = 0.002
Identities = 11/124 (8%), Positives = 33/124 (26%), Gaps = 23/124 (18%)
Query: 35 ILLRNRATNLNARMHDGTTPLILAAR------LAIEGMVEDLI---------NDFVCSPG 79
L+ A ++ +R +GTT + + + +
Sbjct: 60 FLINKGA-DIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIV- 117
Query: 80 LHDWFWTLGIEHVCNVLVILITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVE 139
+ + ++ + + ++ L + G T L R ++
Sbjct: 118 VFKNIFNYFVDENEMIPLY------KLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALK 171
Query: 140 DLIN 143
+ +
Sbjct: 172 MMED 175
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC,
rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens}
PDB: 3uxg_A
Length = 172
Score = 35.1 bits (82), Expect = 0.003
Identities = 26/123 (21%), Positives = 37/123 (30%), Gaps = 33/123 (26%)
Query: 35 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLI---------NDFVCSPGLHDWFW 85
LR +N G TPLI A+ V L+ S L
Sbjct: 20 EHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESA-LS---L 75
Query: 86 TLGIEHVCNVLVILITDDDV--ILLRNRATNLNARMHDGTTPLILAARLAIEG---MVED 140
+ D+ +LL ++N +G TPL+ A R VE
Sbjct: 76 ASTGGYT-----------DIVGLLLERDV-DINIYDWNGGTPLLYAVR---GNHVKCVEA 120
Query: 141 LIN 143
L+
Sbjct: 121 LLA 123
Score = 33.9 bits (79), Expect = 0.009
Identities = 21/109 (19%), Positives = 32/109 (29%), Gaps = 39/109 (35%)
Query: 35 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGIEHVCN 94
+LL ++N +G TPL+ A R V+
Sbjct: 87 LLLERDV-DINIYDWNGGTPLLYAVR---GNHVK-----------------------CVE 119
Query: 95 VLVILITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIN 143
LL A +L G TP+ LA L + + + N
Sbjct: 120 -----------ALLARGA-DLTTEADSGYTPMDLAVALGYRKVQQVIEN 156
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium,
SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo
sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Length = 167
Score = 35.1 bits (82), Expect = 0.004
Identities = 21/108 (19%), Positives = 34/108 (31%), Gaps = 28/108 (25%)
Query: 35 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLI---------NDFVCSPGLHDWFW 85
+ +N +G TPL+ AA +VE L+ S L
Sbjct: 21 TRIEQEN-VINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESA-LS---L 75
Query: 86 TLGIEHVCNVLVILITDDDV--ILLRNRATNLNARMHDGTTPLILAAR 131
+ D+ +LL ++N +G TPL+ A
Sbjct: 76 ACSKGYT-----------DIVKMLLDCGV-DVNEYDWNGGTPLLYAVH 111
Score = 31.2 bits (72), Expect = 0.070
Identities = 16/112 (14%), Positives = 30/112 (26%), Gaps = 45/112 (40%)
Query: 35 ILLRNRATNLNARMHDGTTPLILAARLAIEG---MVEDLINDFVCSPGLHDWFWTLGIEH 91
+LL ++N +G TPL+ A V+
Sbjct: 87 MLLDCGV-DVNEYDWNGGTPLLYAVH---GNHVKCVK----------------------- 119
Query: 92 VCNVLVILITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIN 143
+LL + A + G + LA L + + + +
Sbjct: 120 --------------MLLESGA-DPTIETDSGYNSMDLAVALGYRSVQQVIES 156
Score = 30.4 bits (70), Expect = 0.13
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 106 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIN 143
+ +N +G TPL+ AA +VE L+
Sbjct: 21 TRIEQEN-VINHTDEEGFTPLMWAAAHGQIAVVEFLLQ 57
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A;
1.80A {Homo sapiens} SCOP: d.211.1.1
Length = 285
Score = 35.1 bits (82), Expect = 0.005
Identities = 27/120 (22%), Positives = 44/120 (36%), Gaps = 20/120 (16%)
Query: 33 DVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLI----------NDFVCSPGLHD 82
+V L R + G T L+ AA +++ L+ ++ + L
Sbjct: 130 NVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNA-LI- 187
Query: 83 WFWTLGIEHVCNVLVILITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLI 142
L +V I LL + ++N R G TPLILA G+V+ L+
Sbjct: 188 --HALLSSDDSDVEAI------THLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLL 239
Score = 32.4 bits (75), Expect = 0.043
Identities = 26/109 (23%), Positives = 37/109 (33%), Gaps = 38/109 (34%)
Query: 35 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGIEHVCN 94
+LL + A ++N R G TPLILA G+V+
Sbjct: 204 LLLDHGA-DVNVRGERGKTPLILAVEKKHLGLVQ-------------------------- 236
Query: 95 VLVILITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIN 143
LL +N DG T L+LA L ++ + E L
Sbjct: 237 -----------RLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCK 274
Score = 31.7 bits (73), Expect = 0.072
Identities = 23/130 (17%), Positives = 36/130 (27%), Gaps = 33/130 (25%)
Query: 35 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLI----------NDFVCSPGLHDWF 84
+ L A ++N G T + AA ++ L L
Sbjct: 90 LFLSKGA-DVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGG 148
Query: 85 WT-------LGIEHVCNVLVILITDDDVILLRNRATNLNARMHDGTTPLILAAR----LA 133
T G V ILL ++NA + G LI A
Sbjct: 149 ATALMDAAEKGHVEVLK-----------ILLDEMGADVNACDNMGRNALIHALLSSDDSD 197
Query: 134 IEGMVEDLIN 143
+E + L++
Sbjct: 198 VEAITHLLLD 207
Score = 30.5 bits (70), Expect = 0.17
Identities = 20/106 (18%), Positives = 40/106 (37%), Gaps = 28/106 (26%)
Query: 50 DGTTPLILAARLAIEGMVEDLI----------NDFVCSPGLHDWFWTLGIEHVCNVLVIL 99
+ LI A + +V+ L+ + +P LH + +
Sbjct: 4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTP-LH---NAVQMSRE------- 52
Query: 100 ITDDDVI--LLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIN 143
D++ LLR+ A + R +G TP +LAA +++ ++
Sbjct: 53 ----DIVELLLRHGA-DPVLRKKNGATPFLLAAIAGSVKLLKLFLS 93
Score = 29.4 bits (67), Expect = 0.38
Identities = 23/119 (19%), Positives = 43/119 (36%), Gaps = 16/119 (13%)
Query: 35 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLI---------NDFVCSPGLHDWFW 85
+LLR+ A + R +G TP +LAA +++ + + + +
Sbjct: 57 LLLRHGA-DPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTA-FM---E 111
Query: 86 TLGIEHVCNVLVILITDD-DVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIN 143
V L L +V L R + G T L+ AA +++ L++
Sbjct: 112 AAVYGKV-KALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLD 169
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats,
cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP:
d.211.1.1
Length = 327
Score = 35.0 bits (80), Expect = 0.006
Identities = 22/120 (18%), Positives = 40/120 (33%), Gaps = 13/120 (10%)
Query: 36 LLRNRATNLNARMHDGTTPL------------ILAARLAIEGMVEDLINDFVCSPGLHDW 83
LL L T L AA+ ++ ++ ++
Sbjct: 186 LLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTN 245
Query: 84 FWTLGIEHVCNVLVILITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIN 143
+ N +++ L A LNA+ +G T L +AARL +V+ L++
Sbjct: 246 EKESKP-NDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLD 304
Score = 30.0 bits (67), Expect = 0.26
Identities = 15/53 (28%), Positives = 27/53 (50%)
Query: 20 HVCNVLVILITVDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIN 72
+ N ++++ L A LNA+ +G T L +AARL +V+ L++
Sbjct: 252 NDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLD 304
Score = 27.3 bits (60), Expect = 2.1
Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 107 LLRNRATNLNARM-HDGTTPLILAARLAIEGMVEDLINFFVHIFFKEN 153
N NLN + G TPL +A +V+ L+ + + +N
Sbjct: 115 AFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDN 162
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein;
2.70A {Homo sapiens} SCOP: d.211.1.1
Length = 437
Score = 34.8 bits (81), Expect = 0.007
Identities = 26/109 (23%), Positives = 34/109 (31%), Gaps = 39/109 (35%)
Query: 35 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGIEHVCN 94
LL+ + NA G TPL LAA+ MV
Sbjct: 230 SLLQYGG-SANAESVQGVTPLHLAAQEGHAEMVA-------------------------- 262
Query: 95 VLVILITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIN 143
+LL +A N N G TPL L A+ + + LI
Sbjct: 263 -----------LLLSKQA-NGNLGNKSGLTPLHLVAQEGHVPVADVLIK 299
Score = 33.6 bits (78), Expect = 0.015
Identities = 30/112 (26%), Positives = 47/112 (41%), Gaps = 27/112 (24%)
Query: 43 NLNARMHDGTTPLILAARLAIEGMVEDLI---------NDFVCSPGLHDWFWTLGIEHVC 93
+ G TPL +A+ + +V++L+ N V +P LH H
Sbjct: 6 SGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETP-LH---MAARAGHT- 60
Query: 94 NVLVILITDDDVI--LLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIN 143
+V LL+N+A +NA+ D TPL AAR+ MV+ L+
Sbjct: 61 ----------EVAKYLLQNKA-KVNAKAKDDQTPLHCAARIGHTNMVKLLLE 101
Score = 32.9 bits (76), Expect = 0.031
Identities = 29/122 (23%), Positives = 47/122 (38%), Gaps = 24/122 (19%)
Query: 35 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLI---------NDFVCSPGLHDWFW 85
+L+++ ++A G TPL +A+ +V+ L+ SP LH
Sbjct: 296 VLIKHGV-MVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSP-LH-QAA 352
Query: 86 TLGIEHVCNVLVILITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINFF 145
G + +LL+N A + N DGTTPL +A RL + + L
Sbjct: 353 QQGHTDIVT-----------LLLKNGA-SPNEVSSDGTTPLAIAKRLGYISVTDVLKVVT 400
Query: 146 VH 147
Sbjct: 401 DE 402
Score = 32.5 bits (75), Expect = 0.047
Identities = 29/118 (24%), Positives = 47/118 (39%), Gaps = 24/118 (20%)
Query: 35 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLI---------NDFVCSPGLHDWFW 85
+LL +A N N G TPL L A+ + + LI +P LH
Sbjct: 263 LLLSKQA-NGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTP-LH---V 317
Query: 86 TLGIEHVCNVLVILITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIN 143
++ V LL+++A ++NA+ G +PL AA+ +V L+
Sbjct: 318 ASHYGNIKLV---------KFLLQHQA-DVNAKTKLGYSPLHQAAQQGHTDIVTLLLK 365
Score = 32.5 bits (75), Expect = 0.048
Identities = 28/124 (22%), Positives = 41/124 (33%), Gaps = 36/124 (29%)
Query: 35 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLH--------DWFWT 86
+LL A + NA +G TPL +A +V+ L+ +T
Sbjct: 164 LLLERDA-HPNAAGKNGLTPLHVAVHHNNLDIVKLLLP--------RGGSPHSPAWNGYT 214
Query: 87 -------LGIEHVCNVLVILITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVE 139
V LL+ + NA G TPL LAA+ MV
Sbjct: 215 PLHIAAKQNQVEVAR-----------SLLQYGG-SANAESVQGVTPLHLAAQEGHAEMVA 262
Query: 140 DLIN 143
L++
Sbjct: 263 LLLS 266
Score = 32.1 bits (74), Expect = 0.051
Identities = 28/109 (25%), Positives = 38/109 (34%), Gaps = 39/109 (35%)
Query: 35 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGIEHVCN 94
LL+N+A +NA+ D TPL AAR+ MV+ L +E+ N
Sbjct: 65 YLLQNKA-KVNAKAKDDQTPLHCAARIGHTNMVKLL------------------LENNAN 105
Query: 95 VLVILITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIN 143
N G TPL +AAR V L+
Sbjct: 106 P--------------------NLATTAGHTPLHIAAREGHVETVLALLE 134
Score = 30.9 bits (71), Expect = 0.15
Identities = 32/120 (26%), Positives = 43/120 (35%), Gaps = 28/120 (23%)
Query: 35 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLI---------NDFVCSPGLHDWFW 85
+LL N A N N G TPL +AAR V L+ +P LH
Sbjct: 98 LLLENNA-NPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTP-LH---V 152
Query: 86 TLGIEHVCNVLVILITDDDV--ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIN 143
V V +LL A + NA +G TPL +A +V+ L+
Sbjct: 153 AAKYGKV-----------RVAELLLERDA-HPNAAGKNGLTPLHVAVHHNNLDIVKLLLP 200
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT
signaling, POL ribosylation, transferase-signaling
protein complex; 2.00A {Mus musculus}
Length = 351
Score = 34.4 bits (80), Expect = 0.009
Identities = 13/113 (11%), Positives = 28/113 (24%), Gaps = 23/113 (20%)
Query: 35 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWT-LGIEHVC 93
+LL + A + G + + +A + + + L
Sbjct: 142 LLLSHGA-DPTLVNCHGKSAVDMAPTPELRERLTYEFKG-----------HSLLQAAREA 189
Query: 94 NVLVILITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEG---MVEDLIN 143
++ + L N + T L A + E L+
Sbjct: 190 DLAKV------KKTLALEIIN-FKQPQSHETALHCAVASLHPKRKQVAELLLR 235
Score = 34.0 bits (79), Expect = 0.011
Identities = 24/109 (22%), Positives = 36/109 (33%), Gaps = 39/109 (35%)
Query: 35 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGIEHVCN 94
+LLR A N+N + D TPL +AA A ++E
Sbjct: 232 LLLRKGA-NVNEKNKDFMTPLHVAAERAHNDVME-------------------------- 264
Query: 95 VLVILITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIN 143
+L ++ A +NA G T L AA L++
Sbjct: 265 -----------VLHKHGA-KMNALDSLGQTALHRAALAGHLQTCRLLLS 301
Score = 32.1 bits (74), Expect = 0.050
Identities = 20/109 (18%), Positives = 33/109 (30%), Gaps = 39/109 (35%)
Query: 35 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGIEHVCN 94
+LL++ A +NA TPL AA + VE VCS
Sbjct: 109 LLLKHGA-CVNAMDLWQFTPLHEAAS---KNRVE------VCS----------------- 141
Query: 95 VLVILITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIN 143
+LL + A + G + + +A + +
Sbjct: 142 -----------LLLSHGA-DPTLVNCHGKSAVDMAPTPELRERLTYEFK 178
Score = 30.9 bits (71), Expect = 0.16
Identities = 21/110 (19%), Positives = 35/110 (31%), Gaps = 38/110 (34%)
Query: 34 VILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGIEHVC 93
+ LL N +A +TPL LAA +V+
Sbjct: 41 MALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQ------------------------- 75
Query: 94 NVLVILITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIN 143
+LL++ A +++A+ G PL A + E L+
Sbjct: 76 ------------LLLQHGA-DVHAKDKGGLVPLHNACSYGHYEVTELLLK 112
Score = 30.2 bits (69), Expect = 0.22
Identities = 19/113 (16%), Positives = 30/113 (26%), Gaps = 35/113 (30%)
Query: 31 VDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGIE 90
+ V + T L A +
Sbjct: 191 LAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQ---------------------- 228
Query: 91 HVCNVLVILITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIN 143
+ + +LLR A N+N + D TPL +AA A ++E L
Sbjct: 229 ---------VAE---LLLRKGA-NVNEKNKDFMTPLHVAAERAHNDVMEVLHK 268
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin
repeat, signaling protein; NMR {Mus musculus} SCOP:
i.11.1.1
Length = 136
Score = 33.6 bits (78), Expect = 0.009
Identities = 20/109 (18%), Positives = 33/109 (30%), Gaps = 30/109 (27%)
Query: 35 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLI----------NDFVCSPGLHDWF 84
LL A + NA G P+ + + + + E L+ + P +H
Sbjct: 30 QLLEAGA-DPNALNRFGRRPIQVMMMGSAQ-VAELLLLHGAEPNCADPATLTRP-VH--- 83
Query: 85 WTLGIEHVCNVLVILITDDDV--ILLRNRATNLNARMHDGTTPLILAAR 131
+ D +L R A L+ G P+ LA
Sbjct: 84 DAAREGFL-----------DTLVVLHRAGA-RLDVCDAWGRLPVDLAEE 120
Score = 31.3 bits (72), Expect = 0.053
Identities = 11/89 (12%), Positives = 16/89 (17%), Gaps = 38/89 (42%)
Query: 43 NLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGIEHVCNVLVILITD 102
++ L AA V
Sbjct: 4 GIHMLGGSSDAGLATAAARGQVETVR---------------------------------- 29
Query: 103 DDVILLRNRATNLNARMHDGTTPLILAAR 131
LL A + NA G P+ +
Sbjct: 30 ---QLLEAGA-DPNALNRFGRRPIQVMMM 54
Score = 27.8 bits (63), Expect = 0.95
Identities = 5/30 (16%), Positives = 8/30 (26%)
Query: 114 NLNARMHDGTTPLILAARLAIEGMVEDLIN 143
++ L AA V L+
Sbjct: 4 GIHMLGGSSDAGLATAAARGQVETVRQLLE 33
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat,
alternative splicing, ANK repeat, chromatin regulator,
nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP:
k.37.1.1 PDB: 3b95_A*
Length = 237
Score = 33.5 bits (78), Expect = 0.015
Identities = 24/125 (19%), Positives = 41/125 (32%), Gaps = 37/125 (29%)
Query: 35 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGIEHVCN 94
LL N ++N + G TP+I A +V+ L + +
Sbjct: 95 YLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLL------------------LSKGSD 136
Query: 95 VLVILITDDD----------------VILLRNRATNLNARMHDGTTPLILAARLAIEGMV 138
I I D++ +L +L+A G +PL +AAR V
Sbjct: 137 ---INIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCV 193
Query: 139 EDLIN 143
++
Sbjct: 194 VLFLS 198
Score = 33.2 bits (77), Expect = 0.022
Identities = 18/97 (18%), Positives = 32/97 (32%), Gaps = 38/97 (39%)
Query: 35 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGIEHVCN 94
L++ A ++ + +G+T L LAA+ +V+
Sbjct: 62 YLIKAGA-LVDPKDAEGSTCLHLAAKKGHYEVVQ-------------------------- 94
Query: 95 VLVILITDDDVILLRNRATNLNARMHDGTTPLILAAR 131
LL N ++N + G TP+I A
Sbjct: 95 -----------YLLSNGQMDVNCQDDGGWTPMIWATE 120
Score = 29.7 bits (68), Expect = 0.32
Identities = 18/108 (16%), Positives = 32/108 (29%), Gaps = 39/108 (36%)
Query: 35 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGIEHVCN 94
ILL + +L+A G +PL +AAR V
Sbjct: 162 ILLAAKC-DLHAVNIHGDSPLHIAARENRYDCVV-------------------------- 194
Query: 95 VLVILITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLI 142
+ L + ++ + +G TPL A+ + +
Sbjct: 195 -----------LFLSRDS-DVTLKNKEGETPLQCASLNSQVWSALQMS 230
Score = 29.3 bits (67), Expect = 0.42
Identities = 19/111 (17%), Positives = 40/111 (36%), Gaps = 27/111 (24%)
Query: 43 NLNARMHDGTTPLILAARLAIEGMVEDLI---------NDFVCSPGLHDWFWTLGIEHVC 93
N + +PL AA + L+ ++ +P L H+
Sbjct: 3 NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTP-LM---EAAENNHL- 57
Query: 94 NVLVILITDDDVI--LLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLI 142
+ + L++ A ++ + +G+T L LAA+ +V+ L+
Sbjct: 58 ----------EAVKYLIKAGA-LVDPKDAEGSTCLHLAAKKGHYEVVQYLL 97
Score = 27.0 bits (61), Expect = 2.3
Identities = 6/30 (20%), Positives = 10/30 (33%)
Query: 114 NLNARMHDGTTPLILAARLAIEGMVEDLIN 143
N + +PL AA + L+
Sbjct: 3 NFKMEHQNKRSPLHAAAEAGHVDICHMLVQ 32
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR
{Escherichia coli}
Length = 115
Score = 32.7 bits (76), Expect = 0.015
Identities = 26/97 (26%), Positives = 35/97 (36%), Gaps = 39/97 (40%)
Query: 35 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGIEHVCN 94
LL A ++NAR DG TPL LAA+ +V+ L+
Sbjct: 27 KLLSKGA-DVNARSKDGNTPLHLAAKNGHAEIVKLLLA---------------------- 63
Query: 95 VLVILITDDDVILLRNRATNLNARMHDGTTPLILAAR 131
A ++NAR DG TP LA +
Sbjct: 64 ---------------KGA-DVNARSKDGNTPEHLAKK 84
Score = 29.7 bits (68), Expect = 0.19
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 106 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIN 143
LL A ++NAR DG TPL LAA+ +V+ L+
Sbjct: 27 KLLSKGA-DVNARSKDGNTPLHLAAKNGHAEIVKLLLA 63
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix,
SH3, ankyrin repeat, signaling protein, ANK repeat,
cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB:
3ehq_A
Length = 222
Score = 33.4 bits (77), Expect = 0.016
Identities = 22/121 (18%), Positives = 35/121 (28%), Gaps = 29/121 (23%)
Query: 35 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLI----------NDFVCSPGLHD-- 82
L NR +N G+T L A + +VE L N + LH
Sbjct: 91 ECLDNRV-GVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTA-LHAAA 148
Query: 83 WFWTLGIEHVCNVLVILITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLI 142
W G + +LL A + R + +A A +++
Sbjct: 149 WK---GYADIVQ-----------LLLAKGA-RTDLRNIEKKLAFDMATNAACASLLKKKQ 193
Query: 143 N 143
Sbjct: 194 G 194
Score = 31.4 bits (72), Expect = 0.088
Identities = 16/113 (14%), Positives = 26/113 (23%), Gaps = 21/113 (18%)
Query: 36 LLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPG---LHDWFWTLGIEHV 92
L ++ T G++ LH ++
Sbjct: 31 LYIEEG-DIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQAESIDNPLH---EAAKRGNL 86
Query: 93 CNVLVILITDDDV--ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIN 143
L NR +N G+T L A + +VE L
Sbjct: 87 -----------SWLRECLDNRV-GVNGLDKAGSTALYWACHGGHKDIVEMLFT 127
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6
ATPase, P-benzoyl-L-phenylalanine, PBPA, amber
suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A
2dwz_A* 1tr4_A 1uoh_A 1qym_A
Length = 231
Score = 33.3 bits (76), Expect = 0.018
Identities = 21/119 (17%), Positives = 43/119 (36%), Gaps = 6/119 (5%)
Query: 35 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGIEHVCN 94
LL+ +N + G +PL +AA + +V+ L+ ++ T +
Sbjct: 58 FLLQLGV-PVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCT-----PLH 111
Query: 95 VLVILITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINFFVHIFFKEN 153
+ ++L N +A+ H T + AA MV L+ + ++
Sbjct: 112 YAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDT 170
Score = 28.7 bits (64), Expect = 0.62
Identities = 18/119 (15%), Positives = 33/119 (27%), Gaps = 39/119 (32%)
Query: 35 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGIEHVCN 94
+L +++ D T L A +VE
Sbjct: 25 RILADKS-LATRTDQDSRTALHWACSAGHTEIVE-------------------------- 57
Query: 95 VLVILITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINFFVHIFFKEN 153
LL+ +N + G +PL +AA + +V+ L+ H+
Sbjct: 58 -----------FLLQLGV-PVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQ 104
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP:
k.37.1.1
Length = 93
Score = 31.9 bits (74), Expect = 0.021
Identities = 26/97 (26%), Positives = 38/97 (39%), Gaps = 39/97 (40%)
Query: 35 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGIEHVCN 94
+LL A ++NA+ +G TPL LAAR +V+ L+
Sbjct: 20 LLLEAGA-DVNAKDKNGRTPLHLAARNGHLEVVKLLLE---------------------- 56
Query: 95 VLVILITDDDVILLRNRATNLNARMHDGTTPLILAAR 131
A ++NA+ +G TPL LAAR
Sbjct: 57 ---------------AGA-DVNAKDKNGRTPLHLAAR 77
Score = 28.5 bits (65), Expect = 0.31
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 106 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIN 143
+LL A ++NA+ +G TPL LAAR +V+ L+
Sbjct: 20 LLLEAGA-DVNAKDKNGRTPLHLAARNGHLEVVKLLLE 56
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase,
cyclin dependent kinase inhibitory protein, CDK, cell
cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A
1dc2_A 2a5e_A
Length = 156
Score = 32.4 bits (75), Expect = 0.023
Identities = 24/109 (22%), Positives = 33/109 (30%), Gaps = 30/109 (27%)
Query: 35 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLI----------NDFVCSPGLHD-- 82
LL A N NA G P+ + + + E L+ + P +HD
Sbjct: 30 ALLEAGA-NPNAPNSYGRRPIQVMMMGSAR-VAELLLLHGAEPNCADPATLTRP-VHDAA 86
Query: 83 WFWTLGIEHVCNVLVILITDDDVILLRNRATNLNARMHDGTTPLILAAR 131
G VL R A L+ R G P+ LA
Sbjct: 87 RE---GFLDTLVVL-----------HRAGA-RLDVRDAWGRLPVDLAEE 120
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.6 bits (73), Expect = 0.025
Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 8/34 (23%)
Query: 38 RNRATNLNARMH---DGTTPLILAARLAIEGMVE 68
+ L A + D + P A LAI+ +E
Sbjct: 19 KQALKKLQASLKLYADDSAP----A-LAIKATME 47
Score = 32.6 bits (73), Expect = 0.025
Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 8/34 (23%)
Query: 109 RNRATNLNARMH---DGTTPLILAARLAIEGMVE 139
+ L A + D + P A LAI+ +E
Sbjct: 19 KQALKKLQASLKLYADDSAP----A-LAIKATME 47
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle
inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A
1mx2_A 1mx6_A
Length = 162
Score = 32.4 bits (75), Expect = 0.027
Identities = 24/120 (20%), Positives = 40/120 (33%), Gaps = 27/120 (22%)
Query: 35 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLI---------NDFVCSPGLHDWFW 85
LL A N + + G + AAR ++ L+ ++ P LH
Sbjct: 55 RLLLRGA-NPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLP-LH---L 109
Query: 86 TLGIEHVCNVLVILITDDDV--ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIN 143
H+ V L+++ A+N+ R H G T LA +V +
Sbjct: 110 AAKEGHL-----------RVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQA 158
Score = 28.9 bits (66), Expect = 0.50
Identities = 17/108 (15%), Positives = 29/108 (26%), Gaps = 40/108 (37%)
Query: 35 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGIEHVCN 94
LL+N N+NA+ G T L + E + L + N
Sbjct: 23 SLLQNNV-NVNAQNGFGRTALQVMKLGNPE-IARRL------------------LLRGAN 62
Query: 95 VLVILITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLI 142
+ + G + AAR ++ L+
Sbjct: 63 P--------------------DLKDRTGFAVIHDAARAGFLDTLQTLL 90
Score = 27.0 bits (61), Expect = 1.9
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 106 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIN 143
LL+N N+NA+ G T L + E + L+
Sbjct: 23 SLLQNNV-NVNAQNGFGRTALQVMKLGNPE-IARRLLL 58
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription
regulation, autoantibody; 2.58A {Homo sapiens}
Length = 261
Score = 32.8 bits (76), Expect = 0.028
Identities = 19/109 (17%), Positives = 27/109 (24%), Gaps = 39/109 (35%)
Query: 35 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGIEHVCN 94
L+ +N D +PL A V+
Sbjct: 21 NLISQGW-AVNIITADHVSPLHEACLGGHLSCVK-------------------------- 53
Query: 95 VLVILITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIN 143
ILL++ A +N D TPL A V L+
Sbjct: 54 -----------ILLKHGA-QVNGVTADWHTPLFNACVSGSWDCVNLLLQ 90
Score = 31.6 bits (73), Expect = 0.075
Identities = 26/119 (21%), Positives = 40/119 (33%), Gaps = 27/119 (22%)
Query: 35 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIN--------DFVCSPGLHDWFWT 86
ILL++ A +N D TPL A V L+ + SP +H
Sbjct: 54 ILLKHGA-QVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASP-IH---EA 108
Query: 87 LGIEHVCNVLVILITDDDV--ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIN 143
HV + L+ N++ ++ TPL LA V+ L+
Sbjct: 109 ARRGHV-----------ECVNSLIAYGG-NIDHKISHLGTPLYLACENQQRACVKKLLE 155
Score = 28.9 bits (66), Expect = 0.57
Identities = 10/119 (8%), Positives = 25/119 (21%), Gaps = 46/119 (38%)
Query: 35 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGIEHVCN 94
+L+ A + A+ +G P+ L E +
Sbjct: 184 LLMDFGA-DTQAKNAEGKRPVELVPP---ES-------------------------PLAQ 214
Query: 95 VLVILITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLI-----NFFVHI 148
+ L + + + ++ F +H+
Sbjct: 215 -----------LFLEREG-PPSLMQLCRLRIRKCFGIQQHHKITKLVLPEDLKQFLLHL 261
Score = 28.9 bits (66), Expect = 0.58
Identities = 21/105 (20%), Positives = 33/105 (31%), Gaps = 23/105 (21%)
Query: 35 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLI--------NDFVCSPGLHDWFWT 86
L+ N++ ++ TPL LA V+ L+ SP LH
Sbjct: 119 SLIAYGG-NIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQDSP-LH----- 171
Query: 87 LGIEHVCNVLVILITDDDVILLRNRATNLNARMHDGTTPLILAAR 131
L L L+ A + A+ +G P+ L
Sbjct: 172 AVARTASEELACL-------LMDFGA-DTQAKNAEGKRPVELVPP 208
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin
repeat Pro ribosome display, apoptosis; 1.80A {Synthetic
source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D*
3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B*
2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Length = 169
Score = 32.3 bits (75), Expect = 0.028
Identities = 32/109 (29%), Positives = 42/109 (38%), Gaps = 39/109 (35%)
Query: 35 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGIEHVCN 94
IL+ N A ++NA G TPL LAA +VE
Sbjct: 32 ILMANGA-DVNAEDASGWTPLHLAAFNGHLEIVE-------------------------- 64
Query: 95 VLVILITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIN 143
+LL+N A ++NA H G TPL LAA +VE L+
Sbjct: 65 -----------VLLKNGA-DVNAVDHAGMTPLRLAALFGHLEIVEVLLK 101
Score = 30.4 bits (70), Expect = 0.13
Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 28/119 (23%)
Query: 35 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLI---------NDFVCSPGLHDWFW 85
+LL+N A ++NA H G TPL LAA +VE L+ + +P LH
Sbjct: 65 VLLKNGA-DVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTP-LH---L 119
Query: 86 TLGIEHVCNVLVILITDDDV--ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLI 142
H+ ++ +LL+N A ++NA+ G T ++ E + E L
Sbjct: 120 AAMFGHL-----------EIVEVLLKNGA-DVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat,
chromodomain, aromatic CAGE, signal recognit particle,
protein targeting; 3.18A {Arabidopsis thaliana} PDB:
1x3q_A 2hug_A
Length = 244
Score = 33.0 bits (76), Expect = 0.029
Identities = 22/126 (17%), Positives = 36/126 (28%), Gaps = 30/126 (23%)
Query: 43 NLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGL------HDWFWT-------LGI 89
+++A +G T L+ A L + V L G T
Sbjct: 69 DVDAVDENGRTALLFVAGLGSDKCVRLLA-----EAGADLDHRDMRGGLTALHMAAGYVR 123
Query: 90 EHVCNVLVILITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINFFVHIF 149
V L + A ++ G T L LA + + + F I
Sbjct: 124 PEVVEAL-----------VELGA-DIEVEDERGLTALELAREILKTTPKGNPMQFGRRIG 171
Query: 150 FKENIN 155
++ IN
Sbjct: 172 LEKVIN 177
Score = 31.4 bits (72), Expect = 0.076
Identities = 18/110 (16%), Positives = 31/110 (28%), Gaps = 42/110 (38%)
Query: 34 VILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGIEHVC 93
+ A ++ + + TP AAR A E + L+ D
Sbjct: 31 WVPSSYIAADVVS---EYETPWWTAARKADEQALSQLLED-------------------- 67
Query: 94 NVLVILITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIN 143
+++A +G T L+ A L + V L
Sbjct: 68 -------------------RDVDAVDENGRTALLFVAGLGSDKCVRLLAE 98
Score = 29.9 bits (68), Expect = 0.28
Identities = 7/37 (18%), Positives = 13/37 (35%), Gaps = 1/37 (2%)
Query: 35 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLI 71
L+ A ++ G T L LA + + +
Sbjct: 129 ALVELGA-DIEVEDERGLTALELAREILKTTPKGNPM 164
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6,
ankyrin reapeat, ANK RE calcium channel, calcium
transport, calmodulin-binding; 1.70A {Mus musculus}
Length = 232
Score = 32.6 bits (75), Expect = 0.031
Identities = 15/109 (13%), Positives = 31/109 (28%), Gaps = 29/109 (26%)
Query: 35 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGIEHVCN 94
+L+ + A ++ A+ G T L + + + N L + +
Sbjct: 139 LLIEHGA-DIRAQDSLGNTVLHILILQPNKTFACQMYN--------------LLLSYDGG 183
Query: 95 VLVILITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIN 143
+ + + G TP LA M + L+
Sbjct: 184 D--------------HLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQ 218
Score = 28.7 bits (65), Expect = 0.70
Identities = 16/107 (14%), Positives = 31/107 (28%), Gaps = 33/107 (30%)
Query: 36 LLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGIEHVCNV 95
LL+ ++ R G T L +AA L +E +
Sbjct: 22 LLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVL------------------MEAAPEL 63
Query: 96 LVILITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLI 142
+ + + +++G T L +A +V L+
Sbjct: 64 V---------------FEPMTSELYEGQTALHIAVINQNVNLVRALL 95
Score = 25.6 bits (57), Expect = 6.7
Identities = 10/54 (18%), Positives = 19/54 (35%), Gaps = 3/54 (5%)
Query: 19 EHVCNVLVILITVDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIN 72
C + +L++ D + + + G TP LA M + L+
Sbjct: 168 TFACQMYNLLLSYDGGD---HLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQ 218
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin
repeats, ANK repeat, ION transport, ionic channel, R
transmembrane, transport; 2.30A {Gallus gallus} PDB:
3jxj_A
Length = 260
Score = 32.8 bits (75), Expect = 0.031
Identities = 24/119 (20%), Positives = 39/119 (32%), Gaps = 16/119 (13%)
Query: 40 RATNLNARMHDGTTPLILAARLAIEGMVEDLIN--DFVCSPGLHDWF-WT-----LGIEH 91
+ + + G PL LAA +V L D T + I
Sbjct: 129 QPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIAD 188
Query: 92 VCNVLVILITDDDVILLRNRATNLNARM-------HDGTTPLILAARLAIEGMVEDLIN 143
+T +LL A L +DG +PL++AA+ G+ + +I
Sbjct: 189 NTRENTKFVTKMYDLLLIKCA-KLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIR 246
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP:
k.37.1.1
Length = 126
Score = 31.5 bits (73), Expect = 0.043
Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 39/97 (40%)
Query: 35 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGIEHVCN 94
+LL A ++NA+ +G TPL LAAR +V+
Sbjct: 20 LLLEAGA-DVNAKDKNGRTPLHLAARNGHLEVVK-------------------------- 52
Query: 95 VLVILITDDDVILLRNRATNLNARMHDGTTPLILAAR 131
+LL A ++NA+ +G TPL LAAR
Sbjct: 53 -----------LLLEAGA-DVNAKDKNGRTPLHLAAR 77
Score = 30.0 bits (69), Expect = 0.14
Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 39/97 (40%)
Query: 35 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGIEHVCN 94
+LL A ++NA+ +G TPL LAAR +V+
Sbjct: 53 LLLEAGA-DVNAKDKNGRTPLHLAARNGHLEVVK-------------------------- 85
Query: 95 VLVILITDDDVILLRNRATNLNARMHDGTTPLILAAR 131
+LL A ++NA+ +G TPL LAAR
Sbjct: 86 -----------LLLEAGA-DVNAKDKNGRTPLHLAAR 110
Score = 28.5 bits (65), Expect = 0.52
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 106 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLI 142
+LL A ++NA+ +G TPL LAAR +V+ L+
Sbjct: 20 LLLEAGA-DVNAKDKNGRTPLHLAARNGHLEVVKLLL 55
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium,
SGC, metal binding protein; 2.06A {Homo sapiens}
Length = 301
Score = 31.9 bits (72), Expect = 0.057
Identities = 21/120 (17%), Positives = 37/120 (30%), Gaps = 46/120 (38%)
Query: 36 LLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGIEHVCNV 95
+++N +L+A+ DG T L AA ++
Sbjct: 212 IIQNGG-HLDAKAADGNTALHYAALYNQPDCLK--------------------------- 243
Query: 96 LVILITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLI-------NFFVHI 148
+LL+ RA + G T L +A + + E L F +H+
Sbjct: 244 ----------LLLKGRA-LVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFAFPLHV 292
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.3 bits (73), Expect = 0.060
Identities = 22/130 (16%), Positives = 40/130 (30%), Gaps = 40/130 (30%)
Query: 52 TTPLILAARLAI------EGMVEDLINDFVCSPGLHDWFWTLGIE---HVC--NVLVILI 100
T P + A +G++ + G H +LG E +V+ I
Sbjct: 1732 TQPALTLMEKAAFEDLKSKGLIPA--DATFA--G-H----SLG-EYAALASLADVMSI-- 1779
Query: 101 TDDDVILLRNR---ATNLNARMHDGTTPLILAA----RLAIEGMVEDLINFFVHIFFKE- 152
+ V ++ R R G + + A R+A ++ + + V K
Sbjct: 1780 -ESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAA-SFSQEALQYVVERVGKRT 1837
Query: 153 -------NIN 155
N N
Sbjct: 1838 GWLVEIVNYN 1847
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats,
metal binding protein; 2.10A {Mus musculus} SCOP:
d.211.1.1 g.45.1.1
Length = 278
Score = 31.9 bits (72), Expect = 0.063
Identities = 24/125 (19%), Positives = 37/125 (29%), Gaps = 45/125 (36%)
Query: 31 VDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGIE 90
+ V L + NL+ + G+T L ++
Sbjct: 185 LHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLK---------------------- 222
Query: 91 HVCNVLVILITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLI-------N 143
+LLR +A ++ G TPL +A RL E E L N
Sbjct: 223 ---------------LLLRGKA-SIEIANESGETPLDIAKRLKHEHCEELLTQALSGRFN 266
Query: 144 FFVHI 148
VH+
Sbjct: 267 SHVHV 271
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription
factors, ikappab proteins; 1.86A {Homo sapiens} SCOP:
d.211.1.1 PDB: 1k1b_A
Length = 241
Score = 31.7 bits (73), Expect = 0.077
Identities = 18/109 (16%), Positives = 39/109 (35%), Gaps = 39/109 (35%)
Query: 35 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGIEHVCN 94
+LL++ A N+NA+M+ G++ L A+ + +V
Sbjct: 168 LLLQHGA-NVNAQMYSGSSALHSASGRGLLPLVR-------------------------- 200
Query: 95 VLVILITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIN 143
L+R+ A + + + TPL++A + ++
Sbjct: 201 -----------TLVRSGA-DSSLKNCHNDTPLMVARSRRVIDILRGKAT 237
Score = 30.9 bits (71), Expect = 0.11
Identities = 17/100 (17%), Positives = 26/100 (26%), Gaps = 34/100 (34%)
Query: 44 LNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGIEHVCNVLVILITDD 103
DG TPL +A V L+N
Sbjct: 2 ATRADEDGDTPLHIAVVQGNLPAVHRLVN------------------------------- 30
Query: 104 DVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIN 143
+ + L+ + TPL LA + +V L+
Sbjct: 31 --LFQQGGR-ELDIYNNLRQTPLHLAVITTLPSVVRLLVT 67
Score = 29.7 bits (68), Expect = 0.28
Identities = 25/113 (22%), Positives = 40/113 (35%), Gaps = 25/113 (22%)
Query: 43 NLNARMHDGTTPLILAARLAIEGMVEDLI---------NDFVCSPGLHDWFWTLGIEHVC 93
L+ + TPL LA + +V L+ + + H L EH
Sbjct: 38 ELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTA-AH-----LACEHRS 91
Query: 94 NVLVILITDDDVILLRNRA---TNLNARMHDGTTPLILAARLAIEGMVEDLIN 143
+ LL + A +L AR +DG T L +A + V+ L+
Sbjct: 92 PTCLRA-------LLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLE 137
Score = 29.0 bits (66), Expect = 0.55
Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 27/121 (22%)
Query: 35 ILLRNRA---TNLNARMHDGTTPLILAARLAIEGMVEDLI----------NDFVCSPGLH 81
LL + A +L AR +DG T L +A + V+ L+ SP L
Sbjct: 97 ALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSP-LI 155
Query: 82 DWFWTLGIEHVCNVLVILITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDL 141
+E+ +V L LL++ A N+NA+M+ G++ L A+ + +V L
Sbjct: 156 -----HAVENNSLSMVQL-------LLQHGA-NVNAQMYSGSSALHSASGRGLLPLVRTL 202
Query: 142 I 142
+
Sbjct: 203 V 203
Score = 25.5 bits (57), Expect = 8.3
Identities = 10/33 (30%), Positives = 12/33 (36%)
Query: 115 LNARMHDGTTPLILAARLAIEGMVEDLINFFVH 147
DG TPL +A V L+N F
Sbjct: 2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQ 34
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats,
methyllyine binding, huntingti interacting protein 14,
acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo
sapiens}
Length = 240
Score = 31.3 bits (72), Expect = 0.081
Identities = 22/118 (18%), Positives = 38/118 (32%), Gaps = 25/118 (21%)
Query: 35 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLI----------NDFVCSPGLHDWF 84
L+ ++ + T L AA +V+ I D +P LH
Sbjct: 27 ELVEAGY-DVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTP-LH--- 81
Query: 85 WTLGIEHVCNVLVILITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLI 142
W H+ V+ L + + +G + + LAA+ +V LI
Sbjct: 82 WATRQGHL----------SMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLI 129
Score = 30.9 bits (71), Expect = 0.12
Identities = 10/89 (11%), Positives = 19/89 (21%), Gaps = 38/89 (42%)
Query: 43 NLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGIEHVCNVLVILITD 102
++ T ++ A + I +L +E +V
Sbjct: 1 HMTHIDDYSTWDIVKATQYGIYERCREL------------------VEAGYDV------- 35
Query: 103 DDVILLRNRATNLNARMHDGTTPLILAAR 131
+ T L AA
Sbjct: 36 -------------RQPDKENVTLLHWAAI 51
Score = 28.6 bits (65), Expect = 0.72
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 35 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIN 72
+LL A N++A+ G + L LA + M+ L
Sbjct: 195 LLLEAGA-NVDAQNIKGESALDLAKQRKNVWMINHLQE 231
Score = 28.6 bits (65), Expect = 0.72
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 106 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIN 143
+LL A N++A+ G + L LA + M+ L
Sbjct: 195 LLLEAGA-NVDAQNIKGESALDLAKQRKNVWMINHLQE 231
Score = 28.6 bits (65), Expect = 0.76
Identities = 14/97 (14%), Positives = 29/97 (29%), Gaps = 39/97 (40%)
Query: 35 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGIEHVCN 94
L++ A + + +G + + LAA+ +V
Sbjct: 94 QLMKYGA-DPSLIDGEGCSCIHLAAQFGHTSIVA-------------------------- 126
Query: 95 VLVILITDDDVILLRNRATNLNARMHDGTTPLILAAR 131
L+ +++ +G TPL+ AA
Sbjct: 127 -----------YLIAKGQ-DVDMMDQNGMTPLMWAAY 151
Score = 28.2 bits (64), Expect = 0.92
Identities = 4/30 (13%), Positives = 11/30 (36%)
Query: 114 NLNARMHDGTTPLILAARLAIEGMVEDLIN 143
++ T ++ A + I +L+
Sbjct: 1 HMTHIDDYSTWDIVKATQYGIYERCRELVE 30
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system,
signal sequence, ankyrin repeat, chromodomain, type I
turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2
k.37.1.1 PDB: 3dep_A 1x32_A
Length = 183
Score = 30.9 bits (71), Expect = 0.11
Identities = 20/111 (18%), Positives = 31/111 (27%), Gaps = 40/111 (36%)
Query: 35 ILLRNRATNLNAR-MHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGIEHVC 93
+L A +L+ R M G T L +AA +VE
Sbjct: 94 LLAEAGA-DLDHRDMRGGLTALHMAAGYVRPEVVE------------------------- 127
Query: 94 NVLVILITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINF 144
L+ A ++ G T L LA + + + F
Sbjct: 128 ------------ALVELGA-DIEVEDERGLTALELAREILKTTPKGNPMQF 165
Score = 29.0 bits (66), Expect = 0.49
Identities = 18/109 (16%), Positives = 31/109 (28%), Gaps = 42/109 (38%)
Query: 34 VILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGIEHVC 93
+ A ++ + + TP AAR A E + L+ D
Sbjct: 30 WVPSSYIAADVVS---EYETPWWTAARKADEQALSQLLED-------------------- 66
Query: 94 NVLVILITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLI 142
+++A +G T L+ A L + V L
Sbjct: 67 -------------------RDVDAVDENGRTALLFVAGLGSDKCVRLLA 96
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and
SOCS box-containing...; ASB9, ANK repeat, L-shaped,
structural protein; 2.20A {Homo sapiens}
Length = 285
Score = 30.9 bits (71), Expect = 0.11
Identities = 19/109 (17%), Positives = 27/109 (24%), Gaps = 39/109 (35%)
Query: 35 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGIEHVCN 94
L+ +N D +PL A V+
Sbjct: 77 NLISQGW-AVNIITADHVSPLHEACLGGHLSCVK-------------------------- 109
Query: 95 VLVILITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIN 143
ILL++ A +N D TPL A V L+
Sbjct: 110 -----------ILLKHGA-QVNGVTADWHTPLFNACVSGSWDCVNLLLQ 146
Score = 29.8 bits (68), Expect = 0.35
Identities = 25/117 (21%), Positives = 38/117 (32%), Gaps = 23/117 (19%)
Query: 35 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIN--------DFVCSPGLHDWFWT 86
ILL++ A +N D TPL A V L+ + SP +H
Sbjct: 110 ILLKHGA-QVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASP-IH----- 162
Query: 87 LGIEHVCNVLVILITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIN 143
V L+ N++ ++ TPL LA V+ L+
Sbjct: 163 EAARRGHVECVNS-------LIAYGG-NIDHKISHLGTPLYLACENQQRACVKKLLE 211
Score = 29.4 bits (67), Expect = 0.38
Identities = 21/105 (20%), Positives = 34/105 (32%), Gaps = 23/105 (21%)
Query: 35 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLI--------NDFVCSPGLHDWFWT 86
L+ N++ ++ TPL LA V+ L+ SP LH
Sbjct: 175 SLIAYGG-NIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQDSP-LH----- 227
Query: 87 LGIEHVCNVLVILITDDDVILLRNRATNLNARMHDGTTPLILAAR 131
+ L L L+ A + A+ +G P+ L
Sbjct: 228 AVVRTASEELACL-------LMDFGA-DTQAKNAEGKRPVELVPP 264
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat,
helix, extended loop, four repeat, PR ANK repeat,
disease mutation, metal-binding; 2.00A {Homo sapiens}
SCOP: k.37.1.1
Length = 137
Score = 30.5 bits (70), Expect = 0.12
Identities = 16/109 (14%), Positives = 34/109 (31%), Gaps = 39/109 (35%)
Query: 35 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGIEHVCN 94
+LL+++A +N + +PL AA+ +V+
Sbjct: 61 LLLQHKA-LVNTTGYQNDSPLHDAAKNGHVDIVK-------------------------- 93
Query: 95 VLVILITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIN 143
+LL A + NA G P+ +++ ++
Sbjct: 94 -----------LLLSYGA-SRNAVNIFGLRPVDYTDDESMKSLLLLPEK 130
Score = 30.1 bits (69), Expect = 0.14
Identities = 20/97 (20%), Positives = 33/97 (34%), Gaps = 39/97 (40%)
Query: 35 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGIEHVCN 94
LL+N + + N + H G TPL A +VE
Sbjct: 28 YLLQNGS-DPNVKDHAGWTPLHEACNHGHLKVVE-------------------------- 60
Query: 95 VLVILITDDDVILLRNRATNLNARMHDGTTPLILAAR 131
+LL+++A +N + +PL AA+
Sbjct: 61 -----------LLLQHKA-LVNTTGYQNDSPLHDAAK 85
Score = 27.8 bits (63), Expect = 1.0
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 106 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIN 143
LL+N + + N + H G TPL A +VE L+
Sbjct: 28 YLLQNGS-DPNVKDHAGWTPLHEACNHGHLKVVELLLQ 64
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.4 bits (70), Expect = 0.12
Identities = 23/196 (11%), Positives = 58/196 (29%), Gaps = 59/196 (30%)
Query: 1 MNVVGSPGLHDWFWTLGI--EHV---CNVLVIL------ITVDDVI-------LLRNRAT 42
+NV+ F L + +L ++ V V+ L+ +
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK 422
Query: 43 NLNARMHDGTTPLILAARLAIEGMVE---DLINDFV---------CSPGLHD--WFWTLG 88
+ + L ++ +E +++ + P D ++ +G
Sbjct: 423 ESTISIPS----IYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG 478
Query: 89 IEHVCNV--------LVILITDDDVIL--LRNRATNLNARMHDGTTPLILAARL------ 132
H+ N+ ++ D + +R+ +T NA + +
Sbjct: 479 -HHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNAS--GSILNTLQQLKFYKPYIC 535
Query: 133 ----AIEGMVEDLINF 144
E +V +++F
Sbjct: 536 DNDPKYERLVNAILDF 551
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein
binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Length = 192
Score = 30.8 bits (71), Expect = 0.13
Identities = 17/100 (17%), Positives = 30/100 (30%), Gaps = 38/100 (38%)
Query: 43 NLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGIEHVCNVLVILITD 102
L + +G+T LI A + G+ E L++
Sbjct: 60 KLEDKDIEGSTALIWAVKNNRLGIAEKLLS------------------------------ 89
Query: 103 DDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLI 142
+ N+N + G TPL+ + M L+
Sbjct: 90 -------KGS-NVNTKDFSGKTPLMWSIIFGYSEMSYFLL 121
Score = 30.1 bits (69), Expect = 0.18
Identities = 18/100 (18%), Positives = 33/100 (33%), Gaps = 38/100 (38%)
Query: 44 LNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGIEHVCNVLVILITDD 103
N R TPL++A L +E ++ L+ E+ +
Sbjct: 28 RNYRDSYNRTPLMVACMLGMENAIDKLV------------------ENFDKL-------- 61
Query: 104 DVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIN 143
+ +G+T LI A + G+ E L++
Sbjct: 62 ------------EDKDIEGSTALIWAVKNNRLGIAEKLLS 89
Score = 28.9 bits (66), Expect = 0.53
Identities = 23/108 (21%), Positives = 37/108 (34%), Gaps = 39/108 (36%)
Query: 35 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGIEHVCN 94
LL + N+N + G TPL+ + M
Sbjct: 86 KLLSKGS-NVNTKDFSGKTPLMWSIIFGYSEMSY-------------------------- 118
Query: 95 VLVILITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLI 142
LL + A N+N R +G TPLI+A++ +V+ L+
Sbjct: 119 -----------FLLEHGA-NVNDRNLEGETPLIVASKYGRSEIVKKLL 154
Score = 28.5 bits (65), Expect = 0.62
Identities = 21/108 (19%), Positives = 36/108 (33%), Gaps = 39/108 (36%)
Query: 35 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGIEHVCN 94
LL + A N+N R +G TPLI+A++ +V+
Sbjct: 119 FLLEHGA-NVNDRNLEGETPLIVASKYGRSEIVK-------------------------- 151
Query: 95 VLVILITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLI 142
LL A +++AR G T A + +++
Sbjct: 152 -----------KLLELGA-DISARDLTGLTAEASARIFGRQEVIKIFT 187
Score = 26.2 bits (59), Expect = 4.6
Identities = 4/24 (16%), Positives = 9/24 (37%)
Query: 120 HDGTTPLILAARLAIEGMVEDLIN 143
+G + +I ++ L N
Sbjct: 6 KNGEIVEKIKDEKSINQNLDFLRN 29
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate
recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo
sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A
3twq_A 3twu_A 2y0i_S*
Length = 165
Score = 30.0 bits (69), Expect = 0.17
Identities = 19/109 (17%), Positives = 31/109 (28%), Gaps = 38/109 (34%)
Query: 35 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGIEHVCN 94
L ++ N +TPL AA +VE
Sbjct: 26 KLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVE-------------------------- 59
Query: 95 VLVILITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIN 143
LL++ A +++A+ G PL A + E L+
Sbjct: 60 -----------YLLQHGA-DVHAKDKGGLVPLHNACSYGHYEVAELLVK 96
Score = 29.3 bits (67), Expect = 0.33
Identities = 25/120 (20%), Positives = 46/120 (38%), Gaps = 29/120 (24%)
Query: 35 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLI---------NDFVCSPGLHD--W 83
LL++ A +++A+ G PL A + E L+ + + +P LH+
Sbjct: 60 YLLQHGA-DVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTP-LHEAAA 117
Query: 84 FWTLGIEHVCNVLVILITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIN 143
G +C +LL++ A + + DG TPL L + + + L
Sbjct: 118 K---GKYEICK-----------LLLQHGA-DPTKKNRDGNTPLDLVKDGDTD-IQDLLRG 161
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Length = 156
Score = 30.1 bits (69), Expect = 0.18
Identities = 21/112 (18%), Positives = 36/112 (32%), Gaps = 46/112 (41%)
Query: 35 ILLRNRATNLNARMHDGTTPLILAARLAIEG---MVEDLINDFVCSPGLHDWFWTLGIEH 91
+L+ + A ++N G P+ LA + EG +V
Sbjct: 86 VLVEHGA-DVNVPDGTGALPIHLAVQ---EGHTAVVS----------------------- 118
Query: 92 VCNVLVILITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIN 143
L + +L+ R G TPL LA + + +V+ L
Sbjct: 119 ---------------FLAAES-DLHRRDARGLTPLELALQRGAQDLVDILQG 154
Score = 28.9 bits (66), Expect = 0.51
Identities = 17/110 (15%), Positives = 30/110 (27%), Gaps = 39/110 (35%)
Query: 34 VILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGIEHVC 93
LL + +A G T L + + +
Sbjct: 19 RRLLHRELVHPDALNRFGKTALQVMMFGSTA-IAL------------------------- 52
Query: 94 NVLVILITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIN 143
LL+ A + N + GT+P+ AAR ++ L+
Sbjct: 53 ------------ELLKQGA-SPNVQDTSGTSPVHDAARTGFLDTLKVLVE 89
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor,
cytoplasm, phosphorylation, P53 binding protein, ANK
repeat, SH3 domain; 2.10A {Homo sapiens}
Length = 229
Score = 30.3 bits (69), Expect = 0.19
Identities = 18/112 (16%), Positives = 30/112 (26%), Gaps = 18/112 (16%)
Query: 35 ILLRNRATNLNAR-MHDGTTPLILAARLA--IEGMVEDLI----NDFVCSPGLHDWFWTL 87
L+++ A + A + DG T L + + + G W
Sbjct: 105 ALVQHGA-AIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDY 163
Query: 88 GIEHVCNVLVILITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVE 139
E D++ + + R T AA EG V
Sbjct: 164 SAEFG----------DELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVP 205
Score = 28.4 bits (64), Expect = 0.89
Identities = 17/109 (15%), Positives = 29/109 (26%), Gaps = 39/109 (35%)
Query: 35 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGIEHVCN 94
++ + + +G T L A A +V+
Sbjct: 39 QAVKEMN-DPSQPNEEGITALHNAICGANYSIVD-------------------------- 71
Query: 95 VLVILITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIN 143
L+ A N+N+ G TPL AA + L+
Sbjct: 72 -----------FLITAGA-NVNSPDSHGWTPLHCAASCNDTVICMALVQ 108
Score = 28.0 bits (63), Expect = 1.0
Identities = 8/39 (20%), Positives = 12/39 (30%)
Query: 30 TVDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVE 68
D++ + + R T AA EG V
Sbjct: 167 FGDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVP 205
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo
protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Length = 110
Score = 29.5 bits (67), Expect = 0.21
Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Query: 35 ILLRNRATNLNARMHDGTTPLILAAR 60
IL+ N A ++ A+ +G+TPL LAAR
Sbjct: 42 ILMANGA-DVAAKDKNGSTPLHLAAR 66
Score = 29.5 bits (67), Expect = 0.21
Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Query: 106 ILLRNRATNLNARMHDGTTPLILAAR 131
IL+ N A ++ A+ +G+TPL LAAR
Sbjct: 42 ILMANGA-DVAAKDKNGSTPLHLAAR 66
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats,
A-helical domain, structural genomics, NPPSFA; 2.20A
{Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A
1ixv_A 1wg0_A
Length = 228
Score = 29.7 bits (68), Expect = 0.31
Identities = 16/126 (12%), Positives = 33/126 (26%), Gaps = 41/126 (32%)
Query: 35 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGIEHVCN 94
L+ N A ++ + PL AA + ++E L +
Sbjct: 125 FLIENGA-SVRIKDKFNQIPLHRAASVGSLKLIELLC------------------GLGKS 165
Query: 95 VLVILITDDD-----------------VILLRNRATNLNARMHDGTTPLILAARLAIEGM 137
+ D V+L+ + + G +A E +
Sbjct: 166 A--VNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN---EQV 220
Query: 138 VEDLIN 143
+ +N
Sbjct: 221 KKFFLN 226
Score = 29.3 bits (67), Expect = 0.35
Identities = 23/127 (18%), Positives = 36/127 (28%), Gaps = 37/127 (29%)
Query: 35 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGIEHVCN 94
+L + L + DG PL + + L+ + N
Sbjct: 21 LLHSKPS-LLLQKDQDGRIPLHWSVSFQAHEITSFLL------------------SKMEN 61
Query: 95 VLVILITDDD----------------VILLRNRAT--NLNARMHDGTTPLILAARLAIEG 136
V + DD V L +R +LN + G T L LA
Sbjct: 62 VNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFE 121
Query: 137 MVEDLIN 143
+ + LI
Sbjct: 122 VSQFLIE 128
Score = 29.0 bits (66), Expect = 0.55
Identities = 17/101 (16%), Positives = 27/101 (26%), Gaps = 38/101 (37%)
Query: 43 NLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGIEHVCNVLVILITD 102
+LN + G T L LA + + LI E+ +V
Sbjct: 99 DLNKITNQGVTCLHLAVGKKWFEVSQFLI------------------ENGASV------- 133
Query: 103 DDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIN 143
+ PL AA + ++E L
Sbjct: 134 -------------RIKDKFNQIPLHRAASVGSLKLIELLCG 161
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping,
inhibition, prote binding, actin capping, actin-binding,
cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A
2kxp_C 2myo_A
Length = 123
Score = 28.9 bits (66), Expect = 0.32
Identities = 16/99 (16%), Positives = 27/99 (27%), Gaps = 43/99 (43%)
Query: 35 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGIEHVCN 94
+ ++N + G PL AA G +
Sbjct: 25 DYVAKGE-DVNRTLEGGRKPLHYAAD---CG-------------------------QL-- 53
Query: 95 VLVILITDDDVI--LLRNRATNLNARMHDGTTPLILAAR 131
+++ LL A ++NA TPL+ A
Sbjct: 54 ---------EILEFLLLKGA-DINAPDKHHITPLLSAVY 82
Score = 28.9 bits (66), Expect = 0.33
Identities = 21/107 (19%), Positives = 31/107 (28%), Gaps = 43/107 (40%)
Query: 35 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGIEHVCN 94
LL A ++NA TPL+ A EG HV
Sbjct: 58 FLLLKGA-DINAPDKHHITPLLSAVY---EG-------------------------HV-- 86
Query: 95 VLVILITDDDV--ILLRNRATNLNARMHDGTTPLILAARLAIEGMVE 139
+LL A + + DG T AI+ +++
Sbjct: 87 ---------SCVKLLLSKGA-DKTVKGPDGLTAFEATDNQAIKALLQ 123
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene
family, nuclear protein, phosphorylation, disease
mutation, polymorphism; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.211.1.1 PDB: 4a63_B
Length = 239
Score = 29.5 bits (67), Expect = 0.35
Identities = 18/109 (16%), Positives = 30/109 (27%), Gaps = 39/109 (35%)
Query: 35 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGIEHVCN 94
++ + + +G T L A +V+ L ++ N
Sbjct: 55 RIIYEVD-DPSLPNDEGITALHNAVCAGHTEIVKFL------------------VQFGVN 95
Query: 95 VLVILITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIN 143
V NA DG TPL AA + + L+
Sbjct: 96 V--------------------NAADSDGWTPLHCAASCNNVQVCKFLVE 124
Score = 28.0 bits (63), Expect = 1.3
Identities = 14/102 (13%), Positives = 26/102 (25%), Gaps = 22/102 (21%)
Query: 50 DGTTPLILAARLAIEGMVEDLI--------NDFVCSPGLHDWFWTLGIEHVCNVLVILIT 101
G L R + + I N + L D + V
Sbjct: 4 TGQVSLPPGKRTNLRKTGSERIAHGMRVKFNPLPLAL-LLDSSLEGEFDLV--------- 53
Query: 102 DDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIN 143
++ + + +G T L A +V+ L+
Sbjct: 54 ---QRIIYEVD-DPSLPNDEGITALHNAVCAGHTEIVKFLVQ 91
Score = 27.2 bits (61), Expect = 2.4
Identities = 16/107 (14%), Positives = 26/107 (24%), Gaps = 25/107 (23%)
Query: 35 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLI-----------NDFVCSPGLHDW 83
L++ N+NA DG TPL AA + + L+ +D +
Sbjct: 88 FLVQFGV-NVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKC-E 145
Query: 84 FWTLGIEHVCNVLVILITDDDVILLRNRATNLNARMHDGTTPLILAA 130
G L + + L
Sbjct: 146 EMEEGYTQCSQ-----------FLYGVQE-KMGIMNKGVIYALWDYE 180
>3mal_A Stromal cell-derived factor 2-like protein; trefoil fold, MIR
motifs, unfolded protein response, putativ binding
protein, plant protein; 1.95A {Arabidopsis thaliana}
Length = 199
Score = 29.1 bits (65), Expect = 0.41
Identities = 14/98 (14%), Positives = 26/98 (26%), Gaps = 9/98 (9%)
Query: 29 ITVDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLG 88
IT I L + T HD G + + F + ++
Sbjct: 18 ITYGSAIKLMHEKTKFRLHSHDVPYG---------SGSGQQSVTGFPGVVDSNSYWIVKP 68
Query: 89 IEHVCNVLVILITDDDVILLRNRATNLNARMHDGTTPL 126
+ + I L++ T H +P+
Sbjct: 69 VPGTTEKQGDAVKSGATIRLQHMKTRKWLHSHLHASPI 106
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics,
PSI, protein structure initiative; 2.80A {Legionella
pneumophila} SCOP: a.118.24.1
Length = 376
Score = 29.5 bits (66), Expect = 0.48
Identities = 22/98 (22%), Positives = 32/98 (32%), Gaps = 2/98 (2%)
Query: 46 ARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGIEHVCNVLVILITDDDV 105
AR + + A +L+ V DL+ C G + I VL+ I
Sbjct: 245 ARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGF--YMLRNLIRRNDEVLLDDIRFLLS 302
Query: 106 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIN 143
I D L LA RL +G L++
Sbjct: 303 IPGIKALAPTATIPGDANELLRLALRLGNQGACALLLS 340
Score = 27.2 bits (60), Expect = 2.8
Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 4/56 (7%)
Query: 17 GIEHVCNVLVILITVDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIN 72
E + + + L+++ + L D L LA RL +G L++
Sbjct: 289 NDEVLLDDIRFLLSIPGIKAL----APTATIPGDANELLRLALRLGNQGACALLLS 340
Score = 26.4 bits (58), Expect = 5.2
Identities = 6/30 (20%), Positives = 10/30 (33%)
Query: 31 VDDVILLRNRATNLNARMHDGTTPLILAAR 60
+D + LL + + LAA
Sbjct: 108 LDTLCLLLTSDEIVKVIQAENYQAFRLAAE 137
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein,
human epidermal growth factor receptor 2, de novo
protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G
2v4h_C
Length = 136
Score = 28.5 bits (65), Expect = 0.52
Identities = 29/117 (24%), Positives = 47/117 (40%), Gaps = 24/117 (20%)
Query: 35 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLI---------NDFVCSPGLHDWFW 85
IL+ N A ++NA+ G TPL LA +VE L+ + +P LH
Sbjct: 32 ILMANGA-DVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTP-LH---- 85
Query: 86 TLGIEHVCNVLVILITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLI 142
L + + LL++ A ++NA+ G T ++ E + E L
Sbjct: 86 -LAAFIGHLEIAEV-------LLKHGA-DVNAQDKFGKTAFDISIGNGNEDLAEILQ 133
>1awc_B Protein (GA binding protein beta 1); complex (transcription
regulation/DNA), DNA-binding, nuclear protein, ETS
domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus
musculus} SCOP: d.211.1.1
Length = 153
Score = 28.5 bits (65), Expect = 0.62
Identities = 22/106 (20%), Positives = 39/106 (36%), Gaps = 24/106 (22%)
Query: 35 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLI---------NDFVCSPGLHDWFW 85
+LLR + +AR TPL +AA +VE L+ + + LH
Sbjct: 52 VLLRAGV-SRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTA-LH---- 105
Query: 86 TLGIEHVCNVLVILITDDDVILLRNRATNLNARMHDGTTPLILAAR 131
EH +V L L++ A +++ + T ++
Sbjct: 106 -WATEHNHQEVVEL-------LIKYGA-DVHTQSKFCKTAFDISID 142
Score = 27.4 bits (62), Expect = 1.6
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 106 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLI 142
+LLR + +AR TPL +AA +VE L+
Sbjct: 52 VLLRAGV-SRDARTKVDRTPLHMAASEGHANIVEVLL 87
>3dtz_A Putative chlorite dismutase TA0507; putatvie chlorite dismutase
TA0507 thermoplasma acidophilum, structural genomics,
PSI-2; HET: MSE; 1.81A {Thermoplasma acidophilum}
Length = 244
Score = 28.4 bits (63), Expect = 0.81
Identities = 10/75 (13%), Positives = 21/75 (28%), Gaps = 17/75 (22%)
Query: 2 NVVGSPGLHDWFWTLGIEHVCNVLVILITVDDVILLRN-----RATNLNARMHDGTTPLI 56
S G+ D + + E + D+ R + TP++
Sbjct: 182 YTTYSFGIGDQEFVVLYE-----------IPDIAAWSRVTEKLREARARKWIIKE-TPIL 229
Query: 57 LAARLAIEGMVEDLI 71
L + + L+
Sbjct: 230 LGRLVDAGDIAGFLL 244
>1t9f_A Protein 1D10; structural genomics, PSI, protein structure
initiative, southeast collaboratory for structural
genomics, secsg; 2.00A {Caenorhabditis elegans} SCOP:
b.42.6.1
Length = 187
Score = 28.4 bits (63), Expect = 0.84
Identities = 17/98 (17%), Positives = 24/98 (24%), Gaps = 9/98 (9%)
Query: 29 ITVDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLG 88
+T V+ N HD + D IN +
Sbjct: 7 VTCYSVLKFINANDGSRLHSHDVKYGSGSGQQSVTAVKNSDDINS---------HWQIFP 57
Query: 89 IEHVCNVLVILITDDDVILLRNRATNLNARMHDGTTPL 126
+ I D I L++ T H T PL
Sbjct: 58 ALNAKCNRGDAIKCGDKIRLKHLTTGTFLHSHHFTAPL 95
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Length = 285
Score = 27.9 bits (63), Expect = 1.4
Identities = 11/119 (9%), Positives = 34/119 (28%), Gaps = 26/119 (21%)
Query: 35 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLI----------NDFVCSPGLHDWF 84
ILL + + + G T L A V+ + + +
Sbjct: 80 ILLFSGL-DDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTS-FY--- 134
Query: 85 WTLGIEHVCNVLVILITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIN 143
+ + V +++ +++ + + + + + M+ L++
Sbjct: 135 HAVMLNDV-SIVSYFLSEIPS----------TFDLAILLSCIHITIKNGHVDMMILLLD 182
Score = 26.3 bits (59), Expect = 4.2
Identities = 5/42 (11%), Positives = 11/42 (26%), Gaps = 1/42 (2%)
Query: 31 VDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIN 72
+ + + G + A +V L+N
Sbjct: 12 SKQLKSFLSSK-DTFKADVHGHSASYYAIADNNVRLVCTLLN 52
Score = 26.3 bits (59), Expect = 4.8
Identities = 5/42 (11%), Positives = 11/42 (26%), Gaps = 1/42 (2%)
Query: 102 DDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIN 143
+ + + G + A +V L+N
Sbjct: 12 SKQLKSFLSSK-DTFKADVHGHSASYYAIADNNVRLVCTLLN 52
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing
protein 1; arfgap domain, zinc-binding module, GTPase
activ metal-binding, nitration; 2.30A {Homo sapiens}
Length = 368
Score = 27.1 bits (59), Expect = 3.3
Identities = 23/97 (23%), Positives = 29/97 (29%), Gaps = 5/97 (5%)
Query: 43 NLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGIEHVCNVLVILITD 102
N D TPLI A E L+ + H IL
Sbjct: 227 NWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGP--LHHA---TILGHT 281
Query: 103 DDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVE 139
L R +L AR +G PL +A A +V
Sbjct: 282 GLACLFLKRGADLGARDSEGRDPLTIAMETANADIVT 318
>1t0t_V APC35880; pentamer, icosahedral, structural genomics, protein
structure initiative, MCSG, PSI; HET: P33; 1.75A
{Geobacillus stearothermophilus} SCOP: d.58.4.10
Length = 248
Score = 26.5 bits (58), Expect = 3.5
Identities = 14/74 (18%), Positives = 26/74 (35%), Gaps = 17/74 (22%)
Query: 2 NVVGSPGLHDWFWTLGIEHVCNVLVILITVDDVILLRN-----RATNLNARMHDGTTPLI 56
+ GS GL D+ W + + DD + + R ++AR +
Sbjct: 185 IITGSVGLDDFEWGVTLF-----------SDDALQFKKLVYEMRFDEVSARFGEF-GSFF 232
Query: 57 LAARLAIEGMVEDL 70
+ RL +E +
Sbjct: 233 VGTRLPMENVSSFF 246
>2vxh_A Chlorite dismutase; heme-based enzyme, oxidoreductase, chlorate
respiration, molecular oxygen production; HET: HEM;
2.10A {Azospira oryzae} PDB: 3q09_A* 3q08_A* 3m2s_A*
3m2q_A*
Length = 251
Score = 26.5 bits (58), Expect = 3.9
Identities = 13/74 (17%), Positives = 21/74 (28%), Gaps = 16/74 (21%)
Query: 2 NVVGSPGLHDWFWTLGIEHVCNVLVILITVDDVILLRN-----RATNLNARMHDGTTPLI 56
+ S GL D + E DD+ N N +P
Sbjct: 187 KLYHSTGLDDTDFITYFE-----------TDDLTAFNNLMLSLAQVKENKFHVRWGSPTT 235
Query: 57 LAARLAIEGMVEDL 70
L + E +++ L
Sbjct: 236 LGTIHSPEDVIKAL 249
>3nn1_A Chlorite dismutase; ferredoxin like fold, chlorite dismutation,
periplasmatic, oxidoreductase; HET: HEM; 1.85A
{Candidatus nitrospira defluvii} PDB: 3nn2_A* 3nn4_A*
3nn3_A*
Length = 241
Score = 26.1 bits (57), Expect = 5.0
Identities = 9/74 (12%), Positives = 19/74 (25%), Gaps = 16/74 (21%)
Query: 2 NVVGSPGLHDWFWTLGIEHVCNVLVILITVDDVILLRN-----RATNLNARMHDGTTPLI 56
+ S GL D + E + + N + P +
Sbjct: 177 KLYHSTGLDDVDFITYFE-----------TERLEDFHNLVRALQQVKEFRHNRRFGHPTL 225
Query: 57 LAARLAIEGMVEDL 70
L ++ ++E
Sbjct: 226 LGTMSPLDEILEKF 239
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 26.2 bits (57), Expect = 5.2
Identities = 4/13 (30%), Positives = 8/13 (61%)
Query: 144 FFVHIFFKENINK 156
++V FFK+ +
Sbjct: 215 YYVQFFFKQAEQE 227
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.329 0.144 0.458
Gapped
Lambda K H
0.267 0.0515 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,661,642
Number of extensions: 162953
Number of successful extensions: 977
Number of sequences better than 10.0: 1
Number of HSP's gapped: 946
Number of HSP's successfully gapped: 497
Length of query: 157
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 71
Effective length of database: 4,300,587
Effective search space: 305341677
Effective search space used: 305341677
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 53 (24.7 bits)