RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6362
(157 letters)
>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human
(Homo sapiens) [TaxId: 9606]}
Length = 285
Score = 39.6 bits (91), Expect = 6e-05
Identities = 27/136 (19%), Positives = 47/136 (34%)
Query: 7 PGLHDWFWTLGIEHVCNVLVILITVDDVILLRNRATNLNARMHDGTTPLILAARLAIEGM 66
G + V + + +V L R + G T L+ AA +
Sbjct: 104 YGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEV 163
Query: 67 VEDLINDFVCSPGLHDWFWTLGIEHVCNVLVILITDDDVILLRNRATNLNARMHDGTTPL 126
++ L+++ D + H + LL + ++N R G TPL
Sbjct: 164 LKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPL 223
Query: 127 ILAARLAIEGMVEDLI 142
ILA G+V+ L+
Sbjct: 224 ILAVEKKHLGLVQRLL 239
Score = 29.9 bits (66), Expect = 0.099
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 35 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIN 72
LL +N DG T L+LA L ++ + E L
Sbjct: 237 RLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCK 274
Score = 26.1 bits (56), Expect = 2.4
Identities = 23/128 (17%), Positives = 44/128 (34%), Gaps = 6/128 (4%)
Query: 31 VDDVILLRNRATNLNARM-HDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGI 89
VD V L N+N + G TPL A +++ E +VE L+
Sbjct: 18 VDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGA---- 73
Query: 90 EHVCNVLVILITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINFFVHIF 149
+ I + + L ++ ++N G T + AA ++ L ++
Sbjct: 74 -TPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVN 132
Query: 150 FKENINKF 157
+ +
Sbjct: 133 LRRKTKED 140
>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 154
Score = 35.0 bits (79), Expect = 0.002
Identities = 22/105 (20%), Positives = 32/105 (30%), Gaps = 2/105 (1%)
Query: 39 NRATNLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGIEHVCNVLVI 98
L T L LA R + I DF+ + T + +
Sbjct: 33 TEKIPLANGHEPDETALHLAVRSVDRTSLH--IVDFLVQNSGNLDKQTGKGSTALHYCCL 90
Query: 99 LITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIN 143
+ + LL ++ G TPL +A RL E E L
Sbjct: 91 TDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQ 135
>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 209
Score = 34.8 bits (78), Expect = 0.002
Identities = 20/130 (15%), Positives = 33/130 (25%), Gaps = 5/130 (3%)
Query: 10 HDWFWTLGIEHVCNVLVILITVDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVED 69
+ + L V L ++NA + G T L AA + V
Sbjct: 82 NLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNI 141
Query: 70 LINDFVCSPGLHDWFWTLGIEHVCNVLVILITDDDVILLRNRATNLNARMHDGTTPLILA 129
L+ D T + + L + N H P +A
Sbjct: 142 LLMHHANRDAQDDKDETPLFLAARE-----GSYEASKALLDNFANREITDHMDRLPRDVA 196
Query: 130 ARLAIEGMVE 139
+ +V
Sbjct: 197 SERLHHDIVR 206
Score = 25.5 bits (54), Expect = 3.3
Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Query: 34 VILLRNRATNLNARM-HDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFW 85
+ L + LNA M G T L LAAR A + L++ + +
Sbjct: 5 ISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGR 57
>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit
10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}
Length = 223
Score = 34.6 bits (78), Expect = 0.002
Identities = 21/118 (17%), Positives = 36/118 (30%), Gaps = 5/118 (4%)
Query: 36 LLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGIEHVCNV 95
+ + D T L A +VE L+ V D W+
Sbjct: 22 SILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAG 81
Query: 96 LVILITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINFFVHIFFKEN 153
++ L + +NA +G TPL AA + L+ + K++
Sbjct: 82 RDEIV-----KALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDH 134
Score = 33.4 bits (75), Expect = 0.006
Identities = 17/101 (16%), Positives = 34/101 (33%), Gaps = 5/101 (4%)
Query: 31 VDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGIE 90
+ ++L N +A+ H T + AA M+ L+ + T
Sbjct: 116 HEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHL 175
Query: 91 HVCNVLVILITDDDVILLRNRATNLNARMHDGTTPLILAAR 131
V ++ LL ++ ++ + TPL +A
Sbjct: 176 ACDEERV-----EEAKLLVSQGASIYIENKEEKTPLQVAKG 211
>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor
I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId:
10090]}
Length = 255
Score = 33.5 bits (75), Expect = 0.006
Identities = 19/112 (16%), Positives = 36/112 (32%), Gaps = 4/112 (3%)
Query: 32 DDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGIEH 91
++ + L A +DG TP +A+ +++ + +
Sbjct: 139 EEEPRDEDWRLQLEAENYDGHTP----LHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRT 194
Query: 92 VCNVLVILITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIN 143
++ V + LL + ARM+ G TPL A + L
Sbjct: 195 PLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRA 246
Score = 29.7 bits (65), Expect = 0.11
Identities = 12/63 (19%), Positives = 19/63 (30%)
Query: 10 HDWFWTLGIEHVCNVLVILITVDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVED 69
+ ++ V + LL + ARM+ G TPL A +
Sbjct: 184 LNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARL 243
Query: 70 LIN 72
L
Sbjct: 244 LRA 246
Score = 25.1 bits (53), Expect = 3.9
Identities = 20/120 (16%), Positives = 28/120 (23%), Gaps = 7/120 (5%)
Query: 35 ILLRNRA--TNLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGIEHV 92
LL A L+ + G T L LAA L VE L T
Sbjct: 27 FLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLAC 86
Query: 93 CN-----VLVILITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINFFVH 147
V+L + ++ T AA + +
Sbjct: 87 RVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDED 146
>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId:
9606]}
Length = 408
Score = 33.4 bits (75), Expect = 0.008
Identities = 28/119 (23%), Positives = 44/119 (36%), Gaps = 6/119 (5%)
Query: 35 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGIEHVCN 94
LL+N+A +NA+ D TPL AAR+ MV+ L+ + T
Sbjct: 51 YLLQNKA-KVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAARE 109
Query: 95 VLVILITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINFFVHIFFKEN 153
+ V+ L + + G TPL +AA+ + E L+ H
Sbjct: 110 -----GHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGK 163
Score = 33.0 bits (74), Expect = 0.012
Identities = 26/113 (23%), Positives = 40/113 (35%), Gaps = 5/113 (4%)
Query: 31 VDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGIE 90
+ V LL ++ N N G TPL L A+ + + LI V +T
Sbjct: 244 AEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHV 303
Query: 91 HVCNVLVILITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIN 143
V L ++NA+ G +PL AA+ +V L+
Sbjct: 304 ASHY-----GNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLK 351
Score = 31.9 bits (71), Expect = 0.023
Identities = 26/123 (21%), Positives = 39/123 (31%), Gaps = 38/123 (30%)
Query: 31 VDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGIE 90
+ V L R + N TPL +AAR + +
Sbjct: 13 LPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAK---------------------- 50
Query: 91 HVCNVLVILITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINFFVHIFF 150
LL+N+A +NA+ D TPL AAR+ MV+ L+ +
Sbjct: 51 ---------------YLLQNKA-KVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNL 94
Query: 151 KEN 153
Sbjct: 95 ATT 97
Score = 29.9 bits (66), Expect = 0.12
Identities = 29/131 (22%), Positives = 43/131 (32%), Gaps = 21/131 (16%)
Query: 31 VDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIN--------DFVCSPGLHD 82
V LL R + NA +G TPL +A +V+ L+ + LH
Sbjct: 145 VRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHI 204
Query: 83 WFWTLGIEHVCNVLVILITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLI 142
+E + L + NA G TPL LAA+ MV L+
Sbjct: 205 AAKQNQVEVARS-------------LLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLL 251
Query: 143 NFFVHIFFKEN 153
+ +
Sbjct: 252 SKQANGNLGNK 262
Score = 29.9 bits (66), Expect = 0.13
Identities = 25/106 (23%), Positives = 44/106 (41%), Gaps = 5/106 (4%)
Query: 36 LLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGIEHVCNV 95
+L ++A G TPL +A+ +V+ L+ ++ +
Sbjct: 282 VLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQG 341
Query: 96 LVILITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDL 141
++T +LL+N A + N DGTTPL +A RL + + L
Sbjct: 342 HTDIVT----LLLKNGA-SPNEVSSDGTTPLAIAKRLGYISVTDVL 382
Score = 27.2 bits (59), Expect = 1.00
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 35 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDL 70
+LL+N A + N DGTTPL +A RL + + L
Sbjct: 348 LLLKNGA-SPNEVSSDGTTPLAIAKRLGYISVTDVL 382
>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 301
Score = 31.2 bits (69), Expect = 0.044
Identities = 24/134 (17%), Positives = 46/134 (34%), Gaps = 1/134 (0%)
Query: 10 HDWFWTLGIEHVCNVLVILITVDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVED 69
+L L + NR + + G T AA+ ++ ++
Sbjct: 148 VKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGW 207
Query: 70 LINDFVCSPGLHDWFWTLGIEHVCNVLVILITDDDVILLRNRATNLNARMHDGTTPLILA 129
++ P + N +++ L A LNA+ +G T L +A
Sbjct: 208 IVKK-QNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIA 266
Query: 130 ARLAIEGMVEDLIN 143
ARL +V+ L++
Sbjct: 267 ARLGNISIVDALLD 280
Score = 28.5 bits (62), Expect = 0.39
Identities = 18/115 (15%), Positives = 32/115 (27%), Gaps = 2/115 (1%)
Query: 43 NLNARM-HDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGIEHVCNVLVILIT 101
NLN + G TPL +A +V+ L+ + D + + +
Sbjct: 98 NLNIPVDEHGNTPLHWLTSIANLELVKHLV-KHGSNRLYGDNMGESCLVKAVKSVNNYDS 156
Query: 102 DDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINFFVHIFFKENINK 156
LL L T L + +++ I + K
Sbjct: 157 GTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKK 211
>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}
Length = 228
Score = 31.0 bits (68), Expect = 0.047
Identities = 19/122 (15%), Positives = 34/122 (27%), Gaps = 5/122 (4%)
Query: 10 HDWFWTLGIEHVCNVLVILITVDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVED 69
+ G+ + + +LL A + G +PLI A MV+
Sbjct: 103 LEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQL 162
Query: 70 LINDFVCSPGLHDWFWTLGIEHVCNVLVILITDDDVILLRNRATNLNARMHDGTTPLILA 129
L G + + V L + + + TPL++A
Sbjct: 163 L-----LQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVA 217
Query: 130 AR 131
Sbjct: 218 RS 219
Score = 25.2 bits (53), Expect = 3.7
Identities = 7/55 (12%), Positives = 15/55 (27%)
Query: 6 SPGLHDWFWTLGIEHVCNVLVILITVDDVILLRNRATNLNARMHDGTTPLILAAR 60
G + + + V L + + + TPL++A
Sbjct: 165 QHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARS 219
Score = 24.8 bits (52), Expect = 5.2
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 121 DGTTPLILAARLAIEGMVEDLINFFVH 147
DG TPL +A V L+N F
Sbjct: 2 DGDTPLHIAVVQGNLPAVHRLVNLFQQ 28
Score = 24.0 bits (50), Expect = 9.9
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 50 DGTTPLILAARLAIEGMVEDLINDF 74
DG TPL +A V L+N F
Sbjct: 2 DGDTPLHIAVVQGNLPAVHRLVNLF 26
>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1,
MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 291
Score = 29.7 bits (65), Expect = 0.12
Identities = 22/124 (17%), Positives = 38/124 (30%), Gaps = 46/124 (37%)
Query: 31 VDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGIE 90
+ + LL ++N + +DG TPL AA E
Sbjct: 212 TEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACR---------------------- 249
Query: 91 HVCNVLVILITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINFFVHIFF 150
IL+ N ++ A G T +A ED++ + +
Sbjct: 250 ---------------ILVENLC-DMEAVNKVGQTAFDVAD--------EDILGYLEELQK 285
Query: 151 KENI 154
K+N+
Sbjct: 286 KQNL 289
Score = 24.3 bits (51), Expect = 7.2
Identities = 13/64 (20%), Positives = 22/64 (34%)
Query: 31 VDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGIE 90
++V+ L R ++N DG T L A MV+ L+ + + W
Sbjct: 53 TEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHA 112
Query: 91 HVCN 94
Sbjct: 113 AASC 116
>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit
10, gankyrin {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 229
Score = 29.0 bits (63), Expect = 0.19
Identities = 18/135 (13%), Positives = 37/135 (27%), Gaps = 8/135 (5%)
Query: 10 HDWFWTLGIEHVCNVLVILITVDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVED 69
T ++ V + L ++ + PL AA + ++E
Sbjct: 97 DLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIEL 156
Query: 70 LINDFVCSPGLHDWF-WTLGIEHVCNVLVILITDDDVILLRNRATNLNARMHDGTTPLIL 128
L + D WT + V+L+ + + G +
Sbjct: 157 LCGLGKSAVNWQDKQGWTPLFHALAEGHGDAA----VLLVEKYGAEYDLVDNKGAKAEDV 212
Query: 129 AARLAIEGMVEDLIN 143
A E + + +N
Sbjct: 213 ALN---EQVKKFFLN 224
Score = 27.1 bits (58), Expect = 0.83
Identities = 8/59 (13%), Positives = 17/59 (28%)
Query: 36 LLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGIEHVCN 94
LL ++ + L + DG PL + + L++ +
Sbjct: 19 LLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIA 77
Score = 27.1 bits (58), Expect = 0.89
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 107 LLRNRATNLNARMHDGTTPLILAAR 131
LL ++ + L + DG PL +
Sbjct: 19 LLHSKPSLLLQKDQDGRIPLHWSVS 43
>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416
{Legionella pneumophila [TaxId: 446]}
Length = 346
Score = 28.3 bits (62), Expect = 0.35
Identities = 11/113 (9%), Positives = 26/113 (23%)
Query: 31 VDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGIE 90
+D + LL + + LAA ++ L
Sbjct: 106 LDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAF 165
Query: 91 HVCNVLVILITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIN 143
+ L + + L + + A ++ L++
Sbjct: 166 RLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLD 218
Score = 26.4 bits (57), Expect = 1.5
Identities = 14/99 (14%), Positives = 27/99 (27%), Gaps = 6/99 (6%)
Query: 45 NARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLGIEHVCNVLVILITDDD 104
R+ + L+ + +V L + + ++ +L
Sbjct: 246 VNRLKEMHDAFKLSNPDGVFDLVTKSECLQ-GFYMLRNLIRRNDEVLLDDIRFLLSIPGI 304
Query: 105 VILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIN 143
L D L LA RL +G L++
Sbjct: 305 KALAPTATIP-----GDANELLRLALRLGNQGACALLLS 338
Score = 24.5 bits (52), Expect = 6.9
Identities = 8/32 (25%), Positives = 11/32 (34%)
Query: 41 ATNLNARMHDGTTPLILAARLAIEGMVEDLIN 72
D L LA RL +G L++
Sbjct: 307 LAPTATIPGDANELLRLALRLGNQGACALLLS 338
Score = 24.1 bits (51), Expect = 9.2
Identities = 13/119 (10%), Positives = 25/119 (21%), Gaps = 35/119 (29%)
Query: 25 LVILITVDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWF 84
L+ L + ++ + + +AA G L
Sbjct: 64 LLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAI---TGCSSAL-------------- 106
Query: 85 WTLGIEHVCNVLVILITDDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIN 143
D + LL + + LAA ++ L
Sbjct: 107 ------------------DTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCE 147
>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo
sapiens) [TaxId: 9606]}
Length = 156
Score = 25.9 bits (55), Expect = 1.7
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 43 NLNARMHDGTTPLILAARLAIEGMVEDLIN 72
+L+ R G TPL LA + + +V+ L
Sbjct: 125 DLHRRDARGLTPLELALQRGAQDLVDILQG 154
Score = 25.9 bits (55), Expect = 1.7
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 114 NLNARMHDGTTPLILAARLAIEGMVEDLIN 143
+L+ R G TPL LA + + +V+ L
Sbjct: 125 DLHRRDARGLTPLELALQRGAQDLVDILQG 154
>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans
[TaxId: 6239]}
Length = 277
Score = 26.2 bits (56), Expect = 1.8
Identities = 7/41 (17%), Positives = 15/41 (36%)
Query: 31 VDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLI 71
++ V+ L + ++ A T LA +V+
Sbjct: 234 IEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFD 274
Score = 26.2 bits (56), Expect = 1.9
Identities = 7/37 (18%), Positives = 13/37 (35%), Gaps = 1/37 (2%)
Query: 106 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLI 142
L++ A ++ A T LA +V+
Sbjct: 239 YLIQQGA-SVEAVDATDHTARQLAQANNHHNIVDIFD 274
>d1u1ia1 c.2.1.3 (A:1-227,A:333-392) Myo-inositol 1-phosphate
synthase {Archaeoglobus fulgidus [TaxId: 2234]}
Length = 287
Score = 25.7 bits (56), Expect = 2.5
Identities = 7/30 (23%), Positives = 16/30 (53%)
Query: 118 RMHDGTTPLILAARLAIEGMVEDLINFFVH 147
+ D L+ A + ++G+V+++ FF
Sbjct: 234 LILDIARFLLFAKKKGVKGVVKEMAFFFKS 263
>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens)
[TaxId: 9606]}
Length = 221
Score = 25.6 bits (54), Expect = 2.7
Identities = 11/79 (13%), Positives = 26/79 (32%), Gaps = 1/79 (1%)
Query: 65 GMVEDLINDFVCSPGLHDWFWTLGIEHVCNVLVILITDDDVILLRNRATNLNARMHDGTT 124
G + + ++ G + + + D +LL+ A ++N + G +
Sbjct: 122 GYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGA-DVNRVTYQGYS 180
Query: 125 PLILAARLAIEGMVEDLIN 143
P L + + L
Sbjct: 181 PYQLTWGRPSTRIQQQLGQ 199
Score = 25.2 bits (53), Expect = 3.3
Identities = 9/42 (21%), Positives = 15/42 (35%)
Query: 31 VDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIN 72
D V LL ++N + G +P L + + L
Sbjct: 158 PDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQ 199
Score = 24.1 bits (50), Expect = 8.0
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 121 DGTTPLILAARLAIEGMVEDLINFFV 146
DG + L LA + + ++I
Sbjct: 1 DGDSFLHLAIIHEEKALTMEVIRQVK 26
Score = 24.1 bits (50), Expect = 8.2
Identities = 11/66 (16%), Positives = 21/66 (31%)
Query: 29 ITVDDVILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLINDFVCSPGLHDWFWTLG 88
+T++ + ++ LN + + TPL LA + E L+ T
Sbjct: 17 LTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPL 76
Query: 89 IEHVCN 94
Sbjct: 77 HLACEQ 82
>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 153
Score = 25.2 bits (53), Expect = 3.6
Identities = 8/69 (11%), Positives = 20/69 (28%)
Query: 71 INDFVCSPGLHDWFWTLGIEHVCNVLVILITDDDVILLRNRATNLNARMHDGTTPLILAA 130
I + + G + + + V LL +++ + T ++
Sbjct: 82 IVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISI 141
Query: 131 RLAIEGMVE 139
E + E
Sbjct: 142 DNGNEDLAE 150
Score = 24.0 bits (50), Expect = 8.4
Identities = 7/62 (11%), Positives = 17/62 (27%)
Query: 7 PGLHDWFWTLGIEHVCNVLVILITVDDVILLRNRATNLNARMHDGTTPLILAARLAIEGM 66
G + + + V LL +++ + T ++ E +
Sbjct: 89 HGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDL 148
Query: 67 VE 68
E
Sbjct: 149 AE 150
>d1t0tv_ d.58.4.10 (V:) YwfI homologue {Bacillus stearothermophilus
[TaxId: 1422]}
Length = 243
Score = 24.8 bits (54), Expect = 5.5
Identities = 13/75 (17%), Positives = 22/75 (29%), Gaps = 19/75 (25%)
Query: 2 NVVGSPGLHDWFWTLGIEHVCNVLVILITVDDVILLRN-----RATNLNARMHDGT-TPL 55
+ GS GL D+ W + + DD + + R G
Sbjct: 180 IITGSVGLDDFEWGVTLF-----------SDDALQFKKLVYEMRFD--EVSARFGEFGSF 226
Query: 56 ILAARLAIEGMVEDL 70
+ RL +E +
Sbjct: 227 FVGTRLPMENVSSFF 241
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.329 0.144 0.458
Gapped
Lambda K H
0.267 0.0395 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 648,108
Number of extensions: 28688
Number of successful extensions: 235
Number of sequences better than 10.0: 1
Number of HSP's gapped: 217
Number of HSP's successfully gapped: 80
Length of query: 157
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 79
Effective length of database: 1,336,656
Effective search space: 105595824
Effective search space used: 105595824
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 49 (23.5 bits)