BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6366
(101 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BD9|A Chain A, Human 3-O-Sulfotransferase Isoform 5 With Bound Pap
Length = 280
Score = 135 bits (340), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 58/88 (65%), Positives = 75/88 (85%)
Query: 1 MLYLHPRIQKAAGEVHYFDRDENYARGLEWYRRQMPPSYAEQVTIEKSPSYFVTPEAPER 60
ML LHP + KA+ E+H+FD DENY +G+EWYR++MP SY +Q+TIEKSP+YF+T E PER
Sbjct: 43 MLNLHPAVVKASQEIHFFDNDENYGKGIEWYRKKMPFSYPQQITIEKSPAYFITEEVPER 102
Query: 61 IRAMNASIRLLVIVRDPVTRAISDYTQL 88
I MN+SI+LL+IVR+P TRAISDYTQ+
Sbjct: 103 IYKMNSSIKLLIIVREPTTRAISDYTQV 130
>pdb|1ZRH|A Chain A, Crystal Structure Of Human Heparan Sulfate Glucosamine
3-O- Sulfotransferase 1 In Complex With Pap
Length = 274
Score = 112 bits (281), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 49/88 (55%), Positives = 67/88 (76%)
Query: 1 MLYLHPRIQKAAGEVHYFDRDENYARGLEWYRRQMPPSYAEQVTIEKSPSYFVTPEAPER 60
ML LHP + A EVH+FD +E+Y+ GL WY QMP S+ Q+T+EK+P+YF +P+ PER
Sbjct: 40 MLSLHPDVAAAENEVHFFDWEEHYSHGLGWYLSQMPFSWPHQLTVEKTPAYFTSPKVPER 99
Query: 61 IRAMNASIRLLVIVRDPVTRAISDYTQL 88
+ +MN SIRLL+I+RDP R +SDYTQ+
Sbjct: 100 VYSMNPSIRLLLILRDPSERVLSDYTQV 127
>pdb|1VKJ|A Chain A, Crystal Structure Of Heparan Sulfate 3-O-Sulfotransferase
Isoform 1 In The Presence Of Pap
pdb|1VKJ|B Chain B, Crystal Structure Of Heparan Sulfate 3-O-Sulfotransferase
Isoform 1 In The Presence Of Pap
pdb|1VKJ|C Chain C, Crystal Structure Of Heparan Sulfate 3-O-Sulfotransferase
Isoform 1 In The Presence Of Pap
Length = 285
Score = 112 bits (279), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 49/88 (55%), Positives = 67/88 (76%)
Query: 1 MLYLHPRIQKAAGEVHYFDRDENYARGLEWYRRQMPPSYAEQVTIEKSPSYFVTPEAPER 60
ML LHP + A EVH+FD +E+Y++GL WY QMP S Q+T+EK+P+YF +P+ PER
Sbjct: 51 MLSLHPDVAAAENEVHFFDWEEHYSQGLGWYLTQMPFSSPHQLTVEKTPAYFTSPKVPER 110
Query: 61 IRAMNASIRLLVIVRDPVTRAISDYTQL 88
I +MN +IRLL+I+RDP R +SDYTQ+
Sbjct: 111 IHSMNPTIRLLLILRDPSERVLSDYTQV 138
>pdb|3UAN|A Chain A, Crystal Structure Of 3-O-Sulfotransferase (3-Ost-1) With
Bound Pap And Heptasaccharide Substrate
pdb|3UAN|B Chain B, Crystal Structure Of 3-O-Sulfotransferase (3-Ost-1) With
Bound Pap And Heptasaccharide Substrate
Length = 269
Score = 112 bits (279), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 53/100 (53%), Positives = 70/100 (70%), Gaps = 1/100 (1%)
Query: 1 MLYLHPRIQKAAGEVHYFDRDENYARGLEWYRRQMPPSYAEQVTIEKSPSYFVTPEAPER 60
ML LHP + A EVH+FD +E+Y++GL WY QMP S Q+T+EK+P+YF +P+ PER
Sbjct: 35 MLSLHPDVAAAENEVHFFDWEEHYSQGLGWYLTQMPFSSPHQLTVEKTPAYFTSPKVPER 94
Query: 61 IRAMNASIRLLVIVRDPVTRAISDYTQ-LKIHAAATSPGP 99
I +MN +IRLL+I+RDP R +SDYTQ L H P P
Sbjct: 95 IHSMNPTIRLLLILRDPSERVLSDYTQVLYNHLQKHKPYP 134
>pdb|1T8T|A Chain A, Crystal Structure Of Human 3-O-Sulfotransferase-3 With
Bound Pap
pdb|1T8T|B Chain B, Crystal Structure Of Human 3-O-Sulfotransferase-3 With
Bound Pap
Length = 271
Score = 103 bits (258), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 49/87 (56%), Positives = 63/87 (72%), Gaps = 2/87 (2%)
Query: 1 MLYLHPRIQKAAGEVHYFDRDENYARGLEWYRRQMPPSYAEQVTIEKSPSYFVTPEAPER 60
L +HP ++ E H+FDR +Y +GL WYR MP + Q+T+EK+PSYFVT EAP R
Sbjct: 36 FLRVHPDVRAVGAEPHFFDR--SYDKGLAWYRDLMPRTLDGQITMEKTPSYFVTREAPAR 93
Query: 61 IRAMNASIRLLVIVRDPVTRAISDYTQ 87
I AM+ +L+V+VRDPVTRAISDYTQ
Sbjct: 94 ISAMSKDTKLIVVVRDPVTRAISDYTQ 120
>pdb|1T8U|A Chain A, Crystal Structure Of Human 3-O-Sulfotransferase-3 With
Bound Pap And Tetrasaccharide Substrate
pdb|1T8U|B Chain B, Crystal Structure Of Human 3-O-Sulfotransferase-3 With
Bound Pap And Tetrasaccharide Substrate
Length = 272
Score = 103 bits (258), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 49/87 (56%), Positives = 63/87 (72%), Gaps = 2/87 (2%)
Query: 1 MLYLHPRIQKAAGEVHYFDRDENYARGLEWYRRQMPPSYAEQVTIEKSPSYFVTPEAPER 60
L +HP ++ E H+FDR +Y +GL WYR MP + Q+T+EK+PSYFVT EAP R
Sbjct: 37 FLRVHPDVRAVGAEPHFFDR--SYDKGLAWYRDLMPRTLDGQITMEKTPSYFVTREAPAR 94
Query: 61 IRAMNASIRLLVIVRDPVTRAISDYTQ 87
I AM+ +L+V+VRDPVTRAISDYTQ
Sbjct: 95 ISAMSKDTKLIVVVRDPVTRAISDYTQ 121
>pdb|1NST|A Chain A, The Sulfotransferase Domain Of Human Haparin Sulfate N-
DeacetylaseN-Sulfotransferase
Length = 325
Score = 45.1 bits (105), Expect = 9e-06, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 14 EVHYFDRDENYARGLEWYRR--QMPPSYAEQVTIEKSPSYFVTPEAPERIRAMNASIRLL 71
E+ +F+ NY +G++WY +P + EKS +YF + AP R A+ ++L
Sbjct: 85 EIQFFN-GHNYHKGIDWYMEFFPIPSNTTSDFYFEKSANYFDSEVAPRRAAALLPKAKVL 143
Query: 72 VIVRDPVTRAISDYTQLKIH 91
I+ +P RA S Y + H
Sbjct: 144 TILINPADRAYSWYQHQRAH 163
>pdb|4GBM|A Chain A, Sulfotransferase Domain From The Curacin Biosynthetic
Pathway
Length = 323
Score = 28.1 bits (61), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 10/98 (10%)
Query: 3 YLHPRIQKAAGEVHYFDRDENYA--RGLEWYRRQMPPSY-------AEQVTIEKSPSYFV 53
YL +QK EV D + A + LE + Y A ++ ++KSP+Y +
Sbjct: 83 YLGEGLQKTFMEVKNLDATASQALIKDLESQNLSIQQVYGMLQENIAPRLLVDKSPTYAM 142
Query: 54 TPEAPERIRAMNASIRLLVIVRDPVTRAISDYTQLKIH 91
P ER A+ A+ + + +VR P + I + ++++
Sbjct: 143 EPTILERGEALFANSKYIYLVRHPYS-VIESFVRMRMQ 179
>pdb|2FML|A Chain A, Crystal Structure Of MuttNUDIX FAMILY PROTEIN FROM
ENTEROCOCCUS Faecalis
pdb|2FML|B Chain B, Crystal Structure Of MuttNUDIX FAMILY PROTEIN FROM
ENTEROCOCCUS Faecalis
Length = 273
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 6 PRIQKAAGEVHYFDRDENYARGLEWYRRQMPPSY 39
P+ A E +Y++R + A L WY +Q P Y
Sbjct: 2 PQFASKAEEKNYYERQASLAEFLTWYHQQELPEY 35
>pdb|2FGW|L Chain L, X-Ray Structures Of Fragments From Binding And Nonbinding
Versions Of A Humanized Anti-Cd18 Antibody: Structural
Indications Of The Key Role Of Vh Residues 59 To 65
Length = 214
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/43 (25%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
Query: 35 MPPSYAEQVTIE-----KSPSYFVTPEAPERIRAMNASIRLLV 72
+PP++ + +E +PS F+ P + E++++ AS+ L+
Sbjct: 94 LPPTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLL 136
>pdb|3ZR5|A Chain A, Structure Of Galactocerebrosidase From Mouse
pdb|3ZR6|A Chain A, Structure Of Galactocerebrosidase From Mouse In Complex
With Galactose
Length = 656
Score = 26.2 bits (56), Expect = 4.6, Method: Composition-based stats.
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 17 YFDRDENYARGLEWY 31
+++ DENY RG EW+
Sbjct: 90 HYELDENYFRGYEWW 104
>pdb|1JDW|A Chain A, Crystal Structure And Mechanism Of L-Arginine: Glycine
Amidinotransferase: A Mitochondrial Enzyme Involved In
Creatine Biosynthesis
pdb|2JDW|A Chain A, Crystal Structure And Mechanism Of L-Arginine: Glycine
Amidinotransferase: A Mitochondrial Enzyme Involved In
Creatine Biosynthesis
pdb|3JDW|A Chain A, Crystal Structure And Mechanism Of L-Arginine: Glycine
Amidinotransferase: A Mitochondrial Enzyme Involved In
Creatine Biosynthesis
Length = 423
Score = 25.0 bits (53), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 27 GLEWYRRQMPPSYAEQVTIEKSPS 50
G+EW RR + P Y + K P+
Sbjct: 277 GIEWMRRHLAPDYRVHIISFKDPN 300
>pdb|4JDW|A Chain A, Crystal Structure And Mechanism Of L-Arginine: Glycine
Amidinotransferase: A Mitochondrial Enzyme Involved In
Creatine Biosynthesis
Length = 423
Score = 25.0 bits (53), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 27 GLEWYRRQMPPSYAEQVTIEKSPS 50
G+EW RR + P Y + K P+
Sbjct: 277 GIEWMRRHLAPDYRVHIISFKDPN 300
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.133 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,067,069
Number of Sequences: 62578
Number of extensions: 103695
Number of successful extensions: 535
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 517
Number of HSP's gapped (non-prelim): 16
length of query: 101
length of database: 14,973,337
effective HSP length: 67
effective length of query: 34
effective length of database: 10,780,611
effective search space: 366540774
effective search space used: 366540774
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)