RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy6366
         (101 letters)



>gnl|CDD|216059 pfam00685, Sulfotransfer_1, Sulfotransferase domain. 
          Length = 254

 Score = 45.4 bits (108), Expect = 5e-07
 Identities = 24/98 (24%), Positives = 39/98 (39%), Gaps = 8/98 (8%)

Query: 1   MLYLHPRIQK--AAGEVHYFDRDENYARGLEWYRRQMPPSYAEQ-VTIEKSPS--YFVT- 54
           +L L P         E H F+   N +  LEWY   +    AE  V +   PS     T 
Sbjct: 20  ILSLIPNRGDFEKFEEPHLFN-PHNRSPFLEWYDLFVIFDVAEGPVRLNALPSPRIIKTH 78

Query: 55  -PEAPERIRAMNASIRLLVIVRDPVTRAISDYTQLKIH 91
            P         + + +++ +VR+P   A+S Y   ++ 
Sbjct: 79  LPLHLLPKSLWDPNAKIIYLVRNPKDVAVSYYHFFRMA 116


>gnl|CDD|184085 PRK13491, PRK13491, chemoreceptor glutamine deamidase CheD;
           Provisional.
          Length = 199

 Score = 28.8 bits (64), Expect = 0.39
 Identities = 9/17 (52%), Positives = 12/17 (70%)

Query: 7   RIQKAAGEVHYFDRDEN 23
           R+Q  AG+V +FDR  N
Sbjct: 172 RLQGGAGDVTFFDRHNN 188


>gnl|CDD|223093 COG0014, ProA, Gamma-glutamyl phosphate reductase [Amino acid
           transport and metabolism].
          Length = 417

 Score = 28.3 bits (64), Expect = 0.56
 Identities = 11/30 (36%), Positives = 15/30 (50%)

Query: 58  PERIRAMNASIRLLVIVRDPVTRAISDYTQ 87
           P RI AM   +R +  + DPV   I  +T 
Sbjct: 73  PSRIEAMADGLRQVAALPDPVGEVIDGWTL 102


>gnl|CDD|221257 pfam11838, DUF3358, Domain of unknown function (DUF3358).  This
           domain is functionally uncharacterized. This domain is
           found in eukaryotes and bacteria. This domain is found
           to the C-terminus of an aminopeptidase domain.
          Length = 323

 Score = 27.3 bits (61), Expect = 1.3
 Identities = 8/43 (18%), Positives = 16/43 (37%), Gaps = 3/43 (6%)

Query: 21  DENYARGLEWYRRQMPPSYAEQVTIEKSPSYFVTPEAPERIRA 63
           + N+       ++    S A    +   PS F + E  + + A
Sbjct: 260 ERNFD---ALAKKLPRGSSALGRVVGLYPSGFSSAELLDEVEA 299


>gnl|CDD|237842 PRK14868, PRK14868, DNA topoisomerase VI subunit B; Provisional.
          Length = 795

 Score = 26.7 bits (59), Expect = 2.4
 Identities = 17/73 (23%), Positives = 29/73 (39%), Gaps = 4/73 (5%)

Query: 9   QKAAGEVHYFDRDENYARGLEWYRRQMPPSYAEQVTIEKSPSYFVTPEAPERIRAMNASI 68
           +K A  V    RD ++ R + W     PP   E V +E + +  V  +  +   A   ++
Sbjct: 276 KKTADSVIDNFRDRHFGREMAWR----PPQAHEDVDLEAAVADAVANKGADATAAFARAV 331

Query: 69  RLLVIVRDPVTRA 81
              V  RD +   
Sbjct: 332 ADAVADRDRIAHH 344


>gnl|CDD|236813 PRK10993, PRK10993, outer membrane protease; Reviewed.
          Length = 314

 Score = 26.5 bits (59), Expect = 2.8
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 7/50 (14%)

Query: 10  KAAGEVHYFDRDENYARGLEWYRRQMPPS--YAEQVTIEKSPSYFVTPEA 57
           K +G V   D DE+Y R L  +R +   S  Y+  +       Y+VTP A
Sbjct: 218 KYSGWVSASDNDEHYLRNLT-FRDKFKNSPYYSASINA----GYYVTPNA 262


>gnl|CDD|235330 PRK05015, PRK05015, aminopeptidase B; Provisional.
          Length = 424

 Score = 26.0 bits (58), Expect = 3.3
 Identities = 8/41 (19%), Positives = 15/41 (36%), Gaps = 12/41 (29%)

Query: 29  EWYRRQMPPSYAEQVTIEKSP------------SYFVTPEA 57
           E++R Q+P ++A+                    S+FV    
Sbjct: 345 EFHRSQLPSNFADLANSGSGAGPAGASTAAGFLSHFVENYQ 385


>gnl|CDD|215938 pfam00481, PP2C, Protein phosphatase 2C.  Protein phosphatase 2C is
           a Mn++ or Mg++ dependent protein serine/threonine
           phosphatase.
          Length = 252

 Score = 25.8 bits (57), Expect = 3.7
 Identities = 11/45 (24%), Positives = 14/45 (31%), Gaps = 2/45 (4%)

Query: 59  ERIRAMNASIRLLVIVRD--PVTRAISDYTQLKIHAAATSPGPVT 101
            RIR     +     V     V+RA  D+   K      S  P  
Sbjct: 147 RRIRGAGGFVSRNGRVNGVLAVSRAFGDFELKKGKPQPVSAEPDV 191


>gnl|CDD|173662 cd05571, STKc_PKB, Catalytic domain of the Protein Serine/Threonine
           Kinase, Protein Kinase B.  Serine/Threonine Kinases
           (STKs), Protein Kinase B (PKB) or Akt subfamily,
           catalytic (c) domain. STKs catalyze the transfer of the
           gamma-phosphoryl group from ATP to serine/threonine
           residues on protein substrates. The PKB subfamily is
           part of a larger superfamily that includes the catalytic
           domains of other protein STKs, protein tyrosine kinases,
           RIO kinases, aminoglycoside phosphotransferase, choline
           kinase, and phosphoinositide 3-kinase (PI3K). There are
           three PKB isoforms from different genes, PKB-alpha (or
           Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB
           contains an N-terminal pleckstrin homology (PH) domain
           and a C-terminal catalytic domain. It is activated
           downstream of PI3K and plays important roles in diverse
           cellular functions including cell survival, growth,
           proliferation, angiogenesis, motility, and migration.
           PKB also has a central role in a variety of human
           cancers, having been implicated in tumor initiation,
           progression, and metastasis.
          Length = 323

 Score = 25.9 bits (57), Expect = 4.2
 Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 3/30 (10%)

Query: 26  RGLEW---YRRQMPPSYAEQVTIEKSPSYF 52
             + W    ++++ P +  QVT E    YF
Sbjct: 255 ASINWQDVVQKKLEPPFKPQVTSETDTRYF 284


>gnl|CDD|223494 COG0417, PolB, DNA polymerase elongation subunit (family B) [DNA
           replication, recombination, and repair].
          Length = 792

 Score = 25.8 bits (57), Expect = 4.6
 Identities = 24/102 (23%), Positives = 37/102 (36%), Gaps = 13/102 (12%)

Query: 4   LHPRIQKAAGEVHYFDRDENYARGLEWYRRQMPP-------SYAEQVTIEKSPS---YFV 53
           L    ++ AG     D D+   +GLE  RR  P           E +   +         
Sbjct: 609 LPTAKKRYAG--LLEDGDKIEVKGLETVRRDWPELVKEFQREVLEVLLSGRDVEEALAKY 666

Query: 54  TPEAPERIRAMNASIRLLVIVRDPVTRAISDYTQLKIHAAAT 95
             +  E++R     I  LVI +  +TR +S+Y   K H    
Sbjct: 667 VRDVIEKLRNGEVPIEKLVISKR-LTRPLSEYKANKPHVVVA 707


>gnl|CDD|183547 PRK12475, PRK12475, thiamine/molybdopterin biosynthesis MoeB-like
           protein; Provisional.
          Length = 338

 Score = 25.1 bits (55), Expect = 7.9
 Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 8/76 (10%)

Query: 12  AGEVHYFDRDENYARGLEWYRRQMPPSYAEQVTIEKSPSYFVTPEAPERIRAMNASIRLL 71
            G++   DRD  Y   +EW   Q    Y E+   +K P       A E +R +N+ + ++
Sbjct: 48  IGKLTIADRD--Y---VEWSNLQRQQLYTEEDAKQKKPKAIA---AKEHLRKINSEVEIV 99

Query: 72  VIVRDPVTRAISDYTQ 87
            +V D     + +  +
Sbjct: 100 PVVTDVTVEELEELVK 115


>gnl|CDD|111000 pfam02057, Glyco_hydro_59, Glycosyl hydrolase family 59. 
          Length = 669

 Score = 25.0 bits (54), Expect = 9.0
 Identities = 8/15 (53%), Positives = 11/15 (73%)

Query: 17  YFDRDENYARGLEWY 31
           ++  DENY RG EW+
Sbjct: 102 HYALDENYFRGYEWW 116


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.320    0.133    0.397 

Gapped
Lambda     K      H
   0.267   0.0732    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,433,195
Number of extensions: 459741
Number of successful extensions: 430
Number of sequences better than 10.0: 1
Number of HSP's gapped: 428
Number of HSP's successfully gapped: 28
Length of query: 101
Length of database: 10,937,602
Length adjustment: 67
Effective length of query: 34
Effective length of database: 7,965,884
Effective search space: 270840056
Effective search space used: 270840056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.2 bits)