RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6366
         (101 letters)



>d1vkja_ c.37.1.5 (A:) Heparan sulfate 3-O-sulfotransferase {Mouse
           (Mus musculus) [TaxId: 10090]}
          Length = 258

 Score = 73.8 bits (180), Expect = 6e-18
 Identities = 49/91 (53%), Positives = 68/91 (74%)

Query: 1   MLYLHPRIQKAAGEVHYFDRDENYARGLEWYRRQMPPSYAEQVTIEKSPSYFVTPEAPER 60
           ML LHP +  A  EVH+FD +E+Y++GL WY  QMP S   Q+T+EK+P+YF +P+ PER
Sbjct: 24  MLSLHPDVAAAENEVHFFDWEEHYSQGLGWYLTQMPFSSPHQLTVEKTPAYFTSPKVPER 83

Query: 61  IRAMNASIRLLVIVRDPVTRAISDYTQLKIH 91
           I +MN +IRLL+I+RDP  R +SDYTQ+  +
Sbjct: 84  IHSMNPTIRLLLILRDPSERVLSDYTQVLYN 114


>d1t8ta_ c.37.1.5 (A:) Heparan sulfate glucosamine
           3-O-sulfotransferase 3 {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 271

 Score = 68.4 bits (166), Expect = 6e-16
 Identities = 49/91 (53%), Positives = 63/91 (69%), Gaps = 2/91 (2%)

Query: 1   MLYLHPRIQKAAGEVHYFDRDENYARGLEWYRRQMPPSYAEQVTIEKSPSYFVTPEAPER 60
            L +HP ++    E H+FDR  +Y +GL WYR  MP +   Q+T+EK+PSYFVT EAP R
Sbjct: 36  FLRVHPDVRAVGAEPHFFDR--SYDKGLAWYRDLMPRTLDGQITMEKTPSYFVTREAPAR 93

Query: 61  IRAMNASIRLLVIVRDPVTRAISDYTQLKIH 91
           I AM+   +L+V+VRDPVTRAISDYTQ    
Sbjct: 94  ISAMSKDTKLIVVVRDPVTRAISDYTQTLSK 124


>d1nsta_ c.37.1.5 (A:) Heparan sulfate
           N-deacetylase/N-sulfotransferase domain {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 301

 Score = 62.6 bits (151), Expect = 1e-13
 Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 9/105 (8%)

Query: 1   MLYLHPRIQKAAG------EVHYFDRDENYARGLEWYRRQMP--PSYAEQVTIEKSPSYF 52
            L +HP +           E+ +F+   NY +G++WY    P   +       EKS +YF
Sbjct: 45  FLGMHPDLSSNYPSSETFEEIQFFN-GHNYHKGIDWYMEFFPIPSNTTSDFYFEKSANYF 103

Query: 53  VTPEAPERIRAMNASIRLLVIVRDPVTRAISDYTQLKIHAAATSP 97
            +  AP R  A+    ++L I+ +P  RA S Y   + H    + 
Sbjct: 104 DSEVAPRRAAALLPKAKVLTILINPADRAYSWYQHQRAHDDPVAL 148


>d1mpya2 d.32.1.3 (A:146-307) Catechol 2,3-dioxygenase
           (metapyrocatechase) {Pseudomonas putida, mt2 [TaxId:
           303]}
          Length = 162

 Score = 24.9 bits (53), Expect = 1.8
 Identities = 5/40 (12%), Positives = 15/40 (37%), Gaps = 6/40 (15%)

Query: 11  AAGEVHYFDR------DENYARGLEWYRRQMPPSYAEQVT 44
             G+ +Y D        +   + + ++ R +   +   +T
Sbjct: 123 CGGDYNYPDHKPVTWTTDQLGKAIFYHDRILNERFMTVLT 162


>d2fmla2 d.113.1.6 (A:3-204) Hypothetical protein EF2700,
          N-terminal domain {Enterococcus faecalis [TaxId: 1351]}
          Length = 202

 Score = 24.0 bits (51), Expect = 3.9
 Identities = 11/31 (35%), Positives = 16/31 (51%)

Query: 10 KAAGEVHYFDRDENYARGLEWYRRQMPPSYA 40
            A E +Y++R  + A  L WY +Q  P Y 
Sbjct: 4  SKAEEKNYYERQASLAEFLTWYHQQELPEYE 34


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.133    0.397 

Gapped
Lambda     K      H
   0.267   0.0583    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 399,859
Number of extensions: 17119
Number of successful extensions: 40
Number of sequences better than 10.0: 1
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 11
Length of query: 101
Length of database: 2,407,596
Length adjustment: 62
Effective length of query: 39
Effective length of database: 1,556,336
Effective search space: 60697104
Effective search space used: 60697104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.2 bits)