BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6368
(317 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2NT2|A Chain A, Crystal Structure Of Slingshot Phosphatase 2
pdb|2NT2|B Chain B, Crystal Structure Of Slingshot Phosphatase 2
pdb|2NT2|C Chain C, Crystal Structure Of Slingshot Phosphatase 2
Length = 145
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 54/73 (73%), Gaps = 12/73 (16%)
Query: 124 EWHA--MDSLESRRPPSPDSLRDKVCHILNVTREIDNFFPGIFDYCNIRVYDDDKTDLLK 181
EW+A ++ L++R V +ILNVTREIDNFFPG+F+Y NIRVYD++ TDLL
Sbjct: 16 EWNASNLEDLQNR----------GVRYILNVTREIDNFFPGVFEYHNIRVYDEEATDLLA 65
Query: 182 HWDNTYKYITSAK 194
+W++TYK+I+ AK
Sbjct: 66 YWNDTYKFISKAK 78
>pdb|3S4E|A Chain A, Crystal Structrue Of A Novel Mitogen-Activated Protein
Kinase Phosphatase, Skrp1
Length = 144
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 32/52 (61%)
Query: 143 RDKVCHILNVTREIDNFFPGIFDYCNIRVYDDDKTDLLKHWDNTYKYITSAK 194
++KV HILNV ++N F F Y +I + D +T++L ++ +++I AK
Sbjct: 27 KNKVTHILNVAYGVENAFLSDFTYKSISILDLPETNILSYFPECFEFIEEAK 78
>pdb|1XDO|A Chain A, Crystal Structure Of Escherichia Coli Polyphosphate Kinase
pdb|1XDO|B Chain B, Crystal Structure Of Escherichia Coli Polyphosphate Kinase
pdb|1XDP|A Chain A, Crystal Structure Of The E.Coli Polyphosphate Kinase In
Complex With Amppnp
pdb|1XDP|B Chain B, Crystal Structure Of The E.Coli Polyphosphate Kinase In
Complex With Amppnp
Length = 687
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 54/124 (43%), Gaps = 9/124 (7%)
Query: 136 PPSPDSLRDKVCHILNVTRE-IDNFFPGIFDYCNIRVYD-----DDKTDLLKHWDNTYKY 189
PP R + + N+ R +D+ F G FDY + Y D + DL+ + +
Sbjct: 185 PPEAPRRRKPMILLDNILRYCLDDIFKGFFDYDALNAYSMKMTRDAEYDLVHEMEASLME 244
Query: 190 ITSAKPSQRDETEKIIRSTLKEIIMSVDLDEVTSKYIRSRLEDIMDSDLGEYKSFIDQLE 249
+ S+ QR E +R + + + ++ + K SR + I+ G Y +F D +
Sbjct: 245 LMSSSLKQRLTAEP-VRFVYQRDMPNALVEVLREKLTISRYDSIVPG--GRYHNFKDFIN 301
Query: 250 FRNL 253
F N+
Sbjct: 302 FPNV 305
>pdb|1Q1V|A Chain A, Structure Of The Oncoprotein Dek: A Putative Dna-Binding
Domain Related To The Winged Helix Motif
Length = 70
Score = 30.0 bits (66), Expect = 1.8, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 194 KPSQRDETEKIIRSTLKEIIMSVDLDEVTSKYIRSRL-EDIMDSDLGEYKSFI 245
K ++ T++ ++ T+K+++ S +L+EVT K I ++ E+ DL E K FI
Sbjct: 6 KKLKKPPTDEELKETIKKLLASANLEEVTMKQICKKVYENYPTYDLTERKDFI 58
>pdb|1DDL|A Chain A, Desmodium Yellow Mottle Tymovirus
pdb|1DDL|B Chain B, Desmodium Yellow Mottle Tymovirus
pdb|1DDL|C Chain C, Desmodium Yellow Mottle Tymovirus
Length = 188
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 25/53 (47%)
Query: 48 ADTSITLDGDGGFSVCVCGRQHIFKPVSVQAMWSALQSLHKVSSVARDKNYFL 100
A ++ LD GG C+ G + KP+ V+A + L + K S+ D L
Sbjct: 102 ATSTQVLDTYGGLHFCIGGSVNSVKPIDVEANLTNLNPIIKASTTFTDTPKLL 154
>pdb|2GJ7|F Chain F, Crystal Structure Of A Ge-GiFC COMPLEX
pdb|2GJ7|E Chain E, Crystal Structure Of A Ge-GiFC COMPLEX
Length = 401
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 249 EFRNLLIEGGVKSRVYALEANAHPHDGAPPQ 279
++RN ++E + R L HPH GAPP
Sbjct: 360 QYRNAVVEQPLPQRGADLAEPTHPHVGAPPH 390
>pdb|2JFE|X Chain X, The Crystal Structure Of Human Cytosolic Beta-Glucosidase
Length = 469
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 41/191 (21%), Positives = 71/191 (37%), Gaps = 36/191 (18%)
Query: 80 WSALQSLHKVSSVARDKNYFLNGGSHEWVSHYEAKIASDRSCLNEWHAMDSLESRR---- 135
W + + +S ++ D F G H Y+A ++ WH+ DSL ++
Sbjct: 160 WITINEANVLSVMSYDLGMFPPGIPHFGTGGYQAAHNLIKAHARSWHSYDSLFRKKQKGM 219
Query: 136 -----------PPSPDSLRDKVCHILNVTREIDNFFPGIFDYCNIRVYDDDKTDLLK--- 181
P P+S+ D+ +T +D F IF D D +++K
Sbjct: 220 VSLSLFAVWLEPADPNSVSDQEAAKRAITFHLDLFAKPIF-------IDGDYPEVVKSQI 272
Query: 182 -HWDNTYKYITSAKPSQRDETEKIIRSTLKEIIMSVDLDEVTSKYIRSRLEDIMDSDLGE 240
Y +S P +E +K+I+ T D +Y +RL ++ GE
Sbjct: 273 ASMSQKQGYPSSRLPEFTEEEKKMIKGT---------ADFFAVQYYTTRLIKYQENKKGE 323
Query: 241 YKSFID-QLEF 250
D ++EF
Sbjct: 324 LGILQDAEIEF 334
>pdb|2ZOX|A Chain A, Crystal Structure Of The Covalent Intermediate Of Human
Cytosolic Beta-Glucosidase
pdb|3VKK|A Chain A, Crystal Structure Of The Covalent Intermediate Of Human
Cytosolic Beta-Glucosidase-Mannose Complex
Length = 469
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 41/191 (21%), Positives = 71/191 (37%), Gaps = 36/191 (18%)
Query: 80 WSALQSLHKVSSVARDKNYFLNGGSHEWVSHYEAKIASDRSCLNEWHAMDSLESRR---- 135
W + + +S ++ D F G H Y+A ++ WH+ DSL ++
Sbjct: 160 WITINQANVLSVMSYDLGMFPPGIPHFGTGGYQAAHNLIKAHARSWHSYDSLFRKKQKGM 219
Query: 136 -----------PPSPDSLRDKVCHILNVTREIDNFFPGIFDYCNIRVYDDDKTDLLK--- 181
P P+S+ D+ +T +D F IF D D +++K
Sbjct: 220 VSLSLFAVWLEPADPNSVSDQEAAKRAITFHLDLFAKPIF-------IDGDYPEVVKSQI 272
Query: 182 -HWDNTYKYITSAKPSQRDETEKIIRSTLKEIIMSVDLDEVTSKYIRSRLEDIMDSDLGE 240
Y +S P +E +K+I+ T D +Y +RL ++ GE
Sbjct: 273 ASMSQKQGYPSSRLPEFTEEEKKMIKGT---------ADFFAVQYYTTRLIKYQENKKGE 323
Query: 241 YKSFID-QLEF 250
D ++EF
Sbjct: 324 LGILQDAEIEF 334
>pdb|2E9L|A Chain A, Crystal Structure Of Human Cytosolic Neutral
Beta-Glycosylceramidase (Klotho-Related Prote:klrp)
Complex With Glucose And Fatty Acids
pdb|2E9M|A Chain A, Crystal Structure Of Human Cytosolic Neutral Beta-
Glycosylceramidase (Klotho-Related Prote:klrp) Complex
With Galactose And Fatty Acids
Length = 469
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 41/191 (21%), Positives = 71/191 (37%), Gaps = 36/191 (18%)
Query: 80 WSALQSLHKVSSVARDKNYFLNGGSHEWVSHYEAKIASDRSCLNEWHAMDSLESRR---- 135
W + + +S ++ D F G H Y+A ++ WH+ DSL ++
Sbjct: 160 WITINEANVLSVMSYDLGMFPPGIPHFGTGGYQAAHNLIKAHARSWHSYDSLFRKKQKGM 219
Query: 136 -----------PPSPDSLRDKVCHILNVTREIDNFFPGIFDYCNIRVYDDDKTDLLK--- 181
P P+S+ D+ +T +D F IF D D +++K
Sbjct: 220 VSLSLFAVWLEPADPNSVSDQEAAKRAITFHLDLFAKPIF-------IDGDYPEVVKSQI 272
Query: 182 -HWDNTYKYITSAKPSQRDETEKIIRSTLKEIIMSVDLDEVTSKYIRSRLEDIMDSDLGE 240
Y +S P +E +K+I+ T D +Y +RL ++ GE
Sbjct: 273 ASMSQKQGYPSSRLPEFTEEEKKMIKGT---------ADFFAVQYYTTRLIKYQENKKGE 323
Query: 241 YKSFID-QLEF 250
D ++EF
Sbjct: 324 LGILQDAEIEF 334
>pdb|3EZZ|A Chain A, Crystal Structure Of Human Mkp-2
pdb|3EZZ|B Chain B, Crystal Structure Of Human Mkp-2
pdb|3EZZ|C Chain C, Crystal Structure Of Human Mkp-2
pdb|3EZZ|D Chain D, Crystal Structure Of Human Mkp-2
pdb|3EZZ|E Chain E, Crystal Structure Of Human Mkp-2
pdb|3EZZ|F Chain F, Crystal Structure Of Human Mkp-2
Length = 144
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 149 ILNVTREIDNFFPGIFDYCNIRVYDDDKTDLLKHWDNTYKYITSAK 194
+LNV+ + N F G + Y I V D+ K D+ + +YI + K
Sbjct: 33 LLNVSSDCPNHFEGHYQYKCIPVEDNHKADISSWFMEAIEYIDAVK 78
>pdb|1TAQ|A Chain A, Structure Of Taq Dna Polymerase
Length = 832
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 12/110 (10%)
Query: 179 LLKHW---DNTYKYITSAKPSQRDETEKIIRSTLKEIIMSVDLDEV-TSKYIRSRLEDIM 234
LL+ W + K + KP+ R EKI+ + + ++ +S DL +V T +
Sbjct: 207 LLEEWGSLEALLKNLDRLKPAIR---EKIL-AHMDDLKLSWDLAKVRTDLPLEVDFAKRR 262
Query: 235 DSDLGEYKSFIDQLEFRNLLIEGGVKSRVYALEANAHPHDGAPPQPSLLS 284
+ D ++F+++LEF +LL E G+ ALE P PP+ + +
Sbjct: 263 EPDRERLRAFLERLEFGSLLHEFGLLESPKALEEAPWP----PPEGAFVG 308
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,580,153
Number of Sequences: 62578
Number of extensions: 392312
Number of successful extensions: 983
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 975
Number of HSP's gapped (non-prelim): 25
length of query: 317
length of database: 14,973,337
effective HSP length: 99
effective length of query: 218
effective length of database: 8,778,115
effective search space: 1913629070
effective search space used: 1913629070
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)