Query psy6368
Match_columns 317
No_of_seqs 143 out of 177
Neff 4.2
Searched_HMMs 46136
Date Sat Aug 17 00:40:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6368.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6368hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1716|consensus 99.8 3.7E-21 8E-26 180.8 7.1 108 141-248 96-219 (285)
2 KOG1718|consensus 99.8 1.2E-20 2.7E-25 168.6 8.6 115 141-258 38-165 (198)
3 KOG1717|consensus 99.8 6.9E-19 1.5E-23 166.7 6.6 108 142-249 194-316 (343)
4 smart00195 DSPc Dual specifici 99.6 1.4E-15 3.1E-20 125.9 7.9 103 141-243 22-137 (138)
5 PF00782 DSPc: Dual specificit 99.6 3.7E-15 8.1E-20 122.1 6.3 103 141-243 14-132 (133)
6 cd00127 DSPc Dual specificity 99.4 5.9E-13 1.3E-17 109.2 5.1 102 141-242 23-139 (139)
7 PRK12361 hypothetical protein; 99.1 5.9E-11 1.3E-15 120.4 6.9 101 142-243 117-235 (547)
8 PTZ00242 protein tyrosine phos 98.1 1.8E-06 3.9E-11 76.1 3.4 103 142-248 37-161 (166)
9 KOG1719|consensus 97.5 0.00022 4.7E-09 64.3 5.7 112 137-248 43-173 (183)
10 COG2453 CDC14 Predicted protei 97.4 0.00052 1.1E-08 60.9 7.3 94 148-242 57-162 (180)
11 PTZ00393 protein tyrosine phos 97.1 0.00051 1.1E-08 65.0 4.1 101 141-246 112-230 (241)
12 PF08766 DEK_C: DEK C terminal 96.2 0.0037 7.9E-08 45.8 2.6 45 204-248 4-48 (54)
13 KOG1720|consensus 83.3 4.2 9.1E-05 38.5 7.0 83 143-225 92-188 (225)
14 cd04330 RNAP_III_Rpc25_N RNAP_ 67.2 9 0.0002 30.3 4.0 35 39-74 40-79 (80)
15 PLN02727 NAD kinase 59.9 21 0.00045 40.4 6.4 103 78-187 210-336 (986)
16 cd04331 RNAP_E_N RNAP_E_N: Rpo 58.2 15 0.00033 29.1 3.8 36 39-74 40-79 (80)
17 cd00655 RNAP_Rpb7_N_like RNAP_ 53.9 22 0.00047 28.0 4.0 35 39-74 40-79 (80)
18 cd04329 RNAP_II_Rpb7_N RNAP_II 52.3 31 0.00067 27.2 4.6 36 39-74 40-79 (80)
19 PF09792 But2: Ubiquitin 3 bin 50.4 42 0.00091 29.4 5.6 59 2-64 8-77 (143)
20 PF02831 gpW: gpW; InterPro: 46.9 52 0.0011 25.8 5.0 38 56-93 20-57 (68)
21 PF15432 Sec-ASP3: Accessory S 41.3 25 0.00054 30.6 2.8 67 110-179 17-84 (128)
22 COG4825 Uncharacterized membra 40.4 26 0.00056 35.2 3.0 60 177-248 145-206 (395)
23 COG3222 Uncharacterized protei 36.2 37 0.00081 31.9 3.2 63 24-97 104-179 (211)
24 cd02006 TPP_Gcl Thiamine pyrop 35.7 23 0.0005 31.6 1.8 24 49-84 76-99 (202)
25 cd04328 RNAP_I_Rpa43_N RNAP_I_ 35.2 47 0.001 26.3 3.3 37 38-74 45-88 (89)
26 PF00207 A2M: Alpha-2-macroglo 32.3 35 0.00077 26.8 2.1 41 37-77 15-59 (92)
27 TIGR03711 acc_sec_asp3 accesso 31.7 43 0.00093 29.6 2.7 67 110-179 28-95 (135)
28 PF14566 PTPlike_phytase: Inos 31.3 1.1E+02 0.0025 26.3 5.3 31 162-193 91-121 (149)
29 PF06172 Cupin_5: Cupin superf 27.2 1.2E+02 0.0025 26.6 4.7 48 15-65 75-124 (139)
30 cd02015 TPP_AHAS Thiamine pyro 25.3 47 0.001 29.2 1.9 22 50-83 70-91 (186)
31 PRK07064 hypothetical protein; 23.4 36 0.00079 34.8 0.9 23 50-84 425-447 (544)
32 cd02013 TPP_Xsc_like Thiamine 21.5 58 0.0012 29.1 1.7 23 50-84 73-95 (196)
33 PRK09812 toxin ChpB; Provision 20.7 1.8E+02 0.0039 24.3 4.4 13 10-22 27-39 (116)
No 1
>KOG1716|consensus
Probab=99.83 E-value=3.7e-21 Score=180.78 Aligned_cols=108 Identities=20% Similarity=0.211 Sum_probs=100.7
Q ss_pred cccCceeEEEEeecccCCC--CCC-CceeeEEEeccCCCcchHHHHHHHHHhHhhcCCCCCC-----------cHHHHHH
Q psy6368 141 SLRDKVCHILNVTREIDNF--FPG-IFDYCNIRVYDDDKTDLLKHWDNTYKYITSAKPSQRD-----------ETEKIIR 206 (317)
Q Consensus 141 ~~r~kIthILNVA~ei~N~--FPg-~f~Yk~I~V~D~p~tdLl~hf~e~~dFId~Ar~sgg~-----------SaeiVIa 206 (317)
+.+.+|+|||||+.++++. ++. +|.|++|++.|.+++||+.||+++++||+.|+..||+ |+++|||
T Consensus 96 l~~~~it~vln~~~~~~~~~~~~~~~~~y~~i~~~D~~~~~i~~~~~~~~~fI~~a~~~~~~vlVHC~~GvSRSat~viA 175 (285)
T KOG1716|consen 96 LKKLGITHVLNVSSSCPNPRFLKEQGIKYLRIPVEDNPSTDILQHFPEAISFIEKAREKGGKVLVHCQAGVSRSATLVIA 175 (285)
T ss_pred HHHcCCCEEEEecccCCccccccccCceEEeccccCCccccHHHHHHHHHHHHHHHHhCCCeEEEEcCCccchhHHHHHH
Confidence 4678999999999999994 444 8999999999999999999999999999999999885 8999999
Q ss_pred HHHHhccccccc--chhhhHHHHhhcChhhhhhhhhhHHHHhhh
Q psy6368 207 STLKEIIMSVDL--DEVTSKYIRSRLEDIMDSDLGEYKSFIDQL 248 (317)
Q Consensus 207 YLMk~immS~DL--e~VksKr~R~rPN~GF~~QLkeYe~fId~e 248 (317)
|+|+..+|+++. +.||.+|+.+.||.||+.||.+|++.+...
T Consensus 176 YlM~~~~~~l~~A~~~vk~~R~~i~PN~gf~~QL~~~e~~l~~~ 219 (285)
T KOG1716|consen 176 YLMKYEGLSLEDAYELVKSRRPIISPNFGFLRQLLEFEKRLSKK 219 (285)
T ss_pred HHHHHcCCCHHHHHHHHHHhCCccCCCHHHHHHHHHHHHhhccC
Confidence 999999999985 699999999999999999999999999876
No 2
>KOG1718|consensus
Probab=99.83 E-value=1.2e-20 Score=168.63 Aligned_cols=115 Identities=17% Similarity=0.079 Sum_probs=105.7
Q ss_pred cccCceeEEEEeecccCCCCCCCceeeEEEeccCCCcchHHHHHHHHHhHhhcCCCCCC-----------cHHHHHHHHH
Q psy6368 141 SLRDKVCHILNVTREIDNFFPGIFDYCNIRVYDDDKTDLLKHWDNTYKYITSAKPSQRD-----------ETEKIIRSTL 209 (317)
Q Consensus 141 ~~r~kIthILNVA~ei~N~FPg~f~Yk~I~V~D~p~tdLl~hf~e~~dFId~Ar~sgg~-----------SaeiVIaYLM 209 (317)
+.++|||+|+|+|.|++|..-++++|.+|++.|.|.+.|-.||+...|-|++....||+ ||+.++||||
T Consensus 38 l~~~~It~IiNat~E~pn~~l~~~qy~kv~~~D~p~~~l~~hfD~vAD~I~~v~~~gG~TLvHC~AGVSRSAsLClAYLm 117 (198)
T KOG1718|consen 38 LKKRKITCIINATTEVPNTSLPDIQYMKVPLEDTPQARLYDHFDPVADKIHSVIMRGGKTLVHCVAGVSRSASLCLAYLM 117 (198)
T ss_pred HHhcCceEEEEcccCCCCccCCCceeEEEEcccCCcchhhhhhhHHHHHHHHHHhcCCcEEEEEccccchhHHHHHHHHH
Confidence 46899999999999999998999999999999999999999999999999999988885 9999999999
Q ss_pred Hhcccccccc--hhhhHHHHhhcChhhhhhhhhhHHHHhhhhhhceeeecc
Q psy6368 210 KEIIMSVDLD--EVTSKYIRSRLEDIMDSDLGEYKSFIDQLEFRNLLIEGG 258 (317)
Q Consensus 210 k~immS~DLe--~VksKr~R~rPN~GF~~QLkeYe~fId~e~~~~ll~~~~ 258 (317)
|++.|++..+ +||++||.+|||.||++||..||..+-.. .-+.|-|
T Consensus 118 K~~~msLreAy~~vKa~RpiIRPN~GFw~QLi~YE~qL~g~---~sV~MV~ 165 (198)
T KOG1718|consen 118 KYHCMSLREAYHWVKARRPIIRPNVGFWRQLIDYEQQLFGN---ASVRMVQ 165 (198)
T ss_pred HHccchHHHHHHHHHhhCceeCCCccHHHHHHHHHHHhcCC---CeEEEEe
Confidence 9999999875 99999999999999999999999988766 4555543
No 3
>KOG1717|consensus
Probab=99.76 E-value=6.9e-19 Score=166.71 Aligned_cols=108 Identities=16% Similarity=0.198 Sum_probs=100.2
Q ss_pred ccCceeEEEEeecccCCCCCC--CceeeEEEeccCCCcchHHHHHHHHHhHhhcCCCCCC-----------cHHHHHHHH
Q psy6368 142 LRDKVCHILNVTREIDNFFPG--IFDYCNIRVYDDDKTDLLKHWDNTYKYITSAKPSQRD-----------ETEKIIRST 208 (317)
Q Consensus 142 ~r~kIthILNVA~ei~N~FPg--~f~Yk~I~V~D~p~tdLl~hf~e~~dFId~Ar~sgg~-----------SaeiVIaYL 208 (317)
.+++|+||||||...||.|.+ .|.|+.|++.|...+++.+.|+|++.||++||.++.+ |+|+++|||
T Consensus 194 kk~gI~yviNVTpnlpn~fe~~g~f~YkqipisDh~Sqnls~ffpEAIsfIdeArsk~cgvLVHClaGISRSvTvtvaYL 273 (343)
T KOG1717|consen 194 KKYGIKYVINVTPNLPNNFENNGEFIYKQIPISDHASQNLSQFFPEAISFIDEARSKNCGVLVHCLAGISRSVTVTVAYL 273 (343)
T ss_pred HhcCceEEEecCCCCcchhhcCCceeEEeeeccchhhhhhhhhhHHHHHHHHHhhccCCcEEEeeeccccchhHHHHHHH
Confidence 578899999999999999964 5999999999999999999999999999999987653 999999999
Q ss_pred HHhccccccc--chhhhHHHHhhcChhhhhhhhhhHHHHhhhh
Q psy6368 209 LKEIIMSVDL--DEVTSKYIRSRLEDIMDSDLGEYKSFIDQLE 249 (317)
Q Consensus 209 Mk~immS~DL--e~VksKr~R~rPN~GF~~QLkeYe~fId~e~ 249 (317)
|++.+.+++. ++||-|+.-+.||=+||.||..||..++-+.
T Consensus 274 Mqkl~lslndAyd~Vk~kksnisPNFnFMgQLldfertlgl~s 316 (343)
T KOG1717|consen 274 MQKLNLSLNDAYDFVKHKKSNISPNFNFMGQLLDFERTLGLES 316 (343)
T ss_pred HHHhccchhhHHHHHHHhccCCCCCcchhHHHHHHHHHhhccC
Confidence 9999999997 5898898999999999999999999998774
No 4
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=99.61 E-value=1.4e-15 Score=125.86 Aligned_cols=103 Identities=20% Similarity=0.221 Sum_probs=93.8
Q ss_pred cccCceeEEEEeecccCCCCCCCceeeEEEeccCCCcchHHHHHHHHHhHhhcCCCCC-----------CcHHHHHHHHH
Q psy6368 141 SLRDKVCHILNVTREIDNFFPGIFDYCNIRVYDDDKTDLLKHWDNTYKYITSAKPSQR-----------DETEKIIRSTL 209 (317)
Q Consensus 141 ~~r~kIthILNVA~ei~N~FPg~f~Yk~I~V~D~p~tdLl~hf~e~~dFId~Ar~sgg-----------~SaeiVIaYLM 209 (317)
+.+++|++|||++.+.++.++.++.|.++|+.|.+..++.++|+.+.+||+.++..|+ +|++++++|+|
T Consensus 22 l~~~gi~~Vi~l~~~~~~~~~~~~~~~~ipi~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~~yl~ 101 (138)
T smart00195 22 LKKLGITHVINVTNEVPNLNKKGFTYLGVPILDNTETKISPYFPEAVEFIEDAEKKGGKVLVHCQAGVSRSATLIIAYLM 101 (138)
T ss_pred HHHcCCCEEEEccCCCCCCCCCCCEEEEEECCCCCCCChHHHHHHHHHHHHHHhcCCCeEEEECCCCCchHHHHHHHHHH
Confidence 3468999999999998888889999999999998889999999999999999887664 38899999999
Q ss_pred Hhccccccc--chhhhHHHHhhcChhhhhhhhhhHH
Q psy6368 210 KEIIMSVDL--DEVTSKYIRSRLEDIMDSDLGEYKS 243 (317)
Q Consensus 210 k~immS~DL--e~VksKr~R~rPN~GF~~QLkeYe~ 243 (317)
+..+|+.+. ++|+++|+.+.||++|..||++|++
T Consensus 102 ~~~~~~~~~A~~~v~~~R~~~~p~~~~~~qL~~~e~ 137 (138)
T smart00195 102 KYRNLSLNDAYDFVKDRRPIISPNFGFLRQLIEYER 137 (138)
T ss_pred HHhCCCHHHHHHHHHHHCCccCCCHhHHHHHHHHhh
Confidence 999999985 6999999999999999999999985
No 5
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=99.57 E-value=3.7e-15 Score=122.13 Aligned_cols=103 Identities=21% Similarity=0.273 Sum_probs=93.7
Q ss_pred cccCceeEEEEeecccCC---CCCCCceeeEEEeccCCCcchHHHHHHHHHhHhhcCCCCCC-----------cHHHHHH
Q psy6368 141 SLRDKVCHILNVTREIDN---FFPGIFDYCNIRVYDDDKTDLLKHWDNTYKYITSAKPSQRD-----------ETEKIIR 206 (317)
Q Consensus 141 ~~r~kIthILNVA~ei~N---~FPg~f~Yk~I~V~D~p~tdLl~hf~e~~dFId~Ar~sgg~-----------SaeiVIa 206 (317)
+.+.+|+||||++.+.++ +-+.++.|.++++.|....++..+++.+.+||+.+...|+. |++++++
T Consensus 14 l~~~~I~~Vin~~~~~~~~~~~~~~~~~~~~i~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~a 93 (133)
T PF00782_consen 14 LKNLGITHVINLQEECPNPYFYKPEGIEYLRIPIDDDPEEPILEHLDQAVEFIENAISEGGKVLVHCKAGLSRSGAVAAA 93 (133)
T ss_dssp HHHTTEEEEEECSSSSSTSHHHTTTTSEEEEEEEESSTTSHGGGGHHHHHHHHHHHHHTTSEEEEEESSSSSHHHHHHHH
T ss_pred HHHCCCCEEEEccCCCcCchhcccCCCEEEEEEecCCCCcchHHHHHHHHHhhhhhhcccceeEEEeCCCcccchHHHHH
Confidence 356899999999998877 44788999999999999999999999999999998877653 8999999
Q ss_pred HHHHhccccccc--chhhhHHHHhhcChhhhhhhhhhHH
Q psy6368 207 STLKEIIMSVDL--DEVTSKYIRSRLEDIMDSDLGEYKS 243 (317)
Q Consensus 207 YLMk~immS~DL--e~VksKr~R~rPN~GF~~QLkeYe~ 243 (317)
|||+..+|+++. +.|+++|+.+.||.+|..||.+|++
T Consensus 94 yLm~~~~~~~~~A~~~v~~~rp~~~~~~~~~~~L~~~e~ 132 (133)
T PF00782_consen 94 YLMKKNGMSLEEAIEYVRSRRPQINPNPSFIRQLYEYEK 132 (133)
T ss_dssp HHHHHHTSSHHHHHHHHHHHSTTSTHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHhhc
Confidence 999999999985 6999999999999999999999986
No 6
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=99.37 E-value=5.9e-13 Score=109.17 Aligned_cols=102 Identities=23% Similarity=0.317 Sum_probs=89.7
Q ss_pred cccCceeEEEEeecccCC--CCCCCceeeEEEeccCCCcchHHHHHHHHHhHhhcCCCCC-----------CcHHHHHHH
Q psy6368 141 SLRDKVCHILNVTREIDN--FFPGIFDYCNIRVYDDDKTDLLKHWDNTYKYITSAKPSQR-----------DETEKIIRS 207 (317)
Q Consensus 141 ~~r~kIthILNVA~ei~N--~FPg~f~Yk~I~V~D~p~tdLl~hf~e~~dFId~Ar~sgg-----------~SaeiVIaY 207 (317)
+..++|++|||++.+.+. +...++.|.++++.|.+..++...|+.+.+||+.++.+|+ +|.+++++|
T Consensus 23 L~~~gi~~VI~l~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~~~ 102 (139)
T cd00127 23 LKKLGITHVLNVAKEVPNENLFLSDFNYLYVPILDLPSQDISKYFDEAVDFIDDAREKGGKVLVHCLAGVSRSATLVIAY 102 (139)
T ss_pred HHHcCCCEEEEcccCCCCcccCCCCceEEEEEceeCCCCChHHHHHHHHHHHHHHHhcCCcEEEECCCCCchhHHHHHHH
Confidence 346899999999987763 4578899999999999989999999999999998776553 388899999
Q ss_pred HHHhccccccc--chhhhHHHHhhcChhhhhhhhhhH
Q psy6368 208 TLKEIIMSVDL--DEVTSKYIRSRLEDIMDSDLGEYK 242 (317)
Q Consensus 208 LMk~immS~DL--e~VksKr~R~rPN~GF~~QLkeYe 242 (317)
+|++.+|+.+. +.|+++|+...||++|..||.+||
T Consensus 103 l~~~~~~~~~~a~~~vr~~r~~~~~~~~~~~~l~~~~ 139 (139)
T cd00127 103 LMKTLGLSLREAYEFVKSRRPIISPNAGFMRQLKEYE 139 (139)
T ss_pred HHHHcCCCHHHHHHHHHHHCCccCCCHHHHHHHHHhC
Confidence 99999998874 699999999999999999999996
No 7
>PRK12361 hypothetical protein; Provisional
Probab=99.14 E-value=5.9e-11 Score=120.36 Aligned_cols=101 Identities=20% Similarity=0.261 Sum_probs=84.7
Q ss_pred ccCceeEEEEeecccC----CCCCCCceeeEEEeccCCCcchHHHHHHHHHhHhhcCCCCCC-----------cHHHHHH
Q psy6368 142 LRDKVCHILNVTREID----NFFPGIFDYCNIRVYDDDKTDLLKHWDNTYKYITSAKPSQRD-----------ETEKIIR 206 (317)
Q Consensus 142 ~r~kIthILNVA~ei~----N~FPg~f~Yk~I~V~D~p~tdLl~hf~e~~dFId~Ar~sgg~-----------SaeiVIa 206 (317)
.+++|++|||++.|.+ +.+++++.|+++|+.|....+ ..+|+++.+||++++++|+. |+++++|
T Consensus 117 ~~~gI~~Vldlt~E~~~~~~~~~~~~i~yl~iPi~D~~~p~-~~~l~~a~~~i~~~~~~~~~VlVHC~~G~sRSa~vv~a 195 (547)
T PRK12361 117 KSNKITAILDVTAEFDGLDWSLTEEDIDYLNIPILDHSVPT-LAQLNQAINWIHRQVRANKSVVVHCALGRGRSVLVLAA 195 (547)
T ss_pred HHcCCCEEEEcccccccccccccccCceEEEeecCCCCCCc-HHHHHHHHHHHHHHHHCCCeEEEECCCCCCcHHHHHHH
Confidence 4689999999998875 356788999999999986554 58999999999998887653 9999999
Q ss_pred HHHHh-cccccc--cchhhhHHHHhhcChhhhhhhhhhHH
Q psy6368 207 STLKE-IIMSVD--LDEVTSKYIRSRLEDIMDSDLGEYKS 243 (317)
Q Consensus 207 YLMk~-immS~D--Le~VksKr~R~rPN~GF~~QLkeYe~ 243 (317)
|||++ .+++.+ ++.|+++|++++||+++.++|++|.+
T Consensus 196 yLm~~~~~~~~~eA~~~vr~~Rp~v~~n~~q~~~l~~~~~ 235 (547)
T PRK12361 196 YLLCKDPDLTVEEVLQQIKQIRKTARLNKRQLRALEKMLE 235 (547)
T ss_pred HHHHhccCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
Confidence 99965 588887 47999999999999977777776643
No 8
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=98.12 E-value=1.8e-06 Score=76.14 Aligned_cols=103 Identities=13% Similarity=-0.004 Sum_probs=70.7
Q ss_pred ccCceeEEEEeecccCCCCC-----CCceeeEEEeccCCCcchHHHHHHHHHhHhhcC----CCCC-----------CcH
Q psy6368 142 LRDKVCHILNVTREIDNFFP-----GIFDYCNIRVYDDDKTDLLKHWDNTYKYITSAK----PSQR-----------DET 201 (317)
Q Consensus 142 ~r~kIthILNVA~ei~N~FP-----g~f~Yk~I~V~D~p~tdLl~hf~e~~dFId~Ar----~sgg-----------~Sa 201 (317)
.+++|+||||+.. +.+.| .+|.|.++|+.|... .-.....+.++||+++. ..|+ +|.
T Consensus 37 ~~~gI~~Iv~l~~--~~~~~~~~~~~gi~~~~~p~~D~~~-P~~~~i~~~~~~i~~~~~~~~~~g~~V~VHC~aGigRSg 113 (166)
T PTZ00242 37 QRYNVTHLVRVCG--PTYDAELLEKNGIEVHDWPFDDGAP-PPKAVIDNWLRLLDQEFAKQSTPPETIAVHCVAGLGRAP 113 (166)
T ss_pred HhCCCeEEEecCC--CCCCHHHHHHCCCEEEecCCCCCCC-CCHHHHHHHHHHHHHHHHhhccCCCeEEEECCCCCCHHH
Confidence 5789999999964 23322 357888888776421 12223344455555543 2243 289
Q ss_pred HHHHHHHHHhccccccc--chhhhHHHHhhcChhhhhhhhhhHHHHhhh
Q psy6368 202 EKIIRSTLKEIIMSVDL--DEVTSKYIRSRLEDIMDSDLGEYKSFIDQL 248 (317)
Q Consensus 202 eiVIaYLMk~immS~DL--e~VksKr~R~rPN~GF~~QLkeYe~fId~e 248 (317)
+++++|||++.+|+.+. +.|+.+|+.. .|..+...|.+|++.+..-
T Consensus 114 t~~a~yL~~~~~~s~~eAi~~vr~~R~~~-i~~~Q~~~l~~~~~~~~~~ 161 (166)
T PTZ00242 114 ILVALALVEYGGMEPLDAVGFVREKRKGA-INQTQLQFLKKYKPRKKAA 161 (166)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHCCCC-chHHHHHHHHHHHHHhccC
Confidence 99999999998888875 5888888764 5788999999999876543
No 9
>KOG1719|consensus
Probab=97.46 E-value=0.00022 Score=64.28 Aligned_cols=112 Identities=11% Similarity=0.063 Sum_probs=83.7
Q ss_pred CCCccccCceeEEEEeecccCCC-----C-CCCceeeEEEeccCCCcchHHHHHHHHHhHhhcCCCC-----------CC
Q psy6368 137 PSPDSLRDKVCHILNVTREIDNF-----F-PGIFDYCNIRVYDDDKTDLLKHWDNTYKYITSAKPSQ-----------RD 199 (317)
Q Consensus 137 ~s~~~~r~kIthILNVA~ei~N~-----F-Pg~f~Yk~I~V~D~p~tdLl~hf~e~~dFId~Ar~sg-----------g~ 199 (317)
+.|..++.+++-++..+-+.+-. + --++.+..|+--|--...-+....++.+||++-.+-| ++
T Consensus 43 ~~~~i~ke~v~gvv~~ne~yE~~a~s~~wk~~giE~L~i~T~D~~~~Ps~~~i~~aVeFi~k~asLGktvYVHCKAGRtR 122 (183)
T KOG1719|consen 43 DVPLIKKENVGGVVTLNEPYELLAPSNLWKNYGIEFLVIPTRDYTGAPSLENIQKAVEFIHKNASLGKTVYVHCKAGRTR 122 (183)
T ss_pred cchHHHhcCCCeEEEeCCchhhhhhhHHHHhccceeEEeccccccCCCCHHHHHHHHHHHHhccccCCeEEEEecCCCcc
Confidence 44556778888876665332111 1 1245667777777666666677888999999744333 35
Q ss_pred cHHHHHHHHHHhccccccc--chhhhHHHHhhcChhhhhhhhhhHHHHhhh
Q psy6368 200 ETEKIIRSTLKEIIMSVDL--DEVTSKYIRSRLEDIMDSDLGEYKSFIDQL 248 (317)
Q Consensus 200 SaeiVIaYLMk~immS~DL--e~VksKr~R~rPN~GF~~QLkeYe~fId~e 248 (317)
|+|+|++|||++.+|+-+. ++++++|+++-+-++=+.-|++|..+|+.-
T Consensus 123 SaTvV~cYLmq~~~wtpe~A~~~vr~iRp~VlL~~~Qw~~l~ef~~~~~~~ 173 (183)
T KOG1719|consen 123 SATVVACYLMQHKNWTPEAAVEHVRKIRPRVLLRPAQWDVLKEFYKQIVAN 173 (183)
T ss_pred chhhhhhhhhhhcCCCHHHHHHHHHhcCcceeecHHHHHHHHHHHHHHHhc
Confidence 9999999999999999986 699999999999999999999999988754
No 10
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=97.39 E-value=0.00052 Score=60.91 Aligned_cols=94 Identities=14% Similarity=0.053 Sum_probs=67.2
Q ss_pred EEEEeecccCCCCCCCceeeEEEeccCCCcchHHHHHHHHHhHhhcCCCCC-----------CcHHHHHHHHHHhccccc
Q psy6368 148 HILNVTREIDNFFPGIFDYCNIRVYDDDKTDLLKHWDNTYKYITSAKPSQR-----------DETEKIIRSTLKEIIMSV 216 (317)
Q Consensus 148 hILNVA~ei~N~FPg~f~Yk~I~V~D~p~tdLl~hf~e~~dFId~Ar~sgg-----------~SaeiVIaYLMk~immS~ 216 (317)
.++..........+.+..+..+++.|....++ ..+.+..+||+.+.++|+ +|+++++||||++.+.+.
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~D~~~p~~-~~l~~~v~~i~~~~~~g~kVvVHC~~GigRSgtviaA~lm~~~~~~~ 135 (180)
T COG2453 57 ELLGALYNVAIEENDGIQVLHLPILDGTVPDL-EDLDKIVDFIEEALSKGKKVVVHCQGGIGRSGTVIAAYLMLYGGLSL 135 (180)
T ss_pred eccccceecceeccCCceeeeeeecCCCCCcH-HHHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHHHcCCCC
Confidence 33333333445567889999999999988888 888899999999998884 389999999999977776
Q ss_pred ccchhhhHHHHhh-cChhhhhhhhhhH
Q psy6368 217 DLDEVTSKYIRSR-LEDIMDSDLGEYK 242 (317)
Q Consensus 217 DLe~VksKr~R~r-PN~GF~~QLkeYe 242 (317)
..+.+..++-+-. ++.+..+++-.++
T Consensus 136 ~~~~i~~~~~~r~~~v~~~~q~~~~~e 162 (180)
T COG2453 136 ADEAIAVKRRRRPGAVVTEIQHLFELE 162 (180)
T ss_pred HHHHHHHHHhcCCcccccHHHHHHHHH
Confidence 6665555554433 5544444444333
No 11
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=97.09 E-value=0.00051 Score=64.96 Aligned_cols=101 Identities=10% Similarity=0.042 Sum_probs=71.8
Q ss_pred cccCceeEEEEeecccCC---CCCCCceeeEEEeccC--CCcchHHHHHHHHHhHhhcCCCCC-----------CcHHHH
Q psy6368 141 SLRDKVCHILNVTREIDN---FFPGIFDYCNIRVYDD--DKTDLLKHWDNTYKYITSAKPSQR-----------DETEKI 204 (317)
Q Consensus 141 ~~r~kIthILNVA~ei~N---~FPg~f~Yk~I~V~D~--p~tdLl~hf~e~~dFId~Ar~sgg-----------~SaeiV 204 (317)
+.+++|+.||.+.....+ +-..+|.++++++-|. |..+++..|- ++|+.....|+ ++.+++
T Consensus 112 Lk~~gV~~lVrlcE~~Yd~~~~~~~GI~~~~lpipDg~aPs~~~i~~~l---~~i~~~l~~g~~VaVHC~AGlGRTGtl~ 188 (241)
T PTZ00393 112 MKNYNVTDLVRTCERTYNDGEITSAGINVHELIFPDGDAPTVDIVSNWL---TIVNNVIKNNRAVAVHCVAGLGRAPVLA 188 (241)
T ss_pred HHHcCCCEEEECCCCCCCHHHHHHcCCeEEEeecCCCCCCCHHHHHHHH---HHHHHHHhcCCeEEEECCCCCCHHHHHH
Confidence 357899999987432111 1124689999999986 5566666665 45555444443 378888
Q ss_pred HHHHHHhccccccc--chhhhHHHHhhcChhhhhhhhhhHHHHh
Q psy6368 205 IRSTLKEIIMSVDL--DEVTSKYIRSRLEDIMDSDLGEYKSFID 246 (317)
Q Consensus 205 IaYLMk~immS~DL--e~VksKr~R~rPN~GF~~QLkeYe~fId 246 (317)
.+|||. .||+.+. +.|+++|+.+ .|......|++|++...
T Consensus 189 AayLI~-~GmspeeAI~~VR~~RPgA-In~~Q~~fL~~y~~~~~ 230 (241)
T PTZ00393 189 SIVLIE-FGMDPIDAIVFIRDRRKGA-INKRQLQFLKAYKKKKK 230 (241)
T ss_pred HHHHHH-cCCCHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcc
Confidence 888886 7898875 6888888876 68888999999998753
No 12
>PF08766 DEK_C: DEK C terminal domain; InterPro: IPR014876 DEK is a chromatin associated protein that is linked with cancers and autoimmune disease. This domain is found at the C-terminal of DEK and is of clinical importance since it can reverse the characteristic abnormal DNA-mutagen sensitivity in fibroblasts from ataxia-telangiectasia (A-T) patients []. The structure of this domain shows it to be homologous to the E2F/DP transcription factor family []. This domain is also found in chitin synthase proteins like Q8TF96 from SWISSPROT, and in protein phosphatases such as Q6NN85 from SWISSPROT. ; PDB: 1Q1V_A.
Probab=96.23 E-value=0.0037 Score=45.84 Aligned_cols=45 Identities=42% Similarity=0.654 Sum_probs=35.5
Q ss_pred HHHHHHHhcccccccchhhhHHHHhhcChhhhhhhhhhHHHHhhh
Q psy6368 204 IIRSTLKEIIMSVDLDEVTSKYIRSRLEDIMDSDLGEYKSFIDQL 248 (317)
Q Consensus 204 VIaYLMk~immS~DLe~VksKr~R~rPN~GF~~QLkeYe~fId~e 248 (317)
-|...++.++.+.|++.||.|.+|.+++..|.++|.++|.||++.
T Consensus 4 ~i~~~i~~iL~~~dl~~vT~k~vr~~Le~~~~~dL~~~K~~I~~~ 48 (54)
T PF08766_consen 4 EIREAIREILREADLDTVTKKQVREQLEERFGVDLSSRKKFIKEL 48 (54)
T ss_dssp HHHHHHHHHHTTS-GGG--HHHHHHHHHHH-SS--SHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHhHhhHHHHHHHHHHHHCCCcHHHHHHHHHH
Confidence 466677888999999999999999999999999999999999986
No 13
>KOG1720|consensus
Probab=83.27 E-value=4.2 Score=38.55 Aligned_cols=83 Identities=12% Similarity=0.094 Sum_probs=58.0
Q ss_pred cCceeEEEEeeccc---CCCCCCCceeeEEEeccC--CCcchHHHHHHHHHhHhh-------cCCCCCCcHHHHHHHHHH
Q psy6368 143 RDKVCHILNVTREI---DNFFPGIFDYCNIRVYDD--DKTDLLKHWDNTYKYITS-------AKPSQRDETEKIIRSTLK 210 (317)
Q Consensus 143 r~kIthILNVA~ei---~N~FPg~f~Yk~I~V~D~--p~tdLl~hf~e~~dFId~-------Ar~sgg~SaeiVIaYLMk 210 (317)
.++|+-|+-+.... .+|-+.+|.++..++.|- |+-++...|-+..++..+ ++.-=|+.-+.+-+|||+
T Consensus 92 ~~~v~s~vrln~~~yd~~~f~~~Gi~h~~l~f~Dg~tP~~~~v~~fv~i~e~~~~~g~iaVHCkaGlGRTG~liAc~lmy 171 (225)
T KOG1720|consen 92 NNNVTSIVRLNKRLYDAKRFTDAGIDHHDLFFADGSTPTDAIVKEFVKIVENAEKGGKIAVHCKAGLGRTGTLIACYLMY 171 (225)
T ss_pred hcccceEEEcCCCCCChHHhcccCceeeeeecCCCCCCCHHHHHHHHHHHHHHHhcCeEEEEeccCCCchhHHHHHHHHH
Confidence 56788887666555 344577899999999995 778888888888777763 111112356677789999
Q ss_pred hcccccccc--hhhhHH
Q psy6368 211 EIIMSVDLD--EVTSKY 225 (317)
Q Consensus 211 ~immS~DLe--~VksKr 225 (317)
+.+||-..+ .++..|
T Consensus 172 ~~g~ta~eaI~~lR~~R 188 (225)
T KOG1720|consen 172 EYGMTAGEAIAWLRICR 188 (225)
T ss_pred HhCCCHHHHHHHHHhcC
Confidence 999988764 444333
No 14
>cd04330 RNAP_III_Rpc25_N RNAP_III_Rpc25_N: Rpc25, N-terminal ribonucleoprotein (RNP) domain. Rpc25 is a subunit of eukaryotic RNA polymerase (RNAP) III and is homologous to Rpa43 of eukaryotic RNAP I, Rpb7 of eukaryotic RNAP II, and RpoE of archaeal RNAP. Rpc25 has two domains, an N-terminal RNP domain and a C-terminal oligonucleotide-binding (OB) domain, both of which are thought to bind single-stranded RNA. Rpc25 heterodimerizes with Rpc17 and plays an important role in transcription initiation. RNAP III transcribes diverse structural and catalytic RNAs including 5S ribosomal RNAs, tRNAs, and a small number of snRNAs involved in RNA and protein synthesis.
Probab=67.18 E-value=9 Score=30.25 Aligned_cols=35 Identities=37% Similarity=0.546 Sum_probs=28.6
Q ss_pred EEEEEEEee-----ecceEEEeCCCCeEEEeCCeeEeeccc
Q psy6368 39 TVGLVLRVL-----ADTSITLDGDGGFSVCVCGRQHIFKPV 74 (317)
Q Consensus 39 tiglvlpi~-----~dt~i~LdGDGGf~v~~~~~~~~FkPv 74 (317)
-+|+++-|| .+..| +.|||+--+...=|.-+|||.
T Consensus 40 ~~Gl~v~v~di~~i~eG~I-~~gdG~~~~~V~Fr~lvFrPf 79 (80)
T cd04330 40 NVGLCICLYDILEVEDGYI-LPGDGASHYKVTFRMVVFRPF 79 (80)
T ss_pred CccEEEEEEEeEEEcCCEE-ECCCCCEEEEEEEEEEEEECC
Confidence 479999998 34444 699999999999999999994
No 15
>PLN02727 NAD kinase
Probab=59.88 E-value=21 Score=40.38 Aligned_cols=103 Identities=21% Similarity=0.326 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHhHHh---hhcCcccCCCcchhhhhhhhhcc----CchhhHHHhhccccccccCCCCCc----cccCce
Q psy6368 78 AMWSALQSLHKVSSVA---RDKNYFLNGGSHEWVSHYEAKIA----SDRSCLNEWHAMDSLESRRPPSPD----SLRDKV 146 (317)
Q Consensus 78 ~mWsalQ~lhk~~e~a---~~~n~~~g~~~~~W~~~Y~~~I~----s~~s~~neW~al~~Les~r~~s~~----~~r~kI 146 (317)
..|--||.|+.+|=.| |.-+|=.+...--|---|-+.+. ++.+-.+.|..=| |+|+ +.++++
T Consensus 210 ~~~~~~~~l~~~~~d~~~pr~~~~p~~~~~~n~~~v~~~~~~~~~~~~~~~~~~~rsgQ-------pspe~la~LA~~Gf 282 (986)
T PLN02727 210 DVWRKLQRLKNVCYDAGFPRSDDYPCHTLFANWNPVYLSTSKEDIDSKESEAAFWRGGQ-------VTEEGLKWLLEKGF 282 (986)
T ss_pred hHHHHHHHHHhhhhhcCCCCCCCCCCcccccccceeeecccccccccccceeeEEEeCC-------CCHHHHHHHHHCCC
Confidence 4699999999999665 45566666666677777755543 3444455565544 4444 356899
Q ss_pred eEEEEeecccC--CCCC---------CCceeeEEEecc--CCCcchHHHHHHHH
Q psy6368 147 CHILNVTREID--NFFP---------GIFDYCNIRVYD--DDKTDLLKHWDNTY 187 (317)
Q Consensus 147 thILNVA~ei~--N~FP---------g~f~Yk~I~V~D--~p~tdLl~hf~e~~ 187 (317)
..|||.-.+-+ ..++ .+++|..+||.+ .+..+-+..|-+.+
T Consensus 283 KTIINLRpd~E~~q~~~~ee~eAae~~GL~yVhIPVs~~~apt~EqVe~fa~~l 336 (986)
T PLN02727 283 KTIVDLRAEIVKDNFYQAAVDDAISSGKIEVVKIPVEVRTAPSAEQVEKFASLV 336 (986)
T ss_pred eEEEECCCCCcCCCchhHHHHHHHHHcCCeEEEeecCCCCCCCHHHHHHHHHHH
Confidence 99999954433 3342 479999999965 45666666666555
No 16
>cd04331 RNAP_E_N RNAP_E_N: RpoE, N-terminal ribonucleoprotein (RNP) domain. RpoE (subunit E) is a subunit of the archaeal RNA polymerase (RNAP) that is homologous to Rpb7 of eukaryotic RNAP II, Rpc25 of eukaryotic RNAP III, and Rpa43 of eukaryotic RNAP I. RpoE heterodimerizes with RpoF, another RNA polymerase subunit. RpoE has an elongated two-domain structure that includes an N-terminal RNP domain and a C-terminal oligonucleotide-binding (OB) domain. Both domains of RpoE bind single-stranded RNA.
Probab=58.17 E-value=15 Score=29.06 Aligned_cols=36 Identities=28% Similarity=0.366 Sum_probs=27.7
Q ss_pred EEEEEEEeeecc----eEEEeCCCCeEEEeCCeeEeeccc
Q psy6368 39 TVGLVLRVLADT----SITLDGDGGFSVCVCGRQHIFKPV 74 (317)
Q Consensus 39 tiglvlpi~~dt----~i~LdGDGGf~v~~~~~~~~FkPv 74 (317)
-.|+++-|+.=. ...++|||+-.+...=|.-+|||.
T Consensus 40 ~~G~iv~v~di~~i~eG~I~~gdG~~~~~V~F~~ivFrP~ 79 (80)
T cd04331 40 DLGKIVSVLDVKDVGEGKIVHGDGAVYHEVRFDALVFKPE 79 (80)
T ss_pred CCCEEEEEEEEEEecCCEEEcCCCCEEEEEEEEEEEEecC
Confidence 468888887322 224589999999999999999995
No 17
>cd00655 RNAP_Rpb7_N_like RNAP_Rpb7_N_like: This conserved domain represents the N-terminal ribonucleoprotein (RNP) domain of the Rpb7 subunit of eukaryotic RNA polymerase (RNAP) II and its homologs, Rpa43 of eukaryotic RNAP I, Rpc25 of eukaryotic RNAP III, and RpoE (subunit E) of archaeal RNAP. These proteins have, in addition to their N-terminal RNP domain, a C-terminal oligonucleotide-binding (OB) domain. Each of these subunits heterodimerizes with another RNAP subunit (Rpb7 to Rpb4, Rpc25 to Rpc17, RpoE to RpoF, and Rpa43 to Rpa14). The heterodimer is thought to tether the RNAP to a given promoter via its interactions with a promoter-bound transcription factor.The heterodimer is also thought to bind and position nascent RNA as it exits the polymerase complex.
Probab=53.86 E-value=22 Score=28.03 Aligned_cols=35 Identities=37% Similarity=0.590 Sum_probs=27.2
Q ss_pred EEEEEEEee-----ecceEEEeCCCCeEEEeCCeeEeeccc
Q psy6368 39 TVGLVLRVL-----ADTSITLDGDGGFSVCVCGRQHIFKPV 74 (317)
Q Consensus 39 tiglvlpi~-----~dt~i~LdGDGGf~v~~~~~~~~FkPv 74 (317)
-+|+++-|+ .+-.| +.|||+--+...=|.-+|||.
T Consensus 40 ~~G~~v~v~di~~i~~G~I-~~gdG~~~~~V~F~~ivFrPf 79 (80)
T cd00655 40 VVGIILAIKDTKDIPEGAI-RPGDGSAYVNVSFRAVVFKPF 79 (80)
T ss_pred CccEEEEEEEeEEEcCCEE-ECCCCCEEEEEEEEEEEEEcC
Confidence 368888776 33334 589999999999999999994
No 18
>cd04329 RNAP_II_Rpb7_N RNAP_II_Rpb7_N: Rpb7, N-terminal ribonucleoprotein (RNP) domain. Rpb7 is a subunit of eukaryotic RNA polymerase (RNAP) II that is homologous to Rpc25 of RNAP III, RpoE of archaeal RNAP, and Rpa43 of eukaryotic RNAP I. Rpb7 heterodimerizes with Rpb4 and this heterodimer binds the 10-subunit core of RNAP II, forming part of the floor of the DNA-binding cleft. Rpb7 has two domains, an N-terminal RNP domain and a C-terminal oligonucleotide-binding (OB) domain, both of which bind single-stranded RNA. Rpb7 is thought to interact with the nascent RNA strand as it exits the RNAP II complex during transcription elongation. The Rpb7/Rpb4 heterodimer is also thought to serve as an upstream interface between the C-terminal domain of Rpb1 and the transcription factor IIB (TFIIB), recruiting pol II to the pol II promoter.
Probab=52.29 E-value=31 Score=27.22 Aligned_cols=36 Identities=25% Similarity=0.360 Sum_probs=28.1
Q ss_pred EEEEEEEeeecce----EEEeCCCCeEEEeCCeeEeeccc
Q psy6368 39 TVGLVLRVLADTS----ITLDGDGGFSVCVCGRQHIFKPV 74 (317)
Q Consensus 39 tiglvlpi~~dt~----i~LdGDGGf~v~~~~~~~~FkPv 74 (317)
-+|+++-||.=.. ..+.|||+-.+...=+.-+|||.
T Consensus 40 ~~G~iv~v~di~~i~~G~I~~gdG~~~~~V~F~aivfrPf 79 (80)
T cd04329 40 DYGYIIAVTDIDDIGEGKILPGTGSVEFPVKYKAIVFKPF 79 (80)
T ss_pred ceeEEEEEEEeeEecCcEEEcCCCCEEEEEEEEEEEEEcc
Confidence 5788888884222 24689999999999999999994
No 19
>PF09792 But2: Ubiquitin 3 binding protein But2 C-terminal domain; InterPro: IPR018620 This entry represents a presumed C-terminal domain of ubiquitin 3 binding proteins (But2). But2 is conserved in yeasts. It binds to Uba3 and is involved in the NEDD8 signalling pathway [].
Probab=50.38 E-value=42 Score=29.41 Aligned_cols=59 Identities=24% Similarity=0.418 Sum_probs=44.4
Q ss_pred cccccCCCCc---eeEEEEEecCCCceeeEEEecccCC-----CeEEEEEEEe---eecceEEEeCCCCeEEEe
Q psy6368 2 VKLESVHPDR---TRYLVVVSCDEQGDESCLLGIDCNQ-----TTTVGLVLRV---LADTSITLDGDGGFSVCV 64 (317)
Q Consensus 2 v~les~~~~~---~Ryl~vvs~~~~~ee~~llG~d~~~-----~~tiglvlpi---~~dt~i~LdGDGGf~v~~ 64 (317)
|.+.+..|++ +-|-.+|+.. .+-|+-+|++. .|.+-+.||- .....-.++|+|.|.|..
T Consensus 8 vpi~~s~P~~a~gt~~~~~Vs~~----vsTIfnFDiP~~~~~k~CsL~F~fP~~~~~~~s~~~~~G~g~~~f~~ 77 (143)
T PF09792_consen 8 VPIDSSNPNKAFGTSYNGQVSST----VSTIFNFDIPASYQGKTCSLVFLFPTQDDLKTSPYSFSGPGNFDFSN 77 (143)
T ss_pred EecCccCCCCcCCCcceeEECCc----EEEEEEeccCCCCCCCeEEEEEEcCCcccccccceEecCCceEEEEE
Confidence 3445556666 6678888765 78899999964 5999888887 334566899999998865
No 20
>PF02831 gpW: gpW; InterPro: IPR004174 GpW is a 68 residue protein known to be present in phage particles. Extracts of phage-infected cells lacking GpW contain DNA-filled heads, and active tails, but no infectious virions. GpW is required for the addition of GpFII to the head, which is, in turn, required for the attachment of tails. Since GpFII and tails are known to be attached at the connector, GpW is also likely to assemble at this site. The addition of GpW to filled heads increases the DNase resistance of the packaged DNA, suggesting that GpW either forms a plug at the connector to prevent ejection of the DNA, or binds directly to the DNA. The large number of positively charged residues in GpW (its calculated pI is 10.8) is consistent with a role in DNA interaction [].; GO: 0019067 viral assembly, maturation, egress, and release; PDB: 2L6Q_A 2L6R_A 1HYW_A.
Probab=46.94 E-value=52 Score=25.79 Aligned_cols=38 Identities=18% Similarity=0.234 Sum_probs=32.4
Q ss_pred CCCCeEEEeCCeeEeeccchHHHHHHHHHHHHHHhHHh
Q psy6368 56 GDGGFSVCVCGRQHIFKPVSVQAMWSALQSLHKVSSVA 93 (317)
Q Consensus 56 GDGGf~v~~~~~~~~FkPvSVq~mWsalQ~lhk~~e~a 93 (317)
|....+|+.+|+.--|.++|+..|+..++.|..++-.+
T Consensus 20 G~~vvsv~~dgrsV~Yt~a~i~~L~~yI~~L~~~Lg~~ 57 (68)
T PF02831_consen 20 GQRVVSVQGDGRSVTYTQANIGDLRAYIQQLEAQLGIV 57 (68)
T ss_dssp S-SEEEEEETTEEEEEEGGGHHHHHHHHHHHHHHTTST
T ss_pred CCceeEeecCCeEEEEecCCHHHHHHHHHHHHHHhCcC
Confidence 66777788889999999999999999999998887554
No 21
>PF15432 Sec-ASP3: Accessory Sec secretory system ASP3
Probab=41.34 E-value=25 Score=30.58 Aligned_cols=67 Identities=16% Similarity=0.329 Sum_probs=52.0
Q ss_pred hhhhhccCchhhHHHhhccccccccC-CCCCccccCceeEEEEeecccCCCCCCCceeeEEEeccCCCcch
Q psy6368 110 HYEAKIASDRSCLNEWHAMDSLESRR-PPSPDSLRDKVCHILNVTREIDNFFPGIFDYCNIRVYDDDKTDL 179 (317)
Q Consensus 110 ~Y~~~I~s~~s~~neW~al~~Les~r-~~s~~~~r~kIthILNVA~ei~N~FPg~f~Yk~I~V~D~p~tdL 179 (317)
+|++..-.+-..|.+|.-...-+..| .|+--++|.+.++-|.+-.++ -|++..|..|..+|.-++.|
T Consensus 17 ~f~N~lmpsG~~I~~W~S~~nyq~~r~~P~LPlLk~G~~Y~l~~~~~~---~P~~svylki~F~dr~~e~i 84 (128)
T PF15432_consen 17 YFENPLMPSGTVIHSWYSQTNYQADRTVPSLPLLKRGHTYQLKFNIDV---VPENSVYLKIIFFDRQGEEI 84 (128)
T ss_pred EEEccCCCCCCEeEEEECcceeecCCcCCCCCEecCCCEEEEEEEEEE---ccCCeEEEEEEEEccCCCEe
Confidence 57777888888999999998888877 455556788888877664443 38999999999999876543
No 22
>COG4825 Uncharacterized membrane-anchored protein conserved in bacteria [Function unknown]
Probab=40.41 E-value=26 Score=35.22 Aligned_cols=60 Identities=25% Similarity=0.339 Sum_probs=39.9
Q ss_pred cchHHHHHHHHHhHhhcCCCCCCcHHHHHHHHHHhcccccccchh-hhHHHH-hhcChhhhhhhhhhHHHHhhh
Q psy6368 177 TDLLKHWDNTYKYITSAKPSQRDETEKIIRSTLKEIIMSVDLDEV-TSKYIR-SRLEDIMDSDLGEYKSFIDQL 248 (317)
Q Consensus 177 tdLl~hf~e~~dFId~Ar~sgg~SaeiVIaYLMk~immS~DLe~V-ksKr~R-~rPN~GF~~QLkeYe~fId~e 248 (317)
+-+..+|..+++||.+.. .|+.-..|.. |+.++ +-+.+- ..++++|-..|+++|+||..-
T Consensus 145 ~r~eaffgNTi~fiksE~-----------pllidg~gIP-D~~n~~~gR~VlIva~~~~~~~dLk~lk~fi~ey 206 (395)
T COG4825 145 ERLEAFFGNTIEFIKSES-----------PLLIDGIGIP-DLDNDLRGRHVLIVADEPSFEDDLKSLKPFIKEY 206 (395)
T ss_pred HHHHHHhccHHHHHhccC-----------hhhhcCCCCC-cccchhcccEEEEEeCCCChHhHHHHHHHHHHhh
Confidence 334567888889996432 3444566664 55444 222222 699999999999999999754
No 23
>COG3222 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.15 E-value=37 Score=31.89 Aligned_cols=63 Identities=24% Similarity=0.413 Sum_probs=47.0
Q ss_pred ceeeEEEecccCC--------C----eEEEEEEEeeecceEEEeCCCCeEEEeCCeeEeeccchHHHH-HHHHHHHHHHh
Q psy6368 24 GDESCLLGIDCNQ--------T----TTVGLVLRVLADTSITLDGDGGFSVCVCGRQHIFKPVSVQAM-WSALQSLHKVS 90 (317)
Q Consensus 24 ~ee~~llG~d~~~--------~----~tiglvlpi~~dt~i~LdGDGGf~v~~~~~~~~FkPvSVq~m-WsalQ~lhk~~ 90 (317)
.+..+++||||+. . -+|-+||= .==|||.-+-.=.+ |-|-=..+| |+.=+++|..|
T Consensus 104 ~~~VliIg~DcP~lt~elLa~a~taL~~~paVLG--------pa~dGGy~llgLrr---~~pe~fe~ipwg~~~v~~lTl 172 (211)
T COG3222 104 SYPVLIIGMDCPGLTAELLADAFTALLQIPAVLG--------PAFDGGYYLLGLRR---FAPELFEAIPWGTPDVLELTL 172 (211)
T ss_pred CCcEEEEecCCCccCHHHHHHHHHHHhcCcceec--------ccccCcEEEEEeec---cCHHHHhcCCCCCchHHHHHH
Confidence 3778999999973 1 23333331 11289998876555 888888887 99999999999
Q ss_pred HHhhhcC
Q psy6368 91 SVARDKN 97 (317)
Q Consensus 91 e~a~~~n 97 (317)
+.+|.++
T Consensus 173 ~~lrqng 179 (211)
T COG3222 173 KALRQNG 179 (211)
T ss_pred HHHHHcC
Confidence 9999887
No 24
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=35.75 E-value=23 Score=31.62 Aligned_cols=24 Identities=21% Similarity=0.358 Sum_probs=18.4
Q ss_pred cceEEEeCCCCeEEEeCCeeEeeccchHHHHHHHHH
Q psy6368 49 DTSITLDGDGGFSVCVCGRQHIFKPVSVQAMWSALQ 84 (317)
Q Consensus 49 dt~i~LdGDGGf~v~~~~~~~~FkPvSVq~mWsalQ 84 (317)
..-|-+.|||||..+ +|.||++-+
T Consensus 76 ~~vv~i~GDG~f~m~------------~~eL~Ta~~ 99 (202)
T cd02006 76 RQVVALSGDYDFQFM------------IEELAVGAQ 99 (202)
T ss_pred CeEEEEEeChHhhcc------------HHHHHHHHH
Confidence 356889999999875 677777654
No 25
>cd04328 RNAP_I_Rpa43_N RNAP_I_Rpa43_N: Rpa43, N-terminal ribonucleoprotein (RNP) domain. Rpa43 is a subunit of eukaryotic RNA polymerase (RNAP) I that is homologous to Rpb7 of eukaryotic RNAP II, Rpc25 of eukaryotic RNP III, and RpoE of archaeal RNAP. Rpa43 has two domains, an N-terminal RNP domain and a C-terminal oligonucleotide-binding (OB) domain. Rpa43 heterodimerizes with Rpa14 and this heterodimer has genetic and biochemical characteristics similar to those of the Rpb7/Rpb4 heterodimer of RNAP II. In addition, the Rpa43/Rpa14 heterodimer binds single-stranded RNA, as is the case for the Rpb7/Rpb4 and the archaeal E/F complexes. The position of Rpa43/Rpa14 in the three-dimensional structure of RNAP I is similar to that of Rpb4/Rpb7, which forms an upstream interface between the C-terminal domain of Rpb1 and the transcription factor IIB (TFIIB), recruiting pol II to the pol II promoter. Rpb43 binds Rrn3, an rDNA-specific transcription factor, functionally equivalent to TFIIB, invo
Probab=35.18 E-value=47 Score=26.31 Aligned_cols=37 Identities=19% Similarity=0.290 Sum_probs=26.3
Q ss_pred eEE-EEEEEeee------cceEEEeCCCCeEEEeCCeeEeeccc
Q psy6368 38 TTV-GLVLRVLA------DTSITLDGDGGFSVCVCGRQHIFKPV 74 (317)
Q Consensus 38 ~ti-glvlpi~~------dt~i~LdGDGGf~v~~~~~~~~FkPv 74 (317)
-.+ |++|-.|. ++....||||.+-+...=+..+|||-
T Consensus 45 ~~l~Gv~l~~~di~~~~~~~~~i~~~~~~~~~~V~~~~lVFrP~ 88 (89)
T cd04328 45 PKLKGVVLAYSNIKLLEGELAKIVDDSPFIFVWISADFLVFRPK 88 (89)
T ss_pred ccCCeEEEEecceEeccccceeeeCCCcEEEEEEEEEEEEEecC
Confidence 345 77777652 12223688898888889999999993
No 26
>PF00207 A2M: Alpha-2-macroglobulin family; InterPro: IPR001599 This entry contains serum complement C3 and C4 precursors and alpha-macrogrobulins. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0004866 endopeptidase inhibitor activity; PDB: 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 2PN5_A 3FRP_G 3HRZ_B ....
Probab=32.26 E-value=35 Score=26.81 Aligned_cols=41 Identities=24% Similarity=0.387 Sum_probs=30.6
Q ss_pred CeEEEEEEEe----eecceEEEeCCCCeEEEeCCeeEeeccchHH
Q psy6368 37 TTTVGLVLRV----LADTSITLDGDGGFSVCVCGRQHIFKPVSVQ 77 (317)
Q Consensus 37 ~~tiglvlpi----~~dt~i~LdGDGGf~v~~~~~~~~FkPvSVq 77 (317)
+.++-..||= |+=+-+-++.++||-+...-.+.+|||+.|+
T Consensus 15 ~~~~~~~lPd~it~w~v~a~a~s~~~~~g~~~~~~~~v~~p~~i~ 59 (92)
T PF00207_consen 15 KATFSFTLPDSITSWRVTAFAVSPTGGFGIAEPPEITVFKPFFIQ 59 (92)
T ss_dssp EEEEEEE-SSSSSEEEEEEEEEETTTEEEEECCEEEEEB-SEEEE
T ss_pred EEEEEEECCCCccEEEEEEEEECCCCcceEecceEEEEEeeEEEE
Confidence 3444444442 7777899999999999988899999999875
No 27
>TIGR03711 acc_sec_asp3 accessory Sec system protein Asp3. This protein is designated Asp3 because, along with SecY2, SecA2, and other proteins it is part of the accessory Sec system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=31.67 E-value=43 Score=29.58 Aligned_cols=67 Identities=16% Similarity=0.336 Sum_probs=51.4
Q ss_pred hhhhhccCchhhHHHhhccccccccCC-CCCccccCceeEEEEeecccCCCCCCCceeeEEEeccCCCcch
Q psy6368 110 HYEAKIASDRSCLNEWHAMDSLESRRP-PSPDSLRDKVCHILNVTREIDNFFPGIFDYCNIRVYDDDKTDL 179 (317)
Q Consensus 110 ~Y~~~I~s~~s~~neW~al~~Les~r~-~s~~~~r~kIthILNVA~ei~N~FPg~f~Yk~I~V~D~p~tdL 179 (317)
+|++..-.+-..|.+|.-+..-+..|. |+.-++|.+-++.|.+-.+ .-|.+..|.+|..+|..++.+
T Consensus 28 ~feN~lMpsG~~I~~W~S~~nyq~~r~~P~LPlLk~g~~Y~i~~n~~---~~P~~s~~~ki~F~dr~~~ei 95 (135)
T TIGR03711 28 YFENPLMPSGETIHTWSSLTNYQAARTVPSLPLLKRGQTYKLSLNAD---ASPEGSVYLKITFFDRQGEEI 95 (135)
T ss_pred EEeccCCCCCCEEEEEEeeecccccCCCCCCcEEcCCCEEEEEEeee---eCCCceEEEEEEEeccCCcee
Confidence 678888888999999999988888874 4434577777777655322 468999999999999876544
No 28
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=31.35 E-value=1.1e+02 Score=26.32 Aligned_cols=31 Identities=16% Similarity=0.222 Sum_probs=20.3
Q ss_pred CCceeeEEEeccCCCcchHHHHHHHHHhHhhc
Q psy6368 162 GIFDYCNIRVYDDDKTDLLKHWDNTYKYITSA 193 (317)
Q Consensus 162 g~f~Yk~I~V~D~p~tdLl~hf~e~~dFId~A 193 (317)
.++.|.+||+.|.. ...-+.|++=++|+...
T Consensus 91 ~g~~Y~Ripitd~~-~P~~~~iD~fi~~v~~~ 121 (149)
T PF14566_consen 91 NGLRYYRIPITDHQ-APDPEDIDAFINFVKSL 121 (149)
T ss_dssp TT-EEEEEEE-TTS----HHHHHHHHHHHHTS
T ss_pred CCceEEEEeCCCcC-CCCHHHHHHHHHHHHhC
Confidence 56899999999983 34556677777888766
No 29
>PF06172 Cupin_5: Cupin superfamily (DUF985); InterPro: IPR009327 This is a family of uncharacterised proteins found in bacteria and eukaryotes.; PDB: 1ZNP_G 1XE8_B 1XE7_A 3M3I_F 3LOI_A 3LZZ_B 1YUD_D.
Probab=27.24 E-value=1.2e+02 Score=26.56 Aligned_cols=48 Identities=21% Similarity=0.403 Sum_probs=34.7
Q ss_pred EEEEecCCCceeeEEEecccCCCeEEEEEEEe--eecceEEEeCCCCeEEEeC
Q psy6368 15 LVVVSCDEQGDESCLLGIDCNQTTTVGLVLRV--LADTSITLDGDGGFSVCVC 65 (317)
Q Consensus 15 l~vvs~~~~~ee~~llG~d~~~~~tiglvlpi--~~dt~i~LdGDGGf~v~~~ 65 (317)
+.++..+| .-++++||.|....-..-+|+|- |.-+.+ ++.|+|++.++
T Consensus 75 l~~i~~dg-~~~~~~LG~d~~~g~~~q~vVp~G~W~aa~l--~~~~~y~Lvsc 124 (139)
T PF06172_consen 75 LHLIDPDG-SYETVVLGPDLAAGERPQVVVPAGTWQAAEL--EPEGDYSLVSC 124 (139)
T ss_dssp EEEECTTS-TEEEEEESSTTCTTEBSEEEE-TTSEEEEEE--CESSSEEEEEE
T ss_pred EEEEcCCC-CeEEEEECCCCCCCceEEEEECCCEEEEccc--cCCCCEEEEEE
Confidence 34455555 67779999999665566778885 887775 88888888776
No 30
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=25.30 E-value=47 Score=29.16 Aligned_cols=22 Identities=41% Similarity=0.730 Sum_probs=16.7
Q ss_pred ceEEEeCCCCeEEEeCCeeEeeccchHHHHHHHH
Q psy6368 50 TSITLDGDGGFSVCVCGRQHIFKPVSVQAMWSAL 83 (317)
Q Consensus 50 t~i~LdGDGGf~v~~~~~~~~FkPvSVq~mWsal 83 (317)
.-|.+-|||||. .++|.||++-
T Consensus 70 ~vv~i~GDG~f~------------~~~~eL~ta~ 91 (186)
T cd02015 70 TVICIDGDGSFQ------------MNIQELATAA 91 (186)
T ss_pred eEEEEEcccHHh------------ccHHHHHHHH
Confidence 467899999998 3567787764
No 31
>PRK07064 hypothetical protein; Provisional
Probab=23.42 E-value=36 Score=34.75 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=18.1
Q ss_pred ceEEEeCCCCeEEEeCCeeEeeccchHHHHHHHHH
Q psy6368 50 TSITLDGDGGFSVCVCGRQHIFKPVSVQAMWSALQ 84 (317)
Q Consensus 50 t~i~LdGDGGf~v~~~~~~~~FkPvSVq~mWsalQ 84 (317)
.-|.+.|||||..+ +|.||++.+
T Consensus 425 ~vv~i~GDGsf~m~------------~~eL~Ta~~ 447 (544)
T PRK07064 425 KTVGLVGDGGLMLN------------LGELATAVQ 447 (544)
T ss_pred cEEEEEcchHhhhh------------HHHHHHHHH
Confidence 56889999999654 688888754
No 32
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=21.54 E-value=58 Score=29.07 Aligned_cols=23 Identities=17% Similarity=0.562 Sum_probs=17.6
Q ss_pred ceEEEeCCCCeEEEeCCeeEeeccchHHHHHHHHH
Q psy6368 50 TSITLDGDGGFSVCVCGRQHIFKPVSVQAMWSALQ 84 (317)
Q Consensus 50 t~i~LdGDGGf~v~~~~~~~~FkPvSVq~mWsalQ 84 (317)
.-|-+.|||||..+ +|.||++-|
T Consensus 73 ~vv~i~GDG~f~m~------------~~eL~Ta~~ 95 (196)
T cd02013 73 PVVAIAGDGAWGMS------------MMEIMTAVR 95 (196)
T ss_pred cEEEEEcchHHhcc------------HHHHHHHHH
Confidence 45889999999753 577887665
No 33
>PRK09812 toxin ChpB; Provisional
Probab=20.68 E-value=1.8e+02 Score=24.32 Aligned_cols=13 Identities=23% Similarity=0.199 Sum_probs=10.8
Q ss_pred CceeEEEEEecCC
Q psy6368 10 DRTRYLVVVSCDE 22 (317)
Q Consensus 10 ~~~Ryl~vvs~~~ 22 (317)
++.|+.+|||.+.
T Consensus 27 gk~RP~vVvS~d~ 39 (116)
T PRK09812 27 GAGRPALVLSVAA 39 (116)
T ss_pred CCcCeEEEEccch
Confidence 4579999999876
Done!