RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6368
(317 letters)
>gnl|CDD|212166 cd11652, SSH-N, N-terminal domain conserved in slingshot (SSH)
phosphatases. This domain or region conserved in
Bilateria is found N-terminal to the DEK_C-like and
catalytic domains of slingshot phosphatases. Slingshot
is a cofilin-specific phosphatase. Dephosphorylation
reactivates cofilin, which in turn depolymerizes actin
and is thus required for actin filament reorganization.
Slingshot is a member of the dual-specificity protein
phosphatase family. This N-terminal SSH region may be
involved in P-cofilin binding (the model C-terminus plus
the DEK_C-like domain, which are characterized as the
"B" domain in some of the literature), and may be
required for the F-actin mediated activation of
slingshot (the N-terminal region of this model,
sometimes referred to as the "A" domain).
Length = 233
Score = 226 bits (579), Expect = 7e-74
Identities = 87/143 (60%), Positives = 105/143 (73%), Gaps = 5/143 (3%)
Query: 1 AVKLESVHPDRTRYLVVVSCDEQGD--ESCLLGIDCNQ---TTTVGLVLRVLADTSITLD 55
AV+LESV +RTRYLVVVS + D ES LLG+D + T+GLVL + +DT + LD
Sbjct: 91 AVRLESVRSNRTRYLVVVSTLGRQDTEESILLGVDFPPKESSCTIGLVLPIWSDTQVHLD 150
Query: 56 GDGGFSVCVCGRQHIFKPVSVQAMWSALQSLHKVSSVARDKNYFLNGGSHEWVSHYEAKI 115
GDGGFSV G+ HIFKPVSVQAMWSALQ LHK VAR+ NYF G + WVS+Y+++I
Sbjct: 151 GDGGFSVTSDGKTHIFKPVSVQAMWSALQVLHKACEVAREANYFPGGLALTWVSYYQSRI 210
Query: 116 ASDRSCLNEWHAMDSLESRRPPS 138
+SD+SCLNEW AMD LES RP S
Sbjct: 211 SSDQSCLNEWEAMDDLESHRPDS 233
>gnl|CDD|204056 pfam08766, DEK_C, DEK C terminal domain. DEK is a chromatin
associated protein that is linked with cancers and
autoimmune disease. This domain is found at the C
terminal of DEK and is of clinical importance since it
can reverse the characteristic abnormal DNA-mutagen
sensitivity in fibroblasts from ataxia-telangiectasia
(A-T) patients. The structure of this domain shows it to
be homologous to the E2F/DP transcription factor family.
This domain is also found in chitin synthase proteins
and in protein phosphatases.
Length = 54
Score = 60.2 bits (147), Expect = 3e-12
Identities = 20/48 (41%), Positives = 29/48 (60%)
Query: 201 TEKIIRSTLKEIIMSVDLDEVTSKYIRSRLEDIMDSDLGEYKSFIDQL 248
T++ I+ ++EI+ DL+ VT K IR LE + DL E K+FI L
Sbjct: 1 TDEEIKEEIREILREADLETVTKKQIRKELEARLGVDLSERKAFIKDL 48
>gnl|CDD|214551 smart00195, DSPc, Dual specificity phosphatase, catalytic domain.
Length = 138
Score = 46.9 bits (112), Expect = 1e-06
Identities = 12/53 (22%), Positives = 27/53 (50%)
Query: 145 KVCHILNVTREIDNFFPGIFDYCNIRVYDDDKTDLLKHWDNTYKYITSAKPSQ 197
+ H++NVT E+ N+ F Y + + D+ +T + ++ ++I A+
Sbjct: 26 GITHVINVTNEVPNYNGSDFTYLGVPIDDNTETKISPYFPEAVEFIEDAESKG 78
>gnl|CDD|238073 cd00127, DSPc, Dual specificity phosphatases (DSP); Ser/Thr and Tyr
protein phosphatases. Structurally similar to
tyrosine-specific phosphatases but with a shallower
active site cleft and a distinctive active site
signature motif, HCxxGxxR. Characterized as VHR- or
Cdc25-like.
Length = 139
Score = 39.9 bits (94), Expect = 3e-04
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 148 HILNVTREI--DNFFPGIFDYCNIRVYDDDKTDLLKHWDNTYKYITSAK 194
H+LNV +E+ +N F F+Y + + D D+ K++D +I A+
Sbjct: 30 HVLNVAKEVPNENLFLSDFNYLYVPILDLPSQDISKYFDEAVDFIDDAR 78
>gnl|CDD|214581 smart00244, PHB, prohibitin homologues. prohibitin homologues.
Length = 160
Score = 36.5 bits (85), Expect = 0.006
Identities = 13/94 (13%), Positives = 39/94 (41%), Gaps = 4/94 (4%)
Query: 175 DKTDLLKHWDNTYKYITSAKPSQRDETEKIIRSTLKEIIMSVDLDEVTSKY---IRSRLE 231
D + D + + + E++ ++TL+ +I LDE+ + I +
Sbjct: 66 DAVVYYRVLD-PLRAVYRVLDADYAVIEQLAQTTLRSVIGKRTLDELLTDQREKISENIR 124
Query: 232 DIMDSDLGEYKSFIDQLEFRNLLIEGGVKSRVYA 265
+ ++ + ++ +E +++ + +K + A
Sbjct: 125 EELNEAAEAWGIKVEDVEIKDIRLPEEIKEAMEA 158
>gnl|CDD|216117 pfam00782, DSPc, Dual specificity phosphatase, catalytic domain.
Ser/Thr and Tyr protein phosphatases. The enzyme's
tertiary fold is highly similar to that of
tyrosine-specific phosphatases, except for a
"recognition" region.
Length = 131
Score = 34.2 bits (79), Expect = 0.027
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 148 HILNVTREIDNF-FPGIFDYCNIRVYDDDKTDLLKHWDNTYKYITSAK 194
H++NVTRE+ N Y I V D+ +T++ K+ ++I A
Sbjct: 21 HVINVTREVPNSNLNSGILYLGIPVEDNHETNISKYLPEAVEFIDDAI 68
>gnl|CDD|239024 cd02106, Band_7, The band 7 domain of flotillin (reggie) like
proteins. This group contains proteins similar to
stomatin, prohibitin, flotillin, HlfK/C and podicin.
Many of these band 7 domain-containing proteins are
lipid raft-associated. Individual proteins of this band
7 domain family may cluster to form membrane
microdomains which may in turn recruit multiprotein
complexes. Microdomains formed from flotillin proteins
may in addition be dynamic units with their own
regulatory functions. Flotillins have been implicated
in signal transduction, vesicle trafficking,
cytoskeleton rearrangement and are known to interact
with a variety of proteins. Stomatin interacts with and
regulates members of the degenerin/epithelia Na+ channel
family in mechanosensory cells of Caenorhabditis elegans
and vertebrate neurons and participates in trafficking
of Glut1 glucose transporters. Prohibitin may act as a
chaperone for the stabilization of mitochondrial
proteins. Prokaryotic HflK/C plays a role in the
decision between lysogenic and lytic cycle growth during
lambda phage infection. Flotillins have been implicated
in the progression of prion disease, in the pathogenesis
of neurodegenerative diseases such as Parkinson's and
Alzheimer's disease and, in cancer invasion and
metastasis. Mutations in the podicin gene give rise to
autosomal recessive steroid resistant nephritic
syndrome.
Length = 121
Score = 33.1 bits (76), Expect = 0.047
Identities = 12/79 (15%), Positives = 32/79 (40%), Gaps = 2/79 (2%)
Query: 189 YITSAKPSQRDETEKIIRSTLKEIIMSVDLDEVTSKY--IRSRLEDIMDSDLGEYKSFID 246
P + ++ +S L+ +I + LDE+ I + + + + DL +Y +
Sbjct: 41 LYNVRDPEDEEALRQLAQSALRSVIGKMTLDELLEDRDEIAAEVREALQEDLDKYGIEVV 100
Query: 247 QLEFRNLLIEGGVKSRVYA 265
+ +++ V+ +
Sbjct: 101 DVRIKDIDPPEEVQEAMED 119
>gnl|CDD|223407 COG0330, HflC, Membrane protease subunits, stomatin/prohibitin
homologs [Posttranslational modification, protein
turnover, chaperones].
Length = 291
Score = 31.6 bits (72), Expect = 0.42
Identities = 12/87 (13%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
Query: 182 HWDNTYKYITSAKPSQRDETEKIIRSTLKEIIMSVDLDEVTSK---YIRSRLEDIMDSDL 238
+ K + + + ++ ++++S L+ +I + LDE+ ++ I +++ +I+D
Sbjct: 96 RVTDPQKAVYNVENAEA-ALRQLVQSALRSVIGRMTLDELLTERRAEINAKIREILDEAA 154
Query: 239 GEYKSFIDQLEFRNLLIEGGVKSRVYA 265
+ + +E +++ V++ +
Sbjct: 155 DPWGIKVVDVEIKDIDPPEEVQAAMEK 181
>gnl|CDD|193531 cd05654, M20_ArgE_RocB, M20 Peptidase Arginine utilization protein,
RocB. Peptidase M20 family, ArgE RocB (Arginine
utilization protein, RocB; arginine degradation protein,
RocB) subfamily. This group of proteins is possibly
related to acetylornithine deacetylase (ArgE) and may be
involved in the arginine and/or ornithine degradation
pathway. In Bacillus subtilis, RocB is one of the three
genes found in the rocABC operon, which is sigma L
dependent and induced by arginine. The function of
members of this family is as yet unknown, although they
are predicted as deacetylases.
Length = 535
Score = 31.4 bits (72), Expect = 0.67
Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 5/53 (9%)
Query: 140 DSLRDKVCHILNVTREIDNFFPGIFD--YCNIRVYDDDKTDLLKH---WDNTY 187
+ L+ + T ++ ++FPGI D Y + + L + W Y
Sbjct: 431 EELKKEAKEKFGETLKVKHYFPGISDLSYLGLDDDLEGIESLKDNMPGWGKLY 483
>gnl|CDD|222469 pfam13949, ALIX_LYPXL_bnd, ALIX V-shaped domain binding to HIV.
The binding of the LYPxL motif of late HIV p6Gag and
EIAV p9Gag to this domain is necessary for viral
budding.This domain is generally central between an
N-terminal Bro1 domain, pfam03097 and a C-terminal
proline-rich domain. The retroviruses thus used this
domain to hijack the ESCRT system of the cell.
Length = 292
Score = 30.4 bits (69), Expect = 1.3
Identities = 8/54 (14%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 196 SQRDETEKIIRSTLKEIIMSVDLDEVTSKYIRSRLEDIMDSDLGEYKSFIDQLE 249
++R++ + ++ ++ +S L +K S E + + +L ++ +++E
Sbjct: 158 AEREKLLEELKEKAQDDDISKLLIA-LNKLGSSNEEQLFEEELKKFDPLQERVE 210
>gnl|CDD|202573 pfam03210, Paramyx_P_V_C, Paramyxovirus P/V phosphoprotein
C-terminal. Paramyxoviridae P genes are able to
generate more than one product, using alternative
reading frames and RNA editing. The P gene encodes the
structural phosphoprotein P. In addition, it encodes
several non-structural proteins present in the infected
cell but not in the virus particle. This family includes
phosphoprotein P and the non-structural phosphoprotein V
from different paramyxoviruses. Phosphoprotein P is
essential for the activity of the RNA polymerase complex
which it forms with another subunit, L pfam00946.
Although all the catalytic activities of the polymerase
are associated with the L subunit, its function requires
specific interactions with phosphoprotein P. The P and V
phosphoproteins are amino co-terminal, but diverge at
their C-termini. This difference is generated by an
RNA-editing mechanism in which one or two non-templated
G residues are inserted into P-gene-derived mRNA. In
measles virus and Sendai virus, one G residue is
inserted and the edited transcript encodes the V
protein. In mumps, simian virus type 5 and Newcastle
disease virus, two G residues are inserted, and the
edited transcript codes for the P protein. Being
phosphoproteins, both P and V are rich in serine and
threonine residues over their whole lengths. In
addition, the V proteins are rich in cysteine residues
at the C-termini. This C-terminal region of the P
phosphoprotein is likely to be the nucleocapsid-binding
domain, and is found to be intrinsically disordered and
thus liable to induced folding.
Length = 155
Score = 29.1 bits (66), Expect = 1.6
Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 3/71 (4%)
Query: 176 KTDLLKHWDNTYKYITSAKPSQRDETEKIIRSTLKEIIMSVDLDEVTSKYIRSRLEDI-M 234
+L + + KPS +D + + L+ +I S L+ + S L
Sbjct: 86 LDELARPIPSKSSSAVGFKPSGKDLSG--EKEVLRALIKSRILNPDKKAKLLSLLNAAKT 143
Query: 235 DSDLGEYKSFI 245
+ DL E K I
Sbjct: 144 EDDLKEIKRMI 154
>gnl|CDD|216327 pfam01145, Band_7, SPFH domain / Band 7 family. This family has
been called SPFH, Band 7 or PHB domain. Recent
phylogenetic analysis has shown this domain to be a
slipin or Stomatin-like integral membrane domain
conserved from protozoa to mammals.
Length = 177
Score = 28.5 bits (64), Expect = 2.9
Identities = 14/74 (18%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 184 DNTYKYITSAKPSQRDET--EKIIRSTLKEIIMSVDLDEVTSK--YIRSRLEDIMDSDLG 239
++ K + + + + ++RS L+E+I LDE+ S I +++ + +L
Sbjct: 72 EDPAKLVANYTGEEDLQELLRPLVRSALREVIARYTLDELLSNREEIAQEVKEALQEELE 131
Query: 240 EYKSFIDQLEFRNL 253
+Y I+ ++ ++
Sbjct: 132 KYGLEIEDVQITDI 145
>gnl|CDD|212670 cd10228, HSPA4_like_NDB, Nucleotide-binding domain of 105/110 kDa
heat shock proteins including HSPA4 and similar
proteins. This subgroup includes the human proteins,
HSPA4 (also known as 70-kDa heat shock protein 4, APG-2,
HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps
to 5q31.1), HSPA4L (also known as 70-kDa heat shock
protein 4-like, APG-1, HSPH3, and OSP94; the human
HSPA4L gene maps to 4q28), and HSPH1 (also known as heat
shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B;
NY-CO-25; the human HSPH1 gene maps to 13q12.3),
Saccharomyces cerevisiae Sse1p and Sse2p, and a sea
urchin sperm receptor. It belongs to the 105/110 kDa
heat shock protein (HSP105/110) subfamily of the
HSP70-like family, and includes proteins believed to
function generally as co-chaperones of HSP70 chaperones,
acting as nucleotide exchange factors (NEFs), to remove
ADP from their HSP70 chaperone partners during the ATP
hydrolysis cycle. HSP70 chaperones assist in protein
folding and assembly, and can direct incompetent
"client" proteins towards degradation. Like HSP70
chaperones, HSP105/110s have an N-terminal
nucleotide-binding domain (NBD) and a C-terminal
substrate-binding domain (SBD). For HSP70 chaperones,
the nucleotide sits in a deep cleft formed between the
two lobes of the NBD. The two subdomains of each lobe
change conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. Hsp70 chaperone activity is also
regulated by J-domain proteins.
Length = 381
Score = 29.0 bits (66), Expect = 3.1
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 55 DGDGGFSVCVCGRQHIFKPVSVQAM 79
DG G V G + +F P V AM
Sbjct: 95 DGKVGIKVNYLGEEKVFSPEQVLAM 119
>gnl|CDD|226991 COG4644, COG4644, Transposase and inactivated derivatives, TnpA
family [DNA replication, recombination, and repair].
Length = 323
Score = 29.0 bits (65), Expect = 3.2
Identities = 17/76 (22%), Positives = 24/76 (31%), Gaps = 9/76 (11%)
Query: 131 LESRRPPSPDSLRDKVCHILNVTREIDNFFPGIFDYCNIRVYDDDKTDLLKHWDNTYKYI 190
L R P + D+ +I P I NI +K +DN K
Sbjct: 144 LGFRFAPRLKDIADQKLYIPEKN--ELALLPSIIGGSNI-------IIEIKQYDNMLKDA 194
Query: 191 TSAKPSQRDETEKIIR 206
S K D + + R
Sbjct: 195 ISIKVGNADPSAILRR 210
>gnl|CDD|238952 cd01994, Alpha_ANH_like_IV, This is a subfamily of Adenine
nucleotide alpha hydrolases superfamily.Adeninosine
nucleotide alpha hydrolases superfamily includes N type
ATP PPases and ATP sulphurylases. It forms a
apha/beta/apha fold which binds to Adenosine group.
This subfamily of proteins is predicted to bind ATP.
This domainhas a strongly conserved motif SGGKD at the
N terminus.
Length = 194
Score = 28.3 bits (64), Expect = 3.5
Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 20/88 (22%)
Query: 189 YITSAKPSQRDETEKIIRSTLKEIIMSVDLDEVT--------SKYIRSRLEDIMDSDLGE 240
+ DE E LKE++ + + V S+Y R+R+E + + LG
Sbjct: 62 IRIEISGEEEDEVE-----DLKELLRKLKEEGVDAVVFGAILSEYQRTRVERVCER-LG- 114
Query: 241 YKSF-----IDQLEFRNLLIEGGVKSRV 263
+ DQ E +IE G K+ +
Sbjct: 115 LEPLAPLWGRDQEELLREMIEAGFKAII 142
>gnl|CDD|149682 pfam08702, Fib_alpha, Fibrinogen alpha/beta chain family.
Fibrinogen is a protein involved in platelet aggregation
and is essential for the coagulation of blood. This
domain forms part of the central coiled coiled region of
the protein which is formed from two sets of three
non-identical chains (alpha, beta and gamma).
Length = 146
Score = 28.0 bits (63), Expect = 3.8
Identities = 13/82 (15%), Positives = 29/82 (35%), Gaps = 9/82 (10%)
Query: 140 DSLRDKVCHILNVTREIDNFFPGIFDYCNIR---------VYDDDKTDLLKHWDNTYKYI 190
+ L + + + N T + I D +Y+ L K + +
Sbjct: 39 EDLENLLDQLANSTSSAHQYVKHIKDSLRGDQKQAQPNDNIYNAYSKSLRKMIEYILETK 98
Query: 191 TSAKPSQRDETEKIIRSTLKEI 212
+ + SQ ++++RS +I
Sbjct: 99 INTQESQIRVLQEVLRSNRSKI 120
>gnl|CDD|173777 cd01027, TOPRIM_RNase_M5_like, TOPRIM_ RNase M5_like: The
topoisomerase-primase (TOPRIM) nucleotidyl
transferase/hydrolase domain found in Ribonuclease M5:
(RNase M5) and other small primase-like proteins from
bacteria and archaea. RNase M5 catalyzes the maturation
of 5S rRNA in low G+C Gram-positive bacteria. The TOPRIM
domain has two conserved motifs, one of which centers at
a conserved glutamate and the other one at two conserved
aspartates (DxD). The conserved glutamate may act as a
general base in nucleotide polymerization by primases.
The DXD motif may co-ordinate Mg2+, a cofactor required
for full catalytic function.
Length = 81
Score = 26.8 bits (60), Expect = 4.4
Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 188 KYITSAKPSQRDETEKIIRSTLKEIIMSVDLDEVTSKYIRSRLEDIMDSDLGEYK 242
+ I + ET ++I+ + +I+ D D K IR +L + + + E K
Sbjct: 24 EIIETNGSIINKETIELIKKAYRGVIILTDPDRKGEK-IRKKLSEYLSGPVPEIK 77
>gnl|CDD|165319 PHA03020, PHA03020, hypothetical protein; Provisional.
Length = 352
Score = 28.4 bits (63), Expect = 4.7
Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 179 LLKHWDNTYK--YITSAKPSQRDETEKIIRSTLKEIIMSVDLDEVTSKYI 226
L ++D Y IT +K + + E I+ S ++I ++ D+ + YI
Sbjct: 297 LADYFDCNYIIYIITESKKKKFEFLEHIVSSR-EDIFIAEDIIAIIKGYI 345
>gnl|CDD|227095 COG4753, COG4753, Response regulator containing CheY-like receiver
domain and AraC-type DNA-binding domain [Signal
transduction mechanisms].
Length = 475
Score = 28.5 bits (64), Expect = 5.1
Identities = 23/118 (19%), Positives = 37/118 (31%), Gaps = 9/118 (7%)
Query: 194 KPSQRDETEKIIRSTLKEIIMSVDLDEVTSKYIRSRLEDIMDSD-LGEYKSFIDQLEFRN 252
KP + E E LK+II ++ + + I L ++ + L E I + E
Sbjct: 105 KPVDKAELE----EALKKIIGKLEEQQKVKQDIEKLLTLLIGHEPLEELAKKIYKWEGAT 160
Query: 253 LLIEGGVKSRVYALEANAHPHDGAPPQPSLLSQQIASTVTSMDKKSPPRPRQPISTNT 310
+ S+ + H PS LSQ V + P
Sbjct: 161 GIQSQLADSQRTLKDLAEHLEL----SPSYLSQLFKEEVGLFILERFLIRSAPFQEYG 214
>gnl|CDD|222751 pfam14434, Imm6, Immunity protein Imm6. A predicted immunity
protein, with an alpha+beta fold (mostly alpha helices).
The protein is present in polymorphic toxin systems as
an immediate gene neighbor of the toxin gene.
Length = 121
Score = 27.2 bits (61), Expect = 5.6
Identities = 8/45 (17%), Positives = 19/45 (42%)
Query: 197 QRDETEKIIRSTLKEIIMSVDLDEVTSKYIRSRLEDIMDSDLGEY 241
+ E +R L ++ EV++ + S L++ + + Y
Sbjct: 19 KESEDYYFVREALDACWKWLEGKEVSADELYSLLDNEDEEGILIY 63
>gnl|CDD|223318 COG0240, GpsA, Glycerol-3-phosphate dehydrogenase [Energy
production and conversion].
Length = 329
Score = 28.3 bits (64), Expect = 5.7
Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 11/77 (14%)
Query: 143 RDKVCHILNVTREIDNFFPGIFDYCNIRVYDDDKTDLLKHWDNTYKYITSAKPSQRDETE 202
+++ +N TRE + PGI N++ D + L D I A PSQ
Sbjct: 33 DEEIVAEINETRENPKYLPGILLPPNLKATTDLA-EALDGAD----IIVIAVPSQA---- 83
Query: 203 KIIRSTLKEIIMSVDLD 219
+R L+++ + D
Sbjct: 84 --LREVLRQLKPLLLKD 98
>gnl|CDD|178748 PLN03209, PLN03209, translocon at the inner envelope of chloroplast
subunit 62; Provisional.
Length = 576
Score = 28.4 bits (63), Expect = 5.9
Identities = 14/59 (23%), Positives = 25/59 (42%)
Query: 259 VKSRVYALEANAHPHDGAPPQPSLLSQQIASTVTSMDKKSPPRPRQPISTNTTGRSINP 317
V ++ EA + P + PPQP + + S T+ + PP P +++ S
Sbjct: 342 VPTKPVTPEAPSPPIEEEPPQPKAVVPRPLSPYTAYEDLKPPTSPIPTPPSSSPASSKS 400
>gnl|CDD|201664 pfam01210, NAD_Gly3P_dh_N, NAD-dependent glycerol-3-phosphate
dehydrogenase N-terminus. NAD-dependent
glycerol-3-phosphate dehydrogenase (GPDH) catalyzes the
interconversion of dihydroxyacetone phosphate and
L-glycerol-3-phosphate. This family represents the
N-terminal NAD-binding domain.
Length = 157
Score = 26.8 bits (60), Expect = 9.7
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 143 RDKVCHILNVTREIDNFFPGIFDYCNIRVYDD 174
+++ +N TRE + PGI N+R D
Sbjct: 31 DEELIEEINTTRENVKYLPGIKLPDNLRATTD 62
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.133 0.398
Gapped
Lambda K H
0.267 0.0747 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,875,759
Number of extensions: 1494900
Number of successful extensions: 1399
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1395
Number of HSP's successfully gapped: 34
Length of query: 317
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 220
Effective length of database: 6,635,264
Effective search space: 1459758080
Effective search space used: 1459758080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.5 bits)