RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6368
(317 letters)
>2nt2_A Protein phosphatase slingshot homolog 2; alpha/beta hydrolase;
2.10A {Homo sapiens}
Length = 145
Score = 68.4 bits (168), Expect = 2e-14
Identities = 38/73 (52%), Positives = 54/73 (73%), Gaps = 10/73 (13%)
Query: 123 NEWHAMDSLESRRPPSPDSLRD-KVCHILNVTREIDNFFPGIFDYCNIRVYDDDKTDLLK 181
+EW+A + + L++ V +ILNVTREIDNFFPG+F+Y NIRVYD++ TDLL
Sbjct: 15 SEWNASN---------LEDLQNRGVRYILNVTREIDNFFPGVFEYHNIRVYDEEATDLLA 65
Query: 182 HWDNTYKYITSAK 194
+W++TYK+I+ AK
Sbjct: 66 YWNDTYKFISKAK 78
>3ezz_A Dual specificity protein phosphatase 4; alpha/beta, hydrolase,
nucleus; 2.90A {Homo sapiens} PDB: 1m3g_A
Length = 144
Score = 67.2 bits (165), Expect = 5e-14
Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 10/73 (13%)
Query: 123 NEWHAMDSLESRRPPSPDSLRD-KVCHILNVTREIDNFFPGIFDYCNIRVYDDDKTDLLK 181
+ +HA D L + +LNV+ + N F G + Y I V D+ K D+
Sbjct: 15 SAYHAAR---------RDMLDALGITALLNVSSDCPNHFEGHYQYKCIPVEDNHKADISS 65
Query: 182 HWDNTYKYITSAK 194
+ +YI + K
Sbjct: 66 WFMEAIEYIDAVK 78
>2q05_A Late protein H1, dual specificity protein phosphatase; structural
genomics, APC7320, P protein structure initiative; HET:
MSE; 2.57A {Vaccinia virus WR}
Length = 195
Score = 65.9 bits (161), Expect = 4e-13
Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 9/72 (12%)
Query: 123 NEWHAMDSLESRRPPSPDSLRDKVCHILNVTREIDNFFPGIFDYCNIRVYDDDKTDLLKH 182
N +AMD S K ++LN+T + + +I + DD TD+ K+
Sbjct: 60 NYKNAMD---------APSSEVKFKYVLNLTMDKYTLPNSNINIIHIPLVDDTTTDISKY 110
Query: 183 WDNTYKYITSAK 194
+D+ +++
Sbjct: 111 FDDVTAFLSKCD 122
>3s4e_A Dual specificity protein phosphatase 19; PTP, protein tyrosine
phosphatase, hydrolase; 1.26A {Homo sapiens}
Length = 144
Score = 64.5 bits (158), Expect = 4e-13
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 10/73 (13%)
Query: 123 NEWHAMDSLESRRPPSPDSLRD-KVCHILNVTREIDNFFPGIFDYCNIRVYDDDKTDLLK 181
++ A D D+L+ KV HILNV ++N F F Y +I + D +T++L
Sbjct: 15 SQDAAHD---------LDTLKKNKVTHILNVAYGVENAFLSDFTYKSISILDLPETNILS 65
Query: 182 HWDNTYKYITSAK 194
++ +++I AK
Sbjct: 66 YFPECFEFIEEAK 78
>3cm3_A Late protein H1, dual specificity protein phosphatase;
dual-specificity phosphatase, VH1, hydrolase; 1.32A
{Vaccinia virus} PDB: 2rf6_A 2p4d_A
Length = 176
Score = 65.5 bits (160), Expect = 5e-13
Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 9/72 (12%)
Query: 123 NEWHAMDSLESRRPPSPDSLRDKVCHILNVTREIDNFFPGIFDYCNIRVYDDDKTDLLKH 182
N +AMD S K ++LN+T + + +I + DD TD+ K+
Sbjct: 43 NYKNAMD---------APSSEVKFKYVLNLTMDKYTLPNSNINIIHIPLVDDTTTDISKY 93
Query: 183 WDNTYKYITSAK 194
+D+ +++
Sbjct: 94 FDDVTAFLSKCD 105
>3emu_A Leucine rich repeat and phosphatase domain containing protein;
structural genomics, hydrolase, PSI-2, protein structure
initiative; 2.30A {Entamoeba histolytica}
Length = 161
Score = 65.0 bits (159), Expect = 5e-13
Identities = 12/73 (16%), Positives = 26/73 (35%), Gaps = 10/73 (13%)
Query: 123 NEWHAMDSLESRRPPSPDSLRD-KVCHILNVTREIDNFFPGIFDYCNIRVYDDDKTDLLK 181
+ +A + D + + + IL V E+ + F D + + ++ L
Sbjct: 21 SFLNAHN---------VDYIHNNNISSILLVGIEVPSLFKDQCDILRLDIVSEEGHQLYD 71
Query: 182 HWDNTYKYITSAK 194
N K+I +
Sbjct: 72 SIPNAIKFIIRSI 84
>2g6z_A Dual specificity protein phosphatase 5; alpha/beta, hydrolase;
2.70A {Homo sapiens}
Length = 211
Score = 65.2 bits (159), Expect = 1e-12
Identities = 14/73 (19%), Positives = 25/73 (34%), Gaps = 10/73 (13%)
Query: 123 NEWHAMDSLESRRPPSPDSLRD-KVCHILNVTREIDNFFPGIFDYCNIRVYDDDKTDLLK 181
+ +HA + L + + +LNV+R Y I V D D+
Sbjct: 17 SAYHASK---------CEFLANLHITALLNVSRRTSEACMTHLHYKWIPVEDSHTADISS 67
Query: 182 HWDNTYKYITSAK 194
H+ +I +
Sbjct: 68 HFQEAIDFIDCVR 80
>2wgp_A Dual specificity protein phosphatase 14; MKP6, DUSP14, hydrolase,
dual specifici phosphatase; 1.88A {Homo sapiens}
Length = 190
Score = 64.3 bits (157), Expect = 2e-12
Identities = 15/73 (20%), Positives = 25/73 (34%), Gaps = 10/73 (13%)
Query: 123 NEWHAMDSLESRRPPSPDSLRD-KVCHILNVTREIDNFFPGIFDYCNIRVYDDDKTDLLK 181
A + L+ + I+N T EI NF F+Y + + D +
Sbjct: 37 RGSVASN---------RHLLQARGITCIVNATIEIPNFNWPQFEYVKVPLADMPHAPIGL 87
Query: 182 HWDNTYKYITSAK 194
++D I S
Sbjct: 88 YFDTVADKIHSVS 100
>2hcm_A Dual specificity protein phosphatase; structural genomics, PSI,
protein structure INI NEW YORK SGX research center for
structural genomics; 2.00A {Mus musculus}
Length = 164
Score = 63.4 bits (155), Expect = 2e-12
Identities = 15/73 (20%), Positives = 25/73 (34%), Gaps = 10/73 (13%)
Query: 123 NEWHAMDSLESRRPPSPDSLRD-KVCHILNVTREIDNFFPGIFDYCNIRVYDDDKTDLLK 181
N A + L + +NV+R+ + V+DD DLL
Sbjct: 23 NARAAGA---------TELLVRAGITLCVNVSRQQPGPRAPGVAELRVPVFDDPAEDLLT 73
Query: 182 HWDNTYKYITSAK 194
H + T + +A
Sbjct: 74 HLEPTCAAMEAAV 86
>2esb_A Dual specificity protein phosphatase 18; alpha/beta structure,
hydrolase; HET: EPE; 2.00A {Homo sapiens}
Length = 188
Score = 63.1 bits (154), Expect = 3e-12
Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 10/73 (13%)
Query: 123 NEWHAMDSLESRRPPSPDSLRD-KVCHILNVTREIDNFFPGIFDYCNIRVYDDDKTDLLK 181
N A + L ++ ++NV+ E+ N Y + V D + L
Sbjct: 31 NGVAANN---------KLMLSSNQITMVINVSVEVVNTLYEDIQYMQVPVADSPNSRLCD 81
Query: 182 HWDNTYKYITSAK 194
+D +I S +
Sbjct: 82 FFDPIADHIHSVE 94
>2hxp_A Dual specificity protein phosphatase 9; human phosphatase,
structural genomics, PSI-2, protein structure
initiative; 1.83A {Homo sapiens} PDB: 3lj8_A 1mkp_A
Length = 155
Score = 61.4 bits (150), Expect = 9e-12
Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 12/75 (16%)
Query: 123 NEWHAMDSLESRRPPSPDSLRD-KVCHILNVTREIDNFFP--GIFDYCNIRVYDDDKTDL 179
+ + + +SL + +ILNVT + NFF G F Y I + D +L
Sbjct: 17 SARDSAN---------LESLAKLGIRYILNVTPNLPNFFEKNGDFHYKQIPISDHWSQNL 67
Query: 180 LKHWDNTYKYITSAK 194
+ + ++I A
Sbjct: 68 SRFFPEAIEFIDEAL 82
>1yz4_A DUSP15, dual specificity phosphatase-like 15 isoform A; hydrolase;
HET: BOG; 2.40A {Homo sapiens}
Length = 160
Score = 61.1 bits (149), Expect = 1e-11
Identities = 15/76 (19%), Positives = 25/76 (32%), Gaps = 11/76 (14%)
Query: 123 NEWHAMDSLESRRPPSPDSLRD-KVCHILNVTREIDNFFPGIFDYCNIRVYDDDKTDLLK 181
N A D D L K+ HI+++ Y I V D + + K
Sbjct: 19 NFIDAKD---------LDQLGRNKITHIISIHESPQPLLQD-ITYLRIPVADTPEVPIKK 68
Query: 182 HWDNTYKYITSAKPSQ 197
H+ +I + +
Sbjct: 69 HFKECINFIHCCRLNG 84
>1zzw_A Dual specificity protein phosphatase 10; MKP, PTP, hydrolase; 1.60A
{Homo sapiens}
Length = 149
Score = 60.3 bits (147), Expect = 2e-11
Identities = 16/75 (21%), Positives = 37/75 (49%), Gaps = 12/75 (16%)
Query: 123 NEWHAMDSLESRRPPSPDSLRD-KVCHILNVTREIDNFF--PGIFDYCNIRVYDDDKTDL 179
NE A D D+++ + +++NVT + + G+F+Y + D +K +L
Sbjct: 15 NEQDAQD---------LDTMQRLNIGYVINVTTHLPLYHYEKGLFNYKRLPATDSNKQNL 65
Query: 180 LKHWDNTYKYITSAK 194
++++ +++I A
Sbjct: 66 RQYFEEAFEFIEEAH 80
>2oud_A Dual specificity protein phosphatase 10; A central five-stranded
B-sheet, hydrolase; 2.80A {Homo sapiens}
Length = 177
Score = 60.4 bits (147), Expect = 3e-11
Identities = 16/75 (21%), Positives = 37/75 (49%), Gaps = 12/75 (16%)
Query: 123 NEWHAMDSLESRRPPSPDSLRD-KVCHILNVTREIDNFF--PGIFDYCNIRVYDDDKTDL 179
NE A D D+++ + +++NVT + + G+F+Y + D +K +L
Sbjct: 19 NEQDAQD---------LDTMQRLNIGYVINVTTHLPLYHYEKGLFNYKRLPATDSNKQNL 69
Query: 180 LKHWDNTYKYITSAK 194
++++ +++I A
Sbjct: 70 RQYFEEAFEFIEEAH 84
>1wrm_A Dual specificity phosphatase 22; DSP, JNK, hydrolase; HET: MES;
1.50A {Homo sapiens}
Length = 165
Score = 60.0 bits (146), Expect = 3e-11
Identities = 18/73 (24%), Positives = 26/73 (35%), Gaps = 11/73 (15%)
Query: 123 NEWHAMDSLESRRPPSPDSLRD-KVCHILNVTREIDNFFPGIFDYCNIRVYDDDKTDLLK 181
N A D + L KV HIL+V G Y I D +L +
Sbjct: 18 NFKDARD---------AEQLSKNKVTHILSVHDSARPMLEG-VKYLCIPAADSPSQNLTR 67
Query: 182 HWDNTYKYITSAK 194
H+ + K+I +
Sbjct: 68 HFKESIKFIHECR 80
>2r0b_A Serine/threonine/tyrosine-interacting protein; structural genomics,
phosphatase, PSI-2, protein structure initiative; 1.60A
{Homo sapiens}
Length = 154
Score = 58.8 bits (143), Expect = 7e-11
Identities = 13/81 (16%), Positives = 31/81 (38%), Gaps = 13/81 (16%)
Query: 123 NEWHAMDSLESRRPPSPDSLRD-KVCHILNVTREIDN-----FFPGIFDYCNIRVYDDDK 176
AM S L+ + HI+ + + I+ F +F Y + + D+
Sbjct: 17 PYSSAMKS-------KLPVLQKHGITHIICIRQNIEANFIKPNFQQLFRYLVLDIADNPV 69
Query: 177 TDLLKHWDNTYKYITSAKPSQ 197
++++ + T ++I +
Sbjct: 70 ENIIRFFPMTKEFIDGSLQMG 90
>2e0t_A Dual specificity phosphatase 26; conserved hypothetical protein,
structural genomics, NPPSFA, project on protein
structural and functional analyses; 1.67A {Homo sapiens}
Length = 151
Score = 54.9 bits (133), Expect = 1e-09
Identities = 13/77 (16%), Positives = 24/77 (31%), Gaps = 15/77 (19%)
Query: 123 NEWHAMDSLESRRPPSPDSLRD-KVCHILNVTREIDNFFPGI-----FDYCNIRVYDDDK 176
++ A + LR + H+LN + P Y + +D
Sbjct: 13 DQDMANN---------RRELRRLGITHVLNASHSRWRGTPEAYEGLGIRYLGVEAHDSPA 63
Query: 177 TDLLKHWDNTYKYITSA 193
D+ H+ +I A
Sbjct: 64 FDMSIHFQTAADFIHRA 80
>2y96_A Dual specificity phosphatase DUPD1; hydrolase; 2.38A {Homo sapiens}
Length = 219
Score = 54.7 bits (132), Expect = 5e-09
Identities = 14/79 (17%), Positives = 22/79 (27%), Gaps = 17/79 (21%)
Query: 123 NEWHAMDSLESRRPPSPDSLRD-KVCHILNVTREIDN-------FFPGIFDYCNIRVYDD 174
+E A+D L+ H+LN N + Y + D
Sbjct: 65 DEATALD---------RYRLQKAGFTHVLNAAHGRWNVDTGPDYYRDMDIQYHGVEADDL 115
Query: 175 DKTDLLKHWDNTYKYITSA 193
DL + +I A
Sbjct: 116 PTFDLSVFFYPAAAFIDRA 134
>3f81_A Dual specificity protein phosphatase 3; hydrolase, protein
dual-specificity phosphatase, inhibitor; HET: STT; 1.90A
{Homo sapiens} PDB: 1vhr_A* 1j4x_A*
Length = 183
Score = 52.7 bits (127), Expect = 2e-08
Identities = 13/81 (16%), Positives = 24/81 (29%), Gaps = 19/81 (23%)
Query: 123 NEWHAMDSLESRRPPSPDSLRD-KVCHILNVTREIDN---------FFPGIFDYCNIRVY 172
N A D L+ + H+LN + Y I+
Sbjct: 39 NASVAQD---------IPKLQKLGITHVLNAAEGRSFMHVNTNANFYKDSGITYLGIKAN 89
Query: 173 DDDKTDLLKHWDNTYKYITSA 193
D + +L +++ +I A
Sbjct: 90 DTQEFNLSAYFERAADFIDQA 110
>2pq5_A Dual specificity protein phosphatase 13; hydrolase, dual
specificity phosphatase, DUSP13, testis and skeletal
muscle specific DSP; 2.30A {Homo sapiens} PDB: 2gwo_A
Length = 205
Score = 52.8 bits (127), Expect = 2e-08
Identities = 13/79 (16%), Positives = 25/79 (31%), Gaps = 17/79 (21%)
Query: 123 NEWHAMDSLESRRPPSPDSLRD-KVCHILNVTREIDN-------FFPGIFDYCNIRVYDD 174
+ + A D L + H++N + +Y I D+
Sbjct: 57 DAYAARD---------KSKLIQLGITHVVNAAAGKFQVDTGAKFYRGMSLEYYGIEADDN 107
Query: 175 DKTDLLKHWDNTYKYITSA 193
DL ++ +YI +A
Sbjct: 108 PFFDLSVYFLPVARYIRAA 126
>2j16_A SDP-1, tyrosine-protein phosphatase YIL113W; hydrolase,
hypothetical protein; 2.7A {Saccharomyces cerevisiae}
PDB: 2j17_A* 2j16_B
Length = 182
Score = 44.8 bits (106), Expect = 7e-06
Identities = 5/50 (10%), Positives = 15/50 (30%)
Query: 145 KVCHILNVTREIDNFFPGIFDYCNIRVYDDDKTDLLKHWDNTYKYITSAK 194
++NV E ++ + + + + + I +A
Sbjct: 65 PFDVVINVAEEANDLRMQVPAVEYHHYRWEHDSQIALDLPSLTSIIHAAT 114
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.8 bits (110), Expect = 7e-06
Identities = 36/217 (16%), Positives = 65/217 (29%), Gaps = 58/217 (26%)
Query: 70 IFKPVSV-------QAMWSA---------LQSLHKVSSVARDKN---YFLNGGSHEWVSH 110
+F P S +W + LHK S V + + E
Sbjct: 380 VF-PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVK 438
Query: 111 YEAKIASDRSCLNEWHAMDSLESRRPPSPDSLRDKVC-----HILNVTR-EIDNFFPGIF 164
E + A RS ++ ++ + +S P L H+ N+ E F +F
Sbjct: 439 LENEYALHRSIVDHYNIPKTFDSDD-LIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF 497
Query: 165 -DY-------------CNIRVY-DDDKTDLLKHWDNTYK-YITSAKPSQRDETEKIIRST 208
D+ N + L YK YI P + E+++
Sbjct: 498 LDFRFLEQKIRHDSTAWNASGSILNTLQQL-----KFYKPYICDNDP----KYERLVN-A 547
Query: 209 LKEIIMSVDLDEVTSKYIRSRLEDIMDSDLGEYKSFI 245
+ + + ++ I S+ D++ L I
Sbjct: 548 ILDFLPKIE-----ENLICSKYTDLLRIALMAEDEAI 579
Score = 42.1 bits (98), Expect = 2e-04
Identities = 35/266 (13%), Positives = 70/266 (26%), Gaps = 100/266 (37%)
Query: 52 ITLDGDGGFSVCVCGRQHIFKPVSVQAMWSALQSLHKVSSVARDKNY--FLNGGSHEWVS 109
+ +DG G G K + + V ++ W++
Sbjct: 153 VLIDGVLG-----SG-----K--------TWV-----ALDVCLSYKVQCKMDFKIF-WLN 188
Query: 110 HYEAKIASDRSCL----NEWHAMDSLESRRPPSPDSLRDKVCHILNVTREIDNFF----- 160
S + L + +D + R +++ I ++ E+
Sbjct: 189 L--KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL---RIHSIQAELRRLLKSKPY 243
Query: 161 ------------PGI---FDY-CNIRVYDDDK--TDLLKHWDNTYKYITSAKPSQ---RD 199
F+ C I + K TD L T +I+ S D
Sbjct: 244 ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLS--AATTTHISLDHHSMTLTPD 301
Query: 200 ETEKIIRSTLKEII------------MSVDL------DEV-TSKYIR----SRLEDIMDS 236
E + ++ L + + D + T + +L I+
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII-- 359
Query: 237 DLGEYKSFIDQLE-------FRNLLI 255
+S ++ LE F L +
Sbjct: 360 -----ESSLNVLEPAEYRKMFDRLSV 380
Score = 31.4 bits (70), Expect = 0.43
Identities = 21/155 (13%), Positives = 50/155 (32%), Gaps = 35/155 (22%)
Query: 158 NFFPGIFDYCNIRVYDDDKTDLLKHWDNTYKYITSAKPSQRDETEKIIRSTLKEIIMSVD 217
+F G Y D+L +++ + + K ++ K I+ +
Sbjct: 8 DFETGEHQYQY--------KDILSVFEDAFV---------DNFDCKDVQDMPKSILSKEE 50
Query: 218 LDE-VTSKYIRSRLEDIMDS--DLGE--YKSFIDQLEFRNLLIEGGVKSRVYALEANAHP 272
+D + SK S + + E + F++++ N + S E
Sbjct: 51 IDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY---KFLMSP-IKTEQR--- 103
Query: 273 HDGAPPQPSLLSQQIASTVTSMDKKSPPRPRQPIS 307
QPS++++ + + + +S
Sbjct: 104 ------QPSMMTRMYIEQRDRLYNDNQVFAKYNVS 132
>3rgo_A Protein-tyrosine phosphatase mitochondrial 1; phosphatidylglycerol
phosphate (PGP) phosphatase, hydrolase; 1.93A {Mus
musculus} PDB: 3rgq_A*
Length = 157
Score = 44.3 bits (105), Expect = 8e-06
Identities = 5/59 (8%), Positives = 15/59 (25%), Gaps = 9/59 (15%)
Query: 145 KVCHILNVTREIDNFFPGI---------FDYCNIRVYDDDKTDLLKHWDNTYKYITSAK 194
V ++ + E + F + + D L + ++ +
Sbjct: 28 NVRGVITMNEEYETRFLCNTSKEWKKAGVEQLRLSTVDMTGVPTLANLHKGVQFALKYQ 86
>3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity
phosphatase, carbohydrate BIND hydrolase; 2.40A
{Arabidopsis thaliana}
Length = 294
Score = 41.3 bits (96), Expect = 2e-04
Identities = 12/69 (17%), Positives = 20/69 (28%), Gaps = 15/69 (21%)
Query: 140 DSLRD-KVCHILNVTREIDNFFPGI--------------FDYCNIRVYDDDKTDLLKHWD 184
D LR V I + ++ D + G+ + + D D DL
Sbjct: 33 DKLRKIGVKTIFCLQQDPDLEYFGVDISSIQAYAKKYSDIQHIRCEIRDFDAFDLRMRLP 92
Query: 185 NTYKYITSA 193
+ A
Sbjct: 93 AVVGTLYKA 101
>1q1v_A DEK protein; winged-helix motif, DNA binding protein; NMR {Homo
sapiens} SCOP: a.159.4.1
Length = 70
Score = 37.5 bits (87), Expect = 4e-04
Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 193 AKPSQRDETEKIIRSTLKEIIMSVDLDEVTSKYIRSRLEDIM-DSDLGEYKSFIDQ 247
K ++ T++ ++ T+K+++ S +L+EVT K I ++ + DL E K FI
Sbjct: 5 IKKLKKPPTDEELKETIKKLLASANLEEVTMKQICKKVYENYPTYDLTERKDFIKT 60
>3n9y_A Cholesterol SIDE-chain cleavage enzyme; cytochrome P450,
cholesterol SIDE chain cleavage, structural genomics,
structural genomics consortium, SGC; HET: HEM CLR; 2.10A
{Homo sapiens} PDB: 3n9z_A* 3na1_A* 3na0_A* 3mzs_A*
Length = 487
Score = 34.6 bits (80), Expect = 0.035
Identities = 14/113 (12%), Positives = 36/113 (31%), Gaps = 13/113 (11%)
Query: 128 MDSLESRRPPSPDSLRDKVCHILNVTREIDNFFPGIFDYCNIRVYDDDKTDLLKHWDNTY 187
LE P D + + + + + N P +F + + D + WD +
Sbjct: 179 QGMLEEVVNPEAQRFIDAIYQMFHTSVPMLNLPPDLFRLFRTKTW----KDHVAAWDVIF 234
Query: 188 KYITS------AKPSQRDETEKIIRSTLKEIIMSVDLDEVTSKYIRSRLEDIM 234
+ Q+ R L ++ + + I++ + +++
Sbjct: 235 SKADIYTQNFYWELRQKGSVHHDYRGILYRLLGDSKMSF---EDIKANVTEML 284
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.9 bits (69), Expect = 0.33
Identities = 10/53 (18%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 197 QRDETEKIIRSTLKEIIMSVDLDEVTSKYIRSRLEDIMDSDLGEYKSFIDQLE 249
+ D K++ +E DL+E + ++E ++ K+F Q +
Sbjct: 100 ELDAASKVMEQEWRE-KAKKDLEEWNQRQ-SEQVEKNKINNRIADKAFYQQPD 150
Score = 28.2 bits (62), Expect = 2.4
Identities = 12/61 (19%), Positives = 23/61 (37%), Gaps = 7/61 (11%)
Query: 193 AKPSQ-RDETEKII--RSTLKEIIMSVDLDEVTSKYIRSRLEDIMDSDLGE-YKSFIDQL 248
A+ + E E I R ++ + +LD + + DL E + +Q+
Sbjct: 75 AQADRLTQEPESIRKWREEQRKRL--QELDAASKVM-EQEWREKAKKDLEEWNQRQSEQV 131
Query: 249 E 249
E
Sbjct: 132 E 132
>2kd1_A DNA integration/recombination/invertion protein; protein structure
initiative, structural genomics, unknown function,
PSI-2; HET: DNA; NMR {Bacillus cereus atcc 14579}
Length = 118
Score = 29.2 bits (66), Expect = 0.64
Identities = 11/61 (18%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 178 DLLKHWDNTYKYITSAKPSQRDETEKIIRSTLKEIIMSVDLDEVTSKYIRSRLEDIMDSD 237
+ L+ W NT + S + + S + + ++ L ++TS ++++ + + D
Sbjct: 10 EYLESWFNTKR--HSVGIQTAKVLKGYLNSRIIPSLGNIKLAKLTSLHMQNYVNSLRDEG 67
Query: 238 L 238
L
Sbjct: 68 L 68
>2kkp_A Phage integrase; SAM-like domain, alpha-helical bundle, structural
genomics, PSI-2, protein structure initiative; NMR
{Moorella thermoacetica atcc 39073}
Length = 117
Score = 29.2 bits (66), Expect = 0.74
Identities = 11/62 (17%), Positives = 23/62 (37%), Gaps = 1/62 (1%)
Query: 178 DLLKHWDNTYKYITSAKPSQRDETEKIIRSTLKEIIMSVDLDEVTSKYIRSRLEDIMDSD 237
L W Y + S + E ++R + + S+ L ++ I+ ++S
Sbjct: 11 QWLNRWLTDYAKPH-LRQSTWESYETVLRLHVIPTLGSIPLKKLQPADIQRLYASKLESG 69
Query: 238 LG 239
L
Sbjct: 70 LS 71
>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase;
HET: LLX NHE; 2.05A {Homo sapiens}
Length = 367
Score = 30.0 bits (68), Expect = 0.90
Identities = 17/108 (15%), Positives = 40/108 (37%), Gaps = 18/108 (16%)
Query: 65 CGRQHIFKPVSVQAMWSALQSLHKVSSVARDKNYFLNGGSHEWVSHYEAKIASDRSCLNE 124
G+ H KP ++ + L + G + + Y A+ + +
Sbjct: 18 YGQGHPMKPHRIRMTHNLLLNY----------------GLYRKMEIYRPHKATAEE-MTK 60
Query: 125 WHAMDSLESRRPPSPDSLRDKVCHILNVTREIDN-FFPGIFDYCNIRV 171
+H+ + ++ R PD++ + + D F G+F++C +
Sbjct: 61 YHSDEYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLST 108
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.6 bits (66), Expect = 1.5
Identities = 32/190 (16%), Positives = 55/190 (28%), Gaps = 91/190 (47%)
Query: 86 LHKVSSVARDKNYFLNGGSHEWVSHYEAKIASDRSCLNEWHAMDSLESRRPPSPDSLRDK 145
L+K S A+D W +R+ + H D+ S+ D
Sbjct: 1635 LYKTSKAAQD----------VW----------NRA---DNHFKDTYGF-------SILDI 1664
Query: 146 VCHILNVTREIDNFFPGIFDYCNIRVYDDDKTDLLKHWDNTYKYITSAKPSQRDETEKII 205
V +N + F G IR +N I + +TEKI
Sbjct: 1665 V---INNPVNLTIHFGGEKG-KRIR-------------ENYSAMIFETIVDGKLKTEKIF 1707
Query: 206 RSTLKEIIMSVDLDEVTSKYI----------------------RSRLEDI-----MDSD- 237
+ +++E ++ Y ++ ED+ + +D
Sbjct: 1708 K----------EINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADA 1757
Query: 238 ------LGEY 241
LGEY
Sbjct: 1758 TFAGHSLGEY 1767
>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A
{Homo sapiens}
Length = 376
Score = 28.9 bits (65), Expect = 2.5
Identities = 18/107 (16%), Positives = 39/107 (36%), Gaps = 18/107 (16%)
Query: 66 GRQHIFKPVSVQAMWSALQSLHKVSSVARDKNYFLNGGSHEWVSHYEAKIASDRSCLNEW 125
G H KP + S + G ++ + ++ AS + +
Sbjct: 19 GAGHPMKPHRLALTHSLVLHY----------------GLYKKMIVFKPYQASQHD-MCRF 61
Query: 126 HAMDSLESRRPPSPDSLRDKVCHILNVTREIDN-FFPGIFDYCNIRV 171
H+ D ++ + SP +++ + D FPG+F++C+
Sbjct: 62 HSEDYIDFLQRVSPTNMQGFTKSLNAFNVGDDCPVFPGLFEFCSRYT 108
>1qme_A Penicillin-binding protein 2X; peptidoglycan synthesis, resistance,
cell WALL, transmembrane; 2.4A {Streptococcus
pneumoniae} SCOP: d.11.1.1 d.11.1.1 d.175.1.1 e.3.1.1
PDB: 1qmf_A* 1pyy_A* 1rp5_A 1pmd_A 1k25_A 2zc3_B*
2z2l_B* 2z2m_B* 2zc4_B* 2zc3_A* 2z2l_A* 2z2m_A* 2zc4_A*
2zc3_C* 2z2l_C* 2z2m_C* 2zc4_C*
Length = 702
Score = 28.2 bits (63), Expect = 4.3
Identities = 10/49 (20%), Positives = 16/49 (32%), Gaps = 4/49 (8%)
Query: 262 RVYALEANAHPHDGAPPQPSLLSQQIASTVTSMDKKSPPRPRQPISTNT 310
R + AN DG +P +S + K P+S +
Sbjct: 415 RAFTAIAN----DGVMLEPKFISAIYDPNDQTARKSQKEIVGNPVSKDA 459
>1saz_A Probable butyrate kinase 2; askha (acetate and sugar kinases,
HSC70, actin) superfamily, acetate kinase, isobutyrate
kinase; HET: ACP; 2.50A {Thermotoga maritima} SCOP:
c.55.1.2 c.55.1.2 PDB: 1x9j_A*
Length = 381
Score = 27.5 bits (62), Expect = 5.6
Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 5/52 (9%)
Query: 217 DLDEVTSKYIRSRLEDIMDSDLGEYKSFIDQLEFRNLLIEGGVKSRVYALEA 268
D V + ++ LG ++ +DQLEFR + V+ Y+L +
Sbjct: 21 DERMVKMQNFSHSPDE-----LGRFQKILDQLEFREKIARQFVEETGYSLSS 67
>1oks_A RNA polymerase alpha subunit; transferase, RNA-directed RNA
polymerase, nucleocapsid, phosphorylation.; HET: NHE;
1.8A {Measles virus} SCOP: a.8.5.1 PDB: 1t6o_A 2k9d_A
Length = 56
Score = 25.1 bits (54), Expect = 8.4
Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 206 RSTLKEIIMSVDLDEVTSKYIRSRLEDIM-DSDLGEYKSFIDQL 248
RS ++ II S L+E +Y+ + L+DI +DL ++ + ++
Sbjct: 4 RSVIRSIIKSSRLEEDRKRYLMTLLDDIKGANDLAKFHQMLVKI 47
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.133 0.398
Gapped
Lambda K H
0.267 0.0818 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,835,880
Number of extensions: 281514
Number of successful extensions: 669
Number of sequences better than 10.0: 1
Number of HSP's gapped: 653
Number of HSP's successfully gapped: 43
Length of query: 317
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 223
Effective length of database: 4,077,219
Effective search space: 909219837
Effective search space used: 909219837
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.6 bits)